Query 014324
Match_columns 426
No_of_seqs 204 out of 2193
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07236 hypothetical protein; 100.0 1.2E-45 2.7E-50 355.4 36.7 356 1-383 1-378 (386)
2 PRK07538 hypothetical protein; 100.0 2.1E-45 4.4E-50 356.8 34.8 379 7-414 1-403 (413)
3 TIGR03219 salicylate_mono sali 100.0 2.6E-45 5.6E-50 356.4 32.8 358 7-383 1-376 (414)
4 PRK08294 phenol 2-monooxygenas 100.0 6.4E-45 1.4E-49 366.6 34.7 383 5-419 31-445 (634)
5 PRK06753 hypothetical protein; 100.0 1.8E-44 3.9E-49 346.4 34.2 338 7-382 1-340 (373)
6 PRK06475 salicylate hydroxylas 100.0 2.8E-44 6.2E-49 347.4 32.8 347 7-380 3-360 (400)
7 PRK08163 salicylate hydroxylas 100.0 9.7E-44 2.1E-48 344.1 32.4 346 5-382 3-358 (396)
8 PRK07588 hypothetical protein; 100.0 1.6E-43 3.5E-48 341.5 33.3 342 7-382 1-351 (391)
9 PLN02927 antheraxanthin epoxid 100.0 6.9E-43 1.5E-47 345.9 36.2 350 5-382 80-448 (668)
10 PRK05868 hypothetical protein; 100.0 1.4E-42 3E-47 331.3 33.0 342 8-381 3-353 (372)
11 PRK06183 mhpA 3-(3-hydroxyphen 100.0 8.5E-43 1.8E-47 348.6 30.2 342 4-383 8-361 (538)
12 PRK07045 putative monooxygenas 100.0 2.9E-42 6.3E-47 332.5 32.8 347 4-382 3-360 (388)
13 PRK08013 oxidoreductase; Provi 100.0 1.3E-42 2.7E-47 335.7 29.1 345 4-383 1-360 (400)
14 PRK06847 hypothetical protein; 100.0 5E-42 1.1E-46 329.8 32.9 339 6-382 4-353 (375)
15 COG0654 UbiH 2-polyprenyl-6-me 100.0 1.5E-42 3.3E-47 333.2 28.7 344 6-383 2-353 (387)
16 PRK06617 2-octaprenyl-6-methox 100.0 3.4E-43 7.5E-48 336.6 23.6 334 7-383 2-341 (374)
17 PF01494 FAD_binding_3: FAD bi 100.0 7.3E-43 1.6E-47 333.4 25.3 339 6-372 1-355 (356)
18 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 8.7E-42 1.9E-46 328.1 30.8 346 6-384 2-354 (390)
19 PRK08243 4-hydroxybenzoate 3-m 100.0 8.9E-42 1.9E-46 329.1 30.7 347 6-383 2-353 (392)
20 PRK06184 hypothetical protein; 100.0 8.1E-42 1.7E-46 339.2 30.8 340 4-381 1-353 (502)
21 PRK06126 hypothetical protein; 100.0 8E-42 1.7E-46 342.8 30.4 351 1-382 2-377 (545)
22 PRK08850 2-octaprenyl-6-methox 100.0 1E-41 2.3E-46 330.2 30.2 345 1-383 1-360 (405)
23 PLN02985 squalene monooxygenas 100.0 1.4E-41 3E-46 334.3 30.8 382 4-423 41-438 (514)
24 TIGR01989 COQ6 Ubiquinone bios 100.0 3.6E-41 7.8E-46 328.6 30.5 372 7-420 1-434 (437)
25 PRK08244 hypothetical protein; 100.0 4E-41 8.6E-46 333.8 28.6 338 6-381 2-345 (493)
26 PRK08849 2-octaprenyl-3-methyl 100.0 1.6E-41 3.4E-46 326.4 24.5 363 5-419 2-374 (384)
27 KOG2614 Kynurenine 3-monooxyge 100.0 3.6E-41 7.9E-46 305.3 24.5 328 6-364 2-359 (420)
28 PRK07364 2-octaprenyl-6-methox 100.0 8.2E-41 1.8E-45 325.6 28.3 344 5-382 17-371 (415)
29 PRK05714 2-octaprenyl-3-methyl 100.0 1.4E-41 2.9E-46 329.7 22.4 345 6-384 2-364 (405)
30 PRK09126 hypothetical protein; 100.0 1.4E-40 3E-45 321.6 28.3 343 6-382 3-357 (392)
31 PTZ00367 squalene epoxidase; P 100.0 1E-39 2.2E-44 322.3 34.8 374 5-424 32-453 (567)
32 PRK07494 2-octaprenyl-6-methox 100.0 3.7E-41 8.1E-46 325.0 24.2 341 2-383 3-355 (388)
33 PRK07190 hypothetical protein; 100.0 3.5E-40 7.6E-45 323.5 30.7 334 3-380 2-347 (487)
34 PRK08773 2-octaprenyl-3-methyl 100.0 8.2E-41 1.8E-45 322.8 25.6 372 1-422 1-385 (392)
35 PRK07333 2-octaprenyl-6-methox 100.0 3.8E-40 8.2E-45 319.8 28.7 342 7-383 2-358 (403)
36 PRK06996 hypothetical protein; 100.0 8.9E-40 1.9E-44 315.6 30.7 341 4-382 9-362 (398)
37 PRK08132 FAD-dependent oxidore 100.0 1.1E-39 2.3E-44 327.1 32.4 338 5-382 22-373 (547)
38 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.2E-40 4.7E-45 319.3 25.4 340 8-382 1-350 (382)
39 PRK06185 hypothetical protein; 100.0 2.7E-39 5.8E-44 314.1 32.7 349 1-384 1-361 (407)
40 PRK06834 hypothetical protein; 100.0 1.1E-39 2.4E-44 320.3 30.0 334 4-381 1-338 (488)
41 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.1E-39 2.4E-44 314.9 27.1 341 8-382 1-353 (385)
42 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.5E-39 3.2E-44 314.2 22.5 343 4-382 3-358 (391)
43 PRK05732 2-octaprenyl-6-methox 100.0 1.1E-38 2.3E-43 308.9 27.0 344 4-382 1-359 (395)
44 PRK07608 ubiquinone biosynthes 100.0 3.1E-38 6.7E-43 304.9 29.7 341 6-382 5-356 (388)
45 PRK08255 salicylyl-CoA 5-hydro 100.0 2E-33 4.3E-38 289.8 20.0 326 7-383 1-342 (765)
46 PLN00093 geranylgeranyl diphos 100.0 1.1E-31 2.5E-36 260.2 30.6 333 5-382 38-386 (450)
47 TIGR02023 BchP-ChlP geranylger 100.0 2.7E-31 5.8E-36 255.7 31.3 323 7-380 1-335 (388)
48 PRK11445 putative oxidoreducta 100.0 7.2E-31 1.6E-35 249.0 27.7 312 7-367 2-318 (351)
49 TIGR02028 ChlP geranylgeranyl 100.0 3.7E-30 8.1E-35 247.6 30.7 330 7-382 1-347 (398)
50 TIGR02032 GG-red-SF geranylger 100.0 4.3E-30 9.4E-35 238.8 24.9 291 7-343 1-295 (295)
51 KOG1298 Squalene monooxygenase 100.0 3.2E-30 7E-35 229.8 22.0 383 5-422 44-437 (509)
52 COG0644 FixC Dehydrogenases (f 100.0 2.6E-29 5.6E-34 242.0 27.5 329 5-379 2-338 (396)
53 PRK10015 oxidoreductase; Provi 100.0 1.8E-27 4E-32 230.6 28.9 350 4-382 3-373 (429)
54 PRK10157 putative oxidoreducta 100.0 1.6E-26 3.4E-31 224.4 31.0 348 5-381 4-371 (428)
55 TIGR01790 carotene-cycl lycope 99.9 7.3E-25 1.6E-29 211.6 29.4 318 8-368 1-321 (388)
56 KOG3855 Monooxygenase involved 99.9 2.1E-24 4.5E-29 194.9 17.4 354 5-386 35-451 (481)
57 PLN02697 lycopene epsilon cycl 99.9 1.2E-22 2.7E-27 199.0 27.4 333 5-382 107-456 (529)
58 PLN02463 lycopene beta cyclase 99.9 2.3E-22 5E-27 194.3 23.7 295 5-347 27-332 (447)
59 PF04820 Trp_halogenase: Trypt 99.9 1.9E-22 4.2E-27 196.1 21.8 320 8-376 1-381 (454)
60 TIGR01789 lycopene_cycl lycope 99.9 4.9E-22 1.1E-26 188.9 23.9 305 8-373 1-314 (370)
61 PF05834 Lycopene_cycl: Lycope 99.8 1.9E-18 4.1E-23 165.2 24.7 282 8-345 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.8 2E-18 4.3E-23 151.9 19.7 235 160-424 2-242 (276)
63 KOG2415 Electron transfer flav 99.8 1.6E-16 3.5E-21 144.0 20.6 381 5-414 75-490 (621)
64 PRK04176 ribulose-1,5-biphosph 99.6 1.1E-14 2.4E-19 131.0 13.0 143 5-177 24-179 (257)
65 COG2081 Predicted flavoprotein 99.5 2.9E-14 6.2E-19 130.5 10.9 161 4-173 1-169 (408)
66 TIGR00292 thiazole biosynthesi 99.5 1.3E-13 2.8E-18 123.7 13.5 143 5-177 20-176 (254)
67 PF01946 Thi4: Thi4 family; PD 99.5 2.5E-13 5.5E-18 114.5 11.1 142 5-177 16-171 (230)
68 COG1635 THI4 Ribulose 1,5-bisp 99.4 3E-12 6.5E-17 107.2 13.8 142 6-177 30-184 (262)
69 KOG1399 Flavin-containing mono 99.3 1.2E-11 2.5E-16 118.7 13.2 144 2-171 2-153 (448)
70 PRK12266 glpD glycerol-3-phosp 99.3 3.2E-10 6.9E-15 112.8 23.5 41 1-41 1-41 (508)
71 PF03486 HI0933_like: HI0933-l 99.3 3E-12 6.5E-17 122.4 8.3 144 7-172 1-167 (409)
72 PLN02172 flavin-containing mon 99.3 1.3E-11 2.7E-16 120.6 12.0 153 5-172 9-174 (461)
73 PRK13369 glycerol-3-phosphate 99.3 5E-10 1.1E-14 111.5 22.2 41 1-41 1-41 (502)
74 TIGR01377 soxA_mon sarcosine o 99.3 1.3E-09 2.8E-14 105.0 22.5 35 7-41 1-35 (380)
75 PF00743 FMO-like: Flavin-bind 99.3 4.1E-11 8.9E-16 118.6 12.0 143 7-173 2-152 (531)
76 COG2072 TrkA Predicted flavopr 99.2 1.2E-10 2.5E-15 113.4 13.8 140 3-172 5-145 (443)
77 PRK11259 solA N-methyltryptoph 99.2 2.5E-09 5.3E-14 103.0 22.8 37 5-41 2-38 (376)
78 PF13738 Pyr_redox_3: Pyridine 99.2 4.2E-11 9.2E-16 104.7 7.9 138 10-174 1-141 (203)
79 PF01266 DAO: FAD dependent ox 99.2 2.2E-10 4.9E-15 109.2 13.3 59 107-173 144-205 (358)
80 PRK12409 D-amino acid dehydrog 99.2 5.6E-09 1.2E-13 101.7 22.8 35 7-41 2-36 (410)
81 COG0579 Predicted dehydrogenas 99.2 2.7E-10 5.9E-15 108.0 12.5 169 4-177 1-218 (429)
82 PRK01747 mnmC bifunctional tRN 99.2 8.6E-09 1.9E-13 106.2 24.3 36 7-42 261-296 (662)
83 PRK05192 tRNA uridine 5-carbox 99.1 1.2E-09 2.6E-14 108.0 14.7 149 4-171 2-157 (618)
84 PF12831 FAD_oxidored: FAD dep 99.1 5.6E-11 1.2E-15 115.8 5.0 149 8-174 1-153 (428)
85 TIGR01373 soxB sarcosine oxida 99.1 2.5E-08 5.5E-13 97.0 23.0 36 5-40 29-66 (407)
86 COG0578 GlpA Glycerol-3-phosph 99.1 1.3E-08 2.7E-13 98.8 19.8 172 2-177 8-232 (532)
87 PLN02661 Putative thiazole syn 99.1 1.8E-09 4E-14 99.6 13.4 140 4-175 90-248 (357)
88 TIGR01813 flavo_cyto_c flavocy 99.1 2.5E-09 5.4E-14 105.0 15.0 162 8-172 1-193 (439)
89 PRK07804 L-aspartate oxidase; 99.1 2.5E-09 5.5E-14 107.2 14.7 167 5-175 15-214 (541)
90 PLN02464 glycerol-3-phosphate 99.1 7.5E-08 1.6E-12 98.0 25.4 70 108-177 230-303 (627)
91 PRK07573 sdhA succinate dehydr 99.0 3.4E-09 7.3E-14 108.0 14.9 38 5-42 34-71 (640)
92 PRK00711 D-amino acid dehydrog 99.0 3.7E-08 8E-13 96.2 21.6 35 7-41 1-35 (416)
93 PRK08275 putative oxidoreducta 99.0 3.1E-09 6.7E-14 107.0 14.1 165 5-173 8-202 (554)
94 TIGR01812 sdhA_frdA_Gneg succi 99.0 3.9E-09 8.4E-14 106.9 14.8 64 111-175 130-195 (566)
95 PRK11101 glpA sn-glycerol-3-ph 99.0 3.4E-09 7.3E-14 106.4 14.1 39 2-40 2-40 (546)
96 PF00890 FAD_binding_2: FAD bi 99.0 2.1E-09 4.6E-14 104.9 12.3 62 110-172 141-204 (417)
97 PRK06452 sdhA succinate dehydr 99.0 5.4E-09 1.2E-13 105.3 15.4 165 4-173 3-200 (566)
98 PRK06854 adenylylsulfate reduc 99.0 5.3E-09 1.1E-13 106.1 15.1 155 6-172 11-196 (608)
99 PRK06069 sdhA succinate dehydr 99.0 5.6E-09 1.2E-13 105.7 15.3 163 5-175 4-204 (577)
100 PRK08274 tricarballylate dehyd 99.0 3.3E-09 7.2E-14 105.0 13.2 36 5-40 3-38 (466)
101 PRK05945 sdhA succinate dehydr 99.0 5.2E-09 1.1E-13 105.8 14.8 62 111-173 136-199 (575)
102 PRK08641 sdhA succinate dehydr 99.0 9.2E-09 2E-13 104.1 16.4 39 4-42 1-39 (589)
103 PLN00128 Succinate dehydrogena 99.0 6.1E-09 1.3E-13 105.8 15.1 164 6-173 50-252 (635)
104 PRK11728 hydroxyglutarate oxid 99.0 2.4E-09 5.2E-14 103.6 11.7 63 107-177 146-211 (393)
105 TIGR01320 mal_quin_oxido malat 99.0 4.4E-09 9.6E-14 103.6 13.6 71 107-178 175-248 (483)
106 PRK13339 malate:quinone oxidor 99.0 5.8E-09 1.3E-13 102.1 14.1 71 106-177 180-254 (497)
107 PRK07057 sdhA succinate dehydr 99.0 9E-09 2E-13 104.2 15.7 165 5-173 11-213 (591)
108 PRK06263 sdhA succinate dehydr 99.0 8.7E-09 1.9E-13 103.6 15.3 163 5-172 6-198 (543)
109 PRK09231 fumarate reductase fl 99.0 9.7E-09 2.1E-13 103.8 15.6 165 5-174 3-199 (582)
110 PRK05257 malate:quinone oxidor 99.0 7.2E-09 1.6E-13 102.2 14.2 72 106-178 179-254 (494)
111 PRK08958 sdhA succinate dehydr 99.0 9.2E-09 2E-13 103.9 15.1 165 5-173 6-208 (588)
112 PRK06481 fumarate reductase fl 99.0 1.2E-08 2.6E-13 101.6 15.4 39 5-43 60-98 (506)
113 PRK09078 sdhA succinate dehydr 99.0 1.4E-08 2.9E-13 103.0 15.9 163 6-172 12-213 (598)
114 PRK08205 sdhA succinate dehydr 99.0 1.2E-08 2.7E-13 103.2 15.4 64 110-173 140-208 (583)
115 PTZ00139 Succinate dehydrogena 99.0 1.4E-08 3E-13 103.1 15.7 165 5-173 28-231 (617)
116 TIGR01176 fum_red_Fp fumarate 99.0 1.5E-08 3.3E-13 102.1 15.5 163 6-173 3-197 (580)
117 PRK09077 L-aspartate oxidase; 98.9 1.7E-08 3.7E-13 101.2 15.2 167 5-175 7-211 (536)
118 TIGR00275 flavoprotein, HI0933 98.9 2.8E-09 6.1E-14 102.9 9.2 150 10-171 1-160 (400)
119 PRK07121 hypothetical protein; 98.9 4.9E-09 1.1E-13 104.3 11.0 39 5-43 19-57 (492)
120 PRK08071 L-aspartate oxidase; 98.9 1.6E-08 3.4E-13 100.7 14.5 162 5-173 2-192 (510)
121 PRK07803 sdhA succinate dehydr 98.9 2.3E-08 4.9E-13 101.9 15.3 38 5-42 7-44 (626)
122 TIGR00551 nadB L-aspartate oxi 98.9 2.2E-08 4.7E-13 99.4 14.6 162 6-175 2-193 (488)
123 PLN02815 L-aspartate oxidase 98.9 2.4E-08 5.2E-13 100.6 14.5 164 5-173 28-224 (594)
124 PF01134 GIDA: Glucose inhibit 98.9 1.9E-08 4.1E-13 94.5 12.8 143 8-169 1-150 (392)
125 TIGR01292 TRX_reduct thioredox 98.9 1.9E-08 4.1E-13 93.6 12.3 33 7-39 1-33 (300)
126 COG0492 TrxB Thioredoxin reduc 98.9 2.5E-08 5.3E-13 91.7 12.6 37 4-40 1-38 (305)
127 COG3380 Predicted NAD/FAD-depe 98.9 1.4E-08 3.1E-13 88.1 10.2 142 8-167 3-156 (331)
128 TIGR00136 gidA glucose-inhibit 98.9 3.1E-08 6.7E-13 98.0 13.7 148 7-171 1-154 (617)
129 PRK05249 soluble pyridine nucl 98.9 1.7E-08 3.8E-13 99.8 12.1 41 2-42 1-41 (461)
130 TIGR01811 sdhA_Bsu succinate d 98.9 3.6E-08 7.9E-13 99.9 14.4 51 123-173 147-198 (603)
131 PRK06467 dihydrolipoamide dehy 98.9 1.7E-08 3.7E-13 99.7 11.8 38 5-42 3-40 (471)
132 PRK06175 L-aspartate oxidase; 98.9 2.3E-08 5E-13 97.5 12.4 38 5-43 3-40 (433)
133 PRK08626 fumarate reductase fl 98.9 4.3E-08 9.4E-13 100.1 14.5 41 2-42 1-41 (657)
134 PRK12416 protoporphyrinogen ox 98.8 5.6E-06 1.2E-10 82.0 28.8 60 8-67 3-80 (463)
135 PTZ00383 malate:quinone oxidor 98.8 5.7E-08 1.2E-12 95.6 14.0 38 4-41 43-82 (497)
136 PRK15317 alkyl hydroperoxide r 98.8 3E-08 6.5E-13 99.2 12.2 112 4-171 209-322 (517)
137 PRK08401 L-aspartate oxidase; 98.8 3.9E-08 8.4E-13 97.0 12.6 34 7-40 2-35 (466)
138 PRK06115 dihydrolipoamide dehy 98.8 3.3E-08 7.1E-13 97.7 11.9 38 5-42 2-39 (466)
139 TIGR03364 HpnW_proposed FAD de 98.8 3.2E-08 7E-13 94.8 11.0 35 7-41 1-35 (365)
140 PRK14694 putative mercuric red 98.8 1.1E-07 2.4E-12 94.1 14.5 39 1-39 1-39 (468)
141 TIGR03329 Phn_aa_oxid putative 98.8 3.7E-08 8E-13 97.2 11.0 36 5-40 23-60 (460)
142 PLN02612 phytoene desaturase 98.8 2.4E-06 5.3E-11 86.2 24.0 63 5-67 92-167 (567)
143 KOG2820 FAD-dependent oxidored 98.8 1.6E-06 3.4E-11 78.0 19.1 159 5-170 6-211 (399)
144 PRK12837 3-ketosteroid-delta-1 98.7 2.8E-07 6E-12 92.1 16.0 38 5-43 6-43 (513)
145 PRK12834 putative FAD-binding 98.7 1.6E-07 3.4E-12 94.7 14.4 36 5-40 3-38 (549)
146 PRK13800 putative oxidoreducta 98.7 2.4E-07 5.3E-12 98.4 16.0 36 5-40 12-47 (897)
147 PF13450 NAD_binding_8: NAD(P) 98.7 1.5E-08 3.2E-13 71.1 4.5 32 11-42 1-32 (68)
148 PRK07251 pyridine nucleotide-d 98.7 8E-08 1.7E-12 94.3 11.2 36 5-40 2-37 (438)
149 PRK07843 3-ketosteroid-delta-1 98.7 1.8E-07 3.9E-12 94.3 13.7 39 4-42 5-43 (557)
150 PRK07395 L-aspartate oxidase; 98.7 1.2E-07 2.6E-12 95.1 12.2 159 5-172 8-198 (553)
151 PRK05976 dihydrolipoamide dehy 98.7 1.2E-07 2.5E-12 94.1 11.8 34 5-38 3-36 (472)
152 PRK12835 3-ketosteroid-delta-1 98.7 2.5E-07 5.4E-12 93.6 14.3 39 5-43 10-48 (584)
153 COG1053 SdhA Succinate dehydro 98.7 1.2E-07 2.6E-12 94.3 11.7 168 3-175 3-206 (562)
154 PTZ00306 NADH-dependent fumara 98.7 4.2E-07 9.2E-12 98.8 16.9 40 4-43 407-446 (1167)
155 TIGR03140 AhpF alkyl hydropero 98.7 1.4E-07 3E-12 94.3 12.2 112 4-171 210-323 (515)
156 PRK06416 dihydrolipoamide dehy 98.7 1.3E-07 2.9E-12 93.5 11.8 35 5-39 3-37 (462)
157 TIGR02061 aprA adenosine phosp 98.7 3.9E-07 8.5E-12 92.0 14.6 50 123-172 140-192 (614)
158 TIGR01424 gluta_reduc_2 glutat 98.7 8.8E-08 1.9E-12 94.2 9.8 33 6-38 2-34 (446)
159 PRK12842 putative succinate de 98.7 5.6E-07 1.2E-11 91.2 15.7 43 1-43 4-46 (574)
160 TIGR03143 AhpF_homolog putativ 98.7 2.1E-07 4.5E-12 93.9 12.5 35 5-39 3-37 (555)
161 COG0665 DadA Glycine/D-amino a 98.7 2.9E-06 6.2E-11 82.0 19.9 38 5-42 3-40 (387)
162 PRK10262 thioredoxin reductase 98.7 2.3E-07 5E-12 87.2 11.8 38 1-38 1-38 (321)
163 PRK12839 hypothetical protein; 98.7 6.4E-07 1.4E-11 90.3 15.6 40 4-43 6-45 (572)
164 PF13434 K_oxygenase: L-lysine 98.7 8.8E-08 1.9E-12 90.0 8.8 153 6-177 2-165 (341)
165 PRK09897 hypothetical protein; 98.7 2.1E-07 4.6E-12 92.1 11.7 36 7-42 2-39 (534)
166 PRK06370 mercuric reductase; V 98.6 2.4E-07 5.2E-12 91.6 12.0 36 4-39 3-38 (463)
167 PF13454 NAD_binding_9: FAD-NA 98.6 3.9E-07 8.5E-12 75.8 11.4 31 10-40 1-36 (156)
168 PLN02507 glutathione reductase 98.6 2.9E-07 6.3E-12 91.5 12.2 33 6-38 25-57 (499)
