Query 014323
Match_columns 427
No_of_seqs 530 out of 2923
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 2.2E-33 7.7E-38 258.2 15.3 198 123-336 1-198 (212)
2 3bpz_A Potassium/sodium hyperp 100.0 3.9E-32 1.3E-36 248.1 21.3 180 127-322 2-181 (202)
3 2ptm_A Hyperpolarization-activ 100.0 6.7E-32 2.3E-36 245.6 21.5 180 128-322 2-181 (198)
4 3beh_A MLL3241 protein; transm 99.9 1.3E-27 4.5E-32 237.1 7.3 181 67-322 155-335 (355)
5 3dn7_A Cyclic nucleotide bindi 99.9 5E-23 1.7E-27 185.8 16.6 174 197-398 6-180 (194)
6 4ev0_A Transcription regulator 99.9 6.2E-21 2.1E-25 174.6 19.2 189 200-417 1-202 (216)
7 3dv8_A Transcriptional regulat 99.9 4.1E-21 1.4E-25 176.3 17.0 191 198-417 3-208 (220)
8 3fx3_A Cyclic nucleotide-bindi 99.9 1.1E-20 3.7E-25 175.8 16.9 193 196-417 9-216 (237)
9 3e97_A Transcriptional regulat 99.9 1.6E-20 5.5E-25 173.9 18.0 190 197-417 5-214 (231)
10 3dkw_A DNR protein; CRP-FNR, H 99.8 1.4E-20 4.6E-25 173.7 16.1 192 197-417 8-217 (227)
11 4f8a_A Potassium voltage-gated 99.8 2E-20 6.8E-25 162.9 14.0 134 176-322 5-138 (160)
12 1zyb_A Transcription regulator 99.8 2.1E-20 7.1E-25 173.8 15.1 194 196-417 16-225 (232)
13 3d0s_A Transcriptional regulat 99.8 2.2E-20 7.5E-25 172.6 14.4 192 197-417 5-216 (227)
14 2gau_A Transcriptional regulat 99.8 1.2E-19 4E-24 168.3 16.3 187 202-417 14-219 (232)
15 2fmy_A COOA, carbon monoxide o 99.8 1.2E-19 4.1E-24 166.9 13.2 176 198-409 4-196 (220)
16 3iwz_A CAP-like, catabolite ac 99.8 7.6E-19 2.6E-23 162.2 17.5 184 197-408 10-215 (230)
17 1ft9_A Carbon monoxide oxidati 99.8 4.2E-19 1.4E-23 163.6 14.7 175 199-409 1-192 (222)
18 3ryp_A Catabolite gene activat 99.8 2E-18 6.9E-23 157.1 17.9 177 204-408 2-195 (210)
19 2oz6_A Virulence factor regula 99.8 2.2E-18 7.6E-23 156.5 16.9 184 209-417 1-203 (207)
20 3gyd_A CNMP-BD protein, cyclic 99.8 2.1E-18 7.3E-23 155.1 15.9 136 176-322 13-153 (187)
21 3kcc_A Catabolite gene activat 99.8 3.5E-18 1.2E-22 161.6 18.2 174 207-408 55-245 (260)
22 3ocp_A PRKG1 protein; serine/t 99.8 1.2E-18 4.1E-23 148.4 13.1 126 182-322 7-132 (139)
23 1o5l_A Transcriptional regulat 99.8 6.9E-19 2.3E-23 161.3 12.4 167 203-398 4-176 (213)
24 3idb_B CAMP-dependent protein 99.8 2.3E-18 7.8E-23 150.6 15.1 124 188-322 28-151 (161)
25 2pqq_A Putative transcriptiona 99.8 1.2E-18 4.1E-23 149.4 11.7 115 197-322 4-119 (149)
26 3mdp_A Cyclic nucleotide-bindi 99.8 2.5E-18 8.5E-23 146.4 12.4 124 198-332 6-131 (142)
27 1wgp_A Probable cyclic nucleot 99.8 1E-18 3.5E-23 148.3 9.6 125 198-322 6-130 (137)
28 3e6c_C CPRK, cyclic nucleotide 99.8 8.4E-18 2.9E-22 157.8 14.7 186 200-417 11-216 (250)
29 2z69_A DNR protein; beta barre 99.7 4.8E-17 1.6E-21 140.3 13.7 116 197-322 11-127 (154)
30 3pna_A CAMP-dependent protein 99.7 9.2E-17 3.2E-21 139.3 13.9 115 193-322 33-147 (154)
31 3la7_A Global nitrogen regulat 99.7 2.3E-16 7.8E-21 147.5 16.1 180 211-417 30-232 (243)
32 1vp6_A CNBD, cyclic-nucleotide 99.7 1.6E-16 5.4E-21 134.7 13.5 110 196-322 9-118 (138)
33 3shr_A CGMP-dependent protein 99.7 2E-16 6.9E-21 152.2 14.7 129 179-322 20-148 (299)
34 2bgc_A PRFA; bacterial infecti 99.7 7.7E-16 2.6E-20 143.3 17.7 181 208-417 3-209 (238)
35 2d93_A RAP guanine nucleotide 99.7 2.8E-17 9.7E-22 139.0 5.8 124 184-322 2-127 (134)
36 1o7f_A CAMP-dependent RAP1 gua 99.7 4.2E-16 1.4E-20 159.5 14.2 138 183-332 27-165 (469)
37 4ava_A Lysine acetyltransferas 99.7 7.5E-16 2.6E-20 150.6 14.7 113 197-322 12-125 (333)
38 3shr_A CGMP-dependent protein 99.7 1.3E-15 4.5E-20 146.5 15.4 118 194-322 153-272 (299)
39 3tnp_B CAMP-dependent protein 99.6 1.9E-15 6.5E-20 152.8 15.4 124 188-322 135-258 (416)
40 2qcs_B CAMP-dependent protein 99.6 5.7E-15 1.9E-19 141.3 17.3 127 194-333 153-281 (291)
41 3of1_A CAMP-dependent protein 99.6 3E-15 1E-19 139.2 12.7 114 195-322 122-235 (246)
42 2qcs_B CAMP-dependent protein 99.6 6.2E-15 2.1E-19 141.0 14.8 118 190-322 31-148 (291)
43 3of1_A CAMP-dependent protein 99.6 2.9E-15 1E-19 139.2 12.1 112 196-322 5-116 (246)
44 4din_B CAMP-dependent protein 99.6 3.7E-15 1.3E-19 148.9 11.8 120 193-322 243-363 (381)
45 3b02_A Transcriptional regulat 99.6 8.9E-15 3E-19 131.8 11.2 158 224-417 2-178 (195)
46 4din_B CAMP-dependent protein 99.5 1.3E-14 4.6E-19 144.8 10.9 117 191-322 123-239 (381)
47 3tnp_B CAMP-dependent protein 99.5 2E-14 6.8E-19 145.3 12.0 114 198-322 267-387 (416)
48 4h33_A LMO2059 protein; bilaye 99.5 5.2E-15 1.8E-19 126.2 5.4 93 73-165 43-135 (137)
49 1o7f_A CAMP-dependent RAP1 gua 99.5 8.5E-14 2.9E-18 142.3 14.8 116 193-322 332-449 (469)
50 2zcw_A TTHA1359, transcription 99.5 3.1E-14 1E-18 128.9 9.6 164 217-417 1-185 (202)
51 3vou_A ION transport 2 domain 99.5 7.5E-14 2.6E-18 120.7 9.9 87 73-159 52-148 (148)
52 4f7z_A RAP guanine nucleotide 99.4 5.3E-13 1.8E-17 149.0 15.0 134 179-325 24-160 (999)
53 3cf6_E RAP guanine nucleotide 99.4 3.5E-13 1.2E-17 144.1 12.5 131 177-322 12-144 (694)
54 4f7z_A RAP guanine nucleotide 99.4 4.7E-12 1.6E-16 141.3 16.6 131 177-322 317-449 (999)
55 3eff_K Voltage-gated potassium 99.4 2.2E-12 7.7E-17 110.2 9.4 92 70-162 37-129 (139)
56 2a9h_A Voltage-gated potassium 99.3 3E-12 1E-16 111.2 5.6 66 69-134 80-145 (155)
57 2ih3_C Voltage-gated potassium 99.2 5.6E-12 1.9E-16 105.2 5.9 64 69-132 57-120 (122)
58 2q67_A Potassium channel prote 99.2 3.3E-11 1.1E-15 99.2 6.7 59 73-131 49-107 (114)
59 3pjs_K KCSA, voltage-gated pot 99.2 3.7E-12 1.3E-16 112.2 0.6 65 70-134 64-128 (166)
60 3ldc_A Calcium-gated potassium 99.2 5.5E-11 1.9E-15 91.9 7.1 54 73-126 28-81 (82)
61 2k1e_A Water soluble analogue 99.1 6.1E-12 2.1E-16 101.7 1.1 62 71-132 38-99 (103)
62 3ouf_A Potassium channel prote 99.1 6.9E-11 2.4E-15 94.3 7.0 57 73-129 32-88 (97)
63 1orq_C Potassium channel; volt 99.0 1.5E-10 5.3E-15 106.6 5.9 59 70-128 162-220 (223)
64 3um7_A Potassium channel subfa 98.9 2.6E-09 8.8E-14 102.4 9.1 57 73-129 115-171 (309)
65 2qks_A KIR3.1-prokaryotic KIR 98.8 6.7E-09 2.3E-13 100.5 6.8 58 73-130 78-135 (321)
66 1p7b_A Integral membrane chann 98.7 7E-09 2.4E-13 100.7 6.0 59 72-130 95-153 (333)
67 1xl4_A Inward rectifier potass 98.7 1.1E-08 3.8E-13 98.2 5.7 58 71-128 80-137 (301)
68 2r9r_B Paddle chimera voltage 98.7 9.4E-09 3.2E-13 106.1 4.8 64 68-131 370-433 (514)
69 3um7_A Potassium channel subfa 98.7 1.1E-08 3.8E-13 97.9 4.9 61 73-133 224-290 (309)
70 3ukm_A Potassium channel subfa 98.6 4.9E-08 1.7E-12 92.1 7.4 56 73-128 93-148 (280)
71 3ukm_A Potassium channel subfa 98.5 5E-08 1.7E-12 92.1 4.9 57 73-129 201-264 (280)
72 4gx0_A TRKA domain protein; me 98.4 3.3E-07 1.1E-11 95.8 7.5 54 73-126 51-105 (565)
73 1lnq_A MTHK channels, potassiu 98.4 1.5E-08 5.3E-13 98.9 -2.7 57 73-129 45-101 (336)
74 3sya_A G protein-activated inw 98.1 2.4E-06 8.1E-11 82.8 6.6 61 72-132 90-152 (340)
75 3spc_A Inward-rectifier K+ cha 98.0 5.4E-06 1.8E-10 80.4 6.2 60 71-130 92-153 (343)
76 3rvy_A ION transport protein; 97.3 0.00011 3.9E-09 69.6 3.3 65 67-131 174-244 (285)
77 3fjs_A Uncharacterized protein 81.4 7.4 0.00025 30.5 8.5 67 221-308 38-104 (114)
78 3rns_A Cupin 2 conserved barre 79.1 6.5 0.00022 35.1 8.2 69 220-309 38-106 (227)
79 2ozj_A Cupin 2, conserved barr 78.4 8.2 0.00028 29.9 7.8 64 225-309 44-107 (114)
80 3kg2_A Glutamate receptor 2; I 77.0 3.3 0.00011 44.3 6.5 55 73-128 563-617 (823)
81 2pfw_A Cupin 2, conserved barr 74.1 19 0.00063 27.7 8.8 67 222-309 37-103 (116)
82 1yhf_A Hypothetical protein SP 74.0 18 0.0006 27.8 8.6 67 222-309 43-109 (115)
83 2kxw_B Sodium channel protein 73.7 3 0.0001 24.2 2.8 19 343-361 5-23 (27)
84 2l53_B CAM, voltage-gated sodi 73.1 3.3 0.00011 24.9 2.9 20 343-362 5-24 (31)
85 3lwc_A Uncharacterized protein 72.0 11 0.00037 30.0 6.9 45 223-275 44-88 (119)
86 4dxw_A Navrh, ION transport pr 67.1 4 0.00014 36.4 3.7 60 68-127 160-224 (229)
87 4e2g_A Cupin 2 conserved barre 65.7 25 0.00084 27.5 7.9 48 221-275 43-90 (126)
88 1yfu_A 3-hydroxyanthranilate-3 61.6 11 0.00039 32.2 5.2 59 238-313 54-113 (174)
89 3rns_A Cupin 2 conserved barre 60.0 29 0.001 30.7 8.1 68 221-309 155-223 (227)
90 3d0j_A Uncharacterized protein 57.9 18 0.00061 29.8 5.6 65 233-312 44-110 (140)
91 1zvf_A 3-hydroxyanthranilate 3 57.2 50 0.0017 28.2 8.4 86 212-313 12-115 (176)
92 1dgw_A Canavalin; duplicated s 56.2 14 0.00048 31.6 5.0 53 221-276 43-95 (178)
93 1o5u_A Novel thermotoga mariti 55.3 66 0.0023 24.4 9.7 47 221-275 33-79 (101)
94 2gu9_A Tetracenomycin polyketi 55.2 24 0.00084 26.6 6.0 47 222-275 24-73 (113)
95 2bnm_A Epoxidase; oxidoreducta 54.7 28 0.00094 29.8 6.8 48 225-275 123-173 (198)
96 1v70_A Probable antibiotics sy 54.3 30 0.001 25.4 6.3 47 222-275 31-78 (105)
97 3bcw_A Uncharacterized protein 54.3 13 0.00045 29.8 4.2 46 224-276 54-99 (123)
98 3h8u_A Uncharacterized conserv 53.3 18 0.00063 28.3 5.0 49 221-275 41-90 (125)
99 3d82_A Cupin 2, conserved barr 51.8 31 0.001 25.5 5.9 51 239-310 50-100 (102)
100 2i45_A Hypothetical protein; n 51.5 12 0.00042 28.5 3.5 68 226-313 35-102 (107)
101 2q30_A Uncharacterized protein 50.8 59 0.002 24.2 7.6 67 223-309 37-105 (110)
102 2pyt_A Ethanolamine utilizatio 49.1 53 0.0018 26.4 7.2 45 223-276 61-105 (133)
103 4axo_A EUTQ, ethanolamine util 48.4 48 0.0016 27.6 6.9 31 238-275 83-113 (151)
104 3es4_A Uncharacterized protein 46.5 25 0.00085 28.0 4.6 45 225-276 48-92 (116)
105 2qnk_A 3-hydroxyanthranilate 3 44.5 46 0.0016 30.7 6.6 60 237-313 49-108 (286)
106 3ibm_A Cupin 2, conserved barr 43.6 33 0.0011 28.8 5.3 46 223-275 60-105 (167)
107 2fqp_A Hypothetical protein BP 43.3 14 0.00046 27.8 2.6 48 223-275 22-70 (97)
108 3jzv_A Uncharacterized protein 42.2 29 0.00098 29.3 4.7 45 224-275 58-102 (166)
109 3es1_A Cupin 2, conserved barr 42.1 21 0.00072 30.5 3.8 47 222-274 82-128 (172)
110 3kgz_A Cupin 2 conserved barre 41.5 30 0.001 28.8 4.7 45 224-275 49-93 (156)
111 4b29_A Dimethylsulfoniopropion 41.5 41 0.0014 29.9 5.6 33 237-275 150-182 (217)
112 3nw4_A Gentisate 1,2-dioxygena 40.6 48 0.0016 32.0 6.5 78 223-321 283-360 (368)
113 2opk_A Hypothetical protein; p 39.5 30 0.001 26.8 4.1 34 237-275 51-84 (112)
114 1fi2_A Oxalate oxidase, germin 39.4 53 0.0018 28.4 6.2 54 221-276 74-131 (201)
115 1sfn_A Conserved hypothetical 39.1 98 0.0033 27.6 8.1 44 223-275 54-97 (246)
116 2d40_A Z3393, putative gentisa 38.9 61 0.0021 30.9 7.0 75 223-318 272-346 (354)
117 1y9q_A Transcriptional regulat 38.6 58 0.002 27.5 6.3 45 224-275 109-155 (192)
118 1o4t_A Putative oxalate decarb 38.3 43 0.0015 26.6 5.1 46 223-275 61-107 (133)
119 2vpv_A Protein MIF2, MIF2P; nu 38.0 31 0.0011 29.2 4.2 31 238-275 109-139 (166)
120 1vj2_A Novel manganese-contain 37.8 40 0.0014 26.4 4.7 46 223-275 52-97 (126)
121 1uij_A Beta subunit of beta co 37.6 32 0.0011 33.8 4.8 53 220-275 50-102 (416)
122 4i4a_A Similar to unknown prot 36.9 51 0.0017 25.6 5.3 77 224-321 39-119 (128)
123 1v54_M VIIIB, IX, cytochrome C 35.6 74 0.0025 20.8 4.7 33 94-126 8-41 (46)
124 1lr5_A Auxin binding protein 1 35.6 32 0.0011 28.4 4.0 53 223-275 45-99 (163)
125 2o1q_A Putative acetyl/propion 35.4 40 0.0014 27.6 4.5 51 221-276 46-96 (145)
126 2cav_A Protein (canavalin); vi 35.1 40 0.0014 33.4 5.1 54 220-276 87-140 (445)
127 3h7j_A Bacilysin biosynthesis 35.0 1.1E+02 0.0039 27.0 7.8 47 223-276 149-196 (243)
128 3h7j_A Bacilysin biosynthesis 35.0 62 0.0021 28.8 6.0 47 221-274 36-82 (243)
129 2ea7_A 7S globulin-1; beta bar 35.0 37 0.0013 33.5 4.8 54 220-276 62-115 (434)
130 3i7d_A Sugar phosphate isomera 34.6 37 0.0013 28.3 4.2 47 223-276 47-95 (163)
131 2q1z_B Anti-sigma factor CHRR, 34.4 56 0.0019 28.2 5.5 65 220-309 126-192 (195)
132 1sfn_A Conserved hypothetical 34.0 48 0.0016 29.7 5.1 49 220-275 166-215 (246)
133 2vqa_A SLL1358 protein, MNCA; 33.9 61 0.0021 30.6 6.1 50 223-275 56-107 (361)
134 3bu7_A Gentisate 1,2-dioxygena 33.8 24 0.00081 34.5 3.1 49 222-276 126-174 (394)
135 1j58_A YVRK protein; cupin, de 33.5 55 0.0019 31.3 5.8 51 222-275 82-133 (385)
136 3lag_A Uncharacterized protein 33.5 14 0.00049 28.1 1.2 50 222-275 20-70 (98)
137 4e2q_A Ureidoglycine aminohydr 32.8 67 0.0023 29.4 5.9 68 223-310 74-141 (266)
138 2d5f_A Glycinin A3B4 subunit; 32.3 75 0.0026 31.9 6.6 60 214-275 362-423 (493)
139 2b8m_A Hypothetical protein MJ 32.2 37 0.0013 26.0 3.6 44 225-275 33-77 (117)
140 2vqa_A SLL1358 protein, MNCA; 31.7 73 0.0025 30.0 6.3 53 221-276 236-290 (361)
141 3cew_A Uncharacterized cupin p 31.3 52 0.0018 25.5 4.4 46 223-275 30-77 (125)
142 3c3v_A Arachin ARAH3 isoform; 31.1 74 0.0025 32.1 6.3 60 214-275 367-428 (510)
143 3ht1_A REMF protein; cupin fol 31.1 42 0.0015 26.6 3.9 32 239-275 59-90 (145)
144 3bu7_A Gentisate 1,2-dioxygena 30.8 87 0.003 30.4 6.6 79 222-321 297-378 (394)
145 2f4p_A Hypothetical protein TM 30.7 61 0.0021 26.3 4.8 47 223-275 52-98 (147)
146 3l2h_A Putative sugar phosphat 30.3 61 0.0021 26.6 4.9 45 223-274 50-96 (162)
147 1sq4_A GLXB, glyoxylate-induce 30.1 70 0.0024 29.3 5.6 49 220-275 192-241 (278)
148 1fxz_A Glycinin G1; proglycini 29.2 76 0.0026 31.7 6.0 54 220-275 339-394 (476)
149 1j58_A YVRK protein; cupin, de 27.4 77 0.0026 30.2 5.7 52 222-276 260-313 (385)
150 3nw4_A Gentisate 1,2-dioxygena 27.0 43 0.0015 32.3 3.6 49 223-277 107-155 (368)
151 3fz3_A Prunin; TREE NUT allerg 26.9 1.1E+02 0.0037 31.0 6.6 60 214-275 389-450 (531)
152 1sef_A Conserved hypothetical 26.4 75 0.0026 28.8 5.1 47 222-275 185-232 (274)
153 3ota_A Holo-[acyl-carrier-prot 26.2 71 0.0024 25.7 4.3 12 388-399 48-59 (129)
154 2do1_A Nuclear protein HCC-1; 26.0 59 0.002 22.1 3.1 27 139-165 14-45 (55)
155 1y3t_A Hypothetical protein YX 25.2 1E+02 0.0035 28.5 6.0 46 223-275 50-96 (337)
156 2d40_A Z3393, putative gentisa 25.2 51 0.0018 31.4 3.8 49 222-276 103-151 (354)
157 2e9q_A 11S globulin subunit be 24.9 1.2E+02 0.0042 30.0 6.6 60 214-275 317-378 (459)
158 2oa2_A BH2720 protein; 1017534 24.6 88 0.003 25.2 4.7 50 224-274 48-98 (148)
159 1x82_A Glucose-6-phosphate iso 24.3 94 0.0032 26.5 5.1 34 240-275 97-130 (190)
160 2fmy_A COOA, carbon monoxide o 23.7 1E+02 0.0034 26.2 5.3 31 392-422 139-169 (220)
161 1rc6_A Hypothetical protein YL 23.4 71 0.0024 28.7 4.3 46 223-275 63-110 (261)
162 2o8q_A Hypothetical protein; c 23.0 77 0.0026 24.8 4.0 31 239-275 64-94 (134)
163 2y69_M Cytochrome C oxidase po 22.7 1.4E+02 0.0048 21.3 4.7 32 94-125 32-64 (70)
164 1ft9_A Carbon monoxide oxidati 22.6 1E+02 0.0035 26.3 5.1 31 392-422 135-165 (222)
165 3s7i_A Allergen ARA H 1, clone 22.5 81 0.0028 30.9 4.7 51 222-275 47-97 (418)
166 2xp1_A SPT6; transcription, IW 22.4 1.3E+02 0.0043 25.7 5.4 36 202-243 13-48 (178)
167 1sq4_A GLXB, glyoxylate-induce 22.1 75 0.0026 29.1 4.2 46 223-275 72-119 (278)
168 3ebr_A Uncharacterized RMLC-li 21.8 1.1E+02 0.0036 25.6 4.7 67 220-309 43-113 (159)
169 3la7_A Global nitrogen regulat 21.7 1.1E+02 0.0036 26.7 5.0 31 392-422 165-195 (243)
170 2kvu_A MKL/myocardin-like prot 21.4 78 0.0027 23.0 3.2 27 139-165 30-61 (75)
171 3myx_A Uncharacterized protein 20.8 98 0.0034 27.8 4.5 30 238-274 64-93 (238)
172 2qnk_A 3-hydroxyanthranilate 3 20.6 2.7E+02 0.0094 25.6 7.4 129 151-311 136-277 (286)
173 2phl_A Phaseolin; plant SEED s 20.0 85 0.0029 30.5 4.2 50 220-273 53-103 (397)
174 2e9q_A 11S globulin subunit be 20.0 1.2E+02 0.0041 30.1 5.4 64 213-276 57-139 (459)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=2.2e-33 Score=258.15 Aligned_cols=198 Identities=19% Similarity=0.341 Sum_probs=166.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhc
Q 014323 123 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK 202 (427)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~ 202 (427)
++++++++++..+|+++|+.+++||++++||++|+.||++||+|.|..+++.|++.+++.||+.|+.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 357889999999999999999999999999999999999999999999999999999999999999999999988777 8
Q ss_pred CcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhcc
Q 014323 203 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 282 (427)
