BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014319
(427 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX OS=Rattus norvegicus GN=Brox
PE=2 SV=1
Length = 411
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 25/329 (7%)
Query: 90 ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
ADL+ +L +G S+L+Y F W + +A +A +E++S+ +A+
Sbjct: 61 ADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVAL 120
Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP-ELRR 208
A+ L G + +E++ + + A + H+ ++P E R
Sbjct: 121 WYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGR 173
Query: 209 ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIM 268
+L L D + QA Q V I + + +A LA E ++Q+A +
Sbjct: 174 DLEARLI--DAYIIQCQAEAQEVTIARAIELKHAPGLIAA---LAYETASFYQKADHTLS 228
Query: 269 NLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE 328
+L A+ + L +K ++ A AY YHG L + G A+ +LQ A++ + E
Sbjct: 229 SLEPAHSAKWRKYLHLKMCFY--TAYAYCYHGQTLLASDK---CGEAIRSLQEAEKLYAE 283
Query: 329 SKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL 386
++ C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 284 AEALCKEYGETKGPGPTAKPSGHLFFRKLGSLV-KNTLDKCQRENGFIYFQKIPTEAPQL 342
Query: 387 ---PDFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP+ WT E +
Sbjct: 343 ELKANYGL-VEPVPFEFPPMSALWTPEAL 370
>sp|Q5RDD7|BROX_PONAB BRO1 domain-containing protein BROX OS=Pongo abelii GN=BROX PE=2
SV=1
Length = 411
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 31/333 (9%)
Query: 92 LHQALEDYLPVLLGLVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
+ A + Y +L G + S+L+Y F W + +A +A +E++S+
Sbjct: 57 MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGF 116
Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP- 204
+A+ A+ L G + +E++ + + A + H+ ++P
Sbjct: 117 NVALWHTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLITPA 169
Query: 205 ELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ 264
E R+L L E A +Q + ++ + AI+ K + LA E ++Q+A
Sbjct: 170 EKGRDLESRLIE----AYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKAD 224
Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
+ +L A + L +K ++ A AY YHG L + G A+ +LQ A++
Sbjct: 225 HTLSSLEPAYSAKWRKYLHLKMCFY--TAYAYCYHGETLLASDK---CGEAIRSLQEAEK 279
Query: 325 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 382
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 280 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 338
Query: 383 APTL---PDFALALKPDEFQLPPVHPSWTDENM 412
AP L ++ L ++P F+ PP WT E +
Sbjct: 339 APQLELKANYGL-VEPIPFEFPPTSAQWTPETL 370
>sp|Q8K2Q7|BROX_MOUSE BRO1 domain-containing protein BROX OS=Mus musculus GN=Brox PE=2
SV=1
Length = 411
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 139/329 (42%), Gaps = 25/329 (7%)
Query: 90 ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
ADL+ +L +G S+L+Y F W + +A +A +E++S+ +A+
Sbjct: 61 ADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVAL 120
Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP-ELRR 208
A+ L G + +E++ + + A + H+ ++P E R
Sbjct: 121 WYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGR 173
Query: 209 ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIM 268
+L L D + QA Q V I + + +A LA + ++Q+A +
Sbjct: 174 DLEARLI--DAYIIQCQAEAQEVTIARAIELKHAPGLIAA---LAYDTASFYQKADHTLS 228
Query: 269 NLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE 328
+L A+ + L +K ++ A AY YHG L + G A+ +LQ A++ + E
Sbjct: 229 SLEPAHSAKWRKYLHLKMCFY--TAYAYCYHGQTLLASDK---CGEAIRSLQEAEKLYAE 283
Query: 329 SKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL 386
++ C+ + P + P + L + K+T K + ++KI AP L
Sbjct: 284 AEALCKEYGETKGPGPTAKPSGHLFFRKLGSLV-KNTLDKCQRENGFIYFQKIPTEAPQL 342
Query: 387 ---PDFALALKPDEFQLPPVHPSWTDENM 412
++ L ++P F+ PP+ WT E +
Sbjct: 343 ELKANYGL-VEPVPFEFPPMSAHWTPEAL 370
>sp|Q5VW32|BROX_HUMAN BRO1 domain-containing protein BROX OS=Homo sapiens GN=BROX PE=1
SV=1
Length = 411
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 31/333 (9%)