169 TIGR02485 CobZ_N-term precorri 98.6 3E-07 6.6E-12 90.1 11.8 31 11-41 1-31 (432)
170 PF06039 Mqo: Malate:quinone o 98.6 3.7E-07 7.9E-12 86.2 11.5 66 106-172 177-245 (488)
171 TIGR01421 gluta_reduc_1 glutat 98.6 3.2E-07 7E-12 90.1 11.7 34 6-39 2-35 (450)
172 PRK07512 L-aspartate oxidase; 98.6 3.7E-07 8E-12 91.1 12.0 35 5-41 8-42 (513)
173 TIGR01350 lipoamide_DH dihydro 98.6 3.1E-07 6.7E-12 90.9 11.3 36 6-42 1-36 (461)
174 PRK06327 dihydrolipoamide dehy 98.6 4.3E-07 9.3E-12 90.0 11.4 33 5-37 3-35 (475)
175 PRK06134 putative FAD-binding 98.6 4.4E-07 9.5E-12 91.9 11.5 38 5-42 11-48 (581)
176 PF07992 Pyr_redox_2: Pyridine 98.6 1.3E-07 2.9E-12 82.3 6.8 33 8-40 1-33 (201)
177 PRK12844 3-ketosteroid-delta-1 98.6 2.1E-06 4.5E-11 86.6 15.9 38 5-42 5-42 (557)
178 PRK07818 dihydrolipoamide dehy 98.5 6.5E-07 1.4E-11 88.6 11.9 34 5-38 3-36 (466)
179 PRK06116 glutathione reductase 98.5 3.8E-07 8.2E-12 89.9 10.1 34 5-38 3-36 (450)
180 PTZ00058 glutathione reductase 98.5 5.6E-07 1.2E-11 90.1 11.0 35 4-38 46-80 (561)
181 PRK12845 3-ketosteroid-delta-1 98.5 1.9E-06 4.1E-11 86.7 14.8 38 5-43 15-52 (564)
182 PRK13748 putative mercuric red 98.5 5.1E-07 1.1E-11 91.6 10.9 34 5-38 97-130 (561)
183 PRK05335 tRNA (uracil-5-)-meth 98.5 2.9E-07 6.3E-12 87.4 8.4 116 7-135 3-126 (436)
184 COG0029 NadB Aspartate oxidase 98.5 6.4E-07 1.4E-11 84.8 10.3 160 8-176 9-201 (518)
185 KOG2853 Possible oxidoreductas 98.5 1.8E-05 4E-10 71.2 18.6 41 5-45 85-129 (509)
186 PRK14727 putative mercuric red 98.5 6.2E-07 1.3E-11 89.0 10.1 38 5-42 15-52 (479)
187 COG1233 Phytoene dehydrogenase 98.5 1.3E-07 2.7E-12 93.8 5.1 40 4-43 1-40 (487)
188 PF00070 Pyr_redox: Pyridine n 98.5 1.9E-06 4.1E-11 62.8 9.4 35 8-42 1-35 (80)
189 PRK12843 putative FAD-binding 98.4 3.7E-06 8.1E-11 85.2 14.6 39 5-43 15-53 (578)
190 PRK12779 putative bifunctional 98.4 5.5E-07 1.2E-11 95.3 8.8 36 6-41 306-341 (944)
191 TIGR01438 TGR thioredoxin and 98.4 2.5E-06 5.5E-11 84.5 12.1 33 6-38 2-34 (484)
192 KOG2404 Fumarate reductase, fl 98.4 3.3E-06 7.2E-11 75.3 11.4 167 7-178 10-213 (477)
193 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 1.4E-06 2.9E-11 83.5 9.6 35 7-41 1-35 (433)
194 KOG0029 Amine oxidase [Seconda 98.4 3.6E-07 7.8E-12 89.7 5.5 41 3-43 12-52 (501)
195 PTZ00052 thioredoxin reductase 98.4 5.2E-07 1.1E-11 89.7 6.6 33 6-38 5-37 (499)
196 COG1249 Lpd Pyruvate/2-oxoglut 98.4 3.4E-06 7.3E-11 81.8 11.9 38 5-42 3-40 (454)
197 PRK06912 acoL dihydrolipoamide 98.4 3.7E-06 8E-11 83.0 12.5 33 8-40 2-34 (458)
198 PRK09853 putative selenate red 98.4 1.7E-06 3.6E-11 90.7 9.6 36 6-41 539-574 (1019)
199 PRK07845 flavoprotein disulfid 98.4 4.9E-06 1.1E-10 82.3 12.5 32 8-39 3-34 (466)
200 KOG1335 Dihydrolipoamide dehyd 98.4 9.3E-06 2E-10 74.3 13.0 52 122-174 265-317 (506)
201 PRK07208 hypothetical protein; 98.3 5.6E-07 1.2E-11 89.5 5.7 39 5-43 3-41 (479)
202 PRK09754 phenylpropionate diox 98.3 5.7E-06 1.2E-10 80.1 11.8 38 5-42 2-41 (396)
203 TIGR01423 trypano_reduc trypan 98.3 7.2E-06 1.6E-10 81.1 12.6 34 5-38 2-36 (486)
204 KOG2665 Predicted FAD-dependen 98.3 1.4E-06 3.1E-11 77.4 6.7 57 4-60 46-110 (453)
205 PRK13512 coenzyme A disulfide 98.3 7.1E-06 1.5E-10 80.5 11.8 35 8-42 3-39 (438)
206 PRK09564 coenzyme A disulfide 98.3 4.7E-06 1E-10 82.1 9.9 34 8-41 2-37 (444)
207 COG4529 Uncharacterized protei 98.2 6.9E-06 1.5E-10 78.0 10.2 155 7-176 2-169 (474)
208 PRK08010 pyridine nucleotide-d 98.2 1.1E-06 2.3E-11 86.5 5.1 36 5-40 2-37 (441)
209 PLN02546 glutathione reductase 98.2 6.8E-06 1.5E-10 82.4 10.8 32 6-37 79-110 (558)
210 KOG0042 Glycerol-3-phosphate d 98.2 4.1E-06 8.8E-11 79.8 7.5 60 118-177 233-294 (680)
211 PTZ00153 lipoamide dehydrogena 98.2 1E-05 2.2E-10 82.4 10.5 34 6-39 116-149 (659)
212 PRK11883 protoporphyrinogen ox 98.2 2E-06 4.2E-11 85.0 5.1 60 7-66 1-74 (451)
213 PRK07233 hypothetical protein; 98.2 2E-06 4.3E-11 84.5 5.1 59 8-66 1-71 (434)
214 TIGR02733 desat_CrtD C-3',4' d 98.2 2.1E-06 4.7E-11 85.6 5.3 37 7-43 2-38 (492)
215 COG3349 Uncharacterized conser 98.2 2.1E-06 4.5E-11 82.3 4.8 37 7-43 1-37 (485)
216 TIGR02730 carot_isom carotene 98.1 2.3E-06 5.1E-11 85.3 5.2 37 7-43 1-37 (493)
217 KOG2844 Dimethylglycine dehydr 98.1 0.00015 3.3E-09 71.1 17.1 60 107-173 184-245 (856)
218 TIGR02731 phytoene_desat phyto 98.1 4.9E-06 1.1E-10 82.2 7.4 60 8-67 1-73 (453)
219 PLN02568 polyamine oxidase 98.1 3E-06 6.6E-11 84.6 5.6 42 1-43 1-47 (539)
220 PLN02576 protoporphyrinogen ox 98.1 2.8E-06 6E-11 85.0 5.4 39 5-43 11-50 (496)
221 TIGR00031 UDP-GALP_mutase UDP- 98.1 3.3E-06 7.2E-11 80.1 5.2 37 7-43 2-38 (377)
222 PLN02268 probable polyamine ox 98.1 3E-06 6.5E-11 83.3 5.1 37 7-43 1-37 (435)
223 PRK06292 dihydrolipoamide dehy 98.1 2.9E-06 6.3E-11 83.9 5.1 34 4-37 1-34 (460)
224 TIGR00562 proto_IX_ox protopor 98.1 3.5E-06 7.6E-11 83.5 5.2 61 6-66 2-78 (462)
225 PRK04965 NADH:flavorubredoxin 98.1 2.1E-05 4.6E-10 75.6 10.5 98 7-172 142-240 (377)
226 TIGR03315 Se_ygfK putative sel 98.1 4.1E-06 8.8E-11 88.3 5.7 37 6-42 537-573 (1012)
227 TIGR02734 crtI_fam phytoene de 98.1 3.5E-06 7.6E-11 84.3 4.5 35 9-43 1-35 (502)
228 PRK06115 dihydrolipoamide dehy 98.1 5.1E-05 1.1E-09 75.1 12.5 105 6-174 174-279 (466)
229 PRK05976 dihydrolipoamide dehy 98.1 4.9E-05 1.1E-09 75.4 12.4 102 7-174 181-284 (472)
230 COG3075 GlpB Anaerobic glycero 98.0 5.6E-06 1.2E-10 74.2 4.9 50 6-64 2-51 (421)
231 TIGR01350 lipoamide_DH dihydro 98.0 4.1E-05 8.8E-10 75.9 11.6 103 6-175 170-273 (461)
232 COG0562 Glf UDP-galactopyranos 98.0 7.9E-06 1.7E-10 73.1 5.1 37 7-43 2-38 (374)
233 PTZ00188 adrenodoxin reductase 98.0 8.5E-06 1.8E-10 78.9 5.7 39 5-43 38-77 (506)
234 PTZ00363 rab-GDP dissociation 98.0 6.5E-06 1.4E-10 80.0 4.9 39 5-43 3-41 (443)
235 PRK12831 putative oxidoreducta 98.0 7.7E-06 1.7E-10 80.6 5.5 38 5-42 139-176 (464)
236 PLN02852 ferredoxin-NADP+ redu 98.0 7.4E-06 1.6E-10 80.4 5.3 39 5-43 25-65 (491)
237 COG1231 Monoamine oxidase [Ami 98.0 8.7E-06 1.9E-10 76.7 5.3 41 4-44 5-45 (450)
238 PRK09754 phenylpropionate diox 98.0 5.4E-05 1.2E-09 73.3 11.0 97 7-173 145-243 (396)
239 TIGR03452 mycothione_red mycot 98.0 2.8E-05 6.1E-10 76.5 9.1 33 5-39 1-33 (452)
240 PTZ00318 NADH dehydrogenase-li 98.0 4.8E-05 1E-09 74.3 10.7 38 4-41 8-45 (424)
241 PLN02676 polyamine oxidase 98.0 9.2E-06 2E-10 80.5 5.6 40 4-43 24-64 (487)
242 PRK06912 acoL dihydrolipoamide 98.0 6.7E-05 1.5E-09 74.1 11.6 100 7-174 171-271 (458)
243 TIGR02053 MerA mercuric reduct 98.0 7.4E-06 1.6E-10 81.1 4.9 33 7-39 1-33 (463)
244 COG1232 HemY Protoporphyrinoge 98.0 8.4E-06 1.8E-10 78.4 4.9 59 8-66 2-74 (444)
245 PRK07846 mycothione reductase; 98.0 5.7E-05 1.2E-09 74.4 10.7 32 6-39 1-32 (451)
246 PRK07818 dihydrolipoamide dehy 97.9 8.9E-05 1.9E-09 73.5 12.1 103 7-174 173-276 (466)
247 PLN02487 zeta-carotene desatur 97.9 1.9E-05 4E-10 79.2 7.1 61 7-67 76-149 (569)
248 PRK12775 putative trifunctiona 97.9 1.7E-05 3.6E-10 85.0 7.1 37 6-42 430-466 (1006)
249 PRK05249 soluble pyridine nucl 97.9 8.1E-05 1.8E-09 73.7 11.2 101 6-175 175-276 (461)
250 COG1148 HdrA Heterodisulfide r 97.9 1.2E-05 2.5E-10 75.9 4.8 37 7-43 125-161 (622)
251 TIGR01316 gltA glutamate synth 97.9 1.4E-05 3E-10 78.6 5.7 38 5-42 132-169 (449)
252 PRK06567 putative bifunctional 97.9 1.1E-05 2.5E-10 83.7 5.1 35 5-39 382-416 (1028)
253 PRK07846 mycothione reductase; 97.9 0.00011 2.4E-09 72.3 11.8 99 6-174 166-265 (451)
254 COG1249 Lpd Pyruvate/2-oxoglut 97.9 0.00013 2.8E-09 70.9 11.7 103 6-176 173-277 (454)
255 COG3634 AhpF Alkyl hydroperoxi 97.9 3.3E-05 7.2E-10 69.8 7.0 32 4-35 209-240 (520)
256 PRK12769 putative oxidoreducta 97.9 1.4E-05 3.1E-10 82.3 5.4 38 5-42 326-363 (654)
257 COG0445 GidA Flavin-dependent 97.9 2.1E-05 4.6E-10 75.5 6.0 149 5-170 3-157 (621)
258 PRK12810 gltD glutamate syntha 97.9 1.8E-05 3.8E-10 78.4 5.8 38 5-42 142-179 (471)
259 COG2907 Predicted NAD/FAD-bind 97.9 2.4E-05 5.2E-10 70.8 5.7 62 5-67 7-85 (447)
260 TIGR03169 Nterm_to_SelD pyridi 97.9 5.4E-05 1.2E-09 72.5 8.6 34 8-41 1-37 (364)
261 PRK14989 nitrite reductase sub 97.9 6.2E-05 1.3E-09 79.2 9.4 36 7-42 4-43 (847)
262 PRK06416 dihydrolipoamide dehy 97.9 0.00011 2.3E-09 72.8 10.8 102 7-174 173-275 (462)
263 PRK06327 dihydrolipoamide dehy 97.9 0.00014 3.1E-09 72.1 11.6 103 7-174 184-287 (475)
264 TIGR02732 zeta_caro_desat caro 97.8 1.7E-05 3.8E-10 78.4 5.0 59 8-66 1-72 (474)
265 TIGR02053 MerA mercuric reduct 97.8 0.00016 3.5E-09 71.6 11.8 102 7-174 167-269 (463)
266 PLN02529 lysine-specific histo 97.8 2.1E-05 4.5E-10 80.7 5.4 39 5-43 159-197 (738)
267 PF00732 GMC_oxred_N: GMC oxid 97.8 1.5E-05 3.3E-10 74.0 4.0 36 7-42 1-37 (296)
268 PRK13977 myosin-cross-reactive 97.8 2.7E-05 5.8E-10 76.9 5.7 39 5-43 21-63 (576)
269 PRK12778 putative bifunctional 97.8 2.3E-05 5E-10 82.2 5.5 38 5-42 430-467 (752)
270 PRK06467 dihydrolipoamide dehy 97.8 0.00022 4.8E-09 70.7 12.2 102 7-174 175-277 (471)
271 PRK06370 mercuric reductase; V 97.8 0.00021 4.7E-09 70.7 12.0 102 7-174 172-274 (463)
272 PLN02328 lysine-specific histo 97.8 2.6E-05 5.6E-10 80.5 5.6 39 5-43 237-275 (808)
273 COG0493 GltD NADPH-dependent g 97.8 2.3E-05 5E-10 76.1 4.9 38 6-43 123-160 (457)
274 PF13434 K_oxygenase: L-lysine 97.8 0.00021 4.5E-09 67.4 11.1 141 5-169 189-339 (341)
275 PRK06292 dihydrolipoamide dehy 97.8 0.00027 5.8E-09 70.0 12.3 102 6-174 169-271 (460)
276 PRK07251 pyridine nucleotide-d 97.8 0.00017 3.7E-09 70.9 10.8 99 6-174 157-256 (438)
277 TIGR01372 soxA sarcosine oxida 97.8 2.5E-05 5.5E-10 84.0 5.3 37 6-42 163-199 (985)
278 PRK02106 choline dehydrogenase 97.8 2.8E-05 6.1E-10 78.8 5.3 39 1-40 1-40 (560)
279 PRK04965 NADH:flavorubredoxin 97.8 0.00014 3E-09 70.0 9.8 35 7-41 3-39 (377)
280 KOG2960 Protein involved in th 97.8 6E-05 1.3E-09 63.4 6.1 40 6-45 76-117 (328)
281 PRK11749 dihydropyrimidine deh 97.8 3.5E-05 7.7E-10 76.1 5.6 38 5-42 139-176 (457)
282 PRK12814 putative NADPH-depend 97.8 3.7E-05 8E-10 79.1 5.8 38 5-42 192-229 (652)
283 PRK05329 anaerobic glycerol-3- 97.8 3.2E-05 7E-10 74.7 5.1 34 6-39 2-35 (422)
284 TIGR02462 pyranose_ox pyranose 97.7 3.2E-05 6.8E-10 76.8 4.9 56 123-178 228-286 (544)
285 TIGR03452 mycothione_red mycot 97.7 0.00028 6.1E-09 69.5 11.5 97 7-173 170-267 (452)
286 PRK06116 glutathione reductase 97.7 0.00023 5E-09 70.2 10.9 101 6-174 167-268 (450)
287 COG3573 Predicted oxidoreducta 97.7 4.7E-05 1E-09 68.6 4.9 39 4-42 3-41 (552)
288 TIGR01318 gltD_gamma_fam gluta 97.7 5.1E-05 1.1E-09 74.9 5.6 38 5-42 140-177 (467)
289 COG3486 IucD Lysine/ornithine 97.7 0.00021 4.6E-09 66.4 9.1 156 4-177 3-163 (436)
290 COG2509 Uncharacterized FAD-de 97.7 0.00047 1E-08 65.1 11.3 54 112-171 175-230 (486)
291 TIGR03378 glycerol3P_GlpB glyc 97.7 5.2E-05 1.1E-09 72.4 5.1 50 7-65 1-50 (419)
292 PRK14989 nitrite reductase sub 97.7 0.00027 5.8E-09 74.5 10.7 101 7-173 146-247 (847)
293 PRK07845 flavoprotein disulfid 97.7 0.00037 8.1E-09 69.0 11.2 99 7-174 178-277 (466)
294 PLN02507 glutathione reductase 97.7 0.00036 7.8E-09 69.6 11.0 99 7-174 204-303 (499)
295 PRK12809 putative oxidoreducta 97.7 5.7E-05 1.2E-09 77.6 5.4 37 6-42 310-346 (639)
296 TIGR01421 gluta_reduc_1 glutat 97.6 0.00044 9.5E-09 68.1 11.4 101 7-174 167-268 (450)
297 TIGR01424 gluta_reduc_2 glutat 97.6 0.00039 8.5E-09 68.5 10.9 99 7-174 167-266 (446)
298 TIGR02374 nitri_red_nirB nitri 97.6 0.00014 3.1E-09 76.3 8.3 34 9-42 1-37 (785)
299 KOG0685 Flavin-containing amin 97.6 7.1E-05 1.5E-09 70.8 5.0 39 5-43 20-59 (498)
300 TIGR02374 nitri_red_nirB nitri 97.6 0.00038 8.3E-09 73.2 10.9 98 7-172 141-239 (785)
301 PRK12771 putative glutamate sy 97.6 9.8E-05 2.1E-09 74.9 5.5 37 6-42 137-173 (564)
302 PRK12770 putative glutamate sy 97.6 0.00012 2.6E-09 69.7 5.7 38 5-42 17-54 (352)
303 PRK08010 pyridine nucleotide-d 97.5 0.00072 1.6E-08 66.5 11.3 97 7-174 159-257 (441)
304 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.00065 1.4E-08 66.6 10.9 35 6-40 137-171 (427)
305 PTZ00153 lipoamide dehydrogena 97.5 0.0012 2.6E-08 67.5 12.7 35 7-41 313-347 (659)
306 PRK14694 putative mercuric red 97.5 0.00079 1.7E-08 66.8 11.2 32 7-38 179-210 (468)
307 KOG2852 Possible oxidoreductas 97.5 0.0088 1.9E-07 53.2 16.0 39 5-43 9-53 (380)
308 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00013 2.8E-09 72.4 5.5 37 6-42 143-179 (485)
309 KOG4716 Thioredoxin reductase 97.5 0.0028 6E-08 57.5 13.0 38 5-42 18-55 (503)
310 TIGR01292 TRX_reduct thioredox 97.5 0.0018 4E-08 60.0 12.6 99 6-173 141-240 (300)
311 PLN03000 amine oxidase 97.5 0.00014 3E-09 75.4 5.3 39 5-43 183-221 (881)
312 PRK13512 coenzyme A disulfide 97.5 0.00088 1.9E-08 65.8 10.7 35 7-41 149-183 (438)
313 TIGR03140 AhpF alkyl hydropero 97.5 0.0014 3.1E-08 65.7 12.4 97 7-172 353-451 (515)
314 KOG1276 Protoporphyrinogen oxi 97.4 0.00015 3.2E-09 67.7 4.6 39 5-43 10-50 (491)
315 PRK09564 coenzyme A disulfide 97.4 0.00097 2.1E-08 65.7 10.8 35 6-40 149-183 (444)
316 PTZ00052 thioredoxin reductase 97.4 0.0011 2.3E-08 66.3 10.9 98 7-174 183-281 (499)
317 TIGR01438 TGR thioredoxin and 97.4 0.0012 2.5E-08 65.7 11.1 32 7-38 181-212 (484)
318 PRK14727 putative mercuric red 97.4 0.0012 2.7E-08 65.5 10.9 97 7-174 189-286 (479)
319 TIGR01423 trypano_reduc trypan 97.4 0.0014 2.9E-08 65.1 10.9 101 6-174 187-291 (486)
320 COG1252 Ndh NADH dehydrogenase 97.4 0.0015 3.2E-08 62.2 10.6 37 5-41 2-40 (405)
321 KOG0399 Glutamate synthase [Am 97.4 0.00016 3.5E-09 74.6 4.2 38 6-43 1785-1822(2142)
322 PLN02976 amine oxidase 97.4 0.00022 4.8E-09 76.7 5.3 39 5-43 692-730 (1713)
323 PTZ00058 glutathione reductase 97.4 0.0017 3.7E-08 65.4 11.3 102 6-174 237-339 (561)
324 PRK15317 alkyl hydroperoxide r 97.4 0.0028 6.1E-08 63.7 12.9 98 7-173 352-451 (517)
325 PRK13984 putative oxidoreducta 97.3 0.00026 5.7E-09 72.5 5.5 38 5-42 282-319 (604)
326 KOG3851 Sulfide:quinone oxidor 97.3 0.00025 5.3E-09 63.6 4.4 37 5-41 38-76 (446)
327 PRK13748 putative mercuric red 97.3 0.0016 3.5E-08 66.2 10.7 32 7-38 271-302 (561)
328 KOG3923 D-aspartate oxidase [A 97.3 0.00066 1.4E-08 60.4 6.7 39 5-43 2-47 (342)
329 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00031 6.7E-09 64.6 4.7 39 5-43 19-59 (468)
330 COG0446 HcaD Uncharacterized N 97.3 0.0019 4E-08 62.9 10.2 36 7-42 137-172 (415)
331 TIGR01810 betA choline dehydro 97.2 0.00029 6.3E-09 71.0 4.0 33 8-40 1-34 (532)
332 COG2303 BetA Choline dehydroge 97.2 0.00035 7.5E-09 70.2 4.4 37 4-40 5-41 (542)
333 PRK10262 thioredoxin reductase 97.2 0.0073 1.6E-07 56.7 13.1 35 6-40 146-180 (321)
334 PLN02785 Protein HOTHEAD 97.1 0.00048 1E-08 69.7 4.9 36 5-41 54-89 (587)
335 COG1206 Gid NAD(FAD)-utilizing 97.1 0.00047 1E-08 62.2 3.8 36 6-41 3-38 (439)
336 PTZ00318 NADH dehydrogenase-li 97.1 0.0041 8.9E-08 60.8 10.8 34 8-41 175-222 (424)
337 PLN02546 glutathione reductase 97.1 0.0044 9.6E-08 62.4 10.9 101 6-174 252-353 (558)
338 PRK12770 putative glutamate sy 97.0 0.0074 1.6E-07 57.5 11.7 34 7-40 173-207 (352)
339 KOG2311 NAD/FAD-utilizing prot 97.0 0.0038 8.3E-08 59.3 9.2 36 5-40 27-62 (679)
340 PRK12831 putative oxidoreducta 97.0 0.0046 9.9E-08 61.1 10.3 34 7-40 282-315 (464)
341 KOG0404 Thioredoxin reductase 97.0 0.0039 8.5E-08 53.2 8.1 34 7-40 9-42 (322)