Q Consensus 203 v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 282 (427)
+|+|..++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++. +|. .+..+++|++||+.+++..
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~~----~~~~l~~G~~fGe~~~~~~ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DNT----VLAILGKGDLIGSDSLTKE 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SSC----EEEEECTTCEEECSCCSSS
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CCe----EEEEecCCCCcCcHHhccC
Confidence 9999999999999999999999999999999999999999999999999986 232 2689999999999987511
Q ss_pred CCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhh
Q 014323 283 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFK 336 (427)
Q Consensus 283 l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r 336 (427)
. ..+++++++|+++|+++.|++++|.++++.+ |.+....++...+
T Consensus 154 -~------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~--p~~~~~~~~~l~~ 198 (212)
T 3ukn_A 154 -Q------VIKTNANVKALTYCDLQYISLKGLREVLRLY--PEYAQKFVSEIQH 198 (212)
T ss_dssp -S------CCBBCSEEEESSCEEEEEEEHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred -C------CCCcceEEEEcccEEEEEEeHHHHHHHHHHC--hHHHHHHHHHHHH
Confidence 1 1156889999999999999999999999999 4444444444333
No 2
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=100.00 E-value=3.9e-32 Score=248.09 Aligned_cols=180 Identities=19% Similarity=0.338 Sum_probs=164.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCccc
Q 014323 127 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMF 206 (427)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F 206 (427)
++++++..+|+++++.+++||++++||++|+.||++|++|.|. +++.+++.+++.||+.|+.++..+++.++|+++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678899999999999999999999999999999999999997 588999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCC
Q 014323 207 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPD 286 (427)
Q Consensus 207 ~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~ 286 (427)
..++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++||+.+++.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~----- 149 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLT----- 149 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHH-----
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhc-----
Confidence 999999999999999999999999999999999999999999999986 34443 3689999999998862
Q ss_pred CCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 287 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 287 ~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
..++.++++|+++|+++.|++++|.++++.+|
T Consensus 150 ----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 181 (202)
T 3bpz_A 150 ----RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181 (202)
T ss_dssp ----CSBCSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred ----CCCcccEEEEeeEEEEEEEEHHHHHHHHHHCH
Confidence 22458899999999999999999999999994
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=6.7e-32 Score=245.61 Aligned_cols=180 Identities=15% Similarity=0.307 Sum_probs=166.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCcccc
Q 014323 128 SGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQ 207 (427)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~ 207 (427)
+++++..+|+++++.+++||++++||++|+.||++|++|.|. +++.+++++++.||+.||.++..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 467788999999999999999999999999999999999997 5889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCC
Q 014323 208 MMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDP 287 (427)
Q Consensus 208 ~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~ 287 (427)
.++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++. .+|+ . +..+++|++||+.+++.
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~------ 149 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLT------ 149 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHH------
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcC------
Confidence 99999999999999999999999999999999999999999999997 3444 2 57999999999998862
Q ss_pred CCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 288 LSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 288 ~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
..++.++++|+++|+++.|++++|.++++++|
T Consensus 150 ---~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p 181 (198)
T 2ptm_A 150 ---RERRVASVKCETYCTLFSLSVQHFNQVLDEFP 181 (198)
T ss_dssp ---SSCCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred ---CCccceEEEEeeEEEEEEEeHHHHHHHHHHCh
Confidence 22458899999999999999999999999994
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.94 E-value=1.3e-27 Score=237.12 Aligned_cols=181 Identities=19% Similarity=0.305 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHH
Q 014323 67 EKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQW 146 (427)
Q Consensus 67 ~~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~ 146 (427)
+++.+..|..|+||+++||||+||||+.|.|..++++++++|++|++++++.+|.+.+.++....+
T Consensus 155 ~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~-------------- 220 (355)
T 3beh_A 155 QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR-------------- 220 (355)
T ss_dssp CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 345567899999999999999999999999999999999999999999999999998876532110
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceee
Q 014323 147 RTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLY 226 (427)
Q Consensus 147 m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~ 226 (427)
+++.+ ..+.++++|+|.++++++++.++..++.+.|
T Consensus 221 --------------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~ 256 (355)
T 3beh_A 221 --------------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTV 256 (355)
T ss_dssp --------------HHHHH------------------------------HHC----------------------------
T ss_pred --------------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEE
Confidence 00000 2357888999999999999999999999999
Q ss_pred cCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEE
Q 014323 227 VQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEA 306 (427)
Q Consensus 227 ~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~l 306 (427)
+|||.|+++||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+.++..+++|.++|++
T Consensus 257 ~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---------~~~~~~~~~~A~~~~~l 319 (355)
T 3beh_A 257 PAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---------SGEPRSATVSAATTVSL 319 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---------CCCCcceEEEECccEEE
Confidence 999999999999999999999999998754 1 479999999999875 22346889999999999
Q ss_pred EEecHHHHHHHHHHch
Q 014323 307 FAINTDDLRAIVYQYW 322 (427)
Q Consensus 307 l~i~~~df~~ll~~~P 322 (427)
+.|++++|.++++++|
T Consensus 320 ~~i~~~~f~~ll~~~p 335 (355)
T 3beh_A 320 LSLHSADFQMLCSSSP 335 (355)
T ss_dssp ----------------
T ss_pred EEEeHHHHHHHHHHCH
Confidence 9999999999999994
No 5
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.90 E-value=5e-23 Score=185.75 Aligned_cols=174 Identities=11% Similarity=0.125 Sum_probs=125.2
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
..+++++|.|.++++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.+++||++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 457788999999999999999999999999999999999999999999999999999864 677655 67999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHH
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 355 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~ 355 (427)
+...+.. ..++..+++|+++|+++.|++++|.++++++ |.+..+....+...+.
T Consensus 84 e~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l~ 137 (194)
T 3dn7_A 84 DYMAFQK--------QQPADFYIQSVENCELLSITYTEQENLFERI------------------PALERYFRLVYQKSFA 137 (194)
T ss_dssp CHHHHHH--------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------TTHHHHHHHHHHHHHH
T ss_pred ehHHHhc--------CCCCceEEEEECCEEEEEEeHHHHHHHHHhC------------------HHHHHHHHHHHHHHHH
Confidence 8743222 2245789999999999999999999999999 6666667777788888
Q ss_pred HHHHHHhhhhHHHHHhhhHHHhhhcCCCCCchhhHHHHhHHHH
Q 014323 356 RYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFT 398 (427)
Q Consensus 356 ~~~~r~~~~~~~~aeery~~~~~~~p~~~~~~~~~~~AS~~~~ 398 (427)
...+|.......++++||..++.++|++..++|+++||+.+..
T Consensus 138 ~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~ 180 (194)
T 3dn7_A 138 AAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGF 180 (194)
T ss_dssp HHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCC
Confidence 8899999999999999999999999999999999999998765
No 6
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.87 E-value=6.2e-21 Score=174.61 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=152.9
Q ss_pred hhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhh
Q 014323 200 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEEL 278 (427)
Q Consensus 200 L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~ 278 (427)
|+++|+|..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 568899999999999999999999999999999999999999999999999999864 566655 68999999999988
Q ss_pred hhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHH
Q 014323 279 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 358 (427)
Q Consensus 279 l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~ 358 (427)
++ . ..++..+++|+++|+++.|++++|.+++.++ |.+.......+........
T Consensus 79 ~~-~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~ 131 (216)
T 4ev0_A 79 LL-D--------EGERSASAVAVEDTELLALFREDYLALIRRL------------------PLVAHNLAALLARRLREAD 131 (216)
T ss_dssp HH-H--------CCBCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
T ss_pred hc-C--------CCCcceEEEEcCCEEEEEEcHHHHHHHHHHC------------------cHHHHHHHHHHHHHHHHHH
Confidence 76 2 2245789999999999999999999999999 4454444555566667778
Q ss_pred HHHhhhhHHHHHhhhHHHhh----hcCCCCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 359 KRKLEGSLYAKENILQDQKA----EAGGKPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 359 ~r~~~~~~~~aeery~~~~~----~~p~~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
++.......++++|+..++. ..|.+..++++++||+.+. ..+++-+++.|- ..+++|.|
T Consensus 132 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 132 LELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 88888999999999998884 3567788999999999983 334455566663 23344444
No 7
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.86 E-value=4.1e-21 Score=176.33 Aligned_cols=191 Identities=11% Similarity=0.080 Sum_probs=154.3
Q ss_pred HHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCe--e
Q 014323 198 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDF--W 274 (427)
Q Consensus 198 ~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~--f 274 (427)
++++++|+|..+++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.+++||++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 57899999999999999999999999999999999999999999999999999999764 566655 689999999 6
Q ss_pred chhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHH
Q 014323 275 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 354 (427)
Q Consensus 275 Ge~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~ 354 (427)
|+.+++ ...++..+++|+++|+++.|++++|.+++.++ |.+.......+...+
T Consensus 81 g~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 81 SASCIM---------RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDS------------------APVANYTNELMATRF 133 (220)
T ss_dssp GGGGGC---------TTCCCCCEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHh---------CCCCCceEEEEeeeeEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
Confidence 888765 22346889999999999999999999999999 444444445555556
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHhhhcCC----CCCchhhHHHHhHH------HHHHHHHHHhhCC--CCCCcccc
Q 014323 355 CRYKKRKLEGSLYAKENILQDQKAEAGG----KPSKFGTAIYATQF------FTYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 355 ~~~~~r~~~~~~~~aeery~~~~~~~p~----~~~~~~~~~~AS~~------~~~~~~~~~~~~~--~~~~~~~~ 417 (427)
....++.......++++|+..++...++ ...++++.+||+.+ ...+++.+++.|- ..+++|.|
T Consensus 134 ~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 134 SDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 6677788888899999999998877664 34588999999998 3555666666663 23344444
No 8
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.85 E-value=1.1e-20 Score=175.83 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=153.0
Q ss_pred HHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCee
Q 014323 196 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 196 ~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~f 274 (427)
..++|+++|+|..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 4678999999999999999999999999999999999999999999999999999999864 666655 6899999999
Q ss_pred chhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHH
Q 014323 275 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 354 (427)
Q Consensus 275 Ge~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~ 354 (427)
|+..++ .. .++..+++|+++|+++.|++++|.+++.++ |.+.......+....
T Consensus 87 G~~~~~-~~--------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 139 (237)
T 3fx3_A 87 GEAVAL-RN--------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRD------------------PEICISILATTFGHL 139 (237)
T ss_dssp CHHHHH-HT--------CCCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
T ss_pred chHHHh-cC--------CCCCceEEECCceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
Confidence 999886 22 245889999999999999999999999999 344443334444556
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHhhhc-----CCCCCchh--hHHHHhHHH------HHHHHHHHhhCCC-CCCcccc
Q 014323 355 CRYKKRKLEGSLYAKENILQDQKAEA-----GGKPSKFG--TAIYATQFF------TYVRRSVKRNGGL-PGGRVNI 417 (427)
Q Consensus 355 ~~~~~r~~~~~~~~aeery~~~~~~~-----p~~~~~~~--~~~~AS~~~------~~~~~~~~~~~~~-~~~~~~~ 417 (427)
....++.......++++|+..++... |+...++| +.+||+.+. ..+++.+++.|-. .+++|.|
T Consensus 140 ~~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~~~~~~i~I 216 (237)
T 3fx3_A 140 HSLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTVKRNHAEI 216 (237)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECCTTEEEE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEeeCCEEEE
Confidence 66778888889999999999988875 34455666 789999873 3344555555532 2333444
No 9
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.85 E-value=1.6e-20 Score=173.94 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=147.6
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
.++|+++|+|..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 468899999999999999999999999999999999999999999999999999999865 666655 68999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHH
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 355 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~ 355 (427)
+.+++ ...++..+++|+++|+++.|++++|.+++.++| .+.......+...++
T Consensus 83 ~~~~~---------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 83 ETAVL---------AHQERSASVRALTPVRTLMLHREHFELILRRHP------------------RVLWNLAEMLARRVT 135 (231)
T ss_dssp TTTTT---------CCCCCCEEEEESSCEEEEEECHHHHHHHHHHCH------------------HHHHHHHHHHHHHHH
T ss_pred eHHHh---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHCH------------------HHHHHHHHHHHHHHH
Confidence 99875 223568899999999999999999999999993 222222223333334
Q ss_pred HHHHHHhhhhHHHHH-hhhHHHhhhcC----------CCCCchhhHHHHhHH------HHHHHHHHHhhCC--CCCCccc
Q 014323 356 RYKKRKLEGSLYAKE-NILQDQKAEAG----------GKPSKFGTAIYATQF------FTYVRRSVKRNGG--LPGGRVN 416 (427)
Q Consensus 356 ~~~~r~~~~~~~~ae-ery~~~~~~~p----------~~~~~~~~~~~AS~~------~~~~~~~~~~~~~--~~~~~~~ 416 (427)
...++.. ...+++ +|+..++.+.+ .+..++++.+||+.+ ...+++.+++.|- ..+++|.