Query: 92 LHQALEDYLPVLLGLVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
+ A + Y +L G + S+L+Y F W + +A +A +E++S+
Sbjct: 57 MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGF 116
Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP- 204
+A+ A+ L G + +E++ + + A + H+ ++P
Sbjct: 117 NVALWYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPA 169
Query: 205 ELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ 264
E R+L L E A +Q + ++ + AI+ K + LA E ++Q+A
Sbjct: 170 EKGRDLESRLIE----AYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKAD 224
Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
+ +L A + L +K ++ A AY YHG L + G A+ +LQ A++
Sbjct: 225 HTLSSLEPAYSAKWRKYLHLKMCFY--TAYAYCYHGETLLASDK---CGEAIRSLQEAEK 279
Query: 325 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 382
+ +++ C+ + P + P + L + K+T K + ++KI
Sbjct: 280 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 338
Query: 383 APTL---PDFALALKPDEFQLPPVHPSWTDENM 412
AP L ++ L ++P F+ PP WT E +
Sbjct: 339 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 370
>sp|Q4X0Z5|BRO1_ASPFU Vacuolar protein-sorting protein bro1 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=bro1 PE=3 SV=1
Length = 976
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 29/211 (13%)
Query: 116 KVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE 175
K+ F W + + S A+ + + ++ A+LS AN Q + E
Sbjct: 88 KISFTWYDAFTHKPTSQYSLAYEKASIIFNISAVLSCHAAN------------QNRAEES 135
Query: 176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQL 235
+ + F +AG + L S +L RE ++ L L Q ++ L
Sbjct: 136 GLKTAYHSFQASAGMFTYINENFLHAPSTDLNRET--------VKTLINITLAQAQEVFL 187
Query: 236 GMAI-DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH-KLFVKWKYFEAKA 293
+ D KA K LA + + QA + I A G +K + V+ K +
Sbjct: 188 EKQVTDQKKAGFLAK--LASQAAYLYSQAAEGIQEY--AKGVFDKSWTIVVQAKAAHMAS 243
Query: 294 AAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
A YY L E N+ HG+A+A LQ AD+
Sbjct: 244 VASYYQALADSESNS---HGVAIARLQLADK 271
>sp|Q4IBS9|BRO1_GIBZE Vacuolar protein-sorting protein BRO1 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BRO1
PE=3 SV=1
Length = 995
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 34/235 (14%)
Query: 116 KVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE 175
K+ F W + S A+ + + ++ A+LS A Q + E
Sbjct: 88 KISFTWFDAFTHKSTAQYSLAFEKASIIFNISAVLSCHAA------------AQDRGEES 135
Query: 176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQL 235
+ + + F +AG + L S +L RE ++AL L Q ++ L
Sbjct: 136 ALKTAYHNFQASAGMFTYINENFLHAPSSDLSRET--------VKALIHVMLAQAQEVFL 187
Query: 236 GMAI-DSTKATLAVKRRLACEMVKYWQQA----QDNIMNLPLANGWGEKHKLFVKWKYFE 290
+ D K L K LA + + QA Q+N+ W L + K
Sbjct: 188 EKQVADKKKPALLAK--LASQAGYLYSQALEGVQENVTKAIFEKVW----LLMTQIKSNL 241
Query: 291 AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRN 345
+ A YY L +E + HG+AV LQ A+ KE+++ +F + P+S N
Sbjct: 242 LNSMAQYYQALADEEQDK---HGIAVGRLQTAETQAKEAERVARSFPNSVPMSSN 293
>sp|P26954|IL3B2_MOUSE Interleukin-3 receptor class 2 subunit beta OS=Mus musculus
GN=Csf2rb2 PE=2 SV=1
Length = 878
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 160 LPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQM-----SPELRRELPVDL 214
LP +G P + S D YL H LP + SP++ L L
Sbjct: 568 LPNVQVEGPIPSSRPRKQLPSFDF---NGPYLGPPQSHSLPDLPGQLGSPQVGGSLKPAL 624
Query: 215 AEGDLRALCL------------QALGQG--VDIQLGMAIDSTKA-TLAVKRRLACEMVKY 259
G L +CL Q +GQG +D+Q G ++++T + ++ K E+
Sbjct: 625 P-GSLEYMCLPPGGQVQLVPLSQVMGQGQAMDVQCGSSLETTGSPSVEPKENPPVELSVE 683
Query: 260 WQQAQDNIMNLPLANG 275
Q+A+DN M LP+++G
Sbjct: 684 KQEARDNPMTLPISSG 699
>sp|P26955|IL3RB_MOUSE Cytokine receptor common subunit beta OS=Mus musculus GN=Csf2rb
PE=1 SV=2
Length = 896
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 38/165 (23%)
Query: 147 MAMLSLSQANLLLLPRTSADGYQPKVSEESR----------------RASVDIFLKAAGY 190
++ L++ N++ +P + D P S ES R + F Y
Sbjct: 537 VSPLTIEDPNIIRVPPSGPDT-TPAASSESTEQLPNVQVEGPTPNRPRKQLPSFDFNGPY 595
