BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014324
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 49/375 (13%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+ +VGGSI+G++ A L AG DV V E+ + ++ L
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPE-----LVHYLLEQ 61
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L ++ +++ A +V A ++R + ++G LY PE +
Sbjct: 62 GVELDSISVPSSSMEYVDALTGERVGSVPA-----DWRFTSYDSIYGGLYELFGPERY-- 114
Query: 128 GHQYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSG 187
+ S C+ ++ + + + N ++ ADG S +R+ L + Y+G
Sbjct: 115 ---HTSKCL--VGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLG-IEPTYAG 168
Query: 188 YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK------RLN 241
Y WRGVL + D V+ + L H + Y + + RLN
Sbjct: 169 YVTWRGVLQPGEVADD--------VWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLN 220
Query: 242 WVWYINQPE--------PIMKGNSVTMRVSNDM-----IKNMHEEAEKVWLPEFVKVIKE 288
+ WY N E ++G + V N+ ++ H + E ++ P F ++
Sbjct: 221 FQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-FRDLVLN 279
Query: 289 TKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV 348
PF+ + D + ++ V+LIGDAA PH + DA L + K
Sbjct: 280 ASSPFVTVVADAT-VDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK--N 336
Query: 349 EGLLSALEEYQTVRL 363
L +L+ ++T +L
Sbjct: 337 HDLRGSLQSWETRQL 351
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/398 (21%), Positives = 143/398 (35%), Gaps = 73/398 (18%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
KA+++G I G+S A AL ++G D V E +P I W NG
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-------------KPVGAAISVWPNG 71
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
+ HL + T + R RD FR+ + +L P I
Sbjct: 72 VKCMAHLGMGDI-----METFGGPLRRMAYRD----FRSGE-----NMTQFSLAPLIERT 117
Query: 128 G------------HQYLSFCISEXXXXXXXXXXXLQTDEVIEI--------KGNLLVAAD 167
G + L + + + + + + G+LL+AAD
Sbjct: 118 GSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 177
Query: 168 GCLSSIRQSFLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS 226
G S++R L + RY+GY W G+ +E E + + +G+ L
Sbjct: 178 GSHSALRPWVLGFTPQRRYAGYVNWNGL-----VEIDEALAPGDQWTTFVGEGKQVSLMP 232
Query: 227 GTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI 286
+ FY ++ + P P + D ++ W P K+I
Sbjct: 233 VSAGRFY----------FFFDVPLP------AGLAEDRDTLRADLSRYFAGWAPPVQKLI 276
Query: 287 KETKEPFIN--AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLE 344
N ++D +P ++ V L+GDA H TTP + ++ DA+VLG
Sbjct: 277 AALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFR 336
Query: 345 KWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
+ + +AL EY+ R VL +R+ I G
Sbjct: 337 Q--TRDIAAALREYEAQRCDRVRDLVLKARKRCDITHG 372
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 136/389 (34%), Gaps = 55/389 (14%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
KA+++G I G+S A AL ++G D V E +P I W NG
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-------------KPVGAAISVWPNG 71
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARD-----DNFNFRAAHWADLHGLLYNALPP 122
HL + T + R RD + F A + G +
Sbjct: 72 VKCXAHLGXGDIX-----ETFGGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSR 126
Query: 123 EIFLR------GHQYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQS 176
R G + F + + G+LL+AADG S++R
Sbjct: 127 AELQREXLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPW 186
Query: 177 FLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235
L + RY+GY W G+ +E E + + +G+ L + FY
Sbjct: 187 VLGFTPQRRYAGYVNWNGL-----VEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFY-- 239
Query: 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN 295
++ + P P + D ++ W P K+I N
Sbjct: 240 --------FFFDVPLP------AGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTN 285
Query: 296 --AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLS 353
++D +P ++ V L+GDA H TTP + + DA+VLG + + +
Sbjct: 286 RIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVLGAVFRQ--TRDIAA 343
Query: 354 ALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
AL EY+ R VL +R+ I G
Sbjct: 344 ALREYEAQRCDRVRDLVLKARKRCDITHG 372
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 103/251 (41%), Gaps = 31/251 (12%)
Query: 158 IKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL 216
