Query 014319
Match_columns 427
No_of_seqs 169 out of 500
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9m_A BRO1 domain-containing 100.0 1.5E-67 5.1E-72 536.1 34.5 344 28-412 10-372 (376)
2 3c3r_A Programmed cell death 6 100.0 6.7E-65 2.3E-69 517.3 31.6 324 20-408 21-373 (380)
3 3rau_A Tyrosine-protein phosph 100.0 6.9E-66 2.3E-70 521.3 20.3 327 25-400 11-348 (363)
4 2xs1_A Programmed cell death 6 100.0 5.3E-60 1.8E-64 515.2 28.6 330 25-408 10-358 (704)
5 1zb1_A BRO1 protein; AIP1, BRO 100.0 5.7E-61 1.9E-65 490.5 18.6 324 24-400 9-351 (392)
6 4gcn_A Protein STI-1; structur 82.7 12 0.00043 29.8 10.6 30 292-324 82-111 (127)
7 3q15_A PSP28, response regulat 76.3 20 0.00068 34.1 11.4 35 138-192 138-172 (378)
8 3rkv_A Putative peptidylprolyl 73.5 12 0.0004 30.8 7.9 29 294-325 98-126 (162)
9 3ulq_A Response regulator aspa 72.1 30 0.001 32.7 11.6 36 137-192 139-174 (383)
10 2crb_A Nuclear receptor bindin 69.8 3.2 0.00011 33.0 3.1 35 295-332 17-51 (97)
11 3u3w_A Transcriptional activat 68.7 27 0.00091 31.9 10.0 34 138-191 152-185 (293)
12 2w2u_A Hypothetical P60 katani 65.3 15 0.00051 28.3 6.1 39 291-332 17-55 (83)
13 3vtx_A MAMA; tetratricopeptide 58.8 74 0.0025 26.0 10.9 30 139-188 3-32 (184)
14 3gw4_A Uncharacterized protein 57.1 81 0.0028 25.9 13.0 33 293-328 147-179 (203)
15 4a5x_A MITD1, MIT domain-conta 55.8 35 0.0012 26.3 6.8 38 291-331 14-51 (86)
16 1wfd_A Hypothetical protein 15 55.7 34 0.0012 26.8 6.8 41 289-332 11-51 (93)
17 2qfc_A PLCR protein; TPR, HTH, 52.2 62 0.0021 29.3 9.3 34 139-192 153-186 (293)
18 2cpt_A SKD1 protein, vacuolar 51.5 31 0.0011 28.3 6.2 40 290-332 15-54 (117)
19 3gyz_A Chaperone protein IPGC; 51.1 81 0.0028 26.1 9.1 96 212-325 29-133 (151)
20 2v6y_A AAA family ATPase, P60 49.6 23 0.0008 27.1 4.8 39 291-332 9-47 (83)
21 4gyw_A UDP-N-acetylglucosamine 44.0 2.1E+02 0.007 30.6 12.9 29 140-188 8-36 (723)
22 3ro3_A PINS homolog, G-protein 40.9 1.2E+02 0.0041 23.2 11.7 34 138-191 46-79 (164)
23 3ro3_A PINS homolog, G-protein 40.7 1.2E+02 0.0041 23.2 12.5 35 138-192 6-40 (164)
24 1ihg_A Cyclophilin 40; ppiase 40.5 61 0.0021 31.3 7.5 39 136-194 218-256 (370)
25 2ifu_A Gamma-SNAP; membrane fu 39.7 2.1E+02 0.0072 26.0 10.9 34 138-191 73-106 (307)
26 1qqe_A Vesicular transport pro 38.0 2.2E+02 0.0077 25.5 10.8 34 139-192 75-108 (292)
27 2v6x_A Vacuolar protein sortin 35.2 53 0.0018 25.0 4.8 38 292-332 12-49 (85)
28 4i17_A Hypothetical protein; T 30.9 2.4E+02 0.0082 23.7 10.6 12 177-188 23-34 (228)
29 4a1s_A PINS, partner of inscut 30.1 3.3E+02 0.011 25.1 13.7 35 292-329 262-296 (411)
30 4g1t_A Interferon-induced prot 29.7 3E+02 0.01 26.1 10.5 33 141-193 51-83 (472)
31 1p5q_A FKBP52, FK506-binding p 29.3 1.3E+02 0.0044 28.2 7.6 115 139-325 145-259 (336)
32 4abn_A Tetratricopeptide repea 28.8 4.2E+02 0.014 25.9 13.0 12 177-188 153-164 (474)
33 3gw4_A Uncharacterized protein 28.0 2.4E+02 0.0082 22.8 11.2 33 140-192 25-57 (203)
34 3ulq_A Response regulator aspa 26.8 3.8E+02 0.013 24.7 11.3 15 177-191 200-214 (383)
35 3q15_A PSP28, response regulat 26.1 3.9E+02 0.013 24.7 11.0 15 177-191 198-212 (378)
36 3edt_B KLC 2, kinesin light ch 25.8 3E+02 0.01 23.3 10.4 31 294-327 170-200 (283)
37 3qwp_A SET and MYND domain-con 23.9 3.9E+02 0.013 26.3 10.2 34 293-329 371-404 (429)
38 4a1s_A PINS, partner of inscut 23.5 4.3E+02 0.015 24.2 13.2 34 139-192 84-117 (411)
39 1kt0_A FKBP51, 51 kDa FK506-bi 23.3 1.3E+02 0.0046 29.6 6.7 118 136-325 263-380 (457)
40 3qww_A SET and MYND domain-con 23.3 3.4E+02 0.012 26.8 9.7 34 293-329 382-415 (433)
No 1
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=100.00 E-value=1.5e-67 Score=536.14 Aligned_cols=344 Identities=23% Similarity=0.386 Sum_probs=291.5
Q ss_pred cCCCCCCCCcccchHHh--hHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014319 28 VPGLRIPKPVDFSQSLG--DNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105 (427)
Q Consensus 28 ~p~lk~t~~vd~~~~l~--~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~ 105 (427)
=| ||.|+.|+|...+. +-.....+.+++..|+++.+.. .++ ..+++.+++++++||++|.+
T Consensus 10 ~~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~---------------~~~-~~~~~~~~~~l~~Yl~~L~~ 72 (376)
T 3r9m_A 10 NP-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF---------------TDL-SCNPEMMKNAADSYFSLLQG 72 (376)
T ss_dssp CC-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHT---------------TCT-TCCHHHHHHHHHHHHHHHGG
T ss_pred CC-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHH---------------hcC-CCCHHHHHHHHHHHHHHHHH
Confidence 36 99999999975442 2345578899999999998887 556 56778889999999999999
Q ss_pred ccCC------CCCccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHH
Q 014319 106 LVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRA 179 (427)
Q Consensus 106 l~~~------~~~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~ 179 (427)
|..+ +.+++.+|.|+|+|+|+++.+++++|+.||++|||||||++|+++|+.... .++.++||+|.