342 KOG1336 Monodehydroascorbate/f 97.0 0.0048 1E-07 58.8 9.4 102 6-174 213-316 (478)
343 KOG0405 Pyridine nucleotide-di 96.9 0.0057 1.2E-07 55.9 9.1 38 4-41 18-55 (478)
344 TIGR01316 gltA glutamate synth 96.9 0.0064 1.4E-07 59.9 10.4 34 7-40 273-306 (449)
345 PF06100 Strep_67kDa_ant: Stre 96.9 0.025 5.4E-07 54.8 13.8 38 6-43 2-43 (500)
346 COG1252 Ndh NADH dehydrogenase 96.7 0.0057 1.2E-07 58.3 8.0 46 122-177 222-269 (405)
347 PRK05675 sdhA succinate dehydr 96.7 0.02 4.3E-07 58.2 11.8 64 110-173 126-191 (570)
348 KOG4254 Phytoene desaturase [C 96.6 0.0018 3.8E-08 61.1 3.6 40 4-43 12-51 (561)
349 TIGR03143 AhpF_homolog putativ 96.6 0.035 7.7E-07 56.3 12.8 35 6-40 143-177 (555)
350 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0035 7.5E-08 52.1 4.2 32 8-39 1-32 (157)
351 PRK11749 dihydropyrimidine deh 96.3 0.048 1E-06 54.0 12.1 35 6-40 273-308 (457)
352 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0053 1.1E-07 52.2 4.5 33 8-40 1-33 (180)
353 PRK06249 2-dehydropantoate 2-r 96.3 0.0058 1.3E-07 57.1 5.2 38 2-39 1-38 (313)
354 PF03721 UDPG_MGDP_dh_N: UDP-g 96.3 0.0034 7.4E-08 53.6 3.2 34 7-40 1-34 (185)
355 PRK12778 putative bifunctional 96.3 0.025 5.4E-07 59.6 10.2 34 7-40 571-605 (752)
356 COG0569 TrkA K+ transport syst 96.3 0.0053 1.1E-07 54.3 4.3 61 7-67 1-65 (225)
357 PRK02705 murD UDP-N-acetylmura 96.3 0.005 1.1E-07 61.0 4.6 34 8-41 2-35 (459)
358 PRK12779 putative bifunctional 96.2 0.036 7.8E-07 59.5 11.0 34 7-40 448-481 (944)
359 PRK00066 ldh L-lactate dehydro 96.2 0.0083 1.8E-07 55.9 5.5 40 1-40 1-42 (315)
360 PRK06719 precorrin-2 dehydroge 96.2 0.0098 2.1E-07 49.2 5.3 32 5-36 12-43 (157)
361 PRK12814 putative NADPH-depend 96.2 0.03 6.4E-07 57.9 9.8 34 7-40 324-358 (652)
362 TIGR02352 thiamin_ThiO glycine 96.1 0.18 3.8E-06 47.5 14.3 59 107-173 134-195 (337)
363 KOG1238 Glucose dehydrogenase/ 96.1 0.0058 1.3E-07 60.6 4.0 37 5-41 56-93 (623)
364 PRK01438 murD UDP-N-acetylmura 96.1 0.0082 1.8E-07 59.8 5.2 35 6-40 16-50 (480)
365 TIGR03377 glycerol3P_GlpA glyc 96.1 0.027 5.8E-07 56.7 8.8 70 107-177 125-197 (516)
366 PRK07530 3-hydroxybutyryl-CoA 96.0 0.007 1.5E-07 56.0 4.1 34 7-40 5-38 (292)
367 PRK07819 3-hydroxybutyryl-CoA 96.0 0.0074 1.6E-07 55.5 4.2 35 7-41 6-40 (286)
368 PRK14106 murD UDP-N-acetylmura 96.0 0.0097 2.1E-07 58.8 5.3 37 3-39 2-38 (450)
369 TIGR03169 Nterm_to_SelD pyridi 96.0 0.054 1.2E-06 51.8 10.2 40 122-172 204-244 (364)
370 PRK12769 putative oxidoreducta 95.9 0.054 1.2E-06 56.1 10.1 34 7-40 469-503 (654)
371 TIGR01318 gltD_gamma_fam gluta 95.8 0.062 1.4E-06 53.2 10.1 34 7-40 283-317 (467)
372 TIGR03862 flavo_PP4765 unchara 95.8 0.027 5.9E-07 53.6 7.1 55 109-171 85-141 (376)
373 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.012 2.5E-07 55.0 4.2 33 8-40 4-36 (308)
374 TIGR01372 soxA sarcosine oxida 95.7 0.038 8.1E-07 60.0 8.5 33 7-39 318-351 (985)
375 PRK07066 3-hydroxybutyryl-CoA 95.7 0.017 3.6E-07 53.8 5.0 34 7-40 8-41 (321)
376 TIGR03197 MnmC_Cterm tRNA U-34 95.7 0.58 1.3E-05 45.0 15.9 59 107-172 132-191 (381)
377 PF02558 ApbA: Ketopantoate re 95.7 0.015 3.3E-07 47.8 4.3 31 9-39 1-31 (151)
378 PRK12810 gltD glutamate syntha 95.7 0.12 2.5E-06 51.4 11.3 33 7-39 282-315 (471)
379 TIGR01470 cysG_Nterm siroheme 95.6 0.017 3.6E-07 50.2 4.6 36 4-39 7-42 (205)
380 PRK08293 3-hydroxybutyryl-CoA 95.6 0.016 3.4E-07 53.5 4.7 34 7-40 4-37 (287)
381 PTZ00082 L-lactate dehydrogena 95.5 0.024 5.1E-07 53.0 5.5 41 1-41 1-42 (321)
382 KOG1336 Monodehydroascorbate/f 95.5 0.043 9.2E-07 52.6 7.0 43 122-174 140-183 (478)
383 PF00996 GDI: GDP dissociation 95.4 0.021 4.6E-07 55.2 5.0 39 5-43 3-41 (438)
384 PF13241 NAD_binding_7: Putati 95.4 0.009 2E-07 45.6 2.0 37 3-39 4-40 (103)
385 KOG2495 NADH-dehydrogenase (ub 95.4 0.068 1.5E-06 50.5 7.9 42 122-170 286-328 (491)
386 PLN02545 3-hydroxybutyryl-CoA 95.4 0.02 4.3E-07 53.1 4.5 38 1-40 1-38 (295)
387 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.017 3.7E-07 56.1 4.2 34 7-40 4-37 (415)
388 TIGR03315 Se_ygfK putative sel 95.4 0.13 2.7E-06 55.3 10.7 35 6-40 666-702 (1012)
389 PRK05708 2-dehydropantoate 2-r 95.3 0.024 5.2E-07 52.7 4.8 34 6-39 2-35 (305)
390 PF01262 AlaDh_PNT_C: Alanine 95.3 0.027 6E-07 47.3 4.7 36 5-40 19-54 (168)
391 PRK06718 precorrin-2 dehydroge 95.2 0.026 5.6E-07 48.9 4.3 34 4-37 8-41 (202)
392 PF00743 FMO-like: Flavin-bind 95.2 0.081 1.8E-06 53.1 8.3 35 6-40 183-217 (531)
393 PRK09260 3-hydroxybutyryl-CoA 95.2 0.023 5E-07 52.4 4.2 33 8-40 3-35 (288)
394 PRK06522 2-dehydropantoate 2-r 95.2 0.024 5.2E-07 52.7 4.3 32 8-39 2-33 (304)
395 PRK05808 3-hydroxybutyryl-CoA 95.1 0.027 5.9E-07 51.8 4.5 34 7-40 4-37 (282)
396 PRK06035 3-hydroxyacyl-CoA deh 95.1 0.027 5.9E-07 52.0 4.5 34 7-40 4-37 (291)
397 PRK12921 2-dehydropantoate 2-r 95.1 0.028 6E-07 52.3 4.6 30 8-37 2-31 (305)
398 COG1004 Ugd Predicted UDP-gluc 95.0 0.027 5.9E-07 52.8 4.1 34 7-40 1-34 (414)
399 PRK06130 3-hydroxybutyryl-CoA 95.0 0.033 7.1E-07 52.0 4.7 34 7-40 5-38 (311)
400 PRK08229 2-dehydropantoate 2-r 95.0 0.034 7.4E-07 52.7 4.8 33 7-39 3-35 (341)
401 PRK12775 putative trifunctiona 94.9 0.18 3.9E-06 54.7 10.6 34 7-40 572-606 (1006)
402 PF13478 XdhC_C: XdhC Rossmann 94.9 0.031 6.6E-07 45.0 3.6 32 9-40 1-32 (136)
403 cd05292 LDH_2 A subgroup of L- 94.9 0.037 7.9E-07 51.5 4.6 33 8-40 2-36 (308)
404 TIGR01763 MalateDH_bact malate 94.8 0.043 9.4E-07 50.9 5.0 34 7-40 2-36 (305)
405 PRK04148 hypothetical protein; 94.8 0.03 6.6E-07 44.5 3.2 34 6-40 17-50 (134)
406 PF00056 Ldh_1_N: lactate/mala 94.7 0.055 1.2E-06 44.0 4.8 34 7-40 1-37 (141)
407 PRK08268 3-hydroxy-acyl-CoA de 94.7 0.037 7.9E-07 55.2 4.4 41 1-41 1-42 (507)
408 PRK07502 cyclohexadienyl dehyd 94.7 0.046 1E-06 50.9 4.9 40 1-40 1-42 (307)
409 PRK09424 pntA NAD(P) transhydr 94.7 0.035 7.5E-07 54.9 4.1 36 5-40 164-199 (509)
410 PRK09853 putative selenate red 94.7 0.22 4.7E-06 53.4 10.2 34 7-40 669-704 (1019)
411 COG1251 NirB NAD(P)H-nitrite r 94.6 0.094 2E-06 53.0 7.0 34 7-40 146-179 (793)
412 PRK04308 murD UDP-N-acetylmura 94.6 0.055 1.2E-06 53.3 5.5 38 4-41 3-40 (445)
413 TIGR00518 alaDH alanine dehydr 94.5 0.051 1.1E-06 51.9 4.8 36 5-40 166-201 (370)
414 PF02254 TrkA_N: TrkA-N domain 94.5 0.05 1.1E-06 42.4 4.0 32 9-40 1-32 (116)
415 TIGR03026 NDP-sugDHase nucleot 94.4 0.039 8.4E-07 53.7 3.8 33 8-40 2-34 (411)
416 PF00899 ThiF: ThiF family; I 94.4 0.054 1.2E-06 43.6 4.0 35 6-40 2-37 (135)
417 TIGR02734 crtI_fam phytoene de 94.4 2.9 6.3E-05 41.9 17.3 62 110-177 219-282 (502)
418 PRK14619 NAD(P)H-dependent gly 94.3 0.067 1.5E-06 49.9 5.1 36 5-40 3-38 (308)
419 PRK02472 murD UDP-N-acetylmura 94.3 0.067 1.4E-06 52.8 5.3 36 5-40 4-39 (447)
420 TIGR02354 thiF_fam2 thiamine b 94.3 0.073 1.6E-06 46.0 4.8 36 5-40 20-56 (200)
421 PRK14620 NAD(P)H-dependent gly 94.2 0.06 1.3E-06 50.7 4.6 32 8-39 2-33 (326)
422 PRK12809 putative oxidoreducta 94.2 0.37 8E-06 49.9 10.6 34 7-40 452-486 (639)
423 PRK14618 NAD(P)H-dependent gly 94.2 0.075 1.6E-06 50.0 5.1 34 7-40 5-38 (328)
424 cd00401 AdoHcyase S-adenosyl-L 94.2 0.06 1.3E-06 51.8 4.5 35 6-40 202-236 (413)
425 COG0771 MurD UDP-N-acetylmuram 94.1 0.064 1.4E-06 51.9 4.5 36 6-41 7-42 (448)
426 PF01593 Amino_oxidase: Flavin 94.1 0.044 9.5E-07 53.4 3.6 48 125-179 226-273 (450)
427 PF01488 Shikimate_DH: Shikima 94.1 0.11 2.3E-06 41.9 5.1 36 5-40 11-47 (135)
428 PRK07531 bifunctional 3-hydrox 94.1 0.069 1.5E-06 53.3 4.8 34 7-40 5-38 (495)
429 PRK00094 gpsA NAD(P)H-dependen 94.1 0.064 1.4E-06 50.4 4.4 33 8-40 3-35 (325)
430 PRK07417 arogenate dehydrogena 94.0 0.057 1.2E-06 49.5 3.9 33 8-40 2-34 (279)
431 PRK07326 short chain dehydroge 94.0 0.086 1.9E-06 46.8 4.8 39 1-39 1-40 (237)
432 PRK03806 murD UDP-N-acetylmura 94.0 0.088 1.9E-06 51.8 5.3 40 1-40 1-40 (438)
433 cd01080 NAD_bind_m-THF_DH_Cycl 94.0 0.1 2.2E-06 43.6 4.9 36 4-39 42-78 (168)
434 TIGR02964 xanthine_xdhC xanthi 93.8 0.091 2E-06 47.0 4.7 37 5-41 99-135 (246)
435 PRK15116 sulfur acceptor prote 93.8 0.064 1.4E-06 48.4 3.6 37 5-41 29-66 (268)
436 PRK01368 murD UDP-N-acetylmura 93.7 0.088 1.9E-06 51.9 4.8 39 1-40 1-39 (454)
437 PRK06223 malate dehydrogenase; 93.7 0.094 2E-06 48.9 4.8 34 7-40 3-37 (307)
438 PF03446 NAD_binding_2: NAD bi 93.7 0.1 2.2E-06 43.6 4.5 34 7-40 2-35 (163)
439 COG3486 IucD Lysine/ornithine 93.7 0.74 1.6E-05 43.5 10.4 52 122-174 291-343 (436)
440 COG5044 MRS6 RAB proteins gera 93.7 0.12 2.5E-06 48.0 5.0 43 1-43 1-43 (434)
441 PLN02852 ferredoxin-NADP+ redu 93.6 0.95 2.1E-05 44.9 11.7 22 7-28 167-188 (491)
442 TIGR00562 proto_IX_ox protopor 93.5 8.4 0.00018 38.1 21.3 53 111-170 226-278 (462)
443 PRK15057 UDP-glucose 6-dehydro 93.5 0.084 1.8E-06 50.8 4.0 33 8-41 2-34 (388)
444 PRK07233 hypothetical protein; 93.4 3.7 8.1E-05 40.1 15.8 55 110-171 198-254 (434)
445 PF10727 Rossmann-like: Rossma 93.4 0.051 1.1E-06 43.1 2.0 35 5-39 9-43 (127)
446 KOG2495 NADH-dehydrogenase (ub 93.4 0.61 1.3E-05 44.3 9.3 37 5-41 54-90 (491)
447 cd05293 LDH_1 A subgroup of L- 93.3 0.14 3.1E-06 47.6 5.1 36 5-40 2-39 (312)
448 TIGR01915 npdG NADPH-dependent 93.3 0.11 2.3E-06 45.8 4.2 33 8-40 2-35 (219)
449 PRK03369 murD UDP-N-acetylmura 93.3 0.11 2.4E-06 51.8 4.7 34 6-39 12-45 (488)
450 PRK08264 short chain dehydroge 93.2 0.15 3.3E-06 45.3 5.1 40 1-40 1-42 (238)
451 cd01075 NAD_bind_Leu_Phe_Val_D 93.2 0.17 3.6E-06 43.9 5.1 34 5-38 27-60 (200)
452 PRK08306 dipicolinate synthase 93.1 0.14 3.1E-06 47.3 4.8 36 5-40 151-186 (296)
453 PRK07067 sorbitol dehydrogenas 93.1 0.14 3.1E-06 46.1 4.8 40 1-40 1-41 (257)
454 PRK00683 murD UDP-N-acetylmura 93.1 0.13 2.7E-06 50.3 4.7 34 7-40 4-37 (418)
455 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.1 0.1 2.3E-06 51.9 4.1 35 7-41 6-40 (503)
456 PRK12475 thiamine/molybdopteri 93.0 0.15 3.2E-06 48.1 4.8 36 5-40 23-59 (338)
457 TIGR02356 adenyl_thiF thiazole 93.0 0.17 3.6E-06 43.9 4.9 36 5-40 20-56 (202)
458 PF01593 Amino_oxidase: Flavin 93.0 3.3 7.1E-05 40.1 14.7 28 16-43 1-28 (450)
459 TIGR00561 pntA NAD(P) transhyd 93.0 0.13 2.8E-06 50.8 4.6 35 6-40 164-198 (511)
460 PRK01710 murD UDP-N-acetylmura 93.0 0.14 3E-06 50.7 4.8 34 7-40 15-48 (458)
461 PLN02353 probable UDP-glucose 92.9 0.12 2.7E-06 50.9 4.4 35 7-41 2-38 (473)
462 PRK07774 short chain dehydroge 92.9 0.17 3.8E-06 45.3 5.1 39 1-39 1-40 (250)
463 TIGR00936 ahcY adenosylhomocys 92.9 0.13 2.9E-06 49.3 4.4 35 6-40 195-229 (406)
464 PRK04690 murD UDP-N-acetylmura 92.9 0.14 3.1E-06 50.7 4.8 35 6-40 8-42 (468)
465 cd05291 HicDH_like L-2-hydroxy 92.9 0.15 3.2E-06 47.5 4.6 34 8-41 2-37 (306)
466 COG1063 Tdh Threonine dehydrog 92.8 0.13 2.9E-06 48.8 4.3 33 8-40 171-204 (350)
467 PTZ00117 malate dehydrogenase; 92.8 0.18 3.9E-06 47.2 5.0 37 5-41 4-41 (319)
468 PRK00421 murC UDP-N-acetylmura 92.7 0.16 3.4E-06 50.4 4.8 35 6-40 7-42 (461)
469 PRK12771 putative glutamate sy 92.5 0.67 1.5E-05 47.2 9.2 35 6-40 267-302 (564)
470 PRK09496 trkA potassium transp 92.4 0.15 3.2E-06 50.4 4.3 33 8-40 2-34 (453)
471 cd01339 LDH-like_MDH L-lactate 92.4 0.16 3.5E-06 47.1 4.2 32 9-40 1-33 (300)
472 TIGR01505 tartro_sem_red 2-hyd 92.4 0.15 3.3E-06 47.0 4.0 33 8-40 1-33 (291)
473 PRK02006 murD UDP-N-acetylmura 92.3 0.19 4.1E-06 50.3 5.0 36 5-40 6-41 (498)
474 PLN02602 lactate dehydrogenase 92.3 0.24 5.3E-06 46.8 5.3 34 7-40 38-73 (350)
475 TIGR02355 moeB molybdopterin s 92.2 0.23 5E-06 44.3 4.8 37 5-41 23-60 (240)
476 PRK07688 thiamine/molybdopteri 92.2 0.22 4.7E-06 46.9 4.9 36 5-40 23-59 (339)
477 PRK05690 molybdopterin biosynt 92.2 0.23 5E-06 44.5 4.8 36 5-40 31-67 (245)
478 PRK12549 shikimate 5-dehydroge 92.1 0.23 5E-06 45.6 4.8 34 6-39 127-161 (284)
479 cd05191 NAD_bind_amino_acid_DH 92.1 0.36 7.8E-06 35.3 5.0 33 5-37 22-55 (86)
480 cd01487 E1_ThiF_like E1_ThiF_l 92.1 0.25 5.5E-06 41.7 4.7 33 8-40 1-34 (174)
481 PRK05476 S-adenosyl-L-homocyst 92.1 0.24 5.1E-06 48.0 4.9 36 5-40 211-246 (425)
482 cd05311 NAD_bind_2_malic_enz N 92.0 0.26 5.6E-06 43.6 4.9 36 5-40 24-62 (226)
483 PLN02487 zeta-carotene desatur 92.0 7.8 0.00017 39.4 15.9 37 308-347 517-553 (569)
484 COG0492 TrxB Thioredoxin reduc 92.0 3.6 7.8E-05 38.1 12.5 35 7-41 144-178 (305)
485 cd01483 E1_enzyme_family Super 92.0 0.29 6.2E-06 39.8 4.8 34 8-41 1-35 (143)
486 PRK08644 thiamine biosynthesis 92.0 0.28 6.1E-06 42.9 4.9 36 5-40 27-63 (212)
487 TIGR02853 spore_dpaA dipicolin 91.9 0.24 5.2E-06 45.5 4.7 35 6-40 151-185 (287)
488 PRK11730 fadB multifunctional 91.8 0.19 4.2E-06 52.5 4.4 34 7-40 314-347 (715)
489 PRK10669 putative cation:proto 91.8 0.16 3.5E-06 51.6 3.8 34 7-40 418-451 (558)
490 PRK11559 garR tartronate semia 91.8 0.23 4.9E-06 46.0 4.5 34 7-40 3-36 (296)
491 PRK13984 putative oxidoreducta 91.8 1 2.3E-05 46.3 9.7 30 7-36 419-454 (604)
492 TIGR02437 FadB fatty oxidation 91.8 0.2 4.3E-06 52.3 4.4 35 7-41 314-348 (714)
493 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.33 7.1E-06 41.8 5.2 34 5-38 27-61 (194)
494 COG1748 LYS9 Saccharopine dehy 91.8 0.24 5.3E-06 47.0 4.6 34 7-40 2-36 (389)
495 PRK00141 murD UDP-N-acetylmura 91.7 0.24 5.2E-06 49.2 4.7 34 6-39 15-48 (473)
496 cd05290 LDH_3 A subgroup of L- 91.6 0.27 5.9E-06 45.6 4.7 33 8-40 1-35 (307)
497 PLN02256 arogenate dehydrogena 91.6 0.29 6.3E-06 45.4 4.9 36 4-39 34-69 (304)
498 TIGR01759 MalateDH-SF1 malate 91.6 0.28 6.1E-06 45.8 4.8 36 5-40 2-45 (323)
499 cd00757 ThiF_MoeB_HesA_family 91.6 0.3 6.5E-06 43.3 4.8 36 5-40 20-56 (228)
500 TIGR00872 gnd_rel 6-phosphoglu 91.6 0.22 4.7E-06 46.2 4.0 33 8-40 2-34 (298)
No 1
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=355.37 Aligned_cols=356 Identities=29% Similarity=0.475 Sum_probs=252.8
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT 80 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (426)
|+.|+.++|+||||||+||++|+.|+++|++|+||||.+.+.. ..|.++.+.|+++++|+++|+. +.. ..+.+..
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~g~gi~l~~~~~~~l~~lg~~--~~~-~~~~~~~ 75 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD--GRGAGIVLQPELLRALAEAGVA--LPA-DIGVPSR 75 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC--CCCceeEeCHHHHHHHHHcCCC--ccc-ccccCcc
Confidence 7788899999999999999999999999999999999976432 3667899999999999999883 322 2222221
Q ss_pred eccccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324 81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG 160 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~ 160 (426)
.......+++.+.. ...+...+.+..+.+.|.+.+....++++++|++++.+ +..|+++ +++|++ ++|
T Consensus 76 ~~~~~~~~g~~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--~~a 143 (386)
T PRK07236 76 ERIYLDRDGRVVQR-----RPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD--GDRVTAR---FADGRR--ETA 143 (386)
T ss_pred ceEEEeCCCCEeec-----cCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec--CCeEEEE---ECCCCE--EEe
Confidence 11111122321111 11122235678888888887754349999999999864 3457766 567765 899
Q ss_pred cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC--
Q 014324 161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK-- 238 (426)
Q Consensus 161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 238 (426)
|+||+|||++|.+|+++.+...+.|.++..|++++......... . ........++.+++..++.||+++.
