Query 014321
Match_columns 427
No_of_seqs 187 out of 627
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 4.4E-87 9.5E-92 664.5 15.9 357 52-427 133-491 (549)
2 COG4299 Uncharacterized protei 100.0 9.6E-67 2.1E-71 503.8 20.5 286 61-427 6-295 (371)
3 PF07786 DUF1624: Protein of u 99.9 4.2E-21 9E-26 181.7 17.5 190 62-347 1-195 (223)
4 COG3503 Predicted membrane pro 99.5 4.4E-13 9.6E-18 132.9 14.5 120 61-192 14-138 (323)
5 COG2311 Predicted membrane pro 99.3 1.4E-11 2.9E-16 127.1 12.5 119 58-196 8-142 (394)
6 PRK10835 hypothetical protein; 98.7 1.2E-07 2.7E-12 97.5 12.3 103 66-194 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 98.0 0.00026 5.6E-09 73.0 17.0 80 62-145 1-83 (358)
8 PF01757 Acyl_transf_3: Acyltr 97.6 0.0024 5.1E-08 60.1 15.7 82 64-145 2-89 (340)
9 PF06423 GWT1: GWT1; InterPro 97.4 0.00081 1.8E-08 60.4 8.9 86 314-402 3-97 (136)
10 PRK03854 opgC glucans biosynth 97.0 0.0043 9.4E-08 63.4 9.8 90 57-147 3-101 (375)
11 COG4645 Uncharacterized protei 95.6 0.023 4.9E-07 58.5 6.2 77 61-142 22-102 (410)
12 COG3274 Predicted O-acyltransf 90.0 26 0.00056 36.3 20.0 57 60-116 2-65 (332)
13 COG1835 Predicted acyltransfer 85.5 0.55 1.2E-05 48.3 2.5 70 55-128 7-76 (386)
14 PF15345 TMEM51: Transmembrane 84.2 0.59 1.3E-05 45.8 1.9 52 350-402 9-82 (233)
15 COG5062 Uncharacterized membra 72.2 7.6 0.00016 40.7 5.7 239 58-402 106-352 (429)
16 COG3594 NolL Fucose 4-O-acetyl 67.9 6.3 0.00014 41.0 4.1 50 60-115 2-54 (343)
17 PF05857 TraX: TraX protein; 60.0 1.5E+02 0.0032 28.2 11.7 70 65-149 2-71 (219)
18 PF07760 DUF1616: Protein of u 47.8 3E+02 0.0066 27.5 12.1 74 103-189 29-106 (287)
19 COG3619 Predicted membrane pro 45.0 1.1E+02 0.0024 30.1 8.2 59 90-150 48-106 (226)
20 PRK05771 V-type ATP synthase s 39.6 63 0.0014 36.0 6.3 68 312-399 344-411 (646)
21 KOG4683 Uncharacterized conser 38.0 23 0.0005 37.5 2.4 27 211-237 281-307 (549)
22 PF13828 DUF4190: Domain of un 34.8 71 0.0015 25.2 4.2 49 316-364 9-58 (62)
23 PF04235 DUF418: Protein of un 34.2 25 0.00055 31.7 1.8 77 340-426 10-91 (163)
24 KOG0721 Molecular chaperone (D 30.8 28 0.00061 34.3 1.6 46 371-427 62-107 (230)
25 PF06570 DUF1129: Protein of u 26.7 3.8E+02 0.0082 25.4 8.5 18 369-386 169-186 (206)
26 PF11654 DUF2665: Protein of u 25.5 93 0.002 23.5 3.2 32 104-135 7-40 (47)
27 TIGR02230 ATPase_gene1 F0F1-AT 25.1 2.2E+02 0.0048 24.7 5.9 27 313-339 40-68 (100)
28 PF09877 DUF2104: Predicted me 25.0 3.5E+02 0.0077 23.5 7.0 31 353-393 39-70 (99)
29 PF12794 MscS_TM: Mechanosensi 24.6 7.8E+02 0.017 25.3 11.6 53 128-190 123-175 (340)
30 PF03547 Mem_trans: Membrane t 23.0 2.7E+02 0.0059 28.2 7.2 51 99-149 277-328 (385)
31 PF06779 DUF1228: Protein of u 22.1 1.5E+02 0.0033 24.7 4.2 36 327-362 36-71 (85)
32 PF11255 DUF3054: Protein of u 21.1 5.4E+02 0.012 22.5 7.7 76 312-395 24-105 (112)
33 PF08592 DUF1772: Domain of un 21.0 1E+02 0.0022 26.5 3.2 8 369-376 86-93 (139)
34 PF08507 COPI_assoc: COPI asso 21.0 5.8E+02 0.013 22.5 8.5 51 98-148 29-82 (136)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-87 Score=664.51 Aligned_cols=357 Identities=40% Similarity=0.702 Sum_probs=311.9
Q ss_pred hhhcccccCchhhHHHHHHHHHHHHHHHHhcccccccCccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Q 014321 52 LQQLLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVK 131 (427)
Q Consensus 52 ~~~~~~~~~~Rl~SLD~lRGlti~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~ 131 (427)
+.+..++.++|+.|||+|||+|+++||+||+.|+.||+++||+|||++++|+|||+|+||||+|+++|+++..+|.+..|
T Consensus 133 ~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~r 212 (549)
T KOG4683|consen 133 EARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATR 212 (549)
T ss_pred hhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhH
Confidence 44555666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHhccCCCCCCCc-cchhhhhhhH
Q 014321 132 KIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEP-RHLSIFTAYQ 210 (427)
Q Consensus 132 kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~~~~~~~~~~~-~~~~~~~~~~ 210 (427)
|.-.|+.+|+++|++++++|.|+++++|++.|.+.+|++|||||+|++|+++|++..+..+....+..- +.+.....+.
