Query 014323
Match_columns 427
No_of_seqs 530 out of 2923
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 3.5E-72 7.5E-77 583.5 25.4 375 12-410 242-619 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 3.9E-45 8.4E-50 356.1 24.9 250 68-325 178-427 (536)
3 PLN03192 Voltage-dependent pot 100.0 2E-44 4.3E-49 394.9 33.3 275 16-323 214-488 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.2E-40 4.9E-45 326.2 12.8 270 33-321 389-658 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.4E-39 1.2E-43 317.3 17.5 242 71-322 401-642 (815)
6 PRK09392 ftrB transcriptional 99.8 4E-18 8.7E-23 160.5 17.6 184 197-409 6-202 (236)
7 PRK11753 DNA-binding transcrip 99.7 3.9E-16 8.4E-21 144.2 20.3 173 207-408 6-196 (211)
8 PRK11161 fumarate/nitrate redu 99.7 2.1E-16 4.5E-21 148.7 18.0 180 200-409 15-213 (235)
9 PRK10402 DNA-binding transcrip 99.7 1.2E-15 2.5E-20 142.9 16.8 174 214-417 24-208 (226)
10 PRK09391 fixK transcriptional 99.6 1.9E-14 4.1E-19 135.1 14.4 170 216-417 33-219 (230)
11 COG0664 Crp cAMP-binding prote 99.6 1.3E-13 2.8E-18 126.6 18.5 167 201-396 3-181 (214)
12 TIGR03697 NtcA_cyano global ni 99.6 9.9E-14 2.1E-18 126.2 15.4 85 229-322 1-86 (193)
13 cd00038 CAP_ED effector domain 99.5 3.4E-13 7.3E-18 110.5 13.5 107 205-322 1-108 (115)
14 PF00027 cNMP_binding: Cyclic 99.5 2.4E-13 5.3E-18 107.4 11.1 89 224-322 2-90 (91)
15 PRK13918 CRP/FNR family transc 99.5 8.2E-13 1.8E-17 121.2 15.9 173 220-417 5-188 (202)
16 smart00100 cNMP Cyclic nucleot 99.4 4.7E-12 1E-16 104.2 13.5 109 205-322 1-110 (120)
17 KOG0614 cGMP-dependent protein 99.4 8E-13 1.7E-17 131.3 8.0 130 195-335 269-399 (732)
18 PLN02868 acyl-CoA thioesterase 99.3 1E-11 2.2E-16 126.6 13.4 113 197-322 7-119 (413)
19 COG2905 Predicted signal-trans 99.3 4.5E-11 9.8E-16 120.4 14.1 112 197-322 6-117 (610)
20 KOG1113 cAMP-dependent protein 99.3 1.1E-11 2.3E-16 118.3 7.5 110 197-321 121-230 (368)
21 KOG0614 cGMP-dependent protein 99.2 2E-11 4.4E-16 121.4 7.1 117 190-321 146-262 (732)
22 PF07885 Ion_trans_2: Ion chan 99.0 5.1E-10 1.1E-14 86.9 7.0 57 71-127 22-78 (79)
23 KOG1113 cAMP-dependent protein 99.0 8.9E-10 1.9E-14 105.3 7.3 117 191-321 233-349 (368)
24 KOG3713 Voltage-gated K+ chann 98.5 9.8E-08 2.1E-12 95.5 4.7 62 71-132 375-436 (477)
25 KOG1419 Voltage-gated K+ chann 98.3 1E-06 2.2E-11 88.8 7.1 92 67-165 263-354 (654)
26 PRK10537 voltage-gated potassi 98.3 1.8E-06 4E-11 87.0 7.9 56 71-126 166-221 (393)
27 KOG2968 Predicted esterase of 98.0 4.3E-06 9.3E-11 88.6 4.6 120 192-322 471-599 (1158)
28 KOG1418 Tandem pore domain K+ 97.8 4.4E-05 9.6E-10 77.6 7.3 60 73-132 115-174 (433)
29 PF04831 Popeye: Popeye protei 97.7 0.003 6.4E-08 54.3 16.0 104 208-321 14-119 (153)
30 PRK11832 putative DNA-binding 97.7 0.0025 5.3E-08 58.2 15.8 108 213-352 14-122 (207)
31 KOG3684 Ca2+-activated K+ chan 97.6 0.00023 5E-09 70.9 9.0 92 70-169 284-375 (489)
32 KOG1545 Voltage-gated shaker-l 97.6 1.6E-06 3.6E-11 83.1 -5.6 56 69-124 389-444 (507)
33 KOG1420 Ca2+-activated K+ chan 97.6 3E-05 6.4E-10 78.6 2.7 137 72-216 287-428 (1103)
34 KOG2968 Predicted esterase of 97.5 0.00079 1.7E-08 71.9 10.8 101 218-322 112-213 (1158)
35 KOG4390 Voltage-gated A-type K 97.2 6.1E-05 1.3E-09 73.1 -0.8 62 67-128 350-415 (632)
36 PF00520 Ion_trans: Ion transp 97.0 0.00085 1.9E-08 60.2 4.4 56 67-122 139-200 (200)
37 KOG3542 cAMP-regulated guanine 96.7 0.0052 1.1E-07 63.9 7.8 115 194-322 277-392 (1283)
38 PF01007 IRK: Inward rectifier 96.6 0.0031 6.8E-08 62.3 5.6 60 71-130 82-143 (336)
39 KOG4404 Tandem pore domain K+ 96.5 0.0033 7.2E-08 60.2 4.7 58 73-130 186-251 (350)
40 KOG4404 Tandem pore domain K+ 96.4 0.00089 1.9E-08 64.0 0.2 52 68-119 75-126 (350)
41 KOG1418 Tandem pore domain K+ 95.6 0.004 8.7E-08 63.1 0.7 48 72-119 241-296 (433)
42 KOG3542 cAMP-regulated guanine 94.2 0.084 1.8E-06 55.2 5.7 104 184-310 23-126 (1283)
43 KOG3193 K+ channel subunit [In 90.1 0.068 1.5E-06 54.6 -0.8 40 74-113 218-257 (1087)
44 PF07883 Cupin_2: Cupin domain 81.7 2.9 6.3E-05 30.5 4.5 45 224-275 3-48 (71)
45 PF00060 Lig_chan: Ligand-gate 79.0 3.4 7.5E-05 35.0 4.7 60 69-129 40-99 (148)
46 PRK13290 ectC L-ectoine syntha 77.8 11 0.00025 31.6 7.3 68 223-309 39-106 (125)
47 KOG3827 Inward rectifier K+ ch 76.3 3.3 7.2E-05 41.1 4.1 59 71-129 110-170 (400)
48 COG4709 Predicted membrane pro 72.0 17 0.00037 32.6 7.1 70 140-211 7-80 (195)
49 TIGR03037 anthran_nbaC 3-hydro 68.2 13 0.00027 32.7 5.4 63 233-313 43-105 (159)
50 PF08006 DUF1700: Protein of u 68.0 26 0.00056 31.2 7.7 55 139-195 6-64 (181)
51 PF05899 Cupin_3: Protein of u 67.5 11 0.00023 28.4 4.4 42 226-275 14-55 (74)
52 KOG3676 Ca2+-permeable cation 62.3 33 0.00071 37.5 8.2 75 86-161 601-682 (782)
53 PF10011 DUF2254: Predicted me 61.6 41 0.00089 33.9 8.5 62 69-130 96-157 (371)
54 PF13314 DUF4083: Domain of un 59.9 52 0.0011 23.5 6.2 46 100-148 5-56 (58)
55 PRK13264 3-hydroxyanthranilate 59.7 22 0.00047 31.8 5.4 62 237-315 52-113 (177)
56 PF14377 DUF4414: Domain of un 55.4 16 0.00034 29.8 3.6 44 151-194 52-105 (108)
57 PHA03029 hypothetical protein; 55.3 69 0.0015 24.1 6.5 52 97-148 2-57 (92)
58 COG0662 {ManC} Mannose-6-phosp 53.6 38 0.00082 28.3 5.8 49 220-275 37-86 (127)
59 PF07697 7TMR-HDED: 7TM-HD ext 51.0 87 0.0019 28.4 8.4 32 209-240 174-207 (222)
60 PF02037 SAP: SAP domain; Int 50.5 32 0.0007 21.8 3.7 26 139-164 5-35 (35)
61 COG1917 Uncharacterized conser 46.9 39 0.00085 28.1 4.9 51 221-278 45-96 (131)
62 smart00835 Cupin_1 Cupin. This 46.1 52 0.0011 28.0 5.6 54 221-276 32-87 (146)
63 PF13623 SurA_N_2: SurA N-term 39.7 80 0.0017 27.2 5.7 46 104-149 9-67 (145)
64 PRK09108 type III secretion sy 39.2 91 0.002 31.2 6.8 69 94-162 173-241 (353)
65 PF12973 Cupin_7: ChrR Cupin-l 37.5 1.1E+02 0.0023 23.7 5.7 64 220-308 25-88 (91)
66 TIGR03404 bicupin_oxalic bicup 34.6 93 0.002 31.3 6.1 51 222-275 70-121 (367)
67 PRK04190 glucose-6-phosphate i 34.5 1.6E+02 0.0035 26.7 7.0 40 234-275 92-131 (191)
68 PF13174 TPR_6: Tetratricopept 33.6 99 0.0022 18.0 4.0 19 364-382 14-32 (33)
69 PHA02909 hypothetical protein; 33.3 47 0.001 23.5 2.6 41 84-127 13-53 (72)
70 PRK12721 secretion system appa 32.6 1.2E+02 0.0025 30.4 6.3 68 96-163 173-240 (349)
71 PF12583 TPPII_N: Tripeptidyl 32.4 1.2E+02 0.0025 25.9 5.2 25 361-385 87-111 (139)
72 KOG4484 Uncharacterized conser 32.0 1.6E+02 0.0035 26.0 6.1 38 129-166 22-59 (199)
73 PRK08156 type III secretion sy 31.8 1E+02 0.0022 30.9 5.8 68 96-163 168-235 (361)
74 TIGR02272 gentisate_1_2 gentis 31.8 1.5E+02 0.0033 29.4 6.9 77 224-321 255-331 (335)
75 PF00190 Cupin_1: Cupin; Inte 31.3 2.6E+02 0.0057 23.5 7.7 55 222-277 37-97 (144)
76 COG4792 EscU Type III secretor 31.2 2.9E+02 0.0062 27.0 8.3 75 83-163 166-241 (349)
77 PRK11171 hypothetical protein; 31.0 1.3E+02 0.0028 28.7 6.2 49 220-275 185-234 (266)
78 PRK13109 flhB flagellar biosyn 30.5 1.3E+02 0.0029 30.1 6.4 66 97-162 183-248 (358)
79 PRK05702 flhB flagellar biosyn 29.9 1.2E+02 0.0025 30.6 5.8 68 95-162 179-246 (359)
80 PF02285 COX8: Cytochrome oxid 29.6 1.5E+02 0.0031 20.1 4.3 32 94-125 8-40 (44)
81 PRK12468 flhB flagellar biosyn 29.3 1.2E+02 0.0025 30.9 5.7 68 95-162 179-246 (386)
82 TIGR00328 flhB flagellar biosy 28.7 1.5E+02 0.0032 29.6 6.3 66 97-162 174-239 (347)
83 TIGR03404 bicupin_oxalic bicup 28.4 1.3E+02 0.0028 30.3 5.9 51 222-275 248-300 (367)
84 TIGR01404 FlhB_rel_III type II 27.5 1.6E+02 0.0035 29.3 6.4 67 97-163 173-239 (342)
85 KOG2568 Predicted membrane pro 26.7 3E+02 0.0065 29.0 8.2 47 77-124 282-328 (518)
86 COG3837 Uncharacterized conser 26.2 91 0.002 27.3 3.7 35 237-278 62-96 (161)
87 PF13545 HTH_Crp_2: Crp-like h 26.0 30 0.00064 25.6 0.7 29 395-423 2-31 (76)
88 PF01484 Col_cuticle_N: Nemato 25.4 2.2E+02 0.0048 19.3 6.6 40 103-142 9-48 (53)
89 smart00513 SAP Putative DNA-bi 25.2 1E+02 0.0022 19.3 3.0 25 140-164 6-35 (35)
90 PF08916 Phe_ZIP: Phenylalanin 24.6 2.8E+02 0.006 20.1 5.4 50 353-402 2-51 (59)
91 PF13525 YfiO: Outer membrane 24.6 2.7E+02 0.0057 25.1 6.9 64 311-385 110-176 (203)
92 PF08763 Ca_chan_IQ: Voltage g 24.1 1.2E+02 0.0026 19.5 3.0 21 344-364 9-29 (35)
93 PRK11171 hypothetical protein; 23.6 1.7E+02 0.0037 27.9 5.5 47 222-275 64-112 (266)
94 KOG0498 K+-channel ERG and rel 22.6 7E+02 0.015 27.7 10.4 44 180-223 370-418 (727)
95 PF14841 FliG_M: FliG middle d 22.6 95 0.0021 23.6 2.9 40 177-224 30-69 (79)
96 PRK09943 DNA-binding transcrip 22.4 1.7E+02 0.0037 25.9 5.1 31 238-275 127-157 (185)
97 PF00612 IQ: IQ calmodulin-bin 22.3 1.3E+02 0.0027 16.4 2.6 17 346-362 3-19 (21)
98 KOG2378 cAMP-regulated guanine 21.6 87 0.0019 32.2 3.1 43 270-321 1-44 (573)
99 PF06249 EutQ: Ethanolamine ut 21.6 1.4E+02 0.0031 26.0 4.1 50 239-309 95-144 (152)
100 TIGR02451 anti_sig_ChrR anti-s 21.5 2E+02 0.0044 26.4 5.4 70 220-314 128-199 (215)
101 PRK11161 fumarate/nitrate redu 21.5 2.3E+02 0.005 25.8 5.9 31 392-422 156-186 (235)
102 PRK12772 bifunctional flagella 21.3 2.1E+02 0.0047 30.9 6.3 66 97-162 437-502 (609)
103 TIGR02523 type_IV_pilV type IV 21.3 4.9E+02 0.011 22.2 7.3 25 96-120 4-28 (139)
104 PRK06298 type III secretion sy 21.1 2.6E+02 0.0055 28.1 6.4 62 102-163 180-241 (356)
105 PRK14663 acpS 4'-phosphopantet 20.9 1.6E+02 0.0034 24.2 4.1 12 388-399 39-50 (116)
106 smart00511 ORANGE Orange domai 20.9 2.6E+02 0.0057 18.5 4.8 36 134-169 5-41 (45)
107 PRK14660 acpS 4'-phosphopantet 20.7 1.5E+02 0.0033 24.6 4.1 12 388-399 45-56 (125)
108 PF01843 DIL: DIL domain; Int 20.6 3.3E+02 0.0071 21.6 5.9 74 131-223 28-101 (105)
109 PRK10866 outer membrane biogen 20.4 3.7E+02 0.0079 25.1 7.1 67 310-387 143-212 (243)
110 COG1422 Predicted membrane pro 20.2 5E+02 0.011 23.7 7.3 38 112-149 50-90 (201)
111 PRK12773 flhB flagellar biosyn 20.0 3.5E+02 0.0077 29.2 7.3 65 98-162 473-537 (646)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-72 Score=583.54 Aligned_cols=375 Identities=34% Similarity=0.589 Sum_probs=328.4
Q ss_pred HHhcCCCCCccceeecCCC--CCcc-ccccccCCCCCCCCCCCCchhhHHHHhcCccCCcchHHHHHHHHHHHhhhcccc
Q 014323 12 KACREHTECYQNSFHCYET--VGNY-TFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCA 88 (427)
Q Consensus 12 ~~~~~~~~c~~~~~~c~~~--~~~~-~w~~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Y~~slyw~~~tlttv 88 (427)
--+.|-.||.++.++-... -... +|+.++|..-...+..|+||+|.+|+ ||+|||||+++||||+
T Consensus 242 ~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~------------kY~~aLyw~l~tLstv 309 (727)
T KOG0498|consen 242 LLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLAL------------KYVYALYWGLSTLSTV 309 (727)