+ ++LV ADG S++R D + L + G WRGV +F D K M +
Sbjct: 156 LGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDG---KTMIVANDEH 212
Query: 217 GKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEK 276
L S H+ + L +NWV M ++ ++ N+ N E
Sbjct: 213 WSRLVAYPISARHAAEGKSL---VNWV--------CMVPSAAVGQLDNEADWNRDGRLED 261
Query: 277 VWLPEFVK----------VIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGL 326
V LP F ++ + M D DPL + L+GDAAH P G
Sbjct: 262 V-LPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGA 320
Query: 327 RSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP 386
+ +ILD + L +L + + +AL EY+ R P +K +L +R R K+ A
Sbjct: 321 NGASQAILDGIELAAALAR--NADVAAALREYEEARRPTANKIILANRE--REKEEWAAA 376
Query: 387 DREPFNTKTAS 397
R P K+A+
Sbjct: 377 SR-PKTEKSAA 386
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 31/251 (12%)
Query: 158 IKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL 216
+ ++LV ADG S++R D + L + G WRGV +F D + +
Sbjct: 156 LGADVLVGADGIHSAVRAHLHPDQRPLSHGGITXWRGVTEFDRFLDGKTXIVANDEH--W 213
Query: 217 GKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEK 276
+ + + + S H+ + L +NWV + ++ ++ N+ N E
Sbjct: 214 SRLVAYPI-SARHAAEGKSL---VNWVCXVP--------SAAVGQLDNEADWNRDGRLED 261
Query: 277 VWLPEFVK----------VIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGL 326
V LP F ++ + D DPL + L+GDAAH P G
Sbjct: 262 V-LPFFADWDLGWFDIRDLLTRNQLILQYPXVDRDPLPHWGRGRITLLGDAAHLXYPXGA 320
Query: 327 RSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP 386
+ +ILD + L +L + + +AL EY+ R P +K +L +R R K+ A
Sbjct: 321 NGASQAILDGIELAAALAR--NADVAAALREYEEARRPTANKIILANRE--REKEEWAAA 376
Query: 387 DREPFNTKTAS 397
R P K+A+
Sbjct: 377 SR-PKTEKSAA 386
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/357 (17%), Positives = 137/357 (38%), Gaps = 29/357 (8%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNGRP 69
I+GG G++ A L + G DV V E+ Q ++ G
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA--GLL 87
Query: 70 HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGH 129
+ +P+ ++ A N T+ + ++ F+ + DL +L N+L + +
Sbjct: 88 QTYYDLALPMGVNIADAAGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDR 147
Query: 130 QYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYC 189
+ + + +T +L++ A+G +S +R+ F++D ++ +G
Sbjct: 148 KLVMLEPGKKKWTLTFENKPSET-------ADLVILANGGMSKVRK-FVTDTEVEETGTF 199
Query: 190 AWRGVLDFSGIEDS---EIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
+ + I ++ G R + G L+ + + N L++
Sbjct: 200 NIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNN----------NGALHFGISF 249
Query: 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI 306
P+ V + N ++ + +E W + ++I T F+ PL++
Sbjct: 250 KTPDEWKNQTQVDFQNRNSVVDFLLKEFSD-WDERYKELIHTTLS-FVGLATRIFPLEKP 307
Query: 307 FWSN----VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
+ S + +IGDAAH P + N ++DA++L +L + A++ Y+
Sbjct: 308 WKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 364
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/357 (17%), Positives = 136/357 (38%), Gaps = 29/357 (8%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNGRP 69
I+GG G++ A L + G DV V E+ Q ++ G
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA--GLL 87
Query: 70 HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGH 129
+ +P+ ++ N T+ + ++ F+ + DL +L N+L + +
Sbjct: 88 QTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDR 147
Query: 130 QYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYC 189
+ + + +T +L++ A+G +S +R+ F++D ++ +G
Sbjct: 148 KLVMLEPGKKKWTLTFENKPSET-------ADLVILANGGMSKVRK-FVTDTEVEETGTF 199
Query: 190 AWRGVLDFSGIEDS---EIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
+ + I ++ G R + G L+ + + N L++
Sbjct: 200 NIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNN----------NGALHFGISF 249
Query: 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI 306
P+ V + N ++ + +E W + ++I T F+ PL++
Sbjct: 250 KTPDEWKNQTQVDFQNRNSVVDFLLKEFSD-WDKRYKELIHTTLS-FVGLATRIFPLEKP 307
Query: 307 FWSN----VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
+ S + +IGDAAH P + N ++DA++L +L + A++ Y+
Sbjct: 308 WKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 364
