Query 014317
Match_columns 427
No_of_seqs 164 out of 1833
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 3.3E-21 1.1E-25 196.8 14.4 153 12-196 2-167 (594)
2 3ogk_B Coronatine-insensitive 99.8 1.6E-20 5.6E-25 191.7 18.2 103 11-132 4-122 (592)
3 2ast_B S-phase kinase-associat 99.8 3E-20 1E-24 176.1 -1.4 145 12-219 5-153 (336)
4 4fcg_A Uncharacterized protein 99.1 6.3E-11 2.1E-15 111.5 8.0 173 156-338 100-288 (328)
5 2p1m_B Transport inhibitor res 99.0 3.5E-11 1.2E-15 122.5 1.5 174 157-336 102-347 (594)
6 3ogk_B Coronatine-insensitive 99.0 7.2E-11 2.4E-15 120.1 1.3 62 269-335 286-350 (592)
7 4fcg_A Uncharacterized protein 98.9 3.3E-10 1.1E-14 106.6 2.8 221 85-336 73-310 (328)
8 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.4E-09 4.8E-14 72.4 3.8 40 12-51 5-44 (53)
9 2z80_A TOLL-like receptor 2, v 98.8 1.7E-08 6E-13 95.6 11.1 219 154-382 94-329 (353)
10 2z66_A Variable lymphocyte rec 98.8 3.2E-09 1.1E-13 98.6 5.5 212 156-379 48-273 (306)
11 3o53_A Protein LRIM1, AGAP0063 98.8 1.2E-09 4.3E-14 102.0 2.1 243 110-392 20-270 (317)
12 2z80_A TOLL-like receptor 2, v 98.7 3.1E-08 1E-12 93.9 10.4 224 160-394 52-287 (353)
13 4fmz_A Internalin; leucine ric 98.7 5.5E-09 1.9E-13 98.8 3.5 212 156-395 106-322 (347)
14 2z63_A TOLL-like receptor 4, v 98.7 7.9E-08 2.7E-12 97.1 11.7 210 158-383 323-548 (570)
15 2ca6_A RAN GTPase-activating p 98.7 3.2E-10 1.1E-14 109.1 -6.0 231 156-392 56-338 (386)
16 2id5_A Lingo-1, leucine rich r 98.6 1.5E-08 5E-13 100.3 5.0 174 155-337 75-258 (477)
17 3o6n_A APL1; leucine-rich repe 98.6 6.2E-08 2.1E-12 93.1 9.0 169 156-337 137-328 (390)
18 2z81_A CD282 antigen, TOLL-lik 98.6 9.9E-08 3.4E-12 95.9 10.5 226 160-395 26-262 (549)
19 4fmz_A Internalin; leucine ric 98.6 1.3E-08 4.4E-13 96.2 3.7 211 156-395 84-298 (347)
20 3vq2_A TLR4, TOLL-like recepto 98.6 4.6E-09 1.6E-13 107.1 0.3 142 156-306 303-455 (606)
21 1ozn_A Reticulon 4 receptor; N 98.6 8.7E-09 3E-13 94.6 1.9 40 156-196 52-91 (285)
22 3oja_A Leucine-rich immune mol 98.6 9.4E-09 3.2E-13 101.9 2.1 241 110-391 20-269 (487)
23 2ast_B S-phase kinase-associat 98.6 5.5E-09 1.9E-13 98.3 -0.2 167 157-330 115-299 (336)
24 3oja_B Anopheles plasmodium-re 98.6 7.8E-08 2.7E-12 97.9 8.3 189 156-365 143-354 (597)
25 1ozn_A Reticulon 4 receptor; N 98.6 2.6E-08 8.8E-13 91.5 3.6 208 158-380 30-251 (285)
26 1z7x_W Ribonuclease inhibitor; 98.5 4.5E-09 1.5E-13 103.4 -2.0 281 95-395 5-324 (461)
27 2z66_A Variable lymphocyte rec 98.5 8.6E-08 2.9E-12 88.9 6.6 218 159-395 27-259 (306)
28 1z7x_W Ribonuclease inhibitor; 98.5 4.9E-09 1.7E-13 103.1 -2.2 228 95-337 30-294 (461)
29 3zyj_A Leucine-rich repeat-con 98.5 4.8E-08 1.6E-12 95.5 4.7 195 154-365 82-288 (440)
30 3rgz_A Protein brassinosteroid 98.5 1.3E-08 4.6E-13 106.7 0.7 222 152-395 285-549 (768)
31 2xwt_C Thyrotropin receptor; s 98.5 1.3E-07 4.5E-12 84.3 6.9 189 160-365 31-235 (239)
32 1o6v_A Internalin A; bacterial 98.5 4.8E-08 1.7E-12 96.3 4.2 35 355-395 308-342 (466)
33 3o53_A Protein LRIM1, AGAP0063 98.5 5E-08 1.7E-12 91.0 4.0 214 157-395 31-248 (317)
34 3zyi_A Leucine-rich repeat-con 98.5 5.4E-08 1.8E-12 95.6 4.4 195 154-365 93-299 (452)
35 3oja_A Leucine-rich immune mol 98.5 5.1E-08 1.8E-12 96.6 4.2 214 157-395 31-248 (487)
36 4eco_A Uncharacterized protein 98.5 1.3E-07 4.3E-12 97.0 7.2 178 151-338 264-468 (636)
37 1h6u_A Internalin H; cell adhe 98.5 4.8E-08 1.6E-12 90.8 3.1 166 156-338 59-228 (308)
38 3v47_A TOLL-like receptor 5B a 98.5 5.3E-08 1.8E-12 95.5 3.5 61 272-337 295-357 (455)
39 1o6v_A Internalin A; bacterial 98.5 9.2E-08 3.1E-12 94.3 5.1 217 156-395 86-320 (466)
40 3t6q_A CD180 antigen; protein- 98.5 9.2E-09 3.2E-13 104.9 -2.2 108 151-260 292-411 (606)
41 4ezg_A Putative uncharacterize 98.5 2.6E-08 8.9E-13 86.1 0.9 150 158-337 42-191 (197)
42 2z63_A TOLL-like receptor 4, v 98.5 3.5E-08 1.2E-12 99.7 1.9 170 207-395 346-529 (570)
43 3t6q_A CD180 antigen; protein- 98.5 3.7E-08 1.3E-12 100.4 1.8 126 155-285 273-409 (606)
44 3oja_B Anopheles plasmodium-re 98.5 8.8E-08 3E-12 97.5 4.6 215 155-395 118-356 (597)
45 2id5_A Lingo-1, leucine rich r 98.4 2.1E-07 7.2E-12 91.9 7.0 174 155-337 147-330 (477)
46 4ecn_A Leucine-rich repeat pro 98.4 1.3E-08 4.4E-13 107.3 -2.1 151 152-308 440-628 (876)
47 3v47_A TOLL-like receptor 5B a 98.4 1.5E-08 5.1E-13 99.5 -1.6 123 245-380 295-421 (455)
48 3o6n_A APL1; leucine-rich repe 98.4 7E-08 2.4E-12 92.7 2.8 215 154-394 111-349 (390)
49 1ogq_A PGIP-2, polygalacturona 98.4 4.7E-08 1.6E-12 91.1 1.3 39 156-195 97-135 (313)
50 3vq2_A TLR4, TOLL-like recepto 98.4 2.8E-08 9.7E-13 101.2 -0.3 168 156-337 281-458 (606)
51 3zyi_A Leucine-rich repeat-con 98.4 4.1E-08 1.4E-12 96.4 0.8 173 155-337 118-300 (452)
52 3zyj_A Leucine-rich repeat-con 98.4 4.4E-08 1.5E-12 95.9 0.8 144 157-306 109-262 (440)
53 1ogq_A PGIP-2, polygalacturona 98.4 6.7E-08 2.3E-12 90.0 2.0 214 153-392 69-299 (313)
54 2ca6_A RAN GTPase-activating p 98.4 1.3E-08 4.5E-13 97.7 -2.9 181 157-338 91-314 (386)
55 3j0a_A TOLL-like receptor 5; m 98.4 2.7E-06 9.3E-11 90.1 13.8 101 229-337 266-372 (844)
56 1wwl_A Monocyte differentiatio 98.3 4.4E-08 1.5E-12 91.2 -0.6 88 120-219 93-184 (312)
57 2ft3_A Biglycan; proteoglycan, 98.3 4.1E-08 1.4E-12 92.2 -1.1 82 155-240 73-158 (332)
58 1h6u_A Internalin H; cell adhe 98.3 2E-07 6.9E-12 86.6 3.4 185 157-366 38-227 (308)
59 2z81_A CD282 antigen, TOLL-lik 98.3 8.4E-07 2.9E-11 89.1 8.0 180 154-338 68-262 (549)
60 2z7x_B TOLL-like receptor 1, v 98.3 4.1E-06 1.4E-10 83.5 12.5 79 156-239 65-148 (520)
61 3rfs_A Internalin B, repeat mo 98.3 1E-07 3.6E-12 86.8 0.6 61 156-219 59-120 (272)
62 3bz5_A Internalin-J, INLJ; leu 98.3 2.7E-07 9.3E-12 90.6 3.6 218 121-391 41-261 (457)
63 3rfs_A Internalin B, repeat mo 98.3 7E-08 2.4E-12 88.0 -0.9 59 157-219 38-96 (272)
64 3rgz_A Protein brassinosteroid 98.3 2.7E-07 9.4E-12 96.7 3.4 103 158-260 267-379 (768)
65 4glp_A Monocyte differentiatio 98.3 7.4E-08 2.5E-12 89.5 -0.9 109 95-219 66-180 (310)
66 1xku_A Decorin; proteoglycan, 98.3 1.1E-07 3.7E-12 89.2 -0.1 190 155-365 71-272 (330)
67 4ecn_A Leucine-rich repeat pro 98.3 5.7E-08 1.9E-12 102.3 -2.4 37 158-196 546-584 (876)
68 2o6q_A Variable lymphocyte rec 98.2 1.2E-07 4E-12 86.4 -0.3 152 160-337 37-191 (270)
69 1xku_A Decorin; proteoglycan, 98.2 2E-07 6.8E-12 87.4 1.2 169 155-337 95-273 (330)
70 3g06_A SSPH2 (leucine-rich rep 98.2 8.2E-07 2.8E-11 90.3 5.8 91 122-239 61-151 (622)
71 3bz5_A Internalin-J, INLJ; leu 98.2 7.1E-07 2.4E-11 87.6 5.1 178 122-338 64-244 (457)
72 2z62_A TOLL-like receptor 4, v 98.2 9.8E-08 3.4E-12 87.1 -1.0 121 160-285 28-158 (276)
73 1p9a_G Platelet glycoprotein I 98.2 3E-07 1E-11 84.6 2.3 192 160-385 31-226 (290)
74 3goz_A Leucine-rich repeat-con 98.2 1.5E-07 5.1E-12 89.5 -0.2 63 157-219 47-120 (362)
75 2z7x_B TOLL-like receptor 1, v 98.2 8.3E-07 2.9E-11 88.6 4.7 150 156-307 216-407 (520)
76 3goz_A Leucine-rich repeat-con 98.2 9.2E-08 3.1E-12 91.0 -2.6 37 160-196 80-120 (362)
77 2xwt_C Thyrotropin receptor; s 98.2 1.6E-06 5.3E-11 77.2 5.5 188 122-336 31-235 (239)
78 2o6q_A Variable lymphocyte rec 98.2 5.3E-07 1.8E-11 82.0 2.0 64 155-219 56-120 (270)
79 1wwl_A Monocyte differentiatio 98.1 1.3E-07 4.4E-12 88.0 -2.4 37 159-195 94-131 (312)
80 2ell_A Acidic leucine-rich nuc 98.1 5.8E-07 2E-11 75.3 1.8 64 273-338 92-158 (168)
81 2ra8_A Uncharacterized protein 98.1 2.2E-07 7.5E-12 88.0 -1.2 101 111-219 96-204 (362)
82 1h6t_A Internalin B; cell adhe 98.1 3.9E-07 1.3E-11 83.8 0.4 147 156-338 64-211 (291)
83 1p9a_G Platelet glycoprotein I 98.1 6.5E-07 2.2E-11 82.3 1.2 162 156-325 51-222 (290)
84 3e4g_A ATP synthase subunit S, 98.1 2.8E-07 9.7E-12 77.2 -1.5 61 160-221 61-127 (176)
85 1m9s_A Internalin B; cell inva 98.1 3.1E-07 1E-11 93.2 -1.5 60 156-219 61-120 (605)
86 4glp_A Monocyte differentiatio 98.1 1.4E-07 4.6E-12 87.8 -3.9 61 159-219 63-128 (310)
87 3j0a_A TOLL-like receptor 5; m 98.1 5.8E-06 2E-10 87.6 8.1 14 247-260 424-437 (844)
88 4eco_A Uncharacterized protein 98.0 3.9E-07 1.3E-11 93.4 -1.1 177 151-336 345-545 (636)
89 2z62_A TOLL-like receptor 4, v 98.0 2.9E-07 9.8E-12 83.9 -2.3 173 155-337 47-234 (276)
90 1ziw_A TOLL-like receptor 3; i 98.0 7.2E-07 2.5E-11 92.1 0.1 15 380-394 580-594 (680)
91 1h6t_A Internalin B; cell adhe 98.0 1.8E-06 6.3E-11 79.3 2.8 126 156-310 86-211 (291)
92 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 2.6E-05 8.8E-10 78.6 11.1 61 156-219 72-132 (562)
93 2e31_A FBS1, F-box only protei 98.0 3.1E-06 1.1E-10 76.7 3.5 37 13-49 48-85 (297)
94 1ziw_A TOLL-like receptor 3; i 98.0 2E-06 6.9E-11 88.8 2.4 179 154-337 399-594 (680)
95 3g06_A SSPH2 (leucine-rich rep 98.0 3.1E-06 1E-10 86.1 3.6 113 208-337 181-294 (622)
96 1m9s_A Internalin B; cell inva 98.0 1.7E-06 6E-11 87.7 1.6 162 158-337 41-207 (605)
97 2ft3_A Biglycan; proteoglycan, 97.9 2.1E-06 7.3E-11 80.4 1.8 101 159-261 53-159 (332)
98 2je0_A Acidic leucine-rich nuc 97.9 6E-07 2.1E-11 73.6 -2.4 61 273-335 85-148 (149)
99 3m19_A Variable lymphocyte rec 97.9 3.4E-06 1.2E-10 75.6 2.3 59 160-219 35-94 (251)
100 3l2o_B F-box only protein 4; s 97.9 3.3E-06 1.1E-10 75.7 1.6 35 15-49 4-38 (312)
101 3e4g_A ATP synthase subunit S, 97.8 7.2E-06 2.4E-10 68.6 2.9 87 123-223 62-154 (176)
102 4ezg_A Putative uncharacterize 97.8 2E-05 6.9E-10 67.7 5.7 84 245-337 84-169 (197)
103 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 3.4E-05 1.2E-09 77.7 7.9 239 112-380 266-523 (562)
104 1a9n_A U2A', U2A'; complex (nu 97.8 1.7E-05 5.8E-10 66.8 4.4 63 273-337 85-150 (176)
105 4ay9_X Follicle-stimulating ho 97.7 4.8E-05 1.6E-09 71.7 7.4 171 160-337 30-212 (350)
106 1xeu_A Internalin C; cellular 97.7 1.5E-05 5.1E-10 72.0 3.2 36 157-195 60-95 (263)
107 3cvr_A Invasion plasmid antige 97.7 1.7E-05 5.9E-10 79.6 3.7 31 160-195 80-110 (571)
108 3m19_A Variable lymphocyte rec 97.6 2.1E-05 7.3E-10 70.3 3.3 146 229-387 59-213 (251)
109 2v70_A SLIT-2, SLIT homolog 2 97.6 1.2E-05 4.2E-10 70.5 1.1 143 160-324 32-179 (220)
110 3v7d_B Cell division control p 97.6 1.8E-05 6E-10 77.3 2.1 43 10-52 9-51 (464)
111 3un9_A NLR family member X1; l 97.6 7.2E-06 2.5E-10 78.1 -1.2 167 159-338 71-250 (372)
112 2v9t_B SLIT homolog 2 protein 97.5 2.2E-05 7.5E-10 68.8 1.9 144 160-325 32-179 (220)
113 1jl5_A Outer protein YOPM; leu 97.5 2.6E-05 8.8E-10 76.4 2.5 154 159-338 214-368 (454)
114 4g8a_A TOLL-like receptor 4; l 97.5 1.3E-05 4.6E-10 81.5 0.2 128 246-384 466-597 (635)
115 2o6s_A Variable lymphocyte rec 97.5 8.8E-06 3E-10 70.6 -1.1 146 159-337 27-175 (208)
116 3e6j_A Variable lymphocyte rec 97.5 0.00016 5.4E-09 63.7 6.8 144 229-386 40-192 (229)
117 1jl5_A Outer protein YOPM; leu 97.5 8E-05 2.7E-09 72.9 4.9 95 159-260 172-268 (454)
118 2ovr_B FBW7, F-BOX/WD repeat p 97.4 6.6E-05 2.2E-09 72.9 3.9 42 8-49 11-52 (445)
119 1a9n_A U2A', U2A'; complex (nu 97.4 1.4E-05 4.9E-10 67.3 -1.6 130 156-308 15-149 (176)
120 2ell_A Acidic leucine-rich nuc 97.3 2.4E-05 8.1E-10 65.3 -0.5 60 159-219 23-82 (168)
121 1p22_A F-BOX/WD-repeat protein 97.3 6.9E-05 2.4E-09 72.6 2.2 39 11-49 6-48 (435)
122 1xeu_A Internalin C; cellular 97.3 6.5E-05 2.2E-09 67.8 1.5 146 156-312 37-185 (263)
123 4g8a_A TOLL-like receptor 4; l 97.2 0.00011 3.7E-09 74.7 2.4 74 229-306 469-549 (635)
124 2v9t_B SLIT homolog 2 protein 97.2 0.00019 6.4E-09 62.8 3.4 84 246-337 53-138 (220)
125 3e6j_A Variable lymphocyte rec 97.2 0.0001 3.6E-09 64.9 1.7 35 185-219 40-75 (229)
126 2v70_A SLIT-2, SLIT homolog 2 97.0 0.00026 9E-09 61.8 3.0 58 245-306 77-136 (220)
127 2je0_A Acidic leucine-rich nuc 97.0 1.8E-05 6.3E-10 64.5 -4.3 128 158-306 15-147 (149)
128 2xot_A Amphoterin-induced prot 97.0 0.00011 3.8E-09 69.5 0.3 98 160-260 39-147 (361)
129 4ay9_X Follicle-stimulating ho 96.9 0.00056 1.9E-08 64.3 4.5 84 122-219 30-115 (350)
130 3cvr_A Invasion plasmid antige 96.9 0.00026 8.8E-09 71.1 1.7 139 158-309 98-240 (571)
131 1ds9_A Outer arm dynein; leuci 96.8 8.1E-06 2.8E-10 70.3 -8.6 106 156-285 44-149 (198)
132 2xot_A Amphoterin-induced prot 96.8 0.00049 1.7E-08 65.0 2.4 143 185-337 39-199 (361)
133 2o6s_A Variable lymphocyte rec 96.6 0.0012 4.1E-08 56.8 3.8 85 245-337 48-134 (208)
134 3un9_A NLR family member X1; l 96.6 6.2E-05 2.1E-09 71.6 -5.0 136 160-309 101-249 (372)
135 3sb4_A Hypothetical leucine ri 96.4 0.0053 1.8E-07 57.0 6.6 222 95-336 27-306 (329)
136 1w8a_A SLIT protein; signaling 96.3 0.00086 2.9E-08 57.1 0.7 37 160-196 29-65 (192)
137 2ra8_A Uncharacterized protein 96.3 0.016 5.5E-07 54.5 9.5 10 229-238 139-148 (362)
138 2wfh_A SLIT homolog 2 protein 96.1 0.0028 9.5E-08 54.0 2.9 52 272-325 98-153 (193)
139 2wfh_A SLIT homolog 2 protein 96.1 0.0021 7.2E-08 54.7 2.2 60 273-337 51-112 (193)
140 1io0_A Tropomodulin; LRR prote 96.1 0.0016 5.5E-08 55.1 1.3 126 266-395 26-162 (185)
141 1w8a_A SLIT protein; signaling 96.0 0.0043 1.5E-07 52.7 3.9 61 245-309 74-136 (192)
142 1dce_A Protein (RAB geranylger 96.0 0.0027 9.2E-08 63.8 2.7 13 179-191 403-415 (567)
143 2o6r_A Variable lymphocyte rec 96.0 0.0036 1.2E-07 52.2 3.0 14 324-337 97-110 (177)
144 1io0_A Tropomodulin; LRR prote 95.8 0.0022 7.5E-08 54.2 0.8 88 246-334 33-128 (185)
145 1dce_A Protein (RAB geranylger 95.7 0.00098 3.3E-08 67.0 -2.1 119 161-305 442-566 (567)
146 1ds9_A Outer arm dynein; leuci 95.6 0.0019 6.4E-08 55.2 -0.1 17 374-390 164-180 (198)
147 3g39_A Variable lymphocyte rec 95.6 0.013 4.4E-07 48.6 5.0 97 229-329 30-134 (170)
148 4b8c_D Glucose-repressible alc 95.5 0.0014 4.7E-08 68.0 -1.8 142 159-308 172-325 (727)
149 4b8c_D Glucose-repressible alc 95.4 0.0035 1.2E-07 65.0 0.9 57 229-290 270-329 (727)
150 2o6r_A Variable lymphocyte rec 95.3 0.023 7.7E-07 47.3 5.5 101 229-337 28-134 (177)
151 4fdw_A Leucine rich hypothetic 95.1 0.011 3.9E-07 56.4 3.3 57 272-334 267-330 (401)
152 2r9u_A Variable lymphocyte rec 94.7 0.038 1.3E-06 45.9 5.2 78 229-310 33-116 (174)
153 3sb4_A Hypothetical leucine ri 94.7 0.074 2.5E-06 49.1 7.7 22 174-195 215-236 (329)
154 2r9u_A Variable lymphocyte rec 92.7 0.023 7.8E-07 47.3 0.3 54 249-306 33-88 (174)
155 3g39_A Variable lymphocyte rec 92.7 0.061 2.1E-06 44.4 2.9 13 273-285 51-63 (170)
156 4fdw_A Leucine rich hypothetic 90.9 0.59 2E-05 44.4 8.0 166 155-337 175-355 (401)
157 2ifg_A High affinity nerve gro 90.5 0.25 8.6E-06 45.7 5.0 76 245-324 52-129 (347)
158 3rw6_A Nuclear RNA export fact 90.1 0.11 3.7E-06 46.4 1.9 85 247-333 168-257 (267)
159 2ifg_A High affinity nerve gro 86.1 0.18 6E-06 46.8 0.6 85 245-338 27-114 (347)
160 1pgv_A TMD-1, tropomodulin TMD 81.9 0.15 5.2E-06 43.1 -1.6 126 266-395 31-168 (197)
161 4fs7_A Uncharacterized protein 80.2 0.99 3.4E-05 42.5 3.2 98 272-389 293-393 (394)
162 3rw6_A Nuclear RNA export fact 78.5 0.25 8.6E-06 44.0 -1.5 39 158-196 168-207 (267)
163 4fs7_A Uncharacterized protein 72.8 6.2 0.00021 36.9 6.6 35 155-193 248-284 (394)
164 4gt6_A Cell surface protein; l 65.1 3.4 0.00012 38.8 2.9 57 244-306 329-385 (394)
165 4gt6_A Cell surface protein; l 64.4 3.8 0.00013 38.4 3.1 79 244-335 306-386 (394)
166 1pgv_A TMD-1, tropomodulin TMD 56.9 4 0.00014 34.3 1.5 20 176-195 32-51 (197)
167 4h09_A Hypothetical leucine ri 51.3 7.9 0.00027 35.8 2.8 81 245-335 259-341 (379)
168 4h09_A Hypothetical leucine ri 37.4 20 0.00068 33.0 3.2 58 244-306 281-340 (379)
169 3rfe_A Platelet glycoprotein I 30.1 33 0.0011 26.2 2.9 54 272-326 26-83 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.3e-21 Score=196.83 Aligned_cols=153 Identities=11% Similarity=0.201 Sum_probs=95.3
Q ss_pred CCCcCCCCChHHHHHHHhcCC-hHHHHHHhhhhhhhhhhccc-CceeeEecCccccccCCCCchhhHHHHHHHHHHHHHh
Q 014317 12 SEDLINRLPDDILVNIISHLT-LKEAARTSVLSNRWRNLWTF-TNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLEL 89 (427)
Q Consensus 12 ~~D~is~LPd~iL~~Ils~L~-~~d~~r~s~vskrW~~lw~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 89 (427)
..|+|+.|||||+.+||+||| ++|++++++|||||+++... ...+.+...... ... ..+.+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~----------~~~-------~~~~~ 64 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV----------SPA-------TVIRR 64 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS----------CHH-------HHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc----------CHH-------HHHhh
Confidence 358999999999999999999 99999999999999988221 112333322110 010 22222
Q ss_pred ccCCCeeEEEEEEecC--------CCCCccHHHHHHHHhc--CCceEEEEEecCCCCCccccccccccccccCCCCCCCC
Q 014317 90 HRGSTINEFKVRFDLC--------DFHQSDITNWVYTVLG--KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGI 159 (427)
Q Consensus 90 ~~~~~l~~l~l~~~~~--------~~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~ 159 (427)
-+.++++.+..... ......+..|+..... +++++|++..+... ...+..+ ...+
T Consensus 65 --~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~~~~~l---------~~~~ 129 (594)
T 2p1m_B 65 --FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT----DDCLELI---------AKSF 129 (594)
T ss_dssp --CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC----HHHHHHH---------HHHC
T ss_pred --CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc----HHHHHHH---------HHhC
Confidence 23489998876321 1112456778887653 58999999865321 0111111 1257
Q ss_pred CCCcEEEEeeE-EeChhhHHHHHhcCCccceeeeccCC
Q 014317 160 KFLRCLHFKTV-NVNGKDIELFIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 160 ~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~l~~c~ 196 (427)
++|++|+|.+| .+++..+..++..||+|++|++.+|.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 89999999988 57777788888889999999998775
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.6e-20 Score=191.66 Aligned_cols=103 Identities=11% Similarity=0.176 Sum_probs=59.7
Q ss_pred cCCCcCC----CCChHHHHHHHhcC-ChHHHHHHhhhhhhhhhhcccCce-eeEecCccccccCCCCchhhHHHHHHHHH
Q 014317 11 ISEDLIN----RLPDDILVNIISHL-TLKEAARTSVLSNRWRNLWTFTNS-LEFDASESLWNVGFGNLEQERSKYINWVN 84 (427)
Q Consensus 11 ~~~D~is----~LPd~iL~~Ils~L-~~~d~~r~s~vskrW~~lw~~~~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 84 (427)
++.|+++ +||||++.+||+|| +++|++++++|||||++++..... +.+.. .+. ....
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~----------------~~~~ 66 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYT----------------ATPD 66 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGG----------------SCHH
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccc----------------cChH
Confidence 3456665 89999999999999 899999999999999998543321 22211 110 0112
Q ss_pred HHHHhccCCCeeEEEEEEecC--------CCCCccHHHHHHHHhc--CCceEEEEEec
Q 014317 85 NVLELHRGSTINEFKVRFDLC--------DFHQSDITNWVYTVLG--KRVQYIKLDLW 132 (427)
Q Consensus 85 ~~l~~~~~~~l~~l~l~~~~~--------~~~~~~~~~wl~~~~~--~~v~~L~l~~~ 132 (427)
.++.+.+. ++++.++.... .........|+..... +++++|++..+
T Consensus 67 ~~~~~~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 122 (592)
T 3ogk_B 67 RLSRRFPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM 122 (592)
T ss_dssp HHHHHCTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHhCCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence 23333333 88888765211 1122344567766543 57888888754
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=3e-20 Score=176.12 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=87.3
Q ss_pred CCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc---CceeeEecCccccccCCCCchhhHHHHHHHHHHHHH
Q 014317 12 SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF---TNSLEFDASESLWNVGFGNLEQERSKYINWVNNVLE 88 (427)
Q Consensus 12 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 88 (427)
....|++||||++.+||++|+.+|+++++.|||+|+++... ...+++....+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------ 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------ 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence 34568999999999999999999999999999999998532 112333222111
Q ss_pred hccCCCeeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEe
Q 014317 89 LHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFK 168 (427)
Q Consensus 89 ~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~ 168 (427)
...+......+++.+.+...... . .++.+..+++|++|+|.
T Consensus 61 ------------------------~~~~~~~~~~~l~~L~l~~n~l~-----~----------~~~~~~~~~~L~~L~L~ 101 (336)
T 2ast_B 61 ------------------------PDVTGRLLSQGVIAFRCPRSFMD-----Q----------PLAEHFSPFRVQHMDLS 101 (336)
T ss_dssp ------------------------HHHHHHHHHTTCSEEECTTCEEC-----S----------CCCSCCCCBCCCEEECT
T ss_pred ------------------------HHHHHhhhhccceEEEcCCcccc-----c----------cchhhccCCCCCEEEcc
Confidence 11222222334444444321100 0 11113456788888888
Q ss_pred eEEeChhhHHHHHhcCCccceeeeccCCCcee-EEEecCccccceEEEEecC
Q 014317 169 TVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR-LRVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 169 ~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l~i~~~~~~L~~L~l~~c~ 219 (427)
++.+.+..+..++..||+|++|++.+|...+. ...-+.+++|++|.+++|.