T ss_pred HHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHH------------HHHHHHHHHhhHhhhc
Confidence 3334456777766665542 1223 78877541101133448899888755 9999999999999999
Q ss_pred cCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 014323 89 GQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVW 168 (427)
Q Consensus 89 Gygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w 168 (427)
|||+++|++..|++|+|++|++|+++||++||||++++|+++++.++|+.+++++++||++|+||++||+||++|++|+|
T Consensus 310 G~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw 389 (727)
T KOG0498|consen 310 GYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKW 389 (727)
T ss_pred cCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEee
Q 014323 169 QEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQG 248 (427)
Q Consensus 169 ~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G 248 (427)
..++|+||+++|++||++||+||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|
T Consensus 390 ~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG 469 (727)
T KOG0498|consen 390 LATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRG 469 (727)
T ss_pred hhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhh
Q 014323 249 TLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHN 328 (427)
Q Consensus 249 ~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~ 328 (427)
.+++...++|.+ .++..+++||+|||..+.|+++- |+++||+|+|.|+++.|+++||..++++| +++++
T Consensus 470 ~le~~~~~~g~~--~~~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f--~~~~~ 538 (727)
T KOG0498|consen 470 SLESITTDGGGF--FVVAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQF--RRLGS 538 (727)
T ss_pred eEEEEEccCCce--EEEEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHh--HHHHH
Confidence 999999887744 45799999999997777788731 23889999999999999999999999999 89999
Q ss_pred hchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHhhhcCCCCCchhhHHHHhHHHHHHHHHHHhhC
Q 014323 329 MQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNG 408 (427)
Q Consensus 329 ~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~~~p~~~~~~~~~~~AS~~~~~~~~~~~~~~ 408 (427)
+++++++++||++||+|+++++|.+|+++.+|+........ +.....-...++..+.+.....|+++|++.++.++.+.
T Consensus 539 ~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 617 (727)
T KOG0498|consen 539 KFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALE-EEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAA 617 (727)
T ss_pred HHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhh-cchhhhccccccchhhhhcccccccccccCCCcccccc
Confidence 99999999999999999999999999999998877644443 22222222566778889999999999999999988765
Q ss_pred CC
Q 014323 409 GL 410 (427)
Q Consensus 409 ~~ 410 (427)
.+
T Consensus 618 ~~ 619 (727)
T KOG0498|consen 618 SR 619 (727)
T ss_pred cc
Confidence 44
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-45 Score=356.10 Aligned_cols=250 Identities=23% Similarity=0.381 Sum_probs=235.4
Q ss_pred cchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 014323 68 KAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWR 147 (427)
Q Consensus 68 ~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m 147 (427)
..+..+|++|+||+..||||+|. ..+|.++.|.+|.|+-.++|+++||.|+|+|++++.++++...+|+.+|+.+++||
T Consensus 178 ~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM 256 (536)
T KOG0500|consen 178 GNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYM 256 (536)
T ss_pred hHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999995 77899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeec
Q 014323 148 TFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYV 227 (427)
Q Consensus 148 ~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~ 227 (427)
+.|++|+.|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|..+++.+.|+++++|++..+.++.++...+++..|.
T Consensus 257 ~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfS 336 (536)
T KOG0500|consen 257 RYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFS 336 (536)
T ss_pred HHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEE
Q 014323 228 QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 307 (427)
Q Consensus 228 kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll 307 (427)
|||+|++.||.+.+||+|.+|.+++...|++.. ...+++|++|||.++++--.. .++.+++++|+++..++++
T Consensus 337 PgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIlni~g~---~~gNRRtanvrSvGYSDlf 409 (536)
T KOG0500|consen 337 PGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILNIKGN---KNGNRRTANVRSVGYSDLF 409 (536)
T ss_pred CCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEEEcCc---ccCCcceeeeeeeccceee
Confidence 999999999999999999999999998666543 578999999999998754332 3667889999999999999
Q ss_pred EecHHHHHHHHHHchhhh
Q 014323 308 AINTDDLRAIVYQYWQHR 325 (427)
Q Consensus 308 ~i~~~df~~ll~~~P~~~ 325 (427)
+|+++|+.+++++||+.+
T Consensus 410 vLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 410 VLSKDDLWEALSEYPDAR 427 (536)
T ss_pred EeeHHHHHHHHHhCCHHH
Confidence 999999999999998544
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2e-44 Score=394.89 Aligned_cols=275 Identities=16% Similarity=0.245 Sum_probs=246.5
Q ss_pred CCCCCccceeecCCCCCccccccccCCCCCCCCCCCCchhhHHHHhcCccCCcchHHHHHHHHHHHhhhcccccCCCccc
Q 014323 16 EHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTS 95 (427)
Q Consensus 16 ~~~~c~~~~~~c~~~~~~~~w~~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Y~~slyw~~~tlttvGygdi~~ 95 (427)
+..+|.+++++......+.+|+...=. ...+.+++.+|++|+||+++|||||||||++|
T Consensus 214 H~~aC~~y~i~~~~~~~~~~Wi~~~~~---------------------~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p 272 (823)
T PLN03192 214 HCAGCLYYLIADRYPHQGKTWIGAVIP---------------------NFRETSLWIRYISAIYWSITTMTTVGYGDLHA 272 (823)
T ss_pred HHHHHHHHHHHhhcCCCCCchHHHhhh---------------------ccccCcHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 345788766654443344577664211 12367899999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhccc
Q 014323 96 THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGID 175 (427)
Q Consensus 96 ~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~ 175 (427)
.|..|++|++++|++|+++|||+||+|++++.+.+.+..+|+++++.+++||++++||+.||.||++|+++.|.. .+.+
T Consensus 273 ~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~ 351 (823)
T PLN03192 273 VNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLN 351 (823)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 5688
Q ss_pred hhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEe
Q 014323 176 VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 255 (427)
Q Consensus 176 e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~ 255 (427)
++++++.||+.||.+|..+++.++++++++|++++++++..++..++++.|+|||.|+.+||+++++|||.+|.|+++..
T Consensus 352 ~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~ 431 (823)
T PLN03192 352 QQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS 431 (823)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchh
Q 014323 256 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQ 323 (427)
Q Consensus 256 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~ 323 (427)
+++++.+ +..+++|++|||.+++ . ..+++.+++|.++|+++.|++++|.++++++|+
T Consensus 432 ~~~~e~~--l~~l~~Gd~FGE~~~l-~--------~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 432 EGEKERV--VGTLGCGDIFGEVGAL-C--------CRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred cCCccee--eEEccCCCEecchHHh-c--------CCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 6666655 6799999999999886 2 234588999999999999999999999999963
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=326.19 Aligned_cols=270 Identities=17% Similarity=0.303 Sum_probs=246.5
Q ss_pred ccccccccCCCCCCCCCCCCchhhHHHHhcCccCCcchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHH
Q 014323 33 NYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASL 112 (427)
Q Consensus 33 ~~~w~~~~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~ 112 (427)
..+||..+.. +.+.+|+|..-..- ..+.++|--+.|+.|+||.++.|||||+|+|.|.|+.|++|++++|++|.
T Consensus 389 ~dsWL~kLa~---~~~tpY~~~~s~~~---~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~a 462 (971)
T KOG0501|consen 389 PDSWLWKLAN---DIGTPYNYNLSNKG---TLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGA 462 (971)
T ss_pred cchHHHHHHh---hcCCCceeccCCCc---eeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHH
Confidence 3589998876 46677877621111 12356888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHH
Q 014323 113 LLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMK 192 (427)
Q Consensus 113 ~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~ 192 (427)
++||.++|+|+.|+|++.+...+|++.++.+.+||+-.++|+.|.+||..|.-..|..++|+|.+++|.-.|.+++.||+
T Consensus 463 LLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADIC 542 (971)
T KOG0501|consen 463 LLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADIC 542 (971)
T ss_pred HHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCcccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCC
Q 014323 193 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGD 272 (427)
Q Consensus 193 ~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd 272 (427)
.|+..+.+...|.|+-.++..+++++..++..+..|||.|++.|+.++.+.||++|.+++...|+- +++++.||
T Consensus 543 VHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------VAILGKGD 616 (971)
T KOG0501|consen 543 VHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------VAILGKGD 616 (971)
T ss_pred eecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------EEEeecCc
Confidence 999999999999999999999999999999999999999999999999999999999999985532 68999999
Q ss_pred eechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc
Q 014323 273 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 273 ~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~ 321 (427)
+||+.. |... ....+.++|+|++.|.+..|.++.+.++++-|
T Consensus 617 VFGD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 617 VFGDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred cchhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 999986 4322 33456889999999999999999999999999
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-39 Score=317.33 Aligned_cols=242 Identities=20% Similarity=0.371 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFE 150 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~ 150 (427)
-.-|+.|+||++.|++|+| |+..|.+..|++|..+--+.|+++|+.+||.|-.++...+.+.++|+..|++.-.||+..