T Consensus 136 ~~~~~~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 213 (231)
T 3e97_A 136 FLNDELI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVT 213 (231)
T ss_dssp HHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEE
T ss_pred HHHHHHH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEE
Confidence 4444544 567777 89988887665 466788999999988 3455666666662 3344455
Q ss_pred c
Q 014323 417 I 417 (427)
Q Consensus 417 ~ 417 (427)
|
T Consensus 214 i 214 (231)
T 3e97_A 214 L 214 (231)
T ss_dssp E
T ss_pred E
Confidence 4
No 10
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.85 E-value=1.4e-20 Score=173.70 Aligned_cols=192 Identities=10% Similarity=0.110 Sum_probs=153.4
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
.++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.+++||++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 468999999999999999999999999999999999999999999999999999998754 566655 57999999999
Q ss_pred hhhhhccCCCCCCCCCCC-cceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHH
Q 014323 276 EELATSALDPDPLSNIPH-SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAW 354 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~-s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~ 354 (427)
+.+++ ...+ +..+++|+++|+++.|++++|.+++.++ |.+.......+...+
T Consensus 86 ~~~~~---------~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 86 EAMMF---------MDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDN------------------TPLALALLAKLSTRL 138 (227)
T ss_dssp CTTTT---------TTCSBCSSCEEESSCCEEEEEESHHHHHHHSSC------------------THHHHHHHHHHHHHH
T ss_pred eHHhc---------CCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHH
Confidence 98864 2223 6889999999999999999999999999 333333334444445
Q ss_pred HHHHHHHhhhhHHHHHhhhHHHh-hhcCC-------CCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 355 CRYKKRKLEGSLYAKENILQDQK-AEAGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 355 ~~~~~r~~~~~~~~aeery~~~~-~~~p~-------~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
....++.......++++|+..++ ...+. +..++++.+||+.+. ..+++.+++.|- ..+++|.|
T Consensus 139 ~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 217 (227)
T 3dkw_A 139 HQRIDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISI 217 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEE
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 55667788888899999998876 33443 678899999999883 345555666663 34445554
No 11
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=2e-20 Score=162.91 Aligned_cols=134 Identities=19% Similarity=0.332 Sum_probs=112.3
Q ss_pred hhhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEe
Q 014323 176 VENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 255 (427)
Q Consensus 176 e~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~ 255 (427)
.+++++.||+.|+.++..+++.++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 256 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 256 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+. .+..+++|++||+.+++.. ...++.++++|.++|+++.|++++|.++++++|
T Consensus 85 --~~----~~~~~~~G~~fG~~~~~~~-------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 85 --DE----VVAILGKGDVFGDVFWKEA-------TLAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp --TE----EEEEEETTCEEECCTTTCS-------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred --CE----EEEEecCCCEeCcHHHhcC-------cccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 22 2689999999999987511 013568899999999999999999999999994
No 12
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.84 E-value=2.1e-20 Score=173.77 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=156.4
Q ss_pred HHHHhhcCcccccCCHHHHHHHHhh--ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCC
Q 014323 196 CLEVLKKVPMFQMMGKSILSEMCKC--LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGD 272 (427)
Q Consensus 196 ~~~~L~~v~~F~~l~~~~l~~l~~~--l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd 272 (427)
...+++++|+|..+++++++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4667899999999999999999998 999999999999999999999999999999998754 566655 67999999
Q ss_pred eechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHH
Q 014323 273 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQA 352 (427)
Q Consensus 273 ~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~ 352 (427)
+||+.+++ . ..+++..+++|+++|+++.|++++|.+++.++ |.+.......+..
T Consensus 94 ~fG~~~~~-~-------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 94 LIEPQSLF-G-------MNTNYASSYVAHTEVHTVCISKAFVLSDLFRY------------------DIFRLNYMNIVSN 147 (232)
T ss_dssp EECGGGGS-S-------SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGS------------------HHHHHHHHHHHHH
T ss_pred eeeehHHh-C-------CCCCCceEEEEccceEEEEEEHHHHHHHhccC------------------HHHHHHHHHHHHH
Confidence 99999875 1 11226889999999999999999999999999 4444444455555
Q ss_pred HHHHHHHHHhhhhHHHHHhhhHHHhhhc---C--CCCCchhhHHHHhHHH------HHHHHHHHhhCCC--CCCcccc
Q 014323 353 AWCRYKKRKLEGSLYAKENILQDQKAEA---G--GKPSKFGTAIYATQFF------TYVRRSVKRNGGL--PGGRVNI 417 (427)
Q Consensus 353 ~~~~~~~r~~~~~~~~aeery~~~~~~~---p--~~~~~~~~~~~AS~~~------~~~~~~~~~~~~~--~~~~~~~ 417 (427)
.+....++.......++++|+..++... | .+..++++.+||+.+. ..+++.+++.|-- .+++|.|
T Consensus 148 ~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I 225 (232)
T 1zyb_A 148 RAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILI 225 (232)
T ss_dssp HHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEE
Confidence 5677788888888999999999988764 3 3567889999999875 3455556666642 2344444
No 13
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.84 E-value=2.2e-20 Score=172.57 Aligned_cols=192 Identities=19% Similarity=0.212 Sum_probs=153.8
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
.++++++|+|..+++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999999865 566655 68999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHH
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWC 355 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~ 355 (427)
+.+++ ...++..+++|+++|+++.|++++|.+++.++ |.+.......+...+.
T Consensus 83 ~~~~~---------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~ 135 (227)
T 3d0s_A 83 ELSIF---------DPGPRTSSATTITEVRAVSMDRDALRSWIADR------------------PEISEQLLRVLARRLR 135 (227)
T ss_dssp CHHHH---------SCSCCSSEEEESSCEEEEEEEHHHHHHTTSSC------------------HHHHHHHHHHHHHHHH
T ss_pred eHHHc---------CCCCceeEEEEcccEEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHH
Confidence 99876 12246889999999999999999999999999 3443333444555566
Q ss_pred HHHHHHhhhhHHHHHhhhHHHhhh-----------cCCCCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCccc
Q 014323 356 RYKKRKLEGSLYAKENILQDQKAE-----------AGGKPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVN 416 (427)
Q Consensus 356 ~~~~r~~~~~~~~aeery~~~~~~-----------~p~~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~ 416 (427)
...++.......++++|+..++.. .+.+..++++.+||+.+. ..+++.+++.|- ..+++|.
T Consensus 136 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~ 215 (227)
T 3d0s_A 136 RTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVL 215 (227)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 677788888889999999887754 234667899999999764 335555566663 2334454
Q ss_pred c
Q 014323 417 I 417 (427)
Q Consensus 417 ~ 417 (427)
|
T Consensus 216 i 216 (227)
T 3d0s_A 216 I 216 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.82 E-value=1.2e-19 Score=168.26 Aligned_cols=187 Identities=14% Similarity=0.155 Sum_probs=148.8
Q ss_pred cCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhh
Q 014323 202 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 280 (427)
Q Consensus 202 ~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~ 280 (427)
.+|+|..+++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 5789999999999999999999999999999999999999999999999999764 466654 6899999999999876
Q ss_pred ccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHH
Q 014323 281 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 360 (427)
Q Consensus 281 ~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r 360 (427)
. ..++..+++|+++|+++.|++++|.+++.++ |.+.......+...+....++
T Consensus 92 ~---------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 144 (232)
T 2gau_A 92 A---------EETCSSTAIAVENSKVLAIPVEAIEALLKGN------------------TSFCRYFLKALAKELGYAERR 144 (232)
T ss_dssp H---------TSCCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred C---------CCCcceEEEEecceEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 2 2245789999999999999999999999999 445444455566666777888
Q ss_pred HhhhhHHHHHhhhHHHhh----hc------CCCCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 361 KLEGSLYAKENILQDQKA----EA------GGKPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 361 ~~~~~~~~aeery~~~~~----~~------p~~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
...+...++++|+..++. .+ |.+..++++.+||+.+. ..+++.+++.|- ..+++|.|
T Consensus 145 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 219 (232)
T 2gau_A 145 TVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKI 219 (232)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEE
Confidence 888889999999988873 23 45678899999998874 344555566663 22344544
No 15
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.81 E-value=1.2e-19 Score=166.88 Aligned_cols=176 Identities=10% Similarity=0.094 Sum_probs=149.4
Q ss_pred HHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechh
Q 014323 198 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 277 (427)
Q Consensus 198 ~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~ 277 (427)
.+|+++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +.+++||++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997556777755 689999999998
Q ss_pred hhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHH
Q 014323 278 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRY 357 (427)
Q Consensus 278 ~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~ 357 (427)
| +..+++|+++|+++.|++++|.+++.++ |.+.......+...+...
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~~~~~ 127 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEF------------------PAFSLNMVKVLGDLLKNS 127 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHH
Confidence 2 2679999999999999999999999999 455555555666667778
Q ss_pred HHHHhhhhHHHHHhhhHHHhhhcCC-----------CCCchhhHHHHhHHH------HHHHHHHHhhCC
Q 014323 358 KKRKLEGSLYAKENILQDQKAEAGG-----------KPSKFGTAIYATQFF------TYVRRSVKRNGG 409 (427)
Q Consensus 358 ~~r~~~~~~~~aeery~~~~~~~p~-----------~~~~~~~~~~AS~~~------~~~~~~~~~~~~ 409 (427)
.++.......++++|+..++...++ +...+++.+||+.+. ..+++.+++.|-
T Consensus 128 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 196 (220)
T 2fmy_A 128 LTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGI 196 (220)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCC
Confidence 8888899999999999988876553 567899999999875 345566666663
No 16
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.81 E-value=7.6e-19 Score=162.23 Aligned_cols=184 Identities=10% Similarity=0.129 Sum_probs=137.1
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
...+++.++|..+++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 467889999999999999999999999999999999999999999999999999999755 566655 68999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHc-----hhhhhhhhchhhHhhhcccchhhhHHHHH
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY-----WQHRNHNMQPLDIFKFYSQEWRTSKACVI 350 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~-----P~~~l~~~~l~~~~r~~s~~~~~~~~~~~ 350 (427)
+..++. ..+++..+++|+++|+++.|++++|.+++.++ | .-+..+ ...+
T Consensus 88 ~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p-----------------~~~~~~-~~~l 141 (230)
T 3iwz_A 88 EMGLFI--------ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAP-----------------RILYAI-GVQL 141 (230)
T ss_dssp CGGGTS--------CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHH-----------------HHHHHH-HHHH
T ss_pred ehhhhc--------CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCc-----------------HHHHHH-HHHH
Confidence 998751 22245789999999999999999999999998 5 111222 2233
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhhHHHhhhcCC----------CCCchhhHHHHhHHH------HHHHHHHHhhC
Q 014323 351 QAAWCRYKKRKLEGSLYAKENILQDQKAEAGG----------KPSKFGTAIYATQFF------TYVRRSVKRNG 408 (427)
Q Consensus 351 q~~~~~~~~r~~~~~~~~aeery~~~~~~~p~----------~~~~~~~~~~AS~~~------~~~~~~~~~~~ 408 (427)
........++.......++++|+..++..... +..++++.+||+.+. ..+++.+++.|
T Consensus 142 ~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g 215 (230)
T 3iwz_A 142 SKRLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADG 215 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 34445667788888899999999988765432 345688999999875 34555566666
No 17
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.80 E-value=4.2e-19 Score=163.56 Aligned_cols=175 Identities=10% Similarity=0.082 Sum_probs=147.1
Q ss_pred HhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhh
Q 014323 199 VLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 278 (427)
Q Consensus 199 ~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~ 278 (427)
+|+++|+|..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..++||++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 4678999999999999999999999999999999999999999999999999998555777765 68999999999
Q ss_pred hhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHH
Q 014323 279 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 358 (427)
Q Consensus 279 l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~ 358 (427)
. ++.++++|+++|+++.|++++|.+++.++ |.+.......+...++...
T Consensus 76 -----~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~ 124 (222)
T 1ft9_A 76 -----M--------HSGCLVEATERTEVRFADIRTFEQKLQTC------------------PSMAWGLIAILGRALTSCM 124 (222)
T ss_dssp -----S--------CSSCEEEESSCEEEEEECHHHHHHHHHHC------------------GGGHHHHHHHHHHHHHHHH
T ss_pred -----C--------CCCEEEEEccceEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHH
Confidence 1 34789999999999999999999999999 4554444555566667778
Q ss_pred HHHhhhhHHHHHhhhHHHhhhcC-----------CCCCchhhHHHHhHHH------HHHHHHHHhhCC
Q 014323 359 KRKLEGSLYAKENILQDQKAEAG-----------GKPSKFGTAIYATQFF------TYVRRSVKRNGG 409 (427)
Q Consensus 359 ~r~~~~~~~~aeery~~~~~~~p-----------~~~~~~~~~~~AS~~~------~~~~~~~~~~~~ 409 (427)
++...+...++++|+..++...+ .+..++++.+||+.+. ..+++.+++.|.
T Consensus 125 ~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~ 192 (222)
T 1ft9_A 125 RTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGY 192 (222)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCc
Confidence 88888999999999999998766 2456789999998774 345566677773
No 18
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.80 E-value=2e-18 Score=157.14 Aligned_cols=177 Identities=10% Similarity=0.095 Sum_probs=138.2
Q ss_pred cccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhcc
Q 014323 204 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSA 282 (427)
Q Consensus 204 ~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~ 282 (427)
++++.+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~- 78 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE- 78 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTS-
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhc-
Confidence 46678999999999999999999999999999999999999999999999764 566655 67999999999998752
Q ss_pred CCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHh
Q 014323 283 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL 362 (427)
Q Consensus 283 l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~ 362 (427)
..+++..+++|+++|+++.|++++|.+++.++ |.+..+....+........++..
T Consensus 79 -------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~~ 133 (210)
T 3ryp_A 79 -------EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVG 133 (210)
T ss_dssp -------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCceEEEEECCcEEEEEEcHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 22245889999999999999999999999999 44444444444555566777888
Q ss_pred hhhHHHHHhhhHHHhhhcCC----------CCCchhhHHHHhHHH------HHHHHHHHhhC
Q 014323 363 EGSLYAKENILQDQKAEAGG----------KPSKFGTAIYATQFF------TYVRRSVKRNG 408 (427)
Q Consensus 363 ~~~~~~aeery~~~~~~~p~----------~~~~~~~~~~AS~~~------~~~~~~~~~~~ 408 (427)
.....++++|+..++..... +..++++.+||+.+. ..+++.+++.|
T Consensus 134 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 195 (210)
T 3ryp_A 134 NLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQN 195 (210)
T ss_dssp HHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 88889999999887754322 334788999999874 34455556665
No 19
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.79 E-value=2.2e-18 Score=156.47 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=138.7
Q ss_pred CCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCC
Q 014323 209 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDP 287 (427)
Q Consensus 209 l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~ 287 (427)
|++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++....
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~~~~~--- 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLFEKEG--- 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHhcCCC---
Confidence 688999999999999999999999999999999999999999999765 566655 68999999999998751110
Q ss_pred CCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHH
Q 014323 288 LSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLY 367 (427)
Q Consensus 288 ~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~ 367 (427)
..+++..+++|+++|+++.|++++|.++++++| .+.......+...+....++...+...
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~~~~~l~~~~~~~~~~~~~l~~~ 135 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQDS------------------EILYTLGSQMADRLRKTTRKVGDLAFL 135 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000458899999999999999999999999993 333322333344445567778888889
Q ss_pred HHHhhhHHHhhh---cCC-------CCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 368 AKENILQDQKAE---AGG-------KPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 368 ~aeery~~~~~~---~p~-------~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
++++|+..++.. .|+ +..++++.+||+.+. ..+++.+++.|- ..+++|.|
T Consensus 136 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 203 (207)
T 2oz6_A 136 DVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVV 203 (207)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 999999877642 222 456889999998764 334555566663 33344444
No 20
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=2.1e-18 Score=155.08 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=115.8
Q ss_pred hhhhhcCCChhh----HHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEE
Q 014323 176 VENLLNNLPVNL----NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLL 251 (427)
Q Consensus 176 e~~ll~~Lp~~L----r~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~ 251 (427)
+..+.+.+++++ +.+.......++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445555565554 3445555667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 252 TTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 252 ~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
++..+ +|++.+ +..+++|++||+.+++ . ..++.++++|+++|+++.|++++|.++++++|
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l-~--------~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p 153 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI-D--------GMPRSASCVASLPTDFAVLSRDALYQLLANMP 153 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH-H--------CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh-C--------CCCeeEEEEECCCeEEEEEcHHHHHHHHHHCh
Confidence 99765 666655 6799999999999876 2 22458899999999999999999999999993
No 21
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.78 E-value=3.5e-18 Score=161.63 Aligned_cols=174 Identities=11% Similarity=0.116 Sum_probs=136.0
Q ss_pred ccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCC
Q 014323 207 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 285 (427)
Q Consensus 207 ~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p 285 (427)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+..++.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~~---- 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE---- 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTTS----
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHhC----
Confidence 56899999999999999999999999999999999999999999999764 566655 68999999999998751
Q ss_pred CCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhh
Q 014323 286 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGS 365 (427)
Q Consensus 286 ~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~ 365 (427)
..+++..+++|+++|+++.|++++|.+++.++ |.+.......+........++.....