T Consensus 144 d~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (386)
T PRK07236 144 DLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEA-----R---AALRDRFTFQLGPGSHILGYPVPGEDG 215 (386)
T ss_pred CEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchh-----h---hhcccceEEEEcCCceEEEEECCCCCC
Confidence 99999999999999999877788899999999887543221110 0 0001123345577778888887642
Q ss_pred -------eeeEEEEEecCCCCc--------CCCcce-----eccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeee
Q 014324 239 -------RLNWVWYINQPEPIM--------KGNSVT-----MRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMY 298 (426)
Q Consensus 239 -------~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (426)
..+|.|+...+.... .+..+. .....+.++++.+.....|.+.+.++++.......+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (386)
T PRK07236 216 STEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPFVQAIF 295 (386)
T ss_pred CcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCchhhhhh
Confidence 356777765543110 000010 011233444444433334888899988877655544444
Q ss_pred ccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014324 299 DCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGR 378 (426)
Q Consensus 299 ~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 378 (426)
.. ..++|..+|++|+|||||.|+|+.|||+|+||+||..|+++|.... .+.+.+|+.|+++|+++++.++..++.++.
T Consensus 296 ~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~ 373 (386)
T PRK07236 296 DL-EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-GDIDAALAAWEAERLAVGAAIVARGRRLGA 373 (386)
T ss_pred cc-cCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 32 2467888999999999999999999999999999999999998753 457899999999999999999999999999
Q ss_pred hhhcC
Q 014324 379 IKQGL 383 (426)
Q Consensus 379 ~~~~~ 383 (426)
+++.+
T Consensus 374 ~~~~~ 378 (386)
T PRK07236 374 RLQAQ 378 (386)
T ss_pred HHHhc
Confidence 88776
No 2
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=356.80 Aligned_cols=379 Identities=23% Similarity=0.302 Sum_probs=255.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+||+||||||+||++|+.|+++|++|+||||.+.+. +.|.++.+.|+++++|+++|+ .+.+...+.+........
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~g~gi~l~p~~~~~L~~lgl--~~~l~~~~~~~~~~~~~~ 75 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR---PLGVGINLLPHAVRELAELGL--LDALDAIGIRTRELAYFN 75 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc---ccCcceeeCchHHHHHHHCCC--HHHHHhhCCCCcceEEEc
Confidence 489999999999999999999999999999998765 367899999999999999998 566665554322111112
Q ss_pred cccccccccc---cccCCCcchhccHHHHHHHHHhcCCC--C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324 87 TDNAKVTRTL---ARDDNFNFRAAHWADLHGLLYNALPP--E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK 159 (426)
Q Consensus 87 ~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~--~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~ 159 (426)
..+..+.... ......+.+.++|..|++.|.+.+.+ + . |+++++|++++.+++ .+.+.+.+..+|+..+++
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~~ 153 (413)
T PRK07538 76 RHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--VTVVFLGDRAGGDLVSVR 153 (413)
T ss_pred CCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--ceEEEEeccCCCccceEE
Confidence 2233211111 11122344568999999999887632 4 4 999999999986544 355554333455555699
Q ss_pred ecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC
Q 014324 160 GNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK 238 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (426)
||+||+|||.+|.+|+++.++. .+.+.+...|++.++.++... +....+.-.++..+++||+.+.
T Consensus 154 adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~~~~g~~~~~~~~~p~~~~ 219 (413)
T PRK07538 154 GDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLT--------------GRSMVMAGHLDGKLVVYPISEP 219 (413)
T ss_pred eeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccC--------------CCcEEEEcCCCCEEEEEECCCC
Confidence 9999999999999999997665 677888999998876542210 1111122123556778887653
Q ss_pred -------eeeEEEEEecCCC-CcCCCcceeccCHHHHHHHHHHHhhcccH---HHHHHhhhcCcceEeeeeccCCCCccc
Q 014324 239 -------RLNWVWYINQPEP-IMKGNSVTMRVSNDMIKNMHEEAEKVWLP---EFVKVIKETKEPFINAMYDCDPLKQIF 307 (426)
Q Consensus 239 -------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~ 307 (426)
.++|.+....+.. ......+.. ....++++. .+..|.+ .+.++++.......+++....|+++|.
T Consensus 220 ~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~w~ 295 (413)
T PRK07538 220 VDADGRQLINWVAEVRVDDAGAPRREDWNR---PGDLEDFLP-HFADWRFDWLDVPALIRAAEAIYEYPMVDRDPLPRWT 295 (413)
T ss_pred cccCCceEEEEEEEEcCCccCCCcccccCC---ccCHHHHHH-HhcCCCCCcccHHHHHhcCcceeeccccccCCCCccc
Confidence 3455554443321 001111111 122233332 2334543 255666655555566666677888999
Q ss_pred cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHh-----hhhhhc
Q 014324 308 WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRL-----GRIKQG 382 (426)
Q Consensus 308 ~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~-----~~~~~~ 382 (426)
.+|++|||||||.|+|+.|||+|+||+||..|+++|... .+.+++|+.|+++|++++..++..++.. ..++..
T Consensus 296 ~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~--~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~ 373 (413)
T PRK07538 296 RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH--GDPEAALAAYEAERRPATAQIVLANRLNGPEGVLQLVEE 373 (413)
T ss_pred CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhHHHHHHHHHhhhcChHHHHHHHHh
Confidence 999999999999999999999999999999999999875 3588999999999999999999999984 455555
Q ss_pred CCCCCCCCCCCCCCChhhhHHHhhccCCcccC
Q 014324 383 LALPDREPFNTKTASPQDCQELQQKTMPFFAD 414 (426)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
..+....... ++...+++..+.+. +.+..|
T Consensus 374 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 403 (413)
T PRK07538 374 RAPGGFADID-DVISSAELEAIAAR-YKAAAG 403 (413)
T ss_pred hCCCCccchh-hcCCHHHHHHHHHH-HHHhhC
Confidence 4322222122 24555566555543 334433
No 3
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=2.6e-45 Score=356.43 Aligned_cols=358 Identities=23% Similarity=0.272 Sum_probs=253.2
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce--eec-
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL--TID- 82 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~- 82 (426)
++|+||||||+||++|+.|+++| ++|+||||++.+. ..|.++.+.|+++++|+++|+ .+.+.+..... ...
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~---~~G~gi~l~~~~~~~L~~lg~--~~~~~~~~~~~~~~~~~ 75 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG---EVGAGVSFGANAVRAIVGLGL--GEAYTQVADSTPAPWQD 75 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC---CCccceeeCccHHHHHHHcCC--hhHHHHHhcCCCccCcc
Confidence 47999999999999999999998 6999999998765 378899999999999999998 45444333211 000
Q ss_pred -cccccccccccccc-cccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324 83 -QNQATDNAKVTRTL-ARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG 160 (426)
Q Consensus 83 -~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~ 160 (426)
...+.++....... ......+...++|..|.+.|.+.++...++++++|++++.++ ..|+++ +++|++ +++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~a 148 (414)
T TIGR03219 76 IWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQA--EEVQVL---FTDGTE--YRC 148 (414)
T ss_pred eeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecC--CcEEEE---EcCCCE--EEe
Confidence 01111111000000 001123345689999999999988765588999999998643 356666 567765 899
Q ss_pred cEEEeccCCchhhhhhhcC-----CCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 161 NLLVAADGCLSSIRQSFLS-----DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 161 d~vI~AdG~~S~vR~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
|+||+|||.+|.||+.+++ ...+.+.++..|+++++............+. +.......++.+++++++++|+
T Consensus 149 d~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ 225 (414)
T TIGR03219 149 DLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLD---EHLVDVPQMYLGLDGHILTFPV 225 (414)
T ss_pred eEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccccc---ccccccceEEEcCCCeEEEEEC
Confidence 9999999999999999864 2456788999999988654321110000000 1111122345678888889999
Q ss_pred cCCe-eeEEEEEecCCCCc----CCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccccc
Q 014324 236 LNKR-LNWVWYINQPEPIM----KGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN 310 (426)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r 310 (426)
.++. .++.++...+.... ....+. .....+++++ .+..|.+.+.++++.......+.++...++++|..||
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~w~~gr 301 (414)
T TIGR03219 226 RQGRLINVVAFISDRSQPKPTWPSDTPWV---REATQREMLD-AFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGR 301 (414)
T ss_pred CCCcEEEEEEEEcCcccccCCCCCCCccc---CccCHHHHHH-HhcCCCHHHHHHHHhCCCCCceeeeecccccceeeCc
Confidence 8776 44555543221110 001111 1122334433 4567999999998877766667776677888999999
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW--GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
++|+|||||.|+|+.|||+|+||+||..|+++|... ...+++.+|+.|+++|+++++.+++.++.++++++..
T Consensus 302 v~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 376 (414)
T TIGR03219 302 VALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR 376 (414)
T ss_pred EEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999864 2357889999999999999999999999999887653
No 4
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=6.4e-45 Score=366.59 Aligned_cols=383 Identities=15% Similarity=0.166 Sum_probs=250.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
+++||+||||||+||++|+.|++. |++|+||||++.+. ..|++++++|+++++|+++|+ .+.+.+.+.+.....
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~---~~grA~gl~prtleiL~~lGl--~d~l~~~g~~~~~~~ 105 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL---ELGQADGIACRTMEMFQAFGF--AERILKEAYWINETA 105 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC---CCCeeeEEChHHHHHHHhccc--hHHHHhhcccccceE
Confidence 468999999999999999999995 99999999998764 367889999999999999998 566655554432111
Q ss_pred cccccc---cccc---ccc---cccCCCcchhccHHHHHHHHHhcCCC-C--e-eEeeeeEEEEEEecC-CceEEEEEEe
Q 014324 84 NQATDN---AKVT---RTL---ARDDNFNFRAAHWADLHGLLYNALPP-E--I-FLRGHQYLSFCISEV-KTTVTVKAKV 149 (426)
Q Consensus 84 ~~~~~~---~~~~---~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~~~~~~~-~~~v~v~~~~ 149 (426)
.+..++ ..+. ... .....++...++|..+++.|.+.+.+ + + +++++++++++.+++ ...|++++++
T Consensus 106 ~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~ 185 (634)
T PRK08294 106 FWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRR 185 (634)
T ss_pred EEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEE
Confidence 111111 0110 000 01123345678999999999987753 3 5 789999999987543 2468887654
Q ss_pred cc---CCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCC
Q 014324 150 LQ---TDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS 226 (426)
Q Consensus 150 ~~---~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (426)
.. +|+..+++|||||||||++|.||+++....... .+...+++++.... .++|.......+...+
T Consensus 186 ~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~--~~~~~~~v~dv~~~----------~~~p~~~~~~~~~~~~ 253 (634)
T PRK08294 186 TDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGD--SANHAWGVMDVLAV----------TDFPDIRLKCAIQSAS 253 (634)
T ss_pred CCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCC--cccceEEEEEEEEc----------cCCCCcceEEEEecCC
Confidence 32 465567999999999999999999985433221 12222344443211 1234322222344466
Q ss_pred CceEEEEEecCCe-eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCC
Q 014324 227 GTHSVFYELLNKR-LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPL 303 (426)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ 303 (426)
++.++++|.+++. ++ +++................+.+.+.+........+...+. ....|..+. ....
T Consensus 254 ~g~~~~~P~~~g~~~r--~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~-------~v~w~s~y~i~~r~a 324 (634)
T PRK08294 254 EGSILLIPREGGYLVR--LYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVK-------EVAWWSVYEVGQRLT 324 (634)
T ss_pred CceEEEEECCCCeEEE--EEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCcee-------EEeEEecccccceeh
Confidence 7788889987774 33 3333221111111111222343333333322211111111 111222221 1111
Q ss_pred Cc----------cccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHH
Q 014324 304 KQ----------IFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLH 372 (426)
Q Consensus 304 ~~----------~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~ 372 (426)
++ |..+||+|+|||||+++|..|||||++|+||++|+|+|+... +...+++|++|+++|+++++.+++.
T Consensus 325 ~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~li~~ 404 (634)
T PRK08294 325 DRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQELIDF 404 (634)
T ss_pred hhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 12 235999999999999999999999999999999999998763 3567899999999999999999999
Q ss_pred HHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCccc
Q 014324 373 SRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLV 419 (426)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (426)
++.+.++|....... .....+.+.+.+.+...|++|++..+
T Consensus 405 ~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~sG~~~~Y 445 (634)
T PRK08294 405 DREWSTMMAAPPKEG------GGVDPAELQDYFVKHGRFTAGTATHY 445 (634)
T ss_pred HHHHHHHhccCCccc------cccCHHHHHHHHHHhhhhhcccCccc
Confidence 999999997642211 23445678888888889999998776
No 5
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=346.38 Aligned_cols=338 Identities=25% Similarity=0.337 Sum_probs=246.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
++|+||||||+||++|+.|+++|++|+||||++.+.. .++++.+.+++++.|+.+|+ .+.+...+.+........
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~gi~l~~~~~~~L~~~gl--~~~~~~~~~~~~~~~~~~ 75 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE---VGAGIGIGDNVIKKLGNHDL--AKGIKNAGQILSTMNLLD 75 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc---cccceeeChHHHHHHHhcCh--HHHHHhcCCcccceeEEc
Confidence 4899999999999999999999999999999998753 57889999999999999987 555555444322111122
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEec
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~A 166 (426)
.+++.+... ........+.++|..|++.|.+.++...+++++++++++.+ +..++++ +++|+. +++|+||+|
T Consensus 76 ~~g~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--~~~~~viga 147 (373)
T PRK06753 76 DKGTLLNKV-KLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE--TDKVTIH---FADGES--EAFDLCIGA 147 (373)
T ss_pred CCCCEEeec-ccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec--CCcEEEE---ECCCCE--EecCEEEEC
Confidence 223322111 11122345679999999999998875348999999999853 3456666 567765 799999999
Q ss_pred cCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEE
Q 014324 167 DGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246 (426)
Q Consensus 167 dG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (426)
||.+|.+|+++.++....+.++..|++.++...... + ... ...+.++++++++|.+++...|.+.+
T Consensus 148 dG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~--~~~-~~~~~~~g~~~~~p~~~~~~~~~~~~ 213 (373)
T PRK06753 148 DGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKL-----------P--DCA-KEYWGTKGRFGIVPLLNNQAYWFITI 213 (373)
T ss_pred CCcchHHHHHhCCCCCceEcceEEEEEEeccccccC-----------c--cce-EEEEcCCCEEEEEEcCCCeEEEEEEe
Confidence 999999999997766677888888888765332110 0 011 12235566788899988877776655
Q ss_pred ecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCccccccEEEeccccccCCCC
Q 014324 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPH 324 (426)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~ 324 (426)
..+.... . ....+.+.+. ..+..|.+.+..+++.... ...+..+...++++|..+|++|||||||.|+|+
T Consensus 214 ~~~~~~~---~-~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~ 285 (373)
T PRK06753 214 NAKERDP---K-YSSFGKPHLQ----AYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPN 285 (373)
T ss_pred ccccCCc---c-cccccHHHHH----HHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCC
Confidence 4322110 0 1111222222 3345688888887765432 233445556677889999999999999999999
Q ss_pred CcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 325 GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 325 ~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
.|||+|+||+||..|+++|.. .+.+++|+.|+++|+++++.+++.++.++++++.
T Consensus 286 ~GqG~n~ai~Da~~L~~~L~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~ 340 (373)
T PRK06753 286 MGQGAGQAMEDAIVLANCLNA---YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQI 340 (373)
T ss_pred cCccHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhc
Confidence 999999999999999999964 4678999999999999999999999999998865
No 6
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=2.8e-44 Score=347.35 Aligned_cols=347 Identities=22% Similarity=0.270 Sum_probs=243.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+||||||+||++|+.|+++|++|+|+||.+.+. ..|+++.+.|+++++|+++|+ .+.+...+..... ...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~---~~g~gi~l~~~~~~~L~~~Gl--~~~l~~~~~~~~~--~~~ 75 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS---EVGAGLQLAPNAMRHLERLGV--ADRLSGTGVTPKA--LYL 75 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC---cCCccceeChhHHHHHHHCCC--hHHHhhcccCcce--EEE
Confidence 689999999999999999999999999999998764 367899999999999999998 5666554443221 111
Q ss_pred ccccccc---c-c----ccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 87 TDNAKVT---R-T----LARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 87 ~~~~~~~---~-~----~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
.++.... . . .......++..++|..|++.|.+.+. .++ ++++++|++++.+ ...+++++.+..+++
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~--~~~v~v~~~~~~~~~- 152 (400)
T PRK06475 76 MDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT--GNSITATIIRTNSVE- 152 (400)
T ss_pred ecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC--CCceEEEEEeCCCCc-
Confidence 2222110 0 0 00111234556899999999999875 367 9999999999853 345666643333333
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
++++|+||||||.+|.||+++.. ..+.|.++..|++.++.+..... +...++..+ ....+.+++..++.+|+
T Consensus 153 -~~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~g~~~~~~~~p~ 224 (400)
T PRK06475 153 -TVSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPAS-----FLSAMPEHK-AVSAWLGNKAHFIAYPV 224 (400)
T ss_pred -EEecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcchh-----hhhhcccCC-ceEEEEcCCCEEEEEEc
Confidence 38999999999999999999743 45678889999998876532211 111112222 23456688899999999
Q ss_pred cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEec
Q 014324 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIG 315 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvG 315 (426)
+++...+.+.+..+... ...+....+.+. +...+..|.+.+..+++.......++++...+.+.|..+|++|||
T Consensus 225 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiG 298 (400)
T PRK06475 225 KGGKFFNFVAITGGENP--GEVWSKTGDKAH----LKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLG 298 (400)
T ss_pred cCCcEEEEEEEEcCCCC--cccCCCCCCHHH----HHHHhcCCChHHHHHHhcCCceeECcCcccCCCcceecCCEEEEe
Confidence 87754333322222110 111122222332 233467799999988887666555665544444445569999999
Q ss_pred cccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324 316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK 380 (426)
Q Consensus 316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~ 380 (426)
||||.|+|+.|||+|+||+||..|+++|.. .+...+|+.|++.|+++++.++..++....++
T Consensus 299 DAAH~~~P~~GqG~n~aieDa~~La~~L~~---~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~ 360 (400)
T PRK06475 299 DASHAVTPFAAQGAAMAIEDAAALAEALDS---DDQSAGLKRFDSVRKERIAAVAKRGQLNRFAY 360 (400)
T ss_pred cccccCCchhhhhHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999964 36779999999999999999999887444333
No 7
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=9.7e-44 Score=344.11 Aligned_cols=346 Identities=26% Similarity=0.296 Sum_probs=248.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee-ecc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT-IDQ 83 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~ 83 (426)
.+.||+||||||+||++|+.|+++|++|+||||.+.+.. .|+++.+.|+++++|+++|+ .+.+.+...... ...
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~---~g~gi~l~~~~~~~l~~lg~--~~~~~~~~~~~~~~~~ 77 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE---IGAGIQLGPNAFSALDALGV--GEAARQRAVFTDHLTM 77 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc---ccceeeeCchHHHHHHHcCC--hHHHHhhccCCcceEE
Confidence 458999999999999999999999999999999987653 67899999999999999998 555554443321 111
Q ss_pred ccccccccccccc-----cccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 84 NQATDNAKVTRTL-----ARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 84 ~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
....++..+.... ......++..++|..|.+.|.+.+.+ ++ +++++++++++.+ +..++++ +.+|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~--~~~v~v~---~~~g~~ 152 (396)
T PRK08163 78 MDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD--GDGVTVF---DQQGNR 152 (396)
T ss_pred EeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC--CCceEEE---EcCCCE
Confidence 1111222221111 01122345678999999999987753 46 9999999999853 3456665 566764
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
+++|+||+|||.+|.+|+.+.+. .+.+.++..|++.++....... .+ ......+.+++.+++.+|+
T Consensus 153 --~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~---------~~--~~~~~~~~g~~~~~~~~p~ 218 (396)
T PRK08163 153 --WTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPED---------LR--INAPVLWAGPHCHLVHYPL 218 (396)
T ss_pred --EecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcch---------hc--cCccEEEEcCCceEEEEEe
Confidence 89999999999999999998544 5567778888887764322110 01 0112345677788889999
Q ss_pred cCCe-eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEe
Q 014324 236 LNKR-LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLI 314 (426)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~Lv 314 (426)
+++. +++++.+..+.... ......+. +++. +.+..|.|.+.++++.......+......|+++|..+|++|+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~---~~~~~~~~---~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~Li 291 (396)
T PRK08163 219 RGGEQYNLVVTFHSREQEE---WGVKDGSK---EEVL-SYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRVTLL 291 (396)
T ss_pred cCCeEEEEEEEECCCCCcc---cccCCCCH---HHHH-HHHcCCChHHHHHHhcCCceeEccccCCCcccccccCcEEEE
Confidence 8765 55555554322110 00111122 2222 345678888888876654444444555667888999999999
Q ss_pred ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|||||.|+|+.|||+|+||+||..|+++|.... .+.+.+|+.|+++|++++..++..++.++.+++.
T Consensus 292 GDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~-~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~ 358 (396)
T PRK08163 292 GDAAHPMTQYMAQGACMALEDAVTLGKALEGCD-GDAEAAFALYESVRIPRTARVVLSAREMGRIYHA 358 (396)
T ss_pred ecccccCCcchhccHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 999999999999999999999999999997643 5678999999999999999999999999988864
No 8
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=341.55 Aligned_cols=342 Identities=17% Similarity=0.141 Sum_probs=233.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+||+||||||+||++|+.|+++|++|+||||.+.... .+.++.+.++++++|+++|+ .+.+.+.+.+......+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~g~~~~l~~~~~~~l~~lGl--~~~l~~~~~~~~~~~~~~ 75 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT---GGYMVDFWGVGYEVAKRMGI--TDQLREAGYQIEHVRSVD 75 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC---CCeEEeccCcHHHHHHHcCC--HHHHHhccCCccceEEEc
Confidence 4899999999999999999999999999999987642 46788899999999999998 666666554432211122
Q ss_pred cccccccccc----cccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 87 TDNAKVTRTL----ARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 87 ~~~~~~~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
.++..+.... ....+..+..++|..|.+.|.+.++.++ ++++++|++++.++ ..|+++ +++|++ +++|
T Consensus 76 ~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g~~--~~~d 148 (391)
T PRK07588 76 PTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR--DGVRVT---FERGTP--RDFD 148 (391)
T ss_pred CCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC--CeEEEE---ECCCCE--EEeC
Confidence 2333221111 1112234567999999999998877778 99999999998543 466666 567876 7899
Q ss_pred EEEeccCCchhhhhhhcCCCc--ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324 162 LLVAADGCLSSIRQSFLSDFK--LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239 (426)
Q Consensus 162 ~vI~AdG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (426)
+||+|||.+|+||+.+.+... ..+.+...+...++ .. .+........+.+++.++.++|++++.
T Consensus 149 ~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~--~~------------~~~~~~~~~~~~~~g~~~~~~p~~~~~ 214 (391)
T PRK07588 149 LVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVD--GY------------RPRDERTYVLYNEVGRQVARVALRGDR 214 (391)
T ss_pred EEEECCCCCccchhhccCCccceEEEcCcEEEEEEcC--CC------------CCCCCceEEEEeCCCCEEEEEecCCCC
Confidence 999999999999998643222 22344333322221 00 011111223445677788999998887
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcc--eEeeeeccCCCCccccccEEEeccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP--FINAMYDCDPLKQIFWSNVVLIGDA 317 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~rv~LvGDA 317 (426)
..+.+....+... ...+.+...+.+.+.+..|.+....++...... .........++++|..||++|+|||
T Consensus 215 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDA 287 (391)
T PRK07588 215 TLFLFIFRAEHDN-------PPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDA 287 (391)
T ss_pred eEEEEEEEcCCcc-------ccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEcc
Confidence 6666555433211 011233333434444545544333333221111 1111122345678899999999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
||.|+|+.|||+|+||+||..|+++|.... .+.+.+|+.|++.|++++..++..+..+.++++.
T Consensus 288 AH~~~P~~GqG~n~aieDa~~La~~L~~~~-~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 351 (391)
T PRK07588 288 AACPSLLGGEGSGLAITEAYVLAGELARAG-GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAP 351 (391)
T ss_pred ccCCCCccCCcHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence 999999999999999999999999998643 4578999999999999999999999988877754
No 9
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=6.9e-43 Score=345.94 Aligned_cols=350 Identities=21% Similarity=0.262 Sum_probs=250.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC-CCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP-TGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
+.++|+||||||+||++|+.|+++|++|+||||.+... .....++++.|.++++++|+++|+...+.+.+.+.......