T Consensus 213 Ka~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~~~~~S~~R~V~~~~L~~ 292 (549)
T KOG4683|consen 213 KAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPISPQRSWQRAVHDVCLFS 292 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCccccchhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876643221100 0000000011
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCC-CCCChhHHHhhhhcCCCCccCCcccccccc
Q 014321 211 WQWIGGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLG-PACNAVGYVDRELWGINHLYSDPVWSRLEA 289 (427)
Q Consensus 211 ~q~~~~~~ll~~Y~~l~~~l~vP~~~~~~~~pg~~~~~~~~cg~~g~l~-~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~ 289 (427)
....+-..++.-|..++|++.+|+||.+|++| ||.++... |.||++||.||++||++||||+|++||+|+
T Consensus 293 ~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~---------~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~ 363 (549)
T KOG4683|consen 293 GELAVLLALVATYLGLTFGLRVPGCPRGYLGP---------GGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKRVKD 363 (549)
T ss_pred HHHHHHHHhhhhhhceecccccCCCCcccccC---------CcccccCCCCCccchhhhHHhhhhhHHHhcCchHHHhhh
Confidence 11222223334444555666666666666655 55566665 459999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 014321 290 CTLSSPNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNA 369 (427)
Q Consensus 290 ~~~~~p~~g~~~~~~~~~~~~~fDPEGlLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~ 369 (427)
||.++|++||++.|+|+||.+|||||||||+|.|++++++|+++|+++.+.+++..|+++|...++++.++|..+++.+.
T Consensus 364 cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~s~ 443 (549)
T KOG4683|consen 364 CSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGFSA 443 (549)
T ss_pred cccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998879
Q ss_pred ccccccCCCchhHHHhhhhHHHHHHHhhhhhccCCccccccccccccCCcceEEEecC
Q 014321 370 IPINKQLYSFSYVCFTADGCLGITNSIFIPEMDWDECDACFRAWSTRYPSRICKWMVL 427 (427)
Q Consensus 370 ~PiNK~LWT~SfVL~T~~G~a~llLa~~y~liD~~~~~~~~~v~~~~~~~~~f~v~Gm 427 (427)
+|+||||||.||+|+|+ |.|+++|+.+|++|| |+.|+....||+|.||
T Consensus 444 ~Plnk~L~slsfvCVT~-~~A~Li~S~mY~~iD---------v~EW~~~~~P~~~~GM 491 (549)
T KOG4683|consen 444 IPLNKNLWSLSFVCVTV-SLALLILSLMYYFID---------VREWSWSGYPFTECGM 491 (549)
T ss_pred cchhHhHHHhhhhHHHH-HHHHHHHHHHHHHhh---------HHHhhhccCChhhhcc
Confidence 99999999999999999 999999999999999 9999999999999998
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=9.6e-67 Score=503.83 Aligned_cols=286 Identities=29% Similarity=0.371 Sum_probs=257.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccc---cccCccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHH
Q 014321 61 KRVATLDAFRGLTVVLMILVDDAGG---AYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRT 137 (427)
Q Consensus 61 ~Rl~SLD~lRGlti~lMIlVN~~g~---~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRs 137 (427)
-|+.|||++||+|+++||+|||.|- .|+|+.|++|+|+|++|+|||+|+|++|.||+||.+|..+.+....++.||.
T Consensus 6 ~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RRa 85 (371)
T COG4299 6 FRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRRA 85 (371)
T ss_pred hhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHHH
Confidence 7999999999999999999999863 7999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHhhcCCCCCCccccCcc-CccceecchHHHHHHHHHHHHHHHHHhccCCCCCCCccchhhhhhhHHHHHHH
Q 014321 138 LKLLFWGIILQGGYSHAPDALSYGVD-MKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIGG 216 (427)
Q Consensus 138 l~LfllGlll~~~f~~~~~~l~~~~~-~~~~Ri~GVLQrIal~Yli~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 216 (427)
+.+|++|.+++.+ ..-. .|.++ .+.+|.+||||||++||+++|+....+++ |+||+.+
T Consensus 86 a~~f~Lg~Lm~~F-~~~~---~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~la 144 (371)
T COG4299 86 AERFALGYLMGAF-VTVR---DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQALLA 144 (371)
T ss_pred HHHHHHHHHhhhc-cccc---eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHHHH
Confidence 9999999999863 2211 13344 67899999999999999999999877654 5899999
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCCCCCChhHHHhhhhcCCCCccCCccccccccccCCCCC
Q 014321 217 FIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSPN 296 (427)
Q Consensus 217 ~~ll~~Y~~l~~~l~vP~~~~~~~~pg~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~p~ 296 (427)
++++++||+++...|+|+.| ++..+|...++|+...+.||+|...
T Consensus 145 avLL~gYwl~lm~~p~P~~~---------------------l~~~Gn~g~~~d~l~i~~~hLy~~d-------------- 189 (371)
T COG4299 145 AVLLAGYWLFLMFTPHPAAP---------------------LGGIGNVGESADPLQILNDHLYSAD-------------- 189 (371)
T ss_pred HHHHHHHHHHHhhcCCCccc---------------------cccccccccccchhhhhhhhhhccc--------------
Confidence 99999999988888888653 3456799999999999999999741
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccccccC
Q 014321 297 SGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQL 376 (427)
Q Consensus 297 ~g~~~~~~~~~~~~~fDPEGlLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~L 376 (427)
..|||||++||+|++++++.|+++++++++++...+...++.+.|++++++|+.|+. .+||||+|
T Consensus 190 -------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~fPi~KkL 254 (371)
T COG4299 190 -------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RFPISKKL 254 (371)
T ss_pred -------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--ccccchhh
Confidence 348999999999999999999999999998877777778889999999999999985 79999999
Q ss_pred CCchhHHHhhhhHHHHHHHhhhhhccCCccccccccccccCCcceEEEecC
Q 014321 377 YSFSYVCFTADGCLGITNSIFIPEMDWDECDACFRAWSTRYPSRICKWMVL 427 (427)
Q Consensus 377 WT~SfVL~T~~G~a~llLa~~y~liD~~~~~~~~~v~~~~~~~~~f~v~Gm 427 (427)
||||||++|+ |++.++++.||.++| .++.|++..||+++|.