T Consensus 129 ----~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~ 186 (260)
T 3kcc_A 129 ----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVGNLA 186 (260)
T ss_dssp ----TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCceEEEECCCeEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22245889999999999999999999999999 34443334444455566777888888
Q ss_pred HHHHHhhhHHHhhh---cC-------CCCCchhhHHHHhHHH------HHHHHHHHhhC
Q 014323 366 LYAKENILQDQKAE---AG-------GKPSKFGTAIYATQFF------TYVRRSVKRNG 408 (427)
Q Consensus 366 ~~~aeery~~~~~~---~p-------~~~~~~~~~~~AS~~~------~~~~~~~~~~~ 408 (427)
..++++|+..++.. .+ ++..++++..||+.+. ..+++.+++.|
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~G 245 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQN 245 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 89999999877643 22 2335788999999764 44555566666
No 22
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.78 E-value=1.2e-18 Score=148.40 Aligned_cols=126 Identities=21% Similarity=0.340 Sum_probs=113.2
Q ss_pred CCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeee
Q 014323 182 NLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNT 261 (427)
Q Consensus 182 ~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~ 261 (427)
++|..++.+.......++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999965 343
Q ss_pred eEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 262 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 262 ~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
.+..+.+|++||+.+++. ..++.++++|+++|+++.|++++|.++++++|
T Consensus 83 --~~~~~~~G~~fGe~~~l~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILY---------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp --EEEEECTTCEESCHHHHH---------CCCCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred --EEEEeCCCCEeccHHHHC---------CCCcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 258999999999998762 22458899999999999999999999999994
No 23
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.78 E-value=6.9e-19 Score=161.30 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=105.2
Q ss_pred CcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhc
Q 014323 203 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATS 281 (427)
Q Consensus 203 v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~ 281 (427)
-|.|++.++...+.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+..++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTTS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHhc
Confidence 377888999999999999999999999999999999999999999999999764 666655 68999999999998751
Q ss_pred cCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchh-hhHHHHHHHHHHHHHHH
Q 014323 282 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWR-TSKACVIQAAWCRYKKR 360 (427)
Q Consensus 282 ~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~-~~~~~~~q~~~~~~~~r 360 (427)
...++..+++|+++|+++.|++++|.+++.++| .+. .+.+.+.++ .....++
T Consensus 82 --------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~l~~~l~~~-~~~~~~~ 134 (213)
T 1o5l_A 82 --------SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDR------------------ELLLFFLKDVSEH-FRVVSEK 134 (213)
T ss_dssp --------SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCH------------------HHHHHHHHHHHHH-HHHHHHH
T ss_pred --------CCCCceEEEEEccceEEEEEeHHHHHHHHHHCH------------------HHHHHHHHHHHHH-HHHHHHH
Confidence 122458899999999999999999999999993 332 333344444 3456778
Q ss_pred HhhhhHHHHHhhhHHHhhhcC----CCCCchhhHHHHhHHHH
Q 014323 361 KLEGSLYAKENILQDQKAEAG----GKPSKFGTAIYATQFFT 398 (427)
Q Consensus 361 ~~~~~~~~aeery~~~~~~~p----~~~~~~~~~~~AS~~~~ 398 (427)
...+...++++|+..++.+.+ .+..++++.+||+.+..
T Consensus 135 ~~~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~ 176 (213)
T 1o5l_A 135 LFFLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGC 176 (213)
T ss_dssp HHHHHCC-----------------------------------
T ss_pred HHHHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCC
Confidence 888889999999999998888 56778999999988854
No 24
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.78 E-value=2.3e-18 Score=150.57 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEE
Q 014323 188 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 267 (427)
Q Consensus 188 r~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~ 267 (427)
+.+.....+.++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 344455566789999999999999999999999999999999999999999999999999999999866777765 679
Q ss_pred cCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 268 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 268 l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+++|++||+.+++ ...++.++++|+++|+++.|++++|.++++++|
T Consensus 106 ~~~G~~fGe~~~~---------~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 151 (161)
T 3idb_B 106 YDNRGSFGELALM---------YNTPRAATITATSPGALWGLDRVTFRRIIVKNN 151 (161)
T ss_dssp EESCCEECGGGGT---------CCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred cCCCCEechHHHH---------cCCCcccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence 9999999999876 223568899999999999999999999999994
No 25
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.77 E-value=1.2e-18 Score=149.44 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=103.2
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
.++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 457899999999999999999999999999999999999999999999999999999765 466654 68999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+.+++ ...++..+++|+++|+++.|++++|.++++++|
T Consensus 82 ~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 119 (149)
T 2pqq_A 82 ELSLF---------DPGPRTATGTALTEVKLLALGHGDLQPWLNVRP 119 (149)
T ss_dssp GGGGT---------SCEECSSEEEESSCEEEEEEEGGGHHHHHHHCT
T ss_pred hHHhc---------CCCCcceEEEEccceEEEEEeHHHHHHHHHhCc
Confidence 98875 222458899999999999999999999999993
No 26
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.77 E-value=2.5e-18 Score=146.35 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=101.9
Q ss_pred HHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeee-EEEEEcCCCCeec
Q 014323 198 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTS-VFKKYLSTGDFWG 275 (427)
Q Consensus 198 ~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~-~~~~~l~~Gd~fG 275 (427)
++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ ..+..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 47889999999999999999999999999999999999999999999999999999754 444422 0147899999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchh
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPL 332 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~ 332 (427)
+.+++ ...++..+++|+++|+++.|++++|.++++++ |.+....++
T Consensus 86 ~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~--p~~~~~l~~ 131 (142)
T 3mdp_A 86 VSSLI---------KPYHYTSSARATKPVRVVDINGARLREMSENN--QALGQVLMN 131 (142)
T ss_dssp GGGSS---------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC--HHHHHHHHH
T ss_pred hHHHc---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHC--hHHHHHHHH
Confidence 98875 22356889999999999999999999999999 444443333
No 27
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.77 E-value=1e-18 Score=148.26 Aligned_cols=125 Identities=41% Similarity=0.731 Sum_probs=103.2
Q ss_pred HHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechh
Q 014323 198 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 277 (427)
Q Consensus 198 ~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~ 277 (427)
++|+++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 45789999999999999999999999999999999999999999999999999976555677655323499999999999
Q ss_pred hhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 278 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 278 ~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
++++.+...+....++++++++|+++|+++.|++++|.++++++|
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p 130 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCH
Confidence 852112222111122457899999999999999999999999993
No 28
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.75 E-value=8.4e-18 Score=157.79 Aligned_cols=186 Identities=11% Similarity=0.063 Sum_probs=145.7
Q ss_pred hhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhh
Q 014323 200 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEEL 278 (427)
Q Consensus 200 L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~ 278 (427)
+.++..+..+++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC--
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee--
Confidence 344444588999999999999999999999999999999999999999999999764 666655 689999999999
Q ss_pred hhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHH
Q 014323 279 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 358 (427)
Q Consensus 279 l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~ 358 (427)
++ ... +..+++|+++|+++.|++++|.+++.++ |.+.......+........
T Consensus 87 ~l---------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~ 138 (250)
T 3e6c_C 87 LY---------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTD------------------EDMIFEIFKNYLTKVAYYA 138 (250)
T ss_dssp CS---------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHH
T ss_pred ec---------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
Confidence 33 122 5889999999999999999999999999 3444444445555566677
Q ss_pred HHHhhhhHHHHHhhhHHHhhh----cC-------CCCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 359 KRKLEGSLYAKENILQDQKAE----AG-------GKPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 359 ~r~~~~~~~~aeery~~~~~~----~p-------~~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
++.......++++|+..++.. +| .+..++++..||+.+. ..+++.+++.|- ..+++|.|
T Consensus 139 ~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i 216 (250)
T 3e6c_C 139 RQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIV 216 (250)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEE
Confidence 788888899999999877743 33 2467889999999883 445555666663 33444444
No 29
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.72 E-value=4.8e-17 Score=140.26 Aligned_cols=116 Identities=11% Similarity=0.211 Sum_probs=100.7
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
.++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 568999999999999999999999999999999999999999999999999999999765 466544 57999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+..++ . ..+++..+++|+++|+++.|++++|.++++++|
T Consensus 89 ~~~~~-~-------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 127 (154)
T 2z69_A 89 EAMMF-M-------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT 127 (154)
T ss_dssp GGGGG-S-------SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH
T ss_pred cHhhc-c-------CCCCCceEEEEccceEEEEECHHHHHHHHHHCh
Confidence 99875 1 112268899999999999999999999999994
No 30
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.71 E-value=9.2e-17 Score=139.30 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=102.8
Q ss_pred HHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCC
Q 014323 193 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGD 272 (427)
Q Consensus 193 ~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd 272 (427)
.....++|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. +|+. +..+.+|+
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~ 106 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCC
Confidence 34457789999999999999999999999999999999999999999999999999999997 3432 57899999
Q ss_pred eechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 273 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 273 ~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+||+.+++. ..++.++++|+++|+++.|++++|.+++.++|
T Consensus 107 ~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 107 SFGELALIY---------GTPRAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp EECCHHHHH---------CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred EeeehHhhc---------CCCcceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 999998862 22457899999999999999999999999994
No 31
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.70 E-value=2.3e-16 Score=147.48 Aligned_cols=180 Identities=10% Similarity=0.052 Sum_probs=136.0
Q ss_pred HHHHHHHHhhcc---ceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCC
Q 014323 211 KSILSEMCKCLK---PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPD 286 (427)
Q Consensus 211 ~~~l~~l~~~l~---~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~ 286 (427)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.+++||++||+.+++ ...|.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~-~~~~~ 106 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL-TGNKS 106 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH-SSCCS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh-CCCCC
Confidence 677888888888 9999999999999999999999999999999765 566655 6899999999999876 21111
Q ss_pred CCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhH
Q 014323 287 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSL 366 (427)
Q Consensus 287 ~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~ 366 (427)
++..+++|+++|+++.|++++|.+++.++| .+.......+........++......
T Consensus 107 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~l~~~l~~~l~~~~~~~~~l~~ 162 (243)
T 3la7_A 107 ------DRFYHAVAFTPVELLSAPIEQVEQALKENP------------------ELSMLMLRGLSSRILQTEMMIETLAH 162 (243)
T ss_dssp ------BCCEEEEESSSEEEEEEEHHHHHHHHTTCH------------------HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------cceEEEEEccceEEEEEcHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 235799999999999999999999999993 33333333444445556667777788
Q ss_pred HHHHhhhHHHhhhc-----------CCCCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 367 YAKENILQDQKAEA-----------GGKPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 367 ~~aeery~~~~~~~-----------p~~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
.++++|+..++... +.+..++++..||+.+. ..+++.+++.|- ..+++|.|
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 88999988776542 23567899999999874 344555566662 33444544
No 32
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.70 E-value=1.6e-16 Score=134.67 Aligned_cols=110 Identities=24% Similarity=0.416 Sum_probs=99.2
Q ss_pred HHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 196 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 196 ~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999998754 1 3789999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+.+++. ..++..+++|+++|+++.|++++|.++++++|
T Consensus 81 ~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 118 (138)
T 1vp6_A 81 EMALIS---------GEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118 (138)
T ss_dssp HHHHHH---------CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred ehHhcc---------CCCceeEEEECCCEEEEEECHHHHHHHHHHCH
Confidence 998762 22457899999999999999999999999994
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.69 E-value=2e-16 Score=152.20 Aligned_cols=129 Identities=20% Similarity=0.310 Sum_probs=116.2
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCC
Q 014323 179 LLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGG 258 (427)
Q Consensus 179 ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g 258 (427)
-..++|...|.+...++..++++++++|..+++++++.|+..++.+.|++|++|+++||+++.+|||++|.|+++. +|
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~g 97 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EG 97 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--TT
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--CC
Confidence 4557999999999999999999999999999999999999999999999999999999999999999999999965 34
Q ss_pred eeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 259 RNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 259 ~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
. .+..+.+|++|||.+++ ...++.++++|.++|+++.|++++|.+++..+|
T Consensus 98 ~----~~~~~~~G~~fGe~~ll---------~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 98 V----KLCTMGPGKVFGELAIL---------YNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp E----EEEEECTTCEESCSGGG---------TTTBCCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred E----EEEEeCCCCeeeHhHHh---------cCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 3 25799999999999876 223568899999999999999999999999995
No 34
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.69 E-value=7.7e-16 Score=143.34 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=134.0
Q ss_pred cCCHHHHHHHHh--hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCC
Q 014323 208 MMGKSILSEMCK--CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALD 284 (427)
Q Consensus 208 ~l~~~~l~~l~~--~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~ 284 (427)
++++++++.+.. .++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++ +|++||+.+++.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~~--- 76 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFID--- 76 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCTT---
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhhc---
Confidence 578889998885 5999999999999999999999999999999999764 566655 5678 999999998751
Q ss_pred CCCCCCCCC-cceeEEEc-ceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHh
Q 014323 285 PDPLSNIPH-SNCALISV-TNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL 362 (427)
Q Consensus 285 p~~~~~~~~-s~~tv~Al-~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~ 362 (427)
..++ +..++.|+ ++|+++.|++++|.+++.++| .+.......+....+...++..
T Consensus 77 -----~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p------------------~~~~~~~~~l~~~l~~~~~~~~ 133 (238)
T 2bgc_A 77 -----TETSVGYYNLEVISEQATAYVIKINELKELLSKNL------------------THFFYVFQTLQKQVSYSLAKFN 133 (238)
T ss_dssp -----TCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 25678888 599999999999999999993 3333333444445556677888
Q ss_pred hhhHHHHHhhhHHHhhh--------cC---CCCC-chhhHHHHhHHH-------HHHHHHHHhhCC--CCCCcccc
Q 014323 363 EGSLYAKENILQDQKAE--------AG---GKPS-KFGTAIYATQFF-------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 363 ~~~~~~aeery~~~~~~--------~p---~~~~-~~~~~~~AS~~~-------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
.+...++++|+..++.. .| .+.. .+++.+||+.+. ..+++.+++.|- ..+++|.|
T Consensus 134 ~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I 209 (238)
T 2bgc_A 134 DFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 209 (238)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 88889999999888753 13 2345 789999998552 334555566663 23344554
No 35
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-17 Score=139.03 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=104.4
Q ss_pred ChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeec-CCcEEEecCCCCceEEEEEeeEEEEEEecCCeeee
Q 014323 184 PVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYV-QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTS 262 (427)
Q Consensus 184 p~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~-kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~ 262 (427)
|+..|.+.......++|+++++|..++++.++.++..++.+.|+ +|++|+++|++++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 34444444444556789999999999999999999999999999 999999999999999999999999986 44443
Q ss_pred EEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeE-EEcceEEEEEecHHHHHHHHHHch
Q 014323 263 VFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 263 ~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv-~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
..+.+|++||+.+++ ...++..++ +|+++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---------DKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---------CCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---------CCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 458899999998865 222446678 999999999999999999999884
No 36
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.66 E-value=4.2e-16 Score=159.53 Aligned_cols=138 Identities=15% Similarity=0.218 Sum_probs=117.2
Q ss_pred CChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeee
Q 014323 183 LPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNT 261 (427)
Q Consensus 183 Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~ 261 (427)
.|+..|.+.......++|+++++|..+++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 56777888888888999999999999999999999999999999999999999999999999999999999765 44321
Q ss_pred eEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchh
Q 014323 262 SVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPL 332 (427)
Q Consensus 262 ~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~ 332 (427)
...+..+++|++||+.+ + . ..++.++++|+++|+++.|++++|.+++.++ +.+....++
T Consensus 107 ~~~~~~~~~G~~fGe~~-l-~--------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~--p~~~~~l~~ 165 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-L-D--------NTPRHATIVTRESSELLRIEQEDFKALWEKY--RQYMAGLLA 165 (469)
T ss_dssp CEEEEEECTTCEECGGG-G-G--------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHH--GGGTTTTSC
T ss_pred ceEEEEccCCCCcchhh-h-C--------CCCccceEEEccceeEEEEcHHHHHHHHHhC--HHHHHHHHH
Confidence 12368999999999987 5 2 2245889999999999999999999999999 444444433
No 37
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.66 E-value=7.5e-16 Score=150.58 Aligned_cols=113 Identities=13% Similarity=0.203 Sum_probs=101.8
Q ss_pred HHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 197 LEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 197 ~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
.++|+++|+|..++++++..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 468899999999999999999999999999999999999999999999999999999865 4443 3 68999999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+.+++. ..+++++++|+++|+++.|++++|.+++ ++|
T Consensus 89 e~~l~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p 125 (333)
T 4ava_A 89 EIALLR---------DSPRSATVTTIEPLTGWTGGRGAFATMV-HIP 125 (333)
T ss_dssp HHHHHH---------TCBCSSEEEESSCEEEEEECHHHHHHHH-HST
T ss_pred HHHhcC---------CCCceEEEEEecCEEEEEEcHHHHHHHH-hCh
Confidence 998762 2345889999999999999999999999 895
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.65 E-value=1.3e-15 Score=146.46 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=105.9
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec--CCeeeeEEEEEcCCC
Q 014323 194 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTG 271 (427)
Q Consensus 194 ~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~--~g~e~~~~~~~l~~G 271 (427)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678999999999999999999999999999999999999999999999999999999865 565544 6899999
Q ss_pred CeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 272 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 272 d~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
++|||.+++ ...++.++++|.++|+++.|++++|.+++..+|
T Consensus 231 ~~fGe~~ll---------~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p 272 (299)
T 3shr_A 231 DWFGEKALQ---------GEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLD 272 (299)
T ss_dssp CEECGGGGS---------SSEECSSEEEESSSEEEEEEEHHHHHHHHTTCC
T ss_pred CEeChHHHh---------CCCCcceEEEECCCEEEEEEeHHHHHHHHccHH
Confidence 999999875 223568899999999999999999999999993
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.64 E-value=1.9e-15 Score=152.77 Aligned_cols=124 Identities=12% Similarity=0.154 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEE
Q 014323 188 NWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKY 267 (427)
Q Consensus 188 r~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~ 267 (427)
+.+-......++|+++++|..++++.+..|+..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 344455667889999999999999999999999999999999999999999999999999999999876777655 679
Q ss_pred cCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 268 LSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 268 l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+.+|++||+.+++ ...++.++++|+++|+++.|++++|..++..+|
T Consensus 213 l~~G~~fGe~all---------~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 213 YDNRGSFGELALM---------YNTPKAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp EESCCEECGGGGT---------SCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred ecCCCEEeeHHHh---------cCCCcccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 9999999999886 233568999999999999999999999999994
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.63 E-value=5.7e-15 Score=141.26 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=107.7
Q ss_pred HHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CC-eeeeEEEEEcCCC
Q 014323 194 ELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GG-RNTSVFKKYLSTG 271 (427)
Q Consensus 194 ~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g-~e~~~~~~~l~~G 271 (427)
.+...+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++... +| ++.. +..+++|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCC
Confidence 345677889999999999999999999999999999999999999999999999999998654 33 3333 6899999
Q ss_pred CeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhh
Q 014323 272 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLD 333 (427)
Q Consensus 272 d~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~ 333 (427)
++|||.+++ ...+++++++|.++|+++.|++++|.+++..+ |.+..+.++.