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 45899999999999999999999999999999986421 11112356899999999999998643455555443211111
Q ss_pred c---cccccccccccc--c--ccCCCc-chhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 84 N---QATDNAKVTRTL--A--RDDNFN-FRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 84 ~---~~~~~~~~~~~~--~--~~~~~~-~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
. ....+....... . ...+.+ .+.++|..|++.|.+.+...+++++++|++++.. +..|+++ +.+|++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~--~d~VtV~---~~dG~t 234 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDS--GDKVTVV---LENGQR 234 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEe--CCEEEEE---ECCCCE
Confidence 1 111222111100 0 011122 3578999999999988866568899999999854 3467776 567765
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
+++|+||+|||++|++|+.+++...+.+.++..|+++++..+... ...+ ...+.++..+++.++.
T Consensus 235 --i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~-----------~~~~--~~~~~G~~~~~v~~~v 299 (668)
T PLN02927 235 --YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADI-----------ESVG--YRVFLGHKQYFVSSDV 299 (668)
T ss_pred --EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccc-----------cccc--eEEEEcCCeEEEEEcC
Confidence 799999999999999999998777788999999999987643210 0011 1234567777777777
Q ss_pred cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCccccccEEE
Q 014324 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSNVVL 313 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~rv~L 313 (426)
+++...|.++...+.... .......+++ ...+..|.+.+.++++..+. ...+.++...|..+|.+|||+|
T Consensus 300 ~~g~~~~~~f~~~p~~~~-------~~~~~~~e~L-~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvL 371 (668)
T PLN02927 300 GGGKMQWYAFHEEPAGGA-------DAPNGMKKRL-FEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTL 371 (668)
T ss_pred CCCeEEEEEEEECCcccc-------ccchhHHHHH-HHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEE
Confidence 777666655544432110 0122233333 34567899999998876653 3456677777888899999999
Q ss_pred eccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--------cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 314 IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--------VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 314 vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--------~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
+|||||.|+|+.|||+|+||+||..|+++|.... ..+++.+|+.|+++|++++..++..++....++..
T Consensus 372 iGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~ 448 (668)
T PLN02927 372 LGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMAST 448 (668)
T ss_pred EcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997641 23578999999999999999999998877766543
No 10
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=1.4e-42 Score=331.30 Aligned_cols=342 Identities=16% Similarity=0.172 Sum_probs=227.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccccc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQAT 87 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
||+||||||+|+++|+.|+++|++|+||||++.+. ..|.++.+.++++++|+++|+ .+.+.+...+.........
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~---~~g~~i~~~~~a~~~L~~lGl--~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR---PGGQAIDVRGPALDVLERMGL--LAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC---CCceeeeeCchHHHHHHhcCC--HHHHHhhccCccceEEEeC
Confidence 89999999999999999999999999999998865 357788999999999999997 5666554443322122222
Q ss_pred cccccccccc---cc--CCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 88 DNAKVTRTLA---RD--DNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 88 ~~~~~~~~~~---~~--~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
++..+..... .. ...+...++|..|.+.|.+.+..++ +++++++++++.+ +..|+++ +++|++ ++||
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~--~~~v~v~---~~dg~~--~~ad 150 (372)
T PRK05868 78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD--GDSVRVT---FERAAA--REFD 150 (372)
T ss_pred CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec--CCeEEEE---ECCCCe--EEeC
Confidence 3332211110 00 1112346789999999988777788 9999999999853 4567776 677875 7899
Q ss_pred EEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee-
Q 014324 162 LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL- 240 (426)
Q Consensus 162 ~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (426)
+||||||.+|.+|+++++........+..+...+..+... +. .....++.+++..+.++|..++..
T Consensus 151 lvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (372)
T PRK05868 151 LVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFL------------EL-DYWQTWHYGDSTMAGVYSARNNTEA 217 (372)
T ss_pred EEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCC------------CC-CcceEEEecCCcEEEEEecCCCCce
Confidence 9999999999999998643322222223333343332210 11 112223357777888888876543
Q ss_pred eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhh-ccc-HHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccc
Q 014324 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEK-VWL-PEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA 318 (426)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA 318 (426)
+..+.+....... .........+.+.+.+.. .|. +.+.+.+...... ........++++|..|||+|+||||
T Consensus 218 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LvGDAA 291 (372)
T PRK05868 218 RAALAFMDTELRI-----DYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDF-YFDEMSQILMDRWSRGRVALVGDAG 291 (372)
T ss_pred EEEEEEecCCccc-----ccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCce-eeccceEEecCCCCCCCeeeeeccc
Confidence 3333232211110 001112223333333221 565 4555554433222 1221224567889999999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ 381 (426)
Q Consensus 319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 381 (426)
|.++|+.|||+|+||+||+.|+++|.... .+.+++|+.|++.++|++.+.++.......+|.
T Consensus 292 H~~~P~~GqGa~~AleDa~~La~~L~~~~-~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 292 YCCSPLSGQGTSVALLGAYILAGELKAAG-DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGA 353 (372)
T ss_pred ccCCCccCccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhHHHHHhhhhhhccCCccc
Confidence 99999999999999999999999997653 568999999999988888887777666555543
No 11
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=8.5e-43 Score=348.58 Aligned_cols=342 Identities=21% Similarity=0.193 Sum_probs=229.9
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
+..+||+||||||+||++|+.|+++|++|+||||.+.+.. .++++.+.++++++|+++|+ .+.+.+.+.+.....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~---~~ra~~l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~ 82 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD---LPRAVGIDDEALRVLQAIGL--ADEVLPHTTPNHGMR 82 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---CCceeeeCHHHHHHHHHcCC--hhHHHhhcccCCceE
Confidence 4578999999999999999999999999999999988753 45788999999999999998 566555444322111
Q ss_pred ccccccccccccc-c--ccCCCc-chhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324 84 NQATDNAKVTRTL-A--RDDNFN-FRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI 156 (426)
Q Consensus 84 ~~~~~~~~~~~~~-~--~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~ 156 (426)
....+++.+.... . ....++ ...++|..+++.|.+.+. .++ |++++++++++.+++ .|+++++ ..+|+..
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~v~~~-~~~G~~~ 159 (538)
T PRK06183 83 FLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVTVTLT-DADGQRE 159 (538)
T ss_pred EEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEEEEEE-cCCCCEE
Confidence 1112333221111 1 111122 246788999999988764 377 999999999986544 5666643 2367666
Q ss_pred EEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec
Q 014324 157 EIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL 236 (426)
Q Consensus 157 ~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
+++||+||+|||++|.||+++.... ....+...+.+++..... .+......++++++++.++++|.+
T Consensus 160 ~i~ad~vVgADG~~S~vR~~lg~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~p~~ 226 (538)
T PRK06183 160 TVRARYVVGCDGANSFVRRTLGVPF--EDLTFPERWLVVDVLIAN-----------DPLGGPHTYQYCDPARPYTSVRLP 226 (538)
T ss_pred EEEEEEEEecCCCchhHHHHcCCee--eCCCccceEEEEEEeccc-----------CccCCCceEEEECCCCCEEEEEcC
Confidence 7999999999999999999984322 111221111222321000 011112234567888888999998
Q ss_pred CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhccc--HHHHHHhhhcCcceEeeeec--cCCCCccccccEE
Q 014324 237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWL--PEFVKVIKETKEPFINAMYD--CDPLKQIFWSNVV 312 (426)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~rv~ 312 (426)
++...|.+.+...... ......+.+.+++. .|. +...+ ......+. ....++|..|||+
T Consensus 227 ~~~~r~~~~~~~~~~~------~~~~~~~~~~~~l~----~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~~gRv~ 289 (538)
T PRK06183 227 HGRRRWEFMLLPGETE------EQLASPENVWRLLA----PWGPTPDDAE-------LIRHAVYTFHARVADRWRSGRVL 289 (538)
T ss_pred CCeEEEEEEeCCCCCh------hhcCCHHHHHHHHH----hhCCCCcceE-------EEEEEeeeEccEEhhhhccCCEE
Confidence 8877776655322111 01112333333332 221 11101 11111121 2345678899999
Q ss_pred EeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
|+|||||.|+|++|||+|+||+||.+|+|+|... .+...+.+|++|+++|+++++.+++.+..+.++++..
T Consensus 290 L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~ 361 (538)
T PRK06183 290 LAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT 361 (538)
T ss_pred EEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 9999999999999999999999999999999865 2345689999999999999999999999999887653
No 12
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=2.9e-42 Score=332.50 Aligned_cols=347 Identities=20% Similarity=0.180 Sum_probs=226.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
+.++||+||||||+||++|+.|+++|++|+||||.+.+.. .+++..+.|+++++|+++|+ .+.+.+.........
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~---~~~~~~l~~~~~~~L~~lGl--~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRA---QNGADLLKPSGIGVVRAMGL--LDDVFAAGGLRRDAM 77 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccC---CCcccccCccHHHHHHHcCC--HHHHHhcccccccce
Confidence 4678999999999999999999999999999999998753 33456799999999999998 555554433211111
Q ss_pred cccccccccccccc-ccCCCc-chhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324 84 NQATDNAKVTRTLA-RDDNFN-FRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~ 158 (426)
..+.+++....... .....+ +..++|..|++.|.+.+. .++ +++++++++++.++++..+.|+ +++|++ +
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~~--~ 152 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT---LSDGER--V 152 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE---eCCCCE--E
Confidence 11223332211111 111112 345789999999998764 467 9999999999976554444565 567764 8
Q ss_pred eecEEEeccCCchhhhhhhcC-C-CcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec
Q 014324 159 KGNLLVAADGCLSSIRQSFLS-D-FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL 236 (426)
Q Consensus 159 ~~d~vI~AdG~~S~vR~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
++|+||+|||.+|.+|+++.+ . ....+..... .+.+...+.. +... .. +...++++.+++|.+
T Consensus 153 ~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~-~~-~~~~~~~~~~~~p~~ 217 (388)
T PRK07045 153 APTVLVGADGARSMIRDDVLRMPAERVPYATPMA-FGTIALTDSV------------RECN-RL-YVDSNQGLAYFYPIG 217 (388)
T ss_pred ECCEEEECCCCChHHHHHhhCCCcccCCCCccee-EEEEeccCCc------------cccc-eE-EEcCCCceEEEEEcC
Confidence 999999999999999997542 1 1233333333 3333322110 1101 11 122334566788888
Q ss_pred CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEee--eeccCCCCccccccEEEe
Q 014324 237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINA--MYDCDPLKQIFWSNVVLI 314 (426)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~rv~Lv 314 (426)
++..++.+.++.+... .+......+.+.+.+.. .+.+.+.+.++.......+. .....++++|..+|++|+
T Consensus 218 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~Li 290 (388)
T PRK07045 218 DQATRLVVSFPADEMQ----GYLADTTRTKLLARLNE---FVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLL 290 (388)
T ss_pred CCcEEEEEEeccccch----hccCCCCHHHHHHHHhh---hcCccchHHHhccCcccccceeecCccccccccCCCEEEE
Confidence 7777676655432211 01111122222222221 12233333333222111111 112345677889999999
Q ss_pred ccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV--EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~--~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|||||.|+|+.|||+|+||+||..|+++|..... .+.+++|+.|+++|++++..++..++.+.+.++.
T Consensus 291 GDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~ 360 (388)
T PRK07045 291 GDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATTYHD 360 (388)
T ss_pred EccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhccc
Confidence 9999999999999999999999999999987532 3568999999999999999999999998888764
No 13
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-42 Score=335.67 Aligned_cols=345 Identities=15% Similarity=0.151 Sum_probs=217.7
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCcceeccChhHHHHHHHHhcCCchhhhcc-Ccce
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS---PTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPL 79 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~ 79 (426)
|+++||+||||||+|+++|+.|+++|++|+|+||.+.+.... ...++..++++++++|+++|+ .+.+.+. ..+.
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl--~~~~~~~~~~~~ 78 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGV--WQDILARRASCY 78 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCC--chhhhhhcCccc
Confidence 345899999999999999999999999999999998754211 012456789999999999998 5555433 2232
Q ss_pred eecccccccc-ccccccccccCCC--cchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324 80 TIDQNQATDN-AKVTRTLARDDNF--NFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTD 153 (426)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g 153 (426)
.....+..+. ..+. ......+. ..+.++|..|++.|.+.+.+ ++ +++++++++++.++ ..++++ +.+|
T Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g 152 (400)
T PRK08013 79 HGMEVWDKDSFGRIA-FDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLT---LKDG 152 (400)
T ss_pred cEEEEEeCCCCceEE-EcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEE---EcCC
Confidence 2111111110 0010 00011111 23578999999999987754 67 99999999998644 356666 5677
Q ss_pred ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324 154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY 233 (426)
Q Consensus 154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (426)
++ ++||+||||||.+|+||+++.............+...++.+. +... ..+..+.+++++.++
T Consensus 153 ~~--i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~~-~~~~~~~~~g~~~~~ 215 (400)
T PRK08013 153 SM--LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE--------------PHDA-VARQVFHGDGILAFL 215 (400)
T ss_pred CE--EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC--------------CCCC-EEEEEEcCCCCEEEE
Confidence 65 899999999999999999985433222112222333333221 1111 122333455577888
Q ss_pred EecCCe-eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEE
Q 014324 234 ELLNKR-LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVV 312 (426)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~ 312 (426)
|.+++. .++.|....+... . ......+.+.+.+ ...|.+.+... ........+.+. ....++|..+|++
T Consensus 216 p~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l---~~~~~~~l~~~-~~~~~~~~~~l~-~~~~~~~~~grv~ 285 (400)
T PRK08013 216 PLSDPHLCSIVWSLSPEEAQ----R-MQQAPEEEFNRAL---AIAFDNRLGLC-ELESERQVFPLT-GRYARQFAAHRLA 285 (400)
T ss_pred ECCCCCeEEEEEEcCHHHHH----H-HHcCCHHHHHHHH---HHHHhHhhCce-EecCCccEEecc-eeecccccCCcEE
Confidence 887654 4566554321100 0 0011121222211 11122222111 111111122222 2246778899999
Q ss_pred EeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--ccc--HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEG--LLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~--~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
|+|||||.++|+.|||+|+||+||.+|+++|.... ..+ ...+|++|+++|++++..++..+..+.++|+..
T Consensus 286 LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~ 360 (400)
T PRK08013 286 LVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN 360 (400)
T ss_pred EEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999998542 122 235899999999999999999999898888653
No 14
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=5e-42 Score=329.82 Aligned_cols=339 Identities=25% Similarity=0.245 Sum_probs=235.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..||+||||||+||++|+.|++.|++|+|||+++.+.. .|+++.+.++++++|+++|+ .+.+.+.+.+.......
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~g~~l~~~~~~~l~~~gl--~~~~~~~~~~~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV---YGAGITLQGNALRALRELGV--LDECLEAGFGFDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc---CCceeeecHHHHHHHHHcCC--HHHHHHhCCCccceEEE
Confidence 46999999999999999999999999999999988653 57889999999999999987 55555544433221112
Q ss_pred ccccccccccccc---cC-CCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324 86 ATDNAKVTRTLAR---DD-NFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK 159 (426)
Q Consensus 86 ~~~~~~~~~~~~~---~~-~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~ 159 (426)
...++.+...... .. ......++|..+.+.|.+.+. .++ +++++++++++.++ ..++++ +.+|++ ++
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~ 151 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVT---FSDGTT--GR 151 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEE---EcCCCE--EE
Confidence 2233322111100 01 122356889999999988775 477 99999999998543 356665 567765 89
Q ss_pred ecEEEeccCCchhhhhhhcCC-CcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC
Q 014324 160 GNLLVAADGCLSSIRQSFLSD-FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK 238 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (426)
+|+||+|||.+|.+|+++.+. ..+.+.+...|.+.++.+.. .. ...++.+++..+.++|..++
T Consensus 152 ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~~p~~~~ 215 (375)
T PRK06847 152 YDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAE---------------VD-RSLMYLGPTTKAGVVPLSED 215 (375)
T ss_pred cCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCC---------------cc-ceEEEeCCCcEEEEEcCCCC
Confidence 999999999999999998554 35667788888776654321 00 11345567777888888776
Q ss_pred eeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccH-HHHHHhhhcC---cceEeeeeccCCCCccccccEEEe
Q 014324 239 RLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLP-EFVKVIKETK---EPFINAMYDCDPLKQIFWSNVVLI 314 (426)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~rv~Lv 314 (426)
...+.+....+.. ...+.+.+.+.+.+....|.+ ....+.+... ....+.+....+.++|..+|++|+
T Consensus 216 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~Li 287 (375)
T PRK06847 216 LMYLFVTEPRPDN--------PRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLI 287 (375)
T ss_pred eEEEEEeccCccc--------ccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEE
Confidence 5543332221111 011233333444444555664 3444433211 112222322333456889999999
Q ss_pred ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|||||.|+|+.|||+|+||+||.+|+++|... ...+++|+.|+++|+++++.+++.++.++.++.+
T Consensus 288 GDAaH~~~P~~GqG~n~aieDA~~La~~L~~~--~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~ 353 (375)
T PRK06847 288 GDAAHATTPHLAQGAGMAIEDAIVLAEELARH--DSLEAALQAYYARRWERCRMVVEASARIGRIEIE 353 (375)
T ss_pred echhccCCCCccccHHHHHHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Confidence 99999999999999999999999999999864 5678999999999999999999999999887654
No 15
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=1.5e-42 Score=333.25 Aligned_cols=344 Identities=22% Similarity=0.153 Sum_probs=230.3
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
.+||+||||||+||++|+.|+++|++|+||||.+... ...++++.|+++++++|+++|+ .+.+.....+.......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~--~~~~r~~~l~~~~~~~L~~lG~--~~~i~~~~~~~~~~~~~ 77 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPREL--LERGRGIALSPNALRALERLGL--WDRLEALGVPPLHVMVV 77 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc--ccCceeeeecHhHHHHHHHcCC--hhhhhhccCCceeeEEE
Confidence 4799999999999999999999999999999993221 2356899999999999999998 35666655543322222
Q ss_pred ccccc-cccccc-cccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEecc-CCceEEEe
Q 014324 86 ATDNA-KVTRTL-ARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQ-TDEVIEIK 159 (426)
Q Consensus 86 ~~~~~-~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~-~g~~~~~~ 159 (426)
...+. .+.... ..........+.|..|++.|.+++.+ ++ ++++++|+.++.+++ .++++ ++ +|+ +++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~v~---l~~dG~--~~~ 150 (387)
T COG0654 78 DDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVTVT---LSFDGE--TLD 150 (387)
T ss_pred ecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceEEE---EcCCCc--EEe
Confidence 22221 111111 11124456789999999999998863 47 999999999997554 45555 34 787 499
Q ss_pred ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324 160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (426)
||+||||||.+|.||+.+. ........|...+.+...... .| .....+.++.+.+.+.++|.++..
T Consensus 151 a~llVgADG~~S~vR~~~~-~~~~~~~~y~~~~l~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~p~~~~~ 216 (387)
T COG0654 151 ADLLVGADGANSAVRRAAG-IAEFSGRDYGQTALVANVEPE------------EP-HEGRAGERFTHAGPFALLPLPDNR 216 (387)
T ss_pred cCEEEECCCCchHHHHhcC-CCCccCCCCCceEEEEEeecC------------CC-CCCeEEEEecCCCceEEEecCCCc
Confidence 9999999999999999986 111112123322323332211 11 223445566777788999999877
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHH-HHhhhcCcceEeeeeccCCCCccccccEEEecccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFV-KVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA 318 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA 318 (426)
...+|+......+. ....+.+.+...+. ..|..... ..+.... ...+.........+|..+|++|+||||
T Consensus 217 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAA 287 (387)
T COG0654 217 SSVVWSLPPGPAED-----LQGLSDEEFLRELQ---RRLGERDPLGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAA 287 (387)
T ss_pred eeEEEECChhhHHH-----HhcCCHHHHHHHHH---HhcCcccccceEEEcc-ccccccccchhhhheecCcEEEEeecc
Confidence 88888776543221 11112222212111 11221110 0010000 111111113334567789999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGV-EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~-~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
|.|+|+.|||+|+||+||.+|+++|..... ...+.+|+.|+++|++++..++..+..+.+.|...
T Consensus 288 H~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~ 353 (387)
T COG0654 288 HAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSAD 353 (387)
T ss_pred ccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC
Confidence 999999999999999999999999998743 12289999999999999999999999887777653
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.4e-43 Score=336.59 Aligned_cols=334 Identities=16% Similarity=0.174 Sum_probs=220.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG-SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
+||+||||||+|+++|+.|++.|++|+|+|+.+..... ...++++.++|+++++|+++|+ .+.+.....+.......
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDI--WEELEKFVAEMQDIYVV 79 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCc--HHHHHhhcCCCcEEEEE
Confidence 58999999999999999999999999999998543211 1246889999999999999998 45555444332221111
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
..++...............+.++|..|++.|.+.+.+ ++ ++++++++++..++ ..++++ +.++ +++||+
T Consensus 80 ~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~---~~~~---~~~adl 151 (374)
T PRK06617 80 DNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIK---FDDK---QIKCNL 151 (374)
T ss_pred ECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEE---EcCC---EEeeCE
Confidence 2222211111111111234678999999999998764 36 88999999998544 356666 4444 389999
Q ss_pred EEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe-e
Q 014324 163 LVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR-L 240 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (426)
||||||.+|++|++++.+. ...| ...+...++.+. +... ..+.++.+.++++++|++++. .
T Consensus 152 vIgADG~~S~vR~~l~~~~~~~~y--~~~~~~~v~~~~--------------~~~~-~~~~~~~~~g~~~~lPl~~~~~~ 214 (374)
T PRK06617 152 LIICDGANSKVRSHYFANEIEKPY--QTALTFNIKHEK--------------PHEN-CAMEHFLPLGPFALLPLKDQYAS 214 (374)
T ss_pred EEEeCCCCchhHHhcCCCcccccC--CeEEEEEEeccC--------------CCCC-EEEEEecCCCCEEEeECCCCCeE
Confidence 9999999999999986543 2334 233333333221 1111 223344555668888998775 4
Q ss_pred eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccccc
Q 014324 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP 320 (426)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~ 320 (426)
.++|....+... .....+.+.+.+.++.. +.+.+.+ +........+++... ++++|..+|++|+|||||+
T Consensus 215 ~~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~-i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~ 284 (374)
T PRK06617 215 SVIWSTSSDQAA-----LIVNLPVEEVRFLTQRN---AGNSLGK-ITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHT 284 (374)
T ss_pred EEEEeCCHHHHH-----HHHcCCHHHHHHHHHHh---hchhcCc-eeeccceeEEEeeee-eccceecCCEEEEEccccc
Confidence 666655321100 00111222232222211 1122222 111111223333323 5678999999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 321 TTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 321 ~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
|+|+.|||+|+||+||..|+++|.. ..+|++|+++|++++..++..+..+.++|+..