T Consensus 401 Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~ 479 (815)
T KOG0499|consen 401 GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNY 479 (815)
T ss_pred CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999 788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCc
Q 014323 151 MLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQEC 230 (427)
Q Consensus 151 ~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge 230 (427)
+||++.+.||+.+|+|.|...+..||.++++.||..|+.|+...++...|.++.+|++++.+.+..+..+++.+.|-|||
T Consensus 480 ~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgD 559 (815)
T KOG0499|consen 480 SIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGD 559 (815)
T ss_pred CCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEec
Q 014323 231 CIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 310 (427)
Q Consensus 231 ~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~ 310 (427)
+|++.||++.+||+|..|.|.+....+|.. ++..|.+|++|||++++ +. ....+++++|+|...|.+++|+
T Consensus 560 fVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~GsVFGEISLL-ai-----gG~nRRTAnV~a~Gf~nLfvL~ 630 (815)
T KOG0499|consen 560 FVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAGSVFGEISLL-AI-----GGGNRRTANVVAHGFANLFVLD 630 (815)
T ss_pred eeeecccccceeEEeecceEEEecCCCCCE---EEEEecccceeeeeeee-ee-----cCCCccchhhhhcccceeeEec
Confidence 999999999999999999999998776664 36899999999999987 22 2344789999999999999999
Q ss_pred HHHHHHHHHHch
Q 014323 311 TDDLRAIVYQYW 322 (427)
Q Consensus 311 ~~df~~ll~~~P 322 (427)
++|+.+++..||
T Consensus 631 KkdLneil~~YP 642 (815)
T KOG0499|consen 631 KKDLNEILVHYP 642 (815)
T ss_pred HhHHHHHHHhCc
Confidence 999999999996
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.79 E-value=4e-18 Score=160.50 Aligned_cols=184 Identities=12% Similarity=0.130 Sum_probs=148.3
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
.++++.+|+|..++++.++.+....+.+.|++|+.|+++||+++++|||.+|.++++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 468899999999999999999999999999999999999999999999999999999877676654 689999999999
Q ss_pred hhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHH
Q 014323 277 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCR 356 (427)
Q Consensus 277 ~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~ 356 (427)
.+++ ...++..+++|+++|+++.|++++|.+++.++ +.+..+....+...+..
T Consensus 84 ~~~~---------~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~------------------p~l~~~~~~~l~~~~~~ 136 (236)
T PRK09392 84 AAVV---------LDAPYLMSARTLTRSRVLMIPAELVREAMSED------------------PGFMRAVVFELAGCYRG 136 (236)
T ss_pred HHHh---------CCCCCceEEEEcCceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHH
Confidence 9865 22346889999999999999999999999999 34444444455555666
Q ss_pred HHHHHhhhhHHHHHhhhHHHhhhc-----CCCCCchhh--HHHHhHHH------HHHHHHHHhhCC
Q 014323 357 YKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFGT--AIYATQFF------TYVRRSVKRNGG 409 (427)
Q Consensus 357 ~~~r~~~~~~~~aeery~~~~~~~-----p~~~~~~~~--~~~AS~~~------~~~~~~~~~~~~ 409 (427)
..++.......++++|+..++... ++...++|+ .+||+.+. ..+++-+++.|.
T Consensus 137 ~~~~~~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L~~~gl 202 (236)
T PRK09392 137 LVKSLKNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAALASHGV 202 (236)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHHHhCCe
Confidence 777888888899999999877542 233456675 66998774 334445555553
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.73 E-value=3.9e-16 Score=144.23 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=135.0
Q ss_pred ccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCC
Q 014323 207 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 285 (427)
Q Consensus 207 ~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p 285 (427)
++++++.++.++..++.+.|++|++|+.+|++++.+|||.+|.++++..+ +|++.. +.++.+|++||+..++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~---- 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE---- 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhcc----
Confidence 47899999999999999999999999999999999999999999999765 566654 67999999999988651
Q ss_pred CCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccch-hhhHHHHHHHHHHHHHHHHhhh
Q 014323 286 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEW-RTSKACVIQAAWCRYKKRKLEG 364 (427)
Q Consensus 286 ~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~-~~~~~~~~q~~~~~~~~r~~~~ 364 (427)
..+++..+++|.++|+++.|++++|.+++.++| .+ ..+.+.+.+.. ....++....
T Consensus 80 ----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~~~~~~~~~l-~~~~~~~~~~ 136 (211)
T PRK11753 80 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNP------------------DILMALSAQMARRL-QNTSRKVGDL 136 (211)
T ss_pred ----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCH------------------HHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 122457899999999999999999999999993 33 23344444444 4456677778
Q ss_pred hHHHHHhhhHHHhh---hcC------C-CCCchhhHHHHhHHH------HHHHHHHHhhC
Q 014323 365 SLYAKENILQDQKA---EAG------G-KPSKFGTAIYATQFF------TYVRRSVKRNG 408 (427)
Q Consensus 365 ~~~~aeery~~~~~---~~p------~-~~~~~~~~~~AS~~~------~~~~~~~~~~~ 408 (427)
.+.++++|+..++. +.| + +..+++++.||+.+. ..+++.+++.|
T Consensus 137 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~~g 196 (211)
T PRK11753 137 AFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLEDQG 196 (211)
T ss_pred HhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 88999999876542 222 2 335788999999884 33455555555
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.72 E-value=2.1e-16 Score=148.68 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=138.8
Q ss_pred hhcCcccccCCHHHHHHHHhhccc-eeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechh
Q 014323 200 LKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEE 277 (427)
Q Consensus 200 L~~v~~F~~l~~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~ 277 (427)
+++.+.|..+++++++.|...... +.|+||+.|+++||+++++|||.+|.|+++..+ +|++.+ +.++.||++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555667999999999988864 689999999999999999999999999999865 566655 5788999999986
Q ss_pred hhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHH
Q 014323 278 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 357 (427)
Q Consensus 278 ~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~ 357 (427)
.++ .. .+..+++|+++|+++.|++++|.+++..+ |.+.......+.......
T Consensus 93 ~~~--~~--------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 144 (235)
T PRK11161 93 AIG--SG--------QHPSFAQALETSMVCEIPFETLDDLSGKM------------------PKLRQQIMRLMSGEIKGD 144 (235)
T ss_pred ccc--CC--------CCcceEEEeccEEEEEEEHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHH
Confidence 542 11 22458999999999999999999999999 444444444444555566
Q ss_pred HHHHhhhhHHHHHhhhHHHhhhcCC-----------CCCchhhHHHHhHHH------HHHHHHHHhhCC
Q 014323 358 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQFF------TYVRRSVKRNGG 409 (427)
Q Consensus 358 ~~r~~~~~~~~aeery~~~~~~~p~-----------~~~~~~~~~~AS~~~------~~~~~~~~~~~~ 409 (427)
.++...+...++++|+.+++.+.++ +...+++.+||+.+. ..+++.+++.|-
T Consensus 145 ~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~ 213 (235)
T PRK11161 145 QEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGM 213 (235)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHHCCC
Confidence 7777777888999999988876432 224678899999874 455666677763
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.68 E-value=1.2e-15 Score=142.91 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=127.3
Q ss_pred HHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCC
Q 014323 214 LSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIP 292 (427)
Q Consensus 214 l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~ 292 (427)
...|....+.+.|++|++|+.+||+++.+|||.+|.|+++..+ +|++.+ +.++.||++||+..++ ...
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---------~~~ 92 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---------DKD 92 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---------cCC
Confidence 3457778899999999999999999999999999999999765 566655 5799999999998764 223
Q ss_pred CcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014323 293 HSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENI 372 (427)
Q Consensus 293 ~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeer 372 (427)
+++.+++|+++|+++.+++++|.+++..+| . -+..+.+.+.. ...+...+.......++++|
T Consensus 93 ~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p--~---------------~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~R 154 (226)
T PRK10402 93 HETKAVQAIEECWCLALPMKDCRPLLLNDA--L---------------FLRKLCKFLSH-KNYRNIVSLTQNQSFPLENR 154 (226)
T ss_pred CCCccEEEeccEEEEEEEHHHHHHHHhcCH--H---------------HHHHHHHHHHH-HHHHHHHHHHHhccChHHHH
Confidence 568899999999999999999999999994 1 12222222322 22333444554556689999
Q ss_pred hHHHhhhc--CCCCCchhhHHHHhHHH------HHHHHHHHhhC--CCCCCcccc
Q 014323 373 LQDQKAEA--GGKPSKFGTAIYATQFF------TYVRRSVKRNG--GLPGGRVNI 417 (427)
Q Consensus 373 y~~~~~~~--p~~~~~~~~~~~AS~~~------~~~~~~~~~~~--~~~~~~~~~ 417 (427)
+.+++... ++. ...++..||+.+. ..+|..+++.| ...+++|.|
T Consensus 155 la~~L~~~~~~~~-~~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I 208 (226)
T PRK10402 155 LAAFILLTQEGDL-YHEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLI 208 (226)
T ss_pred HHHHHHhcccCCc-ccchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEE
Confidence 98887642 222 2357899999986 34566667777 333444555
No 10
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.59 E-value=1.9e-14 Score=135.13 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=130.4
Q ss_pred HHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCc
Q 014323 216 EMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHS 294 (427)
Q Consensus 216 ~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s 294 (427)
.++...+.+.|++|++|+.+||+++++|||.+|.|+++..+ +|++.+ +.++.+|++||+.. . .++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~--------~~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----G--------STH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----C--------CcC
Confidence 44566788999999999999999999999999999999765 566644 57899999999642 1 134
Q ss_pred ceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhhH
Q 014323 295 NCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQ 374 (427)
Q Consensus 295 ~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~ 374 (427)
..+++|+++|+++.|++++|.+++..+ |.+..+....+...+....++...+...++++|+.
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla 160 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATD------------------VDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVA 160 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhC------------------hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999999999999999 45555444555555666677888888889999998
Q ss_pred HHhhhc-------CCCCCchhhHHHHhHHH------HHHHHHHHhhCCCC--C-Ccccc
Q 014323 375 DQKAEA-------GGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--G-GRVNI 417 (427)
Q Consensus 375 ~~~~~~-------p~~~~~~~~~~~AS~~~------~~~~~~~~~~~~~~--~-~~~~~ 417 (427)
+++... +.+...+++.+||+.+. ..+++.+++.|--. + ++|.|
T Consensus 161 ~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~I 219 (230)
T PRK09391 161 AFLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGARQIEL 219 (230)
T ss_pred HHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEEE
Confidence 877553 12345678899999884 45566777777432 2 34655
No 11
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-13 Score=126.60 Aligned_cols=167 Identities=16% Similarity=0.197 Sum_probs=124.0
Q ss_pred hcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhh
Q 014323 201 KKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELA 279 (427)
Q Consensus 201 ~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l 279 (427)
...+.|..++++....+......+.+++|+.|+++||+++.+|+|.+|.++++..+ +|++.+ +.+++|||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34566667788888888889999999999999999999999999999999999865 466655 579999999999988
Q ss_pred hccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHH
Q 014323 280 TSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKK 359 (427)
Q Consensus 280 ~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~ 359 (427)
+. ..++..+++|+++|+++.+++++|.+++.+. |.+ .......+....+....