T Consensus 231 ~~fGe~~ll---------~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~--p~~~~~~~~~ 281 (291)
T 2qcs_B 231 DYFGEIALL---------MNRPKAATVVARGPLKCVKLDRPRFERVLGPC--SDILKRNIQQ 281 (291)
T ss_dssp CEECSGGGT---------CCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCH--HHHHTTSHHH
T ss_pred CEecHHHHc---------CCCCcceEEEECCcEEEEEEcHHHHHHHhccH--HHHHHHHHHH
Confidence 999999875 22356889999999999999999999999999 4554444443
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3e-15 Score=139.16 Aligned_cols=114 Identities=14% Similarity=0.265 Sum_probs=102.9
Q ss_pred HHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 195 LCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 195 l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
+...+++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+++ .+..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcc
Confidence 3456788999999999999999999999999999999999999999999999999999986654 26899999999
Q ss_pred chhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 275 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 275 Ge~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
||.+++. ..++.++++|.++|+++.|++++|.+++..+|
T Consensus 197 Ge~~~~~---------~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~ 235 (246)
T 3of1_A 197 GEVALLN---------DLPRQATVTATKRTKVATLGKSGFQRLLGPAV 235 (246)
T ss_dssp CHHHHHH---------TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHH
T ss_pred cHHHHhC---------CCCcccEEEECCCEEEEEEeHHHHHHHhccHH
Confidence 9999862 23458899999999999999999999999995
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.61 E-value=6.2e-15 Score=140.99 Aligned_cols=118 Identities=17% Similarity=0.238 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcC
Q 014323 190 EMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLS 269 (427)
Q Consensus 190 ~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~ 269 (427)
+-......++|+++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|.. +..+.
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~~----~~~l~ 104 (291)
T 2qcs_B 31 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVG 104 (291)
T ss_dssp HHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTEE----EEEEC
T ss_pred HHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCeE----EEEcC
Confidence 33345567899999999999999999999999999999999999999999999999999999998 3432 57999
Q ss_pred CCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 270 TGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 270 ~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+|++||+.+++ ...++.++++|.++|+++.|++++|.+++..+|
T Consensus 105 ~G~~fGe~~l~---------~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 148 (291)
T 2qcs_B 105 EGGSFGELALI---------YGTPRAATVKAKTNVKLWGIDRDSYRRILMGST 148 (291)
T ss_dssp TTCEECGGGGT---------CCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred CCCccchHHHh---------cCCCCceEEEECCCEEEEEEEhHHHHHHHhhhH
Confidence 99999998875 223568899999999999999999999999994
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.9e-15 Score=139.23 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=101.0
Q ss_pred HHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 196 CLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 196 ~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..++|+++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +++. +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 36789999999999999999999999999999999999999999999999999999986 3332 47899999999
Q ss_pred hhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 276 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 276 e~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
+.+++. ..++.++++|.++|+++.|++++|.+++..+|
T Consensus 79 e~~l~~---------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 79 ELALMY---------NSPRAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp HHHHHH---------TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred hhHHhc---------CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 998862 22458899999999999999999999999995
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=148.88 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=105.3
Q ss_pred HHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCC
Q 014323 193 SELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTG 271 (427)
Q Consensus 193 ~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~G 271 (427)
+.++..+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++. ..+..+++|
T Consensus 243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~-~~v~~l~~G 321 (381)
T 4din_B 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEY-VEVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCC-CEEEEECTT
T ss_pred HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCce-EEEEEeCCC
Confidence 4456678999999999999999999999999999999999999999999999999999999864 33322 226899999
Q ss_pred CeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 272 DFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 272 d~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
++|||.+++ ...++.++|+|+++|+++.|++++|.+++..+|
T Consensus 322 d~fGe~all---------~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~ 363 (381)
T 4din_B 322 DYFGEIALL---------LNRPRAATVVARGPLKCVKLDRPRFERVLGPCS 363 (381)
T ss_dssp CEECTTGGG---------SCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHH
T ss_pred CEechHHHh---------CCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhH
Confidence 999999986 223568999999999999999999999999993
No 45
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.57 E-value=8.9e-15 Score=131.79 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=116.0
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 302 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~ 302 (427)
+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+ +++ ...++.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---------~~~~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---------EGKAYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---------TCSBCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---------CCCCceeEEEECC
Confidence 679999999999999999999999999999765 566654 689999999999 875 2224588999999
Q ss_pred eEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHhhhc--
Q 014323 303 NVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEA-- 380 (427)
Q Consensus 303 ~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery~~~~~~~-- 380 (427)
+|+++.|++++|. | .+.......+....+...++...+...++++|+..++...
T Consensus 70 ~~~v~~i~~~~~~------p------------------~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~ 125 (195)
T 3b02_A 70 EAVVQGLEPRAMD------H------------------EALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLAD 125 (195)
T ss_dssp SEEEEEECGGGCC------H------------------HHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred cEEEEEEcHHHcC------H------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999987 3 1111112233334555677788888899999998887653
Q ss_pred --CC------CCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 381 --GG------KPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 381 --p~------~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
+. +...+++.+||+.+. ..+++.+++.|- ..+++|.|
T Consensus 126 ~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 178 (195)
T 3b02_A 126 TPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYL 178 (195)
T ss_dssp STTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred HcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 22 456788999998763 334555566663 33444544
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=144.85 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCC
Q 014323 191 MKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLST 270 (427)
Q Consensus 191 i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~ 270 (427)
-......++|+++++|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+++
T Consensus 123 ~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~ 196 (381)
T 4din_B 123 KTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISE 196 (381)
T ss_dssp HHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEES
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCC
Confidence 3344567899999999999999999999999999999999999999999999999999999997 3432 578999
Q ss_pred CCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 271 GDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 271 Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
|++||+.+++ ...++.++++|+++|+++.|++++|.+++..+|
T Consensus 197 G~~fGe~all---------~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~ 239 (381)
T 4din_B 197 GGSFGELALI---------YGTPRAATVKAKTDLKLWGIDRDSYRRILMGST 239 (381)
T ss_dssp SCCBCGGGGT---------SCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHH
T ss_pred CCEEEchHHh---------cCCCcceEEEECCCEEEEEEchHHHHHhhhhhh
Confidence 9999999876 223568899999999999999999999999994
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.54 E-value=2e-14 Score=145.28 Aligned_cols=114 Identities=12% Similarity=0.225 Sum_probs=99.9
Q ss_pred HHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecC-------CeeeeEEEEEcCC
Q 014323 198 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-------GRNTSVFKKYLST 270 (427)
Q Consensus 198 ~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~-------g~e~~~~~~~l~~ 270 (427)
.+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.. +..+++
T Consensus 267 ~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l~~ 344 (416)
T 3tnp_B 267 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARCFR 344 (416)
T ss_dssp SSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEECT
T ss_pred HHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEeCC
Confidence 467889999999999999999999999999999999999999999999999999997653 55544 689999
Q ss_pred CCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHch
Q 014323 271 GDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 271 Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P 322 (427)
|++|||.+++ ...++.++|+|+++|+++.|++++|.+++..+|
T Consensus 345 G~~fGE~all---------~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p 387 (416)
T 3tnp_B 345 GQYFGELALV---------TNKPRAASAHAIGTVKCLAMDVQAFERLLGPCM 387 (416)
T ss_dssp TCEESGGGGT---------CCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHH
T ss_pred CCEecHHHHh---------CCCCceeEEEEcCCeEEEEEEHHHHHHHhcchH
Confidence 9999999986 223568999999999999999999999999994
No 48
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.53 E-value=5.2e-15 Score=126.17 Aligned_cols=93 Identities=10% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcC
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEML 152 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~~~~~~~~~l~~~m~~~~l 152 (427)
.|..|+||++.|+|||||||++|.|..+++++++++++|++++|++++.+++.+........+.+...+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 58999999999999999999999999999999999999999999999999999876655443333322222333344556
Q ss_pred CHHHHHHHHHHHH
Q 014323 153 SQSLQQRVRNHQQ 165 (427)
Q Consensus 153 p~~L~~rv~~y~~ 165 (427)
+++....++++.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.52 E-value=8.5e-14 Score=142.34 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=102.1
Q ss_pred HHHHHHHhhcCcccccCCHHHHHHHHhhccc-eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCC
Q 014323 193 SELCLEVLKKVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTG 271 (427)
Q Consensus 193 ~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~G 271 (427)
.....++++++|+|..++++.+..++..+.. +.|++|++|+++||+++.+|||.+|.|+++..+++ .+..+.+|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~-----~~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-----VVCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE-----EEEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe-----eEEEecCC
Confidence 3445688999999999999999999999985 48999999999999999999999999999974332 26899999
Q ss_pred CeechhhhhccCCCCCCCCCCCcceeEEEcc-eEEEEEecHHHHHHHHHHch
Q 014323 272 DFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 272 d~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~-~~~ll~i~~~df~~ll~~~P 322 (427)
++||+.+++ ...++.++++|++ +|+++.|++++|.+++..+|
T Consensus 407 ~~fGe~~ll---------~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p 449 (469)
T 1o7f_A 407 DDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 449 (469)
T ss_dssp CEECGGGGT---------CCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTT
T ss_pred CEEEEehhh---------cCCCceEEEEEecCCEEEEEEcHHHHHHHHHHCh
Confidence 999999876 2335689999999 79999999999999999995
No 50
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.51 E-value=3.1e-14 Score=128.87 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=116.6
Q ss_pred HHhhccceeecCCcEEEecCCCC--ceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCC
Q 014323 217 MCKCLKPVLYVQECCIVKEGDPI--CEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPH 293 (427)
Q Consensus 217 l~~~l~~~~~~kge~I~~eGd~~--~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~ 293 (427)
+...++.+.|++|++|+++||++ +.+|||.+|.|+++..+ +|++.+ +.+++||++||+ +++. . .+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~-~--------~~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF-G--------QE 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH-T--------CC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC-C--------CC
Confidence 34678899999999999999999 99999999999998765 666655 689999999999 6641 1 24
Q ss_pred cceeEEEcceEEEEEecHHHHHHHHHHchhhhhhhhchhhHhhhcccchhhhHHHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 014323 294 SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 373 (427)
Q Consensus 294 s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~aeery 373 (427)
+..+++|+++|+++.| +++|. | .-+..+. ..+...+....++.......++++|+
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p-----------------~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~Rl 123 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------P-----------------ELLKDLA-QHLSQGLAEAYRRIERLATQRLKNRM 123 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------H-----------------HHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------H-----------------HHHHHHH-HHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5789999999999999 88875 2 1111111 22223445567778888889999999
Q ss_pred HHHhhhcC----------CCCCchhhHHHHhHHH------HHHHHHHHhhCC--CCCCcccc
Q 014323 374 QDQKAEAG----------GKPSKFGTAIYATQFF------TYVRRSVKRNGG--LPGGRVNI 417 (427)
Q Consensus 374 ~~~~~~~p----------~~~~~~~~~~~AS~~~------~~~~~~~~~~~~--~~~~~~~~ 417 (427)
..++.... .+...+++.+||+.+. ..+++.+++.|- ..+++|.|
T Consensus 124 ~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 124 AAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp HHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 88876642 3456788999998774 344555566663 22344544
No 51
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.49 E-value=7.5e-14 Score=120.72 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHH------HHHh----hhhhhHHHHHHHHH
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTI------YLQS----GTIKLEEIKSKARE 142 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~------~l~~----~~~~~~~~~~~~~~ 142 (427)
.|..|+||++.|+|||||||++|.+..+++|+++.+++|+.+++++++++.. +... .+....+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999886 3322 24445666778899
Q ss_pred HHHHHhhhcCCHHHHHH
Q 014323 143 IEQWRTFEMLSQSLQQR 159 (427)
Q Consensus 143 l~~~m~~~~lp~~L~~r 159 (427)
++++++.++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.45 E-value=5.3e-13 Score=148.97 Aligned_cols=134 Identities=18% Similarity=0.268 Sum_probs=109.4
Q ss_pred hhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec--
Q 014323 179 LLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-- 256 (427)
Q Consensus 179 ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-- 256 (427)
.|+.-|. -|.+--..+....|+.+++|..+++..+..||..+....|++|++||++||+++.+|+|++|.|.++..+
T Consensus 24 ~L~K~p~-~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRPL-ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCSS-SCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCcc-cCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 4445443 3433334455678999999999999999999999999999999999999999999999999999998743
Q ss_pred -CCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHHHHHHHHHchhhh
Q 014323 257 -GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHR 325 (427)
Q Consensus 257 -~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~df~~ll~~~P~~~ 325 (427)
++.+ ..+..+++|++||| +++ ...+++++++|.++|++++|++++|+.++.++|+..
T Consensus 103 ~~~~~--~~v~~l~~G~sFGE-all---------~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 103 SHQDA--VTICTLGIGTAFGE-SIL---------DNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp CTTSC--EEEEEEETTCEECG-GGG---------GTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCc--eeEEEecCCcchhh-hhc---------cCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 2222 23679999999999 554 122468999999999999999999999999997533
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.44 E-value=3.5e-13 Score=144.15 Aligned_cols=131 Identities=12% Similarity=0.158 Sum_probs=109.8
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhcc-ceeecCCcEEEecCCCCceEEEEEeeEEEEEEe
Q 014323 177 ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLK-PVLYVQECCIVKEGDPICEMFFITQGTLLTTTT 255 (427)
Q Consensus 177 ~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~-~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~ 255 (427)
..++...|. .|.+.......++++++++|..++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 445544444 354444555678999999999999999999999998 789999999999999999999999999999975
Q ss_pred cCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc-eEEEEEecHHHHHHHHHHch
Q 014323 256 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 256 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~-~~~ll~i~~~df~~ll~~~P 322 (427)
+ + .+ +.++.+|++||+.+++ .. .++.++++|++ +|+++.|++++|.++++++|
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al~-~~--------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLALV-ND--------APRAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHHH-HT--------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred C--C-EE--EEEeCCCCEeehHHHh-CC--------CCceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 3 2 22 6899999999999876 22 24588999999 59999999999999999996
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.37 E-value=4.7e-12 Score=141.28 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=107.0
Q ss_pred hhhhcCCChhhHHHHHHHHHHHHhhcCcccccCCHHHHHHHHhhcccee-ecCCcEEEecCCCCceEEEEEeeEEEEEEe
Q 014323 177 ENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTT 255 (427)
Q Consensus 177 ~~ll~~Lp~~Lr~~i~~~l~~~~L~~v~~F~~l~~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~~~~~ 255 (427)
..++...|..-..+. .....+.+.++|.|..++...++.++..+.... +++|++|+++||.++.+|||.+|.|.++..
T Consensus 317 r~~l~k~~~~rt~ed-~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~ 395 (999)
T 4f7z_A 317 RMILRKPPGQRTVDD-LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 395 (999)
T ss_dssp HHHHTSCGGGCCHHH-HHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hhhhcCCcccccHHH-HHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEc
Confidence 445555554433222 344578899999999999999999999998655 577999999999999999999999999875
Q ss_pred cCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcce-EEEEEecHHHHHHHHHHch
Q 014323 256 NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQYW 322 (427)
Q Consensus 256 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~-~~ll~i~~~df~~ll~~~P 322 (427)
.++. +..+++||+|||.+++ +..|+.+||+|.++ |++++|+++||.+++.+..
T Consensus 396 ~~~~-----v~~L~~Gd~FGElALL---------~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 396 GKGV-----VCTLHEGDDFGKLALV---------NDAPRAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp TTEE-----EEEEETTCEECGGGGT---------CSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCcc-----eEEecCCCcccchhhc---------cCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 4432 5789999999999986 34467899999985 9999999999999998753
No 55
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.35 E-value=2.2e-12 Score=110.19 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhh-HHHHHHHHHHHHHHh
Q 014323 70 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKL-EEIKSKAREIEQWRT 148 (427)
Q Consensus 70 ~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~-~~~~~~~~~l~~~m~ 148 (427)
....|..|+||++.|+|||||||++|.+..+++++++++++|+++++++++.+...+.....+. .++..+.+.....+.
T Consensus 37 ~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (139)
T 3eff_K 37 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAY 116 (139)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999998886654433 333333333333333
Q ss_pred hhcCCHHHHHHHHH
Q 014323 149 FEMLSQSLQQRVRN 162 (427)
Q Consensus 149 ~~~lp~~L~~rv~~ 162 (427)
.+++ +++..|+.+
T Consensus 117 ~~~~-~~l~~~l~~ 129 (139)
T 3eff_K 117 TRTT-RALHERFDR 129 (139)
T ss_dssp HHHH-HHHHHHHHH
T ss_pred HHHH-HHHHHHHHH
Confidence 3333 455555544
No 56
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.27 E-value=3e-12 Score=111.16 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhH
Q 014323 69 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLE 134 (427)
Q Consensus 69 ~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~ 134 (427)
+.+..|..|+||++.|+|||||||++|.+..+++++++.+++|++++++.+|.+.+.+.+...+..
T Consensus 80 ~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 80 AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999999999999999999999999999999999999987765443
No 57
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.25 E-value=5.6e-12 Score=105.17 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 014323 69 AFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 132 (427)
Q Consensus 69 ~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~ 132 (427)
+....|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|++.+.+.+...+
T Consensus 57 ~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 57 AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445799999999999999999999999999999999999999999999999999999876543
No 58
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.17 E-value=3.3e-11 Score=99.21 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 131 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~ 131 (427)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+.+.++....
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999998855443
No 59
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.16 E-value=3.7e-12 Score=112.16 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhH
Q 014323 70 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLE 134 (427)
Q Consensus 70 ~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~~ 134 (427)
....|..|+||++.|+|||||||++|.+..+++++++++++|++++++++|.+...+.....+..