T Consensus 285 ~~P~~GQG~n~gl~Da~~La~~L~~------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~ 341 (374)
T PRK06617 285 VHPLAGQGLNQGIKDIEILSMIVSN------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY 341 (374)
T ss_pred CCCCccccHHHHHHHHHHHHHHHcC------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999842 25799999999999999999999999998754
No 17
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=7.3e-43 Score=333.36 Aligned_cols=339 Identities=23% Similarity=0.262 Sum_probs=214.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-cc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-QN 84 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 84 (426)
.+||+||||||+||++|+.|+++|++|+||||++.+.. .++++.+.++++++|+++|+ .+.+.+...+.... ..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~---~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~~~~~~~~ 75 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRP---KGRGIGLSPNSLRILQRLGL--LDEILARGSPHEVMRIF 75 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCC---SSSSEEEEHHHHHHHHHTTE--HHHHHHHSEEECEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccc---cccccccccccccccccccc--hhhhhhhcccccceeeE
Confidence 37999999999999999999999999999999999764 45788999999999999998 66666655432211 11
Q ss_pred cccc--cc-------ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccC
Q 014324 85 QATD--NA-------KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQT 152 (426)
Q Consensus 85 ~~~~--~~-------~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~ 152 (426)
.... +. ....... .........+.|..|++.|.+.+++ ++ +++++++++++.+.+ .+++.+.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~ 153 (356)
T PF01494_consen 76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGED 153 (356)
T ss_dssp EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCT
T ss_pred eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccC
Confidence 1111 00 0001111 1223345678999999999998764 78 999999999986554 55555555667
Q ss_pred CceEEEeecEEEeccCCchhhhhhhcCCCcccccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEE
Q 014324 153 DEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSV 231 (426)
Q Consensus 153 g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (426)
|+.++++||+||+|||++|+||+++..+.......+ ..+..+....... . +... ..++...+...++
T Consensus 154 g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~-~~~~~~~~~~~~~ 221 (356)
T PF01494_consen 154 GEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLS------D-----PWED-HCFIYSPPSGGFA 221 (356)
T ss_dssp CEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSH------T-----TTSC-EEEEEEETTEEEE
T ss_pred CceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccc------c-----cccc-cccccccccccee
Confidence 887789999999999999999999854422111111 2222222211110 0 0001 2333444555567
Q ss_pred EEEecC-CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccccc
Q 014324 232 FYELLN-KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN 310 (426)
Q Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r 310 (426)
++|..+ +...+.+.+......... . .....+.+.+.....+.+..... .......+... ..+.++|..+|
T Consensus 222 ~~p~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~gr 292 (356)
T PF01494_consen 222 IIPLENGDRSRFVWFLPFDESKEER---P---EEFSPEELFANLPEIFGPDLLET--EIDEISAWPIP-QRVADRWVKGR 292 (356)
T ss_dssp EEEETTTTEEEEEEEEETTTTTCCS---T---HCHHHHHHHHHHHHHHHTCHHHH--EEEEEEEEEEE-EEEESSSEETT
T ss_pred EeeccCCccceEEEeeecccccccc---c---ccccccccccccccccccccccc--ccccccccccc-cccccccccce
Confidence 888877 445555555544322111 1 11112222221111111111111 11111122221 33455688899
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHH
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLH 372 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~ 372 (426)
|+|||||||.|+|+.|||+|+||+||..|+++|.... +...+++|+.|+++|+++++++++.
T Consensus 293 v~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 293 VLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp EEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999874 3677899999999999999998875
No 18
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=8.7e-42 Score=328.09 Aligned_cols=346 Identities=15% Similarity=0.115 Sum_probs=218.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
.+||+||||||+|+++|+.|+++|++|+||||.+.+......+.+. +.++++++|+++|+ .+.+...+.+.......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~-l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~~~ 78 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV-LEQGTVDLLREAGV--DERMDREGLVHEGTEIA 78 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee-ECHHHHHHHHHCCC--hHHHHhcCceecceEEe
Confidence 3799999999999999999999999999999998643212234444 89999999999998 66666655443211111
Q ss_pred ccccccccccccc-cCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 86 ATDNAKVTRTLAR-DDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
..+......... ....+.....+..+.+.|.+.+. .++ ++++++++.+... +...+.|++. .+|+..++++|+
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~--~~g~~~~i~adl 154 (390)
T TIGR02360 79 -FDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFE--RDGERHRLDCDF 154 (390)
T ss_pred -eCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEE--ECCeEEEEEeCE
Confidence 122111000111 01111112346677788877664 366 8899988887642 2234445421 367666699999
Q ss_pred EEeccCCchhhhhhhcCCCcccccce--EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324 163 LVAADGCLSSIRQSFLSDFKLRYSGY--CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL 240 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (426)
||||||.+|.||+++.....+.+.++ ..|.+++...+.. .... ++.+++..+.++|++++..
T Consensus 155 vIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~ 218 (390)
T TIGR02360 155 IAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV--------------SHEL--IYSNHERGFALCSMRSATR 218 (390)
T ss_pred EEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC--------------CCce--EEEeCCCceEEEeccCCCc
Confidence 99999999999999855444445544 3566655422110 0111 2334455566667654332
Q ss_pred -eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEe-eeeccCCCCccccccEEEecccc
Q 014324 241 -NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN-AMYDCDPLKQIFWSNVVLIGDAA 318 (426)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~rv~LvGDAA 318 (426)
.|.+.+ +.... . ...+.+.+.+.+. ..+.+.+.+.+........+ ........++|..||++|+||||
T Consensus 219 ~~~~~~~--~~~~~-~----~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAA 288 (390)
T TIGR02360 219 SRYYVQV--PLTDK-V----EDWSDDRFWAELK---RRLPSEAAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAA 288 (390)
T ss_pred ceEEEEc--CCCCC-h----hhCChhHHHHHHH---HhcCchhhhhhccCCccceeeeeHHhhccccCccCCEEEEEccc
Confidence 233332 22110 0 0011111122121 22334444443322211111 01112234567889999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA 384 (426)
Q Consensus 319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 384 (426)
|.|+|+.|||+|+||+||.+|+++|......+.+.+|+.|++.|++|++.+++.++.++++++.+.
T Consensus 289 H~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~ 354 (390)
T TIGR02360 289 HIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFP 354 (390)
T ss_pred cCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999987644567899999999999999999999999999988664
No 19
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=8.9e-42 Score=329.08 Aligned_cols=347 Identities=14% Similarity=0.081 Sum_probs=212.3
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
++||+||||||+||++|+.|+++|++|+|+||++.+......+. ..+.|+++++|+++|+ .+.+...+.+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a-~~l~~~~~~~l~~lGl--~~~l~~~~~~~~~~~~- 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRA-GVLEQGTVDLLREAGV--GERMDREGLVHDGIEL- 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccce-eEECHhHHHHHHHcCC--hHHHHhcCCccCcEEE-
Confidence 47999999999999999999999999999999986432222233 3489999999999998 6666665544221111
Q ss_pred cccccccccccccc-CCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 86 ATDNAKVTRTLARD-DNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
..+++......... .......++|..+.+.|.+.+. .++ +++++++++++.. +...+.|++ ..+|+..+++||+
T Consensus 78 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~--~~~G~~~~i~ad~ 154 (392)
T PRK08243 78 RFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTY--EKDGEEHRLDCDF 154 (392)
T ss_pred EECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEE--EcCCeEEEEEeCE
Confidence 12232111011100 1122334567777777766543 577 9999999998741 333455553 2467766799999
Q ss_pred EEeccCCchhhhhhhcCCCcccccce--EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324 163 LVAADGCLSSIRQSFLSDFKLRYSGY--CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL 240 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (426)
||||||.+|.||+++.......+... ..|.+++...+ +... ...+...+....++++.+++..
T Consensus 155 vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (392)
T PRK08243 155 IAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAP--------------PVSD-ELIYANHERGFALCSMRSPTRS 219 (392)
T ss_pred EEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCC--------------CCCC-ceEEeeCCCceEEEecCCCCcE
Confidence 99999999999999854433333332 33444332111 0001 1112223334444443344444
Q ss_pred eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccccc
Q 014324 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP 320 (426)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~ 320 (426)
.+.+.+..... ...+ ......+.+.. ....+. ...+..................++|..||++|||||||.
T Consensus 220 ~~~~~~~~~~~---~~~~---~~~~~~~~l~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~ 290 (392)
T PRK08243 220 RYYLQCPLDDK---VEDW---SDERFWDELRR-RLPPED--AERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHI 290 (392)
T ss_pred EEEEEecCCCC---cccC---ChhHHHHHHHH-hcCccc--ccccccCccccccceeeeeceeccceeCCEEEEeccccc
Confidence 44433322111 0000 11222222222 111110 000010000000000111223456788999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 321 TTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 321 ~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
++|++|||+|+||+||.+|+++|......+.+++|+.|+++|+++++.++..+..+.++++..
T Consensus 291 ~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~ 353 (392)
T PRK08243 291 VPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRRVWKAERFSWWMTSMLHRF 353 (392)
T ss_pred CCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999998864345689999999999999999999999999988765
No 20
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-42 Score=339.23 Aligned_cols=340 Identities=18% Similarity=0.135 Sum_probs=217.6
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
|+.+||+||||||+||++|+.|+++|++|+||||.+.+.. .+++..++++++++|+++|+ .+.+.+.+.+.....
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~---~~ra~~l~~~~~e~l~~lGl--~~~l~~~~~~~~~~~ 75 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFP---GSRGKGIQPRTQEVFDDLGV--LDRVVAAGGLYPPMR 75 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCc---CccceeecHHHHHHHHHcCc--HHHHHhcCcccccee
Confidence 4568999999999999999999999999999999988753 45778899999999999998 566666554432111
Q ss_pred cccccccccccccc------ccCCC-cchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324 84 NQATDNAKVTRTLA------RDDNF-NFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE 154 (426)
Q Consensus 84 ~~~~~~~~~~~~~~------~~~~~-~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~ 154 (426)
.+...+........ ....+ ....++|..+++.|.+.+.+ ++ +++++++++++.+++ .|++++.+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~v~~~~~~~~- 152 (502)
T PRK06184 76 IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD--GVTARVAGPAGE- 152 (502)
T ss_pred EEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEEEEEEeCCCe-
Confidence 11111211100000 01111 23467889999999987764 77 999999999986443 566654332333
Q ss_pred eEEEeecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCC-ceEEE
Q 014324 155 VIEIKGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASG-THSVF 232 (426)
Q Consensus 155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 232 (426)
.+++||+||+|||++|.||+++....... +.....+...+..+. .+. ...+.+..+. +.+.+
T Consensus 153 -~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~ 216 (502)
T PRK06184 153 -ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG-------------LDR--DAWHQWPDGDMGMIAL 216 (502)
T ss_pred -EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec-------------CCC--cceEEccCCCCcEEEE
Confidence 35899999999999999999985433211 111011111111110 010 1122233333 66777
Q ss_pred EEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCCCcccccc
Q 014324 233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPLKQIFWSN 310 (426)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~r 310 (426)
+|++++.. |.+++..+... ....+.+.+.+.+..... +.+ + . +. .......+. ....++|..||
T Consensus 217 ~p~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~-~~~-~-~-~~---~~~~~~~~~~~~~~a~~~~~gR 282 (502)
T PRK06184 217 CPLPGTDL-FQIQAPLPPGG------EPDLSADGLTALLAERTG-RTD-I-R-LH---SVTWASAFRMNARLADRYRVGR 282 (502)
T ss_pred EEccCCCe-EEEEEEcCCCc------cCCCCHHHHHHHHHHhcC-CCC-c-c-ee---eeeeeeccccceeEhhhhcCCc
Confidence 88876542 34444332211 111234444444432211 110 0 0 00 011111111 22246788899
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ 381 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 381 (426)
|+|+|||||.|+|++|||||+||+||.+|+|+|+.......+.+|++|+++|+++++.+++.+..+.+.+.
T Consensus 283 v~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 283 VFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred EEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987633367889999999999999999999988776653
No 21
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=8e-42 Score=342.84 Aligned_cols=351 Identities=17% Similarity=0.155 Sum_probs=227.2
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT 80 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (426)
||++..+||+||||||+||++|+.|+++|++|+||||.+.+.. .++++.++++++++|+++|+ .+.+.+.+.+..
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~---~~ra~~l~~r~~e~L~~lGl--~~~l~~~g~~~~ 76 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF---NPKANTTSARSMEHFRRLGI--ADEVRSAGLPVD 76 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC---CCccccCCHHHHHHHHhcCh--HHHHHhhcCCcc
Confidence 5677789999999999999999999999999999999986543 55788899999999999998 666766654431
Q ss_pred ec----cccccccccccccccc----------------cCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEe
Q 014324 81 ID----QNQATDNAKVTRTLAR----------------DDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCIS 137 (426)
Q Consensus 81 ~~----~~~~~~~~~~~~~~~~----------------~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~ 137 (426)
.. +.....++.+...... ........++|..+++.|.+.+. .++ +++++++++++.+
T Consensus 77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~ 156 (545)
T PRK06126 77 YPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD 156 (545)
T ss_pred ccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC
Confidence 10 1111122211111000 01112456889999999998764 367 9999999999854
Q ss_pred cCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCcc-cccceEEEEEEeeCCCCCchHHHhhhhcccCCC
Q 014324 138 EVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL 216 (426)
Q Consensus 138 ~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (426)
+ ..|++++.+..+|+..++++|+||+|||++|.||+++...... .+..+. ....+..+... . ..+..
T Consensus 157 ~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~-~~~~~~~~~l~--~-------~~~~~ 224 (545)
T PRK06126 157 A--DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRD-LSIYIRAPGLA--A-------LVGHD 224 (545)
T ss_pred C--CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceE-EEEEEEcCchH--H-------HhcCC
Confidence 3 4566666555678767799999999999999999998533211 111111 11122221110 0 01111
Q ss_pred CceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEee
Q 014324 217 GKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINA 296 (426)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (426)
....+++.+++...++++.+.+. .|.+. ..+.... ....+.+.+.+.+.... ...+...+. ....|.
T Consensus 225 ~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~i~---~~~~w~ 291 (545)
T PRK06126 225 PAWMYWLFNPDRRGVLVAIDGRD-EWLFH-QLRGGED-----EFTIDDVDARAFVRRGV---GEDIDYEVL---SVVPWT 291 (545)
T ss_pred CceEEEEECCCccEEEEEECCCC-eEEEE-EecCCCC-----CCCCCHHHHHHHHHHhc---CCCCCeEEE---eecccc
Confidence 22335556777676777765543 34433 1111110 00112222333322211 111100000 011122
Q ss_pred eeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014324 297 MYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRR 375 (426)
Q Consensus 297 ~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~ 375 (426)
.....+++|..|||+|+|||||.|+|++|||+|+||+||.+|+|+|.... ....+.+|+.|+++|+++++.+++.+..
T Consensus 292 -~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~ 370 (545)
T PRK06126 292 -GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARR 370 (545)
T ss_pred -hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHH
Confidence 22445677888999999999999999999999999999999999998763 3456799999999999999999999998
Q ss_pred hhhhhhc
Q 014324 376 LGRIKQG 382 (426)
Q Consensus 376 ~~~~~~~ 382 (426)
+...+..
T Consensus 371 ~~~~~~~ 377 (545)
T PRK06126 371 NADALGS 377 (545)
T ss_pred HHHHhcc
Confidence 8776543
No 22
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=1e-41 Score=330.18 Aligned_cols=345 Identities=16% Similarity=0.162 Sum_probs=222.5
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc-CCCCC-CCCCcceeccChhHHHHHHHHhcCCchhhhcc-Cc
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA-GGPPT-GSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TV 77 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~ 77 (426)
|| ..+||+||||||+|+++|+.|+++|++|+|+|+. +.+.. ..+..++..++++++++|+++|+ .+.+.+. ..
T Consensus 1 ~m--~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl--~~~l~~~~~~ 76 (405)
T PRK08850 1 MM--QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGA--WQGIEARRAA 76 (405)
T ss_pred CC--CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCc--hhhhhhhhCC
Confidence 55 4689999999999999999999999999999997 32211 11124678899999999999998 5666543 33
Q ss_pred ceeecccccccccccccccc--ccC-C-CcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEec
Q 014324 78 PLTIDQNQATDNAKVTRTLA--RDD-N-FNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVL 150 (426)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~ 150 (426)
+... ...+ ++........ ... . ...+.+.+..+++.|.+.+.+ ++ +++++++++++.+++ .++++ +
T Consensus 77 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~~v~---~ 149 (405)
T PRK08850 77 PYIA-MEVW-EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES--EAWLT---L 149 (405)
T ss_pred cccE-EEEE-eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eEEEE---E
Confidence 3211 1111 1111111110 001 1 113457788899988887653 67 999999999986443 56665 5
Q ss_pred cCCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceE
Q 014324 151 QTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHS 230 (426)
Q Consensus 151 ~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (426)
++|++ ++||+||+|||.+|.+|+++.........+...+.+.+..+. +.. ...+.++++++.+
T Consensus 150 ~~g~~--~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~-~~~~~~~~~~g~~ 212 (405)
T PRK08850 150 DNGQA--LTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD--------------PHN-SVARQIFTPQGPL 212 (405)
T ss_pred CCCCE--EEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC--------------CCC-CEEEEEEcCCCce
Confidence 67764 899999999999999999986544333334455555554321 111 1334456777788
Q ss_pred EEEEecCC-eeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccc
Q 014324 231 VFYELLNK-RLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWS 309 (426)
Q Consensus 231 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 309 (426)
.++|++++ ..++.|..+...... ....+.+.+.+.+. ..+.+.+.. ++.......+++. ....++|..+
T Consensus 213 ~~lp~~~~~~~~~~w~~~~~~~~~-----~~~~~~~~~~~~l~---~~~~~~~~~-~~~~~~~~~~pl~-~~~~~~~~~~ 282 (405)
T PRK08850 213 AFLPMSEPNMSSIVWSTEPLRAEA-----LLAMSDEQFNKALT---AEFDNRLGL-CEVVGERQAFPLK-MRYARDFVRE 282 (405)
T ss_pred EEEECCCCCeEEEEEECCHHHHHH-----HHcCCHHHHHHHHH---HHHhhhhCc-EEEcccccEEecc-eeeccccccC
Confidence 88898764 456666553211100 00011111111111 111111110 1101111111221 2335678889
Q ss_pred cEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 310 NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 310 rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
|++|+|||||.++|+.|||+|+||+||.+|+++|.... ....+.+|+.|+++|+++++.++..+..+.++|+..
T Consensus 283 rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~ 360 (405)
T PRK08850 283 RVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS 360 (405)
T ss_pred cEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999998642 113478999999999999999999999999998753
No 23
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1.4e-41 Score=334.34 Aligned_cols=382 Identities=14% Similarity=0.136 Sum_probs=248.9
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
...+||+||||||+|+++|+.|+++|++|+|+||...... .+.|+.++|++.++|+++|+ .+.+..........+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~---~~~g~~L~p~g~~~L~~LGl--~d~l~~~~~~~~~~~ 115 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE---RMMGEFMQPGGRFMLSKLGL--EDCLEGIDAQKATGM 115 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCc---cccccccCchHHHHHHHcCC--cchhhhccCcccccE
Confidence 3568999999999999999999999999999999865432 44688999999999999998 555554332211122
Q ss_pred cccccccccccccc-ccC----CCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 84 NQATDNAKVTRTLA-RDD----NFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~----~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
..+.+++....... ... ....+.++|..|.+.|.+.+.+ ++ ++.+ +++++..+ ++..+.|++. .++|++
T Consensus 116 ~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~-~~dG~~ 192 (514)
T PLN02985 116 AVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYK-NSAGEE 192 (514)
T ss_pred EEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEE-cCCCCE
Confidence 22233332111111 111 1123578899999999987743 56 6655 56666543 3322334432 457777
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
.+++||+||+|||.+|++|+++.......++....|. ..... ...+. ..+++++++.+++++|+
T Consensus 193 ~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~---~~~~~----------~~~~~---~~~~~~~~~~~~l~ypi 256 (514)
T PLN02985 193 TTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI---SKNCR----------LEEPE---KLHLIMSKPSFTMLYQI 256 (514)
T ss_pred EEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE---Ecccc----------CCCCC---cceEEcCCCceEEEEEe
Confidence 6788999999999999999998643332222222222 11100 00121 22456678888999999
Q ss_pred cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHH-HhhcccHHHHHHhhh-cCcc--eEeeeeccCCCCccccccE
Q 014324 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEE-AEKVWLPEFVKVIKE-TKEP--FINAMYDCDPLKQIFWSNV 311 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~p~~~~~~~rv 311 (426)
++++.++.+.++.+... . .....+..++.. ..+.+.+.+++.+.. .+.. .........|...+..+|+
T Consensus 257 ~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~v 328 (514)
T PLN02985 257 SSTDVRCVFEVLPDNIP-------S-IANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGV 328 (514)
T ss_pred CCCeEEEEEEEeCCCCC-------C-cChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCE
Confidence 88887777666532211 0 012223333322 223344455554432 1111 1111111223334455899
Q ss_pred EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCC
Q 014324 312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPD 387 (426)
Q Consensus 312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (426)
+|+|||||+++|+.|||||+|++||..|+++|.... ..+..++|+.|+++|+++++.++..|..+.++|....++.
T Consensus 329 vLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~ 408 (514)
T PLN02985 329 IVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEA 408 (514)
T ss_pred EEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999999997642 2356789999999999999999999999999997543221
Q ss_pred CCCCCCCCCChhhhHHHhhccCCcccCCCccccccc
Q 014324 388 REPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTL 423 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (426)
. -.....|.+.+..+..+++|.-.|+-.+.
T Consensus 409 ~------~~l~~~~f~y~~~g~~~~~~~~~ll~~~~ 438 (514)
T PLN02985 409 K------EAMRQGCYDYLCSGGFRTSGMMALLGGMN 438 (514)
T ss_pred H------HHHHHHHHHHHHcCCccccccHHHHcCCC
Confidence 1 12245789999999999999988886654
No 24
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=3.6e-41 Score=328.64 Aligned_cols=372 Identities=17% Similarity=0.166 Sum_probs=232.8
Q ss_pred ccEEEEcCChHHHHHHHHHHH----cCCcEEEEcccCCCCCC---------CCCcceeccChhHHHHHHHHhcCCchhhh
Q 014324 7 GKAVIVGGSIAGISCAHALLR----AGWDVVVLEKAGGPPTG---------SPTGAGLGLDRPAQRIIQSWLNGRPHLLH 73 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~----~G~~v~v~E~~~~~~~~---------~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 73 (426)
+||+||||||+|+++|+.|++ +|++|+|||+++.+... ...++++.++++++++|+++|+ .+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~--~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGA--WDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCc--hhhhh
Confidence 699999999999999999999 89999999996544321 0134689999999999999998 55655
Q ss_pred ccC-cceeecccccccccccccccccc-CCCcchhccHHHHHHHHHhcCCC----Ce-eEeeeeEEEEEEe-----cCCc
Q 014324 74 LAT-VPLTIDQNQATDNAKVTRTLARD-DNFNFRAAHWADLHGLLYNALPP----EI-FLRGHQYLSFCIS-----EVKT 141 (426)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~~----~~-i~~~~~v~~~~~~-----~~~~ 141 (426)
+.. .+......+...+.......... .....+.++|..|++.|.+.+.. ++ +++++++++++.. ++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 79 SDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred hhcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCC
Confidence 432 22221111111111000000001 11124568899999999886653 37 9999999999753 2345
Q ss_pred eEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCc-ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCcee
Q 014324 142 TVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCL 220 (426)
Q Consensus 142 ~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (426)
.++|+ +.+|++ ++||+||||||++|.||+++..... ..|..... .+.+..+.. +. ....
T Consensus 159 ~v~v~---~~~g~~--i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~-v~~v~~~~~-------------~~-~~~~ 218 (437)
T TIGR01989 159 WVHIT---LSDGQV--LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAV-VATLKLEEA-------------TE-NDVA 218 (437)
T ss_pred ceEEE---EcCCCE--EEeeEEEEecCCCChhHHHcCCCccceeeccEEE-EEEEEcccC-------------CC-CCeE
Confidence 67776 567765 8999999999999999999854432 22333322 222222210 11 1122
Q ss_pred eEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHh----hcccH------HHHHHhh---
Q 014324 221 YFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAE----KVWLP------EFVKVIK--- 287 (426)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~--- 287 (426)
+..+.+++.+.++|++++..+++|......... ....+.+.+.+.+.... ..|.. .+.++.+
T Consensus 219 ~~~f~~~g~~~~lPl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 293 (437)
T TIGR01989 219 WQRFLPTGPIALLPLPDNNSTLVWSTSPEEALR-----LLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIG 293 (437)
T ss_pred EEEECCCCCEEEeECCCCCEEEEEeCCHHHHHH-----HHcCCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 334457778888999888777777654221100 01112222222221111 00000 0000000
Q ss_pred -----------------h-cC-cceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc
Q 014324 288 -----------------E-TK-EPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV 348 (426)
Q Consensus 288 -----------------~-~~-~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~ 348 (426)
. .. .....++ ...+.++|..+|++|+|||||.++|+.|||+|+||+||.+|+++|.+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~ 372 (437)
T TIGR01989 294 FRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVS 372 (437)
T ss_pred ccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 0011111 23445678889999999999999999999999999999999999987631
Q ss_pred --c--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCcccc
Q 014324 349 --E--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVD 420 (426)
Q Consensus 349 --~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (426)
. ..+.+|+.|+++|+++++.++..+..+.++|..... ....+++.++..+..+|++..