T Consensus 81 ~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--p~l----------------~~~l~~~~~~~l~~~~~ 133 (214)
T COG0664 81 LG---------GDPRSASAVALTDVEVLEIPRKDFLELLAES--PKL----------------ALALLRLLARRLRQALE 133 (214)
T ss_pred hc---------CCCccceEEEcceEEEEEecHHHHHHHHhhC--cHH----------------HHHHHHHHHHHHHHHHH
Confidence 61 1145889999999999999999999988885 332 22223334444444555
Q ss_pred HHhhhhHHHHHhhhHHHhhhcCC-----------CCCchhhHHHHhHH
Q 014323 360 RKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQF 396 (427)
Q Consensus 360 r~~~~~~~~aeery~~~~~~~p~-----------~~~~~~~~~~AS~~ 396 (427)
+......+++++|....+..-.. +...++.+.+|+-+
T Consensus 134 ~~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~ 181 (214)
T COG0664 134 RLSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYL 181 (214)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHh
Confidence 55555667777776655433221 13566777777665
No 12
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.56 E-value=9.9e-14 Score=126.20 Aligned_cols=85 Identities=15% Similarity=0.228 Sum_probs=71.4
Q ss_pred CcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEE
Q 014323 229 ECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 307 (427)
Q Consensus 229 ge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll 307 (427)
|+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.||++||+.+++ ...+ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~-~~~~------~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI-TGHR------SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec-cCCC------CccceEEEEecceEEE
Confidence 7899999999999999999999999765 566654 6899999999998764 1111 1235689999999999
Q ss_pred EecHHHHHHHHHHch
Q 014323 308 AINTDDLRAIVYQYW 322 (427)
Q Consensus 308 ~i~~~df~~ll~~~P 322 (427)
.|++++|.+++.++|
T Consensus 72 ~i~~~~~~~l~~~~p 86 (193)
T TIGR03697 72 AVPIEQVEKAIEEDP 86 (193)
T ss_pred EeeHHHHHHHHHHCh
Confidence 999999999999993
No 13
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.51 E-value=3.4e-13 Score=110.50 Aligned_cols=107 Identities=20% Similarity=0.401 Sum_probs=94.2
Q ss_pred ccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccC
Q 014323 205 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 283 (427)
Q Consensus 205 ~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l 283 (427)
+|..++++.+..++..++.+.+++|++|+.+|++.+.+|||.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4778999999999999999999999999999999999999999999998765 445544 5789999999998865
Q ss_pred CCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 284 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 284 ~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
...++..+++|.++|.++.|+.++|.+++.++|
T Consensus 76 ------~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 76 ------GNGPRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred ------cCCCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 122457899999999999999999999999994
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.49 E-value=2.4e-13 Score=107.44 Aligned_cols=89 Identities=22% Similarity=0.361 Sum_probs=77.5
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcce
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 303 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~ 303 (427)
+.|++|++|+++|++++++|||++|.++++..+.+.+.. .+..+.+|++||+..++.. .++..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~---------~~~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLTG---------KPSPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHHT---------SBBSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecCC---------CccEEEEEEccC
Confidence 689999999999999999999999999999877544332 2579999999999988621 245889999999
Q ss_pred EEEEEecHHHHHHHHHHch
Q 014323 304 VEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 304 ~~ll~i~~~df~~ll~~~P 322 (427)
|+++.|++++|.++++++|
T Consensus 72 ~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSH
T ss_pred EEEEEEeHHHHHHHHHhCc
Confidence 9999999999999999996
No 15
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.49 E-value=8.2e-13 Score=121.16 Aligned_cols=173 Identities=16% Similarity=0.186 Sum_probs=107.3
Q ss_pred hccceeecCCcEEEecCC--CCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcce
Q 014323 220 CLKPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNC 296 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd--~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~ 296 (427)
.++.+.|++|++|+++|| +++.+|+|++|.|+++..+ +|++.+ +..+.|||+||+..++ .. +++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~--~~--------~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA--GA--------ERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc--CC--------CCCc
Confidence 467889999999999999 7799999999999999865 677765 6799999999997542 12 3467
Q ss_pred eEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHH
Q 014323 297 ALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQ 376 (427)
Q Consensus 297 tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~ 376 (427)
+++|+++|+++.|++++| .| .+....+.... ..+....+.+........++|+...+..-++ ++...
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~--~~~~~l~~~l~----~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~-~~~~~ 139 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SA--EDNLVLTQHLV----RTLARAYESIYRLVGQRLKNRIAAALLELSD-TPLAT 139 (202)
T ss_pred eEEEcCceEEEEEEHHHc------Ch--hhHHHHHHHHH----HHHHHHHHHHHHHHhCchHHHHHHHHHHHHH-HhCCC
Confidence 899999999999999987 22 22211111111 1111111222222233333344433333222 11111
Q ss_pred hhhcCCCCCchhhHHHHhHHH------HHHHHHHHhhCCCC--CCcccc
Q 014323 377 KAEAGGKPSKFGTAIYATQFF------TYVRRSVKRNGGLP--GGRVNI 417 (427)
Q Consensus 377 ~~~~p~~~~~~~~~~~AS~~~------~~~~~~~~~~~~~~--~~~~~~ 417 (427)
....|.+...+++.+||+.+. ..+|+-+++.|--. +++|.|
T Consensus 140 ~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I 188 (202)
T PRK13918 140 QEDSGETMIYATHDELAAAVGSVRETVTKVIGELSREGYIRSGYGKIQL 188 (202)
T ss_pred CCCCCeEEecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCCCEEEE
Confidence 223445567888999998874 44555566666333 334554
No 16
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.41 E-value=4.7e-12 Score=104.19 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=94.0
Q ss_pred ccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccC
Q 014323 205 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 283 (427)
Q Consensus 205 ~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l 283 (427)
+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.++++..+ +|++.. +..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~-~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL-TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc-cC
Confidence 4778999999999999999999999999999999999999999999999765 444433 5799999999999864 11
Q ss_pred CCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 284 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 284 ~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
...++..+++|.++|+++.++.+++...+..+|
T Consensus 78 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 78 ------SRRAASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred ------CCcccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 112457899999999999999999999999994
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.38 E-value=8e-13 Score=131.27 Aligned_cols=130 Identities=19% Similarity=0.349 Sum_probs=111.3
Q ss_pred HHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 195 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 195 l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
-+.++|+.+|+|.+++++.+..|++.++...|..|++|+++|+.++.+|+|.+|.|.+...+++.+.-..+..+..||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 46789999999999999999999999999999999999999999999999999999999877654433447899999999
Q ss_pred chhhhhccCCCCCCCCCCCcceeEEEcce-EEEEEecHHHHHHHHHHchhhhhhhhchhhHh
Q 014323 275 GEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQYWQHRNHNMQPLDIF 335 (427)
Q Consensus 275 Ge~~l~~~l~p~~~~~~~~s~~tv~Al~~-~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~ 335 (427)
||-+++ +...+++++.|..+ ++++.|+++.|.+++... ..+..+......
T Consensus 349 GE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l--~~l~ek~~~D~~ 399 (732)
T KOG0614|consen 349 GERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDL--EELKEKDYGDEE 399 (732)
T ss_pred hHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccH--HHhhhhhccchh
Confidence 999986 33356889999987 999999999999999998 555554444433
No 18
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.34 E-value=1e-11 Score=126.59 Aligned_cols=113 Identities=18% Similarity=0.316 Sum_probs=98.5
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
.++++++++|+.++++.++.++..++.+.|++|++|+++||.++.+|||++|.|+++..+++.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 467889999999999999999999999999999999999999999999999999999876443433 678999999997
Q ss_pred hhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 277 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 277 ~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
. + ...++..+++|.++|+++.|++++|..+...++
T Consensus 85 ~-l----------~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----------SGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----------CCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 3 122458899999999999999999998887773
No 19
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.28 E-value=4.5e-11 Score=120.41 Aligned_cols=112 Identities=15% Similarity=0.271 Sum_probs=99.0
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
.+++.+.|.|..++++++++|...+....|.|||+|+..|.+.+++|+|.+|.|+++..++. .+..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 56899999999999999999999999999999999999999999999999999998875433 2589999999999
Q ss_pred hhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 277 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 277 ~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
.+++..+. ....+.|.+|+.+|.|+++.|.++++++|
T Consensus 81 ~~l~~~~~---------~~~~~~aeedsl~y~lp~s~F~ql~~~n~ 117 (610)
T COG2905 81 SSLFTELN---------KQRYMAAEEDSLCYLLPKSVFMQLMEENP 117 (610)
T ss_pred hhhcccCC---------CcceeEeeccceEEecCHHHHHHHHHhCc
Confidence 98862222 14478888899999999999999999994
No 20
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-11 Score=118.30 Aligned_cols=110 Identities=17% Similarity=0.279 Sum_probs=99.0
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
.+.+++.-+|..++++.+..+.+.+..+.+++|+.|+++|+.++.+|+|.+|.+.++.. |. .+..+.||..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce----EEeeeCCCCchhh
Confidence 56788888999999999999999999999999999999999999999999999999985 22 2679999999999
Q ss_pred hhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc
Q 014323 277 ELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 277 ~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~ 321 (427)
.+++ ..+|+.+|+.|.+++.+|.|++..|..++-..
T Consensus 195 lALm---------yn~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 195 LALM---------YNPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred hHhh---------hCCCcccceeeccccceEEEeeceeEEEeecc
Confidence 9987 34567999999999999999999998866655
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.21 E-value=2e-11 Score=121.40 Aligned_cols=117 Identities=21% Similarity=0.407 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcC
Q 014323 190 EMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLS 269 (427)
Q Consensus 190 ~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~ 269 (427)
.-...+..+.+.+-.++++++..++..+...|-++.|.+|+.|+++||+++++|.+.+|.+.+.. +|+ .+..++
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~----ll~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK----LLGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe----eeeccC
Confidence 34456677888888999999999999999999999999999999999999999999999999987 443 268999
Q ss_pred CCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc
Q 014323 270 TGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 270 ~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~ 321 (427)
+|..|||.++++.. +++++|+|+++|.+|.|+++.|+.++...
T Consensus 220 ~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 220 AGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred CchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999987433 46899999999999999999999999887
No 22
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.05 E-value=5.1e-10 Score=86.90 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 127 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~ 127 (427)
...|..++||++.|+||+||||+.|.++..++++++.+++|+.++++.++.+.+.+.
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 557899999999999999999999999999999999999999999999999998875
No 23
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=8.9e-10 Score=105.32 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCC
Q 014323 191 MKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLST 270 (427)
Q Consensus 191 i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~ 270 (427)
-++-++.++|+.+|++..++..+...+++.+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+| +.+ .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~----v~v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG----VEV-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC----eEE-Eech
Confidence 45668899999999999999999999999999999999999999999999999999999998876555 224 8999
Q ss_pred CCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc
Q 014323 271 GDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 271 Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~ 321 (427)
||+|||.+++ ...++.++|.|.+...+..++++.|+.|+.-.
T Consensus 308 ~dyfge~al~---------~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 308 GDYFGELALL---------KNLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hhhcchHHHH---------hhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999999986 23356899999999999999999999999876
No 24
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.50 E-value=9.8e-08 Score=95.49 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 132 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~ 132 (427)
+.--=.++||++.|||||||||++|.|..-++++...+++|+++.|+=|..|.+=+......
