Query 014321
Match_columns 427
No_of_seqs 187 out of 627
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 21.7 17 0.00058 24.2 -0.3 28 92-119 4-31 (31)
2 2jo1_A Phospholemman; FXYD1, N 16.8 86 0.003 24.5 2.7 30 92-121 10-39 (72)
3 1qle_C Cytochrome C oxidase po 16.0 3.9E+02 0.013 25.4 7.8 75 311-386 134-214 (273)
4 2jp3_A FXYD domain-containing 14.2 84 0.0029 24.3 2.0 30 92-121 11-40 (67)
5 1m56_C Cytochrome C oxidase; m 13.9 5.7E+02 0.019 24.1 8.3 75 311-386 127-207 (266)
6 2zxe_G FXYD10, phospholemman-l 12.1 84 0.0029 24.8 1.5 30 92-121 13-42 (74)
7 1v54_C Cytochrome C oxidase po 11.1 6.7E+02 0.023 23.5 7.8 74 311-386 123-202 (261)
8 1jb0_J Photosystem 1 reaction 10.8 1.9E+02 0.0065 20.3 2.7 21 318-338 8-28 (41)
9 3p5n_A RIBU, riboflavin uptake 9.1 9.3E+02 0.032 21.0 8.5 51 314-366 82-132 (189)
10 1pw4_A Glycerol-3-phosphate tr 8.1 6.5E+02 0.022 23.4 6.5 46 315-365 64-109 (451)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=21.66 E-value=17 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.5
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 014321 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (427)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls 119 (427)
|-+|++.....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4567777888888889999999988764
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=16.83 E-value=86 Score=24.54 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=25.9
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 014321 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (427)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (427)
|-+|+.+...-|+|-..+|++|+.+-+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 345777788899999999999999999975
No 3
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=15.95 E-value=3.9e+02 Score=25.39 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=39.6
Q ss_pred CCCCCc--hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHh---hC-CCccccccCCCchhHHH
Q 014321 311 PFEPEG--LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILH---FT-NAIPINKQLYSFSYVCF 384 (427)
Q Consensus 311 ~fDPEG--lLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~---~~-~~~PiNK~LWT~SfVL~ 384 (427)
++||-+ +++|+-=+++.+.=..|-+-+. .++++++.+.++...+++.+.-..+. +. ..+-++.+.+.++|-+.
T Consensus 134 ~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~-~~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~l 212 (273)
T 1qle_C 134 TFDPWHLPLINTLILLLSGVAVTWAHHAFV-LEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMA 212 (273)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSSCHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 456653 4555433333333233333330 23445566667766666654444442 22 24667888888888887
Q ss_pred hh
Q 014321 385 TA 386 (427)
Q Consensus 385 T~ 386 (427)
|+
T Consensus 213 TG 214 (273)
T 1qle_C 213 TG 214 (273)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.17 E-value=84 Score=24.34 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.8
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 014321 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (427)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (427)
|-+|+.+...=|+|-..+|++|+.+-+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 345777888899999999999999999975
No 5
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=13.93 E-value=5.7e+02 Score=24.10 Aligned_cols=75 Identities=17% Similarity=0.353 Sum_probs=39.5
Q ss_pred CCCCCc--hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHh---hC-CCccccccCCCchhHHH
Q 014321 311 PFEPEG--LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILH---FT-NAIPINKQLYSFSYVCF 384 (427)
Q Consensus 311 ~fDPEG--lLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~---~~-~~~PiNK~LWT~SfVL~ 384 (427)
+.||-+ +++|+-=+++.+.=..|-+-+++ ++++++.+.++...+++.+.-..+. +. ..+-++.+.+.++|-+.
T Consensus 127 ~~~~~~lpllnT~iLL~Ss~tv~~A~~a~~~-~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~l 205 (266)
T 1m56_C 127 TFDPWHLPLINTLILLCSGCAATWAHHALVH-ENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGNIYGANFFMA 205 (266)
T ss_dssp CCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSSHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 456543 45553322333333333333332 0344566667766666654444442 21 24667888999888888
Q ss_pred hh
Q 014321 385 TA 386 (427)
Q Consensus 385 T~ 386 (427)
|+
T Consensus 206 TG 207 (266)
T 1m56_C 206 TG 207 (266)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=12.13 E-value=84 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.0
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 014321 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (427)
Q Consensus 92 Ha~W~G~t~aDlVfP~FlFivGvSi~ls~~ 121 (427)
|-+|+.+...=|||-..+|++|+.+-+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 445777888899999999999999999975
No 7
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=11.11 E-value=6.7e+02 Score=23.49 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=38.8
Q ss_pred CCCCCc--hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHh---hC-CCccccccCCCchhHHH
Q 014321 311 PFEPEG--LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILH---FT-NAIPINKQLYSFSYVCF 384 (427)
Q Consensus 311 ~fDPEG--lLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~---~~-~~~PiNK~LWT~SfVL~ 384 (427)
+.||-+ +++|+--+++.+.=..|-+-++ ++++++.+.++...+++.+.-..+. +. ..+-++.+.+.++|-+.
T Consensus 123 ~~~~~~~pllnT~iLL~Ss~t~~~A~~a~~--~~~~~~~~~~L~~T~~LG~~F~~~Q~~Ey~~~~f~~~~~~ygS~ff~l 200 (261)
T 1v54_C 123 PLNPLEVPLLNTSVLLASGVSITWAHHSLM--EGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVA 200 (261)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHHHHHHH--TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHH
T ss_pred CCChHhHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 356543 4555333333333233333333 3345566666666666554444442 11 24667888888888887
Q ss_pred hh
Q 014321 385 TA 386 (427)
Q Consensus 385 T~ 386 (427)
|+
T Consensus 201 TG 202 (261)
T 1v54_C 201 TG 202 (261)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 8
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=10.78 E-value=1.9e+02 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 014321 318 LSTISAILSGTIGIHYGHVLI 338 (427)
Q Consensus 318 LstipAi~~~llG~~aG~~L~ 338 (427)
|||-|-+++..+++.||-++.
T Consensus 8 LstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 8 LSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 899999999999999997763
No 9
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=9.07 E-value=9.3e+02 Score=21.04 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 014321 314 PEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHF 366 (427)
Q Consensus 314 PEGlLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~~ 366 (427)
|-|.+.+ .++.++.|+.+|-+.++.++.++.+.-.++..+++.+.+.+++.
T Consensus 82 ~~g~~~~--~l~~~~~g~~~~~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n~ 132 (189)
T 3p5n_A 82 PVGPFAN--FLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNY 132 (189)
T ss_dssp SSHHHHH--HHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHH--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443443 45567778878866543332222222222333345666777764
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=8.13 E-value=6.5e+02 Score=23.40 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=31.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 014321 315 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILH 365 (427)
Q Consensus 315 EGlLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~ll~lG~ll~ 365 (427)
-|++.++..+...+.....|.+..+.. ++ +.+..|.++..++.++.
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g--~r---~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN--PR---VFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC--HH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC--ch---HHHHHHHHHHHHHHHHH
Confidence 478889999999988899997765432 22 34556666666665553
Done!