T Consensus 255 WTssyvl~t~-G~~llllaac~~l~e---------~~~~kr~~~pf~i~Gl 295 (371)
T COG4299 255 WTSSYVLYTA-GLGLLLLAACWVLAE---------SPGGKRLLAPFTIPGL 295 (371)
T ss_pred cCCceeehhh-hHHHHHHHHHHHHHc---------CcccCcCcCceeecCc
Confidence 9999999999 999999999999999 9999999999999984
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.87 E-value=4.2e-21 Score=181.70 Aligned_cols=190 Identities=23% Similarity=0.306 Sum_probs=134.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccc-ccc-Ccc-cc--CCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHH
Q 014321 62 RVATLDAFRGLTVVLMILVDDAGG-AYA-RID-HS--PWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (427)
Q Consensus 62 Rl~SLD~lRGlti~lMIlVN~~g~-~~~-~l~-Ha--~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrR 136 (427)
|+.++|++||++|++|+++|.... .+. ..+ |. .+....+.|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998754 221 111 22 234456889999999999999999999887765 889999
Q ss_pred HHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHhccCCCCCCCccchhhhhhhHHHHHHH
Q 014321 137 TLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWIGG 216 (427)
Q Consensus 137 sl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 216 (427)
++.|+++|++++.. ++...++...++||||.||++|++++++. .+++ +..++++
T Consensus 77 ~~~l~~~g~~i~~~--------~~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~~~-----------------~~~~~~~ 130 (223)
T PF07786_consen 77 GLKLFLLGLLINLL--------TFFFFPEGFIYFGILQFIGLSMLLAALFL-RLPR-----------------RALLILA 130 (223)
T ss_pred HHHHHHHHHHHHHH--------HHHhcCCceeehhHHHHHHHHHHHHHHHH-hcch-----------------hHHHHHH
Confidence 99999999999764 12233456668899999999999988773 3322 2345556
Q ss_pred HHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCCCCCChhHHHhhhhcCCCCccCCccccccccccCCCCC
Q 014321 217 FIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSSPN 296 (427)
Q Consensus 217 ~~ll~~Y~~l~~~l~vP~~~~~~~~pg~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~~~p~ 296 (427)
++++++++.+... +.+ . + +...+| ++.
T Consensus 131 ~~~~~~~~~l~~~--~~~-------------------------~--~-----~~~~~~---~~~---------------- 157 (223)
T PF07786_consen 131 LLLLALSWLLSGP--VFG-------------------------P--P-----WLLWLG---LSS---------------- 157 (223)
T ss_pred HHHHHHHHHHhhh--hcC-------------------------c--h-----HHHHhc---ccc----------------
Confidence 6666666654321 000 0 0 111122 111
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHH
Q 014321 297 SGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARL 347 (427)
Q Consensus 297 ~g~~~~~~~~~~~~~fDPEGlLstipAi~~~llG~~aG~~L~~~~~~~~rl 347 (427)
..++++|..+.+|+++..++|+.+|++..+..+.+.+.
T Consensus 158 -------------~~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~~~~~~ 195 (223)
T PF07786_consen 158 -------------RNFFSNGYFPLFPWLGFFLLGMALGRLFLRKGRRRFRV 195 (223)
T ss_pred -------------cCCCcCCcCccHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 24688999999999999999999999998764444333
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.49 E-value=4.4e-13 Score=132.90 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=95.2
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccc--cccCccccCC-CC--chhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Q 014321 61 KRVATLDAFRGLTVVLMILVDDAGG--AYARIDHSPW-NG--CTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (427)
Q Consensus 61 ~Rl~SLD~lRGlti~lMIlVN~~g~--~~~~l~Ha~W-~G--~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilr 135 (427)
+|+.++|++||++|++|++.|...+ .+.+++-+.= .| ..++.++.|.|+|++|+|..++-.|..++ .++.+|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999885543 2334443322 33 23788999999999999999998887763 789999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHhcc
Q 014321 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTK 192 (427)
Q Consensus 136 Rsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~~~ 192 (427)
|.++|..+++.+... ||..-++++.++|||+.||++.++.+.+. .+++
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl-~lP~ 138 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL-WLPR 138 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH-hCch
Confidence 999999999999874 44334588999999999999998877554 4443
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.31 E-value=1.4e-11 Score=127.11 Aligned_cols=119 Identities=29% Similarity=0.485 Sum_probs=94.5
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhcccccccC----ccccCC-CCc-----hhHHH-----HHHHHHHHHHHHHHHHhcc
Q 014321 58 QKSKRVATLDAFRGLTVVLMILVDDAGGAYAR----IDHSPW-NGC-----TLADF-----VMPFFLFIVGVAIALALKK 122 (427)
Q Consensus 58 ~~~~Rl~SLD~lRGlti~lMIlVN~~g~~~~~----l~Ha~W-~G~-----t~aDl-----VfP~FlFivGvSi~ls~~r 122 (427)
.+++|+.++|++||+++++++++|.....+|- .-|..| .+. -+.|+ +.|+|.|++|+++...++|
T Consensus 8 ~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~~r 87 (394)
T COG2311 8 AQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMMLRR 87 (394)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence 34589999999999999999999987654431 113333 322 13343 7899999999999999998
Q ss_pred cCCchH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHhccCCCC
Q 014321 123 VPKING-AVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPN 196 (427)
Q Consensus 123 ~~~k~~-~~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~~~~~~~ 196 (427)
..+|++ ..+..+||...|+++|++|.. |.|. ++|-+.|.+++++.+.+.++++|
T Consensus 88 ~~~~g~~~~~~~~RR~~~Lll~G~iH~~-fiW~-------------------GDIL~~Ya~~g~ill~~~~~~~k 142 (394)
T COG2311 88 AARKGRRWVALYARRLLLLLLLGLIHAL-FIWD-------------------GDILLAYALTGLILLLFRRRKPK 142 (394)
T ss_pred HHHccCccHHHHHHHHHHHHHHHHHHHH-HHhc-------------------chHHHHHHHHHHHHHHHHhcccc
Confidence 777664 577779999999999999975 4553 89999999999999999888765
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.70 E-value=1.2e-07 Score=97.54 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccC-------ccc--cCCCCc--hhHHH-----HHHHHHHHHHHHHHHHhcccCCchHH
Q 014321 66 LDAFRGLTVVLMILVDDAGGAYAR-------IDH--SPWNGC--TLADF-----VMPFFLFIVGVAIALALKKVPKINGA 129 (427)
Q Consensus 66 LD~lRGlti~lMIlVN~~g~~~~~-------l~H--a~W~G~--t~aDl-----VfP~FlFivGvSi~ls~~r~~~k~~~ 129 (427)