T Consensus 73 l~~~~~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~--------~~r~~~e~lK~ 144 (376)
T 3r9m_A 73 FINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAG--------KENITEDEAKE 144 (376)
T ss_dssp GTBCSSCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHT--------CTTCCHHHHHH
T ss_pred HHhccccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHhhc--------cccCChHHHHH
Confidence 8643 234557899999999997789999999999999999999999999984321 35678999999
Q ss_pred HHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH
Q 014319 180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKY 259 (427)
Q Consensus 180 A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~ 259 (427)
|+++||+|||||+||++++++.+.+ ...+++||++++|.+|+.+||||||||+|+||+. +++++++|||||.|++++
T Consensus 145 A~~~fq~AAG~f~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAKLa~q~~~~ 221 (376)
T 3r9m_A 145 VHRSLKIAAGIFKHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANF 221 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH
Confidence 9999999999999999998876532 1234589999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcccccccch-hHHHHH-----HHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 014319 260 WQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAK-----AAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKAC 333 (427)
Q Consensus 260 Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~k-----A~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~ 333 (427)
|++|.+.+++... .++.+| +++++| |+||||+|+++.+ +++|||+|+||+.|.+.++++.+.+
T Consensus 222 Y~~a~~~l~~~~~--------~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~ 290 (376)
T 3r9m_A 222 YQKADHTLSSLEP--------AYSAKWRKYLHLKMCFYTAYAYCYHGETLLA---SDKCGEAIRSLQEAEKLYAKAEALC 290 (376)
T ss_dssp HHHHHHHHTTSCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986432 477889 888776 7999999999999 9999999999999999999999999
Q ss_pred hhcccCCC--CCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCCCCCCC---CCCccccccccCCCCCCCCCCC
Q 014319 334 EAFNVAPP--LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---PDFALALKPDEFQLPPVHPSWT 408 (427)
Q Consensus 334 ~~~~~~~~--~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~~lp~l---~~~~l~vkp~~f~lP~~~~~w~ 408 (427)
++|....+ .+..++....++.+.+.|+ +.++++++|||+||||+||+++|.+ |+++| |||+||++|++++.|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~l~~a~kdNd~IY~~~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~ 368 (376)
T 3r9m_A 291 KEYGETKGPGPTVKPSGHLFFRKLGNLVK-NTLEKCQRENGFIYFQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWT 368 (376)
T ss_dssp HHHHTCCCSSCCCCGGGSHHHHHHHHHHH-HHHHHHHHHHHHTTCCCCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCC
T ss_pred HHhccccCCccccccchhhHHHHHHHHHH-HHHHHHHhhccceecccCCCCCCCcccccccce-ecCcCCCCCCCChhhh
Confidence 99886543 2333332234556666674 7899999999999999999877766 56889 9999999999999999
Q ss_pred Cccc
Q 014319 409 DENM 412 (427)
Q Consensus 409 ~~~~ 412 (427)
++.|
T Consensus 369 ~~~~ 372 (376)
T 3r9m_A 369 PETL 372 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 2
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=100.00 E-value=6.7e-65 Score=517.30 Aligned_cols=324 Identities=21% Similarity=0.245 Sum_probs=270.5
Q ss_pred CcCcEEEecCCCCCCCCcccchHHhhHHHHHH-------------HHHHHHHHHHHHHHhhhcCCccccccccccccCCC
Q 014319 20 NIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNM-------------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGG 86 (427)
Q Consensus 20 ~~~~~~~~~p~lk~t~~vd~~~~l~~~I~~~~-------------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~ 86 (427)
.|.. ++.+| ||+|++|||..+|++||.++| +++++.+|++++... + +.+
T Consensus 21 ~m~~-~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~---------~-----~~~-- 82 (380)
T 3c3r_A 21 HMAT-FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP---------L-----DKH-- 82 (380)
T ss_dssp --CC-CCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSS---------C-----CCS--
T ss_pred hhcc-ccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcC---------C-----CcC--
Confidence 3443 77788 999999999999999999886 457778888765432 0 111
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCC--CccceeeEEeeeCCC------CCcceeecchHHHHHHHHHHHHHHHHHHHHhh
Q 014319 87 STLADLHQALEDYLPVLLGLVKDGS--QLQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLL 158 (427)
Q Consensus 87 s~~~~l~~~l~~Y~~~L~~l~~~~~--~~~~~v~F~W~dsl~------~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~ 158 (427)
+..++.|.+||++|..+..+.+ ..+.+|.|+|+|+|+ |+.+++++|+.||++|||||+|++|+++|+
T Consensus 83 ---~~~~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal~s~~A~-- 157 (380)
T 3c3r_A 83 ---EGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAA-- 157 (380)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ---hHHHHHHHHHHHHHHHHHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHH--
Confidence 3446789999999998754432 234689999999996 446899999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHh
Q 014319 159 LLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMA 238 (427)
Q Consensus 159 ~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KA 238 (427)
.++|.+++|+|.||++||+|||||+||++++++.++. .+|+||++++|.+|+.+||||||||+|+||
T Consensus 158 ---------~~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Ka 224 (380)
T 3c3r_A 158 ---------EQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKA 224 (380)
T ss_dssp ---------TSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HhcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2578899999999999999999999999998765432 345899999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhH
Q 014319 239 IDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFH 312 (427)
Q Consensus 239 i~~~k~k~sliAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~ 312 (427)
+. +++++++|||||.|++++|++|.+.++..+ .+..+| +++ .++|+||||+|+++.+ +++|
T Consensus 225 i~-~~~k~~liAkLa~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~ 291 (380)
T 3c3r_A 225 TR-DKMKDAIIAKLANQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QKKF 291 (380)
T ss_dssp HH-TTCCHHHHHHHHHHHHHHHHHHHHHHTTCC---------CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCH
T ss_pred Hh-cCCChhHHHHHHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccH
Confidence 99 888999999999999999999999998222 244567 554 4577999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCc
Q 014319 313 GMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFA 390 (427)
Q Consensus 313 GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~ 390 (427)
|++||||+.|.+.++++.+.++.+. + ++.+.++|+ +.++++++|||+||||+||+ +||+|+++.