T Consensus 375 FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 375 FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 44455699999999999999999999999999999999999999999777666655444443
No 25
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1e-06 Score=88.80 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=75.7
Q ss_pred CcchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHH
Q 014323 67 EKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQW 146 (427)
Q Consensus 67 ~~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~ 146 (427)
..+-+.-|-.|+||++.|+||+||||.+|.|..-++.+.++.++|+.+||.--|.+++-+.-+-. ++ +.=++|
T Consensus 263 ~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq-----~RQKHf 335 (654)
T KOG1419|consen 263 TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQ-----HRQKHF 335 (654)
T ss_pred ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HH-----HHHHHH
Confidence 35678899999999999999999999999999999999999999999999988887776543211 12 222478
Q ss_pred HhhhcCCHHHHHHHHHHHH
Q 014323 147 RTFEMLSQSLQQRVRNHQQ 165 (427)
Q Consensus 147 m~~~~lp~~L~~rv~~y~~ 165 (427)
-|+++.--.|.+-.-+||-
T Consensus 336 ~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 336 NRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 8899988889888877764
No 26
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.29 E-value=1.8e-06 Score=86.97 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 126 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l 126 (427)
...+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 166 ~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 166 IESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999887644
No 27
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.03 E-value=4.3e-06 Score=88.55 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=92.8
Q ss_pred HHHHHHHHhhcCcccc-cCC-------HHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeee
Q 014323 192 KSELCLEVLKKVPMFQ-MMG-------KSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTS 262 (427)
Q Consensus 192 ~~~l~~~~L~~v~~F~-~l~-------~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~ 262 (427)
.+..+..++..-|... .+. +.++..+-..+....+.+|+.++++||..+.+|+|+.|.++..... +|+..+
T Consensus 471 srs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i 550 (1158)
T KOG2968|consen 471 SRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI 550 (1158)
T ss_pred eHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh
Confidence 3444455666655322 122 2345566667788999999999999999999999999999988654 444434
Q ss_pred EEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 263 VFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 263 ~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+..++.||.+|+...+ ...++..|+.|+.++++..||..-|..+..+||
T Consensus 551 --~~EygrGd~iG~~E~l---------t~~~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 551 --VGEYGRGDLIGEVEML---------TKQPRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred --hhhccCcceeehhHHh---------hcCCccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 5799999999999876 223457799999999999999999999999995
No 28
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.80 E-value=4.4e-05 Score=77.55 Aligned_cols=60 Identities=15% Similarity=0.335 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 132 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~ 132 (427)
-+..|+||+++++||+|||++.|.|...++|+|+..++|+=++..+++++..++...-.+
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999998765433
No 29
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.73 E-value=0.003 Score=54.26 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=84.8
Q ss_pred cCCHHHHHHHHhh-ccceeecCCcEEEecC-CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCC
Q 014323 208 MMGKSILSEMCKC-LKPVLYVQECCIVKEG-DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDP 285 (427)
Q Consensus 208 ~l~~~~l~~l~~~-l~~~~~~kge~I~~eG-d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p 285 (427)
+++....+.|+.. .+...+.+|+.-.-|| .+.+.+-++++|.+++... |+- +..+.|.+|...-.+. +..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhh-cccc
Confidence 4788888888877 6778899999998888 5678999999999999873 432 6788898888887754 3323
Q ss_pred CCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc
Q 014323 286 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 286 ~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~ 321 (427)
+ .......|+.|.++|..+..+++.+..++.+.
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~ 119 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKD 119 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence 2 33455789999999999999999999999999
No 30
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.68 E-value=0.0025 Score=58.21 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=80.8
Q ss_pred HHHHHHhhccceeecCCcEE-EecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCC
Q 014323 213 ILSEMCKCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 291 (427)
Q Consensus 213 ~l~~l~~~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~ 291 (427)
..+.+....++..+++|..+ .......+.+++|.+|.+.+.. .|+ ..+....+..+||-...+ .+.
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~----ll~~t~~aP~IlGl~~~~---~~~----- 80 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN----VLIGITQAPYIMGLADGL---MKN----- 80 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC----eEEEeccCCeEeeccccc---CCC-----
Confidence 34566677788999999997 4444444679999999999953 343 225688889999976532 111
Q ss_pred CCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHH
Q 014323 292 PHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQA 352 (427)
Q Consensus 292 ~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~ 352 (427)
...+.++|.++|+++.++.++|.++++++ +=|+.+++.++..
T Consensus 81 -~~~~~l~ae~~c~~~~i~~~~~~~iie~~------------------~LW~~~~~~l~~~ 122 (207)
T PRK11832 81 -DIPYKLISEGNCTGYHLPAKQTITLIEQN------------------QLWRDAFYWLAWQ 122 (207)
T ss_pred -CceEEEEEcCccEEEEeeHHHHHHHHHHh------------------chHHHHHHHHHHH
Confidence 22468999999999999999999999999 7777777766553
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00023 Score=70.88 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 014323 70 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTF 149 (427)
Q Consensus 70 ~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~ 149 (427)
....|+.++|....|.-++||||+.|.|..-+..+++.-++|.++-|.++..|+.=+ +...--+.+.+||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 667799999999999999999999999999999999999999999999998876533 333334567788888
Q ss_pred hcCCHHHHHHHHHHHHHHHH
Q 014323 150 EMLSQSLQQRVRNHQQYVWQ 169 (427)
Q Consensus 150 ~~lp~~L~~rv~~y~~~~w~ 169 (427)
.++.++++.-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777766665665554
No 32
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.64 E-value=1.6e-06 Score=83.12 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 014323 69 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTI 124 (427)
Q Consensus 69 ~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~ 124 (427)
+-+...=.+|||++.|||||||||..|.|.+-+++..++.+.|++-.|+-+..|.+
T Consensus 389 S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 389 SHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred cCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 34445556999999999999999999999999999999999999988875544443
No 33
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.62 E-value=3e-05 Score=78.59 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Q 014323 72 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEM 151 (427)
Q Consensus 72 ~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~ 151 (427)
.-|..|.||.+.||+||||||+...|...++|.+++++.|+.+||..+..|..++-+..+---++...- ==+|--
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHIV 361 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeEE
Confidence 369999999999999999999999999999999999999999999999999999876554333332110 001111
Q ss_pred CCHHH-HHHHHHHHHHHHHHh-hccch-hhhhcCCChhhHHHHHHHHHHHHhhcCccccc--CCHHHHHH
Q 014323 152 LSQSL-QQRVRNHQQYVWQEM-RGIDV-ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQM--MGKSILSE 216 (427)
Q Consensus 152 lp~~L-~~rv~~y~~~~w~~~-~~~~e-~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~--l~~~~l~~ 216 (427)
+=.++ -+.|..|++-.-.++ ..+|- --.|...|++|.-+ -++...+.++.+|++ |++..+..
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 11111 122333333222222 23453 34577888877543 234445677888876 66655443
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.47 E-value=0.00079 Score=71.94 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=79.9
Q ss_pred HhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcce
Q 014323 218 CKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNC 296 (427)
Q Consensus 218 ~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~ 296 (427)
+.+.+...+..|++|++.|++.+.+|.+.+|.+.++..+ +|++.. +....+|+.|.....+.+.-|. ......+.
T Consensus 112 ~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiLd~l~~--~ps~~~~i 187 (1158)
T KOG2968|consen 112 DRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSILDSLPG--FPSLSRTI 187 (1158)
T ss_pred chhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHHHhccC--CCccccee
Confidence 367788889999999999999999999999999988766 566654 6799999877765433222221 11123467
Q ss_pred eEEEcceEEEEEecHHHHHHHHHHch
Q 014323 297 ALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 297 tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
.++|.++|.+..++...|..+...||
T Consensus 188 ~akA~t~~tv~~~p~~sF~~~~~k~P 213 (1158)
T KOG2968|consen 188 AAKAATDCTVARIPYTSFRESFHKNP 213 (1158)
T ss_pred eeeeecCceEEEeccchhhhhhccCh
Confidence 88999999999999999999999997
No 35
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.21 E-value=6.1e-05 Score=73.14 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=52.4
Q ss_pred CcchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHH----HHHhHHHHHHh
Q 014323 67 EKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLL----VLGNLTIYLQS 128 (427)
Q Consensus 67 ~~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~----lig~i~~~l~~ 128 (427)
+.+-+...-.+||+.+.||||+||||.+|.|...++|..+..+.|+++.|+ +++|++.|.++
T Consensus 350 ~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 350 SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 444555666799999999999999999999999999999999999998887 56677766643
No 36
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.97 E-value=0.00085 Score=60.17 Aligned_cols=56 Identities=27% Similarity=0.275 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHHHhhhcccccCCCcccC-----ChhhHHHH-HHHHHHHHHHHHHHHHhH
Q 014323 67 EKAFKKKFIYCFRWGLQTVSCAGQNLQTST-----HEGENLLA-SFIIIASLLLLLLVLGNL 122 (427)
Q Consensus 67 ~~~~~~~Y~~slyw~~~tlttvGygdi~~~-----~~~E~~f~-i~~~i~G~~~fa~lig~i 122 (427)
..+.++.|..|+||.+.++|+.|+|++.+. +..+.++. +++.+.+.++++.++|+|
T Consensus 139 ~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 139 GYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp THHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 456678899999999999999999999886 88999999 666777779999999986
No 37
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.69 E-value=0.0052 Score=63.86 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=89.1
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHhhcccee-ecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCC
Q 014323 194 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGD 272 (427)
Q Consensus 194 ~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd 272 (427)
+...++..+.|.|.+|+-...+++|..+.... =..|.+|+..|+.-+..+.|+.|+|++...+|.. ..+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccc
Confidence 34578899999999999999999998887654 4579999999999999999999999999987764 4677899
Q ss_pred eechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 273 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 273 ~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
.||...-. +.. +.. -.--.-+.||+..+|...|+-.++.+.-
T Consensus 351 SFG~~PT~---dkq-ym~----G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEPTP---DKQ-YMI----GEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCCCc---chh-hhh----hhhheecccceEEEeehhhHHHHHHHHH
Confidence 99976421 100 000 0111346899999999999999887753
No 38
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.63 E-value=0.0031 Score=62.27 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhcccccCCC--cccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 130 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygd--i~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~ 130 (427)
...+..+|+|++.|+||+|||. ++|....-.+..++=+++|+++.|+++|.+..=+..-.
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4579999999999999999998 56777777788888899999999999999887665543
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0033 Score=60.18 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhcccccCCCcccCCh-------hh-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHE-------GE-NLLASFIIIASLLLLLLVLGNLTIYLQSGT 130 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~-------~E-~~f~i~~~i~G~~~fa~lig~i~~~l~~~~ 130 (427)
-|+.|+||.+.|+||+|+||-++.-. .+ +.|+.+.+++|+.+++-.++-+.-.+..++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999877543 22 467778888898888877777666555443
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.00089 Score=63.99 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHH
Q 014323 68 KAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVL 119 (427)
Q Consensus 68 ~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~li 119 (427)
....=++.-||||+.+.+||+|||-.+|.|+.-++|+|+..++|+-+--..+
T Consensus 75 ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 75 AGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred cccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 3344478889999999999999999999999999999999999976544443
No 41
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.004 Score=63.13 Aligned_cols=48 Identities=29% Similarity=0.299 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcccccCCCcccCChhhH--------HHHHHHHHHHHHHHHHHH
Q 014323 72 KKFIYCFRWGLQTVSCAGQNLQTSTHEGEN--------LLASFIIIASLLLLLLVL 119 (427)
Q Consensus 72 ~~Y~~slyw~~~tlttvGygdi~~~~~~E~--------~f~i~~~i~G~~~fa~li 119 (427)
--|+.|+||++.++||+|+||+.|.+.... .+..+..++|...++.++
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 368889999999999999999999998755 678888888888888877
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.18 E-value=0.084 Score=55.23 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeE
Q 014323 184 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSV 263 (427)
Q Consensus 184 p~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~ 263 (427)
|+.|+....+.--...|.....|.++-...++++|...+...++...++|+.|+++...|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 33444333333334467778889999999999999999999999999999999999999999999986542
Q ss_pred EEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEec
Q 014323 264 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 310 (427)
Q Consensus 264 ~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~ 310 (427)
..+-|-.+||-.. +..++.++-.+++++.++++
T Consensus 94 --qi~mp~~~fgkr~------------g~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------------GQNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --ceecCcccccccc------------ccccccceeeecccceeeee
Confidence 1334444566542 12356777788888888874
No 43
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=90.14 E-value=0.068 Score=54.62 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHH
Q 014323 74 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLL 113 (427)
Q Consensus 74 Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~ 113 (427)
-+.|+||++.|++||||||..|......++.++++.++++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 3468999999999999999999766666655554444443
No 44
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=81.68 E-value=2.9 Score=30.54 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=32.8
Q ss_pred eeecCCcEEEecCCCCc-eEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 224 VLYVQECCIVKEGDPIC-EMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~-~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..++||+..-..-.+.. ++++|++|.+.+. .+ |+ ...+.+||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 46778887665555566 8999999999988 33 33 25788998664
No 45
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=79.02 E-value=3.4 Score=35.05 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014323 69 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 129 (427)
Q Consensus 69 ~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~ 129 (427)
........++++++.+++. +.++..|.+...+++.+++.++++++.++.-+++.+++...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456778899999988877 44578899999999999999999999999999999998755
No 46
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=77.85 E-value=11 Score=31.59 Aligned_cols=68 Identities=7% Similarity=0.016 Sum_probs=42.2
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 302 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~ 302 (427)
...++||..+-..-....++++|++|.+.+...++|+ ...+.+||.+---+- ....+.+.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~--------------~~H~~~N~e 99 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKH--------------DRHYLRAGE 99 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCC--------------CcEEEEcCC
Confidence 3467788654322112247999999999987333344 358999998754321 134555558
Q ss_pred eEEEEEe
Q 014323 303 NVEAFAI 309 (427)
Q Consensus 303 ~~~ll~i 309 (427)
+++++.+
T Consensus 100 ~~~~l~v 106 (125)
T PRK13290 100 DMRLVCV 106 (125)
T ss_pred CEEEEEE
Confidence 8887765
No 47
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=76.32 E-value=3.3 Score=41.12 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhcccccCCCccc--CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTS--THEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 129 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~--~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~ 129 (427)
..-...||-|++-|=||+|||--.+ --..-++..++=+|+|+++-|+++|.|..=+..-
T Consensus 110 V~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 110 VHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred ccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4567789999999999999997543 2344455555667899999999999887655443
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=72.01 E-value=17 Score=32.59 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHH--HhhccchhhhhcCC--ChhhHHHHHHHHHHHHhhcCcccccCCH
Q 014323 140 AREIEQWRTFEMLSQSLQQRVRNHQQYVWQ--EMRGIDVENLLNNL--PVNLNWEMKSELCLEVLKKVPMFQMMGK 211 (427)
Q Consensus 140 ~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~--~~~~~~e~~ll~~L--p~~Lr~~i~~~l~~~~L~~v~~F~~l~~ 211 (427)
++++++|++ .+|++.++.+..+|+-++. ...|.+|+++.++| |+++-+|+..+.-.+-.+.-|-+.+...