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 87777766777777888888888877742211 1111234667777666663
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.14 E-value=6.3e-11 Score=111.48 Aligned_cols=173 Identities=21% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE----------
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE---------- 225 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~---------- 225 (427)
+..+++|++|+|.++.+. .+...+..++.|+.|++.++........-..+++|+.|.+++|.....+.
T Consensus 100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 344556666666555443 11122344556666666555322100001123555666665554322211
Q ss_pred --EECCceeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCC
Q 014317 226 --ISAPSLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELP 299 (427)
Q Consensus 226 --i~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~ 299 (427)
-..++|++|++.++.. +..+..++.|+.+++..+.... +...+..+++|+.|++++|.... .+..+..++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 253 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----CchhhccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence 1256677776666532 2235567777777777666332 22224577788888888754444 555666777
Q ss_pred ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
+|++|+++.+.... . ++.-+..+++|++|+|+++.
T Consensus 254 ~L~~L~L~~n~~~~-~---~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 254 PLKRLILKDCSNLL-T---LPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCEEECTTCTTCC-B---CCTTGGGCTTCCEEECTTCT
T ss_pred CCCEEECCCCCchh-h---cchhhhcCCCCCEEeCCCCC
Confidence 78887774321111 1 12234677888888887553
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=3.5e-11 Score=122.45 Aligned_cols=174 Identities=19% Similarity=0.248 Sum_probs=102.8
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE---EEecCccccceEEEEecCCcc--------EEE
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL---RVIGSSIQLKYLEIQSCYLME--------EIE 225 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~--------~~~ 225 (427)
..+++|++|+|.++.+.+..+..+...||+|++|++.+|..+... .+...+++|++|.+++|. +. .+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 367899999999999998888888778999999999999644321 122246788888877664 11 111
Q ss_pred EECCceeEEEEeeee--e-----eeeccCCcccceeeeeeccc-------------------------------------
Q 014317 226 ISAPSLLSFRYYGQA--I-----KINIENVPQLVDVSIRGSHT------------------------------------- 261 (427)
Q Consensus 226 i~~p~L~~L~~~~~~--~-----~~~~~~~~~L~~l~l~~~~~------------------------------------- 261 (427)
...|+|++|++.++. . .....++++|+.+.+..+..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 123566666655432 0 00112234455555443310
Q ss_pred -------------cc-cchhhccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHH
Q 014317 262 -------------FR-VTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMK 324 (427)
Q Consensus 262 -------------~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~ 324 (427)
.. ....+..++..+++|+.|++++|. +. ....+..+++|++|.+..+ ....++..+..
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~----~~~~~l~~l~~ 335 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY----IEDAGLEVLAS 335 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG----GHHHHHHHHHH
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc----cCHHHHHHHHH
Confidence 00 001122223356777777777754 43 2233456778888887532 23344566667
Q ss_pred hCCCccEEEEEe
Q 014317 325 ACPFLQKLILQL 336 (427)
Q Consensus 325 ~~p~L~~L~i~~ 336 (427)
.||+|++|.|..
T Consensus 336 ~~~~L~~L~L~~ 347 (594)
T 2p1m_B 336 TCKDLRELRVFP 347 (594)
T ss_dssp HCTTCCEEEEEC
T ss_pred hCCCCCEEEEec
Confidence 788888888854
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.98 E-value=7.2e-11 Score=120.15 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=40.4
Q ss_pred ccccccCCCceEEEEeccceee---cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEE
Q 014317 269 GPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQ 335 (427)
Q Consensus 269 ~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 335 (427)
..++..+++|+.|++++|. +. ....+..+++|++|++. + .....++..+..+||+|++|+|.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~---~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-N---VIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-G---GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-C---ccCHHHHHHHHHhCCCCCEEEee
Confidence 3445667788888888755 43 22334677888888875 1 11334566677778888888887
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.91 E-value=3.3e-10 Score=106.55 Aligned_cols=221 Identities=16% Similarity=0.206 Sum_probs=148.1
Q ss_pred HHHHhccCCCeeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcE
Q 014317 85 NVLELHRGSTINEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRC 164 (427)
Q Consensus 85 ~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~ 164 (427)
..+.......++.+.+....-. .+...+. .-.+++.|.+...... .+|..+..+++|++
T Consensus 73 ~~l~~~~~~~l~~L~L~~n~l~----~lp~~l~--~l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L~~ 131 (328)
T 4fcg_A 73 DLLEDATQPGRVALELRSVPLP----QFPDQAF--RLSHLQHMTIDAAGLM---------------ELPDTMQQFAGLET 131 (328)
T ss_dssp HHHHHHTSTTCCEEEEESSCCS----SCCSCGG--GGTTCSEEEEESSCCC---------------CCCSCGGGGTTCSE
T ss_pred HHHhcccccceeEEEccCCCch----hcChhhh--hCCCCCEEECCCCCcc---------------chhHHHhccCCCCE
Confidence 3333333444888888643211 1111111 1358899999765321 24555778999999
Q ss_pred EEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE--Ee--------cCccccceEEEEecCCccEEEE---ECCce
Q 014317 165 LHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR--VI--------GSSIQLKYLEIQSCYLMEEIEI---SAPSL 231 (427)
Q Consensus 165 L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~--------~~~~~L~~L~l~~c~~l~~~~i---~~p~L 231 (427)
|+|.++.+. .+..-+..++.|+.|++.+|...+.+. +. ..+++|+.|.++++. +..+.- ..++|
T Consensus 132 L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L 208 (328)
T 4fcg_A 132 LTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNL 208 (328)
T ss_dssp EEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTC
T ss_pred EECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCC
Confidence 999998876 233337789999999999987554321 10 125899999999986 443321 24899
Q ss_pred eEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317 232 LSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR 307 (427)
Q Consensus 232 ~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 307 (427)
++|++.++.. +..+..++.|+.+++..+... ..+...+..+++|+.|++++|.... .+..+..+++|++|+|+
T Consensus 209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL---RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC---CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CEEEccCCCCCcCchhhccCCCCCEEECcCCcch---hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 9999988743 234677899999999886632 2344456789999999999866555 67777889999999985
Q ss_pred EEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317 308 VTTPNRESLLGLTCIMKACPFLQKLILQL 336 (427)
Q Consensus 308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 336 (427)
.+.... .++.-+..+++|+.+.+..
T Consensus 286 ~n~~~~----~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 286 GCVNLS----RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCC----CCCGGGGGSCTTCEEECCG
T ss_pred CCCchh----hccHHHhhccCceEEeCCH
Confidence 432211 2344567899999998863
No 8
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.87 E-value=1.4e-09 Score=72.38 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhcc
Q 014317 12 SEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWT 51 (427)
Q Consensus 12 ~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~ 51 (427)
..+.|+.||+|++.+||++||.+|.++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567999999999999999999999999999999998743
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.7e-08 Score=95.65 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=138.2
Q ss_pred CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE--EEecCccccceEEEEecCCccEEEE----E
Q 014317 154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL--RVIGSSIQLKYLEIQSCYLMEEIEI----S 227 (427)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l--~i~~~~~~L~~L~l~~c~~l~~~~i----~ 227 (427)
..+..+++|++|+|.++.+..-. ...+..+++|+.|++.++...... ..-..+++|+.|.++++..+..+.. .
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 34678899999999988776421 233678999999999887533211 1223468999999999865555532 2
Q ss_pred CCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c-cc---ccCCC
Q 014317 228 APSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M-QF---SLFEL 298 (427)
Q Consensus 228 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-~~---~~~~~ 298 (427)
.++|++|++.++.. +..+..++.|+.+++..+... .....+...+++++.|++++ ..+. . +. .....
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDVTSSVECLELRD-TDLDTFHFSELSTGETN 248 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST---THHHHHHHHTTTEEEEEEES-CBCTTCCCC------CC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc---cchhhhhhhcccccEEECCC-Ccccccccccccccccc
Confidence 47899999987643 234567888999999877632 22233345789999999997 4443 1 11 12345
Q ss_pred CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHH
Q 014317 299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELA 376 (427)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~ 376 (427)
..++.++++...-.......++..+..+++|+.|+++.+.-...+... + ....+|+.+.+.+- .+....+.+.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~---~--~~l~~L~~L~L~~N~~~~~~~~l~~l 323 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYL 323 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT---T--TTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH---H--hcCCCCCEEEeeCCCccCcCCCcHHH
Confidence 667777775443333234456677889999999999866432211110 0 13568999988864 3444445554
Q ss_pred HHHHhc
Q 014317 377 QYLFQN 382 (427)
Q Consensus 377 ~~ll~~ 382 (427)
...+.+
T Consensus 324 ~~~~~~ 329 (353)
T 2z80_A 324 SRWLNK 329 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.81 E-value=3.2e-09 Score=98.62 Aligned_cols=212 Identities=15% Similarity=0.084 Sum_probs=131.3
Q ss_pred CCCCCCCcEEEEeeEEeChh-hHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-----EECC
Q 014317 156 LSGIKFLRCLHFKTVNVNGK-DIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-----ISAP 229 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-----i~~p 229 (427)
+..+++|++|+|.++.+... .....+..++.|+.|++.++...........+++|++|.++++. +..+. ...+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence 46889999999998776532 11122446899999999988644322222346889999887654 22111 1247
Q ss_pred ceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeE
Q 014317 230 SLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLID 303 (427)
Q Consensus 230 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~ 303 (427)
+|++|++.++... ..+..++.|+.+++..+.... ......+..+++|+.|++++ ..+. .+..+..+++|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--ccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCE
Confidence 8999998876433 235667889999988765211 12445567889999999998 4444 3566778889999
Q ss_pred EEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec--eecCccHHHHHHHH
Q 014317 304 LRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG--FLGRQFDVELAQYL 379 (427)
Q Consensus 304 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~l 379 (427)
|+++.+.-..... ..+..+++|+.|+++.+.-...... . +. ....+|+.+.+.+ +.+......+.+++
T Consensus 204 L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~--~-~~-~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 204 LNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSKKQ--E-LQ-HFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp EECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCCBCSSS--S-CC-CCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred EECCCCccCccCh----hhccCcccCCEeECCCCCCcccCHH--H-HH-hhhccCCEEEccCCCeecccChHHHHHHH
Confidence 9885432211111 1246789999999976532211110 0 11 1124899999876 34544444555554
No 11
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.79 E-value=1.2e-09 Score=102.03 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=155.3
Q ss_pred ccHHHHHHHHhc--CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCcc
Q 014317 110 SDITNWVYTVLG--KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLL 187 (427)
Q Consensus 110 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 187 (427)
..+...+..... +++++|++...... .+++. .+..+++|+.|+|.++.+.+.. . +..++.|
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L 82 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLS-----QISAA---------DLAPFTKLELLNLSSNVLYETL--D-LESLSTL 82 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCC-----CCCHH---------HHTTCTTCCEEECTTSCCEEEE--E-ETTCTTC
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccC-----cCCHH---------HhhCCCcCCEEECCCCcCCcch--h-hhhcCCC
Confidence 456666665543 47888888655321 22222 2457899999999987664321 1 6789999
Q ss_pred ceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeeeee----eeccCCcccceeeeeecccc
Q 014317 188 DRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTF 262 (427)
Q Consensus 188 e~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~ 262 (427)
+.|++.++.- ..+. ..++|+.|.++++. +..+... .++|++|++.++... ..+..++.|+.++++.+...
T Consensus 83 ~~L~Ls~n~l-~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 83 RTLDLNNNYV-QELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CEEECCSSEE-EEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CEEECcCCcc-cccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 9999998842 2222 23789999998876 5655444 489999999877432 34566788999999877643
Q ss_pred ccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCC
Q 014317 263 RVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGR 341 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~ 341 (427)
. .....+...+++|+.|++++ +.+. .+ ....+++|++|+++.+.-. . +..-+..+++|+.|+++.+.-..
T Consensus 158 ~--~~~~~~~~~l~~L~~L~L~~-N~l~~~~-~~~~l~~L~~L~Ls~N~l~--~---l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 158 T--VNFAELAASSDTLEHLNLQY-NFIYDVK-GQVVFAKLKTLDLSSNKLA--F---MGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp E--EEGGGGGGGTTTCCEEECTT-SCCCEEE-CCCCCTTCCEEECCSSCCC--E---ECGGGGGGTTCSEEECTTSCCCE
T ss_pred c--ccHHHHhhccCcCCEEECCC-CcCcccc-cccccccCCEEECCCCcCC--c---chhhhcccCcccEEECcCCcccc
Confidence 2 11233445789999999998 4444 33 2335789999998543221 1 11225678999999997653221
Q ss_pred CCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317 342 RLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392 (427)
Q Consensus 342 ~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 392 (427)
.+.. + ....+|+.+.+.+-...+. .....+...+.|+.+.+.
T Consensus 229 l~~~----~--~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 229 IEKA----L--RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECTT----C--CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred hhhH----h--hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 1111 1 1346888888876544322 233566777888877765
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.75 E-value=3.1e-08 Score=93.94 Aligned_cols=224 Identities=15% Similarity=0.109 Sum_probs=129.0
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE----ECCceeE
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI----SAPSLLS 233 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~ 233 (427)
++|++|+|.++.+..-.- ..+..++.|+.|++.++...+ +.- -..+++|++|.++++. +..+.. ..++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccCH-HHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 578888888766543110 124667888888887774322 111 1234678888887765 333321 2478888
Q ss_pred EEEeeeeee-----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317 234 FRYYGQAIK-----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR 307 (427)
Q Consensus 234 L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 307 (427)
|++.++... ..+..++.|+.+++..+.. +.......+..+++|+.|+++++.-.. .+..+..+++|++|+++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 888766332 1456788999999987632 111222345688999999999843222 46667788899999886
Q ss_pred EEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhcccccc
Q 014317 308 VTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLE 387 (427)
Q Consensus 308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~ 387 (427)
.+.- ... ...++..+++|+.|+++.+.-......... ..-....++.+.+.+..-....+.-+...+.+.+.|+
T Consensus 207 ~n~l--~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 207 MKQH--ILL--LEIFVDVTSSVECLELRDTDLDTFHFSELS--TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp CSCS--TTH--HHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CCcc--ccc--hhhhhhhcccccEEECCCCccccccccccc--cccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 5422 122 133566799999999987643221100000 0012334555555554433333333334456666777
Q ss_pred ceEEEee
Q 014317 388 KLIIEPS 394 (427)
Q Consensus 388 ~l~i~~~ 394 (427)
.+.+..+
T Consensus 281 ~L~Ls~N 287 (353)
T 2z80_A 281 ELEFSRN 287 (353)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 7666543
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.70 E-value=5.5e-09 Score=98.76 Aligned_cols=212 Identities=17% Similarity=0.198 Sum_probs=124.4
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLS 233 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~ 233 (427)
+..+++|++|+|.++.+.+-.- +..++.|+.|++.+|.....+.....+++|+.|.+++|. +..+. + ..++|++
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence 4566777777777766554211 566777777777777544432222345677777777665 22111 1 2467777
Q ss_pred EEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEc
Q 014317 234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTT 310 (427)
Q Consensus 234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 310 (427)
|++.++.... .+..++.|+.+.+..+...... . +..+++|+.|.+++| .+. .+. +..+++|++|+++.+.
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT----P-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCc----h-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCc
Confidence 7776653221 1455667777777665532211 1 467788888888873 333 333 6677888888875432
Q ss_pred cCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceE
Q 014317 311 PNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLI 390 (427)
Q Consensus 311 ~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~ 390 (427)
-. .. ..+..+++|+.|+++.+.-... .. . ....+|+.+.+.+..-..... ..+...+.|+.+.
T Consensus 255 l~--~~----~~~~~l~~L~~L~l~~n~l~~~----~~-~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 255 IS--DI----NAVKDLTKLKMLNVGSNQISDI----SV-L--NNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLF 317 (347)
T ss_dssp CC--CC----GGGTTCTTCCEEECCSSCCCCC----GG-G--GGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEE
T ss_pred cC--CC----hhHhcCCCcCEEEccCCccCCC----hh-h--cCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEE
Confidence 22 21 2356788888888876532111 01 1 234678888888764332221 3456788999999
Q ss_pred EEeec
Q 014317 391 IEPSR 395 (427)
Q Consensus 391 i~~~~ 395 (427)
+..+.
T Consensus 318 L~~n~ 322 (347)
T 4fmz_A 318 LSQNH 322 (347)
T ss_dssp CCSSS
T ss_pred ccCCc
Confidence 87665
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.68 E-value=7.9e-08 Score=97.07 Aligned_cols=210 Identities=17% Similarity=0.148 Sum_probs=115.3
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe---cCccccceEEEEecCCccEEE--E-ECCce
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI---GSSIQLKYLEIQSCYLMEEIE--I-SAPSL 231 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~~~--i-~~p~L 231 (427)
.+++|+.|++.++.+....- ...+|.|+.|++.++......... ..+++|+.|.+++|. +..+. + ..++|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L 398 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 398 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred cccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence 56677777776665433210 145777777777776543322111 145677777777665 33332 2 24777
Q ss_pred eEEEEeeeeee-----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEecccee--ecccccCCCCceeEE
Q 014317 232 LSFRYYGQAIK-----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEV--YMQFSLFELPKLIDL 304 (427)
Q Consensus 232 ~~L~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~--~~~~~~~~~~~L~~L 304 (427)
++|++.++... ..+.+++.|+.+++..+.. .......+..+++|+.|.+++|.-. ..+..+..+++|+.|
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcc---cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 77777765432 1345667777777766652 2223344567788888888874322 155666777788887
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec--eecCccHHHHH-HHHHh
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG--FLGRQFDVELA-QYLFQ 381 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--f~g~~~e~~~~-~~ll~ 381 (427)
+++.+.-. +. .+..+..+++|++|+|+.+.-....... + ....+|+.+.+.+ +.+......+. .++-+
T Consensus 476 ~l~~n~l~--~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 476 DLSQCQLE--QL--SPTAFNSLSSLQVLNMASNQLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp ECTTSCCC--EE--CTTTTTTCTTCCEEECCSSCCSCCCTTT---T--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ECCCCccc--cC--ChhhhhcccCCCEEeCCCCcCCCCCHHH---h--hcccCCcEEEecCCcccCCCcchHHHHHHHHh
Confidence 77432111 11 0223456788888888755322111000 1 1245777777776 34555555555 44444
Q ss_pred cc
Q 014317 382 NA 383 (427)
Q Consensus 382 ~a 383 (427)
+.
T Consensus 547 ~~ 548 (570)
T 2z63_A 547 NS 548 (570)
T ss_dssp TG
T ss_pred cc
Confidence 43
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.67 E-value=3.2e-10 Score=109.14 Aligned_cols=231 Identities=16% Similarity=0.120 Sum_probs=127.7
Q ss_pred CCCCCCCcEEEEeeEEeC---h---h---hHHHHHhcCCccceeeeccCCCce----eE-EEecCccccceEEEEecCCc
Q 014317 156 LSGIKFLRCLHFKTVNVN---G---K---DIELFIQNCPLLDRLCVDHSKTLV----RL-RVIGSSIQLKYLEIQSCYLM 221 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~---~---~---~l~~ll~~cp~Le~L~l~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l 221 (427)
+..+++|++|+|.++.+. + . .+...+..++.|+.|+|.++.... .+ ..-..+++|++|.+++|. +
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence 457888999998887533 1 1 233445678999999998875332 01 011235788888888876 2
Q ss_pred cEEE---E-EC-------------CceeEEEEeeeeee--------eeccCCcccceeeeeeccccc--cchhhcccccc
Q 014317 222 EEIE---I-SA-------------PSLLSFRYYGQAIK--------INIENVPQLVDVSIRGSHTFR--VTYFVGPIISC 274 (427)
Q Consensus 222 ~~~~---i-~~-------------p~L~~L~~~~~~~~--------~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~ 274 (427)
.... + .+ |+|++|.+.++... ..+..++.|+.+.+..+.... +.......+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 2110 0 01 78888888766432 123456788888887766321 11122224567
Q ss_pred CCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHh--CCCccEEEEEeccCCCCCCcc
Q 014317 275 FPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKA--CPFLQKLILQLNDHGRRLGKK 346 (427)
Q Consensus 275 ~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~~~~~~~~~~ 346 (427)
+++|+.|.|++| .+. ++..+..+++|++|+|+.+.-.......+...+.. +|+|++|.|+.+.-.. .+.
T Consensus 215 ~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~g~- 291 (386)
T 2ca6_A 215 CQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAV- 291 (386)
T ss_dssp CTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH-HHH-
T ss_pred CCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH-HHH-
Confidence 888888888873 342 45556777888888874332221122233445544 7888888887543111 000
Q ss_pred cccCCCC---ccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317 347 RQQFPKY---SHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392 (427)
Q Consensus 347 ~~~~~~~---~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 392 (427)
.. ++.. ...+|+.+.+.+..-... ..++..+.+..+.++...+.
T Consensus 292 ~~-l~~~l~~~l~~L~~L~l~~N~l~~~-~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 292 RT-LKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HH-HHHHHHHHCTTCCEEECTTSBSCTT-SHHHHHHHHHHHHHTCCEEC
T ss_pred HH-HHHHHHhcCCCceEEEccCCcCCcc-hhHHHHHHHHhhhcCcchhh
Confidence 00 1211 146788888776432211 12233444444555555443
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.65 E-value=1.5e-08 Score=100.26 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=93.8
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----ECC
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SAP 229 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~p 229 (427)
.+.++++|++|+|.++.+..-. ...+..++.|+.|+|.++...... ..-..+++|++|.++++. +..+.. ..+
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 152 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN 152 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred hhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence 4566777777777766544211 112455777777777766432211 001234677777776654 333321 136
Q ss_pred ceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEE
Q 014317 230 SLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDL 304 (427)
Q Consensus 230 ~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L 304 (427)
+|++|++.++... ..+.+++.|+.+.+..+.... .....+..+++|+.|++++|.... .+.......+|++|
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE---eChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 7777777665322 124566777777776655322 222234567777777777654433 33333344467777
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+++.+.-. ... ...+..+++|+.|+++.+
T Consensus 230 ~l~~n~l~--~~~--~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 230 SITHCNLT--AVP--YLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEESSCCC--SCC--HHHHTTCTTCCEEECCSS
T ss_pred ECcCCccc--ccC--HHHhcCccccCeeECCCC
Confidence 76443211 111 124566777777777654
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.64 E-value=6.2e-08 Score=93.14 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=78.3
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE----------
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE---------- 225 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~---------- 225 (427)
+..+++|++|+|.++.+..-. ...+..++.|+.|++.++..... .+ ..+++|+.|.++++. +..+.
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~-~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHV-DL-SLIPSLFHANVSYNL-LSTLAIPIAVEELDA 212 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBC-CG-GGCTTCSEEECCSSC-CSEEECCSSCSEEEC
T ss_pred hcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCcc-cc-ccccccceeeccccc-ccccCCCCcceEEEC
Confidence 466778888888776654311 11245677788888776643221 11 123555555555443 23221
Q ss_pred ---------EE-CCceeEEEEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc
Q 014317 226 ---------IS-APSLLSFRYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ 292 (427)
Q Consensus 226 ---------i~-~p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~ 292 (427)
.. .++|+.|++.++... ..+..++.|+.+++..+.. .......+..+++|+.|.+++ ..+. .+
T Consensus 213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~-n~l~~~~ 288 (390)
T 3o6n_A 213 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL---EKIMYHPFVKMQRLERLYISN-NRLVALN 288 (390)
T ss_dssp CSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC---CEEESGGGTTCSSCCEEECCS-SCCCEEE
T ss_pred CCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcC---CCcChhHccccccCCEEECCC-CcCcccC
Confidence 11 134444444443211 1233445555555554442 111222334555666666655 2222 33
Q ss_pred cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 293 FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 293 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
.....+++|++|+++.+.-. . +..-+..+++|+.|++..+
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~--~---~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL--H---VERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC--C---CGGGHHHHTTCSEEECCSS
T ss_pred cccCCCCCCCEEECCCCcce--e---cCccccccCcCCEEECCCC
Confidence 33345556666655332111 1 1111234566666666543
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.63 E-value=9.9e-08 Score=95.95 Aligned_cols=226 Identities=14% Similarity=0.100 Sum_probs=133.4
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEE---E-ECCceeEE
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIE---I-SAPSLLSF 234 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~---i-~~p~L~~L 234 (427)
++|++|+|+++.+.+-.. ..+..++.|++|++.++...... ..-..+++|++|.++++. +..+. + ..++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEE
Confidence 677777777765542110 11456777777777776432211 001234677777777664 33221 1 23678888
Q ss_pred EEeeeee-----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEE
Q 014317 235 RYYGQAI-----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRV 308 (427)
Q Consensus 235 ~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~ 308 (427)
+++++.. +..+.+++.|+.+++..+.... ......+..+++|+.|+++++.-.. .+..+..+++|++|.++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS--EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCcccc--ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 7776532 2346778899999998765211 1112235678999999999843222 566778888999999865
Q ss_pred EccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccc
Q 014317 309 TTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEK 388 (427)
Q Consensus 309 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~ 388 (427)
+... ... ..++..+++|+.|+++.+........... . .....+|+.+.+.+..-.+....-....+.+.+.|+.
T Consensus 182 n~~~--~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 182 SESA--FLL--EIFADILSSVRYLELRDTNLARFQFSPLP-V-DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp SBST--THH--HHHHHSTTTBSEEEEESCBCTTCCCCCCS-S-CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred Cccc--ccc--hhhHhhcccccEEEccCCccccccccccc-h-hhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 4321 221 23456799999999987643221100000 0 1235688888887754433333333344567788888
Q ss_pred eEEEeec
Q 014317 389 LIIEPSR 395 (427)
Q Consensus 389 l~i~~~~ 395 (427)
+.+..+.
T Consensus 256 l~l~~~~ 262 (549)
T 2z81_A 256 VEFDDCT 262 (549)
T ss_dssp EEEESCE
T ss_pred ccccccc
Confidence 8887654
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.63 E-value=1.3e-08 Score=96.20 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=129.2
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE--EECCceeE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE--ISAPSLLS 233 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~--i~~p~L~~ 233 (427)
+..+++|++|+|.++.+.+-. -+..++.|++|++.++....... ...+++|+.|.+++|.....+. ...++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 457788888888877665421 26678888888887775322111 2345778888887775433221 12478888
Q ss_pred EEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEcc
Q 014317 234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTP 311 (427)
Q Consensus 234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 311 (427)
|.+.++.... .+..++.|+.+++..+....+ .. +..+++++.|.+.+ ..+.....+..+++|++|+++.+.-
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~-~~~l~~L~~L~l~~-n~l~~~~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI----SP-LASLTSLHYFTAYV-NQITDITPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC----GG-GGGCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCccccc----cc-ccCCCccceeeccc-CCCCCCchhhcCCcCCEEEccCCcc
Confidence 8877664321 256677888888876653321 11 46788888888887 3433112256778888888844322
Q ss_pred CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317 312 NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII 391 (427)
Q Consensus 312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i 391 (427)
. ... . +..+++|++|+++.+.-... .. + ....+|+.+.+.+..-..- -.+...+.|+.+.+
T Consensus 234 ~--~~~---~-~~~l~~L~~L~l~~n~l~~~----~~-~--~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 T--DLS---P-LANLSQLTWLEIGTNQISDI----NA-V--KDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFL 294 (347)
T ss_dssp C--CCG---G-GTTCTTCCEEECCSSCCCCC----GG-G--TTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEEC
T ss_pred C--CCc---c-hhcCCCCCEEECCCCccCCC----hh-H--hcCCCcCEEEccCCccCCC------hhhcCCCCCCEEEC
Confidence 1 221 1 67889999999876532221 11 1 2346888888877542221 13578899999999
Q ss_pred Eeec
Q 014317 392 EPSR 395 (427)
Q Consensus 392 ~~~~ 395 (427)
..+.