||++||++++++++||......+. ..| +.+|.. .+.++ .+|+|.|++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999965332221 111 011111 12233 6899999999999999875322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHhccCC
Q 014321 130 VKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRR 194 (427)
Q Consensus 130 ~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~~~~~ 194 (427)
...||...|+++|++|... .|. ++|...|.+++++.+.+.+.+
T Consensus 77 --~~~rRl~~Ll~~GliH~~l-lw~-------------------GDIL~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLL-FWD-------------------GDILLAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHH-Hcc-------------------chHHHHHHHHHHHHHHHHhcc
Confidence 3569999999999999752 232 789999999999998887753
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.00 E-value=0.00026 Score=73.03 Aligned_cols=80 Identities=26% Similarity=0.401 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccccCccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCch---HHHHHHHHHHH
Q 014321 62 RVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKIIFRTL 138 (427)
Q Consensus 62 Rl~SLD~lRGlti~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~---~~~~kilrRsl 138 (427)
|...||.+||+++.. |++|...+.. +++-.++-+.+.|- .-.|+|+.|++..+.+.|+..|. ...+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~-Ifi~Hip~~~--~~~~T~~~~Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVM-IFIDHIPGNV--LEWFTLRNFGFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHH-HHHHhcCCcH--HHHhccccccCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 667899999999954 5666654322 23333333333332 35699999999999998765432 46889999988
Q ss_pred HHHHHHH
Q 014321 139 KLLFWGI 145 (427)
Q Consensus 139 ~LfllGl 145 (427)
.|..--+
T Consensus 77 ~lY~a~i 83 (358)
T PF10129_consen 77 QLYVAHI 83 (358)
T ss_pred HHHHHHH
Confidence 7765444
No 8
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.64 E-value=0.0024 Score=60.10 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccC-ccccCCCC--c---hhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHH
Q 014321 64 ATLDAFRGLTVVLMILVDDAGGAYAR-IDHSPWNG--C---TLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRT 137 (427)
Q Consensus 64 ~SLD~lRGlti~lMIlVN~~g~~~~~-l~Ha~W~G--~---t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRs 137 (427)
.++|.+||++++++++.|........ ........ . .......|+|.++.|..+....++..+..+..+|-++|.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~~~~~~~~~~~~~~~~R~~rl 81 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLARSSKSRKSWKKFLKKRFLRL 81 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence 57999999999999998865431110 11100000 0 567789999999999999811111122223444444555
Q ss_pred HHHHHHHH
Q 014321 138 LKLLFWGI 145 (427)
Q Consensus 138 l~LfllGl 145 (427)
...+++..
T Consensus 82 ~~~~~~~~ 89 (340)
T PF01757_consen 82 LIPYLFWS 89 (340)
T ss_pred hHHHHHHH
Confidence 44444443
No 9
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.41 E-value=0.00081 Score=60.40 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=68.0
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHhcccchh---------HHHHHHHHHHHHHHHHHHHHhhCCCccccccCCCchhHHH
Q 014321 314 PEGLLSTISAILSGTIGIHYGHVLIHFKGHS---------ARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCF 384 (427)
Q Consensus 314 PEGlLstipAi~~~llG~~aG~~L~~~~~~~---------~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~LWT~SfVL~ 384 (427)
-|||+|.+.-++.=++|...|+.+...+... +...+++.+.+++.++-++++. ...|+.+++...+||++
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~vSRRlaNl~Yvlw 81 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNS-YIEPVSRRLANLPYVLW 81 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHhcchHHHHH
Confidence 5999999999999999999999996554333 3445666777777777777753 37999999999999999
Q ss_pred hhhhHHHHHHHhhhhhcc
Q 014321 385 TADGCLGITNSIFIPEMD 402 (427)
Q Consensus 385 T~~G~a~llLa~~y~liD 402 (427)
+. +.....++.++ ++|
T Consensus 82 v~-a~n~~~l~~~~-~i~ 97 (136)
T PF06423_consen 82 VL-AFNTFFLALYL-LIE 97 (136)
T ss_pred HH-HHHHHHHHHHH-HHH
Confidence 99 88877776654 444
No 10
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=96.95 E-value=0.0043 Score=63.39 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=59.6
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHhcccc--cccC----ccccCCCCc-h-hHH-HHHHHHHHHHHHHHHHHhcccCCch
Q 014321 57 QQKSKRVATLDAFRGLTVVLMILVDDAGG--AYAR----IDHSPWNGC-T-LAD-FVMPFFLFIVGVAIALALKKVPKIN 127 (427)
Q Consensus 57 ~~~~~Rl~SLD~lRGlti~lMIlVN~~g~--~~~~----l~Ha~W~G~-t-~aD-lVfP~FlFivGvSi~ls~~r~~~k~ 127 (427)
+++++|...+|.+||+++++.++.|.... .... .+.+.|-.. . ..+ .-+|.|.|+.|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 34568999999999999999988875321 1110 011112111 0 111 358999999999988887554 335
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014321 128 GAVKKIIFRTLKLLFWGIIL 147 (427)
Q Consensus 128 ~~~~kilrRsl~LfllGlll 147 (427)
+..+|=++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 67888888888888887654
No 11
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.023 Score=58.49 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=53.7
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccc-cccCccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCch-H--HHHHHHHH
Q 014321 61 KRVATLDAFRGLTVVLMILVDDAGG-AYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN-G--AVKKIIFR 136 (427)
Q Consensus 61 ~Rl~SLD~lRGlti~lMIlVN~~g~-~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~-~--~~~kilrR 136 (427)
+|...||++||++++.| ++|...+ .+..+.|-+. .+.|- .=.|+|+.|+++...++|+--++ + -..|+-||
T Consensus 22 kRdtriDv~Ral~Lv~I-fiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lkiWrR 96 (410)
T COG4645 22 KRDTRIDVFRALALVTI-FINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKIWRR 96 (410)
T ss_pred CchhHHHHHHHHHHHHH-HHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHHHHH
Confidence 79999999999999776 5576543 4444555432 22221 23599999999999998765332 3 35588899
Q ss_pred HHHHHH
Q 014321 137 TLKLLF 142 (427)
Q Consensus 137 sl~Lfl 142 (427)
+..|..