T Consensus 292 GeaIa~L~~A~~~l~~a~~~~~~~~---------~----l~~l~~~i~-~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~ 357 (380)
T 3c3r_A 292 GEEIARLQHAAELIKTVASRYDEYV---------N----VKDFSDKIN-RALAAAKKDNDFIYHDRVPDLKDLDPIGKAT 357 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTC---------C----CHHHHHHHH-HHHHHHHHHHHHTTCCCCCCGGGSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchH---------h----HHHHHHHHH-HHHHHHHHhhCeecccCCCCcccCCCCCCCc
Confidence 9999999999999999998876442 1 235566665 67888999999999999994 799999999
Q ss_pred cccccccCCCCCCCCCCC
Q 014319 391 LALKPDEFQLPPVHPSWT 408 (427)
Q Consensus 391 l~vkp~~f~lP~~~~~w~ 408 (427)
| |||+||++|. ++.|+
T Consensus 358 l-vk~~~~~~p~-~~~~~ 373 (380)
T 3c3r_A 358 L-VKSTPVNVPI-SQKFT 373 (380)
T ss_dssp C-CCCCCCCSCC-SSSCC
T ss_pred e-ecccCCCCCC-ccchh
Confidence 9 9999999996 88886
No 3
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.9e-66 Score=521.33 Aligned_cols=327 Identities=19% Similarity=0.205 Sum_probs=265.6
Q ss_pred EEecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319 25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL 104 (427)
Q Consensus 25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~ 104 (427)
.+.+| ||+|++|||..||++||.++|.++.+.++++|..+. ++|+.++++.| + ....+.|.+||.+|.
T Consensus 11 mi~l~-lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~-~LR~~~~~~~~---------~-~~g~~~L~~Yy~qL~ 78 (363)
T 3rau_A 11 MIWLD-LKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLE-LLRQNAVRVPR---------D-FEGCSVLRKYLGQLH 78 (363)
T ss_dssp CCCCC-CCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHH-HHHHHHHTCCS---------S-HHHHHHHHHHHHHHH
T ss_pred ccCCC-CCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhccCCC---------C-HHHHHHHHHHHHHHH
Confidence 34556 999999999999999999998655455555544443 44444444332 1 123468999999998
Q ss_pred cccCCCC---CccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHH
Q 014319 105 GLVKDGS---QLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASV 181 (427)
Q Consensus 105 ~l~~~~~---~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~ 181 (427)
.+..+++ ....+|.|+|+|+|++ ++++++|+.||++|||||||++|+++|++ ++|.+++|+|.||
T Consensus 79 ~l~~rfp~~~~~~~~i~F~W~ds~~~-~~~~~~sl~fE~a~VLfNiaal~s~~a~~-----------~~r~~~~glK~A~ 146 (363)
T 3rau_A 79 YLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGALHSMLGAM-----------DKRVSEEGMKVSC 146 (363)
T ss_dssp HHHHHSCCSTTCTTCCCEEEECTTTC-CEEEESCHHHHHHHHHHHHHHHHHHHHHH-----------SCCCSHHHHHHHH
T ss_pred HHHhcCCCCcccccceeEEeecccCC-ccccccCHHHHHHHHHHHHHHHHHHHHHH-----------hccCChHHHHHHH
Confidence 8643221 1135899999999988 68999999999999999999999999982 5788999999999
Q ss_pred HHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 014319 182 DIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQ 261 (427)
Q Consensus 182 ~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~ 261 (427)
++||+|||||+||++++.+ .| |+||++++|.+|+.+||||||||+|+||+. +++++++|||||.|++++|+
T Consensus 147 ~~fq~AAG~f~~l~~~~~~-~~-------~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAkLa~q~~~~Y~ 217 (363)
T 3rau_A 147 THFQCAAGAFAYLREHFPQ-AY-------SVDMSRQILTLNVNLMLGQAQECLLEKSML-DNRKSFLVARISAQVVDYYK 217 (363)
T ss_dssp HHHHHHHHHHHHHHHHCCS-CS-------SGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CC-------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999743 23 379999999999999999999999999999 78899999999999999999
Q ss_pred HHHHHHhcCCCCCCCCcccccccch-hHHH-----HHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014319 262 QAQDNIMNLPLANGWGEKHKLFVKW-KYFE-----AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEA 335 (427)
Q Consensus 262 ~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~-----~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~ 335 (427)
+|.+.+++.+....+ ..++.+| ++++ ++|+||||+|+++.+ +++||++|+||+.|.+.++++.+.++.