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 456667764 7999999999888875554 45678899999998 6777777777664444444444444433
No 49
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=68.15 E-value=13 Score=32.70 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=42.1
Q ss_pred EecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHH
Q 014323 233 VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTD 312 (427)
Q Consensus 233 ~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~ 312 (427)
++.. ..++++++++|.+.+...++|+.. ...+++||+|=-- + +. ..+-++.++|.++.|.+.
T Consensus 43 ~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP--------~---gv---pHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLP--------P---HV---PHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeC--------C---CC---CcccccCCCcEEEEEEeC
Confidence 4443 378999999999999877766421 3589999987432 2 11 234455678888888765
Q ss_pred H
Q 014323 313 D 313 (427)
Q Consensus 313 d 313 (427)
.
T Consensus 105 r 105 (159)
T TIGR03037 105 R 105 (159)
T ss_pred C
Confidence 4
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=67.97 E-value=26 Score=31.25 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH--hhccchhhhhcCC--ChhhHHHHHHHH
Q 014323 139 KAREIEQWRTFEMLSQSLQQRVRNHQQYVWQE--MRGIDVENLLNNL--PVNLNWEMKSEL 195 (427)
Q Consensus 139 ~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l 195 (427)
=+++++.+++ ++|++-++.+.+||+-..+. ..|.+|+++.++| |+.+-+++..+.
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3566778886 59999999999999877653 4577899999998 666666666543
No 51
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=67.48 E-value=11 Score=28.43 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=28.8
Q ss_pred ecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 226 YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 226 ~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..+|..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555444432 28899999999998865 444 25788999774
No 52
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.29 E-value=33 Score=37.49 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=54.2
Q ss_pred ccccCCCcccCCh------hhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhh-HHHHHHHHHHHHHHhhhcCCHHHHH
Q 014323 86 SCAGQNLQTSTHE------GENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL-EEIKSKAREIEQWRTFEMLSQSLQQ 158 (427)
Q Consensus 86 ttvGygdi~~~~~------~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~-~~~~~~~~~l~~~m~~~~lp~~L~~ 158 (427)
.|+|+||.....+ .-.+|.+++++..++++-.+|+-|++-........ .+++.+.. ..--|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 5789999755433 35677778888888888888888888887776655 55555443 3446678899999988
Q ss_pred HHH
Q 014323 159 RVR 161 (427)
Q Consensus 159 rv~ 161 (427)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 844
No 53
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=61.57 E-value=41 Score=33.86 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 014323 69 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 130 (427)
Q Consensus 69 ~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~ 130 (427)
-..--|+-+|-|++..+.+++-++....-..-..+++++.++++++|-+.|..+...++-.+
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34567888999999999888877653222333888888888889999999998888776544
No 54
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=59.88 E-value=52 Score=23.53 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=23.0
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHhHHHHHHhhhhhh---HHHHHHHHHHHHHHh
Q 014323 100 ENLLASF---IIIASLLLLLLVLGNLTIYLQSGTIKL---EEIKSKAREIEQWRT 148 (427)
Q Consensus 100 E~~f~i~---~~i~G~~~fa~lig~i~~~l~~~~~~~---~~~~~~~~~l~~~m~ 148 (427)
..++.+. +.+++.+.|+. -|-.++++.+.+. ..+++|.+++-+.+.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3445553 33333334443 3444444433332 357888887776543
No 55
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=59.74 E-value=22 Score=31.81 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=42.0
Q ss_pred CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHH
Q 014323 237 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLR 315 (427)
Q Consensus 237 d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~ 315 (427)
++.++++++++|.+.+...++|+.. ...+.+||+|=- |+ +. ..+-++-++|..+.|.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~---gv---pHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PP---HV---PHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CC---CC---CcCCccCCCeEEEEEEeCCCC
Confidence 4578999999999998887766422 357999998732 22 11 223355678888888765443
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=55.42 E-value=16 Score=29.82 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHHHHHH----------hhccchhhhhcCCChhhHHHHHHH
Q 014323 151 MLSQSLQQRVRNHQQYVWQE----------MRGIDVENLLNNLPVNLNWEMKSE 194 (427)
Q Consensus 151 ~lp~~L~~rv~~y~~~~w~~----------~~~~~e~~ll~~Lp~~Lr~~i~~~ 194 (427)
-||.++|..|..++.-.-.. ....|...++..||+.||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 58999999999887654221 223556789999999999998754
No 57
>PHA03029 hypothetical protein; Provisional
Probab=55.30 E-value=69 Score=24.10 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhH----HHHHHHHHHHHHHh
Q 014323 97 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLE----EIKSKAREIEQWRT 148 (427)
Q Consensus 97 ~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~----~~~~~~~~l~~~m~ 148 (427)
++.|.+|-++..++=+++.--+||.+-.++.+.++-.. .++.++..+-.||.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raai~qnirsrrkg~ywfln 57 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAIDQNIRSRRKGLYWFLN 57 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 56788998888888888888888888888877765433 33333344444443
No 58
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=53.58 E-value=38 Score=28.30 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=34.1
Q ss_pred hccceeecCCcEE-EecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 220 CLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 220 ~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
......+++|+-+ .+--...+++|+|++|...+... ++ ...+++||.+=
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~~ 86 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSVY 86 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEEE
Confidence 3455667777764 44444478999999999998874 33 24788888653
No 59
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=51.01 E-value=87 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCHHHHHHHHhhcccee--ecCCcEEEecCCCCc
Q 014323 209 MGKSILSEMCKCLKPVL--YVQECCIVKEGDPIC 240 (427)
Q Consensus 209 l~~~~l~~l~~~l~~~~--~~kge~I~~eGd~~~ 240 (427)
.++.......+...+.. +.+|+.|+++|++++
T Consensus 174 ~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 174 ATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 56667788888888888 999999999999875
No 60
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=50.47 E-value=32 Score=21.79 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhcCC-----HHHHHHHHHHH
Q 014323 139 KAREIEQWRTFEMLS-----QSLQQRVRNHQ 164 (427)
Q Consensus 139 ~~~~l~~~m~~~~lp-----~~L~~rv~~y~ 164 (427)
++.++.++++.+++| .+|..|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 467888999999998 67888888874
No 61
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=46.86 E-value=39 Score=28.14 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=38.8
Q ss_pred ccceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhh
Q 014323 221 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 278 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~ 278 (427)
.....+.||..+-.---+ .+...+|++|.+++... |. ...+.+||++-...
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEECC
Confidence 345678888888776666 77899999999998875 33 25799999887543
No 62
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=46.13 E-value=52 Score=28.05 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=35.6
Q ss_pred ccceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeech
Q 014323 221 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fGe 276 (427)
+....+.+|...-..-.+ ..++++|++|...+...+. +.+.. ...+.+||.+-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 344567777765444322 5689999999999886543 33322 367999997754
No 63
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=39.69 E-value=80 Score=27.25 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh-------------hhhHHHHHHHHHHHHHHhh
Q 014323 104 ASFIIIASLLLLLLVLGNLTIYLQSGT-------------IKLEEIKSKAREIEQWRTF 149 (427)
Q Consensus 104 ~i~~~i~G~~~fa~lig~i~~~l~~~~-------------~~~~~~~~~~~~l~~~m~~ 149 (427)
.+++.++|+.+||++++-+.+.-...+ ....+|+.+++...+.++.
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 367899999999999987644322111 1257788888888766654
No 64
>PRK09108 type III secretion system protein HrcU; Validated
Probab=39.22 E-value=91 Score=31.19 Aligned_cols=69 Identities=4% Similarity=0.021 Sum_probs=53.1
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 94 TSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 94 ~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
++......++.++..++..++.++++-.+..+.-+...-.++++...+++++-+|+..-+++++.|+|+
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344456667777777777777777777777777666666677777788999999999999999998885
No 65
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=37.50 E-value=1.1e+02 Score=23.75 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=42.6
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEE
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 299 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~ 299 (427)
......+.||..+=.-.-.+.+..||++|.+.. +++ .+.+|+++=.-. .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 345667888988877667778888999999762 222 347777654322 2366788
Q ss_pred EcceEEEEE
Q 014323 300 SVTNVEAFA 308 (427)
Q Consensus 300 Al~~~~ll~ 308 (427)
+-++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888988875
No 66
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=34.55 E-value=93 Score=31.30 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=33.5
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fG 275 (427)
....+.+|...-.---...++.+|++|.+++...+. |+. . ...+.+||++-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~-~--~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN-Y--IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE-E--EeEECCCCEEE
Confidence 344566776543222235689999999999988654 442 2 24699999874
No 67
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=34.53 E-value=1.6e+02 Score=26.69 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=26.1
Q ss_pred ecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 234 KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 234 ~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
++.....++|+|++|...+...+...+. ....+.+||.+=
T Consensus 92 H~~~~~~EiyyvlsG~g~~~l~~~~G~~--~~~~v~pGd~v~ 131 (191)
T PRK04190 92 HAKADRAEIYYGLKGKGLMLLQDPEGEA--RWIEMEPGTVVY 131 (191)
T ss_pred cCCCCCCEEEEEEeCEEEEEEecCCCcE--EEEEECCCCEEE
Confidence 3333345999999999998765432111 135789999764
No 68
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=33.64 E-value=99 Score=18.05 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=16.0
Q ss_pred hhHHHHHhhhHHHhhhcCC
Q 014323 364 GSLYAKENILQDQKAEAGG 382 (427)
Q Consensus 364 ~~~~~aeery~~~~~~~p~ 382 (427)
.....|.+-|+.+++++|+
T Consensus 14 g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHCcC
Confidence 4567888899999999997
No 69
>PHA02909 hypothetical protein; Provisional
Probab=33.26 E-value=47 Score=23.51 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=26.2
Q ss_pred hcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014323 84 TVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQ 127 (427)
Q Consensus 84 tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~ 127 (427)
.|.+|.||+-..+...|..|+|.+. .++|..++-.|..++.