T Consensus 295 ~~n~ 298 (347)
T 4fmz_A 295 NNNQ 298 (347)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 8765
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.62 E-value=4.6e-09 Score=107.13 Aligned_cols=142 Identities=14% Similarity=0.183 Sum_probs=60.5
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE------EECC
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE------ISAP 229 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~------i~~p 229 (427)
+..+++|++|++.++.+.. +..+ .+|.|+.|.+.++.......+. .+++|+.|.++++. +..+. ...+
T Consensus 303 l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred ccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence 4445555555555555421 1111 4555555555555433322111 23555555555443 22221 0135
Q ss_pred ceeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhc-cccccCCCceEEEEeccceee-cccccCCCCceeEE
Q 014317 230 SLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVG-PIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDL 304 (427)
Q Consensus 230 ~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L 304 (427)
+|++|++.++.. +..+.+++.|+.+.+..+.... ... ..+..+++|+.|++++|.-.. .+..+..+++|++|
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR---VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES---TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCC---ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 555555554421 1233445555555555443211 111 123345555555555422211 23333444455555
Q ss_pred EE
Q 014317 305 RL 306 (427)
Q Consensus 305 ~l 306 (427)
++
T Consensus 454 ~l 455 (606)
T 3vq2_A 454 KM 455 (606)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.61 E-value=8.7e-09 Score=94.61 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=20.0
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 196 (427)
+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCT
T ss_pred cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCC
Confidence 345566666666655433210 0113445666666666554
No 22
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.60 E-value=9.4e-09 Score=101.95 Aligned_cols=241 Identities=12% Similarity=0.061 Sum_probs=150.6
Q ss_pred ccHHHHHHHHhc--CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCcc
Q 014317 110 SDITNWVYTVLG--KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLL 187 (427)
Q Consensus 110 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 187 (427)
..+...+..... ++++.|++...... .+|+ ..+..+++|+.|+|+++.+.+..- +..+|.|
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~-----~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L 82 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLS-----QISA---------ADLAPFTKLELLNLSSNVLYETLD---LESLSTL 82 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCC-----CCCG---------GGGTTCTTCCEEECTTSCCEEEEE---CTTCTTC
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCC-----CCCH---------HHHhCCCCCCEEEeeCCCCCCCcc---cccCCCC
Confidence 345555544322 27888888765321 2222 235688999999999887653211 7789999
Q ss_pred ceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeeee----eeeccCCcccceeeeeecccc
Q 014317 188 DRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTF 262 (427)
Q Consensus 188 e~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~ 262 (427)
+.|+|.+|. +..+. ..++|+.|.++++. +..+... .|+|+.|++.++.. +..+.+++.|+.++++.+...
T Consensus 83 ~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 83 RTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp CEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred CEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 999999884 22222 22789999999887 5544443 48999999987743 334567889999999877643
Q ss_pred ccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCC
Q 014317 263 RVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRR 342 (427)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~ 342 (427)
. .....+...+++|+.|+|++ +.+........+++|++|+|+.+.-.. ++.-+..+++|+.|+++.+....
T Consensus 158 ~--~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~- 228 (487)
T 3oja_A 158 T--VNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLVL- 228 (487)
T ss_dssp E--EEGGGGGGGTTTCCEEECTT-SCCCEEECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred C--cChHHHhhhCCcccEEecCC-CccccccccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCcc-
Confidence 2 12233445789999999998 445422223458899999985442221 11225678999999997654221
Q ss_pred CCcccccCCC--CccCCccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317 343 LGKKRQQFPK--YSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLII 391 (427)
Q Consensus 343 ~~~~~~~~~~--~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i 391 (427)
+|. ....+|+.+.+.+-...+.. ....+...+.|+.+.+
T Consensus 229 -------lp~~l~~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 229 -------IEKALRFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAK 269 (487)
T ss_dssp -------ECTTCCCCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHH
T ss_pred -------cchhhccCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEec
Confidence 121 12457888887765444222 2244455555555544
No 23
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.58 E-value=5.5e-09 Score=98.25 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=93.3
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCcee--E-EEecCccccceEEEEecCCccEE-----EEEC
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR--L-RVIGSSIQLKYLEIQSCYLMEEI-----EISA 228 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~--l-~i~~~~~~L~~L~l~~c~~l~~~-----~i~~ 228 (427)
..+++|++|+|.++.+.+..... ++.||+|++|++.+|..+.. + .+...+++|++|.+++|..+... .-..
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 45677777777777665544433 45577777777777743332 1 11123567777777776333321 1124
Q ss_pred C-ceeEEEEeeeee-------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCC
Q 014317 229 P-SLLSFRYYGQAI-------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFEL 298 (427)
Q Consensus 229 p-~L~~L~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~ 298 (427)
| +|++|++.++.. +..+..+++|+.+++..+... .......+..+++|+.|++++|..+. ....+..+
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML--KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC--CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC--CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 6 777777766521 223456777888887766521 11122234567888888888765332 12245667
Q ss_pred CceeEEEEEEEccCCCChHHHHHHHHhCCCcc
Q 014317 299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQ 330 (427)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~ 330 (427)
++|++|+++.+ ....++..+.+.+|.|+
T Consensus 272 ~~L~~L~l~~~----i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 272 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred CCCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence 88888887433 12222334445566665
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.58 E-value=7.8e-08 Score=97.87 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=105.0
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceE-------------------EEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYL-------------------EIQ 216 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L-------------------~l~ 216 (427)
+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.... +.+ ..+++|+.| .++
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~-~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH-VDL-SLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSB-CCG-GGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred hccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCC-cCh-hhhhhhhhhhcccCccccccCCchhheeecc
Confidence 467788888888877654321 1124567788888887664221 111 122444444 444
Q ss_pred ecCCccEEEEE-CCceeEEEEeeeee--eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc
Q 014317 217 SCYLMEEIEIS-APSLLSFRYYGQAI--KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ 292 (427)
Q Consensus 217 ~c~~l~~~~i~-~p~L~~L~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~ 292 (427)
++. +..+... .++|+.|++.++.. ...+..++.|+.+++..+... ......+..+++|+.|.|++ +.+. ++
T Consensus 220 ~n~-l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~-N~l~~l~ 294 (597)
T 3oja_B 220 HNS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE---KIMYHPFVKMQRLERLYISN-NRLVALN 294 (597)
T ss_dssp SSC-CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---EEESGGGTTCSSCCEEECTT-SCCCEEE
T ss_pred CCc-ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC---CCCHHHhcCccCCCEEECCC-CCCCCCC
Confidence 433 2222221 24666666655532 123456777777777766532 22333456778888888887 3433 55
Q ss_pred cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317 293 FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG 365 (427)
Q Consensus 293 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 365 (427)
.....+++|+.|+|+.+.-. . ++.-+..+|+|+.|++..+.... .+.....+|+.+.+.+
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~--~---i~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLL--H---VERNQPQFDRLENLYLDHNSIVT--------LKLSTHHTLKNLTLSH 354 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCC--C---CGGGHHHHTTCSEEECCSSCCCC--------CCCCTTCCCSEEECCS
T ss_pred cccccCCCCcEEECCCCCCC--c---cCcccccCCCCCEEECCCCCCCC--------cChhhcCCCCEEEeeC
Confidence 55566788888888543222 1 22223567888888887653221 1222345677777665
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.56 E-value=2.6e-08 Score=91.45 Aligned_cols=208 Identities=12% Similarity=0.056 Sum_probs=129.5
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE--EecCccccceEEEEecCCccEEEE----ECCce
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR--VIGSSIQLKYLEIQSCYLMEEIEI----SAPSL 231 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L 231 (427)
..++|++|+|.+..+..-.. ..+..++.|+.|++.++... .+. .-..+++|++|.++++..+..+.. ..++|
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CCTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 35799999999877654211 12577999999999987532 221 112458899999998864444421 24899
Q ss_pred eEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEE
Q 014317 232 LSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLR 305 (427)
Q Consensus 232 ~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~ 305 (427)
++|++.++... ..+.+++.|+.+.+..+.... .....+..+++|+.|++++ +.+. .+ ..+..+++|++|+
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA---LPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc---cCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEE
Confidence 99998876432 235678889999988776322 2233456789999999997 4444 33 3467788899988
Q ss_pred EEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHH
Q 014317 306 LRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLF 380 (427)
Q Consensus 306 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll 380 (427)
++.+.-.... ...+..+++|+.|++..+.-....... + ....+|+.+.+.+- ........+.+++-
T Consensus 184 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~---~--~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 184 LHQNRVAHVH----PHAFRDLGRLMTLYLFANNLSALPTEA---L--APLRALQYLRLNDNPWVCDCRARPLWAWLQ 251 (285)
T ss_dssp CCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCCHHH---H--TTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCCCcccccC----HhHccCcccccEeeCCCCcCCcCCHHH---c--ccCcccCEEeccCCCccCCCCcHHHHHHHH
Confidence 8543221111 233467899999999765322211110 1 13467888888763 34444444444443
No 26
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.55 E-value=4.5e-09 Score=103.36 Aligned_cols=281 Identities=14% Similarity=0.152 Sum_probs=150.7
Q ss_pred eeEEEEEEecCCCCCccHHHHHH-HHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC
Q 014317 95 INEFKVRFDLCDFHQSDITNWVY-TVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN 173 (427)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~wl~-~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~ 173 (427)
++.+.+... .. .-..|.. ....++++.|.+..+.........+| ..+..+++|++|+|+++.+.
T Consensus 5 l~~L~Ls~~--~l---~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~----------~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 5 IQSLDIQCE--EL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS----------SALRVNPALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEESC--CC---CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH----------HHHHTCTTCCEEECTTCCCH
T ss_pred ceehhhhhc--cc---CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH----------HHHHhCCCcCEEeCCCCcCC
Confidence 566666432 11 1223444 22346899999987642211001222 22346789999999998888
Q ss_pred hhhHHHHHhcCC----ccceeeeccCCCce----e-EEEecCccccceEEEEecCCccEEEE---------ECCceeEEE
Q 014317 174 GKDIELFIQNCP----LLDRLCVDHSKTLV----R-LRVIGSSIQLKYLEIQSCYLMEEIEI---------SAPSLLSFR 235 (427)
Q Consensus 174 ~~~l~~ll~~cp----~Le~L~l~~c~~~~----~-l~i~~~~~~L~~L~l~~c~~l~~~~i---------~~p~L~~L~ 235 (427)
+..+..+...++ .|++|++.+|.... . ...-..+++|++|.++++. +....+ ..++|++|+
T Consensus 70 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEE
Confidence 777777777776 69999998886331 0 0111245788888888776 321100 124688888
Q ss_pred Eeeeeeee--------eccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee------cccccCCCC
Q 014317 236 YYGQAIKI--------NIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELP 299 (427)
Q Consensus 236 ~~~~~~~~--------~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~ 299 (427)
+.++.... .+..++.|+.+++..+.... .......+....++++.|++++| .+. ++..+..++
T Consensus 149 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCC
Confidence 87663321 23346778888887665321 01111112234568888888874 332 234445667
Q ss_pred ceeEEEEEEEccCCCChHHHH-HHHHhCCCccEEEEEeccCCCCCCcccccCCCC--ccCCccEEEEeceecCc-cHHHH
Q 014317 300 KLIDLRLRVTTPNRESLLGLT-CIMKACPFLQKLILQLNDHGRRLGKKRQQFPKY--SHQHLKVVELHGFLGRQ-FDVEL 375 (427)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~-~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~--~~~~L~~v~i~~f~g~~-~e~~~ 375 (427)
+|++|+++.+.-.......+. .+...+++|++|+++.+.-.. .+. .. ++.. ...+|+.+.+.+-.-.+ ....+
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~-~~~-~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA-KGC-GD-LCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHH-HH-HHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH-HHH-HH-HHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 888887743311110111111 122247888888886542111 000 00 1110 14578888776543221 22234
Q ss_pred HHHHHhccccccceEEEeec
Q 014317 376 AQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 376 ~~~ll~~a~~L~~l~i~~~~ 395 (427)
...+..+.+.|+.+.+..+.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSC
T ss_pred HHHhccCCccceeeEcCCCC
Confidence 44444555788888887665
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.54 E-value=8.6e-08 Score=88.86 Aligned_cols=218 Identities=15% Similarity=0.087 Sum_probs=139.2
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe---cCccccceEEEEecCCccEEEE---ECCcee
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI---GSSIQLKYLEIQSCYLMEEIEI---SAPSLL 232 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~~~i---~~p~L~ 232 (427)
.++|++|+|.++.+..- -..++..++.|+.|++.++.....-.+. ..+++|+.|.++++. +..+.. ..++|+
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence 47999999999876531 1123578999999999988643221111 145899999999876 444432 358999
Q ss_pred EEEEeeeeeee-----eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee---cccccCCCCceeEE
Q 014317 233 SFRYYGQAIKI-----NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY---MQFSLFELPKLIDL 304 (427)
Q Consensus 233 ~L~~~~~~~~~-----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~L~~L 304 (427)
+|++.+..... .+..++.|+.+.+..+.. .......+..+++|+.|.+++ ..+. .+..+..+++|++|
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC---EECSTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEE
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcC---CccchhhcccCcCCCEEECCC-CccccccchhHHhhCcCCCEE
Confidence 99998775432 356788999999987663 223344567889999999998 4443 56677888999999
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhcc-
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNA- 383 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a- 383 (427)
+++.+.-.. . ....+..+++|++|+++.+.-....... + ....+|+.+.+.+-.-..... ..+...
T Consensus 181 ~Ls~n~l~~--~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~L~~N~l~~~~~----~~~~~~~ 247 (306)
T 2z66_A 181 DLSQCQLEQ--L--SPTAFNSLSSLQVLNMSHNNFFSLDTFP---Y--KCLNSLQVLDYSLNHIMTSKK----QELQHFP 247 (306)
T ss_dssp ECTTSCCCE--E--CTTTTTTCTTCCEEECTTSCCSBCCSGG---G--TTCTTCCEEECTTSCCCBCSS----SSCCCCC
T ss_pred ECCCCCcCC--c--CHHHhcCCCCCCEEECCCCccCccChhh---c--cCcccCCEeECCCCCCcccCH----HHHHhhh
Confidence 984332111 1 1234567899999999765422211110 1 134688888887643211100 113344
Q ss_pred ccccceEEEeec
Q 014317 384 TMLEKLIIEPSR 395 (427)
Q Consensus 384 ~~L~~l~i~~~~ 395 (427)
+.|+.+.+....
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 489998885443
No 28
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.53 E-value=4.9e-09 Score=103.11 Aligned_cols=228 Identities=14% Similarity=0.099 Sum_probs=132.2
Q ss_pred eeEEEEEEecCCCCCccHHHHHHHHh--cCCceEEEEEecCCCCCccccccccccccccCCCCCC-CCCCCcEEEEeeEE
Q 014317 95 INEFKVRFDLCDFHQSDITNWVYTVL--GKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLS-GIKFLRCLHFKTVN 171 (427)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~wl~~~~--~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~-~~~~L~~L~L~~~~ 171 (427)
++.+.+... ........ .+..+. .+++++|++....... .-+..++. .+. ..++|++|+|.++.
T Consensus 30 L~~L~L~~~--~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~----~~~~~l~~------~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 30 CQVVRLDDC--GLTEARCK-DISSALRVNPALAELNLRSNELGD----VGVHCVLQ------GLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp CSEEEEESS--CCCHHHHH-HHHHHHHTCTTCCEEECTTCCCHH----HHHHHHHH------TTCSTTCCCCEEECTTSC
T ss_pred ccEEEccCC--CCCHHHHH-HHHHHHHhCCCcCEEeCCCCcCCh----HHHHHHHH------HHhhCCCceeEEEccCCC
Confidence 888888643 22211122 222222 2589999986542110 11111111 011 11279999999999
Q ss_pred eChh---hHHHHHhcCCccceeeeccCCCcee-E-EEe----cCccccceEEEEecCCccEE-----E---EECCceeEE
Q 014317 172 VNGK---DIELFIQNCPLLDRLCVDHSKTLVR-L-RVI----GSSIQLKYLEIQSCYLMEEI-----E---ISAPSLLSF 234 (427)
Q Consensus 172 ~~~~---~l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~----~~~~~L~~L~l~~c~~l~~~-----~---i~~p~L~~L 234 (427)
+.+. .+...+..+|.|++|++.++...+. . .+. ...++|++|.+++|. +... . -..|+|++|
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L 175 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKEL 175 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEE
Confidence 8874 4666678899999999998863211 0 111 123579999998885 2221 0 124899999
Q ss_pred EEeeeeeee----ec-----cCCcccceeeeeecccccc-chhhccccccCCCceEEEEeccceee------c-ccccCC
Q 014317 235 RYYGQAIKI----NI-----ENVPQLVDVSIRGSHTFRV-TYFVGPIISCFPQLKTLELDSCNEVY------M-QFSLFE 297 (427)
Q Consensus 235 ~~~~~~~~~----~~-----~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~------~-~~~~~~ 297 (427)
+++++.... .+ ...+.|+.+++..+..... ...+...+..+++|+.|+++++ .+. + +.....
T Consensus 176 ~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHP 254 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTST
T ss_pred ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcC
Confidence 988764321 01 1345888888887763321 1123444567889999999874 333 1 122235
Q ss_pred CCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 298 LPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 298 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+++|++|+++.+.-.......+...+..+++|++|+++.+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 7788888884332221122335666777888998888754
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.52 E-value=4.8e-08 Score=95.54 Aligned_cols=195 Identities=16% Similarity=0.117 Sum_probs=121.9
Q ss_pred CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----EC
Q 014317 154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SA 228 (427)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~ 228 (427)
..+..+++|+.|+|.++.+..-.. ..+..+++|+.|+|.++...... ..-..+++|+.|.++++. +..+.. ..
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 159 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRI 159 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTC
T ss_pred HHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhC
Confidence 346788999999999876543211 12567899999999887432210 011235788999888776 454432 24
Q ss_pred CceeEEEEeeee----e-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCce
Q 014317 229 PSLLSFRYYGQA----I-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKL 301 (427)
Q Consensus 229 p~L~~L~~~~~~----~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L 301 (427)
++|++|++.+.. . ...+.+++.|+.+++..+....+ . -+..+++|+.|+|++ +.+. .+..+..+++|
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI----P-NLTPLIKLDELDLSG-NHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC----C-CCTTCSSCCEEECTT-SCCCEECTTTTTTCTTC
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc----c-ccCCCcccCEEECCC-CccCccChhhhccCccC
Confidence 888888887631 1 12456788899988887764321 1 246788999999998 4444 35667788889
Q ss_pred eEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317 302 IDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG 365 (427)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 365 (427)
++|.++.+.-.... ...+..+++|+.|+|+.+......... + ....+|+.+.+.+
T Consensus 234 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 234 QKLWMIQSQIQVIE----RNAFDNLQSLVEINLAHNNLTLLPHDL---F--TPLHHLERIHLHH 288 (440)
T ss_dssp CEEECTTCCCCEEC----TTSSTTCTTCCEEECTTSCCCCCCTTT---T--SSCTTCCEEECCS
T ss_pred CEEECCCCceeEEC----hhhhcCCCCCCEEECCCCCCCccChhH---h--ccccCCCEEEcCC
Confidence 99888433211111 123467899999999765322211110 1 1246788888876
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.52 E-value=1.3e-08 Score=106.67 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=104.7
Q ss_pred CCCCCCC-CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCcc-EEE--
Q 014317 152 SGRGLSG-IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLME-EIE-- 225 (427)
Q Consensus 152 lp~~~~~-~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~-~~~-- 225 (427)
+|..+.. +++|++|+|.++.+.+. +...+..++.|+.|++.+|...+.+.. -..+++|+.|.+++|. +. .+.
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~ 362 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPES 362 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTT
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHH
Confidence 4554444 37777777777665421 111245667777777766643221111 1123556666665543 11 000
Q ss_pred E-E---------------------------CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccc
Q 014317 226 I-S---------------------------APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIIS 273 (427)
Q Consensus 226 i-~---------------------------~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 273 (427)
+ . .++|++|++.++... ..+.+++.|+.+++..+.. .......+.
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l---~~~~p~~l~ 439 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL---SGTIPSSLG 439 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE---ESCCCGGGG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc---cCcccHHHh
Confidence 0 0 234445544443221 1234445555555554431 112223334
Q ss_pred cCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC
Q 014317 274 CFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK 352 (427)
Q Consensus 274 ~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~ 352 (427)
.+++|+.|.+++|.-.. .+..+..+++|++|+++.+.-.. . ++..+..+++|+.|++..+..... .|.
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~---~p~~l~~l~~L~~L~L~~N~l~~~-------~p~ 508 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-E---IPSGLSNCTNLNWISLSNNRLTGE-------IPK 508 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-C---CCGGGGGCTTCCEEECCSSCCCSC-------CCG
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-c---CCHHHhcCCCCCEEEccCCccCCc-------CCh
Confidence 55666666666532221 44445555666666664322111 0 122345667777777655432111 111
Q ss_pred --CccCCccEEEEecee--cCccHHHHHHHHHhccccccceEEEeec
Q 014317 353 --YSHQHLKVVELHGFL--GRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 353 --~~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
....+|+.+.+.+.. |.-. .-+.+++.|+.+.+..+.
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p------~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIP------AELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECC------GGGGGCTTCCEEECCSSE
T ss_pred HHhcCCCCCEEECCCCcccCcCC------HHHcCCCCCCEEECCCCc
Confidence 134577777776542 2211 224577888888876443
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.51 E-value=1.3e-07 Score=84.26 Aligned_cols=189 Identities=16% Similarity=0.115 Sum_probs=110.4
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEE---E-ECCceeE
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIE---I-SAPSLLS 233 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~---i-~~p~L~~ 233 (427)
++|++|+|.+..+..-.- ..+..++.|+.|++.++..+..+.- -..+++|++|.+++|..+..+. + ..++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 478888888776543110 1255688888888887764433321 1245788888888755566553 1 3478888
Q ss_pred EEEeeeeeee--eccCCcccc---eeeeeec-cccccchhhccccccCCCce-EEEEeccceee-cccccCCCCceeEEE
Q 014317 234 FRYYGQAIKI--NIENVPQLV---DVSIRGS-HTFRVTYFVGPIISCFPQLK-TLELDSCNEVY-MQFSLFELPKLIDLR 305 (427)
Q Consensus 234 L~~~~~~~~~--~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~-~~~~~~~~~~L~~L~ 305 (427)
|++.++.... .+..++.|+ .+++..+ .. .......+..+++++ .|++++ +.+. ++......++|++|.
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l---~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM---TSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTC---CEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEE
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcch---hhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEE
Confidence 8887763211 145566666 7777766 42 222223356788899 999987 4444 444333336788888
Q ss_pred EEEEc-cCCCChHHHHHHHHhC-CCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317 306 LRVTT-PNRESLLGLTCIMKAC-PFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG 365 (427)
Q Consensus 306 l~~~~-~~~~~~~~l~~ll~~~-p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 365 (427)
++.+. -. ... ...+..+ ++|+.|+++.+.-. . +|...+.+|+.+.+.+
T Consensus 186 L~~n~~l~--~i~--~~~~~~l~~~L~~L~l~~N~l~-------~-l~~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 186 LNKNKYLT--VID--KDAFGGVYSGPSLLDVSQTSVT-------A-LPSKGLEHLKELIARN 235 (239)
T ss_dssp CTTCTTCC--EEC--TTTTTTCSBCCSEEECTTCCCC-------C-CCCTTCTTCSEEECTT
T ss_pred cCCCCCcc--cCC--HHHhhccccCCcEEECCCCccc-------c-CChhHhccCceeeccC
Confidence 74331 11 110 1234567 89999988654321 1 3333566777776654
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.51 E-value=4.8e-08 Score=96.28 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=18.8
Q ss_pred cCCccEEEEeceecCccHHHHHHHHHhccccccceEEEeec
Q 014317 355 HQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 355 ~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
..+|+.+.+.+..-.... . +...+.|+++.+..+.
T Consensus 308 l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp CTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSSC
T ss_pred CCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCCc
Confidence 456666666654322110 0 4566777777776543
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.50 E-value=5e-08 Score=91.04 Aligned_cols=214 Identities=14% Similarity=0.108 Sum_probs=141.6
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEE
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRY 236 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~ 236 (427)
..+++|++|+|.++.+.+-. ...+..++.|+.|++.++...+...+ ..+++|+.|.++++. +..+. ..|+|++|.+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEE-TTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhh-hhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence 35789999999998876532 23367899999999999876554443 356899999999876 55554 3489999999
Q ss_pred eeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--ccccc-CCCCceeEEEEEEEccC
Q 014317 237 YGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSL-FELPKLIDLRLRVTTPN 312 (427)
Q Consensus 237 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~ 312 (427)
.++.. ......++.|+.+++..+.... .....+..+++|+.|++++ +.+. .+..+ ..+++|++|+++.+.-.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCS---GGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCC---ccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 87743 3334557889999998877432 2333456789999999998 4444 23333 46789999998433211
Q ss_pred CCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317 313 RESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392 (427)
Q Consensus 313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 392 (427)
.... ...+++|++|+++.+.-...... + ....+|+.+.+.+-.-.. + ..-+...+.|+.+.+.
T Consensus 183 --~~~~----~~~l~~L~~L~Ls~N~l~~l~~~----~--~~l~~L~~L~L~~N~l~~--l---~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 183 --DVKG----QVVFAKLKTLDLSSNKLAFMGPE----F--QSAAGVTWISLRNNKLVL--I---EKALRFSQNLEHFDLR 245 (317)
T ss_dssp --EEEC----CCCCTTCCEEECCSSCCCEECGG----G--GGGTTCSEEECTTSCCCE--E---CTTCCCCTTCCEEECT
T ss_pred --cccc----ccccccCCEEECCCCcCCcchhh----h--cccCcccEEECcCCcccc--h---hhHhhcCCCCCEEEcc
Confidence 1111 12489999999986542221111 1 134678888877643221 0 1124677899999987
Q ss_pred eec
Q 014317 393 PSR 395 (427)
Q Consensus 393 ~~~ 395 (427)
...
T Consensus 246 ~N~ 248 (317)
T 3o53_A 246 GNG 248 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.50 E-value=5.4e-08 Score=95.56 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=121.8
Q ss_pred CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----EC
Q 014317 154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SA 228 (427)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~ 228 (427)
..+..+++|+.|+|.++.+..-.. ..+.++++|+.|+|.++...... ..-..+++|++|.++++. +..+.. ..
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 170 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRV 170 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTC
T ss_pred HHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcC
Confidence 346788899999998876543211 12567889999999887532210 111235788888888776 554432 24
Q ss_pred CceeEEEEeee-ee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCce
Q 014317 229 PSLLSFRYYGQ-AI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKL 301 (427)
Q Consensus 229 p~L~~L~~~~~-~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L 301 (427)
|+|++|++.++ .. ...+.+++.|+.+++..+....+ .-+..+++|+.|++++ +.+. .+..+..+++|
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSG-NHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTT-SCCSEECGGGGTTCTTC
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcC-CcCcccCcccccCccCC
Confidence 78888888763 11 12356788889888887764321 1246788999999997 4444 45667788899
Q ss_pred eEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317 302 IDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG 365 (427)
Q Consensus 302 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 365 (427)
++|.++.+.-.... ...+..+++|+.|+|+.+......... + ....+|+.+.+.+
T Consensus 245 ~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 245 KKLWVMNSQVSLIE----RNAFDGLASLVELNLAHNNLSSLPHDL---F--TPLRYLVELHLHH 299 (452)
T ss_dssp CEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSCCCTTS---S--TTCTTCCEEECCS
T ss_pred CEEEeCCCcCceEC----HHHhcCCCCCCEEECCCCcCCccChHH---h--ccccCCCEEEccC
Confidence 99888432211111 123567899999999765422211110 1 1246788888876
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.50 E-value=5.1e-08 Score=96.61 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=141.4
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEE
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRY 236 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~ 236 (427)
..+++|++|+|+++.+.+-. ...+..++.|+.|+|.+|...+... -..+++|+.|.++++. +..+.. .|+|+.|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence 35679999999998876421 1226789999999999987654444 3456899999999886 565543 489999999
Q ss_pred eeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--ccccc-CCCCceeEEEEEEEccC
Q 014317 237 YGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSL-FELPKLIDLRLRVTTPN 312 (427)
Q Consensus 237 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~ 312 (427)
.++.. ......++.|+.+++..+... ......+..+++|+.|++++ +.+. .+..+ ..+++|++|+|+.+.-.
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKIT---MLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCC---SGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCC---CCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 88743 233355788999999887743 23334456789999999998 4444 34444 36889999998543221
Q ss_pred CCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccceEEE
Q 014317 313 RESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKLIIE 392 (427)
Q Consensus 313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i~ 392 (427)
. .. . ...+++|+.|+++.+........ + ....+|+.+.+.+-.-.. +...+...+.|+.+.+.
T Consensus 183 ~--~~---~-~~~l~~L~~L~Ls~N~l~~~~~~----~--~~l~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 183 D--VK---G-QVVFAKLKTLDLSSNKLAFMGPE----F--QSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp E--EE---C-CCCCTTCCEEECCSSCCCEECGG----G--GGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECT
T ss_pred c--cc---c-cccCCCCCEEECCCCCCCCCCHh----H--cCCCCccEEEecCCcCcc-----cchhhccCCCCCEEEcC
Confidence 1 11 1 12589999999986543221111 1 134678888876632111 00124567889999886
Q ss_pred eec
Q 014317 393 PSR 395 (427)
Q Consensus 393 ~~~ 395 (427)
.+.
T Consensus 246 ~N~ 248 (487)
T 3oja_A 246 GNG 248 (487)
T ss_dssp TCC
T ss_pred CCC
Confidence 544
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.50 E-value=1.3e-07 Score=97.05 Aligned_cols=178 Identities=11% Similarity=0.053 Sum_probs=113.3
Q ss_pred cCCCCCCCCCCCcEEEEeeEE-eChhhHHHHH------hcCCccceeeeccCCCceeEE--EecCccccceEEEEecCCc
Q 014317 151 ESGRGLSGIKFLRCLHFKTVN-VNGKDIELFI------QNCPLLDRLCVDHSKTLVRLR--VIGSSIQLKYLEIQSCYLM 221 (427)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll------~~cp~Le~L~l~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l 221 (427)
.+|..+..+++|++|+|.++. +.+..+..-+ ..++.|+.|++.++....... .-..+++|+.|.++++. +
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-L 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-C
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-C
Confidence 357778889999999999987 7652233222 346999999999886442111 12245789999998876 3
Q ss_pred c-EEE-E-ECCceeEEEEeeeeee---eeccCCcc-cceeeeeeccccccchhhcccccc--CCCceEEEEeccceee--
Q 014317 222 E-EIE-I-SAPSLLSFRYYGQAIK---INIENVPQ-LVDVSIRGSHTFRVTYFVGPIISC--FPQLKTLELDSCNEVY-- 290 (427)
Q Consensus 222 ~-~~~-i-~~p~L~~L~~~~~~~~---~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~--~~~l~~L~l~~~~~~~-- 290 (427)
. .+. + ..++|+.|++.++... ..+..++. |+.+++..+.... +...+.. +++|+.|++++ +.+.