Query: 191 LDCAVRHVLPQM-----SPELRRELPVDLAEGDLRALCL------------QALGQG--V 231
L H LP + SP++ L L G L +CL Q +GQG +
Sbjct: 596 LGPPQSHSLPDLPDQLGSPQVGGSLKPALP-GSLEYMCLPPGGQAQLVPLSQVMGQGQAM 654
Query: 232 DIQLGMAIDSTKA-TLAVKRRLACEMVKYWQQAQDNIMNLPLANG 275
D+Q G +++++ + ++ K E+ Q+A+DN + LP+++G
Sbjct: 655 DVQCGSSLETSGSPSVEPKENPPVELSMEEQEARDNPVTLPISSG 699
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 249 KRRLACEMVKYWQQAQ-DNIMN--------LPLANGWGEKHKLFVKWKYFEAKAAAYYYH 299
KR + M+ Y+++++ D+I++ + N E+H++ V+ K E + Y
Sbjct: 532 KRFMNAYMLVYFRKSRLDHILSPVTAEDVPFHVRNTLDEEHRV-VERKLLEREEQQIYRR 590
Query: 300 GLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKI 359
+L +K+HG + A+D+ + + + RN +W K+L+ +
Sbjct: 591 VRVLTTDGFKKYHGFDMTDFSASDD---------DPVLITTKIKRNANIWDLQKHLAGLL 641
Query: 360 PKDTSSKVRI 369
+DTS +RI
Sbjct: 642 NRDTSG-IRI 650
>sp|B2FQ39|RPOC_STRMK DNA-directed RNA polymerase subunit beta' OS=Stenotrophomonas
maltophilia (strain K279a) GN=rpoC PE=3 SV=1
Length = 1406
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L +A G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q7SAN9|BRO1_NEUCR Vacuolar protein-sorting protein bro-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=bro-1 PE=3 SV=1
Length = 1012
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 34/235 (14%)
Query: 116 KVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE 175
K+ F W + S A+ + + ++ A+LS A+ L RT G K +
Sbjct: 88 KISFTWFDAFTHKPTAQYSLAFEKASIIFNISAVLSCHAAHQL---RTEEAGL--KTAYH 142
Query: 176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQL 235
S +AS +F Y++ H S +L RE ++ L L Q ++ L
Sbjct: 143 SFQASAGMFT----YINENFLHA---PSSDLSRET--------VKTLISIMLAQAQEVFL 187
Query: 236 GMAI-DSTKATLAVKRRLACEMVKYWQQA----QDNIMNLPLANGWGEKHKLFVKWKYFE 290
I D K L K L+ + + QA Q+N+ W V+ K
Sbjct: 188 EKQIADQKKNGLLAK--LSSQAAALYAQAVEGVQENVTKAIFEKVWLS----VVQIKLNF 241
Query: 291 AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRN 345
+ A YY L ++ N+ +G+A+A L+ A KE+ K +F + P + N
Sbjct: 242 MNSLAQYYQALADEDANS---YGVAIARLEIAQGLAKEANKMAHSFPTSVPPNSN 293
>sp|Q874P0|MTAL1_CANGA Mating-type-like protein ALPHA1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MTL1ALPHA1 PE=2 SV=1
Length = 191
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 351 TMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALAL---KPDEFQLPPVHP 405
TMKY + K T+ ++R + + + + T F L + KP++FQ+PP HP
Sbjct: 7 TMKYTATKFRVRTNKRLRSQKYPEKHSDFLGCSSTKSSFGLNMLLTKPNKFQIPPPHP 64
>sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain 9a5c) GN=rpoC PE=3 SV=2
Length = 1407
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + T + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDATMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
++ L + ++ + +++ G + K+ ++R ++ F+++ + + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|A9M5Q8|RPOC_BRUC2 DNA-directed RNA polymerase subunit beta' OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|B0CH40|RPOC_BRUSI DNA-directed RNA polymerase subunit beta' OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q8G070|RPOC_BRUSU DNA-directed RNA polymerase subunit beta' OS=Brucella suis biovar 1
(strain 1330) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|C0RJK9|RPOC_BRUMB DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q8YHP7|RPOC_BRUME DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rpoC
PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|A5VR14|RPOC_BRUO2 DNA-directed RNA polymerase subunit beta' OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=rpoC PE=3 SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q3BWZ0|RPOC_XANC5 DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=rpoC PE=3 SV=1
Length = 1404
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q8PNS9|RPOC_XANAC DNA-directed RNA polymerase subunit beta' OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=rpoC PE=3 SV=1
Length = 1404