T Consensus 218 ~a~~~l~~~~~~~~~---~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~k~ 291 (363)
T 3rau_A 218 EACRALENPDTASLL---GRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEE---QQKFGERVAYFQSALDKLNEAIKLAKG 291 (363)
T ss_dssp HHHHHHTCHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCcccccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999865421100 1255677 5554 467999999999999 999999999999999999999998763
Q ss_pred cccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCC
Q 014319 336 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL 400 (427)
Q Consensus 336 ~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~l 400 (427)
+ ...+.+.++.+.+.|+ +.++++++||||||||+||+ +||+|++..| |||+||+.
T Consensus 292 ~--------~~~~~~~~~~~~~~i~-~~l~~aekdNd~IY~~~VP~~~~L~~i~~~~l-vk~~p~~~ 348 (363)
T 3rau_A 292 Q--------PDTVQDALRFTMDVIG-GKYNSAKKDNDFIYHEAVPALDTLQPVKGAPL-VKPLPVNP 348 (363)
T ss_dssp C--------CHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCCCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred C--------chhHHHHHHHHHHHHH-HHHHHHHhccCcCCcccCCCccccCCCCCCcc-ccCCCCCc
Confidence 1 1124455556666675 68999999999999999997 7999999999 99999885
No 4
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=100.00 E-value=5.3e-60 Score=515.17 Aligned_cols=330 Identities=18% Similarity=0.215 Sum_probs=268.6
Q ss_pred EEecCCCCCCCCcccchHHhhHHHHHHH---HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHH
Q 014319 25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV---ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLP 101 (427)
Q Consensus 25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~---~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~ 101 (427)
++.+| ||+|++|||..||++||.++|. ++...+++++..+. ++|+.+... .. ..+ +...+.|.+||+
T Consensus 10 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~-~lR~~~~~~------~~-~~~-~~~~~~L~~Y~~ 79 (704)
T 2xs1_A 10 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELS-KLRRAAVGR------PL-DKH-EGALETLLRYYD 79 (704)
T ss_dssp CCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH-HHHHHHHTS------CC-CCC-HHHHHHHHHHHH
T ss_pred hhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHH-HHHHHHhhC------CC-CCC-HHHHHHHHHHHH
Confidence 78888 9999999999999999999876 55555555555444 222221110 01 111 345678999999
Q ss_pred HHhcccCCCC--CccceeeEEeeeCCC------CCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 014319 102 VLLGLVKDGS--QLQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVS 173 (427)
Q Consensus 102 ~L~~l~~~~~--~~~~~v~F~W~dsl~------~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t 173 (427)
+|..+..+.+ ..+.+|.|+|+|+|+ |+.+++++|+.||++|||||+|++|+++|+ .+++.+
T Consensus 80 ~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~-----------~~~r~~ 148 (704)
T 2xs1_A 80 QICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAA-----------EQNLDN 148 (704)
T ss_dssp HHHHHGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHHHHHHHH-----------TSCTTS
T ss_pred HHHHHHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHH-----------HhCCCC
Confidence 9998754322 224689999999996 346889999999999999999999999998 257788
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHH
Q 014319 174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLA 253 (427)
Q Consensus 174 ~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA 253 (427)
++|+|.||++||+|||||+||++++++.++. .+|+||++++|.+|+.+||||||||+|+||+. +++++++|||||
T Consensus 149 ~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAkLa 223 (704)
T 2xs1_A 149 DEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DKMKDAIIAKLA 223 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHH
Confidence 9999999999999999999999998765432 34589999999999999999999999999999 888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHH
Q 014319 254 CEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFK 327 (427)
Q Consensus 254 ~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~ 327 (427)
.+++++|++|.+.+...+ .++.+| +++ +++|+||||+|+++.+ +++||++||||+.|.++++
T Consensus 224 ~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~ 291 (704)
T 2xs1_A 224 NQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QYYFGEEIARLQHAAELIK 291 (704)
T ss_dssp HHHHHHHHHHHHHHHTCC---------CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HhHHHHHHHHHHHHHHHHH
Confidence 999999999999998211 244456 444 5577999999999999 9999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCCCCCCC
Q 014319 328 ESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQLPPVHP 405 (427)
Q Consensus 328 ~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~lP~~~~ 405 (427)
++.+.++.+. . ++.+.+.|+ ..+++++++||+||||+||+ +||+|+++.| |||+||+.| .++
T Consensus 292 ~a~~~~~~~~---------~----~~~l~~~i~-~~l~~~~kdNd~IY~e~VP~~~~L~~i~~~~l-vk~~~~~~p-~~~ 355 (704)
T 2xs1_A 292 TVASRYDEYV---------N----VKDFSDKIN-RALAAAKKDNDFIYHDRVPDLKDLDPIGKATL-VKSTPVNVP-ISQ 355 (704)
T ss_dssp HHHHHSTTTC---------C----CHHHHHHHH-HHHHHHHHHHHHTTCCCCCCGGGSCCCCCCCC-CCCCCCCSC-CST
T ss_pred HHHHHhcchH---------h----HHHHHHHHH-HHHHHHHHhhCeeeccCCCCccccCCccCccc-cccCCCCcc-ccc
Confidence 9998765432 1 234566665 67888999999999999996 8999999999 999999998 477
Q ss_pred CCC
Q 014319 406 SWT 408 (427)
Q Consensus 406 ~w~ 408 (427)
.|+
T Consensus 356 ~~~ 358 (704)
T 2xs1_A 356 KFT 358 (704)
T ss_dssp TCC
T ss_pred chh
Confidence 775
No 5
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-61 Score=490.52 Aligned_cols=324 Identities=15% Similarity=0.157 Sum_probs=256.7
Q ss_pred EEEecCCCCCCCCcccchHHhhHHHHHHHHH--HHHHHHHHH-HHhhhcCCccccccccccccCCCCCHHHHHHHHHHHH
Q 014319 24 VSVYVPGLRIPKPVDFSQSLGDNLSKNMVER--LSALRTRIV-VMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYL 100 (427)
Q Consensus 24 ~~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~--l~~lR~~i~-~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~ 100 (427)
-++.+| ||+|++|||..||++||.++|.++ -+.++++|. ++. ++|+.++++. ..+..++.|.+||
T Consensus 9 ~~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~-~lR~~~~~~~----------~~~~~~~~l~~Y~ 76 (392)
T 1zb1_A 9 YLFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELD-HLRNNANGEL----------APSSLSEQNLKYY 76 (392)
T ss_dssp CCCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHH-HHHHHTTSSC----------CHHHHHHHHHHHH
T ss_pred ccccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH-HHHHHhhcCC----------CChHHHHHHHHHH
Confidence 467788 999999999999999999988643 222233333 222 2222222211 1245678999999
Q ss_pred HHHhcccCCC--CCccceeeEEeeeCCC----CCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCH
Q 014319 101 PVLLGLVKDG--SQLQYKVQFVWVNQED----EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSE 174 (427)
Q Consensus 101 ~~L~~l~~~~--~~~~~~v~F~W~dsl~----~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~ 174 (427)
++|.++..+. +..+.+|.|+|+|+|+ ++.+++++|+.||++|||||+|++|+++|++ +++.