T Consensus 97 A~~LY~ 102 (410)
T COG4645 97 AMVLYV 102 (410)
T ss_pred HHHHHH
Confidence 888876
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=90.02 E-value=26 Score=36.31 Aligned_cols=57 Identities=16% Similarity=0.399 Sum_probs=41.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcccc-cccC-ccccC-C---CCc-hhHHHHHHHHHHHHHHHH
Q 014321 60 SKRVATLDAFRGLTVVLMILVDDAGG-AYAR-IDHSP-W---NGC-TLADFVMPFFLFIVGVAI 116 (427)
Q Consensus 60 ~~Rl~SLD~lRGlti~lMIlVN~~g~-~~~~-l~Ha~-W---~G~-t~aDlVfP~FlFivGvSi 116 (427)
.+|+.++|.+|++++++.+.++.... .+.+ ..|.. | |++ +..-..-|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999888887654 2322 22331 4 555 366779999999999643
No 13
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=85.49 E-value=0.55 Score=48.26 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=42.9
Q ss_pred cccccCchhhHHHHHHHHHHHHHHHHhcccccccCccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchH
Q 014321 55 LLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKING 128 (427)
Q Consensus 55 ~~~~~~~Rl~SLD~lRGlti~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~ 128 (427)
...+.++|+.+||.+||++.++.++.|......+. +..+-+ ...+.-..|..+.|.-|.-++.++..+++
T Consensus 7 ~~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~--~g~~gVdiFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 7 AINSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVG--RGVLGVDLFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred cccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccc--ccccceeEeeeccHHHHHHHHHHHhhcCC
Confidence 33445689999999999999888877754321110 111111 11223345778899999988776554433
No 14
>PF15345 TMEM51: Transmembrane protein 51
Probab=84.17 E-value=0.59 Score=45.84 Aligned_cols=52 Identities=27% Similarity=0.479 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcc----------------------ccccCCCchhHHHhhhhHHHHHHHhhhhhcc
Q 014321 350 WVSMGFGLLIIAIILHFTNAIP----------------------INKQLYSFSYVCFTADGCLGITNSIFIPEMD 402 (427)
Q Consensus 350 ~l~~G~~ll~lG~ll~~~~~~P----------------------iNK~LWT~SfVL~T~~G~a~llLa~~y~liD 402 (427)
+-++|+.|+++|.++-.+.++| .+++=-|.-|||+-+ |+++|+|++|.-+=|
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~-Gv~LLLLSICL~IR~ 82 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGS-GVALLLLSICLSIRD 82 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhH-HHHHHHHHHHHHHHH
Confidence 4467999999999886543444 223445677999999 999999999988877
No 15
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=72.25 E-value=7.6 Score=40.69 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=134.3
Q ss_pred ccCchhhHHHHHHHHHHHHHHH----Hhccccccc-CccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHH
Q 014321 58 QKSKRVATLDAFRGLTVVLMIL----VDDAGGAYA-RIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKK 132 (427)
Q Consensus 58 ~~~~Rl~SLD~lRGlti~lMIl----VN~~g~~~~-~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~k 132 (427)
.-+.|..++|..|+..+..-.. |+.+ .|| -+..++--|.++-|+---.|+|-.|+--. |.++| +
T Consensus 106 ~~~~~~~~it~yR~~i~~~tviaIlAvDFp--~fprRlgKsetwGtsLMDiGVGSFvynsGivs~----RaksK-----~ 174 (429)
T COG5062 106 DEPYTSMAITRYRFLIIGCTVIAILAVDFP--FFPRRLGKSETWGTSLMDIGVGSFVYNSGIVST----RAKSK-----R 174 (429)
T ss_pred ccccchhhhHHHHHHHHHhhhhheeeeccc--cchHhhhhhhcccceeeecccceeEeccceeec----ccCcc-----H
Confidence 3456888999999865432222 2221 122 14455556788999988889888876321 23332 3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHhccCCCCCCCccchhhhhhhHHH
Q 014321 133 IIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQ 212 (427)
Q Consensus 133 ilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~~~~~~~~~~~~~~~~~~~~~~q 212 (427)
.+|-++.|+++|++=... -. +.--++|.|=.||=.-.=+.-.+..+.+.+.+++ ..
T Consensus 175 ~lkn~lillflGflR~f~--vk-----~lnyqvhvrEyGvhwNFfftLgllnl~~~fir~r-----------------~n 230 (429)
T COG5062 175 KLKNALILLFLGFLRYFS--VK-----LLNYQVHVREYGVHWNFFFTLGLLNLASLFIRTR-----------------AN 230 (429)
T ss_pred HHHhhhHHHHHHHHHHHH--HH-----HhccccccHHheeehhHHHHHHHHHHHHHHhhhh-----------------Hh
Confidence 788999999999964321 00 0112345555565555444445555666555432 23
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecCCCCCCCCCCChhHHHhhhhcCCCCccCCccccccccccC
Q 014321 213 WIGGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTL 292 (427)
Q Consensus 213 ~~~~~~ll~~Y~~l~~~l~vP~~~~~~~~pg~~~~~~~~cg~~g~l~~~~N~a~~IDr~vLG~~HlY~~p~~~~~~~~~~ 292 (427)
..++..+..+|-+++-.. | + .|++--=||.=+
T Consensus 231 flLg~fi~l~he~lLkf~-------------------------~-l---~kfi~sa~R~~i------------------- 262 (429)
T COG5062 231 FLLGFFICLTHELLLKFF-------------------------G-L---EKFIYSAARSSI------------------- 262 (429)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------c-H---HHhhhcCchhhH-------------------
Confidence 456666666676555321 0 1 011111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHHHHHHHhhCCC
Q 014321 293 SSPNSGPLREDAPSWCRAPFEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFG---LLIIAIILHFTNA 369 (427)
Q Consensus 293 ~~p~~g~~~~~~~~~~~~~fDPEGlLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~---ll~lG~ll~~~~~ 369 (427)
-.=.-|||.|++|-+..-+.|.-.|+++...+.. |.+.|=.++.. .+.+=.+.++..