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/357 (17%), Positives = 136/357 (38%), Gaps = 29/357 (8%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNGRP 69
I+GG G++ A L + G DV V E+ Q ++ G
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA--GLL 87
Query: 70 HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGH 129
+ +P+ ++ N T+ + ++ F+ + DL +L N+L + +
Sbjct: 88 QTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDR 147
Query: 130 QYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYC 189
+ + + +T +L++ A+G +S +R+ F++D ++ +G
Sbjct: 148 KLVMLEPGKKKWTLTFENKPSET-------ADLVILANGGMSKVRK-FVTDTEVEETGTF 199
Query: 190 AWRGVLDFSGIEDS---EIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
+ + I ++ G R + G L+ + + N L++
Sbjct: 200 NIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNN----------NGALHFGISF 249
Query: 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI 306
P+ V + N ++ + +E W + ++I T F+ PL++
Sbjct: 250 KTPDEWKNQTQVDFQNRNSVVDFLLKEFSD-WDERYKELIHTTLS-FVGLATRIFPLEKP 307
Query: 307 FWSN----VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
+ S + +IGDAAH P + N ++DA++L +L + A++ Y+
Sbjct: 308 WKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 364
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 140/396 (35%), Gaps = 105/396 (26%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+A + GG AG++ A AL + GWDV + EK R I W NG
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-------------RAFGAGIYLWHNG 59
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L L + D Q + T + + + +N LP I R
Sbjct: 60 LRVLEGLGALD---DVLQGSHTPPTYETWMHNKSVSKET----------FNGLPWRIMTR 106
Query: 128 GHQYLSF------------CISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQ 175
H + + SE LQT EV+E +L+V ADG S +R
Sbjct: 107 SHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLE--ADLIVGADGVGSKVRD 164
Query: 176 S--FLSD--------FKL------RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKC 219
S F D +L + G+ W +D M +P + +
Sbjct: 165 SIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTID------------MWNFWPRVQRI 212
Query: 220 LYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWL 279
LY + ++ L+ P +G+SV + + +VW+
Sbjct: 213 LYS--PCNENELYLGLM-----------APAADPRGSSVPIDL-------------EVWV 246
Query: 280 PEF----VKVIKETKEPFINAMYD-CDPLKQIFWS--NVVLIGDAAHPTTPHGLRSTNMS 332
F +I+ K A YD + K W+ V L+GDAAH P + +
Sbjct: 247 EMFPFLEPCLIEAAK--LKTARYDKAETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCA 304
Query: 333 ILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSK 368
+++A L + LE+ + AL ++T P+T +
Sbjct: 305 MVNAFSLSQDLEE--GSSVEDALVAWETRIRPITDR 338
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+A + GG AG++ A AL + GWDV + EK R I W NG
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-------------RAFGAGIYLWHNG 59
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L L + D Q + T + + + +N LP I R
Sbjct: 60 LRVLEGLGALD---DVLQGSHTPPTYETWMHNKSVSKET----------FNGLPWRIMTR 106
Query: 128 GHQYLSF------------CISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQ 175
H + + SE LQT EV+E +L+V ADG S +R
Sbjct: 107 SHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLE--ADLIVGADGVGSKVRD 164
Query: 176 SF 177
S
Sbjct: 165 SI 166
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 304 KQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLG----KSLEKWGVEGLLSALEEYQ 359
K+ V+L GDAAH P G + N + DA+ LG + WG E L L+ Y
Sbjct: 317 KRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEEL---LDTYH 373
Query: 360 TVRLPVTSKQVLHSR 374
R PV + +L++R
Sbjct: 374 DERHPVAERVLLNTR 388
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+A + GG AG++ A AL + GWDV + EK R I W NG
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-------------RAFGAGIYLWHNG 59
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L L + D Q + T + + + +N LP I R
Sbjct: 60 LRVLEGLGALD---DVLQGSHTPPTYETWMHNKSVSKET----------FNGLPWRIMTR 106
Query: 128 GHQYLSF------------CISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQ 175
H + + SE LQT EV+E +L+V ADG S +R
Sbjct: 107 SHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLE--ADLIVGADGVGSKVRD 164
Query: 176 SF 177
S
Sbjct: 165 SI 166
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 298 YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEE 357