T Consensus 77 ~~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~-----------~~r~-- 143 (392)
T 1zb1_A 77 SFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVIFTQIARE-----------NINE-- 143 (392)
T ss_dssp HHHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHHHHHHHHH-----------TTTS--
T ss_pred HHHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHH-----------hchH--
Confidence 9999975321 1124689999999996 5578999999999999999999999999983 3333
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhh--ccchhhHHHHH
Q 014319 175 ESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS--TKATLAVKRRL 252 (427)
Q Consensus 175 dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~--~k~k~sliAKL 252 (427)
|+|.||++||+|||||+||++++++. | |+||++++|.+|+.+||||||||+|+||+.+ +++++++||||
T Consensus 144 -~lk~A~~~fq~AAG~f~~l~~~~~~~-~-------~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~~k~~liAkL 214 (392)
T 1zb1_A 144 -DYKNSIANLTKAFSCFEYLSENFLNS-P-------SVDLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKL 214 (392)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHCCCC-S-------SGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCC-C-------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHH
Confidence 89999999999999999999998753 2 3799999999999999999999999999973 48899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHH
Q 014319 253 ACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYF 326 (427)
Q Consensus 253 A~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l 326 (427)
|.|++++|++|.+.+++.+.. + +..+..+| +++ .++|+||||+|+++.+ +++||++||||+.|.+.+
T Consensus 215 a~~~~~~Y~~a~~~l~~~~~~--~--~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l 287 (392)
T 1zb1_A 215 SRATCNLFQKCHDFMKEIDDD--V--AIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEE---ENRVGEAIAFLDFSMQQL 287 (392)
T ss_dssp HHHHHHHHHHHHHHHHSCCCT--T--TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccc--c--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHH
Confidence 999999999999999977531 0 01245567 555 4577999999999999 999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCC
Q 014319 327 KESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL 400 (427)
Q Consensus 327 ~~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~l 400 (427)
+++.+.++.+. +.+ .++.+.++|+ +.+++++++||+||||+||+ +||+|++..+ |||+||+-
T Consensus 288 ~~a~~~~~~~~--------~~~--d~~~l~~~i~-~~l~~a~kdNd~IY~e~VP~~~~L~~i~~~~~-vk~~~~~~ 351 (392)
T 1zb1_A 288 ISSLPFKTWLV--------EFI--DFDGFKETLE-KKQKELIKDNDFIYHESVPAVVQVDSIKALDA-IKSPTWEK 351 (392)
T ss_dssp HHHGGGCTTTT--------TTS--CHHHHHHHHH-HHHHHHHHHHHSSSCCCCCSSCCGGGSCCCCC-CCCCCHHH
T ss_pred HHHHHhhhccc--------hHH--HHHHHHHHHH-HHHHHHHHHhCccCcCCCCCccccccCCCcCc-ccccCCcc
Confidence 99987754211 111 1446677775 67888999999999999994 7999999999 99997653
No 6
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=82.70 E-value=12 Score=29.81 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHH
Q 014319 292 KAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324 (427)
Q Consensus 292 kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~ 324 (427)
.+.+|+..|..... .+++-+||..++.|..
T Consensus 82 ~a~~~~~lg~~~~~---~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQK---QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Confidence 45678888888888 7888888887776653
No 7
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=76.26 E-value=20 Score=34.09 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 138 YEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 138 fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
.+.+.+++|+|.+|...+- ...|..+|++|--+|.
T Consensus 138 ~~~a~~~~~lg~~y~~~~~--------------------~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQ--------------------THVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------------cHHHHHHHHHHHHHHH
Confidence 5677888888876643331 4678888888877664
No 8
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=73.54 E-value=12 Score=30.83 Aligned_cols=29 Identities=10% Similarity=-0.167 Sum_probs=21.8
Q ss_pred HHHHHHhhhhccCCcchhHHHHHHHHHHHHHH
Q 014319 294 AAYYYHGLILDEGNTEKFHGMAVAALQAADEY 325 (427)
Q Consensus 294 ~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~ 325 (427)
-++|+.|..+.. .++|.+|+..|+.|..+
T Consensus 98 ~a~~~~g~~~~~---~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 98 KALFRRAKARIA---AWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhcHHHHHHHHHHHHhc
Confidence 466777777777 78888888888777654
No 9
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=72.14 E-value=30 Score=32.69 Aligned_cols=36 Identities=14% Similarity=-0.044 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 137 WYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 137 ~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
..+.+.+++|+|.+|...+- ...|..+|++|--+|.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQ--------------------TYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Confidence 45678888888877653331 4688899999877764
No 10
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.79 E-value=3.2 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.036 Sum_probs=29.7
Q ss_pred HHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 014319 295 AYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332 (427)
Q Consensus 295 A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 332 (427)
.|-+.+..+.. ..+|++||.|.+.|..+|.+|.++
T Consensus 17 ~~~RrAe~ll~---~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 17 QQSRRADRLLA---AGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677788 899999999999999999999875
No 11
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=68.68 E-value=27 Score=31.91 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHH
Q 014319 138 YEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYL 191 (427)
Q Consensus 138 fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F 191 (427)
+..+.++.|+|.+|...+ ....|..+|++|--.+
T Consensus 152 ~~~~~~~~~lg~~y~~~g--------------------~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENG--------------------YLKKGIDLFEQILKQL 185 (293)
T ss_dssp THHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHH
Confidence 456778999997775333 2578999999986554
No 12
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.33 E-value=15 Score=28.35 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 014319 291 AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332 (427)
Q Consensus 291 ~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 332 (427)
-+|+.....|...+. .++|.+|+.+++.|.+.+..+.+.