T Consensus 263 -----------------l~~NrEGI~sll~yisIfl~g~~tg~vvf~~kpT--r~~~wk~~~~~~af~lciylVfnf~s- 322 (429)
T COG5062 263 -----------------LTSNREGITSLLPYISIFLMGADTGKVVFKKKPT--RKKAWKIIILYNAFFLCVYLVFNFYS- 322 (429)
T ss_pred -----------------HHhchhhhhhcchhhhheeeecccceEEecCCCc--hHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 1127799999999999999999999998765542 33333333332 233333334421
Q ss_pred ccccccCCCchhHHHhhhhHHHHHHHhhhhhcc
Q 014321 370 IPINKQLYSFSYVCFTADGCLGITNSIFIPEMD 402 (427)
Q Consensus 370 ~PiNK~LWT~SfVL~T~~G~a~llLa~~y~liD 402 (427)
-- ..++=...||++.. -+= .+....|.++|
T Consensus 323 ~s-sRRlaNlpfv~wi~-~lh-~f~lt~y~lfd 352 (429)
T COG5062 323 TS-SRRLANLPFVMWIM-LLH-TFHLTVYELFD 352 (429)
T ss_pred cc-hhhhcCccHHHHHH-HHH-HHHhheeeeee
Confidence 11 67777888888877 332 23445577777
No 16
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=67.90 E-value=6.3 Score=40.98 Aligned_cols=50 Identities=28% Similarity=0.484 Sum_probs=36.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcccccccCccccCCCCc---hhHHHHHHHHHHHHHHH
Q 014321 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGC---TLADFVMPFFLFIVGVA 115 (427)
Q Consensus 60 ~~Rl~SLD~lRGlti~lMIlVN~~g~~~~~l~Ha~W~G~---t~aDlVfP~FlFivGvS 115 (427)
++|-.++|+-||+-|++.++-|..+..++ |.-. -..-+-+|+|.||.|.-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 57999999999999999988776543221 3321 24455799999999974
No 17
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=60.04 E-value=1.5e+02 Score=28.16 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Q 014321 65 TLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWG 144 (427)
Q Consensus 65 SLD~lRGlti~lMIlVN~~g~~~~~l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRsl~LfllG 144 (427)
|-|.+.=++++.|++ |+.+..+ ....+| -..+.-+.||.|.|++.-...- . +..+|.++| |++++
T Consensus 2 s~~~LK~iA~i~M~i-DHi~~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~----T----~n~~kY~~R---L~~~a 66 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLI-DHIGFLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH----T----RNRKKYLLR---LLIFA 66 (219)
T ss_pred chhHHHHHHHHHHHH-Hhhcccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh----h----hhHHHHHHH---HHHHH
Confidence 568888899999977 4444211 222333 2237788999999998765543 1 124566666 44455
Q ss_pred HHHhh
Q 014321 145 IILQG 149 (427)
Q Consensus 145 lll~~ 149 (427)
++.+.
T Consensus 67 lis~i 71 (219)
T PF05857_consen 67 LISQI 71 (219)
T ss_pred HHHHH
Confidence 55543
No 18
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=47.77 E-value=3e+02 Score=27.54 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHh--cccCCc--hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHH
Q 014321 103 FVMPFFLFIVGVAIALAL--KKVPKI--NGAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIAL 178 (427)
Q Consensus 103 lVfP~FlFivGvSi~ls~--~r~~~k--~~~~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal 178 (427)
+.+|+.+|+=|.++.=++ ++..-. .+....+---.+..-++|+++|.. . -.+|...++--+++
T Consensus 29 ~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~-~------------~~i~~~~i~~~l~~ 95 (287)
T PF07760_consen 29 LGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYT-P------------WGIRLIPILISLSI 95 (287)
T ss_pred HHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc-c------------CCcchhHHHHHHHH
Confidence 578999999999998888 433221 123333334445667788888752 1 23555566666666
Q ss_pred HHHHHHHHHHH
Q 014321 179 VYVVVALIETL 189 (427)
Q Consensus 179 ~Yli~all~l~ 189 (427)
.-++.+++...
T Consensus 96 ~t~~~~~~a~~ 106 (287)
T PF07760_consen 96 FTLVLSIIAYI 106 (287)
T ss_pred HHHHHHHHHHH
Confidence 66666666644
No 19
>COG3619 Predicted membrane protein [Function unknown]
Probab=45.01 E-value=1.1e+02 Score=30.12 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=44.8
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhc
Q 014321 90 IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQGG 150 (427)
Q Consensus 90 l~Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRsl~LfllGlll~~~ 150 (427)
.+-++++.....+...|.+.|++|+.+.-.++|+..+ ...-.+.+...|+.+++.....
T Consensus 48 i~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 48 IELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 4466678888899999999999999998888876654 3344566777777777776543
No 20
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.65 E-value=63 Score=36.01 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=40.2
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhCCCccccccCCCchhHHHhhhhHHH
Q 014321 312 FEPEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSYVCFTADGCLG 391 (427)
Q Consensus 312 fDPEGlLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~~~~~~PiNK~LWT~SfVL~T~~G~a~ 391 (427)
.||.-++.-. ...++|+..|- ++-|++++++|+++... ..-.++.+-...+++..+ |++.