T Consensus 343 ~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~----lp~~~~~~~l~~L~~L~Ls~-N~l~~~ 417 (636)
T 4eco_A 343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY----IPNIFDAKSVSVMSAIDFSY-NEIGSV 417 (636)
T ss_dssp EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS----CCSCCCTTCSSCEEEEECCS-SCTTTT
T ss_pred ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc----cchhhhhcccCccCEEECcC-CcCCCc
Confidence 3 332 1 2378888888877543 23456777 9999888776322 2222333 44899999987 3433
Q ss_pred cccccC-------CCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 291 MQFSLF-------ELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 291 ~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
.+..+. .+++|++|+++.+.-. ... ..++..+++|+.|+++.+.
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp--~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQIS--KFP--KELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCC--THHHHTTCCCSEEECCSSC
T ss_pred chhhhcccccccccCCCCCEEECcCCccC--cCC--HHHHccCCCCCEEECCCCC
Confidence 344444 5668888888543222 111 2345678999999987653
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.48 E-value=4.8e-08 Score=90.82 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=104.0
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLS 233 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~ 233 (427)
+..+++|++|+|.++.+.+-.- +..++.|+.|++.++.... +..-..+++|+.|.++++. +..+. + ..++|++
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 4567888888888877654221 6778888888888775322 1112245778888887765 33221 1 2377888
Q ss_pred EEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEcc
Q 014317 234 FRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTP 311 (427)
Q Consensus 234 L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 311 (427)
|++.++.... .+..++.|+.+++..+....+ .. +..+++|+.|.+++ +.+.....+..+++|++|+++.+.-
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~----~~-l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL----TP-LANLSKLTTLKADD-NKISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC----GG-GTTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCC----hh-hcCCCCCCEEECCC-CccCcChhhcCCCCCCEEEccCCcc
Confidence 8777663321 156677888888877663321 11 56788888888887 4444222256778888888743322
Q ss_pred CCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 312 NRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
. +.. . +..+|+|+.|+++.+.
T Consensus 208 ~--~~~---~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 S--DVS---P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp C--BCG---G-GTTCTTCCEEEEEEEE
T ss_pred C--ccc---c-ccCCCCCCEEEccCCe
Confidence 1 221 1 5778888888888763
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.47 E-value=5.3e-08 Score=95.49 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=29.0
Q ss_pred cccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 272 ISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 272 ~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+..+++|+.|++++ ..+. .+..+..+++|++|+++.+.-.. . ....+..+++|++|+++.+
T Consensus 295 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 295 FSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGS--I--DSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCE--E--CGGGGTTCTTCCEEECCSS
T ss_pred cccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCCccCC--c--ChhHhcCcccCCEEECCCC
Confidence 45566666666665 2332 23344555666666653321111 0 0122345566666666543
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.47 E-value=9.2e-08 Score=94.26 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=111.2
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLS 233 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~ 233 (427)
+..+++|++|+|.++.+.+-.- +..+++|+.|++.+|..... .--..+++|++|.+++|. +..+. + ..++|++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 5678889999988887654321 67889999999988753221 112345788888888774 22221 1 1367777
Q ss_pred EEEeeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccC
Q 014317 234 FRYYGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPN 312 (427)
Q Consensus 234 L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 312 (427)
|.+.+... ...+.+++.|+.+++..+..... ..+..+++|+.|.+++| .+.....+..+++|++|+++.+.-.
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCC-cccccccccccCCCCEEECCCCCcc
Confidence 77654321 11245666777777765543221 11345566666666652 2221111334455555555322111
Q ss_pred CCChHHHHHHHHhCCCccEEEEEeccCCCCC--------------Cc-ccccCCCCccCCccEEEEeceecCccHHHHHH
Q 014317 313 RESLLGLTCIMKACPFLQKLILQLNDHGRRL--------------GK-KRQQFPKYSHQHLKVVELHGFLGRQFDVELAQ 377 (427)
Q Consensus 313 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~--------------~~-~~~~~~~~~~~~L~~v~i~~f~g~~~e~~~~~ 377 (427)
+. ..+..+++|++|+++.+.-.... ++ .....+-....+|+.+.+.+..-..-.
T Consensus 235 --~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~----- 303 (466)
T 1o6v_A 235 --DI----GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS----- 303 (466)
T ss_dssp --CC----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-----
T ss_pred --cc----hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch-----
Confidence 11 11334555555555433211100 00 000001123457777777664322111
Q ss_pred HHHhccccccceEEEeec
Q 014317 378 YLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 378 ~ll~~a~~L~~l~i~~~~ 395 (427)
. +.+.+.|+.+.+..+.
T Consensus 304 ~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 304 P-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp G-GGGCTTCSEEECCSSC
T ss_pred h-hcCCCCCCEEECcCCc
Confidence 1 5678888888887654
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.47 E-value=9.2e-09 Score=104.87 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=62.3
Q ss_pred cCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE--
Q 014317 151 ESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI-- 226 (427)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i-- 226 (427)
.+|..+..+++|++|++.++.+.... ...+..+|.|+.|++.++.....+.. -..+++|+.|.++++. +..+..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence 45677788889999999888765421 12256778888888877753322111 1234667777776655 333321
Q ss_pred ----ECCceeEEEEeeeeee----eeccCCcccceeeeeecc
Q 014317 227 ----SAPSLLSFRYYGQAIK----INIENVPQLVDVSIRGSH 260 (427)
Q Consensus 227 ----~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~ 260 (427)
..++|++|++.++... ..+..++.|+.+++..+.
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 1366666666654321 133445666666665443
No 41
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.46 E-value=2.6e-08 Score=86.14 Aligned_cols=150 Identities=16% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~ 237 (427)
.+++|+.|++.++.+.+-. -+..+++|+.|++.+|. ...+..-..+++|++|.++++. +...
T Consensus 42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~-l~~~------------- 103 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKD-VTSD------------- 103 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTT-CBGG-------------
T ss_pred hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCc-cCcc-------------
Confidence 4566666666666554311 15556667777766662 2211111123455555555443 1100
Q ss_pred eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccCCCChH
Q 014317 238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLL 317 (427)
Q Consensus 238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 317 (427)
.+..+..++.|+.+++..+.. .......+..+++|+.|.+++|..+.....+..+++|++|+++.+.-. +.
T Consensus 104 ---~~~~l~~l~~L~~L~Ls~n~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~--~~- 174 (197)
T 4ezg_A 104 ---KIPNLSGLTSLTLLDISHSAH---DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH--DY- 174 (197)
T ss_dssp ---GSCCCTTCTTCCEEECCSSBC---BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC--CC-
T ss_pred ---cChhhcCCCCCCEEEecCCcc---CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc--Ch-
Confidence 011234455555555555442 211223335667777777776442431124556667777766332111 11
Q ss_pred HHHHHHHhCCCccEEEEEec
Q 014317 318 GLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 318 ~l~~ll~~~p~L~~L~i~~~ 337 (427)
. .+..+|+|++|++.++
T Consensus 175 --~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 175 --R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp --T-TGGGCSSCCEEEECBC
T ss_pred --H-HhccCCCCCEEEeeCc
Confidence 1 3456777777777643
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.46 E-value=3.5e-08 Score=99.72 Aligned_cols=170 Identities=15% Similarity=0.083 Sum_probs=90.1
Q ss_pred ccccceEEEEecCCccEEEE------ECCceeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCC
Q 014317 207 SIQLKYLEIQSCYLMEEIEI------SAPSLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQ 277 (427)
Q Consensus 207 ~~~L~~L~l~~c~~l~~~~i------~~p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 277 (427)
+++|+.|.++++. +..+.. ..++|++|++.++.. +..+..++.|+.+++..+..... .....+..+++
T Consensus 346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~ 422 (570)
T 2z63_A 346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRN 422 (570)
T ss_dssp CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC--TTSCTTTTCTT
T ss_pred CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc--cchhhhhcCCC
Confidence 3556666665554 332210 136666666655421 22245666677766665442110 01123456777
Q ss_pred ceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC--Cc
Q 014317 278 LKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK--YS 354 (427)
Q Consensus 278 l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~ 354 (427)
|+.|++++|.-.. .+..+..+++|++|+++.+.-.. ..++..+..+++|+.|+++.+.-.. . .|. ..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~---~----~~~~~~~ 492 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQ---L----SPTAFNS 492 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCE---E----CTTTTTT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc---ccchhhhhcccCCCEEECCCCcccc---C----Chhhhhc
Confidence 7777777643222 44455667777777773321110 0112334677888888886543211 1 111 13
Q ss_pred cCCccEEEEecee--cCccHHHHHHHHHhccccccceEEEeec
Q 014317 355 HQHLKVVELHGFL--GRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 355 ~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
..+|+.+.+.+.. +... ..+.+.+.|+.+.+....
T Consensus 493 l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPD------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEeCCCCcCCCCCH------HHhhcccCCcEEEecCCc
Confidence 4688888887643 2211 235678999999986544
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.45 E-value=3.7e-08 Score=100.39 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----ECC
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SAP 229 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~p 229 (427)
.+..+++|++|+|.++.+.. +..-+..++.|+.|++.++...... .....+++|+.|.++++.....+.. ..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 36677788888887766542 1112456778888888777533210 1112346777887777652212211 237
Q ss_pred ceeEEEEeeeee------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317 230 SLLSFRYYGQAI------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS 285 (427)
Q Consensus 230 ~L~~L~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 285 (427)
+|++|++.++.. +..+..++.|+.+++..+.... .....+..+++|+.|++++
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE---ECTTTTTTCTTCSEEECTT
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc---CCHHHhcCCccCCeEECCC
Confidence 777777776532 1235667777777776654211 1122234455555555554
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.45 E-value=8.8e-08 Score=97.49 Aligned_cols=215 Identities=15% Similarity=0.150 Sum_probs=123.7
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEE-CCcee
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEIS-APSLL 232 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~ 232 (427)
.+..+++|+.|+|.++.+..- ...+++.++.|+.|++.++...... ..-..+++|+.|.++++. +..+.+. .|+|+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~ 195 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLF 195 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCS
T ss_pred HHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhh
Confidence 467899999999999876531 1123578999999999988643211 111245889999998775 3333222 25555
Q ss_pred EEEEeeeeee-------------------e-eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--
Q 014317 233 SFRYYGQAIK-------------------I-NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-- 290 (427)
Q Consensus 233 ~L~~~~~~~~-------------------~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-- 290 (427)
.|++.++... . .....+.|+.+.+..+.... ...+..+++|+.|++++ +.+.
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-----~~~l~~l~~L~~L~Ls~-N~l~~~ 269 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSY-NELEKI 269 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-----CGGGGGCTTCSEEECCS-SCCCEE
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-----ChhhccCCCCCEEECCC-CccCCC
Confidence 5555443211 1 11112356666665554221 13356788888888887 3443
Q ss_pred cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecCc
Q 014317 291 MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGRQ 370 (427)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~~ 370 (427)
.+..+..+++|+.|.|+.+.-. ++......+|+|+.|+++.+.....+.. + ....+|+.+.+.+..-..
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~i~~~----~--~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLV-----ALNLYGQPIPTLKVLDLSHNHLLHVERN----Q--PQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCC-----EEECSSSCCTTCCEEECCSSCCCCCGGG----H--HHHTTCSEEECCSSCCCC
T ss_pred CHHHhcCccCCCEEECCCCCCC-----CCCcccccCCCCcEEECCCCCCCccCcc----c--ccCCCCCEEECCCCCCCC
Confidence 4556677788888887432111 1122234578888888876532211111 0 134577888776643211
Q ss_pred cHHHHHHHHHhccccccceEEEeec
Q 014317 371 FDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 371 ~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
- -+...+.|+.+.+....
T Consensus 339 ~-------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 L-------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp C-------CCCTTCCCSEEECCSSC
T ss_pred c-------ChhhcCCCCEEEeeCCC
Confidence 1 14566788888875443
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.45 E-value=2.1e-07 Score=91.88 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=94.8
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE-EecCccccceEEEEecCCccEEEEE---CCc
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR-VIGSSIQLKYLEIQSCYLMEEIEIS---APS 230 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~~c~~l~~~~i~---~p~ 230 (427)
.+..+++|++|+|.++.+..-. ...+..++.|+.|++.++....... .-..+++|+.|.+++|..+..+... .++
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 4556666666666666554321 1235566777777776654322100 0113467777777776654444221 246
Q ss_pred eeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEE
Q 014317 231 LLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDL 304 (427)
Q Consensus 231 L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L 304 (427)
|++|++.++... ..+..++.|+.+++..+... ......+..+++|+.|.+++ +.+. .+..+..+++|+.|
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS---TIEGSMLHELLRLQEIQLVG-GQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC---EECTTSCTTCTTCCEEECCS-SCCSEECTTTBTTCTTCCEE
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCC---ccChhhccccccCCEEECCC-CccceECHHHhcCcccCCEE
Confidence 777777665322 12456677777777766522 22223346677777777776 3333 34455667777777
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+|+.+.-.... ...+..+++|++|++..+
T Consensus 302 ~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 302 NVSGNQLTTLE----ESVFHSVGNLETLILDSN 330 (477)
T ss_dssp ECCSSCCSCCC----GGGBSCGGGCCEEECCSS
T ss_pred ECCCCcCceeC----HhHcCCCcccCEEEccCC
Confidence 77433211111 123455677777777654
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=1.3e-08 Score=107.26 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=88.8
Q ss_pred CCCCCCCCCCCcEEEEeeEEeChh----------------hHHHHHh--cCCccceeeeccCCCceeEE-EecCccccce
Q 014317 152 SGRGLSGIKFLRCLHFKTVNVNGK----------------DIELFIQ--NCPLLDRLCVDHSKTLVRLR-VIGSSIQLKY 212 (427)
Q Consensus 152 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~ 212 (427)
+|..+..+++|+.|+|+++.+.++ .+..-+. .+++|+.|+|.+|...+.+. .-..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 566677788888888888777652 1222233 67888888888775433221 1123467777
Q ss_pred EEEEecCCccE--EE----------EECCceeEEEEeeeee---ee--eccCCcccceeeeeeccccccchhhccccccC
Q 014317 213 LEIQSCYLMEE--IE----------ISAPSLLSFRYYGQAI---KI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCF 275 (427)
Q Consensus 213 L~l~~c~~l~~--~~----------i~~p~L~~L~~~~~~~---~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 275 (427)
|.++++..+.. +. ...|+|+.|++.++.. +. .+.+++.|+.+.+..+.. . .+. .+..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l---~-~lp-~~~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV---R-HLE-AFGTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC---C-BCC-CCCTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc---c-cch-hhcCC
Confidence 77776652221 10 1125777777776532 33 455677777777766552 2 222 34667
Q ss_pred CCceEEEEeccceee-cccccCCCCc-eeEEEEEE
Q 014317 276 PQLKTLELDSCNEVY-MQFSLFELPK-LIDLRLRV 308 (427)
Q Consensus 276 ~~l~~L~l~~~~~~~-~~~~~~~~~~-L~~L~l~~ 308 (427)
++|+.|.+++ +.+. ++..+..+++ |++|.|+.
T Consensus 595 ~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 595 VKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp SEESEEECCS-SCCSCCCTTSCEECTTCCEEECCS
T ss_pred CcceEEECcC-CccccchHHHhhccccCCEEECcC
Confidence 7777777776 3333 5555556666 77777643
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.44 E-value=1.5e-08 Score=99.47 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=62.9
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCI 322 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 322 (427)
+..++.|+.+++..+.. .......+..+++|+.|+++++ .+. .+..+..+++|++|+++.+.-.. . ....
T Consensus 295 ~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~~~ 366 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEI---NKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA--L--GDQS 366 (455)
T ss_dssp TTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCE--E--CTTT
T ss_pred cccCCCCCEEECCCCcc---cccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccc--c--Chhh
Confidence 34556666666655542 2222233456777888888763 333 34455667777777774332111 0 0123
Q ss_pred HHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHH
Q 014317 323 MKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLF 380 (427)
Q Consensus 323 l~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll 380 (427)
+..+++|+.|++..+.-....... + ....+|+.+.+.+- .+....+.+....+
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGI---F--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTT---T--TTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred ccccccccEEECCCCccccCCHhH---h--ccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 456778888887654322111100 0 12456777777653 34444444443333
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.42 E-value=7e-08 Score=92.74 Aligned_cols=215 Identities=15% Similarity=0.150 Sum_probs=118.2
Q ss_pred CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEE-CCce
Q 014317 154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEIS-APSL 231 (427)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L 231 (427)
..+..+++|++|+|.++.+..- ...++..++.|+.|++.++...... ..-..+++|+.|.++++. +..+.+. .|+|
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L 188 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSL 188 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTC
T ss_pred HHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccccccccc
Confidence 3467899999999999876631 1123577999999999988643211 111245789999998876 4443332 3777
Q ss_pred eEEEEeeeeeee--------------------eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-
Q 014317 232 LSFRYYGQAIKI--------------------NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY- 290 (427)
Q Consensus 232 ~~L~~~~~~~~~--------------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~- 290 (427)
+.|.+.+..... .....+.|+.+++..+.... ...+..+++|+.|++++ ..+.
T Consensus 189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~Ls~-n~l~~ 262 (390)
T 3o6n_A 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSY-NELEK 262 (390)
T ss_dssp SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-----CGGGGGCTTCSEEECCS-SCCCE
T ss_pred ceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-----cHHHcCCCCccEEECCC-CcCCC
Confidence 777766542211 01112344555544443211 12345677777777776 3333
Q ss_pred -cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEeceecC
Q 014317 291 -MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFLGR 369 (427)
Q Consensus 291 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~g~ 369 (427)
.+..+..+++|++|.++.+.-. . +......+|+|++|+++.+.-...+.. . ....+|+.+.+.+-.-.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~--~---~~~~~~~l~~L~~L~L~~n~l~~~~~~----~--~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLV--A---LNLYGQPIPTLKVLDLSHNHLLHVERN----Q--PQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCC--E---EECSSSCCTTCCEEECCSSCCCCCGGG----H--HHHTTCSEEECCSSCCC
T ss_pred cChhHccccccCCEEECCCCcCc--c---cCcccCCCCCCCEEECCCCcceecCcc----c--cccCcCCEEECCCCccc
Confidence 3455566777777777432111 1 111224567777777765432111000 0 12356666666653321
Q ss_pred ccHHHHHHHHHhccccccceEEEee
Q 014317 370 QFDVELAQYLFQNATMLEKLIIEPS 394 (427)
Q Consensus 370 ~~e~~~~~~ll~~a~~L~~l~i~~~ 394 (427)
.-. +...+.|+.+.+...
T Consensus 332 ~~~-------~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 332 TLK-------LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCC-------CCTTCCCSEEECCSS
T ss_pred eeC-------chhhccCCEEEcCCC
Confidence 111 445667777776543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.41 E-value=4.7e-08 Score=91.08 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=18.4
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS 195 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 195 (427)
+..+++|++|+|.++.+... +...+..++.|+.|++.++
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCC
Confidence 44555555555555544311 0011344555555555554
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.41 E-value=2.8e-08 Score=101.25 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=117.2
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE-ECCceeEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI-SAPSLLSF 234 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i-~~p~L~~L 234 (427)
+..+++|+.|++.++.+..-. -+..++.|++|++.+|.......+ .+++|+.|.++++.....+.+ ..|+|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC--CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 677899999999988765422 366789999999999875221122 568999999999865554433 35899999
Q ss_pred EEeeeee------eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cc-cccCCCCceeEEE
Q 014317 235 RYYGQAI------KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQ-FSLFELPKLIDLR 305 (427)
Q Consensus 235 ~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~-~~~~~~~~L~~L~ 305 (427)
++.++.. +..+..++.|+.+++..+.... +...+..+++|+.|.+++ ..+. .+ ..+..+++|++|+
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII----MSANFMGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE----ECCCCTTCTTCCEEECTT-SEEESTTTTTTTTTCTTCCEEE
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc----chhhccCCCCCCeeECCC-CccCCccChhhhhccccCCEEE
Confidence 9987643 2345678999999998776322 224457889999999998 4444 23 4567888999998
Q ss_pred EEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 306 LRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 306 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
++.+.-.. . ....+..+++|++|++..+
T Consensus 431 l~~n~l~~-~---~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 431 ISYTNTKI-D---FDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp CTTSCCEE-C---CTTTTTTCTTCCEEECTTC
T ss_pred CcCCCCCc-c---chhhhcCCCCCCEEECCCC
Confidence 84322111 0 1233567888999888655
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.41 E-value=4.1e-08 Score=96.43 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=81.1
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEEE----C
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEIS----A 228 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i~----~ 228 (427)
.+.++++|++|+|.++.+..-. ...+..+++|+.|++.++.... +.- -..+++|+.|.+++|..+..+... .
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 3456666777766665543210 1123456666666666654221 110 113456666666665544444321 2
Q ss_pred CceeEEEEeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEE
Q 014317 229 PSLLSFRYYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDL 304 (427)
Q Consensus 229 p~L~~L~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L 304 (427)
++|++|++.++... -.+..++.|+.++++.+... ......+..+++|+.|.+++ +.+. .+..+..+++|++|
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP---EIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS---EECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcccccccccccccccEEECcCCcCc---ccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEE
Confidence 56666666554221 12344555666666554421 12222334555666666655 2332 23334455556665
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+|+.+.-.... ...+..+++|+.|+|+.+
T Consensus 272 ~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 272 NLAHNNLSSLP----HDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECCSSCCSCCC----TTSSTTCTTCCEEECCSS
T ss_pred ECCCCcCCccC----hHHhccccCCCEEEccCC
Confidence 55332111100 112344556666665543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.40 E-value=4.4e-08 Score=95.85 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=58.9
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEEE----CCc
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEIS----APS 230 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i~----~p~ 230 (427)
.++++|++|+|.++.+..-. ...+..+++|+.|++.++.... +.- -..+++|+.|.++++..+..+... .++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred cCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 34555555555554433210 0113345555555555443211 100 012345555555554433333211 245
Q ss_pred eeEEEEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEE
Q 014317 231 LLSFRYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRL 306 (427)
Q Consensus 231 L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l 306 (427)
|++|++.++.... .+..++.|+.+++..+.. .......+..+++|+.|.+++ +.+. .+..+..+++|++|+|
T Consensus 187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L 262 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL---SAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINL 262 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC---CEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEEC
T ss_pred cCeecCCCCcCccccccCCCcccCEEECCCCcc---CccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEEC
Confidence 5555554442110 123444555555544432 111122234455555555554 2222 2233344455555554
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.40 E-value=6.7e-08 Score=90.03 Aligned_cols=214 Identities=15% Similarity=0.131 Sum_probs=122.4
Q ss_pred CCCCCCCCCCcEEEEee-EEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCcc-EEE--E-
Q 014317 153 GRGLSGIKFLRCLHFKT-VNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLME-EIE--I- 226 (427)
Q Consensus 153 p~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~-~~~--i- 226 (427)
|..+..+++|++|+|.+ ..+.+. +..-+..++.|++|++.++...+.+ ..-..+++|++|.++++. +. .+. +
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 146 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSIS 146 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGG
T ss_pred ChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHh
Confidence 33467888999999984 333221 1112567899999999887644221 111245788888887764 22 111 1
Q ss_pred ECCceeEEEEeeeee----eeeccCCc-ccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCC
Q 014317 227 SAPSLLSFRYYGQAI----KINIENVP-QLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELP 299 (427)
Q Consensus 227 ~~p~L~~L~~~~~~~----~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~ 299 (427)
..++|++|++.++.. +..+..++ .|+.+++..+... ......+..+. |+.|++++ +.+. .+..+..++
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l~-L~~L~Ls~-N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLN-LAFVDLSR-NMLEGDASVLFGSDK 221 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGCC-CSEEECCS-SEEEECCGGGCCTTS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCCc-ccEEECcC-CcccCcCCHHHhcCC
Confidence 247888888877643 23455666 7888888776532 12222334444 88888887 4444 555667788
Q ss_pred ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCC--CccCCccEEEEece--ecCccHHHH
Q 014317 300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPK--YSHQHLKVVELHGF--LGRQFDVEL 375 (427)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~f--~g~~~e~~~ 375 (427)
+|+.|+++.+.-.. ... .+..+++|++|+++.+.-.. . .|. ....+|+.+.+.+- .|.-.+
T Consensus 222 ~L~~L~L~~N~l~~-~~~----~~~~l~~L~~L~Ls~N~l~~---~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~--- 286 (313)
T 1ogq_A 222 NTQKIHLAKNSLAF-DLG----KVGLSKNLNGLDLRNNRIYG---T----LPQGLTQLKFLHSLNVSFNNLCGEIPQ--- 286 (313)
T ss_dssp CCSEEECCSSEECC-BGG----GCCCCTTCCEEECCSSCCEE---C----CCGGGGGCTTCCEEECCSSEEEEECCC---
T ss_pred CCCEEECCCCceee-ecC----cccccCCCCEEECcCCcccC---c----CChHHhcCcCCCEEECcCCcccccCCC---
Confidence 88888875432221 111 14567888888887553211 1 111 12456777777653 222111
Q ss_pred HHHHHhccccccceEEE
Q 014317 376 AQYLFQNATMLEKLIIE 392 (427)
Q Consensus 376 ~~~ll~~a~~L~~l~i~ 392 (427)
. .+.+.|+.+.+.
T Consensus 287 ---~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 287 ---G-GNLQRFDVSAYA 299 (313)
T ss_dssp ---S-TTGGGSCGGGTC
T ss_pred ---C-ccccccChHHhc
Confidence 1 345666666554
No 54
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.40 E-value=1.3e-08 Score=97.72 Aligned_cols=181 Identities=14% Similarity=0.174 Sum_probs=118.7
Q ss_pred CCCCCCcEEEEeeEEeChh---hHHHHHhcCCccceeeeccCCCcee--EEEec---Cc---------cccceEEEEecC
Q 014317 157 SGIKFLRCLHFKTVNVNGK---DIELFIQNCPLLDRLCVDHSKTLVR--LRVIG---SS---------IQLKYLEIQSCY 219 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~c~~~~~--l~i~~---~~---------~~L~~L~l~~c~ 219 (427)
..+++|++|+|+++.+.+. .+...+..||.|+.|+|.+|..... ..+.. .+ ++|++|.+++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 5778999999999888764 3555678899999999988864210 01111 11 689999998876
Q ss_pred Cc-cEEE------EECCceeEEEEeeeeee------e---eccCCcccceeeeeecccccc-chhhccccccCCCceEEE
Q 014317 220 LM-EEIE------ISAPSLLSFRYYGQAIK------I---NIENVPQLVDVSIRGSHTFRV-TYFVGPIISCFPQLKTLE 282 (427)
Q Consensus 220 ~l-~~~~------i~~p~L~~L~~~~~~~~------~---~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~ 282 (427)
-- ..+. -..++|++|.+.++.+. . .+..++.|+.+.+..+..... ...+...+..+++|+.|.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 21 1111 13579999998877443 1 456788999999988773210 123444567899999999
Q ss_pred Eeccceee------ccccc--CCCCceeEEEEEEEccCCCChHHHHHHH-HhCCCccEEEEEecc
Q 014317 283 LDSCNEVY------MQFSL--FELPKLIDLRLRVTTPNRESLLGLTCIM-KACPFLQKLILQLND 338 (427)
Q Consensus 283 l~~~~~~~------~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~ll-~~~p~L~~L~i~~~~ 338 (427)
|++| .+. ++..+ ..+++|++|+|+.+.-.......+...+ .++|+|+.|+++++.
T Consensus 251 L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 9984 343 23444 3388999999854322221222355555 668999999998654
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.37 E-value=2.7e-06 Score=90.08 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=52.2
Q ss_pred CceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCcee
Q 014317 229 PSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~ 302 (427)
++|+.|+++++.. +..+..++.|+.+.+..+... ......+..+++|+.|++++ +.+. .+..+..+++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN---KIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC---EECTTTTTTCSSCCEEEEES-CCCSCCCSCSCSSCTTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC---CCChHHhcCCCCCCEEECCC-CCCCccCHHHhcCCCCCC
Confidence 5677777665432 223456677777777766532 22223345666777777766 3332 234445556666
Q ss_pred EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
.|+++.+.-.... ...+..+++|+.|+++.+
T Consensus 342 ~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 342 YIDLQKNHIAIIQ----DQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEECCSCCCCCCC----SSCSCSCCCCCEEEEETC
T ss_pred EEECCCCCCCccC----hhhhcCCCCCCEEECCCC
Confidence 6666432211100 011245566666666544
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.35 E-value=4.4e-08 Score=91.20 Aligned_cols=88 Identities=16% Similarity=0.040 Sum_probs=52.3
Q ss_pred hcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChh--hHHHHHh-cCCccceeeeccCC
Q 014317 120 LGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGK--DIELFIQ-NCPLLDRLCVDHSK 196 (427)
Q Consensus 120 ~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~~c~ 196 (427)
.-.++++|++...... ..+|..+| +..+++|++|+|.++.+.+. .+..+.. ..+.|++|++.++.