T Consensus 17 ~~Ai~lv~~Ave~D~---~g~y~eAl~lY~~aie~l~~alk~ 55 (83)
T 2w2u_A 17 EMARKYAINAVKADK---EGNAEEAITNYKKAIEVLAQLVSL 55 (83)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888998 999999999999999999998865
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=58.81 E-value=74 Score=26.03 Aligned_cols=30 Identities=7% Similarity=0.094 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 014319 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAA 188 (427)
Q Consensus 139 EkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AA 188 (427)
|-+.|++|+|.+|...+- ..+|..+|++|-
T Consensus 3 e~~~iy~~lG~~~~~~g~--------------------~~~A~~~~~~al 32 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGD--------------------FDGAIRAYKKVL 32 (184)
T ss_dssp -CHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Confidence 557889999988765542 568888888873
No 14
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=57.05 E-value=81 Score=25.94 Aligned_cols=33 Identities=27% Similarity=0.166 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHH
Q 014319 293 AAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE 328 (427)
Q Consensus 293 A~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~ 328 (427)
+.++...|..... .+++.+++.+++.|.+...+
T Consensus 147 ~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 147 ACAFRGLGDLAQQ---EKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CcCHHHHHHHHHHHHHHHHH
Confidence 3455666776776 67777777777777665443
No 15
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=55.84 E-value=35 Score=26.34 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 014319 291 AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKK 331 (427)
Q Consensus 291 ~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~ 331 (427)
.+|......|+..+. .++|.+|+.+|+.|.+++-.+.+
T Consensus 14 ~~A~~lv~~Ave~D~---~g~y~eAl~lY~~Aie~ll~alk 51 (86)
T 4a5x_A 14 TAAATVLKRAVELDS---ESRYPQALVCYQEGIDLLLQVLK 51 (86)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHh
Confidence 366777778888888 99999999999999999988875
No 16
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.73 E-value=34 Score=26.78 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 014319 289 FEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332 (427)
Q Consensus 289 ~~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 332 (427)
+.-+|+.....|+..+. .++|.+|+.+++.|.+++..+.+.
T Consensus 11 ~l~~Ai~lv~~Ave~D~---~g~y~eAl~~Y~~Aie~l~~alk~ 51 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDA---ESRYQQALVCYQEGIDMLLQVLKG 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888888998998 999999999999999999988764
No 17
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=52.21 E-value=62 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 139 EkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
..+.+++|+|.+|...+ ....|..+|++|--+++
T Consensus 153 ~~~~~~~~lg~~y~~~~--------------------~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 153 QNLYIENAIANIYAENG--------------------YLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHH
Confidence 45778999998775433 25689999999977665
No 18
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.54 E-value=31 Score=28.31 Aligned_cols=40 Identities=23% Similarity=0.057 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 014319 290 EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332 (427)
Q Consensus 290 ~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 332 (427)
.-+|+....+|+..+. .++|-+||.+|+.|.++|..+.+.
T Consensus 15 l~kAi~lv~~Ave~D~---ag~y~eAl~lY~~Aie~l~~alk~ 54 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDK---AGNYEEALQLYQHAVQYFLHVVKY 54 (117)
T ss_dssp HHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 3477777888888888 899999999999999999888763
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=51.09 E-value=81 Score=26.13 Aligned_cols=96 Identities=10% Similarity=-0.072 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhHHHH-------HHHHHHhhhhccchhhHHHHHH--HHHHHHHHHHHHHHhcCCCCCCCCccccc
Q 014319 212 VDLAEGDLRALCLQALGQGV-------DIQLGMAIDSTKATLAVKRRLA--CEMVKYWQQAQDNIMNLPLANGWGEKHKL 282 (427)
Q Consensus 212 ~Dl~~~~L~aL~~lmLAQAQ-------E~~~~KAi~~~k~k~sliAKLA--~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~ 282 (427)
..++|+...++..+..+--+ +-.+.+++..+...+.....|+ .....-|++|...+...-. .-
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--------l~ 100 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--------LG 100 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HS
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--------hC
Confidence 35777777777765544333 1335666653222223222222 2222345566555543211 00
Q ss_pred ccchhHHHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHH
Q 014319 283 FVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEY 325 (427)
Q Consensus 283 ~~~Wk~~~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~ 325 (427)
+..+ .+++..|..+.. .+++-+|+.+|+.|.++
T Consensus 101 P~~~-------~~~~~lg~~~~~---lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 KNDY-------TPVFHTGQCQLR---LKAPLKAKECFELVIQH 133 (151)
T ss_dssp SSCC-------HHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred CCCc-------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 0111 567777888887 78888888888777654
No 20
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.58 E-value=23 Score=27.10 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 014319 291 AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332 (427)
Q Consensus 291 ~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 332 (427)
-+|+.....|+..+. .++|.+|+.+++.|.+.+..+.+.