T Consensus 344 iDPT~~~ai~---f~lfFGmM~gD---------------~GyGLil~l~~~~l~~~-~~k~~~~~~~~~~il~~~-gi~s 403 (646)
T PRK05771 344 IDPTPFLAIF---FPLFFGMMLGD---------------AGYGLLLLLIGLLLSFK-LKKKSEGLKRLLKILIYL-GIST 403 (646)
T ss_pred cCCccHHHHH---HHHHHHHHHHh---------------HHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHH-HHHH
Confidence 5887765432 45567777664 33466666666655432 122344555666777777 7777
Q ss_pred HHHHhhhh
Q 014321 392 ITNSIFIP 399 (427)
Q Consensus 392 llLa~~y~ 399 (427)
++++++|-
T Consensus 404 ii~G~lyG 411 (646)
T PRK05771 404 IIWGLLTG 411 (646)
T ss_pred HHHHHHHH
Confidence 77777764
No 21
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.03 E-value=23 Score=37.54 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCc
Q 014321 211 WQWIGGFIAFVIYIITTYSLYVPNWSF 237 (427)
Q Consensus 211 ~q~~~~~~ll~~Y~~l~~~l~vP~~~~ 237 (427)
||-++....|..|.+..++-+||+|.+
T Consensus 281 ~~R~V~~~~L~~~~~~~~~~~V~~~~~ 307 (549)
T KOG4683|consen 281 WQRAVHDVCLFSGELAVLLALVATYLG 307 (549)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455666667777777777888887754
No 22
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=34.77 E-value=71 Score=25.18 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=24.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHH
Q 014321 316 GLLSTISAILSGTIGIHYGHVLIHF-KGHSARLKHWVSMGFGLLIIAIIL 364 (427)
Q Consensus 316 GlLstipAi~~~llG~~aG~~L~~~-~~~~~rl~~~l~~G~~ll~lG~ll 364 (427)
|++|.+....+.+.|+..|++=+++ ++..++=+.+...|+++..++.++
T Consensus 9 gi~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 9 GILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 3444433334555666666653322 111234445566777776666554
No 23
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=34.15 E-value=25 Score=31.68 Aligned_cols=77 Identities=13% Similarity=-0.015 Sum_probs=39.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhh-----CCCccccccCCCchhHHHhhhhHHHHHHHhhhhhccCCcccccccccc
Q 014321 340 FKGHSARLKHWVSMGFGLLIIAIILHF-----TNAIPINKQLYSFSYVCFTADGCLGITNSIFIPEMDWDECDACFRAWS 414 (427)
Q Consensus 340 ~~~~~~rl~~~l~~G~~ll~lG~ll~~-----~~~~PiNK~LWT~SfVL~T~~G~a~llLa~~y~liD~~~~~~~~~v~~ 414 (427)
.+.+++..++.+.++++..+...+... ....+.+....+....+... ..++...+++..+.+ -.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~y~~l~~ll~~---------~~~ 79 (163)
T PF04235_consen 10 PEEHRKLLRRLLLIGLAVGLPLALLSAASWLSAWPSPPAAHLSSVLYMLGGP-LLALGYVALLILLCQ---------KRP 79 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HcC
Confidence 344555555555555554333322221 11234444444444444555 667777778888888 444
Q ss_pred ccCCcceEEEec
Q 014321 415 TRYPSRICKWMV 426 (427)
Q Consensus 415 ~~~~~~~f~v~G 426 (427)
.+++..||+-.|
T Consensus 80 ~~~~~~~l~~~G 91 (163)
T PF04235_consen 80 RQRLLRPLAAVG 91 (163)
T ss_pred ccHHHHHHHHHh
Confidence 445555555444
No 24
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.78 E-value=28 Score=34.26 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=35.1
Q ss_pred cccccCCCchhHHHhhhhHHHHHHHhhhhhccCCccccccccccccCCcceEEEecC
Q 014321 371 PINKQLYSFSYVCFTADGCLGITNSIFIPEMDWDECDACFRAWSTRYPSRICKWMVL 427 (427)
Q Consensus 371 PiNK~LWT~SfVL~T~~G~a~llLa~~y~liD~~~~~~~~~v~~~~~~~~~f~v~Gm 427 (427)
+=+|++||.+.+.++. ||+.+++ +.|-+-. ....++.+-|+++.|.
T Consensus 62 ~~~k~~~~~~~i~lv~-~W~v~~f-L~y~i~~---------~~~~~~~fDPyEILGl 107 (230)
T KOG0721|consen 62 VSPKSISTKRKVFLVV-GWAVIAF-LIYKIMN---------SRRERQKFDPYEILGL 107 (230)
T ss_pred cCcccchhHHHHHHHH-HHHHHHH-HHHHHhh---------hhHHhhcCCcHHhhCC
Confidence 3456899999999999 9987766 4566666 4556677889988874
No 25
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.70 E-value=3.8e+02 Score=25.39 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=10.5
Q ss_pred CccccccCCCchhHHHhh
Q 014321 369 AIPINKQLYSFSYVCFTA 386 (427)
Q Consensus 369 ~~PiNK~LWT~SfVL~T~ 386 (427)
.+|-.-|..=+.++.+--
T Consensus 169 ~lp~~inp~l~~~~~iii 186 (206)
T PF06570_consen 169 FLPPVINPVLPPWVYIII 186 (206)
T ss_pred HccccCCcCCCHHHHHHH
Confidence 367666665555555555
No 26
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=25.52 E-value=93 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCCc--hHHHHHHHH
Q 014321 104 VMPFFLFIVGVAIALALKKVPKI--NGAVKKIIF 135 (427)
Q Consensus 104 VfP~FlFivGvSi~ls~~r~~~k--~~~~~kilr 135 (427)
.=|+|..++|++..+.++++..+ +......++
T Consensus 7 lDP~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~ 40 (47)
T PF11654_consen 7 LDPLFAVFIGTSAYYLYENREGRPEGHSLNELLR 40 (47)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCCCcHHHHHH
Confidence 34899999999999999876543 334444443
No 27
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.10 E-value=2.2e+02 Score=24.69 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=18.4
Q ss_pred CCCchhhhhHH--HHHHHHHHHHHHHHhc
Q 014321 313 EPEGLLSTISA--ILSGTIGIHYGHVLIH 339 (427)
Q Consensus 313 DPEGlLstipA--i~~~llG~~aG~~L~~ 339 (427)
.-=|++|+|.. ++.+++|+..|+||-+
T Consensus 40 ~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 40 EGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666654 4577889999998854
No 28
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=25.04 E-value=3.5e+02 Score=23.51 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH-HhhCCCccccccCCCchhHHHhhhhHHHHH
Q 014321 353 MGFGLLIIAII-LHFTNAIPINKQLYSFSYVCFTADGCLGIT 393 (427)
Q Consensus 353 ~G~~ll~lG~l-l~~~~~~PiNK~LWT~SfVL~T~~G~a~ll 393 (427)
.++++-++|++ +..+ .| ++..+.|. |..++.