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999886655443
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.16 E-value=5.5e-11 Score=91.86 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 126 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l 126 (427)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999998875
No 61
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.14 E-value=6.1e-12 Score=101.75 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 132 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~ 132 (427)
...|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+.+...+
T Consensus 38 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 38 LISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred cccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999988765443
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.14 E-value=6.9e-11 Score=94.34 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 129 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~ 129 (427)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.+++++++.++..++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 489999999999999999999999999999999999999999999999999887643
No 63
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.04 E-value=1.5e-10 Score=106.60 Aligned_cols=59 Identities=14% Similarity=0.257 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014323 70 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 128 (427)
Q Consensus 70 ~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~ 128 (427)
....|..|+||++.||||+||||++|.|..++++++++|++|++++|+.+|++++.+++
T Consensus 162 ~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 162 SIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999998875
No 64
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.91 E-value=2.6e-09 Score=102.37 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 129 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~ 129 (427)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.++..+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999988654
No 65
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.77 E-value=6.7e-09 Score=100.47 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 130 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~ 130 (427)
.|..|+||++.|||||||||+.|.+...++++++.+++|++++|+++|.+...+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999998886643
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.75 E-value=7e-09 Score=100.71 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 014323 72 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 130 (427)
Q Consensus 72 ~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~ 130 (427)
..|..||||++.|+|||||||++|.+...++++++.+++|++++|+++|.+...+....
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999998886553
No 67
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.70 E-value=1.1e-08 Score=98.16 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 128 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~ 128 (427)
...|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+...+..
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999999999999998887754
No 68
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.68 E-value=9.4e-09 Score=106.12 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=58.3
Q ss_pred cchHHHHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 014323 68 KAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTI 131 (427)
Q Consensus 68 ~~~~~~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~ 131 (427)
++.+..|..|+||++.||||+||||+.|.+..+++|++++|++|++++++.+|.+.+.++....
T Consensus 370 ~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 370 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455689999999999999999999999999999999999999999999999999987776654
No 69
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=97.95 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhH------HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGEN------LLASFIIIASLLLLLLVLGNLTIYLQSGTIKL 133 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~------~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~~ 133 (427)
.|+.|+||++.|+|||||||+.|.+...+ +|+++++++|+.+++++++.+++++.....+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998887 59999999999999999999999988776554
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.62 E-value=4.9e-08 Score=92.14 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 128 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~ 128 (427)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999876544
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.54 E-value=5e-08 Score=92.09 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChh-------hHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEG-------ENLLASFIIIASLLLLLLVLGNLTIYLQSG 129 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~-------E~~f~i~~~i~G~~~fa~lig~i~~~l~~~ 129 (427)
-|+.|+||++.|+|||||||+.|.+.. -++|+++++++|+.+++++++.+.++++..
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999885 399999999999999999999999877654
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.40 E-value=3.3e-07 Score=95.77 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHh-HHHHH
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN-LTIYL 126 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~-i~~~l 126 (427)
.|+.||||++.|+||+||||++|.+..+++|+++++++|++++++.++. +..++
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998 44444
No 73
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.39 E-value=1.5e-08 Score=98.92 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSG 129 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~ 129 (427)
.|..|+||++.|+||+||||+.|.+..+++|+++++++|+++++++++.+...+...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999998877654
No 74
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.15 E-value=2.4e-06 Score=82.83 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhcccccCCCcccC--ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 014323 72 KKFIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIK 132 (427)
Q Consensus 72 ~~Y~~slyw~~~tlttvGygdi~~~--~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~~ 132 (427)
..+..+|||++.|+|||||||+.|+ +..-++++++.+++|+++.|+.+|.+..-+.....+
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 4577899999999999999999997 678899999999999999999999988877654433
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.02 E-value=5.4e-06 Score=80.41 Aligned_cols=60 Identities=12% Similarity=0.213 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhcccccCCCcccC--ChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 014323 71 KKKFIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNLTIYLQSGT 130 (427)
Q Consensus 71 ~~~Y~~slyw~~~tlttvGygdi~~~--~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~~~ 130 (427)
...+..+|||++.|+||+||||+.|. +..-++++++.+++|+++.|+.+|.+..-+....
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35678999999999999999999764 7889999999999999999999998887765543
No 76
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.27 E-value=0.00011 Score=69.61 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=51.6
Q ss_pred CcchHHHHHHHHHHHhhhcccccCC-Ccc-cCChhh----HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 014323 67 EKAFKKKFIYCFRWGLQTVSCAGQN-LQT-STHEGE----NLLASFIIIASLLLLLLVLGNLTIYLQSGTI 131 (427)
Q Consensus 67 ~~~~~~~Y~~slyw~~~tlttvGyg-di~-~~~~~E----~~f~i~~~i~G~~~fa~lig~i~~~l~~~~~ 131 (427)
.++.+.-+..|+||++.++||+||| |+. |.+..- +.|.+++++.|+++++..+|.+.+-+.....
T Consensus 174 ~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 174 FPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp CHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999 985 665543 8899999999999999999999988765443
No 77
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=81.44 E-value=7.4 Score=30.52 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=46.0
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEE
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 300 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~A 300 (427)
+....+++|..+-.--.+..++++|++|.+++.. +++ ...+.+||++---. .....+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ip~--------------~~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYLGA--------------GAAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEECT--------------TCCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECC--------------CCcEEEEe
Confidence 3445677888776555566799999999999876 333 25789999764322 12457788
Q ss_pred cceEEEEE
Q 014323 301 VTNVEAFA 308 (427)
Q Consensus 301 l~~~~ll~ 308 (427)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877554
No 78
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=79.05 E-value=6.5 Score=35.11 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=52.5
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEE
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 299 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~ 299 (427)
.+....+.+|+.+=..--+.+.+++|++|.+++... |+ ...+.+||++=--+ .....+.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~p~--------------~~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEITA--------------NHNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEECS--------------SCCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEECC--------------CCCEEEE
Confidence 345667899999987777899999999999998873 33 25788998763221 1256889
Q ss_pred EcceEEEEEe
Q 014323 300 SVTNVEAFAI 309 (427)
Q Consensus 300 Al~~~~ll~i 309 (427)
|.+++.++.+
T Consensus 97 a~~~~~~l~i 106 (227)
T 3rns_A 97 ARDNLKLIEI 106 (227)
T ss_dssp ESSSEEEEEE
T ss_pred ECCCcEEEEE
Confidence 9999999877
No 79
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=78.38 E-value=8.2 Score=29.90 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=40.6
Q ss_pred eecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceE
Q 014323 225 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNV 304 (427)
Q Consensus 225 ~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~ 304 (427)
.+.+|..+-....+..++++|++|.+.+.. +++ ...+.+||++=--+ + ....+.+.+++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~~-----------~---~~H~~~~~~~~ 102 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVPA-----------H---KIHAIAGKGRF 102 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEECT-----------T---CCBEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEECC-----------C---CcEEEEeCCCc
Confidence 355665544334456789999999999776 333 25799999764222 1 13456666777
Q ss_pred EEEEe
Q 014323 305 EAFAI 309 (427)
Q Consensus 305 ~ll~i 309 (427)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 80
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=76.95 E-value=3.3 Score=44.30 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhcccccCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014323 73 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQS 128 (427)
Q Consensus 73 ~Y~~slyw~~~tlttvGygdi~~~~~~E~~f~i~~~i~G~~~fa~lig~i~~~l~~ 128 (427)
....++||++.+++..| ++..|.+...+++.++++++++++.+...++++++++.
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35689999999999888 67899999999999999999999999999999999975
No 81
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=74.11 E-value=19 Score=27.71 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=44.2
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEc
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 301 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al 301 (427)
....+++|..+-.---...++++|++|.+.+.. +++ ...+.+||++=--. .....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~~ 95 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVPP--------------HVDHGAVCP 95 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEECT--------------TCCEEEEES
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEECc--------------CCceeeEeC
Confidence 445677887653333346789999999998876 333 25799999853221 114567777
Q ss_pred ceEEEEEe
Q 014323 302 TNVEAFAI 309 (427)
Q Consensus 302 ~~~~ll~i 309 (427)
+++.++.+
T Consensus 96 ~~~~~l~v 103 (116)
T 2pfw_A 96 TGGILIDT 103 (116)
T ss_dssp SCEEEEEE
T ss_pred CCcEEEEE
Confidence 78877766
No 82
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=73.99 E-value=18 Score=27.80 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=43.5
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEc
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 301 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al 301 (427)
....+.+|..+-.---...++++|++|.+.+.. +++ ...+.+||++---. .....+.+.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVMPA--------------GIPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEECT--------------TSCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEECC--------------CCCEEEEEC
Confidence 344567777664333346789999999998875 333 25789999764221 114467777
Q ss_pred ceEEEEEe
Q 014323 302 TNVEAFAI 309 (427)
Q Consensus 302 ~~~~ll~i 309 (427)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 77777654
No 83
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=73.71 E-value=3 Score=24.20 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 014323 343 RTSKACVIQAAWCRYKKRK 361 (427)
Q Consensus 343 ~~~~~~~~q~~~~~~~~r~ 361 (427)
+.+++.+||.+|+++..|.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5688999999999997664
No 84
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=73.10 E-value=3.3 Score=24.87 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 014323 343 RTSKACVIQAAWCRYKKRKL 362 (427)
Q Consensus 343 ~~~~~~~~q~~~~~~~~r~~ 362 (427)
+.+++.+||.+|+++.-|..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999976643
No 85
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=71.99 E-value=11 Score=29.99 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=32.7
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+.+|..+-.. ...+++++|++|.+++.. +|+ ...+++||++-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3456777655433 378899999999999877 444 25799999874
No 86
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=67.05 E-value=4 Score=36.44 Aligned_cols=60 Identities=18% Similarity=0.006 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHHHhhhcccccCCCccc----CChh-hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014323 68 KAFKKKFIYCFRWGLQTVSCAGQNLQTS----THEG-ENLLASFIIIASLLLLLLVLGNLTIYLQ 127 (427)
Q Consensus 68 ~~~~~~Y~~slyw~~~tlttvGygdi~~----~~~~-E~~f~i~~~i~G~~~fa~lig~i~~~l~ 127 (427)
++.++....|++|.+.++|+.|++|+-. .+.. =..|..++++.+.++....++-+.+-++
T Consensus 160 ~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 160 PSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp CTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999998611 1122 2344445555556667777776665544
No 87
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=65.67 E-value=25 Score=27.48 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=33.7
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
+....+.+|..+-.---...++++|++|.+.+.. +++ ...+.+||++-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3445677777664444456789999999999876 333 25789999763
No 88
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=61.60 E-value=11 Score=32.22 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=38.8
Q ss_pred CCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc-eEEEEEecHHH
Q 014323 238 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDD 313 (427)
Q Consensus 238 ~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~-~~~ll~i~~~d 313 (427)
+.++++++++|.+.+-..++|+.. ...+++||+|=--. +. ..+-++-+ ++..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~lP~-----------gv---pH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFLLPP-----------HV---RHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEEECT-----------TC---CEEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEEeCC-----------CC---CcCccccCCCCEEEEEEeCC
Confidence 467999999999999887766322 35899999884322 11 23444555 67777765543
No 89
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=60.03 E-value=29 Score=30.68 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=47.2
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEE
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 300 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~A 300 (427)
+....+++|+.+-..--+.+.+++|++|.+++.. +|+ ...+.+||++=--+ .....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip~--------------~~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLPA--------------NIPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEECT--------------TSCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEECC--------------CCcEEEEe
Confidence 3456788898876555567789999999999876 333 25789999764322 12456778
Q ss_pred -cceEEEEEe
Q 014323 301 -VTNVEAFAI 309 (427)
Q Consensus 301 -l~~~~ll~i 309 (427)
.+++.++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 90
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=57.85 E-value=18 Score=29.81 Aligned_cols=65 Identities=9% Similarity=0.133 Sum_probs=41.7
Q ss_pred EecCCCCceEEEEEeeEEEEEEecC--CeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEec
Q 014323 233 VKEGDPICEMFFITQGTLLTTTTNG--GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 310 (427)
Q Consensus 233 ~~eGd~~~~lyfI~~G~v~~~~~~~--g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~ 310 (427)
++.-+..|++|+|++|.+.+...++ +.... ....+.+|+++---.- -..+-.|-++|.++.|.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvVPkG--------------veH~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNVPAE--------------CWFYSITQKDTKMMYVQ 108 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEECTT--------------CEEEEEECTTCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEeCCC--------------ccCcccCCCceEEEEEE
Confidence 3444567899999999999887642 11001 1357899998754221 13456677888888776
Q ss_pred HH
Q 014323 311 TD 312 (427)
Q Consensus 311 ~~ 312 (427)
..
T Consensus 109 p~ 110 (140)
T 3d0j_A 109 DS 110 (140)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 91
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=57.21 E-value=50 Score=28.24 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=52.3
Q ss_pred HHHHHHHhhccc----eeecCCcEEE-ecCC----------CCceEEEEEeeEEEEEEecCC---eeeeEEEEEcCCCCe
Q 014323 212 SILSEMCKCLKP----VLYVQECCIV-KEGD----------PICEMFFITQGTLLTTTTNGG---RNTSVFKKYLSTGDF 273 (427)
Q Consensus 212 ~~l~~l~~~l~~----~~~~kge~I~-~eGd----------~~~~lyfI~~G~v~~~~~~~g---~e~~~~~~~l~~Gd~ 273 (427)
+.++.....+++ +....+++++ .-|. +.++++++++|.+.+-..++| ++ +....+++||+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdm 89 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDS 89 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCE
Confidence 345566667777 5444466553 2333 345899999999999887755 11 11358999998
Q ss_pred echhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHH
Q 014323 274 WGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDD 313 (427)
Q Consensus 274 fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~d 313 (427)
|=--. +. ..+-++-+++..+.+.+..
T Consensus 90 fllP~-----------gv---pHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 90 YLLPG-----------NV---PHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp EEECT-----------TC---CEEEEECTTCEEEEEEECC
T ss_pred EEcCC-----------CC---CcCCcccCCcEEEEEEecC
Confidence 84321 11 2344445777777776543
No 92
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=56.23 E-value=14 Score=31.58 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=36.4
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
+....+.||.....--...+++++|++|.+++...+.+... ...+++||++--
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEEE
Confidence 44556788877654433468999999999998765433221 358999998753
No 93
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=55.34 E-value=66 Score=24.44 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=33.7
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
+-...+.+|..-.. -...++++|++|.+.+... +|. ...+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 33566778876554 4468999999999998763 233 25799999874
No 94
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=55.16 E-value=24 Score=26.58 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=32.5
Q ss_pred cceeecCCcEEEec--CCC-CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKE--GDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~e--Gd~-~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
....+.+|..+-.. --. ..++++|++|.+.+.. +++ ...+.+||++-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34467788766443 333 6789999999998776 333 25789998764
No 95
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=54.73 E-value=28 Score=29.79 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=30.7
Q ss_pred eecCCcEEE---ecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 225 LYVQECCIV---KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 225 ~~~kge~I~---~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.++||...- .--....++++|++|.+.+...+++... ...+.+||++-
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 456665432 1223346899999999998874422111 35899999874
No 96
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=54.30 E-value=30 Score=25.43 Aligned_cols=47 Identities=6% Similarity=0.010 Sum_probs=31.4
Q ss_pred cceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
....+.+|..+-.---. ..++++|++|.+.+... ++ ...+.+||++=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34456777766433323 35799999999988763 33 25789999763
No 97
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=54.26 E-value=13 Score=29.79 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=31.7
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
....+|..-.+..+ .+++++|++|.+.+... +|. ...+++||.+--
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEEE
Confidence 34566766654332 38999999999998763 343 257999998753
No 98
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=53.26 E-value=18 Score=28.25 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=31.9
Q ss_pred ccceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 221 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
+....+++|..+-..--. ..++++|++|.+.+... +++ ...+.+||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 334567777766443334 36889999999987652 333 25789999763
No 99
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=51.77 E-value=31 Score=25.51 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=34.0
Q ss_pred CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEec
Q 014323 239 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 310 (427)
Q Consensus 239 ~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~ 310 (427)
..++++|++|.+.+... ++ ...+.+||++---. .....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYVIPK--------------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEEECT--------------TCCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEEECC--------------CCeEeeEcCCCCEEEEEE
Confidence 37899999999987653 22 24788998763221 113456666788888775
No 100
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=51.46 E-value=12 Score=28.50 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=40.4
Q ss_pred ecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEE
Q 014323 226 YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVE 305 (427)
Q Consensus 226 ~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ 305 (427)
..+|+...+.-+...++++|++|.+.+...+ ++ ...+.+||++---. + ....+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-----------~---~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVPK-----------S---VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEECT-----------T---CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEECC-----------C---CcEeeEeCCCeE
Confidence 3455533333333379999999999987643 13 25799999763221 1 133455557788
Q ss_pred EEEecHHH
Q 014323 306 AFAINTDD 313 (427)
Q Consensus 306 ll~i~~~d 313 (427)
++.++...
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 88776544
No 101
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=50.84 E-value=59 Score=24.21 Aligned_cols=67 Identities=7% Similarity=0.039 Sum_probs=40.1
Q ss_pred ceeecCCcEEEecCCC-CceE-EEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEE
Q 014323 223 PVLYVQECCIVKEGDP-ICEM-FFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 300 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~-~~~l-yfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~A 300 (427)
...+.+|..+-..--. ..++ ++|++|.+.+...+ |+ ...+.+||++---. .....+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~--------------~~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLVAPI--------------STPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEEEET--------------TSCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEEeCC--------------CCcEEEEE
Confidence 3456777766433222 2466 89999999877632 23 25789998764322 11446677
Q ss_pred cceEEEEEe
Q 014323 301 VTNVEAFAI 309 (427)
Q Consensus 301 l~~~~ll~i 309 (427)
.+++.++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777665543
No 102
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=49.06 E-value=53 Score=26.42 Aligned_cols=45 Identities=13% Similarity=0.038 Sum_probs=31.1
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
...+.||..-... ..+++++|++|.+.+.. +|+ ...+++||.+--
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEEE
Confidence 3457777432332 36799999999999876 344 247999998753
No 103
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=48.38 E-value=48 Score=27.58 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 238 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 238 ~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46789999999999885 444 35799999764
No 104
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=46.53 E-value=25 Score=27.97 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=31.4
Q ss_pred eecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 225 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 225 ~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
...+|..-... +..++++.|++|.+.+...+ |. ...+++||.|--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-G~-----~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-AD-----PVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEETT-CC-----CEEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeCC-Ce-----EEEECCCCEEEE
Confidence 45666655554 33458999999999987644 43 257999998754
No 105
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=44.46 E-value=46 Score=30.71 Aligned_cols=60 Identities=12% Similarity=0.278 Sum_probs=41.7
Q ss_pred CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcceEEEEEecHHH
Q 014323 237 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDD 313 (427)
Q Consensus 237 d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~~~~ll~i~~~d 313 (427)
+..+++|++++|.+.+-..++|+-. ...+++|++|=- |+ +. ..+=++-++|..+.|.+..