T Consensus 93 ~l~~L~~L~L~~n~l~----~~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVT----GTAPPPLL--------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TTSCCCEEEEEEEBCB----SCCCCCSS--------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred CcCCccEEEccCCccc----chhHHHHH--------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence 4468899999876321 12232211 16788999999999887653 3333221 13889999998875
Q ss_pred CceeE-EEecCccccceEEEEecC
Q 014317 197 TLVRL-RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 197 ~~~~l-~i~~~~~~L~~L~l~~c~ 219 (427)
..... ..-..+++|+.|.++++.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCT
T ss_pred CccchHHHhccCCCCCEEECCCCC
Confidence 43211 111134677777777665
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.34 E-value=4.1e-08 Score=92.23 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=47.5
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCc
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPS 230 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~ 230 (427)
.+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.... +... ..++|++|.++++. +..+.. ..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~-l~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLVE-IPPN-LPSSLVELRIHDNR-IRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCCS-CCSS-CCTTCCEEECCSSC-CCCCCSGGGSSCSS
T ss_pred HhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCCc-cCcc-ccccCCEEECCCCc-cCccCHhHhCCCcc
Confidence 4567788888888877654321 1125667888888887764321 1111 11577777777664 333221 2367
Q ss_pred eeEEEEeeee
Q 014317 231 LLSFRYYGQA 240 (427)
Q Consensus 231 L~~L~~~~~~ 240 (427)
|+.|++.+..
T Consensus 149 L~~L~l~~n~ 158 (332)
T 2ft3_A 149 MNCIEMGGNP 158 (332)
T ss_dssp CCEEECCSCC
T ss_pred CCEEECCCCc
Confidence 7777776553
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.33 E-value=2e-07 Score=86.55 Aligned_cols=185 Identities=16% Similarity=0.162 Sum_probs=120.4
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEE
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSF 234 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L 234 (427)
..+++|++|++.++.+..- . -+..++.|+.|++.+|....... -..+++|+.|.++++. +..+. + ..++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence 3578999999998876542 1 16779999999999885432111 3356899999999876 44332 1 14788999
Q ss_pred EEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEcc
Q 014317 235 RYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTP 311 (427)
Q Consensus 235 ~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 311 (427)
+++++.... .+..++.|+.+++..+....+. . +..+++|+.|.++++ .+. .+. +..+++|++|+++.+.-
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----P-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG----G-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCc----c-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCcc
Confidence 888764321 2567888888888877643311 1 567888999999873 444 333 67778888888854322
Q ss_pred CCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece
Q 014317 312 NRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF 366 (427)
Q Consensus 312 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f 366 (427)
. +... +..+++|+.|+++.+.-.... +-....+|+.+.+.+-
T Consensus 186 ~--~~~~----l~~l~~L~~L~L~~N~l~~~~-------~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 186 S--DISP----LASLPNLIEVHLKNNQISDVS-------PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp C--CCGG----GGGCTTCCEEECTTSCCCBCG-------GGTTCTTCCEEEEEEE
T ss_pred C--cChh----hcCCCCCCEEEccCCccCccc-------cccCCCCCCEEEccCC
Confidence 2 2211 578889999988765322111 1123457777777664
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.32 E-value=8.4e-07 Score=89.11 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=118.1
Q ss_pred CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce--eEEEecCccccceEEEEecCCccEEEE----E
Q 014317 154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV--RLRVIGSSIQLKYLEIQSCYLMEEIEI----S 227 (427)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~--~l~i~~~~~~L~~L~l~~c~~l~~~~i----~ 227 (427)
..+..+++|++|+|+++.+.+-. ...++.+++|+.|++.++.... ....-..+++|+.|.++++..+..+.. .
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 34678899999999998876532 2236789999999999886432 112223468999999999875555431 1
Q ss_pred CCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c---c-cccCCC
Q 014317 228 APSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M---Q-FSLFEL 298 (427)
Q Consensus 228 ~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~---~-~~~~~~ 298 (427)
.++|++|++.++.. +..+..++.|+.+++..+.... ....+...+++++.|.+++ ..+. . + .....+
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF---LLEIFADILSSVRYLELRD-TNLARFQFSPLPVDEVS 222 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEES-CBCTTCCCCCCSSCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccc---cchhhHhhcccccEEEccC-Cccccccccccchhhhh
Confidence 48899999987643 2345667888888887766322 2223345689999999997 3333 1 1 122456
Q ss_pred CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 299 PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 299 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
++|++|.+..+.-.......+...+..+++|+.|++..+.
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 7888888854422222333445556678888888887653
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.30 E-value=4.1e-06 Score=83.49 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=42.1
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce-eE-EEecCccccceEEEEecCCccEEEE-ECCce-
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV-RL-RVIGSSIQLKYLEIQSCYLMEEIEI-SAPSL- 231 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-~l-~i~~~~~~L~~L~l~~c~~l~~~~i-~~p~L- 231 (427)
+..+++|++|+|+++.+.. +... .++.|++|++.++.... .+ ..-..+++|++|.++++. +....+ ..++|
T Consensus 65 ~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~ 139 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLN 139 (520)
T ss_dssp GTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSC
T ss_pred hhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccce
Confidence 4566777777777765542 1110 56777777777765322 11 111234677777777665 221111 12455
Q ss_pred -eEEEEeee
Q 014317 232 -LSFRYYGQ 239 (427)
Q Consensus 232 -~~L~~~~~ 239 (427)
+.|++.++
T Consensus 140 L~~L~l~~n 148 (520)
T 2z7x_B 140 ISKVLLVLG 148 (520)
T ss_dssp EEEEEEEEC
T ss_pred eeEEEeecc
Confidence 77777654
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.30 E-value=1e-07 Score=86.80 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=38.7
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE-EecCccccceEEEEecC
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR-VIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~-i~~~~~~L~~L~l~~c~ 219 (427)
+..+++|+.|+|.++.+.+-. -+..++.|+.|++.+|....... .-..+++|+.|.++++.
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 457788888888887765421 35678888888888775322110 01234667777776654
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.29 E-value=2.7e-07 Score=90.59 Aligned_cols=218 Identities=16% Similarity=0.118 Sum_probs=139.8
Q ss_pred cCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCcee
Q 014317 121 GKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR 200 (427)
Q Consensus 121 ~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~ 200 (427)
-..++.|++...... . +| .+..+++|++|+|.++.+.+-. ++.++.|+.|++.++.-.+
T Consensus 41 l~~L~~L~Ls~n~l~-----~----------~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~- 99 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-----D----------MT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTN- 99 (457)
T ss_dssp HTTCCEEECCSSCCC-----C----------CT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC-
T ss_pred cCCCCEEEccCCCcc-----c----------Ch-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCce-
Confidence 357777777654211 1 22 3568899999999998876632 6778999999998886333
Q ss_pred EEEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeeee-eeeccCCcccceeeeeeccccccchhhccccccCCCc
Q 014317 201 LRVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQAI-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQL 278 (427)
Q Consensus 201 l~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 278 (427)
+.+ ..+++|+.|.++++. +..+.+. .++|++|++.++.. ...+..++.|+.+++..+.... . + -+..+++|
T Consensus 100 ~~~-~~l~~L~~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~--~-~--~~~~l~~L 172 (457)
T 3bz5_A 100 LDV-TPLTKLTYLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKIT--K-L--DVTPQTQL 172 (457)
T ss_dssp CCC-TTCTTCCEEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCC--C-C--CCTTCTTC
T ss_pred eec-CCCCcCCEEECCCCc-CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccc--c-c--ccccCCcC
Confidence 233 346889999998875 5544443 38899998877643 2346778888888887764211 1 1 14678899
Q ss_pred eEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCC
Q 014317 279 KTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQH 357 (427)
Q Consensus 279 ~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 357 (427)
+.|++++ ..+. ++ +..+++|+.|.++.+.-.. . -+..+++|+.|+++.+.-.. +|-....+
T Consensus 173 ~~L~ls~-n~l~~l~--l~~l~~L~~L~l~~N~l~~--~-----~l~~l~~L~~L~Ls~N~l~~--------ip~~~l~~ 234 (457)
T 3bz5_A 173 TTLDCSF-NKITELD--VSQNKLLNRLNCDTNNITK--L-----DLNQNIQLTFLDCSSNKLTE--------IDVTPLTQ 234 (457)
T ss_dssp CEEECCS-SCCCCCC--CTTCTTCCEEECCSSCCSC--C-----CCTTCTTCSEEECCSSCCSC--------CCCTTCTT
T ss_pred CEEECCC-Cccceec--cccCCCCCEEECcCCcCCe--e-----ccccCCCCCEEECcCCcccc--------cCccccCC
Confidence 9999987 4444 33 5677889998885432222 1 15678999999997654222 22224567
Q ss_pred ccEEEEeceecCccHHHHHHHHHhccccccceEE
Q 014317 358 LKVVELHGFLGRQFDVELAQYLFQNATMLEKLII 391 (427)
Q Consensus 358 L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l~i 391 (427)
|+.+.+.+-.-... -+...+.|+.+.+
T Consensus 235 L~~L~l~~N~l~~~-------~~~~l~~L~~L~l 261 (457)
T 3bz5_A 235 LTYFDCSVNPLTEL-------DVSTLSKLTTLHC 261 (457)
T ss_dssp CSEEECCSSCCSCC-------CCTTCTTCCEEEC
T ss_pred CCEEEeeCCcCCCc-------CHHHCCCCCEEec
Confidence 88888776432111 1345566665544
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.28 E-value=7e-08 Score=87.97 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=39.9
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 219 (427)
..+++|+.|.+.++.+..-. -+..+|.|+.|++.++...+ +..-..+++|++|.++++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC
T ss_pred ccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc
Confidence 45788999999887765421 16679999999999886332 1111245677777777664
No 64
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.28 E-value=2.7e-07 Score=96.71 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEE----ECCcee
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEI----SAPSLL 232 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~ 232 (427)
.+++|++|+|.++.+.+..-..+...|+.|+.|++.+|...+.+ ..-..+++|++|.++++.-...+.. ..++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 78999999999988764322222344799999999988533211 1112458899999988762223321 248999
Q ss_pred EEEEeeeeee----eeccCCc-ccceeeeeecc
Q 014317 233 SFRYYGQAIK----INIENVP-QLVDVSIRGSH 260 (427)
Q Consensus 233 ~L~~~~~~~~----~~~~~~~-~L~~l~l~~~~ 260 (427)
+|++.++... ..+.+++ .|+.+++..+.
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 9999877543 2233344 67777776654
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.27 E-value=7.4e-08 Score=89.54 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=65.7
Q ss_pred eeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCC--CCCCCCcEEEEeeEEe
Q 014317 95 INEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGL--SGIKFLRCLHFKTVNV 172 (427)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~ 172 (427)
++.+.+.- .......+...........+++|.+...... ...| ..+ ..+++|++|+|.++.+
T Consensus 66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~----------~~~~~~~~~~L~~L~Ls~n~i 129 (310)
T 4glp_A 66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKIT----GTMP----------PLPLEATGLALSSLRLRNVSW 129 (310)
T ss_dssp CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCB----SCCC----------CCSSSCCCBCCSSCEEESCCC
T ss_pred eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEec----cchh----------hhhhhccCCCCCEEEeecccc
Confidence 56665532 1222234555555555567999999876321 1122 223 6789999999999988
Q ss_pred Chh--hHH-HHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317 173 NGK--DIE-LFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 173 ~~~--~l~-~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~ 219 (427)
... .+. .-+..+|.|+.|++.++...... ..-..+++|++|.++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 130 ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 752 122 22347999999999988643211 111134677777777665
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.26 E-value=1.1e-07 Score=89.19 Aligned_cols=190 Identities=18% Similarity=0.206 Sum_probs=98.4
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCc
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPS 230 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~ 230 (427)
.+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.... +... ..++|++|.++++. +..+.. ..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~-l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKE-LPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQ 146 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCSB-CCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred hhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCCc-cChh-hcccccEEECCCCc-ccccCHhHhcCCcc
Confidence 3566777777777766554211 1114567777777777664221 1101 11567777776654 332211 1366
Q ss_pred eeEEEEeeeeee------eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCcee
Q 014317 231 LLSFRYYGQAIK------INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLI 302 (427)
Q Consensus 231 L~~L~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~ 302 (427)
|+.|++.++... ..+.+++.|+.+.+..+....+. . ...++|+.|++++ ..+. .+..+..+++|+
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~---~---~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP---Q---GLPPSLTELHLDG-NKITKVDAASLKGLNNLA 219 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC---S---SCCTTCSEEECTT-SCCCEECTGGGTTCTTCC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC---c---cccccCCEEECCC-CcCCccCHHHhcCCCCCC
Confidence 777776655321 23445666777766655422111 1 1226777777776 3333 344556677777
Q ss_pred EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec
Q 014317 303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG 365 (427)
Q Consensus 303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~ 365 (427)
+|+++.+.-.... ...+..+++|+.|+++.+.-...... + ....+|+.+.+.+
T Consensus 220 ~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~lp~~----l--~~l~~L~~L~l~~ 272 (330)
T 1xku_A 220 KLGLSFNSISAVD----NGSLANTPHLRELHLNNNKLVKVPGG----L--ADHKYIQVVYLHN 272 (330)
T ss_dssp EEECCSSCCCEEC----TTTGGGSTTCCEEECCSSCCSSCCTT----T--TTCSSCCEEECCS
T ss_pred EEECCCCcCceeC----hhhccCCCCCCEEECCCCcCccCChh----h--ccCCCcCEEECCC
Confidence 7777433211101 11345677888888765532211110 1 1245677777764
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=5.7e-08 Score=102.35 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=18.9
Q ss_pred CCCCCcEEEEeeEEeChhhHHH--HHhcCCccceeeeccCC
Q 014317 158 GIKFLRCLHFKTVNVNGKDIEL--FIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~--ll~~cp~Le~L~l~~c~ 196 (427)
.+++|+.|+|.++.+. .+.. .+..+++|+.|++.++.
T Consensus 546 ~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp TTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSC
T ss_pred ccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCC
Confidence 3446666666655544 2222 34555566666665543
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.24 E-value=1.2e-07 Score=86.37 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEEEEee
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYG 238 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~ 238 (427)
++|++|+|.++.+..-. ...+..++.|+.|++.++...... .+-..+++|+.|.++++. +..+..
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~------------ 102 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPI------------ 102 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCT------------
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCH------------
Confidence 56777777776554311 012456777777777665422100 000123555666555443 221110
Q ss_pred eeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCCh
Q 014317 239 QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESL 316 (427)
Q Consensus 239 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~ 316 (427)
..+..++.|+.+.+..+.... .....+..+++|+.|++++ ..+. .+. .+..+++|++|+++.+.-....
T Consensus 103 ----~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 173 (270)
T 2o6q_A 103 ----GVFDQLVNLAELRLDRNQLKS---LPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRVP- 173 (270)
T ss_dssp ----TTTTTCSSCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred ----hHcccccCCCEEECCCCccCe---eCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEeC-
Confidence 012334445555554443211 1122234556666666665 3333 222 2345556666665322111100
Q ss_pred HHHHHHHHhCCCccEEEEEec
Q 014317 317 LGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 317 ~~l~~ll~~~p~L~~L~i~~~ 337 (427)
...+..+++|++|+++.+
T Consensus 174 ---~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 174 ---EGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp ---TTTTTTCTTCCEEECCSS
T ss_pred ---hhHhccCCCcCEEECCCC
Confidence 012345566666666543
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.24 E-value=2e-07 Score=87.38 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=70.7
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccE--EE----EE
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEE--IE----IS 227 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~--~~----i~ 227 (427)
.+..+++|++|+|.++.+..-. ....+.|+.|++.++...... ..-..+++|+.|.++++.- .. +. -.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~ 169 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGIENGAFQG 169 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCC----SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-CGGGBCTTGGGG
T ss_pred HhcCCCCCCEEECCCCcCCccC----hhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-CccCcChhhccC
Confidence 3455566666666555443210 011255666666555322110 0011235556665555431 10 00 01
Q ss_pred CCceeEEEEeeeeeeee-ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEE
Q 014317 228 APSLLSFRYYGQAIKIN-IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDL 304 (427)
Q Consensus 228 ~p~L~~L~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L 304 (427)
.++|++|++.++..... ..-.+.|+.+++..+.... .....+..+++|+.|++++ +.+. .+..+..+++|++|
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK---VDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCE---ECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEE
T ss_pred CCCcCEEECCCCccccCCccccccCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEE
Confidence 35556665554432111 1112455555555444211 1122234555666666655 2222 22234455556665
Q ss_pred EEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 305 RLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 305 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+++.+.-. .++..+..+++|+.|+++.+
T Consensus 246 ~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 246 HLNNNKLV-----KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ECCSSCCS-----SCCTTTTTCSSCCEEECCSS
T ss_pred ECCCCcCc-----cCChhhccCCCcCEEECCCC
Confidence 55332111 11122345566666666543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.24 E-value=8.2e-07 Score=90.29 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=43.9
Q ss_pred CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317 122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL 201 (427)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l 201 (427)
.+++.|.+..+... .+| . .+++|++|+|+++.+.. +. ...++|+.|++.++....
T Consensus 61 ~~L~~L~L~~N~l~-----~lp----------~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~l~~-- 115 (622)
T 3g06_A 61 AHITTLVIPDNNLT-----SLP----------A---LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPLTH-- 115 (622)
T ss_dssp TTCSEEEECSCCCS-----CCC----------C---CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCCCCC--
T ss_pred CCCcEEEecCCCCC-----CCC----------C---cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCcCCC--
Confidence 57888888765321 223 1 34666666666665442 11 145666666666553221
Q ss_pred EEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317 202 RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ 239 (427)
Q Consensus 202 ~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~ 239 (427)
+....++|+.|.++++. +..+....++|++|+++++
T Consensus 116 -l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 116 -LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN 151 (622)
T ss_dssp -CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred -CCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCC
Confidence 01122455555554443 3322222345555555444
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.24 E-value=7.1e-07 Score=87.60 Aligned_cols=178 Identities=19% Similarity=0.141 Sum_probs=127.9
Q ss_pred CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317 122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL 201 (427)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l 201 (427)
++++.|.+....-. .+| +..+++|++|+|.++.+.+-. +..++.|+.|++.++.-.+ +
T Consensus 64 ~~L~~L~Ls~n~l~-----~~~------------~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~-l 121 (457)
T 3bz5_A 64 TGLTKLICTSNNIT-----TLD------------LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTK-L 121 (457)
T ss_dssp TTCSEEECCSSCCS-----CCC------------CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCSC-C
T ss_pred CCCCEEEccCCcCC-----eEc------------cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCCe-e
Confidence 58888888765321 122 568899999999998877643 6789999999999885433 3
Q ss_pred EEecCccccceEEEEecCCccEEEEE-CCceeEEEEeeee-e-eeeccCCcccceeeeeeccccccchhhccccccCCCc
Q 014317 202 RVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRYYGQA-I-KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQL 278 (427)
Q Consensus 202 ~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~~~~~-~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 278 (427)
.+ ..+++|+.|.++++. +..+.+. .++|++|++.++. . ...+..++.|+.+++..+....+ . +..++++
T Consensus 122 ~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l----~--l~~l~~L 193 (457)
T 3bz5_A 122 DV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL----D--VSQNKLL 193 (457)
T ss_dssp CC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC----C--CTTCTTC
T ss_pred cC-CCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee----c--cccCCCC
Confidence 32 346899999998876 5555443 4899999998762 2 33567889999999988774331 1 5788999
Q ss_pred eEEEEeccceeecccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 279 KTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
+.|.+++ ..+... .+..+++|++|+++.+.-. + +. +..+++|+.|+++.+.
T Consensus 194 ~~L~l~~-N~l~~~-~l~~l~~L~~L~Ls~N~l~--~---ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 194 NRLNCDT-NNITKL-DLNQNIQLTFLDCSSNKLT--E---ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CEEECCS-SCCSCC-CCTTCTTCSEEECCSSCCS--C---CC--CTTCTTCSEEECCSSC
T ss_pred CEEECcC-CcCCee-ccccCCCCCEEECcCCccc--c---cC--ccccCCCCEEEeeCCc
Confidence 9999997 444421 3677889999998544222 2 22 5789999999998664
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.24 E-value=9.8e-08 Score=87.07 Aligned_cols=121 Identities=13% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE----ECCceeE
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI----SAPSLLS 233 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~ 233 (427)
++|++|+|.++.+.+-.. ..+..++.|+.|++.++.... +.. -..+++|+.|.++++. +..+.. ..++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 467888877766543211 124567788888887764321 111 1134667777776654 333321 1256666
Q ss_pred EEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317 234 FRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS 285 (427)
Q Consensus 234 L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 285 (427)
|++.++... ..+..++.|+.+.+..+.... ..+...+..+++|+.|++++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCCCEEECCC
Confidence 666544221 124556666666666554221 01233345667777777766
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.23 E-value=3e-07 Score=84.58 Aligned_cols=192 Identities=19% Similarity=0.150 Sum_probs=100.4
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeee
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQ 239 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~ 239 (427)
++|+.|+|.++.+..-.. ..+..++.|+.|.+.++.... +.....+++|+.|.++++. +..+
T Consensus 31 ~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~-l~~l--------------- 92 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQ-LQSL--------------- 92 (290)
T ss_dssp TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSC-CSSC---------------
T ss_pred CCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCc-CCcC---------------
Confidence 678888888776543211 125667888888887765322 2222344666666666554 2211
Q ss_pred eeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChH
Q 014317 240 AIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLL 317 (427)
Q Consensus 240 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~ 317 (427)
+..+..++.|+.+++..+.... .....+..+++|+.|.+++ +.+. .+ ..+..+++|+.|.++.+.-. ...
T Consensus 93 --~~~~~~l~~L~~L~l~~N~l~~---l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~l~ 164 (290)
T 1p9a_G 93 --PLLGQTLPALTVLDVSFNRLTS---LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLT--ELP 164 (290)
T ss_dssp --CCCTTTCTTCCEEECCSSCCCC---CCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCS--CCC
T ss_pred --chhhccCCCCCEEECCCCcCcc---cCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCC--ccC
Confidence 1223456666666666555221 2223345677777777776 3443 33 33456677777777432111 111
Q ss_pred HHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEecee--cCccHHHHHHHHHhcccc
Q 014317 318 GLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGFL--GRQFDVELAQYLFQNATM 385 (427)
Q Consensus 318 ~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f~--g~~~e~~~~~~ll~~a~~ 385 (427)
...+..+++|+.|.++.+.-...+.. -....+|+.+.+.+-. ..+....+..++-++...
T Consensus 165 --~~~~~~l~~L~~L~L~~N~l~~ip~~------~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~ 226 (290)
T 1p9a_G 165 --AGLLNGLENLDTLLLQENSLYTIPKG------FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226 (290)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGG
T ss_pred --HHHhcCcCCCCEEECCCCcCCccChh------hcccccCCeEEeCCCCccCcCccHHHHHHHHhCccc
Confidence 12345677888888765432211111 1123367777776532 233334555566555443
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.21 E-value=1.5e-07 Score=89.52 Aligned_cols=63 Identities=6% Similarity=0.066 Sum_probs=35.3
Q ss_pred CCCC-CCcEEEEeeEEeChh---hHHHHHhcC-CccceeeeccCCCceeE-E-Ee---cCc-cccceEEEEecC
Q 014317 157 SGIK-FLRCLHFKTVNVNGK---DIELFIQNC-PLLDRLCVDHSKTLVRL-R-VI---GSS-IQLKYLEIQSCY 219 (427)
Q Consensus 157 ~~~~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~c~~~~~l-~-i~---~~~-~~L~~L~l~~c~ 219 (427)
..++ +|++|+|+++.+.+. .+..++..+ +.|++|++.+|.-.... . +. ..+ ++|++|.+++|.
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 3556 777777777776543 344444444 77777777777532210 0 00 011 467777776665
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.19 E-value=8.3e-07 Score=88.57 Aligned_cols=150 Identities=12% Similarity=0.125 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHh--cCCccceeeeccCCCceeE--EEe----cCccc------------------
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQ--NCPLLDRLCVDHSKTLVRL--RVI----GSSIQ------------------ 209 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~----~~~~~------------------ 209 (427)
+..+++|+.|++.++.+.+..+..+.. .++.|+.|++.+|...+.+ .+. ..++.
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 456788888888888887765555443 2678999998877422110 000 12233
Q ss_pred --------cceEEEEecCCccEEE--EECCceeEEEEeeeee----eeeccCCcccceeeeeeccccccchhhccccccC
Q 014317 210 --------LKYLEIQSCYLMEEIE--ISAPSLLSFRYYGQAI----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCF 275 (427)
Q Consensus 210 --------L~~L~l~~c~~l~~~~--i~~p~L~~L~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 275 (427)
|+.|.++++. +..+. -..++|++|+++++.. +..+..++.|+.+.+..+....+. .+...+..+
T Consensus 296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-HHHHHHTTC
T ss_pred hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-cchHHHhhC
Confidence 4444444433 11111 1235666666665532 123345666666666655432110 122234566
Q ss_pred CCceEEEEeccceee-cccc-cCCCCceeEEEEE
Q 014317 276 PQLKTLELDSCNEVY-MQFS-LFELPKLIDLRLR 307 (427)
Q Consensus 276 ~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~ 307 (427)
++|+.|+++++.-.. ++.. +..+++|++|+++
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 667777776522222 3332 3445566666653
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.18 E-value=9.2e-08 Score=91.01 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=23.4
Q ss_pred CCCcEEEEeeEEeChh---hHHHHHhcC-CccceeeeccCC
Q 014317 160 KFLRCLHFKTVNVNGK---DIELFIQNC-PLLDRLCVDHSK 196 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~c~ 196 (427)
++|++|+|+++.+++. .+...+..+ +.|+.|++.+|.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 6777777777766542 344445555 677777777665
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=1.6e-06 Score=77.21 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=116.1
Q ss_pred CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEE-eChhhHHHHHhcCCccceeeeccCCCcee
Q 014317 122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVN-VNGKDIELFIQNCPLLDRLCVDHSKTLVR 200 (427)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~c~~~~~ 200 (427)
..++.|.+...... .+|. ..+..+++|++|+|.++. +..-. ...+..++.|+.|++.+|..+..
T Consensus 31 ~~l~~L~l~~n~l~-----~i~~---------~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-----TIPS---------HAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp TTCCEEEEESCCCS-----EECT---------TTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCE
T ss_pred CcccEEEEeCCcce-----EECH---------HHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeE
Confidence 37788888765321 2232 135688999999999875 43210 01256799999999998665554
Q ss_pred EEEe--cCccccceEEEEecCCccEEEE--ECCcee---EEEEeee-eee----eeccCCcccc-eeeeeeccccccchh
Q 014317 201 LRVI--GSSIQLKYLEIQSCYLMEEIEI--SAPSLL---SFRYYGQ-AIK----INIENVPQLV-DVSIRGSHTFRVTYF 267 (427)
Q Consensus 201 l~i~--~~~~~L~~L~l~~c~~l~~~~i--~~p~L~---~L~~~~~-~~~----~~~~~~~~L~-~l~l~~~~~~~~~~~ 267 (427)
+... ..+++|+.|.++++. +..+.- ..++|+ +|++.+. ... ..+.+++.|+ .+++..+....+.
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-- 172 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-- 172 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC--
T ss_pred cCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC--
Confidence 3311 245889999999875 333221 235666 8888876 332 1356788898 9888776532211
Q ss_pred hccccccCCCceEEEEeccceee-c-ccccCCC-CceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317 268 VGPIISCFPQLKTLELDSCNEVY-M-QFSLFEL-PKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL 336 (427)
Q Consensus 268 ~~~~~~~~~~l~~L~l~~~~~~~-~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 336 (427)
...+.. ++|+.|+++++..+. + +..+..+ ++|+.|+++.+.-. .... ..+++|+.|.+..
T Consensus 173 -~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~-----~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 173 -GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPS-----KGLEHLKELIARN 235 (239)
T ss_dssp -TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC--CCCC-----TTCTTCSEEECTT
T ss_pred -HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc--cCCh-----hHhccCceeeccC
Confidence 122233 789999999843354 4 3445667 89999988543221 1110 2578899988753
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.15 E-value=5.3e-07 Score=81.97 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~ 219 (427)
.+..+++|++|+|.++.+..- ...++..++.|+.|++.++...... ..-..+++|+.|.++++.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc
Confidence 467889999999998776531 1123567899999999887533210 111234677777777654
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.14 E-value=1.3e-07 Score=88.01 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=16.9
Q ss_pred CCCCcEEEEeeEEeChhhHHHH-HhcCCccceeeeccC
Q 014317 159 IKFLRCLHFKTVNVNGKDIELF-IQNCPLLDRLCVDHS 195 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~l~~c 195 (427)
+++|++|+|.++.+.+.....+ +..++.|+.|++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC
Confidence 4555555555555442211111 144555555555544
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.14 E-value=5.8e-07 Score=75.31 Aligned_cols=64 Identities=22% Similarity=0.110 Sum_probs=38.4
Q ss_pred ccCCCceEEEEeccceee-cc--cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 273 SCFPQLKTLELDSCNEVY-MQ--FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
..+++|+.|.+++ +.+. .+ ..+..+++|++|+++.+.-.. ........+..+|+|+.|++..+.