T Consensus 13 lmlsvdygngkkvyytentfcimvs---filfviiflsmftila 53 (72)
T PHA02909 13 LMLSVDYGNGKKVYYTENTFCIMVS---FILFVIIFLSMFTILA 53 (72)
T ss_pred EEEEEecCCCeEEEEeccchhHHHH---HHHHHHHHHHHHHHHH
Confidence 3667888888777778888876553 3445455555555443
No 70
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=32.59 E-value=1.2e+02 Score=30.37 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 014323 96 THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNH 163 (427)
Q Consensus 96 ~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y 163 (427)
......++..++.+++.++.++++-.+..++-+...-..+++...+++++-+|+..-+++++.|+|+-
T Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 173 ACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34555566677777777666666666666665555555667777788999999999999999988853
No 71
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=32.38 E-value=1.2e+02 Score=25.86 Aligned_cols=25 Identities=4% Similarity=-0.097 Sum_probs=17.1
Q ss_pred HhhhhHHHHHhhhHHHhhhcCCCCC
Q 014323 361 KLEGSLYAKENILQDQKAEAGGKPS 385 (427)
Q Consensus 361 ~~~~~~~~aeery~~~~~~~p~~~~ 385 (427)
+..+....||.-|..+++.+|+-++
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLp 111 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLP 111 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-TH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHH
Confidence 4444557889999999999997553
No 72
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.97 E-value=1.6e+02 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=31.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 014323 129 GTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQY 166 (427)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~ 166 (427)
..+.......++++++.+++...||++++....+-++-
T Consensus 22 k~pgts~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~ 59 (199)
T KOG4484|consen 22 KKPGTSSIKNQIRDLERLLKKKDLPPEVREELERKLQD 59 (199)
T ss_pred cCCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 45567788889999999999999999998877665553
No 73
>PRK08156 type III secretion system protein SpaS; Validated
Probab=31.83 E-value=1e+02 Score=30.94 Aligned_cols=68 Identities=6% Similarity=0.030 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 014323 96 THEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNH 163 (427)
Q Consensus 96 ~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y 163 (427)
......+..++..++..++.++++-.+..+.-+...-.++++...+++++-.|+..-+++++.|+|+-
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 168 VGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34445555666666666666666666666665555555677777788999999999999999998853
No 74
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=31.77 E-value=1.5e+02 Score=29.41 Aligned_cols=77 Identities=9% Similarity=0.051 Sum_probs=53.9
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcce
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN 303 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~ 303 (427)
+.+++|..--..-..+..+|+|++|.-.+.. +++ ....++||+|-.-++- ..+..+.++
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~-----~~~W~~gD~f~vPsW~--------------~~~h~a~~d 313 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDA-----VFRFSPKDVFVVPSWH--------------PVRFEASDD 313 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE--CCE-----EEEecCCCEEEECCCC--------------cEecccCCC
Confidence 5566777666666778899999999988776 333 2478999998765531 223445578
Q ss_pred EEEEEecHHHHHHHHHHc
Q 014323 304 VEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 304 ~~ll~i~~~df~~ll~~~ 321 (427)
+.++.++-.-+++-+.-+
T Consensus 314 a~Lf~~~D~Pll~~LGl~ 331 (335)
T TIGR02272 314 AVLFSFSDRPVQQKLGLF 331 (335)
T ss_pred eEEEEecCHHHHHHhccc
Confidence 889998887777655443
No 75
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=31.31 E-value=2.6e+02 Score=23.54 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=34.9
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CC-----eeeeEEEEEcCCCCeechh
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GG-----RNTSVFKKYLSTGDFWGEE 277 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g-----~e~~~~~~~l~~Gd~fGe~ 277 (427)
....+.||....---..+.++.+|.+|..++.... ++ +.....+ .+++||+|-.-
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~vP 97 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFVVP 97 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEEE-
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeecee-eeecccceeec
Confidence 34455777776544447889999999999965433 32 1111112 49999998643
No 76
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=31.20 E-value=2.9e+02 Score=26.99 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=46.3
Q ss_pred hhcccccCCCcccCChhhHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Q 014323 83 QTVSCAGQNLQTSTHEGENLLASFII-IASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVR 161 (427)
Q Consensus 83 ~tlttvGygdi~~~~~~E~~f~i~~~-i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~ 161 (427)
..+++.|-+...| +++.++- +.+.++++|+.-.+..+.-+...-..+++...+++++-.|+.+=+++++.+=|
T Consensus 166 ~~lp~CG~~C~~~------Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRR 239 (349)
T COG4792 166 LYLPGCGLYCALP------VVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRR 239 (349)
T ss_pred hhccccccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHH
Confidence 3455566555544 2222222 33334677776666666665566666777777888888888888888877655
Q ss_pred HH
Q 014323 162 NH 163 (427)
Q Consensus 162 ~y 163 (427)
+.
T Consensus 240 q~ 241 (349)
T COG4792 240 QL 241 (349)
T ss_pred HH
Confidence 43
No 77
>PRK11171 hypothetical protein; Provisional
Probab=30.97 E-value=1.3e+02 Score=28.71 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.1
Q ss_pred hccceeecCCcEEEe-cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 220 CLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 220 ~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.+....++||..+-. ......+.++|++|++.+.. +++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 455677899988866 36677799999999999864 344 25789999764
No 78
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=30.49 E-value=1.3e+02 Score=30.08 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=45.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 97 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 97 ~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
.....+...+..+++.++.++++-.+..+.-+...-.++++...+++++-+|+..-+++++.|+|+
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 183 QLPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344445556666666666666665566665555555566677778888888999999999888875
No 79
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.87 E-value=1.2e+02 Score=30.56 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=47.0
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 95 STHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 95 ~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
+......++.++..++..++.++++-.+..++-+...-..+++...+++++-.|+..=+++++.|+|+
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~ 246 (359)
T PRK05702 179 LEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQ 246 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33445556666666666666666665666666555555566666778888888998999999888875
No 80
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=29.59 E-value=1.5e+02 Score=20.13 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.6
Q ss_pred ccCChhhHHHHHHHHHHHHHHH-HHHHHhHHHH
Q 014323 94 TSTHEGENLLASFIIIASLLLL-LLVLGNLTIY 125 (427)
Q Consensus 94 ~~~~~~E~~f~i~~~i~G~~~f-a~lig~i~~~ 125 (427)
.|.+..|..+.+.+++.+++.- +++++++-++
T Consensus 8 ~~~s~~e~aigltv~f~~~L~PagWVLshL~~Y 40 (44)
T PF02285_consen 8 EPLSPAEQAIGLTVCFVTFLGPAGWVLSHLESY 40 (44)
T ss_dssp S---HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3567889999999998887776 5888887664
No 81
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.35 E-value=1.2e+02 Score=30.88 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=44.9
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 95 STHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 95 ~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
+......+..+++.++..++.++++-.+..++-+...-.++++...+++++-+|+..-+++++.|+|+
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq 246 (386)
T PRK12468 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQ 246 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 33344445555555555555555555555555555555566677778899999999999999998885
No 82
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=28.71 E-value=1.5e+02 Score=29.64 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=46.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 97 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 97 ~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
.....+..++..+++.++.++++-.+..+.-+...-..+++...+++++-+|+..=+++++.|+|+
T Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~ 239 (347)
T TIGR00328 174 QAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQ 239 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344556666666666666666655555665555555566777778899999999999999998885
No 83
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=28.43 E-value=1.3e+02 Score=30.31 Aligned_cols=51 Identities=18% Similarity=-0.004 Sum_probs=32.6
Q ss_pred cceeecCCcEEEe-cCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
....+.||...-. --...+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 248 ~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~~ 300 (367)
T TIGR03404 248 AIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVGY 300 (367)
T ss_pred EEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEEE
Confidence 4455666665432 2233678999999999988644 23222 25799999653
No 84
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.53 E-value=1.6e+02 Score=29.28 Aligned_cols=67 Identities=7% Similarity=0.049 Sum_probs=46.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 014323 97 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNH 163 (427)
Q Consensus 97 ~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y 163 (427)
.....++..+..+++.++.++++-.+..+.-+...-.++++...+++++-+|+..-+++++.|+|+-
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 173 GLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3444566666666666666665555556555555555677777788999999999999999988864
No 85
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=26.69 E-value=3e+02 Score=29.00 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 014323 77 CFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTI 124 (427)
Q Consensus 77 slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~ 124 (427)
++--.+..+.++|||-+.| +.+..+.-.+.+.+...+++-+.+-+..
T Consensus 282 Tlsr~LlLIVSlGYGIVkP-~Lg~~l~rv~~ig~~~~i~s~i~~l~~~ 328 (518)
T KOG2568|consen 282 TLSRLLLLIVSLGYGIVKP-TLGGTLLRVCQIGVIYFIASEILGLARV 328 (518)
T ss_pred HHHHHHHHHHhcCcceEec-CcchHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4555667788899999987 5555666655555555555555554443
No 86
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.23 E-value=91 Score=27.26 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhh
Q 014323 237 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 278 (427)
Q Consensus 237 d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~ 278 (427)
...++++.|++|...+.. +++. ..++|||+.|--+
T Consensus 62 s~edEfv~ILeGE~~l~~-d~~e------~~lrpGD~~gFpA 96 (161)
T COG3837 62 SAEDEFVYILEGEGTLRE-DGGE------TRLRPGDSAGFPA 96 (161)
T ss_pred ccCceEEEEEcCceEEEE-CCee------EEecCCceeeccC
Confidence 456799999999987665 3342 5899999988654
No 87
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=25.98 E-value=30 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCC-CCCcccccccccc
Q 014323 395 QFFTYVRRSVKRNGGL-PGGRVNITLAASE 423 (427)
Q Consensus 395 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 423 (427)
|+|+-++..+++.|.+ ++++..+.+|+|-
T Consensus 2 Rla~~Ll~l~~~~~~~~~~~~~~~~~~lt~ 31 (76)
T PF13545_consen 2 RLARFLLELAERFGRRQDGDGIRIPLPLTQ 31 (76)
T ss_dssp HHHHHHHHHHHHHEEEEETTEEEEEEESSH
T ss_pred hHHHHHHHHHHHHCCCCCCCCceEEecCCH
Confidence 8999999999999886 4677777777763
No 88
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=25.44 E-value=2.2e+02 Score=19.27 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHH
Q 014323 103 LASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKARE 142 (427)
Q Consensus 103 f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~ 142 (427)
++.+.++.-++....+...++.+-.......++++..-++
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555556666655555555555555444
No 89
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.22 E-value=1e+02 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhcCC-----HHHHHHHHHHH
Q 014323 140 AREIEQWRTFEMLS-----QSLQQRVRNHQ 164 (427)
Q Consensus 140 ~~~l~~~m~~~~lp-----~~L~~rv~~y~ 164 (427)
..++.++++.+++| .+|..|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 45678888888888 56777777663
No 90
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=24.60 E-value=2.8e+02 Score=20.08 Aligned_cols=50 Identities=8% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhhHHHHHhhhHHHhhhcCCCCCchhhHHHHhHHHHHHHH
Q 014323 353 AWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRR 402 (427)
Q Consensus 353 ~~~~~~~r~~~~~~~~aeery~~~~~~~p~~~~~~~~~~~AS~~~~~~~~ 402 (427)
.|....+|-......+=-..|..++..+|.....+|-...+.||+-.-.+
T Consensus 2 ~W~EFCE~HA~aaA~dfAk~~~~f~~~nP~~a~~~~~~~F~~kF~d~F~~ 51 (59)
T PF08916_consen 2 GWREFCERHARAAARDFAKAFRRFINENPQYARPLSHRSFSRKFADLFQE 51 (59)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-GGG-STTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHH
Confidence 36666666655555555668899999999998889999999999877654
No 91
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=24.58 E-value=2.7e+02 Score=25.09 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=37.0
Q ss_pred HHHHHHHHHHchhhhhhh---hchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHhhhcCCCCC
Q 014323 311 TDDLRAIVYQYWQHRNHN---MQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPS 385 (427)
Q Consensus 311 ~~df~~ll~~~P~~~l~~---~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~~~p~~~~ 385 (427)
...|+.++..||+..... +.+... ...+.+..+.-.+-.........|-.|++.++++||+...