Y+ L V L+GDAAH P + ++++A L + LE+ + AL
Sbjct: 270 YETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--GSSVEDALVA 327
Query: 358 YQTVRLPVTSK 368
++T P+T +
Sbjct: 328 WETRIRPITDR 338
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+A + GG AG++ A AL + GWDV + EK R I W NG
Sbjct: 49 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-------------RAFGAGIYLWHNG 95
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L L + D Q + T + + + +N LP I R
Sbjct: 96 LRVLEGLGALD---DVLQGSHTPPTYETWMHNKSVSKET----------FNGLPWRIMTR 142
Query: 128 GHQYLSF------------CISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQ 175
H + + SE LQT EV+E +L+V ADG S +R
Sbjct: 143 SHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLE--ADLIVGADGVGSKVRD 200
Query: 176 SF 177
S
Sbjct: 201 SI 202
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 298 YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEE 357
Y+ L V L+GDAAH P + ++++A L + LE+ + AL
Sbjct: 306 YETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--GSSVEDALVA 363
Query: 358 YQTVRLPVTSK 368
++T P+T +
Sbjct: 364 WETRIRPITDR 374
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+A + GG AG++ A AL + GWDV + EK R I W NG
Sbjct: 13 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-------------RAFGAGIYLWHNG 59
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L L + D Q + T + + + +N LP I R
Sbjct: 60 LRVLEGLGALD---DVLQGSHTPPTYETWMHNKSVSKET----------FNGLPWRIMTR 106
Query: 128 GHQYLSF------------CISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQ 175
H + + SE LQT EV+E +L+V ADG S +R
Sbjct: 107 SHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLE--ADLIVGADGVGSKVRD 164
Query: 176 SF 177
S
Sbjct: 165 SI 166
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 62/357 (17%), Positives = 136/357 (38%), Gaps = 29/357 (8%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNGRP 69
I+GG G++ A L + G DV V E+ Q ++ G
Sbjct: 10 AIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA--GLL 67
Query: 70 HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGH 129
+ +P+ ++ N T+ + ++ F+ + DL +L N+L + +
Sbjct: 68 QTYYDLALPMGVNIADKKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDR 127
Query: 130 QYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYC 189
+ + + +T +L++ A+G +S +R+ F++D ++ +G
Sbjct: 128 KLVMLEPGKKKWTLTFENKPSET-------ADLVILANGGMSKVRK-FVTDTEVEETGTF 179
Query: 190 AWRGVLDFSGIEDS---EIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
+ + I ++ G R + G L+ + + N L++
Sbjct: 180 NIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNN----------NGALHFGISF 229
Query: 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI 306
P+ V + N ++ + ++ W + ++I T F+ PL++
Sbjct: 230 KTPDEWKNQTQVDFQNRNSVVDFLLKKFSD-WDERYKELIHATLS-FVGLATRIFPLEKP 287
Query: 307 FWSN----VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
+ S + +IGDAAH P + N ++DA++L +L + A++ Y+
Sbjct: 288 WKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 344
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 50/245 (20%)
Query: 152 TDE----VIEIKG---------NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFS 198
TDE V+E++G +V DG S++R++ DF G A R + +
Sbjct: 134 TDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFP----GTSASREMF-LA 188
Query: 199 GIEDSEII-KGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNS 257
I EI + + P LG + L G + ++ +R P P + +
Sbjct: 189 DIRGCEITPRPIGETVP-LGMVMSAPLGDGVDRI---IVCERGAPARRRTGPPPYQEVAA 244
Query: 258 VTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFW---SNVVLI 314
R++ I + E VW+ F DP +Q+ V+L
Sbjct: 245 AWQRLTGQDISH----GEPVWVSAF-----------------GDPARQVSAYRRGRVLLA 283
Query: 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSA--LEEYQTVRLPVTSKQVLH 372
GD+AH P G + N+S+ D++ LG L V G A L+ Y R PV + +++
Sbjct: 284 GDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAV-VSGRAPAGLLDTYHEERHPVGRRLLMN 342
Query: 373 SRRLG 377
++ G
Sbjct: 343 TQAQG 347
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
+A + GG AG++ A AL + GWDV + EK R I W NG
Sbjct: 49 RAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL-------------RAFGAGIYLWHNG 95
Query: 68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
L L + D Q + T + + + +N LP I R