T Consensus 92 ~~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 92 EKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETT
T ss_pred hhCCCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCC
Confidence 4567777777776 3333 22 455667777777774432211 111112467789999999988764
No 81
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=2.2e-07 Score=88.05 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=57.7
Q ss_pred cHHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeC--------hhhHHHHHh
Q 014317 111 DITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVN--------GKDIELFIQ 182 (427)
Q Consensus 111 ~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~--------~~~l~~ll~ 182 (427)
.+.+++.......++.|.+..+. .+.... ..... .+..+...|++|+.|.+..+... ..++..++.
T Consensus 96 ~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~---~~~~~--~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 96 LMDKILKDKKLPSLKQITIGXWG-YEGEDC---SDIAD--GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp HHHHHHHCTTGGGCSEEEECCCC-SSSCCS---HHHHH--HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred HHHHHhcCCCchhcceEEEcccc-cCCCcH---HHHHH--HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 44455544444568888886542 110000 00000 11223456899999999775432 224778899
Q ss_pred cCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317 183 NCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 183 ~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 219 (427)
.+|.|++|.|.++.+.....+ .+++|++|.+..|.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGG 204 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSB
T ss_pred cCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCC
Confidence 999999999987743321111 13677777776554
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.12 E-value=3.9e-07 Score=83.83 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR 235 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~ 235 (427)
+..+++|++|+|.++.+.+-.- ++.++.|+.|.+.++.... +.--..+++|+.|.++++. +..+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-i~~~----------- 127 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNG-ISDI----------- 127 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSC-CCCC-----------
T ss_pred HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCCc-CCCC-----------
Confidence 4567888888888877654221 6778888888887765322 1111234566666665554 2221
Q ss_pred EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCC
Q 014317 236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRE 314 (427)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 314 (427)
-.+..++.|+.++++.+....+ ..+..+++|+.|.+++ +.+. .+. +..+++|++|+++.+.-.
T Consensus 128 -------~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N~i~-- 191 (291)
T 1h6t_A 128 -------NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKNHIS-- 191 (291)
T ss_dssp -------GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCC--
T ss_pred -------hhhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCCCcCC--
Confidence 1234566777777766553221 2356788888888887 3444 332 667788888887443221
Q ss_pred ChHHHHHHHHhCCCccEEEEEecc
Q 014317 315 SLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 315 ~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
+. . -+..+++|+.|++..+.
T Consensus 192 ~l---~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 192 DL---R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp BC---G-GGTTCTTCSEEEEEEEE
T ss_pred CC---h-hhccCCCCCEEECcCCc
Confidence 22 1 25678888888888763
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.09 E-value=6.5e-07 Score=82.33 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=95.7
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEE----ECCce
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEI----SAPSL 231 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L 231 (427)
+..+++|+.|+|.++.+..-.. ...+|.|+.|++.++...........+++|+.|.++++. +..+.. ..++|
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGEL 126 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTC
T ss_pred hhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCC
Confidence 5678999999999877654211 157899999999887543211112345788888887765 333321 13677
Q ss_pred eEEEEeeeeeee----eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEE
Q 014317 232 LSFRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRL 306 (427)
Q Consensus 232 ~~L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 306 (427)
++|++.++.... .+..++.|+.+++..+... ......+..+++|+.|.+++ +.+. ++..+....+|++|.+
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEEC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCC---ccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEe
Confidence 777776653321 2345667777777665522 22223345677777777776 4444 5555556667777777
Q ss_pred EEEccCCC-ChHHHHHHHHh
Q 014317 307 RVTTPNRE-SLLGLTCIMKA 325 (427)
Q Consensus 307 ~~~~~~~~-~~~~l~~ll~~ 325 (427)
..+...+. +..++...++.
T Consensus 203 ~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 203 HGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp CSCCBCCSGGGHHHHHHHHH
T ss_pred CCCCccCcCccHHHHHHHHh
Confidence 54432221 34444444444
No 84
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=2.8e-07 Score=77.18 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=40.1
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEE---Eec---CccccceEEEEecCCc
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLR---VIG---SSIQLKYLEIQSCYLM 221 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~---i~~---~~~~L~~L~l~~c~~l 221 (427)
..|+.|+|+++.+++..+..+ ++||.|+.|+|.+|..+++-. +.. .+++|++|.+++|..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 468888888887777777664 678888888888887665421 111 1245777777766643
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.07 E-value=3.1e-07 Score=93.24 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=39.5
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 219 (427)
+..+++|+.|+|.++.+.+-.- +..++.|+.|.|.+|.... +.....+++|+.|.+++|.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSC
T ss_pred HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCC
Confidence 5678888888888877654221 6778888888888775322 1111234677777776664
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.07 E-value=1.4e-07 Score=87.76 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=41.2
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHh--cCCccceeeeccCCCceeE--EEe-cCccccceEEEEecC
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQ--NCPLLDRLCVDHSKTLVRL--RVI-GSSIQLKYLEIQSCY 219 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~l~~c~~~~~l--~i~-~~~~~L~~L~l~~c~ 219 (427)
...++.|.+.++.+.+..+..+.. .++.|++|++.+|...+.. .+. ..+++|+.|.++++.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence 346788888888888766655443 3577999999888643321 111 335788888888776
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.06 E-value=5.8e-06 Score=87.59 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=8.2
Q ss_pred CCcccceeeeeecc
Q 014317 247 NVPQLVDVSIRGSH 260 (427)
Q Consensus 247 ~~~~L~~l~l~~~~ 260 (427)
+++.|+.+++..+.
T Consensus 424 ~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 424 RVPHLQILILNQNR 437 (844)
T ss_dssp TCTTCCEEEEESCC
T ss_pred cCCccceeeCCCCc
Confidence 45666666665554
No 88
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.05 E-value=3.9e-07 Score=93.36 Aligned_cols=177 Identities=11% Similarity=0.078 Sum_probs=99.5
Q ss_pred cCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCc-cceeeeccCCCceeEE-Eec-CccccceEEEEecCCcc----E
Q 014317 151 ESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPL-LDRLCVDHSKTLVRLR-VIG-SSIQLKYLEIQSCYLME----E 223 (427)
Q Consensus 151 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L~l~~c~~~~~l~-i~~-~~~~L~~L~l~~c~~l~----~ 223 (427)
.+| .+..+++|++|+|.++.+. .+..-+..++. |+.|++.++....... +.. .+++|+.|.++++.-.. .
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred chh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 456 6778889999999887765 22223677888 9999998876332111 111 12368888887765211 1
Q ss_pred EE------EECCceeEEEEeeeeeee----eccCCcccceeeeeeccccccchh-hccc---cccCCCceEEEEecccee
Q 014317 224 IE------ISAPSLLSFRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYF-VGPI---ISCFPQLKTLELDSCNEV 289 (427)
Q Consensus 224 ~~------i~~p~L~~L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~-~~~~---~~~~~~l~~L~l~~~~~~ 289 (427)
+. ...++|++|++.++.... .+..++.|+.+++..+....+... +... ...+++|+.|++++ +.+
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l 500 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF-NKL 500 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS-SCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC-CcC
Confidence 11 133578888887764321 123467788888776653221110 0000 12233777777776 333
Q ss_pred e-cccccC--CCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317 290 Y-MQFSLF--ELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL 336 (427)
Q Consensus 290 ~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 336 (427)
. ++..+. .+++|++|+|+.+.-. +++.-+..+++|+.|+++.
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFS-----KFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCS-----SCCCGGGGCSSCCEEECCS
T ss_pred CccChhhhhccCCCcCEEECCCCCCC-----CcChhhhcCCCCCEEECCC
Confidence 3 555544 6777777777433211 1223345677777777754
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.03 E-value=2.9e-07 Score=83.94 Aligned_cols=173 Identities=16% Similarity=0.160 Sum_probs=104.2
Q ss_pred CCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEE---EE-ECC
Q 014317 155 GLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEI---EI-SAP 229 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~---~i-~~p 229 (427)
.+..+++|++|+|.++.+..-. ...+..++.|+.|++.++...... ..-..+++|+.|.++++. +..+ .+ ..+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 4567889999999887654311 112567889999999887533211 111245788888887765 2221 12 247
Q ss_pred ceeEEEEeeeee-----eeeccCCcccceeeeeeccccccchhhccccccCCCce----EEEEeccceee-cccccCCCC
Q 014317 230 SLLSFRYYGQAI-----KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLK----TLELDSCNEVY-MQFSLFELP 299 (427)
Q Consensus 230 ~L~~L~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~----~L~l~~~~~~~-~~~~~~~~~ 299 (427)
+|++|++.+... +..+.+++.|+.+++..+....+ ....+..+++++ .|++++ +.+. .+.......
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~ 200 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEI 200 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhccccceeeecCC-CcccccCccccCCC
Confidence 899999887632 33567788999999988764321 111223333444 788876 4444 444444445
Q ss_pred ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+|++|+++.+.-.. .. ...+..+++|++|+++.+
T Consensus 201 ~L~~L~L~~n~l~~--~~--~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 201 RLKELALDTNQLKS--VP--DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEEECCSSCCSC--CC--TTTTTTCCSCCEEECCSS
T ss_pred cccEEECCCCceee--cC--HhHhcccccccEEEccCC
Confidence 78888885432211 11 134567888888888754
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.02 E-value=7.2e-07 Score=92.11 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.5
Q ss_pred HhccccccceEEEee
Q 014317 380 FQNATMLEKLIIEPS 394 (427)
Q Consensus 380 l~~a~~L~~l~i~~~ 394 (427)
+.+.+.|+.+.+...
T Consensus 580 ~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTTCTTCCEEECTTS
T ss_pred hCCCCCCCEEECCCC
Confidence 455677777776544
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.01 E-value=1.8e-06 Score=79.30 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR 235 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~ 235 (427)
+..+++|+.|+|.++.+.+- .. +..++.|+.|++.++.... +..-..+++|+.|.++++. +..+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~-l~~~----------- 149 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNK-ITDI----------- 149 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCC-----------
T ss_pred cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCc-CCcc-----------
Confidence 56889999999999887652 12 7789999999999885433 1111234677777777665 2222
Q ss_pred EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEc
Q 014317 236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTT 310 (427)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 310 (427)
-.+..++.|+.++++.+..... .. +..+++|+.|.+++ +.+.....+..+++|+.|+++.+.
T Consensus 150 -------~~l~~l~~L~~L~L~~N~l~~~----~~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 -------TVLSRLTKLDTLSLEDNQISDI----VP-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCC----GG-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -------hhhccCCCCCEEEccCCccccc----hh-hcCCCccCEEECCC-CcCCCChhhccCCCCCEEECcCCc
Confidence 0234566677777766553221 11 46777888888876 444422235677788888876654
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.00 E-value=2.6e-05 Score=78.58 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 219 (427)
+..+++|++|+|.++.+..-. ...+..++.|+.|++.++.-. .+.-. .+++|++|.++++.
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFND 132 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSC
T ss_pred hccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCC
Confidence 345556666666555443210 011344555666666555422 11111 23455555555544
No 93
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.98 E-value=3.1e-06 Score=76.72 Aligned_cols=37 Identities=22% Similarity=0.586 Sum_probs=35.0
Q ss_pred CCcCCCCChHHHHHHHhcCChHHHH-HHhhhhhhhhhh
Q 014317 13 EDLINRLPDDILVNIISHLTLKEAA-RTSVLSNRWRNL 49 (427)
Q Consensus 13 ~D~is~LPd~iL~~Ils~L~~~d~~-r~s~vskrW~~l 49 (427)
...+..||+|++..||++||.++++ |++.|||+|+.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 4588999999999999999999999 999999999987
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.97 E-value=2e-06 Score=88.75 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=87.5
Q ss_pred CCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCC--ccEEE---EE
Q 014317 154 RGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYL--MEEIE---IS 227 (427)
Q Consensus 154 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~--l~~~~---i~ 227 (427)
..+..+++|+.|+|.++.+.+.-....+.+++.|++|++.+|...... ..-..+++|+.|.+.++.. +..+. -.
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 345667777777777655432111112456777777777666421100 0001245666666655431 00000 01
Q ss_pred CCceeEEEEeeeeee----eeccCCcccceeeeeeccccccch-----hhccccccCCCceEEEEeccceee-ccc-ccC
Q 014317 228 APSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTY-----FVGPIISCFPQLKTLELDSCNEVY-MQF-SLF 296 (427)
Q Consensus 228 ~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~ 296 (427)
.++|+.|++.++... ..+.+++.|+.+++..+....+.. .....+..+++|+.|++++ +.+. ++. .+.
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~ 557 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFK 557 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcc
Confidence 367777777665332 124556777777776655322100 0111245667777777776 3333 332 345
Q ss_pred CCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 297 ELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 297 ~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
.+++|+.|+++.+.-.. .. ...+..+++|+.|+++.+
T Consensus 558 ~l~~L~~L~Ls~N~l~~--l~--~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNT--LP--ASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCSSCCCC--CC--TTTTTTCTTCCEEECTTS
T ss_pred cccCcceeECCCCCCCc--CC--HhHhCCCCCCCEEECCCC
Confidence 56666666663321111 10 112345666666666543
No 95
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.97 E-value=3.1e-06 Score=86.07 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=49.2
Q ss_pred cccceEEEEecCCccEEEEECCceeEEEEeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccc
Q 014317 208 IQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCN 287 (427)
Q Consensus 208 ~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 287 (427)
++|+.|.++++. +..+....++|+.|.+.++.........+.|+.++++.+.. ..+...+++|+.|.+++ +
T Consensus 181 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L-------~~lp~~l~~L~~L~Ls~-N 251 (622)
T 3g06_A 181 SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-------TSLPVLPSELKELMVSG-N 251 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCC-------SCCCCCCTTCCEEECCS-S
T ss_pred CCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCcc-------CcCCCCCCcCcEEECCC-C
Confidence 344444444433 22222223444444444443222112234455555544431 11224455666666665 3
Q ss_pred eee-cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 288 EVY-MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 288 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
.+. ++. .+++|++|+|+.+.-. .++.-+.++|+|+.|+|+++
T Consensus 252 ~L~~lp~---~~~~L~~L~Ls~N~L~-----~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 252 RLTSLPM---LPSGLLSLSVYRNQLT-----RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCC-----SCCGGGGGSCTTCEEECCSC
T ss_pred CCCcCCc---ccccCcEEeCCCCCCC-----cCCHHHhhccccCEEEecCC
Confidence 333 222 4456666665332111 12223456666666666554
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.96 E-value=1.7e-06 Score=87.69 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEEE
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSFR 235 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L~ 235 (427)
.+++|+.|.|.++.+..-. -+..+|.|+.|+|.+|....... ...+++|+.|.+++|. +..+. + ..++|+.|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEE
Confidence 3455555555554443211 14455666666665553221101 1233555556555543 22211 0 125555555
Q ss_pred Eeeeeee--eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccC
Q 014317 236 YYGQAIK--INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPN 312 (427)
Q Consensus 236 ~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 312 (427)
+.++.+. -.+..++.|+.|.++.+....+ ..+..+++|+.|.|+. +.+. .+. +..+++|++|+|+.+.-.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcC-CcCCCchh-hccCCCCCEEECcCCCCC
Confidence 5544221 1234455556555555442211 2234555666666655 2332 212 455555666555332111
Q ss_pred CCChHHHHHHHHhCCCccEEEEEec
Q 014317 313 RESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 313 ~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+. .-+..+++|+.|+|..+
T Consensus 189 --~l----~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 189 --DL----RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp --BC----GGGTTCTTCSEEECCSE
T ss_pred --CC----hHHccCCCCCEEEccCC
Confidence 11 12345566666665543
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.94 E-value=2.1e-06 Score=80.36 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=68.9
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEE-CCceeEEEE
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEIS-APSLLSFRY 236 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~-~p~L~~L~~ 236 (427)
+++|+.|+|.++.+..-. ...+..++.|++|++.++...... ..-..+++|++|.++++. +..+... .++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEEC
T ss_pred CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence 479999999987655321 112678999999999988643210 111246899999998875 4433222 279999999
Q ss_pred eeeeee----eeccCCcccceeeeeeccc
Q 014317 237 YGQAIK----INIENVPQLVDVSIRGSHT 261 (427)
Q Consensus 237 ~~~~~~----~~~~~~~~L~~l~l~~~~~ 261 (427)
.++... ..+.+++.|+.+++..+..
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 877432 2357788999999887653
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.91 E-value=6e-07 Score=73.58 Aligned_cols=61 Identities=23% Similarity=0.124 Sum_probs=33.4
Q ss_pred ccCCCceEEEEeccceee-cc--cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEE
Q 014317 273 SCFPQLKTLELDSCNEVY-MQ--FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQ 335 (427)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 335 (427)
..+++|+.|.+++ +.+. .+ ..+..+++|++|+++.+.-.. ........+..+|+|+.|+++
T Consensus 85 ~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 4566777777776 3333 22 455666777777763321111 111112466778888887653
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.90 E-value=3.4e-06 Score=75.65 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=31.0
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~ 219 (427)
++|+.|+|.++.+..-.- ..+..++.|+.|++.++...... ..-..+++|+.|.++++.
T Consensus 35 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 577777777766543211 12456777777777766432210 000123556666665543
No 100
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.87 E-value=3.3e-06 Score=75.70 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=32.9
Q ss_pred cCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317 15 LINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49 (427)
Q Consensus 15 ~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l 49 (427)
.|+.||+||+.+||+||+.+|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999975
No 101
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=7.2e-06 Score=68.64 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEE-eChhhHHHHHh---cCCccceeeeccCCCc
Q 014317 123 RVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVN-VNGKDIELFIQ---NCPLLDRLCVDHSKTL 198 (427)
Q Consensus 123 ~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~---~cp~Le~L~l~~c~~~ 198 (427)
.+++|+++.+... + ..+. .+.++++|++|+|.+|. +++..+..+.. .||.|++|+|.+|..+
T Consensus 62 ~L~~LDLs~~~It-d--~GL~-----------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSCIM-S--IGFD-----------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCCCC-G--GGGG-----------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCCcc-H--HHHH-----------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 5788888876422 1 1111 13578999999999996 89999998876 3889999999999877
Q ss_pred eeE--EEecCccccceEEEEecCCccE
Q 014317 199 VRL--RVIGSSIQLKYLEIQSCYLMEE 223 (427)
Q Consensus 199 ~~l--~i~~~~~~L~~L~l~~c~~l~~ 223 (427)
++- ..-+.+++|++|.+++|+.+..
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 642 2123568999999999986553
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.82 E-value=2e-05 Score=67.69 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=45.6
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCI 322 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 322 (427)
+..++.|+.+++..+.. .......+..+++|+.|.+++ ..+. .+..+..+++|++|+++.+.... +. . .
T Consensus 84 l~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~---~-~ 154 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDV---TSDKIPNLSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAIT-DI---M-P 154 (197)
T ss_dssp GTTCTTCCEEEEECTTC---BGGGSCCCTTCTTCCEEECCS-SBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC---G-G
T ss_pred hhcCCCCCEEEeECCcc---CcccChhhcCCCCCCEEEecC-CccCcHhHHHHhhCCCCCEEEccCCCCcc-cc---H-h
Confidence 34566666666666542 222223345677777777776 3333 34445666777777764432011 11 1 3
Q ss_pred HHhCCCccEEEEEec
Q 014317 323 MKACPFLQKLILQLN 337 (427)
Q Consensus 323 l~~~p~L~~L~i~~~ 337 (427)
+..+|+|+.|+++.+
T Consensus 155 l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 155 LKTLPELKSLNIQFD 169 (197)
T ss_dssp GGGCSSCCEEECTTB
T ss_pred hcCCCCCCEEECCCC
Confidence 566777777777544
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.80 E-value=3.4e-05 Score=77.65 Aligned_cols=239 Identities=13% Similarity=0.055 Sum_probs=138.9
Q ss_pred HHHHHHHHhcCCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeCh-----hhHHHHHhcCCc
Q 014317 112 ITNWVYTVLGKRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNG-----KDIELFIQNCPL 186 (427)
Q Consensus 112 ~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~-----~~l~~ll~~cp~ 186 (427)
+..+........+++|.+..+... ..+|..+|. ...++|+.|.+.++.... +.+..++. .+.
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~----~~ip~~~~~--------~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~ 332 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTIT----ERIDREEFT--------YSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMN 332 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEEC----SCCCCCCCC--------CCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCC
T ss_pred HHHHHHhhhcccccEEEEeccEee----ccccchhhh--------cccccchheehhhcccceeecChhhhhhhhc-cCc
Confidence 333344334457777777654211 133433221 112567777766665432 34444333 478
Q ss_pred cceeeeccCCCceeEEEecCccccceEEEEecCCccE-E---EEECCceeEEEEeeeeee------eeccCCcccceeee
Q 014317 187 LDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEE-I---EISAPSLLSFRYYGQAIK------INIENVPQLVDVSI 256 (427)
Q Consensus 187 Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~-~---~i~~p~L~~L~~~~~~~~------~~~~~~~~L~~l~l 256 (427)
|+.|.+.++..... .+...+++|+.|.++++. +.. + --..|+|++|++.++... ..+.+++.|+.+++
T Consensus 333 L~~L~l~~n~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIHM-VCPPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCCC-CCCSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCcccc-cCccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 99999998864332 222455889999998875 222 1 123589999999877443 23578899999999
Q ss_pred eeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEE
Q 014317 257 RGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL 334 (427)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i 334 (427)
..+.... ..-...+..+++|+.|.+++ +.+. .+..++ ++|+.|+++.+.-. .++.-+..+++|+.|++
T Consensus 411 ~~N~l~~--~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~--~~L~~L~L~~N~l~-----~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 411 SLNSLNS--HAYDRTCAWAESILVLNLSS-NMLTGSVFRCLP--PKVKVLDLHNNRIM-----SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TTSCCBS--CCSSCCCCCCTTCCEEECCS-SCCCGGGGSSCC--TTCSEEECCSSCCC-----CCCTTTTSSCCCSEEEC
T ss_pred CCCcCCC--ccChhhhcCcccCCEEECCC-CCCCcchhhhhc--CcCCEEECCCCcCc-----ccChhhcCCCCCCEEEC
Confidence 8776322 01223456789999999998 4443 333322 68999998544221 12222348899999999
Q ss_pred EeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHHHHHHHHH
Q 014317 335 QLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDVELAQYLF 380 (427)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~~~~~~ll 380 (427)
+.+.-...+... + ....+|+.+.+.+- .+......++...+
T Consensus 481 ~~N~l~~l~~~~---~--~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 523 (562)
T 3a79_B 481 ASNQLKSVPDGV---F--DRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523 (562)
T ss_dssp CSSCCCCCCTTS---T--TTCTTCCCEECCSCCBCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHH---H--hcCCCCCEEEecCCCcCCCcchHHHHHHHH
Confidence 876432211110 1 13467888888763 34444445545333
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.77 E-value=1.7e-05 Score=66.84 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=36.7
Q ss_pred ccCCCceEEEEeccceee-ccc--ccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 273 SCFPQLKTLELDSCNEVY-MQF--SLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
..+++|+.|.+++ +.+. .+. .+..+++|++|.++.+.-.. ....-..++..+|+|+.|+++.+
T Consensus 85 ~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 4667777777776 3443 333 45566777777764332211 11111235678899999888765
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.74 E-value=4.8e-05 Score=71.71 Aligned_cols=171 Identities=14% Similarity=0.073 Sum_probs=86.0
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEe--cCccccceEEEEecCCccEEEE----ECCceeE
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVI--GSSIQLKYLEIQSCYLMEEIEI----SAPSLLS 233 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~ 233 (427)
+++++|+|.+..+..=. ...++++++|++|+|.++...+.+... ..+++|+++.+..+..+..+.- ..++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 57888888877654200 012466788888888877655433211 1345666655555555655532 2378888
Q ss_pred EEEeeeeeee----eccCCcccceeeeeeccccccchhh-ccccccCCCceEEEEeccceee-cccccCCCCceeEEEEE
Q 014317 234 FRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYFV-GPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLR 307 (427)
Q Consensus 234 L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~ 307 (427)
|.+.+..... .......+..+.+..... +...- ..+......++.|.++. +.+. ++.......+|++|.+.
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccc--cccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhc
Confidence 8887764321 122233344444432211 11101 11222334577777776 4444 44444444456665552
Q ss_pred EEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 308 VTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 308 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
.+.... .+. ...+..+++|+.|+++.+
T Consensus 186 ~~n~l~-~i~--~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 186 DNNNLE-ELP--NDVFHGASGPVILDISRT 212 (350)
T ss_dssp TCTTCC-CCC--TTTTTTEECCSEEECTTS
T ss_pred cCCccc-CCC--HHHhccCcccchhhcCCC
Confidence 111111 111 123466778888888654
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=1.5e-05 Score=72.04 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=16.6
Q ss_pred CCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317 157 SGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS 195 (427)
Q Consensus 157 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 195 (427)
..+++|+.|+|.++.+.+-.- +..++.|+.|++.++
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN 95 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS
T ss_pred hhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC
Confidence 344555555555544433111 444555555555444
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.69 E-value=1.7e-05 Score=79.64 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=14.2
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccC
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHS 195 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c 195 (427)
++|+.|+|+++.+.. +. ..+++|+.|++.++
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDN 110 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCC
Confidence 445555555544431 11 23455555555544
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.64 E-value=2.1e-05 Score=70.34 Aligned_cols=146 Identities=17% Similarity=0.152 Sum_probs=81.3
Q ss_pred CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCcee
Q 014317 229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~ 302 (427)
++|++|++.+.... ..+..++.|+.+++..+... ......+..+++|+.|.+++ +.+. ++. .+..+++|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 134 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA---SLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLK 134 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc---ccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCccc
Confidence 55555555544321 12456777888887766532 22334456788899999887 4554 333 346778888
Q ss_pred EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecC-ccHHHHHHHH
Q 014317 303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGR-QFDVELAQYL 379 (427)
Q Consensus 303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~-~~e~~~~~~l 379 (427)
+|.++.+.-.. .. ...+..+++|+.|+++.+.-...... . + ....+|+.+.+.+- .+. ..-..+..++
T Consensus 135 ~L~Ls~N~l~~--~~--~~~~~~l~~L~~L~L~~N~l~~~~~~--~-~--~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 135 ELRLNTNQLQS--IP--AGAFDKLTNLQTLSLSTNQLQSVPHG--A-F--DRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp EEECCSSCCCC--CC--TTTTTTCTTCCEEECCSSCCSCCCTT--T-T--TTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred EEECcCCcCCc--cC--HHHcCcCcCCCEEECCCCcCCccCHH--H-H--hCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 88885432211 11 12346788999999876542221110 0 1 12467888888763 344 2333445555
Q ss_pred Hhcccccc
Q 014317 380 FQNATMLE 387 (427)
Q Consensus 380 l~~a~~L~ 387 (427)
.++...+.
T Consensus 206 ~~~~~~~~ 213 (251)
T 3m19_A 206 RENSNKVK 213 (251)
T ss_dssp HHSGGGBC
T ss_pred Hhccccee
Confidence 55554443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.61 E-value=1.2e-05 Score=70.48 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~ 237 (427)
+.++.|+|.+..+..-.....+..++.|+.|++.++.... +.- -..+++|+.|.++++. +..+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~------------- 96 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNR-LENV------------- 96 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCCC-------------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCc-cCcc-------------
Confidence 4677888887765432111225667888888887764221 110 0122444444444433 1111
Q ss_pred eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCC-
Q 014317 238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRE- 314 (427)
Q Consensus 238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~- 314 (427)
.+..+.+++.|+.+.+..+.... .....+..+++|+.|+|++ +.+. .+..+..+++|++|+++.+.-.+.
T Consensus 97 ---~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 97 ---QHKMFKGLESLKTLMLRSNRITC---VGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ---CGGGGTTCSSCCEEECTTSCCCC---BCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ---CHhHhcCCcCCCEEECCCCcCCe---ECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 01124556777777776655322 2233345778888888887 4444 345566777788887754432221
Q ss_pred ChHHHHHHHH
Q 014317 315 SLLGLTCIMK 324 (427)
Q Consensus 315 ~~~~l~~ll~ 324 (427)
...++...++
T Consensus 170 ~l~~l~~~~~ 179 (220)
T 2v70_A 170 YLAWLGEWLR 179 (220)
T ss_dssp GGHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3344444444
No 110
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.60 E-value=1.8e-05 Score=77.31 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=38.7
Q ss_pred ccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhhccc
Q 014317 10 EISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNLWTF 52 (427)
Q Consensus 10 ~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~lw~~ 52 (427)
.-..|.|+.||+|++.+||++|+.+|.++++.|||+|+++...