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfll--------P~---gv---~HsP~r~~et~gLviE~~R 108 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFLL--------PA---RV---PHSPQRFANTVGLVVERRR 108 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEEE--------CT---TC---CEEEEECTTCEEEEEEECC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEEe--------CC---CC---CcCCcccCCeEEEEEeecC
Confidence 3578999999999999887766421 357999998742 22 11 3345567788888887544
No 106
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.57 E-value=33 Score=28.78 Aligned_cols=46 Identities=11% Similarity=-0.041 Sum_probs=30.7
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+.+|..+-..--...++++|++|.+.+.. +++ ...+.+||++-
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 34556665543223346789999999998775 333 25789999764
No 107
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=43.30 E-value=14 Score=27.80 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=29.8
Q ss_pred ceeecCCcEE-EecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I-~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...++||... .+.-+..+++++|++|.+++...+ |.+ ...+.+||.+-
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE-GSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT-EEE----EEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC-CCE----EEEEcCCCEEE
Confidence 3456666654 222222235999999999987633 311 35799999874
No 108
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=42.19 E-value=29 Score=29.28 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=30.2
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..+.+|..+-.---...++++|++|.+++.. +++ ...+.+||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456666543333345689999999999765 333 35789999764
No 109
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=42.10 E-value=21 Score=30.50 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=30.3
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
....++||...-.--....++++|++|.+++...+ |+ ...+++||.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 34456666533222233457889999999987642 33 2579999998
No 110
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=41.52 E-value=30 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=29.9
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..+.+|..+-..--...++++|++|.+++.. +++ ...+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456665543333345689999999999875 333 35788998763
No 111
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=41.52 E-value=41 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=24.8
Q ss_pred CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 237 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 237 d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.+.+++|+|++|.++....++ + ...+++||.+=
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp CSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred CCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 457899999999998876433 2 25789998764
No 112
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=40.60 E-value=48 Score=31.97 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=55.3
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 302 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~ 302 (427)
...+++|+..-.--..+..+|.|.+|.-.+.. +++ ....++||.|-.-.. ......+.+
T Consensus 283 ~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~-----~~~w~~gD~fvvP~w--------------~~h~~~n~~ 341 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGE-----TTKLEKGDMFVVPSW--------------VPWSLQAET 341 (368)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEESS
T ss_pred eEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEEEEeCC
Confidence 34456665554434556789999999988766 343 257899999865543 145778889
Q ss_pred eEEEEEecHHHHHHHHHHc
Q 014323 303 NVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 303 ~~~ll~i~~~df~~ll~~~ 321 (427)
++.++.++-.-+++-+.-+
T Consensus 342 ~a~Lf~~~D~Pl~~~LGl~ 360 (368)
T 3nw4_A 342 QFDLFRFSDAPIMEALSFM 360 (368)
T ss_dssp SEEEEEEESHHHHHHTTCC
T ss_pred CEEEEEEeCHHHHHHhCCc
Confidence 9999999988887766554
No 113
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=39.52 E-value=30 Score=26.78 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 237 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 237 d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+++++|++|.+++...++.. ...+++||++-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 35678999999999987743220 03789999764
No 114
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=39.41 E-value=53 Score=28.36 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=34.7
Q ss_pred ccceeecCCcEEEec-CCCCceEEEEEeeEEEEEEecCC---eeeeEEEEEcCCCCeech
Q 014323 221 LKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNGG---RNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 221 l~~~~~~kge~I~~e-Gd~~~~lyfI~~G~v~~~~~~~g---~e~~~~~~~l~~Gd~fGe 276 (427)
+....+.+|...-.- -....++++|++|.+++...+++ .+.. ...+.+||++--
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEEE
Confidence 334567777755322 23357999999999998765432 2211 257999998743
No 115
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=39.09 E-value=98 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=31.4
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...++||...-..- .+++++|++|.+++.. +|+ ...+.+||++-
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEE
Confidence 34567776654432 7789999999999876 333 25799999764
No 116
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=38.94 E-value=61 Score=30.88 Aligned_cols=75 Identities=8% Similarity=0.095 Sum_probs=49.0
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 302 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~ 302 (427)
...+++|...-.--.+..++|+|++|..++.. +|+ ...+.+||+|-.-.. ....+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 34555655443333355689999999999877 343 357899998764432 134556668
Q ss_pred eEEEEEecHHHHHHHH
Q 014323 303 NVEAFAINTDDLRAIV 318 (427)
Q Consensus 303 ~~~ll~i~~~df~~ll 318 (427)
++.++.++-.-+.+-+
T Consensus 331 ~~~l~~~~d~p~~~~l 346 (354)
T 2d40_A 331 DSVLFSFSDRPVQEAL 346 (354)
T ss_dssp EEEEEEEESHHHHHHT
T ss_pred CEEEEEEcCHHHHHHh
Confidence 8999988766555443
No 117
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=38.63 E-value=58 Score=27.54 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=30.7
Q ss_pred eeecCCcEEEe--cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 224 VLYVQECCIVK--EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 224 ~~~~kge~I~~--eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..+++|...-. -.....++++|++|.+.+.. +++ ...+.+||++-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45667766542 12334789999999999876 333 35799999774
No 118
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=38.34 E-value=43 Score=26.62 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=30.7
Q ss_pred ceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+++|..+-.---. ..++++|++|.+.+.. +++ ...+.+||++-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 4457777765322222 4689999999998876 333 25788998763
No 119
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=38.00 E-value=31 Score=29.24 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=24.2
Q ss_pred CCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 238 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 238 ~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..+.++||++|.+.+.. +++ ...+.+||+|=
T Consensus 109 ~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46789999999999887 333 25789999874
No 120
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=37.75 E-value=40 Score=26.44 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=30.3
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+++|..+-.---...++++|++|.+++... ++ ...+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 345566665533333467899999999987753 33 24788888763
No 121
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=37.62 E-value=32 Score=33.76 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=38.3
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.+....+.||..+..--...+++++|++|.+++...+.+... ...+.+||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355677888887655555678999999999998765433222 35799999874
No 122
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=36.91 E-value=51 Score=25.61 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=45.2
Q ss_pred eeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEc--
Q 014323 224 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV-- 301 (427)
Q Consensus 224 ~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al-- 301 (427)
..+++|...-.---...++++|++|.+.+.. +++ ...+.+||++---. + ....+.+.
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~~-----------~---~~H~~~~~~~ 97 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIPL-----------D---SEHHVINNNQ 97 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEECT-----------T---CCEEEEECSS
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEECC-----------C---CcEEeEeCCC
Confidence 3455555332222346689999999998876 333 25788998764322 0 12344443
Q ss_pred ceEE--EEEecHHHHHHHHHHc
Q 014323 302 TNVE--AFAINTDDLRAIVYQY 321 (427)
Q Consensus 302 ~~~~--ll~i~~~df~~ll~~~ 321 (427)
++++ ++.++.+-+..++...
T Consensus 98 ~~~~~~~i~f~~~~~~~~~~~~ 119 (128)
T 4i4a_A 98 EDFHFYTIWWDKESTLNFLTRL 119 (128)
T ss_dssp SCEEEEEEEECHHHHHHHHHHH
T ss_pred CCEEEEEEEECHHHHHHHHHhc
Confidence 3333 4567777777766665
No 123
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=35.57 E-value=74 Score=20.80 Aligned_cols=33 Identities=30% Similarity=0.241 Sum_probs=26.6
Q ss_pred ccCChhhHHHHHHHHHHHHHHH-HHHHHhHHHHH
Q 014323 94 TSTHEGENLLASFIIIASLLLL-LLVLGNLTIYL 126 (427)
Q Consensus 94 ~~~~~~E~~f~i~~~i~G~~~f-a~lig~i~~~l 126 (427)
.+.+..|+.+.+.+++.+++.= ++++.|+.++-
T Consensus 8 ~~~s~~E~aigl~v~f~~~L~PagWVLshL~~YK 41 (46)
T 1v54_M 8 TPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYK 41 (46)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4678899999998888887776 78888887653
No 124
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=35.55 E-value=32 Score=28.42 Aligned_cols=53 Identities=6% Similarity=-0.113 Sum_probs=30.8
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCee--eeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRN--TSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e--~~~~~~~l~~Gd~fG 275 (427)
...+++|..+-.--....++++|++|.+.+...+++++ .......+.+||++-
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 34466665431111234579999999999887552210 000035799999764
No 125
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=35.39 E-value=40 Score=27.55 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=34.1
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
+....+++|..+-.-.-+..+.++|++|.... ..|.... -..+++||++=.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEEE
Confidence 55677899988876666677889999999873 2222110 036778887643
No 126
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=35.10 E-value=40 Score=33.43 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=38.3
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
.+....++||..+..--...+++++|++|.+++...+.+... ...+.+||++--
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~~ 140 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIKI 140 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEEE
Confidence 344567888877665555578999999999998765433222 367999998753
No 127
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=35.00 E-value=1.1e+02 Score=27.01 Aligned_cols=47 Identities=9% Similarity=-0.150 Sum_probs=33.3
Q ss_pred ceeecC-CcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 223 PVLYVQ-ECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 223 ~~~~~k-ge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
...+++ |..+-.---+..++++|++|.+.+... ++ ...+.+||++--
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~i 196 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GC-----TVEMKFGTAYFC 196 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TE-----EEEECTTCEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEE
Confidence 345778 776654444567899999999988763 33 247999998754
No 128
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=34.97 E-value=62 Score=28.81 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=34.3
Q ss_pred ccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 221 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
+....+++|..+-.---+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445588888776555567889999999999876 343 2578999844
No 129
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=34.97 E-value=37 Score=33.53 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=39.2
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
.+....+.||..+..--...+++++|++|.+.+...+++... ...+.+||++--
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~i 115 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQKI 115 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEEE
Confidence 355677888888766655678999999999998765433221 367999998743
No 130
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=34.63 E-value=37 Score=28.26 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=30.0
Q ss_pred ceeecCCcEE--EecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 223 PVLYVQECCI--VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 223 ~~~~~kge~I--~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
...+.+|... .+.-...+++++|++|.+.+... ++ ...+.+||++--
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~i 95 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAAF 95 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEEE
Confidence 3455666533 12222236899999999998763 33 257899997643
No 131
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=34.41 E-value=56 Score=28.21 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=45.1
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEE
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 299 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~ 299 (427)
.+....+.+|..+-.-.-...++.+|++|.+. ++. ..+.+||++=.-. .+..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p~--------------g~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIADQ--------------ELEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEECS--------------SCCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeCc--------------CCccCCE
Confidence 45677889999998888888999999999965 222 3578888753221 1234555
Q ss_pred E--cceEEEEEe
Q 014323 300 S--VTNVEAFAI 309 (427)
Q Consensus 300 A--l~~~~ll~i 309 (427)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 6 678887764
No 132
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=34.00 E-value=48 Score=29.69 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=35.1
Q ss_pred hccceeecCCcEEEe-cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 220 CLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 220 ~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.+....++||..+=. .-....+.++|++|++.+.. +|+ ...+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 345667888876643 34456789999999998765 344 25799999865
No 133
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=33.93 E-value=61 Score=30.60 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=33.8
Q ss_pred ceeecCCcEEEecCCC-CceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
...+.+|...-..-.. ..++++|++|.+++...+ +|+.. ...+.+||++-
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 4556778765332233 789999999999988755 33222 25799999764
No 134
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=33.83 E-value=24 Score=34.47 Aligned_cols=49 Identities=18% Similarity=0.074 Sum_probs=32.8
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
....+++|+.+-.---...++|||++|.-..+.. +|+ ...+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~-----~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH-----KVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE-----EEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE-----EEEEcCCCEEEE
Confidence 4556777776644433456899999998755443 444 257899998754
No 135
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=33.52 E-value=55 Score=31.34 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=34.5
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fG 275 (427)
....+.+|..+-.---...++++|++|.+++...+ +|+.. ...+.+||++=
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 34556777765332233789999999999988766 35421 24789999763
No 136
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=33.49 E-value=14 Score=28.07 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=30.8
Q ss_pred cceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
+...++||+-+=..--+ ....|+|.+|.+++...++... ...+.+|+.+=
T Consensus 20 ~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~~ 70 (98)
T 3lag_A 20 TEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSYA 70 (98)
T ss_dssp EEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCEE
T ss_pred EEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEEE
Confidence 44567788777444333 4467888999999876544322 23578887653
No 137
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=32.76 E-value=67 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=42.5
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEEcc
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 302 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~Al~ 302 (427)
...+.||.---......+++.||++|.+.+...+ |++ ..+.+||++=.-+ + ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~-----~~L~~Gds~y~p~-----------~---~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS-----KKLTVDSYAYLPP-----------N---FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC-----EEECTTEEEEECT-----------T---CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE-----EEEcCCCEEEECC-----------C---CCEEEEeCC
Confidence 4567777653222344679999999999987631 332 4789999764322 1 133445557
Q ss_pred eEEEEEec
Q 014323 303 NVEAFAIN 310 (427)
Q Consensus 303 ~~~ll~i~ 310 (427)
+++++.+.
T Consensus 134 ~Ar~l~V~ 141 (266)
T 4e2q_A 134 SATLVVFE 141 (266)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 78887774
No 138
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=32.34 E-value=75 Score=31.87 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHhhccceeecCCcEEEec-CCCCceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeec
Q 014323 214 LSEMCKCLKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 214 l~~l~~~l~~~~~~kge~I~~e-Gd~~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fG 275 (427)
+..+--.+....+.||..+-.- -...+++++|++|.+++...+. |...+ ...+.+||+|=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 3444445666778888765332 2336899999999999877553 33322 25699999874
No 139
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=32.16 E-value=37 Score=26.04 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=27.3
Q ss_pred eecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEE-EcCCCCeec
Q 014323 225 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKK-YLSTGDFWG 275 (427)
Q Consensus 225 ~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~-~l~~Gd~fG 275 (427)
.+.+|..+-.---...++++|++|.+.+... ++. . .+.+||++-
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~-----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQE-----PHNYKEGNIVY 77 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEET--TSC-----CEEEETTCEEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CEE-----EEEeCCCCEEE
Confidence 4455554321112356799999999988763 332 3 688998763
No 140
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=31.70 E-value=73 Score=30.04 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=35.2
Q ss_pred ccceeecCCcEEEecCCC-CceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCeech
Q 014323 221 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 221 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~fGe 276 (427)
+....+++|..+-..-.+ ..++++|++|.+++...+ +|+.. ...+++||++--
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~i 290 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGYV 290 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEEE
Confidence 345567788766433233 389999999999987643 34311 257999998753
No 141
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=31.26 E-value=52 Score=25.55 Aligned_cols=46 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred ceeecCCcEEE--ecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIV--KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~--~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+++|..+- ..-+..+.+|+|++|.+.+.. +++ ...+.+||++=
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 77 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE-----KIELQAGDWLR 77 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34456665441 222223456779999998776 333 25788998764
No 142
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=31.14 E-value=74 Score=32.08 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=39.7
Q ss_pred HHHHHhhccceeecCCcEEEecC-CCCceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeec
Q 014323 214 LSEMCKCLKPVLYVQECCIVKEG-DPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 214 l~~l~~~l~~~~~~kge~I~~eG-d~~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fG 275 (427)
+..+--.+....+.||..+-.-= ...+++++|++|.+++...+. |.+.+ ...+.+||+|=
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~v 428 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVLV 428 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEEE
Confidence 33444455667788888653322 236899999999999877553 33322 25699999874
No 143
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=31.13 E-value=42 Score=26.65 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=22.2
Q ss_pred CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 239 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 239 ~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..++++|++|.+.+....+++ ...+.+||++-
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred CceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 445678999999987322343 35799999764
No 144
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=30.84 E-value=87 Score=30.44 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=50.2
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEEE-
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS- 300 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~A- 300 (427)
....+++|+..-.--.....+|||++|...+.. +|+ ...+++||+|-.-... ...+..