Sbjct: 96 LRVLEGLGALD---DVLQGSHTPPTYETWXHNKSVSKET----------FNGLPWRIXTR 142
Query: 128 GHQYLSF------------CISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQ 175
H + + SE LQT EV+E +L+V ADG S +R
Sbjct: 143 SHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLE--ADLIVGADGVGSKVRD 200
Query: 176 SF 177
S
Sbjct: 201 SI 202
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 298 YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEE 357
Y+ L V L+GDAAH P + + ++A L + LE+ + AL
Sbjct: 306 YETTKLDSWTRGKVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEE--GSSVEDALVA 363
Query: 358 YQTVRLPVTSK 368
++T P+T +
Sbjct: 364 WETRIRPITDR 374
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 278 WLPEFVKVIKETKEPFINAMYDCDPLKQIFW--SNVVLIGDAAHPTTPHGLRSTNMSILD 335
W P +++++ I+ ++ + W S V L+GDA H TP N ++ D
Sbjct: 278 WDPSLHTLVQQSDXENISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRD 337
Query: 336 AMVLGKSLEK--WGVEGLLSALEEYQ 359
A++L + L G E L+ A+ +Y+
Sbjct: 338 ALLLTQKLASVASGHEELVKAISDYE 363
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF------- 293
W WYI + + +V R + + IK+ HE A ++ +IKE P
Sbjct: 218 GWFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDR-CPIIKEYLAPATRVTTGD 276
Query: 294 ---INAMYDCDPLKQIFWSN-VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSL 343
I D FW N + L+GDAA P +++ A+++ +++
Sbjct: 277 YGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAI 330
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLG----KSLEKWGVEGLLSALEE 357
V L GDAAH +P G N I A LG +L W GLL+ EE
Sbjct: 309 GRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEE 361
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLG----KSLEKWGVEGLLSALEEYQ 359
V L GDAAH +P G N I A LG +L W GLL+ EE +
Sbjct: 309 GRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEER 363
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 63/357 (17%), Positives = 131/357 (36%), Gaps = 29/357 (8%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNGRP 69
I+GG G++ A L + G DV V E+ Q + G
Sbjct: 31 AIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAXKKA--GLL 88
Query: 70 HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGH 129
+ +P ++ N T+ + ++ F+ + DL +L N+L + +
Sbjct: 89 QTYYDLALPXGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDR 148
Query: 130 QYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYC 189
+ + + +T +L++ A+G S +R+ F++D ++ +G
Sbjct: 149 KLVXLEPGKKKWTLTFENKPSET-------ADLVILANGGXSKVRK-FVTDTEVEETGTF 200
Query: 190 AWRGVLDFSGIEDS---EIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
+ + I ++ G R G L+ + + N L++
Sbjct: 201 NIQADIHQPEINCPGFFQLCNGNRLXASHQGNLLFANPNN----------NGALHFGISF 250
Query: 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI 306
P+ V + N ++ + +E W + ++I T F+ PL++
Sbjct: 251 KTPDEWKNQTQVDFQNRNSVVDFLLKEFSD-WDERYKELIHTTLS-FVGLATRIFPLEKP 308
Query: 307 FWSN----VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
+ S + IGDAAH P + N ++DA++L +L + A++ Y+
Sbjct: 309 WKSKRPLPITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 365
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 261 RVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP 320
R++ D I + AE VW+ F ++ E V+L GD+AH
Sbjct: 247 RLTGDDIAH----AEPVWVSAFGNATRQVTE--------------YRRGRVILAGDSAHI 288
Query: 321 TTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSA--LEEYQTVRLPVTSKQVLHSRRLGR 378
P G + N SI DA+ LG L V G + L+ Y + R V + +++++ G
Sbjct: 289 HLPAGGQGMNTSIQDAVNLGWKLGAV-VNGTATEELLDSYHSERHAVGKRLLMNTQAQGL 347
Query: 379 IKQGLALPDREPFN 392
+ L+ P+ +P
Sbjct: 348 LF--LSGPEVQPLR 359
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
+ IGDAAH P + N ++DA++L +L + A++ Y+
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 344
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 154 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 186
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 154 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 186
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 106 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 138
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
+ K+ GK +I+G ++G++ A L G DV +LE
Sbjct: 273 LPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 308