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 4457999999999999999999999999999999999987444
No 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.56 E-value=7.2e-06 Score=78.07 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=90.6
Q ss_pred CCCCcEEEEeeEEeChhh---HHHHHhc-CCccceeeeccCCCcee-E-EEecCccccceEEEEecCCccEEEEECCcee
Q 014317 159 IKFLRCLHFKTVNVNGKD---IELFIQN-CPLLDRLCVDHSKTLVR-L-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLL 232 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~---l~~ll~~-cp~Le~L~l~~c~~~~~-l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~ 232 (427)
.++|+.|+|.++.+++.. +...+.. ++.|++|+|.+|...+. + .+...+++|++|.+++|. +......+ |
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~--L- 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKD--L- 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHH--H-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHH--H-
Confidence 357888888887777644 3333332 36888888877753210 0 111122455555555553 11100000 0
Q ss_pred EEEEeeeeeeeeccCCcccceeeeeeccccc-cchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEE
Q 014317 233 SFRYYGQAIKINIENVPQLVDVSIRGSHTFR-VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLR 305 (427)
Q Consensus 233 ~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~ 305 (427)
........+.|+.+++..+.... -...+...+..+++|+.|+|++ +.+. +...+...++|++|+
T Consensus 147 --------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 147 --------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp --------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred --------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 00000234556666666655221 0112333446788899999987 3443 344556667899998
Q ss_pred EEEEccCCCChHHHHHHHHhCCCccEEEEEecc
Q 014317 306 LRVTTPNRESLLGLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 306 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 338 (427)
|+.+.-.......+...+..+|+|++|+++.+.
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 855433322334566677788999999997653
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.55 E-value=2.2e-05 Score=68.83 Aligned_cols=144 Identities=11% Similarity=0.038 Sum_probs=77.5
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEEEEee
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYG 238 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~ 238 (427)
++|+.|+|.+..+..-. ...+..++.|+.|+|.++...... ..-..+++|+.|.++++. +..+.
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------- 96 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELP------------- 96 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCC-------------
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccC-------------
Confidence 67888888877654311 012456788888888776432110 000123455555554443 21110
Q ss_pred eeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCC-C
Q 014317 239 QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRE-S 315 (427)
Q Consensus 239 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~-~ 315 (427)
+..+.+++.|+.+.+..+.... .....+..+++|+.|+|++ +.+. ++ ..+..+++|++|+++.+.-.+. .
T Consensus 97 ---~~~f~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 97 ---KSLFEGLFSLQLLLLNANKINC---LRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ---HhHccCCCCCCEEECCCCCCCE---eCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 1123556677777776665322 2233456778888888887 4444 33 3456677888888754432221 4
Q ss_pred hHHHHHHHHh
Q 014317 316 LLGLTCIMKA 325 (427)
Q Consensus 316 ~~~l~~ll~~ 325 (427)
..++...+..
T Consensus 170 l~~l~~~l~~ 179 (220)
T 2v9t_B 170 LKWLADYLHT 179 (220)
T ss_dssp GHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 5555555554
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.54 E-value=2.6e-05 Score=76.39 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=97.5
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEee
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYG 238 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~ 238 (427)
.++|++|++.++.+.. +.. +..++.|+.|++.++.-.. +....++|+.|.++++. +..+....++|++|++++
T Consensus 214 ~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 214 PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSE 286 (454)
T ss_dssp CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS---CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc---ccccccccCEEECCCCc-ccccCcccCcCCEEECcC
Confidence 3689999999887652 222 6689999999998875332 12223689999998876 444433457899999887
Q ss_pred eeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCCChH
Q 014317 239 QAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRESLL 317 (427)
Q Consensus 239 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 317 (427)
+.....-.-.+.|+.+++..+... .+....++++.|++++ +.+. ++. .+++|+.|+++.+.-. ..
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~-------~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L~L~~N~l~--~l- 352 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSN-NKLIELPA---LPPRLERLIASFNHLA--EV- 352 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCS-------EECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCS--CC-
T ss_pred CccCcccCcCCcCCEEECcCCcCC-------cccCCcCcCCEEECCC-Cccccccc---cCCcCCEEECCCCccc--cc-
Confidence 644321122357888888766522 1222235888999887 4433 332 3578888888543221 11
Q ss_pred HHHHHHHhCCCccEEEEEecc
Q 014317 318 GLTCIMKACPFLQKLILQLND 338 (427)
Q Consensus 318 ~l~~ll~~~p~L~~L~i~~~~ 338 (427)
.. .+++|++|+++.+.
T Consensus 353 --p~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 353 --PE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp --CC---CCTTCCEEECCSSC
T ss_pred --cc---hhhhccEEECCCCC
Confidence 11 36789999987654
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.53 E-value=1.3e-05 Score=81.52 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=74.0
Q ss_pred cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHHHH
Q 014317 246 ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIM 323 (427)
Q Consensus 246 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll 323 (427)
...+.++.+.+..+... .......+..+++|+.|+|++| .+. .+..+..+++|+.|.|+.+.-.... ...+
T Consensus 466 ~~~~~L~~L~Ls~N~~~--~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----~~~~ 538 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----TFPY 538 (635)
T ss_dssp TTCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCC----CGGG
T ss_pred ccchhhhhhhhhhcccc--cccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCC----hhHH
Confidence 44566676666554321 1123344577888999999874 444 3556677888888888433211111 1235
Q ss_pred HhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEec--eecCccHHHHHHHHHhccc
Q 014317 324 KACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHG--FLGRQFDVELAQYLFQNAT 384 (427)
Q Consensus 324 ~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~--f~g~~~e~~~~~~ll~~a~ 384 (427)
..+++|+.|+++.+.-....... + .....+|+.+.+.+ |...+.-.+|..++-++..
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~---l-~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQE---L-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSC---T-TCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred hCCCCCCEEECCCCcCCCCCHHH---H-HhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 67889999998765422211110 1 11236799999876 4555555666776655443
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.52 E-value=8.8e-06 Score=70.57 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE-EEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~ 237 (427)
.++|+.|+|.+..+..- ....+..++.|++|++.++...... ..-..+++|++|.++++. +..+.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~------------ 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP------------ 92 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC------------
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccC------------
Confidence 46888888888766531 1123567888888888776432110 000123555666555543 22110
Q ss_pred eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCC
Q 014317 238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRES 315 (427)
Q Consensus 238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~ 315 (427)
...+..++.|+.+++..+... ......+..+++|+.|++++ +.+. .+. .+..+++|++|+++.+..
T Consensus 93 ----~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~---- 160 (208)
T 2o6s_A 93 ----NGVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW---- 160 (208)
T ss_dssp ----TTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB----
T ss_pred ----HhHhcCccCCCEEEcCCCcCc---ccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe----
Confidence 011345666777777665522 12223346778888888887 4444 333 356677888887743311
Q ss_pred hHHHHHHHHhCCCccEEEEEec
Q 014317 316 LLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 316 ~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
...||+|+.|.+..+
T Consensus 161 -------~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 161 -------DCTCPGIRYLSEWIN 175 (208)
T ss_dssp -------CCCTTTTHHHHHHHH
T ss_pred -------ecCCCCHHHHHHHHH
Confidence 134666776666544
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.50 E-value=0.00016 Score=63.68 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=84.6
Q ss_pred CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCcee
Q 014317 229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~ 302 (427)
++|+.|+++++.+. ..+.+++.|+.+++..+... ......+..+++|+.|+|++ +.+. ++ ..+..+++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---CcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhC
Confidence 56666666555332 23566788888888777632 22233456889999999997 4555 33 3456788899
Q ss_pred EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccCCCCCCcccccCCCCccCCccEEEEece--ecCccHH-HHHHHH
Q 014317 303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQQFPKYSHQHLKVVELHGF--LGRQFDV-ELAQYL 379 (427)
Q Consensus 303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~f--~g~~~e~-~~~~~l 379 (427)
+|.++.+.-. .+..-+..+++|+.|+++.+.-....... + ....+|+.+.+.+- .+...++ .+..++
T Consensus 116 ~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~~~~~~~---~--~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~ 185 (229)
T 3e6j_A 116 ELFMCCNKLT-----ELPRGIERLTHLTHLALDQNQLKSIPHGA---F--DRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185 (229)
T ss_dssp EEECCSSCCC-----SCCTTGGGCTTCSEEECCSSCCCCCCTTT---T--TTCTTCCEEECTTSCBCTTBGGGHHHHHHH
T ss_pred eEeccCCccc-----ccCcccccCCCCCEEECCCCcCCccCHHH---H--hCCCCCCEEEeeCCCccCCcchhHHHHHHH
Confidence 9888543222 12233478899999999765322211110 1 12467888888753 3334333 344556
Q ss_pred Hhccccc
Q 014317 380 FQNATML 386 (427)
Q Consensus 380 l~~a~~L 386 (427)
..+...+
T Consensus 186 ~~~~~~~ 192 (229)
T 3e6j_A 186 ADHTSIA 192 (229)
T ss_dssp HHCGGGE
T ss_pred HhCcccc
Confidence 5555554
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.47 E-value=8e-05 Score=72.86 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=49.5
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-E-ECCceeEEEE
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-I-SAPSLLSFRY 236 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i-~~p~L~~L~~ 236 (427)
.++|++|+|.++.+..- .. +..++.|+.|++.++...+ ++...++|+.|.++++. +..+. + ..++|++|++
T Consensus 172 ~~~L~~L~L~~n~l~~l--~~-~~~l~~L~~L~l~~N~l~~---l~~~~~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l 244 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNI-LEELPELQNLPFLTTIYA 244 (454)
T ss_dssp CTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSS---CCCCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEEC
T ss_pred cccccEEECcCCcCCcC--cc-ccCCCCCCEEECCCCcCCc---CCCCcCcccEEECcCCc-CCcccccCCCCCCCEEEC
Confidence 35788888877765541 11 5667777777777765322 11112466677666654 22221 1 1356666666
Q ss_pred eeeeeeeeccCCcccceeeeeecc
Q 014317 237 YGQAIKINIENVPQLVDVSIRGSH 260 (427)
Q Consensus 237 ~~~~~~~~~~~~~~L~~l~l~~~~ 260 (427)
.++.....-...+.|+.+++..+.
T Consensus 245 ~~N~l~~l~~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 245 DNNLLKTLPDLPPSLEALNVRDNY 268 (454)
T ss_dssp CSSCCSSCCSCCTTCCEEECCSSC
T ss_pred CCCcCCcccccccccCEEECCCCc
Confidence 654322111223455666555443
No 118
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.45 E-value=6.6e-05 Score=72.90 Aligned_cols=42 Identities=24% Similarity=0.496 Sum_probs=38.2
Q ss_pred ccccCCCcCCCCChHHHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317 8 KEEISEDLINRLPDDILVNIISHLTLKEAARTSVLSNRWRNL 49 (427)
Q Consensus 8 ~~~~~~D~is~LPd~iL~~Ils~L~~~d~~r~s~vskrW~~l 49 (427)
++....|.++.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus 11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 345567999999999999999999999999999999999875
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.37 E-value=1.4e-05 Score=67.29 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR 235 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~ 235 (427)
+..+++|+.|+|.++.+.. +..+...+|.|+.|++.++.-.+ +..-..+++|+.|.++++. +..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~~~~--------- 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LDGFPLLRRLKTLLVNNNR-ICRIGE--------- 81 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-ECCCCCCSSCCEEECCSSC-CCEECS---------
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-ccccccCCCCCEEECCCCc-ccccCc---------
Confidence 3456788888888776653 22233345588888887774332 2111234566666666554 333210
Q ss_pred EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccc----cCCCCceeEEEEEE
Q 014317 236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFS----LFELPKLIDLRLRV 308 (427)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~----~~~~~~L~~L~l~~ 308 (427)
..+..++.|+.++++.+....+.. ...+..+++|+.|.+++ +.+. .+.. +..+++|+.|+++.
T Consensus 82 -------~~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 82 -------GLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -------CHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred -------chhhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 012445666666666554321111 11345778888888877 3333 3332 56677888877644
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.35 E-value=2.4e-05 Score=65.30 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecC
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~ 219 (427)
.++|++|+|.++.+.++.+...+..++.|+.|++.+|.... +..-..+++|+.|.++++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCc
Confidence 35666666666665533333334556666666666664222 1111234556666666554
No 121
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.31 E-value=6.9e-05 Score=72.57 Aligned_cols=39 Identities=28% Similarity=0.527 Sum_probs=36.3
Q ss_pred cCCCcCCCCChH----HHHHHHhcCChHHHHHHhhhhhhhhhh
Q 014317 11 ISEDLINRLPDD----ILVNIISHLTLKEAARTSVLSNRWRNL 49 (427)
Q Consensus 11 ~~~D~is~LPd~----iL~~Ils~L~~~d~~r~s~vskrW~~l 49 (427)
-..|.|+.||+| |+.+||++|+.++.++++.|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 357999999999 999999999999999999999999954
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=6.5e-05 Score=67.76 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=103.7
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEE-EECCceeEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIE-ISAPSLLSF 234 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~-i~~p~L~~L 234 (427)
+..+++|+.|++.++.+..-. -+..++.|+.|++.++.-.+... -..+++|+.|.++++. +..+. +..++|+.|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEE
Confidence 356789999999988766422 26789999999999885332111 2356899999999876 33221 112899999
Q ss_pred EEeeeeeee--eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEEEEEccC
Q 014317 235 RYYGQAIKI--NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRLRVTTPN 312 (427)
Q Consensus 235 ~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 312 (427)
++.++.... .+..++.|+.++++.+....+ ..+..+++|+.|++++ +.+.....+..+++|+.|+++.+...
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCC-CcCcchHHhccCCCCCEEeCCCCccc
Confidence 998874322 367789999999988774332 2357899999999998 55553366678899999999776543
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.20 E-value=0.00011 Score=74.72 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=33.4
Q ss_pred CceeEEEEeeee-----eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-c-ccccCCCCce
Q 014317 229 PSLLSFRYYGQA-----IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-M-QFSLFELPKL 301 (427)
Q Consensus 229 p~L~~L~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~-~~~~~~~~~L 301 (427)
++|+.|++.+.. .+..+..++.|+.++++.+.. .......+..+++|+.|.|++ +.+. + +..+..+++|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L---~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL---EQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc---CCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCC
Confidence 455555554431 122344455555555555442 112222334555556666555 3333 2 2233445555
Q ss_pred eEEEE
Q 014317 302 IDLRL 306 (427)
Q Consensus 302 ~~L~l 306 (427)
+.|+|
T Consensus 545 ~~L~L 549 (635)
T 4g8a_A 545 QVLDY 549 (635)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 55555
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.18 E-value=0.00019 Score=62.81 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=40.6
Q ss_pred cCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCCChHHHHHHH
Q 014317 246 ENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRESLLGLTCIM 323 (427)
Q Consensus 246 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll 323 (427)
..++.|+.+++..+... ......+..+++|+.|+|++ +.+. ++. .+..+++|++|.|+.+.-.... ...+
T Consensus 53 ~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~----~~~~ 124 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANKINCLR----VDAF 124 (220)
T ss_dssp TTCTTCCEEECCSSCCC---EECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTT
T ss_pred hCCCCCCEEECCCCcCC---CcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCCCCCEeC----HHHc
Confidence 44555555555554421 11222345566666666665 3433 332 2345566666666433211110 1223
Q ss_pred HhCCCccEEEEEec
Q 014317 324 KACPFLQKLILQLN 337 (427)
Q Consensus 324 ~~~p~L~~L~i~~~ 337 (427)
..+++|+.|+++.+
T Consensus 125 ~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 125 QDLHNLNLLSLYDN 138 (220)
T ss_dssp TTCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCC
Confidence 45667777777654
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.18 E-value=0.0001 Score=64.86 Aligned_cols=35 Identities=23% Similarity=0.087 Sum_probs=20.2
Q ss_pred CccceeeeccCCCceeE-EEecCccccceEEEEecC
Q 014317 185 PLLDRLCVDHSKTLVRL-RVIGSSIQLKYLEIQSCY 219 (427)
Q Consensus 185 p~Le~L~l~~c~~~~~l-~i~~~~~~L~~L~l~~c~ 219 (427)
+.|+.|++.++...... ..-..+++|+.|.++++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 77888888877533210 001134667777776654
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.05 E-value=0.00026 Score=61.83 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=29.3
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEE
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRL 306 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l 306 (427)
+.+++.|+.+++..+.... .....+..+++|+.|.+++ +.+. .+..+..+++|++|+|
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLEN---VQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTTCTTCCEEECCSSCCCC---CCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEEC
T ss_pred hCCCCCCCEEECCCCccCc---cCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEEC
Confidence 3455566666665554221 2222345566666666665 3333 2334455555666555
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.04 E-value=1.8e-05 Score=64.51 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=60.1
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~ 237 (427)
.+++|+.|++.++.+.++.+...+..++.|+.|++.+|..... ..-..+++|+.|.++++. +...
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~------------- 79 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGG------------- 79 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSC-------------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccch-------------
Confidence 3456666666666655333333445666777777766632221 111123455555555443 1110
Q ss_pred eeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc----ccCCCCceeEEEE
Q 014317 238 GQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF----SLFELPKLIDLRL 306 (427)
Q Consensus 238 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~----~~~~~~~L~~L~l 306 (427)
.+..+..++.|+.+++..+..... .....+..+++|+.|.++++ .+. .+. .+..+++|+.|++
T Consensus 80 ---~~~~~~~l~~L~~L~ls~N~i~~~--~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 80 ---LEVLAEKCPNLTHLNLSGNKIKDL--STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ---THHHHHHCTTCCEEECTTSCCCSH--HHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ---HHHHhhhCCCCCEEECCCCcCCCh--HHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 011122344455555544432110 01123456677777777763 333 222 3455666666643
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.01 E-value=0.00011 Score=69.51 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCCcEEEEeeEEeChhhHHHHHh-cCCccceeeeccCCCceeEEE--ecCccccceEEEEecCCccEEEE----ECCcee
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQ-NCPLLDRLCVDHSKTLVRLRV--IGSSIQLKYLEIQSCYLMEEIEI----SAPSLL 232 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~l~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~ 232 (427)
+.++.|+|++..+..-.- ..+. .+++|+.|+|.++.... +.- -..+++|+.|.++++. +..+.- ..++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 456777777665443111 1122 56777777776654221 110 0123556666665544 333311 124455
Q ss_pred EEEEeeeeee----eeccCCcccceeeeeecc
Q 014317 233 SFRYYGQAIK----INIENVPQLVDVSIRGSH 260 (427)
Q Consensus 233 ~L~~~~~~~~----~~~~~~~~L~~l~l~~~~ 260 (427)
.|++.++.+. ..+.+++.|+.+++..+.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 5544443221 123445555555555544
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.94 E-value=0.00056 Score=64.28 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCceEEEEEecCCCCCccccccccccccccCCCCCCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeE
Q 014317 122 KRVQYIKLDLWPGRYGHYYTFPKEFYNSIESGRGLSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRL 201 (427)
Q Consensus 122 ~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l 201 (427)
.++++|.+....-. .+|.. .+.++++|++|+|+++.+...--...+.+++.|.++.+..+..+..+
T Consensus 30 ~~l~~L~Ls~N~i~-----~i~~~---------~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-----VIQKG---------AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TTCSEEEEESCCCS-----EECTT---------SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CCCCEEEccCCcCC-----CcCHH---------HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 46777777654221 23322 34577788888887764321100011345666666555555444433
Q ss_pred EE--ecCccccceEEEEecC
Q 014317 202 RV--IGSSIQLKYLEIQSCY 219 (427)
Q Consensus 202 ~i--~~~~~~L~~L~l~~c~ 219 (427)
.- -..+++|+.|.++++.
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEEC
T ss_pred Cchhhhhccccccccccccc
Confidence 11 1234667777776654
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.88 E-value=0.00026 Score=71.07 Aligned_cols=139 Identities=11% Similarity=0.047 Sum_probs=86.5
Q ss_pred CCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEe
Q 014317 158 GIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYY 237 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~ 237 (427)
.+++|+.|+|+++.+.. +.. +. .+|+.|++.++.... ++..+++|+.|.++++. +..+.-..++|+.|+++
T Consensus 98 ~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~l~~---lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQLTM---LPELPALLEYINADNNQ-LTMLPELPTSLEVLSVR 168 (571)
T ss_dssp CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCSC---CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred ccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCcCCC---CCCcCccccEEeCCCCc-cCcCCCcCCCcCEEECC
Confidence 46899999999887654 222 22 289999998875332 11145789999988776 44443345789999888
Q ss_pred eeeeeee--ccCCcccceeeeeeccccccchhhc-cccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEE
Q 014317 238 GQAIKIN--IENVPQLVDVSIRGSHTFRVTYFVG-PIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVT 309 (427)
Q Consensus 238 ~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 309 (427)
++.+... +. +.|+.++++.+....+.. +. .+....+.++.|++++ +.+. +|..+..+++|+.|+|+.+
T Consensus 169 ~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 169 NNQLTFLPELP--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred CCCCCCcchhh--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 7642211 22 678888888776332111 11 1111122339999997 5555 7776767889999988544
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.82 E-value=8.1e-06 Score=70.30 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=54.4
Q ss_pred CCCCCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEE
Q 014317 156 LSGIKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFR 235 (427)
Q Consensus 156 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~ 235 (427)
+..+++|++|+|.++.+..- . .+..++.|+.|++.++...........+++|+.|.++++. +..+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l--~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l----------- 108 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL----------- 108 (198)
T ss_dssp HHHTTTCSEEECSEEEESCC--C-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCH-----------
T ss_pred HhcCCCCCEEECCCCCCccc--c-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcC-----------
Confidence 45677788888887776552 2 3556777777777766321100000112456666655543 2211
Q ss_pred EeeeeeeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEec
Q 014317 236 YYGQAIKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDS 285 (427)
Q Consensus 236 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 285 (427)
+ .+..++.|+.+++..+....+.. ...+..+++|+.|.+++
T Consensus 109 ------~-~~~~l~~L~~L~l~~N~i~~~~~--~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 109 ------S-GIEKLVNLRVLYMSNNKITNWGE--IDKLAALDKLEDLLLAG 149 (198)
T ss_dssp ------H-HHHHHHHSSEEEESEEECCCHHH--HHHHTTTTTCSEEEECS
T ss_pred ------C-ccccCCCCCEEECCCCcCCchhH--HHHHhcCCCCCEEEecC
Confidence 0 12344555666555544221110 12345677777777776
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.75 E-value=0.00049 Score=65.01 Aligned_cols=143 Identities=19% Similarity=0.189 Sum_probs=76.4
Q ss_pred CccceeeeccCCCceeEE---EecCccccceEEEEecCCccEEEE----ECCceeEEEEeeeeeee----eccCCcccce
Q 014317 185 PLLDRLCVDHSKTLVRLR---VIGSSIQLKYLEIQSCYLMEEIEI----SAPSLLSFRYYGQAIKI----NIENVPQLVD 253 (427)
Q Consensus 185 p~Le~L~l~~c~~~~~l~---i~~~~~~L~~L~l~~c~~l~~~~i----~~p~L~~L~~~~~~~~~----~~~~~~~L~~ 253 (427)
+.++.|+|.++.... +. +...+++|+.|.++++. +..+.. ..++|++|+++++.+.. .+.+++.|+.
T Consensus 39 ~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 458888888764322 21 11134778888887765 554432 13677777777664322 2455677777
Q ss_pred eeeeeccccccchhhccccccCCCceEEEEeccceee-ccccc----CCCCceeEEEEEEEccCCCChHHHHHHHHhCCC
Q 014317 254 VSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSL----FELPKLIDLRLRVTTPNRESLLGLTCIMKACPF 328 (427)
Q Consensus 254 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~ 328 (427)
+++..+... ......+..+++|+.|.|++ +.+. ++... ..+++|++|+|+.+.-.... ...+...|.
T Consensus 117 L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~~ 188 (361)
T 2xot_A 117 LLLYNNHIV---VVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLPA 188 (361)
T ss_dssp EECCSSCCC---EECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSCH
T ss_pred EECCCCccc---EECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhccH
Confidence 777666532 22223345667777777776 4443 33222 34667777776433221111 123344554
Q ss_pred --ccEEEEEec
Q 014317 329 --LQKLILQLN 337 (427)
Q Consensus 329 --L~~L~i~~~ 337 (427)
|+.|.+..+
T Consensus 189 ~~l~~l~l~~N 199 (361)
T 2xot_A 189 WVKNGLYLHNN 199 (361)
T ss_dssp HHHTTEECCSS
T ss_pred hhcceEEecCC
Confidence 366666654
No 133
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.63 E-value=0.0012 Score=56.81 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLLGLTCI 322 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 322 (427)
+..++.|+.+++..+... ......+..+++|+.|++++ +.+. .+ ..+..+++|++|+++.+.-.. .. ...
T Consensus 48 ~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~--~~~ 119 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQ---SLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALNTNQLQS--LP--DGV 119 (208)
T ss_dssp TTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC--TTT
T ss_pred hcccccCcEEECCCCccC---ccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCEEEcCCCcCcc--cC--HhH
Confidence 345666777766655422 12223345667777777776 3333 32 234566777777764332111 10 122
Q ss_pred HHhCCCccEEEEEec
Q 014317 323 MKACPFLQKLILQLN 337 (427)
Q Consensus 323 l~~~p~L~~L~i~~~ 337 (427)
+..+++|++|++..+
T Consensus 120 ~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQN 134 (208)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hccCCcCCEEECCCC
Confidence 456777777777654
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.62 E-value=6.2e-05 Score=71.58 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=66.9
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCcee-E-EEe----cCccccceEEEEecCCccEEEEECCceeE
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVR-L-RVI----GSSIQLKYLEIQSCYLMEEIEISAPSLLS 233 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~-l-~i~----~~~~~L~~L~l~~c~~l~~~~i~~p~L~~ 233 (427)
++|++|+|+++.+++..+..+...++.|+.|+|.+|.-.+. . .+. ...++|++|.+++|. +......
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~------ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVA------ 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHH------
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHH------
Confidence 56777777777776666666666666777777776642210 0 000 112455555555554 2110000
Q ss_pred EEEeeeeeeeeccCCcccceeeeeecccccc-chhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEE
Q 014317 234 FRYYGQAIKINIENVPQLVDVSIRGSHTFRV-TYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRL 306 (427)
Q Consensus 234 L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l 306 (427)
.....+...+.|+.++++.+..... ...+...+...++|+.|+|++| .+. +...+...++|++|+|
T Consensus 174 ------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 174 ------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp ------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred ------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEec
Confidence 0000112344455555554442110 0122333456677888888773 333 2233445677888877
Q ss_pred EEE
Q 014317 307 RVT 309 (427)
Q Consensus 307 ~~~ 309 (427)
+.+
T Consensus 247 s~N 249 (372)
T 3un9_A 247 YFN 249 (372)
T ss_dssp TTS
T ss_pred cCC
Confidence 433
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.0053 Score=56.98 Aligned_cols=222 Identities=14% Similarity=0.150 Sum_probs=110.8
Q ss_pred eeEEEEEEecCCCCCccHHHHHHHHhcCCceEEEEEecCCC--CCccccccc-cc--cccccCCC-CCCC--------CC
Q 014317 95 INEFKVRFDLCDFHQSDITNWVYTVLGKRVQYIKLDLWPGR--YGHYYTFPK-EF--YNSIESGR-GLSG--------IK 160 (427)
Q Consensus 95 l~~l~l~~~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~--~~~~~~lp~-~~--~~~l~lp~-~~~~--------~~ 160 (427)
|..+.+...... ..+ +++... ..+++.|++...... ......+|. .. +....+|. .|.+ ++
T Consensus 27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 788888754321 112 233221 457888888754321 000011221 00 00123343 4556 89
Q ss_pred CCcEEEEee-E-EeChhhHHHHHhcCCccceeeeccCCCceeEEEec--Cccccce-----------------EEEEecC
Q 014317 161 FLRCLHFKT-V-NVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG--SSIQLKY-----------------LEIQSCY 219 (427)
Q Consensus 161 ~L~~L~L~~-~-~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~--~~~~L~~-----------------L~l~~c~ 219 (427)
+|++|.|.+ + .+++.. +.+|++|+.|.+.+..... +.-.+ .|.++.. ..+.+|.
T Consensus 102 ~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 102 TLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp TCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred CCcEEECCccccchhHHH----hhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 999999986 1 244444 5679999999997553210 00000 1122222 2233444
Q ss_pred CccE-EEE---------------ECCceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCce
Q 014317 220 LMEE-IEI---------------SAPSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLK 279 (427)
Q Consensus 220 ~l~~-~~i---------------~~p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 279 (427)
.++. +.+ ...++..+.+.+.... .....++.|+.+++..+... ..-...+..|++|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~---~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT---TIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC---EECTTTTTTCTTCC
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc---eecHhhhhCCCCCC
Confidence 3331 111 1233444444443111 01123678888888765422 22233457889999
Q ss_pred EEEEeccceee-cc-cccCCCCcee-EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEe
Q 014317 280 TLELDSCNEVY-MQ-FSLFELPKLI-DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQL 336 (427)
Q Consensus 280 ~L~l~~~~~~~-~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 336 (427)
.|++.. + +. ++ ..+..+.+|+ .+.+... -.... ...+.+|++|++|.+..