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|A6X0B0|RPOC_OCHA4 DNA-directed RNA polymerase subunit beta' OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpoC PE=3
SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q8KTH8|RPOC_XANOR DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=rpoC PE=3 SV=2
Length = 1405
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|B2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=rpoC PE=3 SV=1
Length = 1405
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q2NZX9|RPOC_XANOM DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=rpoC PE=3 SV=1
Length = 1405
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q8PC55|RPOC_XANCP DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpoC PE=3 SV=1
Length = 1405
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|B0RU88|RPOC_XANCB DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain B100) GN=rpoC PE=3 SV=1
Length = 1405
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q4URD3|RPOC_XANC8 DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=rpoC PE=3 SV=1
Length = 1405
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
+ L + ++ L ++ G + K+ ++R ++ FL++ + V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q6C1E4|PALC_YARLI pH-response regulator protein palC OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YALI0F17028g PE=3 SV=1
Length = 441
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 31/212 (14%)
Query: 27 YVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGG 86
Y L P+ +Q + + + ++E A R R+ + ++ AT+ G
Sbjct: 5 YTGQLPTTSPLSLTQLITSDRYQQVIENADAARARV-------REQLKHAKKTGATEANG 57
Query: 87 STLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV------WVNQEDEAEETAISNAWYEV 140
+ + +ALE+Y+P + +V + ++ Q + + +Q A +T + +E
Sbjct: 58 DIMPVI-KALEEYMPHITSIVDNEGVFRFTSQIITCWRLPFQSQSSMANKTPLHGLSFEY 116
Query: 141 LSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD----CAVR 196
+ VL A L+L+ T A+ Y + E+ + + KA G +D C
Sbjct: 117 IMVLFTYA-LALA---------TLANQYVARDKEDRWKHASAYISKARGVVDYLRQCRSF 166
Query: 197 HVLPQMSPELRRELPVDLAEGDLRALCLQALG 228
++ P +P DL+ + AL G
Sbjct: 167 QIICNEPPA---SVPRDLSSATMSALSHMLCG 195
>sp|Q57CP9|RPOC_BRUAB DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
biovar 1 (strain 9-941) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERILYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q2YM16|RPOC_BRUA2 DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
(strain 2308) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERILYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|B2S686|RPOC_BRUA1 DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
(strain S19) GN=rpoC PE=3 SV=1
Length = 1400
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERILYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTALIGAEAIYELL 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ + L + + + +L T++D Q K+ + R V+ FL++ + + ++P
Sbjct: 192 ASMELEKIAADLRVDL---AETTSDLKQKKLMK--RLKIVENFLESGNRPEWMIMKIVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q7MX26|RPOC_PORGI DNA-directed RNA polymerase subunit beta' OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=rpoC PE=3 SV=1
Length = 1433
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 97 EDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYE------------VLSVL 144
E Y+ + G+ + SQL + ++++ DE E T N E ++
Sbjct: 138 ERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIY 197
Query: 145 HLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDC---AVRHVLPQ 201
L+ + L + L R + DG Q + +E +R V +A+ ++ V V+P
Sbjct: 198 DLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPV 257
Query: 202 MSPELRRELPVD---LAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMV 257
+ P+LR +P+D A DL L + + + ++ + I + + L ++R+ E V
Sbjct: 258 IPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQEAV 316
>sp|B2RL44|RPOC_PORG3 DNA-directed RNA polymerase subunit beta' OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=rpoC PE=3 SV=1