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLE 36
+ VIVG ++G+S A+ L AG V VLE
Sbjct: 48 RVVIVGAGMSGLSAAYVLANAGHQVTVLE 76
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
VIVG +AG+S A+ L AG V VLE
Sbjct: 37 VIVGAGMAGLSAAYVLAGAGHQVTVLE 63
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 8 KAVIVGGSIAGISCAHALLRAGWDVVVLE 36
+ +IVG IAG+ L RAG DV +LE
Sbjct: 46 RILIVGAGIAGLVAGDLLTRAGHDVTILE 74
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + N++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVY 213
++ ++ +V DG S++R++ + S AW GV+D + D ++ +
Sbjct: 194 QIETVQARYVVGCDGARSNVRRAIGRQL-VGDSANQAW-GVMDVLAVTDFPDVRYKVAIQ 251
Query: 214 PDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEE 273
+ G L G FY ++K ++ E + N ++ + +H
Sbjct: 252 SEQGNVLIIPREGGHLVRFYVEMDK-------LDADERVASRNITVEQLIATAQRVLHPY 304
Query: 274 AEKV-----W-LPEFVKVIKETKEPFINAMYDCD-PLKQIFWSNVVLIGDAAHPTTPHGL 326
+V W + E + I + ++A+ D PL ++F + GDA H +P
Sbjct: 305 KLEVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVF-----IAGDACHTHSPKAG 359
Query: 327 RSTNMSILDAMVLG 340
+ N S+ D+ LG
Sbjct: 360 QGMNFSMQDSFNLG 373
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVV 34
KK+ GK ++VG S + C+ L G+DV V
Sbjct: 220 KKDPGKTLVVGASYVALECSGFLNSLGYDVTV 251
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
V+VG ++G+S A+ L AG V VLE
Sbjct: 37 VVVGAGMSGLSAAYVLAGAGHKVTVLE 63
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37
M + +VGG I+G++ AH L G D V+LE
Sbjct: 11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLES 47
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 1 MEKKEKGK-------AVIVGGSIAGISCAHALLRAGWDVVVLE 36
ME +EK V++GG I+G+S A L G V+VLE
Sbjct: 1 MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLE 43
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 248 QPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEF----VKVIKETKEPFINAMYDCDP 302
Q + I++ ++ + D+I + EE ++W PE V++IK + I DC P
Sbjct: 239 QYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLP 297
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
Length = 346
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 248 QPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEF----VKVIKETKEPFINAMYDCDP 302
Q + I++ ++ + D+I + EE ++W PE V++IK + I DC P
Sbjct: 219 QYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLP 277
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 248 QPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEF----VKVIKETKEPFINAMYDCDP 302
Q + I++ ++ + D+I + EE ++W PE V++IK + I DC P
Sbjct: 219 QYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLP 277
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
V+VG ++G+S A+ L AG V VLE
Sbjct: 37 VVVGAGMSGLSAAYVLSGAGHQVTVLE 63
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 309 SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
+ L GDAAH P G + +++ D L + L K EG LE Y +
Sbjct: 279 GRLFLAGDAAHIVPPTGAKGLDLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
V++GG AG+ A L +AG+ V VLE
Sbjct: 15 VVLGGGPAGLCSAFELQKAGYKVTVLE 41
>pdb|3EB2|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
Length = 300
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQV 370
+AA P + S+ DA+ K EK G +G+L+ LE Y P+ Q+
Sbjct: 68 EAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAY----FPLKDAQI 118
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
V++GG I+G+S A L G V+VLE
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
V++GG I+G+S A L G V+VLE
Sbjct: 6 VVIGGGISGLSAAKLLTEYGVSVLVLE 32
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLE 36
IVG I+G++ A AL +AG V V+E
Sbjct: 9 AIVGAGISGLAAATALRKAGLSVAVIE 35
>pdb|4AT0|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1
pdb|4AT2|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1 In Complex
With 4-Androstene-3,17- Dione
Length = 510
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEK 37
V+ G IAG++ + RAG DV+VLE+
Sbjct: 45 VVAGYGIAGVAASIEAARAGADVLVLER 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,071,972
Number of Sequences: 62578
Number of extensions: 467960
Number of successful extensions: 1226
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1108
Number of HSP's gapped (non-prelim): 128
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)