T Consensus 254 ~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~--~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 254 KIKLPH-N-LKTIGQRVFSNCGRLAGTLELPAS---VTAIE--FGAFMGCDNLRYVLATG 306 (329)
T ss_dssp EEECCT-T-CCEECTTTTTTCTTCCEEEEECTT---CCEEC--TTTTTTCTTEEEEEECS
T ss_pred EEECCc-c-cceehHHHhhCChhccEEEEEccc---ceEEc--hhhhhCCccCCEEEeCC
Confidence 999986 3 44 33 3457778888 8887321 00110 12357899999999853
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.29 E-value=0.00086 Score=57.11 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=23.4
Q ss_pred CCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCC
Q 014317 160 KFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 160 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~ 196 (427)
++|++|+|.+..+..-.-...+..++.|+.|++.++.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~ 65 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC
Confidence 4788888888766432111225567777777777664
No 137
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.27 E-value=0.016 Score=54.48 Aligned_cols=10 Identities=0% Similarity=-0.041 Sum_probs=6.4
Q ss_pred CceeEEEEee
Q 014317 229 PSLLSFRYYG 238 (427)
Q Consensus 229 p~L~~L~~~~ 238 (427)
|+|++|.+.+
T Consensus 139 ~~L~~L~l~~ 148 (362)
T 2ra8_A 139 AHFEGLFWGD 148 (362)
T ss_dssp TTCSEEEECC
T ss_pred chhhheeecC
Confidence 6777776643
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.09 E-value=0.0028 Score=53.99 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=29.8
Q ss_pred cccCCCceEEEEeccceee-ccc-ccCCCCceeEEEEEEEc--cCCCChHHHHHHHHh
Q 014317 272 ISCFPQLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTT--PNRESLLGLTCIMKA 325 (427)
Q Consensus 272 ~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~--~~~~~~~~l~~ll~~ 325 (427)
+..+++|+.|.|++ +.+. ++. .+..+++|++|.++.+. |.+ ...++...+..
T Consensus 98 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c-~l~~l~~~~~~ 153 (193)
T 2wfh_A 98 FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLYCDC-NMQWLSDWVKS 153 (193)
T ss_dssp TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEECSG-GGHHHHHHHHH
T ss_pred hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCeecCC-cCHHHHHHHHh
Confidence 45677777777776 4444 333 34566777777775432 222 44555555543
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.09 E-value=0.0021 Score=54.73 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=25.3
Q ss_pred ccCCCceEEEEeccceee-c-ccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 273 SCFPQLKTLELDSCNEVY-M-QFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 273 ~~~~~l~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
..+++|+.|++++ +.+. + +..+..+++|++|.|+.+.-.... ...+...++|+.|+++.+
T Consensus 51 ~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 51 SNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCIP----PRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSS
T ss_pred hcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccCEeC----HHHhCCCCCCCEEECCCC
Confidence 3445555555554 3333 1 223344455555555322111100 112345566666666543
No 140
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.08 E-value=0.0016 Score=55.10 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=74.9
Q ss_pred hhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccC
Q 014317 266 YFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDH 339 (427)
Q Consensus 266 ~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 339 (427)
..+...+...++++.|+|++|..+. +...+...++|++|+|+.+.-++.....+...+...++|++|+|+.+.-
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3455666788888888888742443 3444566778888888544333334445666777888999998875531
Q ss_pred CCCCCc--ccccCCCCccCCccEEEE--ecee-cCccHHHHHHHHHhccccccceEEEeec
Q 014317 340 GRRLGK--KRQQFPKYSHQHLKVVEL--HGFL-GRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 340 ~~~~~~--~~~~~~~~~~~~L~~v~i--~~f~-g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
.. .|. .-..+. ...+|+++.+ .+-. |.+....++ -.+...+.|+++.+..+.
T Consensus 106 ~~-~g~~~l~~~L~--~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SG-SGILALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CH-HHHHHHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSS
T ss_pred CH-HHHHHHHHHHH--hCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEEeccCCC
Confidence 11 110 001011 2347888888 4333 333323333 455667889999987655
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.04 E-value=0.0043 Score=52.65 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=33.8
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEE
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVT 309 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~ 309 (427)
+.+++.|+.+++..+... ......+..+++|+.|++++ +.+. .+..+..+++|++|+++.+
T Consensus 74 ~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIK---EISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTTCTTCCEEECCSCCCC---EECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCcccCCEEECCCCcCC---ccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 445566666666655522 22223345667777777776 4443 3445566667777766443
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.99 E-value=0.0027 Score=63.75 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=9.8
Q ss_pred HHHhcCCccceee
Q 014317 179 LFIQNCPLLDRLC 191 (427)
Q Consensus 179 ~ll~~cp~Le~L~ 191 (427)
..++.++.|+.|+
T Consensus 403 ~~l~~l~~L~~L~ 415 (567)
T 1dce_A 403 ETLQYFSTLKAVD 415 (567)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCc
Confidence 4566788888888
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.95 E-value=0.0036 Score=52.25 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.9
Q ss_pred HhCCCccEEEEEec
Q 014317 324 KACPFLQKLILQLN 337 (427)
Q Consensus 324 ~~~p~L~~L~i~~~ 337 (427)
..+++|+.|+++.+
T Consensus 97 ~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 97 DKLTQLKELALDTN 110 (177)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hCCcccCEEECcCC
Confidence 45566666666543
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.76 E-value=0.0022 Score=54.22 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=41.6
Q ss_pred cCCcccceeeeeec-cccc-cchhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChH
Q 014317 246 ENVPQLVDVSIRGS-HTFR-VTYFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLL 317 (427)
Q Consensus 246 ~~~~~L~~l~l~~~-~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~ 317 (427)
...+.|+++++..+ .... -...+...+...++|+.|+|++ ..+. +...+...++|++|+|+.+.-+.....
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 34455555555544 3211 0012233334556666666665 2332 223334445666666644333222333
Q ss_pred HHHHHHHhCCCccEEEE
Q 014317 318 GLTCIMKACPFLQKLIL 334 (427)
Q Consensus 318 ~l~~ll~~~p~L~~L~i 334 (427)
.+...+...++|++|+|
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 34455556666777666
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.66 E-value=0.00098 Score=66.98 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCceeEEEecCccccceEEEEecCCccEEEEECCceeEEEEeeee
Q 014317 161 FLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIGSSIQLKYLEIQSCYLMEEIEISAPSLLSFRYYGQA 240 (427)
Q Consensus 161 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~~~i~~p~L~~L~~~~~~ 240 (427)
.|+.|+|+++.+.. +.. +..++.|+.|++.++....-...-..+++|+.|.++++. +..+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l---------------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV---------------- 501 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC----------------
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC----------------
Confidence 58888888877654 223 677888999998877533110111245778888887665 3322
Q ss_pred eeeeccCCcccceeeeeeccccccchhh-ccccccCCCceEEEEeccceee-cccc----cCCCCceeEEE
Q 014317 241 IKINIENVPQLVDVSIRGSHTFRVTYFV-GPIISCFPQLKTLELDSCNEVY-MQFS----LFELPKLIDLR 305 (427)
Q Consensus 241 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-~~~~----~~~~~~L~~L~ 305 (427)
+ .+.+++.|+.++++.+.... .. ...+..+++|+.|.+++ +.+. .+.. ...+++|+.|+
T Consensus 502 -p-~l~~l~~L~~L~Ls~N~l~~---~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 -D-GVANLPRLQELLLCNNRLQQ---SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -G-GGTTCSSCCEEECCSSCCCS---SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -c-ccCCCCCCcEEECCCCCCCC---CCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 1 24566777777776665322 11 33456788888888887 4443 2221 23467777774
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=95.63 E-value=0.0019 Score=55.22 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=10.9
Q ss_pred HHHHHHHhccccccceE
Q 014317 374 ELAQYLFQNATMLEKLI 390 (427)
Q Consensus 374 ~~~~~ll~~a~~L~~l~ 390 (427)
.+...++.+.+.|+.+.
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 34455667777777664
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.62 E-value=0.013 Score=48.62 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=56.2
Q ss_pred CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCcee
Q 014317 229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~ 302 (427)
++|++|++.+..+. ..+.+++.|+.+++..+.... .....+..+++|+.|+|++ +.+. ++. .+..+++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCC
Confidence 45666666554322 234567778888777766322 2233346778888888887 5554 333 456777888
Q ss_pred EEEEEEEccCCC--ChHHHHHHHHhCCCc
Q 014317 303 DLRLRVTTPNRE--SLLGLTCIMKACPFL 329 (427)
Q Consensus 303 ~L~l~~~~~~~~--~~~~l~~ll~~~p~L 329 (427)
+|.|+.+.-.+. +..++...++..+.+
T Consensus 106 ~L~L~~N~~~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 106 HIWLLNNPWDCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp EEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred EEEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence 888755433222 345555555554443
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.48 E-value=0.0014 Score=68.02 Aligned_cols=142 Identities=12% Similarity=0.073 Sum_probs=59.1
Q ss_pred CCCCcEEEEeeEEeChhhHHHHHhcCCccceeeeccCCCce-----eEEEecCccccceEEEEecCCccEEE---EECCc
Q 014317 159 IKFLRCLHFKTVNVNGKDIELFIQNCPLLDRLCVDHSKTLV-----RLRVIGSSIQLKYLEIQSCYLMEEIE---ISAPS 230 (427)
Q Consensus 159 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~c~~~~-----~l~i~~~~~~L~~L~l~~c~~l~~~~---i~~p~ 230 (427)
-+.+++|.|....+... ...+.....|..+.|....... .......++.|+.|.++++. +..+. ...++
T Consensus 172 ~~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcc--hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCC
Confidence 36788888876655432 1112223344444443321110 00111234678888877665 33221 13467
Q ss_pred eeEEEEeeeee---eeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEE
Q 014317 231 LLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRL 306 (427)
Q Consensus 231 L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 306 (427)
|++|+++++.+ +..+.+++.|+.|+++.+... .+..-+..+++|+.|.|++ +.+. ++..+..+++|++|+|
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT----SLPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS----SCCSSGGGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEEC
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC----ccChhhcCCCCCCEEECCC-CCCCccChhhhcCCCccEEeC
Confidence 77777776533 233556777777777766632 2233346677788888876 3444 5656667777777777
Q ss_pred EE
Q 014317 307 RV 308 (427)
Q Consensus 307 ~~ 308 (427)
+.
T Consensus 324 ~~ 325 (727)
T 4b8c_D 324 EG 325 (727)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.39 E-value=0.0035 Score=64.99 Aligned_cols=57 Identities=11% Similarity=0.020 Sum_probs=37.1
Q ss_pred CceeEEEEeeee---eeeeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee
Q 014317 229 PSLLSFRYYGQA---IKINIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY 290 (427)
Q Consensus 229 p~L~~L~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 290 (427)
++|+.|+++++. ++..+.+++.|+.+.+..+.... +..-+..+++|+.|.|++ +.+.
T Consensus 270 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~----lp~~~~~l~~L~~L~L~~-N~l~ 329 (727)
T 4b8c_D 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT----LPWEFGNLCNLQFLGVEG-NPLE 329 (727)
T ss_dssp TTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC----CCSSTTSCTTCCCEECTT-SCCC
T ss_pred CCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc----cChhhhcCCCccEEeCCC-CccC
Confidence 445555554442 23345778899999998876322 333367899999999998 4443
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.28 E-value=0.023 Score=47.26 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=66.8
Q ss_pred CceeEEEEeeeeeee----eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCcee
Q 014317 229 PSLLSFRYYGQAIKI----NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~ 302 (427)
++|++|++.+..... .+..++.|+.+++..+... ......+..+++|+.|++++ +.+. .+ ..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ---SLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---EeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccC
Confidence 688899888764321 2466788999999877632 22333456889999999998 5555 33 3457788999
Q ss_pred EEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 303 DLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 303 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+|+++.+.-.. .. ...+..+++|++|+++.+
T Consensus 104 ~L~l~~N~l~~--~~--~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 104 ELALDTNQLKS--VP--DGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EEECCSSCCSC--CC--TTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcceE--eC--HHHhcCCcccCEEEecCC
Confidence 99985442221 11 123466788888888654
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.07 E-value=0.011 Score=56.44 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=26.2
Q ss_pred cccCCCceEEEEeccceee------cc-cccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEE
Q 014317 272 ISCFPQLKTLELDSCNEVY------MQ-FSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLIL 334 (427)
Q Consensus 272 ~~~~~~l~~L~l~~~~~~~------~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i 334 (427)
+..|++|+.+.+.. .... ++ ..+..+++|+.+.+. ......+ ...+.+|++|+.+.|
T Consensus 267 F~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~----~~i~~I~-~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 267 FYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIP----ESIRILG-QGLLGGNRKVTQLTI 330 (401)
T ss_dssp TTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCC----TTCCEEC-TTTTTTCCSCCEEEE
T ss_pred hhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeC----CceEEEh-hhhhcCCCCccEEEE
Confidence 35666666666654 2211 22 233455566666552 1100000 112356666776666
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.68 E-value=0.038 Score=45.93 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=43.5
Q ss_pred CceeEEEEeeeeee----eeccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-ccc-ccCCCCcee
Q 014317 229 PSLLSFRYYGQAIK----INIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQF-SLFELPKLI 302 (427)
Q Consensus 229 p~L~~L~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~-~~~~~~~L~ 302 (427)
++|+.|++.+..+. ..+.+++.|+.+++..+.... .....+..+++|+.|+|++ +.+. ++. .+..+++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---IPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---cChhHhCCcchhhEEECCC-CccceeCHHHhccccCCC
Confidence 45666665554321 234566677777776665322 2223345677777777776 4444 333 355667777
Q ss_pred EEEEEEEc
Q 014317 303 DLRLRVTT 310 (427)
Q Consensus 303 ~L~l~~~~ 310 (427)
+|.|+.+.
T Consensus 109 ~L~L~~N~ 116 (174)
T 2r9u_A 109 HIYLYNNP 116 (174)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 77775443
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.65 E-value=0.074 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=13.3
Q ss_pred hhhHHHHHhcCCccceeeeccC
Q 014317 174 GKDIELFIQNCPLLDRLCVDHS 195 (427)
Q Consensus 174 ~~~l~~ll~~cp~Le~L~l~~c 195 (427)
..++..+...|+.|+.|++.++
T Consensus 215 ~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 215 NADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp HHHHHHHHHHCTTCCEEECTTB
T ss_pred HHHHHHHHHhcCCCeEEECCCC
Confidence 3344444555777777777654
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=92.69 E-value=0.023 Score=47.29 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=23.8
Q ss_pred cccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccc-cCCCCceeEEEE
Q 014317 249 PQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFS-LFELPKLIDLRL 306 (427)
Q Consensus 249 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l 306 (427)
+.|+.+++..+.... .....+..+++|+.|+|++ +.+. ++.. +..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK---LEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCCccc---cCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEEC
Confidence 445555555444211 1222334555555555555 3333 2222 234455555554
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.67 E-value=0.061 Score=44.40 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=6.5
Q ss_pred ccCCCceEEEEec
Q 014317 273 SCFPQLKTLELDS 285 (427)
Q Consensus 273 ~~~~~l~~L~l~~ 285 (427)
..+++|+.|+|++
T Consensus 51 ~~l~~L~~L~Ls~ 63 (170)
T 3g39_A 51 DRLTQLTRLDLDN 63 (170)
T ss_dssp TTCTTCSEEECCS
T ss_pred cCcccCCEEECCC
Confidence 3445555555554
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=90.93 E-value=0.59 Score=44.41 Aligned_cols=166 Identities=12% Similarity=0.094 Sum_probs=98.8
Q ss_pred CCCCCCCCcEEEEeeE---EeChhhHHHHHhcCCccceeeeccCCCceeEEEec--CccccceEEEEecCCccEEEEEC-
Q 014317 155 GLSGIKFLRCLHFKTV---NVNGKDIELFIQNCPLLDRLCVDHSKTLVRLRVIG--SSIQLKYLEIQSCYLMEEIEISA- 228 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~---~~~~~~l~~ll~~cp~Le~L~l~~c~~~~~l~i~~--~~~~L~~L~l~~c~~l~~~~i~~- 228 (427)
+|.+|++|+.+.|... .+....+. |..|+.+.+.+. +..+.-.+ .|++|+.+.+.. ++..+.-.|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF 245 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTT
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCcccccc
Confidence 5678899999999753 24455543 788999988632 22222111 356777777653 233332221
Q ss_pred --CceeEEEEeeeee---eeeccCCcccceeeeeeccccc--cchhhccccccCCCceEEEEeccceee-cc-cccCCCC
Q 014317 229 --PSLLSFRYYGQAI---KINIENVPQLVDVSIRGSHTFR--VTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELP 299 (427)
Q Consensus 229 --p~L~~L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~ 299 (427)
.+|+.+.+..... ...+.+++.|+.+.+....... ....-...+..|++|+.+.+.. .+. +. ..+..+.
T Consensus 246 ~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 246 RESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR 323 (401)
T ss_dssp TTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred ccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence 5677777744321 2356788999999887644210 1112234457899999999984 344 33 3456778
Q ss_pred ceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEec
Q 014317 300 KLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLN 337 (427)
Q Consensus 300 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 337 (427)
+|+.+.|..+ -..+. ...+.+| +|+++.+..+
T Consensus 324 ~L~~l~lp~~---l~~I~--~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 324 KVTQLTIPAN---VTQIN--FSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SCCEEEECTT---CCEEC--TTSSSSS-CCCEEEECCS
T ss_pred CccEEEECcc---ccEEc--HHhCCCC-CCCEEEEcCC
Confidence 8999888211 10110 1234678 9999999765
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.54 E-value=0.25 Score=45.69 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=44.3
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cccccCCCCceeEEEEEEEccCCC-ChHHHHHH
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQFSLFELPKLIDLRLRVTTPNRE-SLLGLTCI 322 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l 322 (427)
+.++++|+.|+++.+.. .......+..+++|+.|+|++ +.+. ++.......+|+.|.|..+.-.+. .+.++...
T Consensus 52 ~~~l~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~ 127 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127 (347)
T ss_dssp SCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHH
T ss_pred hccccCCCEEECCCCcc---ceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHH
Confidence 56677788888877663 223334456788888888887 5555 443332222388888754433222 34445444
Q ss_pred HH
Q 014317 323 MK 324 (427)
Q Consensus 323 l~ 324 (427)
++
T Consensus 128 ~~ 129 (347)
T 2ifg_A 128 EE 129 (347)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.07 E-value=0.11 Score=46.42 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCC--ceeEEEEEEEccCCC---ChHHHHH
Q 014317 247 NVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELP--KLIDLRLRVTTPNRE---SLLGLTC 321 (427)
Q Consensus 247 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~---~~~~l~~ 321 (427)
++|.|+.+.++.+....+. .+..++..+++|+.|.|++ +.+.....+..+. +|++|.|..+..... .......
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~-~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLD-DMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCG-GGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCc-cchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4555666666555532211 2334456788899999987 5555222222233 788888744322110 1122346
Q ss_pred HHHhCCCccEEE
Q 014317 322 IMKACPFLQKLI 333 (427)
Q Consensus 322 ll~~~p~L~~L~ 333 (427)
++..+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 788899999875
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=86.11 E-value=0.18 Score=46.78 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=49.5
Q ss_pred ccCCcccceeeeee-ccccccchhhccccccCCCceEEEEeccceee--cccccCCCCceeEEEEEEEccCCCChHHHHH
Q 014317 245 IENVPQLVDVSIRG-SHTFRVTYFVGPIISCFPQLKTLELDSCNEVY--MQFSLFELPKLIDLRLRVTTPNRESLLGLTC 321 (427)
Q Consensus 245 ~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 321 (427)
+..+.+|+.|++.. +.. .......+..+++|+.|+|++ +.+. .+..+..+++|++|+|+.+.-.... ..
T Consensus 27 l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~ 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALESLS----WK 98 (347)
T ss_dssp SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCSCCC----ST
T ss_pred CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCccceeC----HH
Confidence 34455677777764 442 222233456888999999987 5555 3345677888888888544322110 11
Q ss_pred HHHhCCCccEEEEEecc
Q 014317 322 IMKACPFLQKLILQLND 338 (427)
Q Consensus 322 ll~~~p~L~~L~i~~~~ 338 (427)
++...+ |+.|.+..+.
T Consensus 99 ~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNP 114 (347)
T ss_dssp TTCSCC-CCEEECCSSC
T ss_pred HcccCC-ceEEEeeCCC
Confidence 223333 8888887653
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.89 E-value=0.15 Score=43.10 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=74.4
Q ss_pred hhhccccccCCCceEEEEeccceee------cccccCCCCceeEEEEEEEccCCCChHHHHHHHHhCCCccEEEEEeccC
Q 014317 266 YFVGPIISCFPQLKTLELDSCNEVY------MQFSLFELPKLIDLRLRVTTPNRESLLGLTCIMKACPFLQKLILQLNDH 339 (427)
Q Consensus 266 ~~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~ 339 (427)
..+..++..-+.|+.|.|+.+..+. +.+.+..-..|+.|+|+.+.-++.....+...|+.-..|++|+|+.+.-
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3455566777888888887532443 3444555567888888544444334455677788888899998875431
Q ss_pred CCCCCc--ccccCCCCccCCccEEEEec----eecCccHHHHHHHHHhccccccceEEEeec
Q 014317 340 GRRLGK--KRQQFPKYSHQHLKVVELHG----FLGRQFDVELAQYLFQNATMLEKLIIEPSR 395 (427)
Q Consensus 340 ~~~~~~--~~~~~~~~~~~~L~~v~i~~----f~g~~~e~~~~~~ll~~a~~L~~l~i~~~~ 395 (427)
.+ .|- .-.++. .-..|+++.+.+ ..|.+...++++.+-.| +.|.++.+....
T Consensus 111 g~-~Ga~ala~aL~--~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 111 TP-ELLARLLRSTL--VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp CH-HHHHHHHHHTT--TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred CH-HHHHHHHHHHh--hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 11 111 000011 234588888864 23555556677666544 568888876544
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.19 E-value=0.99 Score=42.54 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=53.9
Q ss_pred cccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCC-ChHHHHHHHHhCCCccEEEEEeccCCCCCCcccc
Q 014317 272 ISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRE-SLLGLTCIMKACPFLQKLILQLNDHGRRLGKKRQ 348 (427)
Q Consensus 272 ~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~ 348 (427)
+..+.+|+.+.+.. .+. +. ..+..+.+|+.+.|. ... ... ...+.+|.+|+++.|... ....+ ..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp----~~v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~--~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLP----YLVEEIG--KRSFRGCTSLSNINFPLS--LRKIG--AN 360 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCC----TTCCEEC--TTTTTTCTTCCEECCCTT--CCEEC--TT
T ss_pred cccccccccccccc--ccceechhhhcCCCCCCEEEeC----CcccEEh--HHhccCCCCCCEEEECcc--ccEeh--HH
Confidence 46788899988864 333 33 334667888888762 111 110 123468999999887421 11000 11
Q ss_pred cCCCCccCCccEEEEeceecCccHHHHHHHHHhccccccce
Q 014317 349 QFPKYSHQHLKVVELHGFLGRQFDVELAQYLFQNATMLEKL 389 (427)
Q Consensus 349 ~~~~~~~~~L~~v~i~~f~g~~~e~~~~~~ll~~a~~L~~l 389 (427)
++.. +.+|+.|.+..- +....+-+.+++.||.+
T Consensus 361 aF~~--C~~L~~i~lp~~------~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQG--CINLKKVELPKR------LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTT--CTTCCEEEEEGG------GGGGGGGBCTTCEEEEE
T ss_pred HhhC--CCCCCEEEECCC------CEEhhheecCCCCCcEE
Confidence 1222 357888887532 11122446778888765
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=78.51 E-value=0.25 Score=44.05 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=26.1
Q ss_pred CCCCCcEEEEeeEEeCh-hhHHHHHhcCCccceeeeccCC
Q 014317 158 GIKFLRCLHFKTVNVNG-KDIELFIQNCPLLDRLCVDHSK 196 (427)
Q Consensus 158 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~c~ 196 (427)
.+|+|++|+|++..+.+ ..+..++..+|+|+.|+|.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 46777777777777654 3444556677777777776653
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=72.84 E-value=6.2 Score=36.93 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCCCCCCcEEEEeeE--EeChhhHHHHHhcCCccceeeec
Q 014317 155 GLSGIKFLRCLHFKTV--NVNGKDIELFIQNCPLLDRLCVD 193 (427)
Q Consensus 155 ~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~ 193 (427)
.+..+..|+.+.+... .+.... +..|+.|+.+...
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYG 284 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEEC
T ss_pred cccccccceeEEcCCCcceeeccc----cccccccceeccC
Confidence 4556788888887642 233333 4457777776654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=65.11 E-value=3.4 Score=38.78 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=31.1
Q ss_pred eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceeecccccCCCCceeEEEE
Q 014317 244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVYMQFSLFELPKLIDLRL 306 (427)
Q Consensus 244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l 306 (427)
.+.+|..|+++.+... +...-...+.+|.+|+.+++.+ .... ...+..+.+|+.+.+
T Consensus 329 aF~~C~~L~~i~ip~s----v~~I~~~aF~~C~~L~~i~~~~-~~~~-~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS----VTKIPESAFSNCTALNNIEYSG-SRSQ-WNAISTDSGLQNLPV 385 (394)
T ss_dssp TTTTCTTCCEEEECTT----CCBCCGGGGTTCTTCCEEEESS-CHHH-HHTCBCCCCC-----
T ss_pred HhhCCCCCCEEEECcc----cCEEhHhHhhCCCCCCEEEECC-ceee-hhhhhccCCCCEEEe
Confidence 4567888888877421 1111223457899999999986 2221 233456677888776
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=64.44 E-value=3.8 Score=38.44 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=45.1
Q ss_pred eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChHHHHH
Q 014317 244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLLGLTC 321 (427)
Q Consensus 244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 321 (427)
.+.++..|+++.+... +...-...+.+|.+|+.+.|.. .+. +. ..+..|.+|+.+.+. +. .. ...
T Consensus 306 aF~~c~~L~~i~lp~~----v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~----~~--~~-~~~ 372 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG----ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS----GS--RS-QWN 372 (394)
T ss_dssp TTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES----SC--HH-HHH
T ss_pred eecCCCCcCEEEeCCc----ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC----Cc--ee-ehh
Confidence 4567788888877421 1111233457899999999974 343 33 345788999998872 22 11 122
Q ss_pred HHHhCCCccEEEEE
Q 014317 322 IMKACPFLQKLILQ 335 (427)
Q Consensus 322 ll~~~p~L~~L~i~ 335 (427)
-+..|.+|+.+.|.
T Consensus 373 ~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 373 AISTDSGLQNLPVA 386 (394)
T ss_dssp TCBCCCCC------
T ss_pred hhhccCCCCEEEeC
Confidence 34578999999885
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=56.87 E-value=4 Score=34.27 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=12.1
Q ss_pred hHHHHHhcCCccceeeeccC
Q 014317 176 DIELFIQNCPLLDRLCVDHS 195 (427)
Q Consensus 176 ~l~~ll~~cp~Le~L~l~~c 195 (427)
.+..++..-+.|++|+|.++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNM 51 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTC
T ss_pred HHHHHHhcCCCccEEECCCC
Confidence 45566666666666666543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=51.26 E-value=7.9 Score=35.85 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=44.5
Q ss_pred ccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEEEEEccCCCChHHHHHH
Q 014317 245 IENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRLRVTTPNRESLLGLTCI 322 (427)
Q Consensus 245 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 322 (427)
+.++..|+.+.+...- ...-...+..|.+|+.+.+.. ..+. +. ..+..+.+|+.+.|. ......+ ...
T Consensus 259 F~~~~~l~~i~l~~~i----~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp----~~l~~I~-~~a 328 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV----KTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP----TALKTIQ-VYA 328 (379)
T ss_dssp TTTCTTCCEEEECCCC----SEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC----TTCCEEC-TTT
T ss_pred cceeehhccccccccc----eeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcC----ccccEEH-HHH
Confidence 4556667776663211 111123346788888888875 3343 33 344667788887762 1110000 112
Q ss_pred HHhCCCccEEEEE
Q 014317 323 MKACPFLQKLILQ 335 (427)
Q Consensus 323 l~~~p~L~~L~i~ 335 (427)
+.+|.+|+++.|.
T Consensus 329 F~~C~~L~~i~ip 341 (379)
T 4h09_A 329 FKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCCCCCC
T ss_pred hhCCCCCCEEEEC
Confidence 4688999988773
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=37.41 E-value=20 Score=33.05 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=34.3
Q ss_pred eccCCcccceeeeeeccccccchhhccccccCCCceEEEEeccceee-cc-cccCCCCceeEEEE
Q 014317 244 NIENVPQLVDVSIRGSHTFRVTYFVGPIISCFPQLKTLELDSCNEVY-MQ-FSLFELPKLIDLRL 306 (427)
Q Consensus 244 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l 306 (427)
.+.++..|+++.+...... ..-...+.+|.+|+.++|.. .+. +. ..+..|.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~---~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE---TLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC---EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccc---eehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 3566777888777543321 11223346788888888863 233 32 23456677877765
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=30.09 E-value=33 Score=26.18 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=33.1
Q ss_pred cccCC-CceEEEEeccceee-ccc-ccCCCCceeEEEEEEEccCCC-ChHHHHHHHHhC
Q 014317 272 ISCFP-QLKTLELDSCNEVY-MQF-SLFELPKLIDLRLRVTTPNRE-SLLGLTCIMKAC 326 (427)
Q Consensus 272 ~~~~~-~l~~L~l~~~~~~~-~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l~~ll~~~ 326 (427)
...+| +++.|+|++ +.+. ++. .+..+++|+.|.|..+.-.+. ++.++...++..
T Consensus 26 P~~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 26 PTAFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp CSCCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred CCCCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 33444 688888887 6665 443 446677888888865433332 566666666543
Done!