T Consensus 9 ~~Ai~lv~~Ave~D~---~g~y~eAl~lY~~aie~l~~~lk~ 47 (83)
T 2v6y_A 9 DMARKYAILAVKADK---EGKVEDAITYYKKAIEVLSQIIVL 47 (83)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888898 999999999999999999998864
No 21
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=44.02 E-value=2.1e+02 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 014319 140 VLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAA 188 (427)
Q Consensus 140 kasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AA 188 (427)
-+-.++|+|.+|..++- ..+|..+|++|-
T Consensus 8 ~a~al~nLG~~~~~~G~--------------------~~eAi~~~~kAl 36 (723)
T 4gyw_A 8 HADSLNNLANIKREQGN--------------------IEEAVRLYRKAL 36 (723)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Confidence 45678999987754432 568888888874
No 22
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=40.92 E-value=1.2e+02 Score=23.20 Aligned_cols=34 Identities=3% Similarity=-0.136 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHH
Q 014319 138 YEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYL 191 (427)
Q Consensus 138 fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F 191 (427)
...+.+++++|.++...+ ..++|..+|++|.-++
T Consensus 46 ~~~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLG--------------------EFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHH
Confidence 345678888886664322 1467888888876554
No 23
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=40.72 E-value=1.2e+02 Score=23.18 Aligned_cols=35 Identities=6% Similarity=-0.199 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 138 YEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 138 fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
...+.+++++|.++...+ ...+|..+|++|--++.
T Consensus 6 ~~~~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~al~~~~ 40 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLG--------------------NFRDAVIAHEQRLLIAK 40 (164)
T ss_dssp HHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--------------------CHHHHHHHHHHHHHHHH
Confidence 456788889886654222 25688889998876664
No 24
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=40.47 E-value=61 Score=31.28 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHH
Q 014319 136 AWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCA 194 (427)
Q Consensus 136 l~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~~l 194 (427)
-..+.+..++++|..+...+ ...+|..+|++|.-++...
T Consensus 218 ~~~~~a~~~~~~g~~~~~~g--------------------~~~~Ai~~y~kAl~~~~~~ 256 (370)
T 1ihg_A 218 KILLISEDLKNIGNTFFKSQ--------------------NWEMAIKKYTKVLRYVEGS 256 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------------CHHHHHHHHHHHHHHhhcC
Confidence 34677778888886654222 2578899999988776553
No 25
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=39.69 E-value=2.1e+02 Score=25.99 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHH
Q 014319 138 YEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYL 191 (427)
Q Consensus 138 fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F 191 (427)
.+.+.++.|+|.+|...+- ..+|..+|++|.-++
T Consensus 73 ~~~a~~~~~lg~~~~~~g~--------------------~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQR--------------------MPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------------------GGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHHHH
Confidence 3556777777766542221 246778888877665
No 26
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=38.03 E-value=2.2e+02 Score=25.54 Aligned_cols=34 Identities=15% Similarity=-0.055 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 139 EkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
+.+.++.|+|.+|...+ ...+|..+|++|.-++.
T Consensus 75 ~~a~~~~~lg~~~~~~g--------------------~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGG--------------------NSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHH
Confidence 55778888887764332 14688999999987763
No 27
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.24 E-value=53 Score=24.96 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 014319 292 KAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKA 332 (427)
Q Consensus 292 kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 332 (427)
+|.....+|+..+. .++|.+|+..++.|.+++..+.+.
T Consensus 12 ~A~~l~~~Av~~D~---~g~y~eAl~~Y~~aie~l~~a~k~ 49 (85)
T 2v6x_A 12 KGIELVQKAIDLDT---ATQYEEAYTAYYNGLDYLMLALKY 49 (85)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHh
Confidence 66777778888888 899999999999999999888764
No 28
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=30.92 E-value=2.4e+02 Score=23.73 Aligned_cols=12 Identities=0% Similarity=0.011 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHh
Q 014319 177 RRASVDIFLKAA 188 (427)
Q Consensus 177 lK~A~~~fq~AA 188 (427)
..+|..+|++|-
T Consensus 23 ~~~A~~~~~~al 34 (228)
T 4i17_A 23 YAVAFEKYSEYL 34 (228)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777777763
No 29
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=30.08 E-value=3.3e+02 Score=25.08 Aligned_cols=35 Identities=11% Similarity=-0.241 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 014319 292 KAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKES 329 (427)
Q Consensus 292 kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a 329 (427)
.+.+++..|..+.. .+++.+|+..++.|.......
T Consensus 262 ~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 262 ERRANSNLGNSHIF---LGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---CcCHHHHHHHHHHHHHHHHHc
Confidence 34588888888988 999999999998888776655
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=29.69 E-value=3e+02 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHH
Q 014319 141 LSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDC 193 (427)
Q Consensus 141 asVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~~ 193 (427)
+.++.++|.+++..|- .++|..+|++|--++.-
T Consensus 51 a~~yn~Lg~~~~~~G~--------------------~~eAl~~~~kAl~~~~~ 83 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ--------------------NEAALECLRKAEELIQQ 83 (472)
T ss_dssp CHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHh
Confidence 4556668877654442 57899999999777653
No 31
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=29.26 E-value=1.3e+02 Score=28.20 Aligned_cols=115 Identities=13% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHH
Q 014319 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGD 218 (427)
Q Consensus 139 EkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~ 218 (427)
+.+.+++|+|.++...+- ...|..+|++|.-+... .+....+.. ..+.+..