Length = 1433
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 18/179 (10%)
Query: 97 EDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYE------------VLSVL 144
E Y+ + G+ + SQL + ++++ DE E T N E ++
Sbjct: 138 ERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIY 197
Query: 145 HLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDC---AVRHVLPQ 201
L+ + L + L R + DG Q + +E +R V +A+ ++ V V+P
Sbjct: 198 DLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPV 257
Query: 202 MSPELRRELPVD---LAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMV 257
+ P+LR +P+D A DL L + + + ++ + I + + L ++R+ E V
Sbjct: 258 IPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQEAV 316
>sp|A6U852|RPOC_SINMW DNA-directed RNA polymerase subunit beta' OS=Sinorhizobium medicae
(strain WSM419) GN=rpoC PE=3 SV=1
Length = 1401
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEML 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ ++L + ++ + T++D Q K+ + R V+ F+++ + + V+P
Sbjct: 192 ASMNLEKIAGDLRSEM---AETTSDLKQKKLMK--RLKIVENFMESGNRPEWMIMKVVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q92QH6|RPOC_RHIME DNA-directed RNA polymerase subunit beta' OS=Rhizobium meliloti
(strain 1021) GN=rpoC PE=3 SV=1
Length = 1401
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K+ L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEML 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ ++L + ++ + T++D Q K+ + R V+ F+++ + + V+P
Sbjct: 192 ASMNLEKIAGDLRSEM---AETTSDLKQKKLMK--RLKIVENFMESGNRPEWMIMKVVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|Q8UE09|RPOC_AGRT5 DNA-directed RNA polymerase subunit beta' OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=rpoC PE=3 SV=2
Length = 1402
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 88 TLADLHQAL--EDYLPVLLGL--VKDGSQLQYKVQFVWVNQEDEAEETAI--SNAWYEVL 141
TL D+ + L E+Y+ GL +K L + + V++ E + TA+ + A YE+L
Sbjct: 132 TLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTAMIGAEAIYEML 191
Query: 142 SVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQ 201
+ ++L + +A L T++D Q K + R V+ F+++ + + V+P
Sbjct: 192 ASMNLEKIAGDLRAEL---AETTSDLKQKKFMK--RLKIVENFMESGNRPEWMIMKVVPV 246
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 247 IPPDLRPLVPLDGGRFATSDLNDL 270
>sp|B0U5X6|RPOC_XYLFM DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain M12) GN=rpoC PE=3 SV=1
Length = 1411
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
++ L + ++ + +++ G + K+ ++R ++ F+++ + + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|Q87A33|RPOC_XYLFT DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=rpoC PE=3 SV=1
Length = 1407
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
++ L + ++ + +++ G + K+ ++R ++ F+++ + + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
>sp|B2IA67|RPOC_XYLF2 DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain M23) GN=rpoC PE=3 SV=1
Length = 1407
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 88 TLADLHQAL--EDYLPVLLGLVK-DGSQLQYKVQFVWVNQE--DEAEETAISNAWYEVLS 142
TL D+ + L E Y+ GL + QL + Q++ QE D+ + + + A YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLR 190
Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS-VDIFLKAAGYLDCAVRHVLPQ 201
++ L + ++ + +++ G + K+ ++R ++ F+++ + + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 202 MSPELRRELPVD---LAEGDLRAL 222
+ P+LR +P+D A DL L
Sbjct: 245 LPPDLRPLVPLDGGRFATSDLNDL 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,629,598
Number of Sequences: 539616
Number of extensions: 6184962
Number of successful extensions: 18152
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 18150
Number of HSP's gapped (non-prelim): 58
length of query: 427
length of database: 191,569,459
effective HSP length: 120
effective length of query: 307
effective length of database: 126,815,539
effective search space: 38932370473
effective search space used: 38932370473
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)