T Consensus 39 ~ALv~aiiG~~~~~vn--~~-------~~~~~~~i-g~~li~ 70 (99)
T PF09877_consen 39 LALVLAIIGGLILAVN--SP-------SSPILYTI-GAFLIG 70 (99)
T ss_pred HHHHHHHHHHHHHHhc--Cc-------chhHHHHH-HHHHHh
Confidence 45566666666 5554 44 78888888 764443
No 29
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=24.63 E-value=7.8e+02 Score=25.31 Aligned_cols=53 Identities=11% Similarity=0.052 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccCccCccceecchHHHHHHHHHHHHHHHHHh
Q 014321 128 GAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLT 190 (427)
Q Consensus 128 ~~~~kilrRsl~LfllGlll~~~f~~~~~~l~~~~~~~~~Ri~GVLQrIal~Yli~all~l~~ 190 (427)
+..+|.++|....++.-++...... +.+.--.-++|+|+++....+.+.+...
T Consensus 123 ~~~r~~l~~~~~~~~pl~~~~~~~~----------~~~~~~~~d~LGrl~~ii~~~~l~~~~~ 175 (340)
T PF12794_consen 123 QRLRRQLRWLIWVLVPLLFISIFAE----------NLPDGLARDVLGRLAFIILLLLLAVFLW 175 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----------cCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4578888998888888777765311 1222334588898887776666555443
No 30
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.96 E-value=2.7e+02 Score=28.19 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccCCch-HHHHHHHHHHHHHHHHHHHHhh
Q 014321 99 TLADFVMPFFLFIVGVAIALALKKVPKIN-GAVKKIIFRTLKLLFWGIILQG 149 (427)
Q Consensus 99 t~aDlVfP~FlFivGvSi~ls~~r~~~k~-~~~~kilrRsl~LfllGlll~~ 149 (427)
.+++...|+=+|++|.++...-.+...+. .....++-|.+++=++++.+..
T Consensus 277 ~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~ 328 (385)
T PF03547_consen 277 YLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVF 328 (385)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999999876433222121 2233577888888888887643
No 31
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=22.05 E-value=1.5e+02 Score=24.73 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 014321 327 GTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAI 362 (427)
Q Consensus 327 ~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ 362 (427)
-++|+++|-.+...-....+..+++..|++..++..
T Consensus 36 Ny~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (85)
T PF06779_consen 36 NYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLST 71 (85)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 357999998876543222233344444544443333
No 32
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.07 E-value=5.4e+02 Score=22.51 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=38.5
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHH-HHHHHHHHHHhhCCCccccccCCCchhHHHh
Q 014321 312 FEPEGLLSTISAILSGTIGIHYGHVLIHFKG-----HSARLKHWVSMG-FGLLIIAIILHFTNAIPINKQLYSFSYVCFT 385 (427)
Q Consensus 312 fDPEGlLstipAi~~~llG~~aG~~L~~~~~-----~~~rl~~~l~~G-~~ll~lG~ll~~~~~~PiNK~LWT~SfVL~T 385 (427)
.+|.|++.|. .=-++|...|..+....+ ...+.....+.. +.-..+|+++.- . .+.+.-..||++++
T Consensus 24 ~~~~~~l~Ta---~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W~~a~~vG~~LR~---~-~~~~~~~~~FiiVa 96 (112)
T PF11255_consen 24 LSPAGVLRTA---WPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVWLVAVPVGMALRA---L-LFGGGPAWSFIIVA 96 (112)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHH---H-HhCCCCCcchHHHH
Confidence 4666666664 334556666655532111 122221111111 222456666643 2 45555668999999
Q ss_pred hhhHHHHHHH
Q 014321 386 ADGCLGITNS 395 (427)
Q Consensus 386 ~~G~a~llLa 395 (427)
. +...++|.
T Consensus 97 ~-~~~~vlL~ 105 (112)
T PF11255_consen 97 L-VFLAVLLL 105 (112)
T ss_pred H-HHHHHHHH
Confidence 9 76666554
No 33
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=20.99 E-value=1e+02 Score=26.51 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=7.3
Q ss_pred CccccccC
Q 014321 369 AIPINKQL 376 (427)
Q Consensus 369 ~~PiNK~L 376 (427)
..|+|++|
T Consensus 86 ~~P~N~~l 93 (139)
T PF08592_consen 86 NVPINNRL 93 (139)
T ss_pred hhHHHHHH
Confidence 59999999
No 34
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=20.98 E-value=5.8e+02 Score=22.51 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHHHHHHHHHHh
Q 014321 98 CTLADFVMPFFLFIVGVAIALALKKVP---KINGAVKKIIFRTLKLLFWGIILQ 148 (427)
Q Consensus 98 ~t~aDlVfP~FlFivGvSi~ls~~r~~---~k~~~~~kilrRsl~LfllGlll~ 148 (427)
.++.+.+...|..++|+.+.+.=-+.. +.-.......=|++..+++|.+.-
T Consensus 29 ~~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~ 82 (136)
T PF08507_consen 29 FSFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCL 82 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHH
Confidence 445589999999999998777633221 111355566779999999998764
Done!