BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014319
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UM3|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp4b
Length = 411
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 174 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 232
Query: 273 ANGWGEKHKLFVXXXXXXXXXXXXXXHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332
A + K + ++ HG L + G A+ +LQ A++ + +++
Sbjct: 233 A--YSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEAEKLYAKAEAL 287
Query: 333 CEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---P 387
C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 288 CKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTEAPQLELKA 346
Query: 388 DFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP WT E +
Sbjct: 347 NYGL-VEPIPFEFPPTSVQWTPETL 370
>pdb|3ULY|A Chain A, Crystal Structure Of Brox Bro1 Domain In Complex With The
C-Terminal Tails Of Chmp5
pdb|3UM0|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 410
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 173 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 231
Query: 273 ANGWGEKHKLFVXXXXXXXXXXXXXXHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332
A + K + ++ HG L + G A+ +LQ A++ + +++
Sbjct: 232 A--YSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEAEKLYAKAEAL 286
Query: 333 CEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---P 387
C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 287 CKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTEAPQLELKA 345
Query: 388 DFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP WT E +
Sbjct: 346 NYGL-VEPIPFEFPPTSVQWTPETL 369
>pdb|3ZXP|A Chain A, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|B Chain B, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
pdb|3ZXP|C Chain C, Structural And Functional Analyses Of The Bro1 Domain
Protein Brox
Length = 407
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 180 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 238
Query: 273 ANGWGEKHKLFVXXXXXXXXXXXXXXHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332
A + K + ++ HG L + G A+ +LQ A++ + +++
Sbjct: 239 A--YSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEAEKLYAKAEAL 293
Query: 333 CEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---P 387
C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 294 CKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTEAPQLELKA 352
Query: 388 DFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP WT E +
Sbjct: 353 NYGL-VEPIPFEFPPTSVQWTPETL 376
>pdb|3R9M|A Chain A, Crystal Structure Of The Brox Bro1 Domain
Length = 376
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 176 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 234
Query: 273 ANGWGEKHKLFVXXXXXXXXXXXXXXHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332
A + K + ++ HG L + G A+ +LQ A++ + +++
Sbjct: 235 A--YSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEAEKLYAKAEAL 289
Query: 333 CEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---P 387
C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 290 CKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTEAPQLELKA 348
Query: 388 DFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP WT E +
Sbjct: 349 NYGL-VEPIPFEFPPTSVQWTPETL 372
>pdb|3UM1|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM1|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|A Chain A, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
pdb|3UM2|D Chain D, Crystal Structure Of The Brox Bro1 Domain In Complex With
The C- Terminal Tail Of Chmp5
Length = 376
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 213 DLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPL 272
DL + A +Q + ++ + AI+ A + LA E ++Q+A + +L
Sbjct: 173 DLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQKADHTLSSLEP 231
Query: 273 ANGWGEKHKLFVXXXXXXXXXXXXXXHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332
A + K + ++ HG L + G A+ +LQ A++ + +++
Sbjct: 232 A--YSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEAEKLYAKAEAL 286
Query: 333 CEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---P 387
C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 287 CKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTEAPQLELKA 345
Query: 388 DFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP WT E +
Sbjct: 346 NYGL-VEPIPFEFPPTSVQWTPETL 369
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 309 EKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSR----NPPLWGTMKYLSEKIPKDTS 364
E +HG+ L A D YF +A A N + R P W + + I ++ S
Sbjct: 172 ELWHGLDWKLLSAKDTYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPS 231
Query: 365 SKVRINRD---LYSYEKIMETAPTLPDFALALKPD-------EFQLPPVHPSWTD 409
V +N + +Y+ + ++ T P L+++P+ EFQ PP+ P D
Sbjct: 232 KNVTVNCEDGTVYNADYVIITVPQ-SVLNLSVQPEKNLRGRIEFQ-PPLKPVIQD 284
>pdb|1EDG|A Chain A, Single Crystal Structure Determination Of The Catalytic
Domain Of Celcca Carried Out At 15 Degree C
Length = 380
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 28 VPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGS 87
+P L+IP+ +++ +N N V+ L A G IT + G
Sbjct: 7 IPNLQIPQ-----KNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIK 61
Query: 88 TLADLHQALEDY------LPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVL 141
T + A++ +PV GS YK+ VW+N+ E I N Y +L
Sbjct: 62 TTKQMIDAIKQKGFNTVRIPVSWHPHVSGSD--YKISDVWMNRVQEVVNYCIDNKMYVIL 119
Query: 142 SVLH 145
+ H
Sbjct: 120 NTHH 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,649,090
Number of Sequences: 62578
Number of extensions: 430011
Number of successful extensions: 1237
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 12
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)