T Consensus 145 ~~a~~~~~~g~~~~~~g~--------------------~~~A~~~y~~Al~~~p~-----~~~~~~~~~----~~~~~~~ 195 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGK--------------------YKQALLQYKKIVSWLEY-----ESSFSNEEA----QKAQALR 195 (336)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHHTTT-----CCCCCSHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHhhc-----cccCChHHH----HHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccchhHHHHHHHHHHH
Q 014319 219 LRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYY 298 (427)
Q Consensus 219 L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~Wk~~~~kA~A~y~ 298 (427)
..++..+.....+.--+.+|+. +|+.|+..-.... .+++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~------------------~~~~al~~~p~~~----------------------~a~~~ 235 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIE------------------SCNKALELDSNNE----------------------KGLSR 235 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHCTTCH----------------------HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH------------------HHHHHHHhCCCcH----------------------HHHHH
Q ss_pred HhhhhccCCcchhHHHHHHHHHHHHHH
Q 014319 299 HGLILDEGNTEKFHGMAVAALQAADEY 325 (427)
Q Consensus 299 ~a~~~~~~~~~~k~GeaIa~L~~A~~~ 325 (427)
.|..+.. .+++-+|+..|+.|.++
T Consensus 236 lg~~~~~---~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 236 RGEAHLA---VNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH---CCCHHHHHHHHHHHHHH
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=28.84 E-value=4.2e+02 Score=25.89 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHh
Q 014319 177 RRASVDIFLKAA 188 (427)
Q Consensus 177 lK~A~~~fq~AA 188 (427)
..+|..+|++|.
T Consensus 153 ~~~A~~~~~~al 164 (474)
T 4abn_A 153 VTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456777776663
No 33
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=27.99 E-value=2.4e+02 Score=22.82 Aligned_cols=33 Identities=3% Similarity=-0.092 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 140 VLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 140 kasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
.+.+++++|.++...+ ....|..+|++|-.++.
T Consensus 25 ~~~~~~~l~~~~~~~g--------------------~~~~A~~~~~~al~~~~ 57 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMD--------------------RFDEARASFQALQQQAQ 57 (203)
T ss_dssp HHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--------------------cHHHHHHHHHHHHHHHH
Confidence 4677888886654222 24678889998877664
No 34
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=26.78 E-value=3.8e+02 Score=24.72 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhHH
Q 014319 177 RRASVDIFLKAAGYL 191 (427)
Q Consensus 177 lK~A~~~fq~AAG~F 191 (427)
...|..+|++|--++
T Consensus 200 ~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 200 YEDAISHFQKAYSMA 214 (383)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777765554
No 35
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=26.13 E-value=3.9e+02 Score=24.66 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhHH
Q 014319 177 RRASVDIFLKAAGYL 191 (427)
Q Consensus 177 lK~A~~~fq~AAG~F 191 (427)
...|..+|++|--++
T Consensus 198 ~~~A~~~~~~al~~~ 212 (378)
T 3q15_A 198 YDKALPHLEAALELA 212 (378)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666665444
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=25.78 E-value=3e+02 Score=23.26 Aligned_cols=31 Identities=3% Similarity=-0.298 Sum_probs=19.5
Q ss_pred HHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHH
Q 014319 294 AAYYYHGLILDEGNTEKFHGMAVAALQAADEYFK 327 (427)
Q Consensus 294 ~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~ 327 (427)
.+++..|..... .+++-+|+..++.+.+...
T Consensus 170 ~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 170 KTKNNLASCYLK---QGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHH
Confidence 444555665666 6677777777777665543
No 37
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=23.85 E-value=3.9e+02 Score=26.27 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 014319 293 AAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKES 329 (427)
Q Consensus 293 A~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a 329 (427)
|.+++-.|..... .++|.+|+..|+.|.+.++..
T Consensus 371 a~~l~nLa~~~~~---~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 371 GVQVMKVGKLQLH---QGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 4666677777777 888988988888888776665
No 38
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=23.47 E-value=4.3e+02 Score=24.23 Aligned_cols=34 Identities=0% Similarity=-0.024 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHH
Q 014319 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLD 192 (427)
Q Consensus 139 EkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~ 192 (427)
..+.+++++|.+|...+- ...|..+|++|--++.
T Consensus 84 ~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 84 TLSAIYSQLGNAYFYLGD--------------------YNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHH
Confidence 456678888877653331 4678888888866553
No 39
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.30 E-value=1.3e+02 Score=29.58 Aligned_cols=118 Identities=12% Similarity=-0.060 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCC
Q 014319 136 AWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLA 215 (427)
Q Consensus 136 l~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~ 215 (427)
..-+.+..++|+|..+...+- ...|..+|++|.-+... .+.+..+.. ..+.
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~--------------------~~~A~~~y~~Al~~~p~-----~~~~~~~~~----~~~~ 313 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGK--------------------YMQAVIQYGKIVSWLEM-----EYGLSEKES----KASE 313 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHTT-----CCSCCHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHHHhcc-----cccCChHHH----HHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccchhHHHHHHHH
Q 014319 216 EGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAA 295 (427)
Q Consensus 216 ~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~Wk~~~~kA~A 295 (427)
+....++.++..+.-+---+.+|+. .|+.|+..-.... .+
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~------------------~~~~al~~~p~~~----------------------~a 353 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVE------------------CCDKALGLDSANE----------------------KG 353 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHSTTCH----------------------HH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHH------------------HHHHHHhcCCccH----------------------HH
Q ss_pred HHHHhhhhccCCcchhHHHHHHHHHHHHHH
Q 014319 296 YYYHGLILDEGNTEKFHGMAVAALQAADEY 325 (427)
Q Consensus 296 ~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~ 325 (427)
+|+.|..+.. .++|-+|+..|+.|.++
T Consensus 354 ~~~~g~a~~~---~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 354 LYRRGEAQLL---MNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---ccCHHHHHHHHHHHHHh
No 40
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=23.26 E-value=3.4e+02 Score=26.79 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 014319 293 AAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKES 329 (427)
Q Consensus 293 A~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a 329 (427)
|.+++-.|..+.. .++|.+|+..|+.|.+.++..
T Consensus 382 a~~l~nLa~~~~~---qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 382 ASMWLKLGRLYMG---LENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---ccCHHHHHHHHHHHHHHHHHH
Confidence 4666777777888 889999998888888776655
Done!