T Consensus 373 ~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~--------------~~~~~R~~~l~~~~~~~~~k~ 434 (437)
T TIGR01989 373 VGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFP--------------PVVALRTFGLNLTNYIGPLKN 434 (437)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------------HHHHHHHHHHHHhhhCHHhHH
Confidence 1 235799999999999999999999999999865321 344445554445555555543
No 25
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=4e-41 Score=333.78 Aligned_cols=338 Identities=17% Similarity=0.125 Sum_probs=219.6
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
++||+||||||+||++|+.|+++|++|+||||.+.+.. .++++.++++++++|+++|+ .+.+.+.+.+.......
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~---~~ra~~l~~~~~e~l~~lGl--~~~l~~~~~~~~~~~~~ 76 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVP---YSKALTLHPRTLEILDMRGL--LERFLEKGRKLPSGHFA 76 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---CcceeEecHHHHHHHHhcCc--HHHHHhhcccccceEEe
Confidence 37999999999999999999999999999999988643 56889999999999999998 56666554432211111
Q ss_pred ccccccccccccccCCCc-chhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 86 ATDNAKVTRTLARDDNFN-FRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
...+. +.... .....+ ...++|..+++.|.+.+. .++ +++++++++++.+++ .++++++ ..+| ..++++|+
T Consensus 77 ~~~~~-~~~~~-~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~v~~~-~~~g-~~~i~a~~ 150 (493)
T PRK08244 77 GLDTR-LDFSA-LDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVEVVVR-GPDG-LRTLTSSY 150 (493)
T ss_pred ccccc-CCccc-CCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEEEEEE-eCCc-cEEEEeCE
Confidence 11111 10000 011122 245789999999988775 477 999999999986443 5665543 2345 23589999
Q ss_pred EEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeE
Q 014324 163 LVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNW 242 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (426)
||+|||.+|.||+++..+.......+..+.+.+.... +... ..+.++.++++++++|++++..++
T Consensus 151 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~g~~~~~P~~~~~~~~ 215 (493)
T PRK08244 151 VVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD--------------PPPS-SVLSLCTREGGVMIVPLSGGIYRV 215 (493)
T ss_pred EEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC--------------CCCc-ceeEEEeCCceEEEEECCCCeEEE
Confidence 9999999999999985333211112222222222111 1111 122345677888999998887666
Q ss_pred EEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCCCccccccEEEecccccc
Q 014324 243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPLKQIFWSNVVLIGDAAHP 320 (426)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~rv~LvGDAAh~ 320 (426)
.+......... .....+.+.+.+.+..... .. +.... ......+. ....++|..|||+|+|||||.
T Consensus 216 ~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~---~~----~~~~~-~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~ 283 (493)
T PRK08244 216 LIIDPERPQVP----KDEPVTLEELKTSLIRICG---TD----FGLND-PVWMSRFGNATRQAERYRSGRIFLAGDAAHI 283 (493)
T ss_pred EEEcCCccccc----CCCCCCHHHHHHHHHHhhC---CC----CCcCC-eeEEEecccceeeHhhhccCcEEEeecceec
Confidence 55432211100 0111123333322221111 00 00000 11111111 234567888999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324 321 TTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ 381 (426)
Q Consensus 321 ~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 381 (426)
++|++|||+|+||+||.+|+|+|.... +...+.+|++|+++|++++..++..+..+..++.
T Consensus 284 ~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~ 345 (493)
T PRK08244 284 HFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFD 345 (493)
T ss_pred cCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 999999999999999999999998763 3456789999999999999999998887777764
No 26
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.6e-41 Score=326.44 Aligned_cols=363 Identities=16% Similarity=0.168 Sum_probs=222.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCc-ceeccChhHHHHHHHHhcCCchhhhcc-Cccee
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTG-AGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPLT 80 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~ 80 (426)
+.+||+||||||+|+++|+.|+++|++|+|||+.+...... ..+ +.+.++|+++++|+++|+ .+.+.+. ..+..
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~--~~~~~~~~~~~~~ 79 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGA--WSSIVAMRVCPYK 79 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCC--chhhhHhhCCccc
Confidence 35899999999999999999999999999999886321110 111 346899999999999998 4555432 22211
Q ss_pred eccccccccc--cccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 81 IDQNQATDNA--KVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
....+..... .+.......... .+.+.+..|++.|.+.+. .++ +++++++++++.+++ .++++ +++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~v~---~~~g~~ 153 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQL-GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNRVT---LESGAE 153 (384)
T ss_pred eEEEEeCCCceEEecccccCCCcc-EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEEEE---ECCCCE
Confidence 1000000000 111000001111 244566678888887664 367 999999999986443 56666 567764
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCc-ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE 234 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (426)
++||+||+|||.+|++|++++.... ..|..+. .+++.... .+... ..+.++.+.+...++|
T Consensus 154 --~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~---~v~~~~~~------------~~~~~-~~~~~~~~~g~~~~~p 215 (384)
T PRK08849 154 --IEAKWVIGADGANSQVRQLAGIGITAWDYRQHC---MLINVETE------------QPQQD-ITWQQFTPSGPRSFLP 215 (384)
T ss_pred --EEeeEEEEecCCCchhHHhcCCCceeccCCCeE---EEEEEEcC------------CCCCC-EEEEEeCCCCCEEEeE
Confidence 8999999999999999999853322 2233221 12221110 01111 2233344444555678
Q ss_pred ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEe
Q 014324 235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLI 314 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~Lv 314 (426)
++++..++.|+....... . ....+.+...+.+. +.|.+.+..+ . ......+++ ...++++|..+|++|+
T Consensus 216 l~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~---~~~~~~~~~~-~-~~~~~~~~l-~~~~~~~~~~grv~Ll 284 (384)
T PRK08849 216 LCGNQGSLVWYDSPKRIK----Q-LSAMNPEQLRSEIL---RHFPAELGEI-K-VLQHGSFPL-TRRHAQQYVKNNCVLL 284 (384)
T ss_pred cCCCceEEEEECCHHHHH----H-HHcCCHHHHHHHHH---HHhhhhhCcE-E-eccceEeec-cccccchhccCCEEEE
Confidence 877766666654321100 0 00112222222221 2222222211 0 011111221 2345678999999999
Q ss_pred ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCC
Q 014324 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTK 394 (426)
Q Consensus 315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (426)
|||||.|+|+.|||+|+||+||.+|+++|.... .+.+++|+.|+++|+++...++..+..+.++|+...
T Consensus 285 GDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~-~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~---------- 353 (384)
T PRK08849 285 GDAAHTINPLAGQGVNLGFKDVDVLLAETEKQG-VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSL---------- 353 (384)
T ss_pred EcccccCCCCccchHhHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc----------
Confidence 999999999999999999999999999997543 456889999999999999999999998888886531
Q ss_pred CCChhhhHHHhhccCCcccCCCccc
Q 014324 395 TASPQDCQELQQKTMPFFADLPSLV 419 (426)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (426)
.....+++.++.....+|++-
T Consensus 354 ----~~~~~~R~~~l~~~~~~~~~k 374 (384)
T PRK08849 354 ----TPLKFVRNAALKLAENSGPLK 374 (384)
T ss_pred ----hHHHHHHHHHHHHHhccHHHH
Confidence 133444555555555555544
No 27
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=3.6e-41 Score=305.27 Aligned_cols=328 Identities=27% Similarity=0.315 Sum_probs=226.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-cc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-QN 84 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 84 (426)
+.+|+|||||++||++|++|+|.|++|+|+|++..++. .|.++++.-++.++|+.+++ .+.+.+.+.+...+ ..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~---~g~si~L~~ng~~aLkai~~--~e~i~~~gip~~~~v~~ 76 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG---EGTSINLALNGWRALKAIGL--KEQIREQGIPLGGRVLI 76 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc---CCcceeehhhHHHHHHHccc--HHHHHHhcCcccceeee
Confidence 35899999999999999999999999999999888874 36778888889999999996 77888888886654 33
Q ss_pred cccccccccccccccCCC-cchhccHHHHHHHHHhcCCCCeeEeee------eEEEEEEecCCceEEEEEEeccCCceEE
Q 014324 85 QATDNAKVTRTLARDDNF-NFRAAHWADLHGLLYNALPPEIFLRGH------QYLSFCISEVKTTVTVKAKVLQTDEVIE 157 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~~~~~~~i~~~~------~v~~~~~~~~~~~v~v~~~~~~~g~~~~ 157 (426)
+..+|+............ -...+.|..+++.|.++.+.+.|+|+. ....++. ......+. +.+|.+
T Consensus 77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~--~~~~~~v~---l~~g~~-- 149 (420)
T KOG2614|consen 77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIET--LGKKLVVH---LSDGTT-- 149 (420)
T ss_pred ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeee--ccccccee---cCCCcE--
Confidence 444555455554443332 244566778888888888876677775 3332332 12223333 667776
Q ss_pred EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324 158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN 237 (426)
Q Consensus 158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (426)
+++|++|||||++|.||++|+... ++|.+++.|++...++ ...++ ....++..+...+.|..+......|..-+
T Consensus 150 ~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~~~~-~~~~~----~~~vf~~~~~~~~~~~~~~~~~~~y~~~~ 223 (420)
T KOG2614|consen 150 VKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLGFIP-NGIPF----GKKVFAIYGNGLHSWPRPGFHLIAYWFLD 223 (420)
T ss_pred EEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeeeecc-CCCCc----ccceecccCCeEEEcccCCceEEEEEeec
Confidence 899999999999999999996544 8999999999988443 33222 22345555666777776666666666666
Q ss_pred CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcce--EeeeeccCCCCc----cccccE
Q 014324 238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF--INAMYDCDPLKQ----IFWSNV 311 (426)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~----~~~~rv 311 (426)
+...+.++.+.+++ +.+.....+....|...+.++++...... ..++..+.|.+- ...+++
T Consensus 224 k~~t~t~~~~~~e~-------------~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~v 290 (420)
T KOG2614|consen 224 KSLTSTDFAPFDEP-------------EKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNV 290 (420)
T ss_pred CCcccccccCcCCH-------------HHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeE
Confidence 66666655544332 22333333344456666777666554332 222333333321 122789
Q ss_pred EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccc--------c--------HHHHHHHHHHhhhh
Q 014324 312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVE--------G--------LLSALEEYQTVRLP 364 (426)
Q Consensus 312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~--------~--------~~~~L~~Y~~~R~~ 364 (426)
+|+|||||.|.|+.|||+|+||||+.+|+++|.++.++ . .+.+...|..+|+.
T Consensus 291 vL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~ 359 (420)
T KOG2614|consen 291 VLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWR 359 (420)
T ss_pred EEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988531 1 34566666666633
No 28
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=8.2e-41 Score=325.64 Aligned_cols=344 Identities=19% Similarity=0.197 Sum_probs=216.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
.++||+||||||+|+++|+.|+++|++|+||||++.+... ..+.++.++++++++|+++|+ .+.+.....+......
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~g~~~~l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~~ 93 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA-AKGQAYALSLLSARIFEGIGV--WEKILPQIGKFRQIRL 93 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC-CCCcEEEechHHHHHHHHCCh--hhhhHhhcCCccEEEE
Confidence 4689999999999999999999999999999999886532 246788999999999999998 5555554443321111
Q ss_pred cccccccccccc---cccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324 85 QATDNAKVTRTL---ARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 85 ~~~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~ 158 (426)
....+....... ......++...+| .+.+.|.+.+.. ++ +++++++++++.++ ..+++++. .+++..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~--~~~~~~~i 168 (415)
T PRK07364 94 SDADYPGVVKFQPTDLGTEALGYVGEHQ-VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLE--IEGKQQTL 168 (415)
T ss_pred EeCCCCceeeeccccCCCCccEEEEecH-HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEc--cCCcceEE
Confidence 111111110101 0111122233344 677778776643 67 89999999998543 35566532 23333458
Q ss_pred eecEEEeccCCchhhhhhhcCCCcc-cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324 159 KGNLLVAADGCLSSIRQSFLSDFKL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN 237 (426)
Q Consensus 159 ~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (426)
+||+||+|||.+|.+|+++...... .+.. ..+...+..+. +... ..+..+.+.++++++|+++
T Consensus 169 ~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~-~~~~~~~~~g~~~~~p~~~ 232 (415)
T PRK07364 169 QSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SCVTATVKHEA--------------PHND-IAYERFWPSGPFAILPLPG 232 (415)
T ss_pred eeeEEEEeCCCCchhHHHhCCCceeecCCC-EEEEEEEEccC--------------CCCC-EEEEEecCCCCeEEeECCC
Confidence 9999999999999999998543221 1111 22222332221 1011 1111223456788899988
Q ss_pred CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324 238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA 317 (426)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA 317 (426)
+..++.|....+... . ....+.+.+.+.+.+....|.+.+ ........+++. ..+.++|..+|++|+|||
T Consensus 233 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDA 302 (415)
T PRK07364 233 NRCQIVWTAPHAQAK----A-LLALPEAEFLAELQQRYGDQLGKL----ELLGDRFLFPVQ-LMQSDRYVQHRLALVGDA 302 (415)
T ss_pred CCEEEEEECCHHHHH----H-HHCCCHHHHHHHHHHHhhhhhcCc----eecCCCceecch-hhhhhhhcCCcEEEEecc
Confidence 877776654321100 0 001122222222222222221111 111112223322 223567888999999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHHHHHHhhc--ccc--HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEG--LLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~--~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
||.++|+.|||+|+||+||..|+++|.... +.+ ..++|+.|+++|++++..++..++.+.+++..
T Consensus 303 Ah~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~ 371 (415)
T PRK07364 303 AHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSN 371 (415)
T ss_pred cccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998652 122 34899999999999999999999999988864
No 29
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.4e-41 Score=329.71 Aligned_cols=345 Identities=19% Similarity=0.186 Sum_probs=217.6
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC-----CCCCcceeccChhHHHHHHHHhcCCchhhhcc-Ccce
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT-----GSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPL 79 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-----~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~ 79 (426)
++||+||||||+|+++|+.|+++|++|+|||+.+.... .....++..++++++++|+++|+ .+.+.+. ..+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl--~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGA--WDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCCh--hhhhhHhhCccc
Confidence 37999999999999999999999999999999873210 00122457899999999999998 4555432 2222
Q ss_pred eecccccccccccccccccc--CCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 80 TIDQNQATDNAKVTRTLARD--DNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
.....+...+.......... .....+.++|..+.+.|.+.+++ ++ +++++++++++.++ ..++++ +.+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~---~~~g~~ 154 (405)
T PRK05714 80 SEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLT---LADGRQ 154 (405)
T ss_pred eeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEE---ECCCCE
Confidence 11111111111000000001 11123467888999888887764 77 99999999998543 356665 567754
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
++||+||+|||.+|.||++++.... ...+.....+...... .+. ....+..+.+++++.++|+
T Consensus 155 --~~a~~vVgAdG~~S~vR~~lg~~~~--~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~g~~~~~P~ 217 (405)
T PRK05714 155 --LRAPLVVAADGANSAVRRLAGCATR--EWDYLHHAIVTSVRCS------------EPH-RATAWQRFTDDGPLAFLPL 217 (405)
T ss_pred --EEeCEEEEecCCCchhHHhcCCCcc--cccCCceEEEEEEEcC------------CCC-CCEEEEEcCCCCCeEEeeC
Confidence 8999999999999999999854332 2222211111111100 011 1123344567778889998
Q ss_pred cCCe----eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccE
Q 014324 236 LNKR----LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNV 311 (426)
Q Consensus 236 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv 311 (426)
+.+. .++.|....+... . ....+.+. +.+...+.|...+.+++.. .....+++.. .++++|..+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~---~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~rv 287 (405)
T PRK05714 218 ERDGDEHWCSIVWSTTPEEAE----R-LMALDDDA---FCAALERAFEGRLGEVLSA-DPRLCVPLRQ-RHAKRYVEPGL 287 (405)
T ss_pred CCCCCCCeEEEEEECCHHHHH----H-HHCCCHHH---HHHHHHHHHHHHhCCceec-CCccEEecce-eehhhhccCCE
Confidence 6432 2233432211100 0 00011111 1121122233333333322 2223344433 35778999999
Q ss_pred EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cc--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324 312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VE--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA 384 (426)
Q Consensus 312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 384 (426)
+|+|||||.|+|+.|||+|+||+||.+|+++|.... +. ..+.+|+.|+++|++++..++..++.+.++|+.-.
T Consensus 288 ~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~ 364 (405)
T PRK05714 288 ALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADP 364 (405)
T ss_pred EEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999997642 11 24689999999999999999999999999987643
No 30
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=321.58 Aligned_cols=343 Identities=16% Similarity=0.136 Sum_probs=220.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCcceeccChhHHHHHHHHhcCCchhhhccCc-ceeec
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG--SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATV-PLTID 82 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ 82 (426)
++||+||||||+|+++|+.|+++|++|+|+||.+.+... ...|.++.++++++++|+++|+ .+.+..... +....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl--~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA--WDRIPEDEISPLRDA 80 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC--hhhhccccCCccceE
Confidence 589999999999999999999999999999999875321 1356778899999999999998 555544332 21110
Q ss_pred cccccccc-ccccccc-ccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324 83 QNQATDNA-KVTRTLA-RDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE 157 (426)
Q Consensus 83 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~ 157 (426)
........ .+..... .......+.++|..+.+.|.+.+. .++ +++++++++++.+++ .+.|+ +++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~--~~~v~---~~~g~~-- 153 (392)
T PRK09126 81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD--GAQVT---LANGRR-- 153 (392)
T ss_pred EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC--eEEEE---EcCCCE--
Confidence 11111111 1100000 001111245788889888888663 477 999999999985433 45555 466764
Q ss_pred EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324 158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN 237 (426)
Q Consensus 158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (426)
++||+||+|||.+|.+|+.+.........+...+...+.... + .....+.+++++.+++++|.++
T Consensus 154 ~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~P~~~ 218 (392)
T PRK09126 154 LTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--------------P-HHHTAWEWFGYGQTLALLPLNG 218 (392)
T ss_pred EEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--------------C-CCCEEEEEecCCCCeEEeECCC
Confidence 899999999999999999985443333333333332222111 1 1123345567777888999988
Q ss_pred CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324 238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA 317 (426)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA 317 (426)
+..++.+.++.+... . ....+.+.+.+.+. ..|...+..+ ........+++. ..+.++|..+|++|+|||
T Consensus 219 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~---~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDA 288 (392)
T PRK09126 219 HLSSLVLTLPPDQIE----A-LLALDPEAFAAEVT---ARFKGRLGAM-RLVSSRHAYPLV-AVYAHRFVAKRFALIGDA 288 (392)
T ss_pred CCEEEEEECCHHHHH----H-HHcCCHHHHHHHHH---HHHhhhccCe-EEcCCCcEeech-HHHHHHHhhcceEEEehh
Confidence 877766644321100 0 00011111111111 1111111111 111111222322 223467888999999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
||.++|+.|||+|+||+||..|+++|.... ....+++|+.|+++|+++++.++..++.+.+++..
T Consensus 289 Ah~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~ 357 (392)
T PRK09126 289 AVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTD 357 (392)
T ss_pred hhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998753 12357899999999999999999999999888754
No 31
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=1e-39 Score=322.34 Aligned_cols=374 Identities=17% Similarity=0.067 Sum_probs=244.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
..+||+||||||+|+++|+.|+++|++|+|+||...... ....|+.++|++.++|+++|+ .+.+.....+......
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~--~r~~G~~L~p~g~~~L~~LGL--~d~l~~i~~~~~~~~v 107 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP--DRIVGELLQPGGVNALKELGM--EECAEGIGMPCFGYVV 107 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc--chhhhhhcCHHHHHHHHHCCC--hhhHhhcCcceeeeEE
Confidence 568999999999999999999999999999999872111 123567899999999999998 5666655555332222
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcC----CCCe-eEeeeeEEEEEEecCC-----ceEEEEEEeccCC-
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL----PPEI-FLRGHQYLSFCISEVK-----TTVTVKAKVLQTD- 153 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~-i~~~~~v~~~~~~~~~-----~~v~v~~~~~~~g- 153 (426)
...+++... ...........++|..+.+.|.+.+ ..++ +. ..+++++..++.. .+|+++ ..++
T Consensus 108 ~~~~G~~~~--i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~---~~~~~ 181 (567)
T PTZ00367 108 FDHKGKQVK--LPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVEYT---EAEKY 181 (567)
T ss_pred EECCCCEEE--ecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEEEe---cCCcc
Confidence 222233221 1111222345567888888887755 3466 54 5578877543321 134433 2221
Q ss_pred --------------------ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhccc
Q 014324 154 --------------------EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVY 213 (426)
Q Consensus 154 --------------------~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (426)
+..+++||+||+|||.+|++|+++.... +.+.....|.+.+.... ..
T Consensus 182 ~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~------------~l 248 (567)
T PTZ00367 182 DVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNV------------RL 248 (567)
T ss_pred cccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEecc------------cC
Confidence 1235899999999999999999985332 23334455555432211 01
Q ss_pred CCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHh-hhc---
Q 014324 214 PDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI-KET--- 289 (426)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 289 (426)
|..+ ....+++++++++++|++++..++.+.+..+... . ..+..+.+.+...+.+.+.+++.+ +..
T Consensus 249 p~~~-~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p------~---~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~ 318 (567)
T PTZ00367 249 PKEQ-HGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP------S---LEEQSEWLIEDVAPHLPENMRESFIRASKDT 318 (567)
T ss_pred CCCC-eeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC------C---hHHHHHHHHHhhcccCcHHHHHHHHHhhccc
Confidence 1111 2234678899999999998877655544332110 0 011112222222333444454433 211
Q ss_pred CcceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc---------ccHHHHHH----
Q 014324 290 KEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV---------EGLLSALE---- 356 (426)
Q Consensus 290 ~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~---------~~~~~~L~---- 356 (426)
.....++.. ..|..+|..+|++|+|||||+|+|+.|||+|+||+||..|+++|..... .+++++|+
T Consensus 319 ~~l~~~p~~-~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~ 397 (567)
T PTZ00367 319 KRIRSMPNA-RYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAIL 397 (567)
T ss_pred CCeEEeeHh-hCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHH
Confidence 111222222 3344456779999999999999999999999999999999999975320 13467777
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCcccccccc
Q 014324 357 EYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTLC 424 (426)
Q Consensus 357 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (426)
.|++.|++++..++..+..+.++|+.. ...+.|.++++.+..+++|.-+|+..+..
T Consensus 398 ~Y~~~Rk~~a~~i~~ls~aL~~lf~~~------------~lr~~~~~y~~~gg~~~~~p~~ll~g~~~ 453 (567)
T PTZ00367 398 SYARNRKTHASTINILSWALYSVFSSP------------ALRDACLDYFSLGGECVTGPMSLLSGLDP 453 (567)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhChH------------HHHHHHHHHHhcCCccccccHHHHcCCCC
Confidence 999999999999999999999999761 23468999999999999999988876653
No 32
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.7e-41 Score=325.03 Aligned_cols=341 Identities=19% Similarity=0.146 Sum_probs=224.2
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI 81 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (426)
|+|..+||+||||||+|+++|+.|+++|++|+|||+.+.+. ..+++.+.+++.++|+++|+ .+.+.....+...