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge-----~~~~~~GD~~~iP~g~--------------~H~~~N~ 355 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK-----RFDWSEHDIFCVPAWT--------------WHEHCNT 355 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE-----EEEECTTCEEEECTTC--------------CEEEEEC
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE-----EEEEeCCCEEEECCCC--------------eEEeEeC
Confidence 445667776654444456789999999985443 444 3579999998654321 223333
Q ss_pred --cceEEEEEecHHHHHHHHHHc
Q 014323 301 --VTNVEAFAINTDDLRAIVYQY 321 (427)
Q Consensus 301 --l~~~~ll~i~~~df~~ll~~~ 321 (427)
-+++.++.++-.-+.+-+.-+
T Consensus 356 g~~e~~~ll~i~D~Pl~~~Lgl~ 378 (394)
T 3bu7_A 356 QERDDACLFSFNDFPVMEKLGFW 378 (394)
T ss_dssp CSSCCEEEEEEESHHHHHHTTCC
T ss_pred CCCCCeEEEEeeCHHHHHHhhhh
Confidence 357888888877666655433
No 145
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=30.68 E-value=61 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=30.3
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+.+|..+-.---...++++|++|.+.+...+ ++ ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KP----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SC----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC--EE----EEEECCCCEEE
Confidence 4456677655322223468999999999987632 21 14688998774
No 146
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=30.27 E-value=61 Score=26.55 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=29.7
Q ss_pred ceeecCCcE-E-EecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 223 PVLYVQECC-I-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 223 ~~~~~kge~-I-~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
...+++|.. . .+.-....++++|++|.+.+.. +++ ...+.+||++
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 345666653 1 1222246789999999999875 333 2579999987
No 147
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=30.14 E-value=70 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=36.4
Q ss_pred hccceeecCCcEEEe-cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 220 CLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 220 ~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.+....++||..|-. +-....+.++|++|+..+.. +|+ ...+++||++-
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~ 241 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 456678899998864 44555688999999998765 344 35789999874
No 148
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=29.22 E-value=76 Score=31.67 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=36.2
Q ss_pred hccceeecCCcEEEecCCC-CceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeec
Q 014323 220 CLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fG 275 (427)
.+....+.||..+-.-=-+ .+++++|++|.+++...+. |.+.+ ...+.+||++=
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 3455667888765332223 6799999999999877553 43322 25699999874
No 149
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=27.39 E-value=77 Score=30.23 Aligned_cols=52 Identities=15% Similarity=0.011 Sum_probs=34.3
Q ss_pred cceeecCCcEEEecCCCC-ceEEEEEeeEEEEEEe-cCCeeeeEEEEEcCCCCeech
Q 014323 222 KPVLYVQECCIVKEGDPI-CEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~~~~~-~~g~e~~~~~~~l~~Gd~fGe 276 (427)
....+++|...-..-... .++++|++|.+++... .+|... ...+.+||++--
T Consensus 260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~i 313 (385)
T 1j58_A 260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGYV 313 (385)
T ss_dssp EEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEEE
T ss_pred EEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEEE
Confidence 344677777664333344 7999999999998764 334222 257899998753
No 150
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=27.03 E-value=43 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=33.5
Q ss_pred ceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechh
Q 014323 223 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 277 (427)
Q Consensus 223 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~ 277 (427)
...+.+|+.+-.---...++|||++|.-..+.. +|+ ...+++||++---
T Consensus 107 ~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v-dG~-----~~~~~~GD~v~iP 155 (368)
T 3nw4_A 107 IQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV-NGD-----PVRMSRGDLLLTP 155 (368)
T ss_dssp EEEECTTCEEEEEEESSCEEEECSSCEEEEEEE-TTE-----EEEEETTCEEEEC
T ss_pred EEEECCCCccCceecccceEEEEEecceEEEEE-CCE-----EEEEeCCCEEEEC
Confidence 456778877655545567999999998743333 444 2578999987543
No 151
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=26.89 E-value=1.1e+02 Score=30.96 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHhhccceeecCCcEEEec-CCCCceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeec
Q 014323 214 LSEMCKCLKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 214 l~~l~~~l~~~~~~kge~I~~e-Gd~~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fG 275 (427)
+..+--.+....+.+|-++-.- --.++++.+|++|.+++...+. |...+ ...+.+||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEEE
Confidence 4444445667788888876432 2336899999999999877653 44332 36899999874
No 152
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=26.39 E-value=75 Score=28.84 Aligned_cols=47 Identities=9% Similarity=0.007 Sum_probs=32.4
Q ss_pred cceeecCCcEEEe-cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
....+.+|..+-. .--...++++|++|.+.+.. +++ ...+++||++=
T Consensus 185 ~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~-----~~~l~~GD~i~ 232 (274)
T 1sef_A 185 HILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE-----WYPVEKGDYIF 232 (274)
T ss_dssp EEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3446777776533 22356789999999999876 333 25789999874
No 153
>3ota_A Holo-[acyl-carrier-protein] synthase; structural genomics, center for structural genomics of infec diseases, csgid; HET: COA; 1.85A {Vibrio cholerae o1 biovar el tor} PDB: 3qmn_A*
Probab=26.17 E-value=71 Score=25.73 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=10.1
Q ss_pred hhHHHHhHHHHH
Q 014323 388 GTAIYATQFFTY 399 (427)
Q Consensus 388 ~~~~~AS~~~~~ 399 (427)
|..++|.|||+.
T Consensus 48 ~~~~lA~RfAAK 59 (129)
T 3ota_A 48 QGRFLAKRFAAK 59 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 677999999975
No 154
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.04 E-value=59 Score=22.11 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhcCC-----HHHHHHHHHHHH
Q 014323 139 KAREIEQWRTFEMLS-----QSLQQRVRNHQQ 165 (427)
Q Consensus 139 ~~~~l~~~m~~~~lp-----~~L~~rv~~y~~ 165 (427)
++.++.++++.+++| .+|..|+..|+.
T Consensus 14 kV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~ 45 (55)
T 2do1_A 14 KLAELKQECLARGLETKGIKQDLIHRLQAYLE 45 (55)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 467888999999998 589999998876
No 155
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=25.23 E-value=1e+02 Score=28.47 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=32.3
Q ss_pred ceeecCCcEEE-ecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIV-KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~-~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+.+|...- +.-+..+++++|++|.+++.. +|+ ...+.+||++-
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 96 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--DGE-----RYLLISGDYAN 96 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEEE--CCE-----EEEECCCCEEE
Confidence 34577777653 333337899999999999875 343 25799999764
No 156
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=25.18 E-value=51 Score=31.43 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.8
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeech
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 276 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe 276 (427)
....+++|+..-.---...++++|++|...+...+ |+ ...+++||+|--
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~-g~-----~~~l~~GD~~~i 151 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD-GE-----RTPMNEGDFILT 151 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET-TE-----EEECCTTCEEEE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEEEEEC-CE-----EEEEcCCCEEEE
Confidence 34567777766332334669999999998763433 33 358999998753
No 157
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=24.94 E-value=1.2e+02 Score=29.98 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHhhccceeecCCcEEEec-CCCCceEEEEEeeEEEEEEecC-CeeeeEEEEEcCCCCeec
Q 014323 214 LSEMCKCLKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNG-GRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 214 l~~l~~~l~~~~~~kge~I~~e-Gd~~~~lyfI~~G~v~~~~~~~-g~e~~~~~~~l~~Gd~fG 275 (427)
+..+--.+....+.+|.+..-- --.++++++|++|.+++...+. |.. .+ -..+.+||+|=
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~-~~-~~~l~~GDv~v 378 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQS-VF-DGEVREGQVLM 378 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE-EE-EEEEETTCEEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCE-EE-eeEEeCCcEEE
Confidence 4444445566677888765432 2336799999999999887653 433 22 25699999874
No 158
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=24.57 E-value=88 Score=25.20 Aligned_cols=50 Identities=8% Similarity=-0.092 Sum_probs=29.4
Q ss_pred eeecCCcEEEe-cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 224 VLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 224 ~~~~kge~I~~-eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
..+++|..+-. .-...+++++|++|.+.+...+....... ...+.+||++
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~-~~~l~~Gd~i 98 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF-QEEVFDDYAI 98 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE-EEEEETTCEE
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee-eEEECCCCEE
Confidence 35566654422 22234589999999999887443210000 1478899865
No 159
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=24.32 E-value=94 Score=26.51 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=24.6
Q ss_pred ceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 240 CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 240 ~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
.++++|++|.+.+...+...+.. ...+.+||++=
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~--~~~l~~GD~v~ 130 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAK--WISMEPGTVVY 130 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEE--EEEECTTCEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEE--EEEECCCcEEE
Confidence 69999999999988755321211 35899999763
No 160
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=23.71 E-value=1e+02 Score=26.23 Aligned_cols=31 Identities=6% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHhhCCCCCCccccccccc
Q 014323 392 YATQFFTYVRRSVKRNGGLPGGRVNITLAAS 422 (427)
Q Consensus 392 ~AS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (427)
...|+|..+++.+++.|...++++.+.+|+|
T Consensus 139 ~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t 169 (220)
T 2fmy_A 139 ARLRLAEFLVQAAMDTGLKVPQGIKLELGLN 169 (220)
T ss_dssp HHHHHHHHHHHHHHHHCEEETTEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeccCC
Confidence 4459999999999988876666666776665
No 161
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=23.42 E-value=71 Score=28.73 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=31.0
Q ss_pred ceeecCCcEEEec-C-CCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVKE-G-DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~e-G-d~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...++||...-.. . ...+++++|++|.+++.. +|+ ...+++||++-
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~--~~~-----~~~L~~Gd~~~ 110 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA--EGK-----TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE--CCE-----EEEECCCCEEE
Confidence 3456777654322 1 224679999999999886 344 25799999775
No 162
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=23.02 E-value=77 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=23.2
Q ss_pred CceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 239 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 239 ~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
..++++|++|.+.+...+ ++ ...+.+||++=
T Consensus 64 ~~E~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYED-IG-----AVMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEEETT-TE-----EEEEETTCEEE
T ss_pred CcEEEEEEeCEEEEEECC-cE-----EEEecCCCEEE
Confidence 378999999999987633 23 25789999763
No 163
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.74 E-value=1.4e+02 Score=21.31 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=26.3
Q ss_pred ccCChhhHHHHHHHHHHHHHHH-HHHHHhHHHH
Q 014323 94 TSTHEGENLLASFIIIASLLLL-LLVLGNLTIY 125 (427)
Q Consensus 94 ~~~~~~E~~f~i~~~i~G~~~f-a~lig~i~~~ 125 (427)
.+.+..|+.+.+.+++.+++.= +|++.|+.++
T Consensus 32 ~~~s~~E~aigltv~f~~~L~PagWVLshLe~Y 64 (70)
T 2y69_M 32 TPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNY 64 (70)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 5678999999998888887776 7888888765
No 164
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=22.63 E-value=1e+02 Score=26.29 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=22.7
Q ss_pred HHhHHHHHHHHHHHhhCCCCCCccccccccc
Q 014323 392 YATQFFTYVRRSVKRNGGLPGGRVNITLAAS 422 (427)
Q Consensus 392 ~AS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (427)
...|+|..+++.+++.|...++++.+.+|+|
T Consensus 135 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t 165 (222)
T 1ft9_A 135 IKQRIAGFFIDHANTTGRQTQGGVIVSVDFT 165 (222)
T ss_dssp HHHHHHHHHHHTCBCCCSCC--CCCCEECCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeccCC
Confidence 4459999999999888877666666777765
No 165
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=22.45 E-value=81 Score=30.89 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=37.3
Q ss_pred cceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 222 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 222 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
....+.||.++.-.--.++++++|++|.+.+...+.+... ...+.+||+|-
T Consensus 47 ~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~---~~~l~~GDv~~ 97 (418)
T 3s7i_A 47 VQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRK---SFNLDEGHALR 97 (418)
T ss_dssp EEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEE---EEEecCCCEEE
Confidence 3455678888776655678899999999988766544322 46889999884
No 166
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=22.39 E-value=1.3e+02 Score=25.74 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=28.8
Q ss_pred cCcccccCCHHHHHHHHhhccceeecCCcEEEecCCCCceEE
Q 014323 202 KVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMF 243 (427)
Q Consensus 202 ~v~~F~~l~~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~ly 243 (427)
..|.|.+++-.+.+++... ..|++|+++....+++.
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lt 48 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCV 48 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEE
Confidence 4699999999888777766 25999999998876543
No 167
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=22.12 E-value=75 Score=29.05 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=31.2
Q ss_pred ceeecCCcEEEe--cCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeec
Q 014323 223 PVLYVQECCIVK--EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 275 (427)
Q Consensus 223 ~~~~~kge~I~~--eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fG 275 (427)
...+++|...-. .....+++++|++|.+++... ++ ...+++||++-
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~--g~-----~~~L~~GD~i~ 119 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ--GQ-----VHAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEES--SC-----EEEECTTEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 445667766511 123467899999999998763 33 25799999764
No 168
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=21.81 E-value=1.1e+02 Score=25.56 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=44.1
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCcceeEE
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 299 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~tv~ 299 (427)
......++||..+-.-.-+..+..+|++|..+.. .++ ..+.+|+++=+-. .+..+..
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~--e~~-------~~~~~Gd~~~~P~--------------g~~H~~~ 99 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK--EHD-------WVAHAGSVVYETA--------------STRHTPQ 99 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEET--TSS-------CCBCTTCEEEECS--------------SEEECEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe--CCC-------eEECCCeEEEECC--------------CCcceeE
Confidence 4456778888887666556678889999998642 222 2578888754322 1355667
Q ss_pred Ec----ceEEEEEe
Q 014323 300 SV----TNVEAFAI 309 (427)
Q Consensus 300 Al----~~~~ll~i 309 (427)
+. ++|.++..
T Consensus 100 ~~~~~~e~~~~~~~ 113 (159)
T 3ebr_A 100 SAYAEGPDIITFNI 113 (159)
T ss_dssp ESSSSSSCEEEEEE
T ss_pred eCCCCCCCEEEEEE
Confidence 76 67877773
No 169
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=21.67 E-value=1.1e+02 Score=26.75 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHhhCCCCCCccccccccc
Q 014323 392 YATQFFTYVRRSVKRNGGLPGGRVNITLAAS 422 (427)
Q Consensus 392 ~AS~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (427)
...|+|+.+++.+++.|...+++..|.+|+|
T Consensus 165 ~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt 195 (243)
T 3la7_A 165 MGSRLVSFLLILCRDFGVPCADGITIDLKLS 195 (243)
T ss_dssp HHHHHHHHHHHHHHHHEEECSSSEEECSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEeccCC
Confidence 3459999999999988876666667777765
No 170
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.42 E-value=78 Score=23.00 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhcCC-----HHHHHHHHHHHH
Q 014323 139 KAREIEQWRTFEMLS-----QSLQQRVRNHQQ 165 (427)
Q Consensus 139 ~~~~l~~~m~~~~lp-----~~L~~rv~~y~~ 165 (427)
++.+++++++.|+|| .+|..|++.|+.
T Consensus 30 kVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~ 61 (75)
T 2kvu_A 30 KVAELKQELKLRSLPVSGTKTELIERLRAYQD 61 (75)
T ss_dssp CHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 467888999999999 589999998876
No 171
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=20.81 E-value=98 Score=27.77 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCee
Q 014323 238 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 274 (427)
Q Consensus 238 ~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~f 274 (427)
+.+++.+|++|.+.+.. +|. ...+++||.+
T Consensus 64 p~dE~~~VleG~~~lt~--~g~-----~~~~~~Gd~~ 93 (238)
T 3myx_A 64 PYTEMLVMHRGSVTLTS--GTD-----SVTLSTGESA 93 (238)
T ss_dssp SSEEEEEEEESEEEEEE--TTE-----EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEC--CCe-----EEEEcCCCEE
No 172
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=20.56 E-value=2.7e+02 Score=25.56 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccchhhhhcCCC-----------hhhHHHHHHHHHHHHhhc--CcccccCCHHHHHHH
Q 014323 151 MLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLP-----------VNLNWEMKSELCLEVLKK--VPMFQMMGKSILSEM 217 (427)
Q Consensus 151 ~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp-----------~~Lr~~i~~~l~~~~L~~--v~~F~~l~~~~l~~l 217 (427)
.|-.+|..-+.+||...-..+-.-+.++++++.| -+|+.-+..|. .++-+. +.+|.. .
T Consensus 136 dl~~ql~~~~~~f~~~~~~rtc~p~~~~~~~~~p~~~~~~~~~~pf~Lk~Wl~~h~-~ei~s~~~~sLFg~-~------- 206 (286)
T 2qnk_A 136 DLGTQLAPIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRSIMEPMSLDAWLDSHH-RELQAGTPLSLFGD-T------- 206 (286)
T ss_dssp SHHHHHHHHHHHHHTSHHHHHSCCCGGGSCSSCSSCCCCCCCCCCEEHHHHHHHTH-HHHHTTCCEESSCT-T-------
T ss_pred chHHhhHHHHHHHhcCcccccCCCChhhcccCCCCCCccccccCCcCHHHHHHhhh-HHHhcCCccccccC-C-------
Confidence 3445566666667665444444444555555443 45555555543 233322 234432 0
Q ss_pred HhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCCeeeeEEEEEcCCCCeechhhhhccCCCCCCCCCCCccee
Q 014323 218 CKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCA 297 (427)
Q Consensus 218 ~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~p~~~~~~~~s~~t 297 (427)
-..+...|.+|+.+..+... +..+.+++|...+.. +|. ...|.+||..---+ ...++
T Consensus 207 -~eteV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~--~~q-----~~~L~~~DsLLIpa--------------~~~y~ 263 (286)
T 2qnk_A 207 -YETQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM--GGR-----RLSLAPDDSLLVLA--------------GTSYA 263 (286)
T ss_dssp -SSEEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE--TTE-----EEEECTTEEEEECT--------------TCCEE
T ss_pred -CceEEEEEcCCccccccCcC-cEEEEEEcCceEEEE--CCe-----EEeccCCCEEEecC--------------CCeEE
Confidence 12345569999999999888 899999999987554 333 25688887542211 23678
Q ss_pred EEEcceEEEEEecH
Q 014323 298 LISVTNVEAFAINT 311 (427)
Q Consensus 298 v~Al~~~~ll~i~~ 311 (427)
..+.++|.++.+..
T Consensus 264 ~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 264 WERTQGSVALSVTQ 277 (286)
T ss_dssp EEECTTCEEEEEEE
T ss_pred EEecCCeEEEEEEE
Confidence 99999999998864
No 173
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=20.04 E-value=85 Score=30.53 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=37.3
Q ss_pred hccceeecCCcEEEecCCCCceEEEEEeeEEEEEEec-CCeeeeEEEEEcCCCCe
Q 014323 220 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDF 273 (427)
Q Consensus 220 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~-~g~e~~~~~~~l~~Gd~ 273 (427)
.+....+.||..+...--..+++++|++|..++...+ ++++ ...+.+||+
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~----~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR----EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE----EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE----EEEECCCCc
Confidence 3556778888887665556889999999999987654 3332 368999998
No 174
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=20.03 E-value=1.2e+02 Score=30.09 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=41.7
Q ss_pred HHHHHHhhccceeecCCcEEEecCCCCceEEEEEeeEEEEEEecCC-eeee------------------EEEEEcCCCCe
Q 014323 213 ILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGG-RNTS------------------VFKKYLSTGDF 273 (427)
Q Consensus 213 ~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~~~~~~~g-~e~~------------------~~~~~l~~Gd~ 273 (427)
.+..+--.+....+.||.++.--=....++++|++|...+.....+ .+.+ ..+..+.+||+
T Consensus 57 ~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv 136 (459)
T 2e9q_A 57 EFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDL 136 (459)
T ss_dssp HHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEE
T ss_pred hhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCE
Confidence 3443334555677899988755445688999999999988765332 2110 01357999998
Q ss_pred ech
Q 014323 274 WGE 276 (427)
Q Consensus 274 fGe 276 (427)
|--
T Consensus 137 ~~i 139 (459)
T 2e9q_A 137 LVV 139 (459)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
Done!