Query 014321
Match_columns 427
No_of_seqs 187 out of 627
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 09:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 16.0 51 0.0037 21.5 2.7 21 318-338 8-28 (41)
2 d1v54c_ f.25.1.1 (C:) Mitochon 15.7 1.7E+02 0.012 25.3 7.4 75 311-386 121-200 (259)
3 d1m56c_ f.25.1.1 (C:) Bacteria 13.0 2.2E+02 0.016 24.4 7.4 18 369-386 189-206 (265)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 7.7 4.7E+02 0.034 21.8 7.5 26 315-340 61-86 (447)
5 d3d31c1 f.58.1.1 (C:13-260) Su 6.6 2.5E+02 0.018 22.9 4.8 34 317-350 54-87 (248)
6 d1fftc_ f.25.1.1 (C:) Cytochro 6.4 2.6E+02 0.019 22.4 4.7 18 369-386 109-126 (185)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 6.0 4.9E+02 0.036 21.6 6.7 25 316-340 288-312 (447)
8 d1pv7a_ f.38.1.2 (A:) Lactose 4.7 4E+02 0.029 21.4 5.0 25 316-340 46-70 (417)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.7 3.1E+02 0.023 22.9 4.3 34 317-350 84-117 (290)
10 d1q90m_ f.23.25.1 (M:) PetM su 3.8 3.9E+02 0.029 16.0 2.9 18 321-338 10-27 (34)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=15.98 E-value=51 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 014321 318 LSTISAILSGTIGIHYGHVLI 338 (427)
Q Consensus 318 LstipAi~~~llG~~aG~~L~ 338 (427)
|||-|-+++..+++.||-++.
T Consensus 8 lstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 899999999999999997763
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.68 E-value=1.7e+02 Score=25.28 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=42.1
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHh---h-CCCccccccCCCchhHHHh
Q 014321 311 PFEPEGLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIILH---F-TNAIPINKQLYSFSYVCFT 385 (427)
Q Consensus 311 ~fDPEGlLstipAi~~~llG~~aG~~L~~-~~~~~~rl~~~l~~G~~ll~lG~ll~---~-~~~~PiNK~LWT~SfVL~T 385 (427)
+.||.++ ..+++++...-|+.+..-... +++.+++.++++...+++.++-.... + ...+-++.+.+.++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 4455543 345555555555544433322 23344556666666666655444432 1 1256788899998888887
Q ss_pred h
Q 014321 386 A 386 (427)
Q Consensus 386 ~ 386 (427)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 6
No 3
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.04 E-value=2.2e+02 Score=24.44 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.2
Q ss_pred CccccccCCCchhHHHhh
Q 014321 369 AIPINKQLYSFSYVCFTA 386 (427)
Q Consensus 369 ~~PiNK~LWT~SfVL~T~ 386 (427)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 577889999999988876
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.69 E-value=4.7e+02 Score=21.75 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=20.6
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHhcc
Q 014321 315 EGLLSTISAILSGTIGIHYGHVLIHF 340 (427)
Q Consensus 315 EGlLstipAi~~~llG~~aG~~L~~~ 340 (427)
-|++.++..+..++.....|.+.-+.
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37888888888888888888776543
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=6.64 E-value=2.5e+02 Score=22.85 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=24.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014321 317 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHW 350 (427)
Q Consensus 317 lLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~ 350 (427)
.++.++++.++++|+..+..+.+.+.+.+|..+.
T Consensus 54 ~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~ 87 (248)
T d3d31c1 54 YAGFLATLLALLLGAPTGYILARFDFPGKRLVES 87 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 4677788888899999998886655444554444
No 6
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=6.35 E-value=2.6e+02 Score=22.39 Aligned_cols=18 Identities=0% Similarity=0.169 Sum_probs=14.4
Q ss_pred CccccccCCCchhHHHhh
Q 014321 369 AIPINKQLYSFSYVCFTA 386 (427)
Q Consensus 369 ~~PiNK~LWT~SfVL~T~ 386 (427)
.+..+-+.+.+.|-++|+
T Consensus 109 g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 109 GMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp SCSCCCCSTTTHHHHHHH
T ss_pred ccccccccchhhHHHHHH
Confidence 477888899888877775
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.96 E-value=4.9e+02 Score=21.60 Aligned_cols=25 Identities=4% Similarity=-0.178 Sum_probs=14.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 014321 316 GLLSTISAILSGTIGIHYGHVLIHF 340 (427)
Q Consensus 316 GlLstipAi~~~llG~~aG~~L~~~ 340 (427)
+.+.++..+..++..+.+|.+..+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhc
Confidence 4566666666666666666655443
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.72 E-value=4e+02 Score=21.38 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=20.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 014321 316 GLLSTISAILSGTIGIHYGHVLIHF 340 (427)
Q Consensus 316 GlLstipAi~~~llG~~aG~~L~~~ 340 (427)
|++.++..+...+.....|.+.-+.
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999877543
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.70 E-value=3.1e+02 Score=22.87 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 014321 317 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKHW 350 (427)
Q Consensus 317 lLstipAi~~~llG~~aG~~L~~~~~~~~rl~~~ 350 (427)
+++.+.++.++++|+.++..+.+.+...++....
T Consensus 84 ~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~~ 117 (290)
T d2r6gg1 84 KVAGISAIGIVALSTTCAYAFARMRFPGKATLLK 117 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHHH
Confidence 3566678888999999999997666555554433
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.82 E-value=3.9e+02 Score=16.02 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 014321 321 ISAILSGTIGIHYGHVLI 338 (427)
Q Consensus 321 ipAi~~~llG~~aG~~L~ 338 (427)
++-|..+++|+..|-+|.
T Consensus 10 ~tmig~tl~glaigfvll 27 (34)
T d1q90m_ 10 LTMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 444566677777776664
Done!