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l-----------~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAEL-----------RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 468889999998544321 212111 1234444443333333344566899999999999998764
No 92
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=24.07 E-value=1.2e+02 Score=19.46 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 014323 344 TSKACVIQAAWCRYKKRKLEG 364 (427)
Q Consensus 344 ~~~~~~~q~~~~~~~~r~~~~ 364 (427)
-.++.+|+..|++.++|+...
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999888753
No 93
>PRK11171 hypothetical protein; Provisional
Probab=23.59 E-value=1.7e+02 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred cceeecCCcEEEecCC--CCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd--~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
....++||.-.-.... ..+++++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~--~g~-----~~~L~~GDsi~ 112 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL--EGK-----THALSEGGYAY 112 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3445677764433322 24689999999999876 343 25799999764
No 94
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.57 E-value=7e+02 Score=27.66 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=34.7
Q ss_pred hcCCChhhHHHHHHHHHHHHhh-----cCcccccCCHHHHHHHHhhccc
Q 014323 180 LNNLPVNLNWEMKSELCLEVLK-----KVPMFQMMGKSILSEMCKCLKP 223 (427)
Q Consensus 180 l~~Lp~~Lr~~i~~~l~~~~L~-----~v~~F~~l~~~~l~~l~~~l~~ 223 (427)
.+.||++||..|..+....... .-.+++++|++....|+.++-.
T Consensus 370 ~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 370 RRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred hccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 3579999999999999877665 2357788999888888877744
No 95
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=22.57 E-value=95 Score=23.59 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=29.1
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccce
Q 014323 177 ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPV 224 (427)
Q Consensus 177 ~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~ 224 (427)
.++|..||+.+|.++...+ --+..++++.+..+...++.+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 5688899999888877665 355678888888887766543
No 96
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=22.43 E-value=1.7e+02 Score=25.93 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=23.5
Q ss_pred CCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 238 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 238 ~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 127 ~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 157 (185)
T PRK09943 127 QGEEIGTVLEGEIVLTI--NGQ-----DYHLVAGQSYA 157 (185)
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEecCCCEEE
Confidence 34689999999999776 333 35799999764
No 97
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=22.33 E-value=1.3e+02 Score=16.43 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014323 346 KACVIQAAWCRYKKRKL 362 (427)
Q Consensus 346 ~~~~~q~~~~~~~~r~~ 362 (427)
++..+|..|+.+..|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46789999999877753
No 98
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=21.62 E-value=87 Score=32.15 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCCeechhhhhccCCCCCCCCCCCcceeEEEcc-eEEEEEecHHHHHHHHHHc
Q 014323 270 TGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 270 ~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~-~~~ll~i~~~df~~ll~~~ 321 (427)
+||-||-.++. +..|+.+++..-+ +|.++.+++.+|.+++.+.
T Consensus 1 eGddfgklalv---------nd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALV---------NDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccc---------cccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 58889998874 4445567766654 6999999999999999886
No 99
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=21.57 E-value=1.4e+02 Score=26.00 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=31.2
Q ss_pred CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEe
Q 014323 239 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAI 309 (427)
Q Consensus 239 ~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i 309 (427)
.+++.+|++|.+.+.. +|+ ....++||++=- |+ .++.+..+-..+.+++.
T Consensus 95 YDEi~~VlEG~L~i~~--~G~-----~~~A~~GDvi~i--------Pk------Gs~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISI--DGQ-----TVTAKPGDVIFI--------PK------GSTITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEEE--TTE-----EEEEETT-EEEE---------T------T-EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEEE--CCE-----EEEEcCCcEEEE--------CC------CCEEEEecCCCEEEEEE
Confidence 5789999999998873 455 357889987631 11 13445555566666665
No 100
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=21.52 E-value=2e+02 Score=26.43 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=48.3
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEE
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 299 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~ 299 (427)
......+.+|..+-.....+.++.+|++|.+. +++ ..+.+||+.=.-. .+..+.+
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~-------g~y~~Gd~i~~p~--------------~~~H~p~ 182 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DET-------GVYGVGDFEEADG--------------SVQHQPR 182 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCC-------CccCCCeEEECCC--------------CCCcCcc
Confidence 45677889999999888888999999999963 222 3578888753221 1244566
Q ss_pred Ecc--eEEEEEecHHHH
Q 014323 300 SVT--NVEAFAINTDDL 314 (427)
Q Consensus 300 Al~--~~~ll~i~~~df 314 (427)
+.+ +|.++.+.-..+
T Consensus 183 a~~~~~Cicl~v~dapl 199 (215)
T TIGR02451 183 TVSGGDCLCLAVLDAPL 199 (215)
T ss_pred cCCCCCeEEEEEecCCc
Confidence 664 488888765544
No 101
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=21.47 E-value=2.3e+02 Score=25.84 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHHHhhCCCCCCccccccccc
Q 014323 392 YATQFFTYVRRSVKRNGGLPGGRVNITLAAS 422 (427)
Q Consensus 392 ~AS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (427)
...|+|..+++..++.|....++..|.+|+|
T Consensus 156 ~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt 186 (235)
T PRK11161 156 AEERLAAFIYNLSRRFAQRGFSPREFRLTMT 186 (235)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceeEcccc
Confidence 4569999999999988766555556666765
No 102
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=21.31 E-value=2.1e+02 Score=30.87 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 97 HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 97 ~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
.....+...+..++..+..++++-.+.++.-+...-.++.+...+|+++-+|+..=+++++.|+|+
T Consensus 437 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~ 502 (609)
T PRK12772 437 YIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQ 502 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344445555565666666666665666666555555667777788999999999999999999885
No 103
>TIGR02523 type_IV_pilV type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc.
Probab=21.25 E-value=4.9e+02 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=18.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHH
Q 014323 96 THEGENLLASFIIIASLLLLLLVLG 120 (427)
Q Consensus 96 ~~~~E~~f~i~~~i~G~~~fa~lig 120 (427)
.+..|.+++++++.+|++-++-+..
T Consensus 4 fTLIEvLVAl~Ilaigllg~~~~~~ 28 (139)
T TIGR02523 4 FSMIEVLVALLVLAIGVLGMAALQL 28 (139)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999998888765555443
No 104
>PRK06298 type III secretion system protein; Validated
Probab=21.09 E-value=2.6e+02 Score=28.07 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 014323 102 LLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNH 163 (427)
Q Consensus 102 ~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y 163 (427)
+..++.-++..++.++++-.+..+.-+...-..+++...+++++-+|+..-+++++.|+|+-
T Consensus 180 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~ 241 (356)
T PRK06298 180 FKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQI 241 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 33434444444444444444444444444445566666778888888888888888888753
No 105
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.90 E-value=1.6e+02 Score=24.19 Aligned_cols=12 Identities=25% Similarity=0.121 Sum_probs=10.2
Q ss_pred hhHHHHhHHHHH
Q 014323 388 GTAIYATQFFTY 399 (427)
Q Consensus 388 ~~~~~AS~~~~~ 399 (427)
|..++|.|||+.
T Consensus 39 ~~~~lAgrfAaK 50 (116)
T PRK14663 39 PVASIAGRFAAK 50 (116)
T ss_pred HHHHHHHHHHHH
Confidence 678999999975
No 106
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=20.89 E-value=2.6e+02 Score=18.47 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHH
Q 014323 134 EEIKSKAREIEQWRTFE-MLSQSLQQRVRNHQQYVWQ 169 (427)
Q Consensus 134 ~~~~~~~~~l~~~m~~~-~lp~~L~~rv~~y~~~~w~ 169 (427)
.-|.+-+.++.+||... .++..++.|+..+++-.+.
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 46888899999999864 6789999999999986553
No 107
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.75 E-value=1.5e+02 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=10.4
Q ss_pred hhHHHHhHHHHH
Q 014323 388 GTAIYATQFFTY 399 (427)
Q Consensus 388 ~~~~~AS~~~~~ 399 (427)
|+.++|.|||+.
T Consensus 45 ~~~~lAgrfAaK 56 (125)
T PRK14660 45 RAERLAARFAAK 56 (125)
T ss_pred HHHHHHHHHHHH
Confidence 688999999975
No 108
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=20.63 E-value=3.3e+02 Score=21.62 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCC
Q 014323 131 IKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMG 210 (427)
Q Consensus 131 ~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~ 210 (427)
.+-.+.+.++..+++|.+.++++.. +..++...-+. -.+|.. +.+.-.+.. .-...+..++
T Consensus 28 ~~g~qi~~nls~l~~W~~~~~l~~~----~~~~l~~l~Qa------~~lL~~-~k~~~~d~~--------~~~~~c~~Ln 88 (105)
T PF01843_consen 28 SKGVQIRYNLSELEDWARSHGLEEA----AEEHLQPLSQA------ANLLQL-RKSTLQDWD--------SLRETCPSLN 88 (105)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTSTTH-----HHHCHHHHHH------HHHCCC---SSHHHHH--------HHCCCTTTS-
T ss_pred ccHHHHHHHHHHHHHHHHhcccchh----HHHHHHHHHHH------HHHHHh-cCcchhHHH--------HHHHHcccCC
Confidence 3456788888999999999999988 55666554322 233333 433222221 1123344788
Q ss_pred HHHHHHHHhhccc
Q 014323 211 KSILSEMCKCLKP 223 (427)
Q Consensus 211 ~~~l~~l~~~l~~ 223 (427)
+..+..|....++
T Consensus 89 ~~Qi~~iL~~Y~~ 101 (105)
T PF01843_consen 89 PAQIRKILSNYQP 101 (105)
T ss_dssp HHHHHHHHCCB--
T ss_pred HHHHHHHHHhCCC
Confidence 8888888766554
No 109
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=20.44 E-value=3.7e+02 Score=25.15 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHchhhhhh---hhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHhhhcCCCCCc
Q 014323 310 NTDDLRAIVYQYWQHRNH---NMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSK 386 (427)
Q Consensus 310 ~~~df~~ll~~~P~~~l~---~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~~~p~~~~~ 386 (427)
..+.|+.++++||+.... .+++...- ..+.+..+.-.+--.....-..|-.|++.++++||+....
T Consensus 143 A~~~~~~li~~yP~S~ya~~A~~rl~~l~-----------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~ 211 (243)
T PRK10866 143 AFRDFSKLVRGYPNSQYTTDATKRLVFLK-----------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT 211 (243)
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH
Confidence 347899999999854422 22222111 1222222221111111123567899999999999998764
Q ss_pred h
Q 014323 387 F 387 (427)
Q Consensus 387 ~ 387 (427)
-
T Consensus 212 ~ 212 (243)
T PRK10866 212 R 212 (243)
T ss_pred H
Confidence 3
No 110
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.21 E-value=5e+02 Score=23.71 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHhhhh---hhHHHHHHHHHHHHHHhh
Q 014323 112 LLLLLLVLGNLTIYLQSGTI---KLEEIKSKAREIEQWRTF 149 (427)
Q Consensus 112 ~~~fa~lig~i~~~l~~~~~---~~~~~~~~~~~l~~~m~~ 149 (427)
+++-|.++|.+.++++..-. +.+++++.+++.++.++.
T Consensus 50 ilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~e 90 (201)
T COG1422 50 ILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFRE 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666655443 334555555555554443
No 111
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.01 E-value=3.5e+02 Score=29.15 Aligned_cols=65 Identities=20% Similarity=0.097 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Q 014323 98 EGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRN 162 (427)
Q Consensus 98 ~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~ 162 (427)
....+..++..++..++.++++-.+..++-+...-.++++...+++++-+|+..-+++++.|+|+
T Consensus 473 il~~i~~ll~~Lvl~vllvllVIAiiD~~~QR~~f~KkLKMSKQEVKdE~KEsEGDPeIKaRRRq 537 (646)
T PRK12773 473 AVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQ 537 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 44445555555555555555555555555444445566667778899999999999999998875
Done!