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~----~~r~~~l~~~s~~~l~~lgl--~~~~~~~~~~~~~ 76 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA----DLRTTALLGPSIRFLERLGL--WARLAPHAAPLQS 76 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC----CcchhhCcHHHHHHHHHhCc--hhhhHhhcceeeE
Confidence 55778999999999999999999999999999999998653 23456788899999999987 4555544433322
Q ss_pred ccccccccccccc---ccc---ccCCCcchhccHHHHHHHHHhcCCC-C-eeEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324 82 DQNQATDNAKVTR---TLA---RDDNFNFRAAHWADLHGLLYNALPP-E-IFLRGHQYLSFCISEVKTTVTVKAKVLQTD 153 (426)
Q Consensus 82 ~~~~~~~~~~~~~---~~~---~~~~~~~~~~~r~~l~~~L~~~~~~-~-~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g 153 (426)
...+...+..+.. ... .......+.+++..+.+.|.+.+.. + +.+++++|++++.++ ..++++ +++|
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~---~~~g 151 (388)
T PRK07494 77 MRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVT---LADG 151 (388)
T ss_pred EEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEE---ECCC
Confidence 1111122221100 000 0111223568899999999987754 3 478899999998543 356665 5566
Q ss_pred ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324 154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY 233 (426)
Q Consensus 154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (426)
++ +++|+||+|||.+|.+|+.+.........+...+...+..+ .+... ....++.+.++..++
T Consensus 152 ~~--~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~--------------~~~~~-~~~~~~~~~g~~~~~ 214 (388)
T PRK07494 152 TT--LSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS--------------RPHQN-VSTEFHTEGGPFTQV 214 (388)
T ss_pred CE--EEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc--------------CCCCC-EEEEEeCCCCcEEEE
Confidence 54 89999999999999999998544433322333333333221 11111 112333466778889
Q ss_pred EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhh---cCcceEeeeeccCCCCcccccc
Q 014324 234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKE---TKEPFINAMYDCDPLKQIFWSN 310 (426)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~r 310 (426)
|++++..+++|+...+.... ....+.+.+.+.+.. .+..++.. ......+++.. ...++|..+|
T Consensus 215 Pl~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~r 281 (388)
T PRK07494 215 PLPGRRSSLVWVVRPAEAER-----LLALSDAALSAAIEE-------RMQSMLGKLTLEPGRQAWPLSG-QVAHRFAAGR 281 (388)
T ss_pred ECCCCcEEEEEECCHHHHHH-----HHcCCHHHHHHHHHH-------HHhhhcCCeEEccCCcEeechH-HHHHhhccCc
Confidence 99888777777654322110 011122222222221 22222221 11223333332 2235688899
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
++|+|||||.++|+.|||+|+||+||..|+++|.... ......+|+.|+++|++++..++..+..+.++|...
T Consensus 282 v~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 355 (388)
T PRK07494 282 TALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD 355 (388)
T ss_pred eEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999998753 234678999999999999998888888888877653
No 33
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-40 Score=323.46 Aligned_cols=334 Identities=18% Similarity=0.214 Sum_probs=212.7
Q ss_pred CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324 3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID 82 (426)
Q Consensus 3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (426)
+...+||+||||||+||++|+.|+++|++|+|+||.+.+.. .+++..++++++++|+.+|+ .+.+...+.+....
T Consensus 2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~---~gra~~l~~~tle~L~~lGl--~~~l~~~~~~~~~~ 76 (487)
T PRK07190 2 STQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE---VGRADALNARTLQLLELVDL--FDELYPLGKPCNTS 76 (487)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc---cccceEeCHHHHHHHHhcCh--HHHHHhhCccceeE
Confidence 34668999999999999999999999999999999998653 56788899999999999988 55555544332211
Q ss_pred cccccccccccccc------cccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324 83 QNQATDNAKVTRTL------ARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE 154 (426)
Q Consensus 83 ~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~ 154 (426)
. .+.++..+.... .......+..+.+..+++.|.+.+. .|+ ++++++|++++.+++ .++++ ..+|+
T Consensus 77 ~-~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~v~---~~~g~ 150 (487)
T PRK07190 77 S-VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCLTT---LSNGE 150 (487)
T ss_pred E-EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeEEE---ECCCc
Confidence 1 111222111100 0011112345788999999988765 478 999999999986544 45554 34565
Q ss_pred eEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE
Q 014324 155 VIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE 234 (426)
Q Consensus 155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (426)
+++|++||+|||.+|.||+++.......... ..| .+++... ..++|.......+ ..+.+.++.+|
T Consensus 151 --~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~-~~~-~~~d~~~----------~~~~~~~~~~~~~-~~~~g~~~~~p 215 (487)
T PRK07190 151 --RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQ-IIW-AVIDGVI----------DTDFPKVPEIIVF-QAETSDVAWIP 215 (487)
T ss_pred --EEEeCEEEECCCCCHHHHHHcCCCccccccc-eeE-EEEEEEE----------ccCCCCCcceEEE-EcCCCCEEEEE
Confidence 4899999999999999999985443322111 111 2221110 0011211111112 23445566677
Q ss_pred ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeee--ccCCCCccc-cccE
Q 014324 235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMY--DCDPLKQIF-WSNV 311 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~-~~rv 311 (426)
.+++...+ +...+.. ..+.+.+.+.+......+. + . +. ....+..+ .....++|. .|||
T Consensus 216 ~~~~~~r~--~~~~~~~---------~~t~~~~~~~l~~~~~~~~--~-~-~~---~~~w~s~~~~~~r~a~~~r~~gRV 277 (487)
T PRK07190 216 REGEIDRF--YVRMDTK---------DFTLEQAIAKINHAMQPHR--L-G-FK---EIVWFSQFSVKESVAEHFFIQDRI 277 (487)
T ss_pred CCCCEEEE--EEEcCCC---------CCCHHHHHHHHHHhcCCCC--C-c-eE---EEEEEEEeeeCcEehhhcCcCCcE
Confidence 76554432 2221110 1122222222221111110 0 0 00 01111111 133356676 6999
Q ss_pred EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324 312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK 380 (426)
Q Consensus 312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~ 380 (426)
+|+|||||.++|++|||||++|+||.+|+|+|+.. .+...+..|++|+.+|+++++.++..++.+.++.
T Consensus 278 ~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 278 FLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred EEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999876 2345689999999999999999999999887755
No 34
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=8.2e-41 Score=322.83 Aligned_cols=372 Identities=17% Similarity=0.196 Sum_probs=234.0
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCcceeccChhHHHHHHHHhcCCchhhhcc-Cc
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TV 77 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~ 77 (426)
||.+..+||+||||||+|+++|+.|+++|++|+|+||.+.+.... ...+.+.++|+++++|+++|+ .+.+.+. ..
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl--~~~~~~~~~~ 78 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGV--WPAVRAARAQ 78 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCc--hhhhhHhhCC
Confidence 777888999999999999999999999999999999998654211 112456799999999999998 4555432 22
Q ss_pred ceeeccccccccc-ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324 78 PLTIDQNQATDNA-KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTD 153 (426)
Q Consensus 78 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g 153 (426)
+......+...+. ....... .......+.++|..|.+.|.+.+++ ++ +++++++++++.++ ..++++ +++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~---~~~g 153 (392)
T PRK08773 79 PYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLR---LDDG 153 (392)
T ss_pred cccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEE---ECCC
Confidence 2211111111111 1110000 0111123567889999999887764 77 99999999998543 356665 5566
Q ss_pred ceEEEeecEEEeccCCchhhhhhhcCCCc-ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEE
Q 014324 154 EVIEIKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF 232 (426)
Q Consensus 154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (426)
++ +++|+||+|||.+|.+|+.+..... ..+..... ...++.+ .|... ..+..+.+++.+.+
T Consensus 154 ~~--~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~v~~~--------------~~~~~-~~~~~~~~~g~~~~ 215 (392)
T PRK08773 154 RR--LEAALAIAADGAASTLRELAGLPVSRHDYAQRGV-VAFVDTE--------------HPHQA-TAWQRFLPTGPLAL 215 (392)
T ss_pred CE--EEeCEEEEecCCCchHHHhhcCCceEEEeccEEE-EEEEEcc--------------CCCCC-EEEEEeCCCCcEEE
Confidence 64 8999999999999999998743332 11222111 1112211 11111 22334456677888
Q ss_pred EEecCCeeeEEEEEecCCCCcCCCcceeccCH-HHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccE
Q 014324 233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSN-DMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNV 311 (426)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv 311 (426)
+|.+++..+++|.++..... . ....+. +..+++.+ . +.+.+..+ ........+++. ..++++|..+|+
T Consensus 216 lP~~~~~~~~~w~~~~~~~~----~-~~~~~~~~~~~~l~~-~---~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~rv 284 (392)
T PRK08773 216 LPFADGRSSIVWTLPDAEAE----R-VLALDEAAFSRELTQ-A---FAARLGEV-RVASPRTAFPLR-RQLVQQYVSGRV 284 (392)
T ss_pred EECCCCceEEEEECCHHHHH----H-HHcCCHHHHHHHHHH-H---HhhhhcCe-EecCCccEeech-hhhhhhhcCCcE
Confidence 99988887777765422110 0 000111 11222211 1 11111111 111111222332 345678899999
Q ss_pred EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCC
Q 014324 312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPD 387 (426)
Q Consensus 312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (426)
+|+|||||.++|+.|||+|+||+||..|+++|.+.. ....+.+|+.|+++|+++...+......+.++|.+-.
T Consensus 285 ~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~--- 361 (392)
T PRK08773 285 LTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDE--- 361 (392)
T ss_pred EEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---
Confidence 999999999999999999999999999999998752 1234689999999999998777776677777776531
Q ss_pred CCCCCCCCCChhhhHHHhhccCCcccCCCcccccc
Q 014324 388 REPFNTKTASPQDCQELQQKTMPFFADLPSLVDST 422 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (426)
.....+++.++.++..+|++...+
T Consensus 362 -----------~~~~~~r~~~l~~~~~~~~~k~~~ 385 (392)
T PRK08773 362 -----------MHLTLLRGSVLGLAGKLPPLVDAL 385 (392)
T ss_pred -----------hHHHHHHHHHHHHHhhCHHHHHHH
Confidence 244455555555666666655443
No 35
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=3.8e-40 Score=319.84 Aligned_cols=342 Identities=20% Similarity=0.165 Sum_probs=221.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
+||+||||||+||++|+.|+++| ++|+|+||.+..... ..++++.++++++++|+++|+ .+.+...+.+......
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~-~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~~ 78 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWS-RDPRASAIAAAARRMLEALGV--WDEIAPEAQPITDMVI 78 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC-CCcceEEecHHHHHHHHHCCC--hhhhhhhcCcccEEEE
Confidence 79999999999999999999996 999999999864321 246789999999999999998 5666555443321111
Q ss_pred ccccc-cccccc-cc----ccCCCc-chhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 85 QATDN-AKVTRT-LA----RDDNFN-FRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 85 ~~~~~-~~~~~~-~~----~~~~~~-~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
....+ ...... .. .....+ .+.++|..+++.|.+.+.+ ++ ++++++|++++.++ ..+.++ +++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~---~~~g~~ 153 (403)
T PRK07333 79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVT---LSDGSV 153 (403)
T ss_pred EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEE---ECCCCE
Confidence 11111 110000 00 011122 2468999999999987764 78 99999999998543 356665 566764
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (426)
+++|+||+|||.+|.+|+.+.........+...+...+.... +. ......++.++++.+++|+
T Consensus 154 --~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~g~~~~~Pl 216 (403)
T PRK07333 154 --LEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER--------------PH-GGRAEEHFLPAGPFAILPL 216 (403)
T ss_pred --EEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC--------------CC-CCEEEEEeCCCCceEEeEC
Confidence 899999999999999999975433222222222333332221 11 1122334457777888999
Q ss_pred cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEec
Q 014324 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIG 315 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvG 315 (426)
+++..++.|........ ... ..+.+...+.+...+..|.+.+ ........+.. ...++++|..+|++|||
T Consensus 217 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~grv~LvG 286 (403)
T PRK07333 217 KGNRSSLVWTERTADAE----RLV-ALDDLVFEAELEQRFGHRLGEL----KVLGKRRAFPL-GLTLARSFVAPRFALVG 286 (403)
T ss_pred CCCCeEEEEECCHHHHH----HHH-CCCHHHHHHHHHHHhhhhcCce----EeccCccEeec-hhhhhhhccCCCEEEEe
Confidence 88887766543211000 000 0011111111111111111111 00111111222 13356678889999999
Q ss_pred cccccCCCCCcchhhhhHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV----EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~----~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
||||.++|+.|||+|+||+||.+|+++|..... ...+.+|+.|+++|+++.+.++..++.+.++++..
T Consensus 287 DAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~ 358 (403)
T PRK07333 287 DAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND 358 (403)
T ss_pred chhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987631 24689999999999999999999999999888653
No 36
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-40 Score=315.61 Aligned_cols=341 Identities=14% Similarity=0.131 Sum_probs=218.3
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcC----CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAG----WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL 79 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G----~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (426)
.+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.+... ...+++.++++++++|+++|+. +. ...+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~-~~~r~~~l~~~~~~~L~~lg~~--~~---~~~~~ 82 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASA-NDPRAIALSHGSRVLLETLGAW--PA---DATPI 82 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCC-CCceEEEecHHHHHHHHhCCCc--hh---cCCcc
Confidence 35689999999999999999999987 469999998754321 2346899999999999999972 22 12221
Q ss_pred eecccc--ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCc-
Q 014324 80 TIDQNQ--ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE- 154 (426)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~- 154 (426)
...... ...+...............+.++|..|++.|.+.+.+ ++ +++++++++++. +...|+++ +.+++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~--~~~~v~v~---~~~~~g 157 (398)
T PRK06996 83 EHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ--DADGVTLA---LGTPQG 157 (398)
T ss_pred cEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee--cCCeEEEE---ECCCCc
Confidence 110001 0111110000111111224578999999999998765 67 999999999974 34467766 44332
Q ss_pred eEEEeecEEEeccCC-chhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324 155 VIEIKGNLLVAADGC-LSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY 233 (426)
Q Consensus 155 ~~~~~~d~vI~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (426)
..+++||+||+|||. +|.+|+.++......+.+...+++.++.+.. ..+ ..+..+.+.+++.++
T Consensus 158 ~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~--------------~~~-~~~~~~~~~G~~~~l 222 (398)
T PRK06996 158 ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAP--------------RPG-WAWERFTHEGPLALL 222 (398)
T ss_pred ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCC--------------CCC-EEEEEecCCCCeEEe
Confidence 135999999999997 5788888765555555555666666654321 111 112223456667778
Q ss_pred EecCCe---eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccccc
Q 014324 234 ELLNKR---LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN 310 (426)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r 310 (426)
|.+++. .+++|....+... . ....+.+...+.+... +...+..+.. ......+.+. ....++|..+|
T Consensus 223 p~~~~~~~~~~~v~~~~~~~~~----~-~~~~~~~~~~~~l~~~---~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~gr 292 (398)
T PRK06996 223 PLGGPRQADYALVWCCAPDEAA----R-RAALPDDAFLAELGAA---FGTRMGRFTR-IAGRHAFPLG-LNAARTLVNGR 292 (398)
T ss_pred ECCCCCCCcEEEEEECCHHHHH----H-HHcCCHHHHHHHHHHH---hccccCceEE-ecceEEEeee-cccccceecCC
Confidence 887654 5555554321100 0 0001111222212211 2222211111 1111112222 33456788899
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|+|+|||||.++|+.|||+|+||+||.+|+++|... ...+.+|+.|+++|++++..++..+..+.++|+.
T Consensus 293 v~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~--~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~ 362 (398)
T PRK06996 293 IAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH--GATPLALATFAARRALDRRVTIGATDLLPRLFTV 362 (398)
T ss_pred EEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999763 2456789999999999999999999999999875
No 37
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-39 Score=327.12 Aligned_cols=338 Identities=17% Similarity=0.198 Sum_probs=214.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
..+||+||||||+||++|+.|+++|++|+||||++.+.. .++++.++++++++|+++|+ .+.+.+.+.+......
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~---~~ra~~l~~~~~~~l~~lGl--~~~l~~~~~~~~~~~~ 96 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST---GSRAICFAKRSLEIFDRLGC--GERMVDKGVSWNVGKV 96 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC---CCeEEEEcHHHHHHHHHcCC--cHHHHhhCceeeceeE
Confidence 567999999999999999999999999999999987643 45788999999999999998 5666555543221111
Q ss_pred ccccccccccccc--ccCC-CcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324 85 QATDNAKVTRTLA--RDDN-FNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 85 ~~~~~~~~~~~~~--~~~~-~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~ 158 (426)
...++........ .... ..+..+.|..+++.|.+.+.+ ++ +++++++++++.+++ .++++++ ..+|+ .++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~v~v~~~-~~~g~-~~i 172 (547)
T PRK08132 97 FLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD--GVTLTVE-TPDGP-YTL 172 (547)
T ss_pred EeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--EEEEEEE-CCCCc-EEE
Confidence 1111111110000 1111 123457889999999987653 57 999999999986544 5555543 23443 358
Q ss_pred eecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe--cCCCceEEEEEe
Q 014324 159 KGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD--LASGTHSVFYEL 235 (426)
Q Consensus 159 ~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 235 (426)
++|+||+|||.+|.||+.+..+.... +..... ...+..+. .++... ..++. ..++..+++++.
T Consensus 173 ~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~-~~d~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (547)
T PRK08132 173 EADWVIACDGARSPLREMLGLEFEGRTFEDRFL-IADVKMKA------------DFPTER-WFWFDPPFHPGQSVLLHRQ 238 (547)
T ss_pred EeCEEEECCCCCcHHHHHcCCCCCCccccceEE-EEEEEecC------------CCCCee-eEEEeccCCCCcEEEEEeC
Confidence 99999999999999999985433221 211111 11111110 111111 11111 134445555555
Q ss_pred cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEe-ee--eccCCCCccccccE
Q 014324 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFIN-AM--YDCDPLKQIFWSNV 311 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~p~~~~~~~rv 311 (426)
+++...+ .+........ ......+ .|.+.+.+++..... ...| .. ....++++|..|||
T Consensus 239 ~~~~~~~--~~~~~~~~~~----~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV 301 (547)
T PRK08132 239 PDNVWRI--DFQLGWDADP----EAEKKPE-----------NVIPRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRV 301 (547)
T ss_pred CCCeEEE--EEecCCCCCc----hhhcCHH-----------HHHHHHHHHcCCCCCeeEEEEEeeeeeeeeecccccccE
Confidence 5543332 2222111000 0000111 122334444432111 1122 11 22456778999999
Q ss_pred EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
+|+|||||.|+|++|||+|+||+||.+|+|+|+.. .+...+++|++|+++|+++++.+++.+..+..++..
T Consensus 302 ~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~ 373 (547)
T PRK08132 302 LFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITP 373 (547)
T ss_pred EEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999875 334578999999999999999999998888777654
No 38
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=2.2e-40 Score=319.26 Aligned_cols=340 Identities=19% Similarity=0.199 Sum_probs=221.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCC-CCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGS-PTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
||+||||||+|+++|+.|+++| ++|+|+||.+.+.... ..++++.++|+++++|+++|+ .+.+...+.+.......
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~~~~~~~~ 78 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGL--WPKLAPFATPILDIHVS 78 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCC--hhhhHhhcCccceEEEE
Confidence 7999999999999999999999 9999999998875421 114678999999999999998 55555444432211111
Q ss_pred ccc--cccccccccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324 86 ATD--NAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG 160 (426)
Q Consensus 86 ~~~--~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~ 160 (426)
... +...............+.++|..|.+.|.+.+.. ++ +++++++++++.++ ..++++ +++|++ ++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~a 151 (382)
T TIGR01984 79 DQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVT---LDNGQQ--LRA 151 (382)
T ss_pred cCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEE---ECCCCE--EEe
Confidence 110 1100000001111223568999999999997764 77 89999999998544 356665 456664 899
Q ss_pred cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC-e
Q 014324 161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK-R 239 (426)
Q Consensus 161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (426)
|+||+|||.+|.+|+.+.........+...+...++.+.. ... .....+.+++.+.++|.+++ .
T Consensus 152 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~g~~~~~p~~~~~~ 216 (382)
T TIGR01984 152 KLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQP--------------HQG-CAFERFTPHGPLALLPLKDNYR 216 (382)
T ss_pred eEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCC--------------CCC-EEEEeeCCCCCeEECcCCCCCC
Confidence 9999999999999999864443333334444444433211 111 11123345556777888777 5
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHH-HHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSND-MIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA 318 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA 318 (426)
.++.|..+.+... . ....+.+ ..+++ .+.|.+.+..+. .......+... ....++|..+|++|+||||
T Consensus 217 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAA 285 (382)
T TIGR01984 217 SSLVWCLPSKQAD----T-IANLPDAEFLAEL----QQAFGWRLGKIT-QVGERKTYPLK-LRIAETHVHPRVVLIGNAA 285 (382)
T ss_pred EEEEEECCHHHHH----H-HHcCCHHHHHHHH----HHHHhhhccCeE-EcCCccEeecc-hhhhhheecCCEEEEeecc
Confidence 5555543221100 0 0011121 12222 222322222211 11122223332 2345678889999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|.++|+.|||+|+||+||..|+++|.... ....+++|+.|+++|++++..++..+..+.+++..
T Consensus 286 h~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~ 350 (382)
T TIGR01984 286 QTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSN 350 (382)
T ss_pred cccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998763 23457899999999999999999999999888754
No 39
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=314.12 Aligned_cols=349 Identities=20% Similarity=0.143 Sum_probs=225.9
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT 80 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (426)
||...++||+||||||+|+++|+.|+++|++|+|+|+.+.+.. ..++..+++.+.++|+++|+ .+.+.+......
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~---~~r~~~l~~~s~~~L~~lG~--~~~~~~~~~~~~ 75 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR---DFRGDTVHPSTLELMDELGL--LERFLELPHQKV 75 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc---cccCceeChhHHHHHHHcCC--hhHHhhccccee
Confidence 7777889999999999999999999999999999999876532 33577899999999999998 455544332111
Q ss_pred eccccccccccccccc--cccCCCc-chhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324 81 IDQNQATDNAKVTRTL--ARDDNFN-FRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE 154 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~ 154 (426)
.....+..+....... ......+ ...+.+..+.+.|.+.+. .++ ++++++++++..+++. .+.+++. ..+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~-v~~v~~~-~~~g~ 153 (407)
T PRK06185 76 RTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGR-VTGVRAR-TPDGP 153 (407)
T ss_pred eeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCE-EEEEEEE-cCCCc
Confidence 1111112222111100 0111112 245778889998888664 367 9999999999865432 2223322 34554
Q ss_pred eEEEeecEEEeccCCchhhhhhhcCCCcc-cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324 155 VIEIKGNLLVAADGCLSSIRQSFLSDFKL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY 233 (426)
Q Consensus 155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (426)
.+++||+||+|||.+|.+|+.+...... .+.....+ ..++.+. +. ....+.++.++++++++
T Consensus 154 -~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~-~~~~~~~--------------~~-~~~~~~~~~~~g~~~ll 216 (407)
T PRK06185 154 -GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLW-FRLPREP--------------DD-PESLMGRFGPGQGLIMI 216 (407)
T ss_pred -EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEE-EecCCCC--------------CC-CcccceEecCCcEEEEE
Confidence 3589999999999999999998544322 22233222 1111110 00 01123356777888888
Q ss_pred EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcc---eEeeeeccCCCCcccccc
Q 014324 234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP---FINAMYDCDPLKQIFWSN 310 (426)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~r 310 (426)
|.+ +..+++|..+..... . . .....+.+.+.. ..+.|.+.+.+...... ...++. ...+++|..+|
T Consensus 217 P~~-~~~~i~~~~~~~~~~----~-~---~~~~~~~~~~~~-~~~~p~~~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~r 285 (407)
T PRK06185 217 DRG-DYWQCGYVIPKGGYA----A-L---RAAGLEAFRERV-AELAPELADRVAELKSWDDVKLLDVR-VDRLRRWHRPG 285 (407)
T ss_pred cCC-CeEEEEEEecCCCch----h-h---hhhhHHHHHHHH-HHhCccHHHHHhhcCCccccEEEEEe-ccccccccCCC
Confidence 886 667777766432211 0 0 111122222221 12333343333322211 122221 34566788899
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA 384 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 384 (426)
++|+|||||.++|+.|||+|+||+||..|++.|.... .+..+..|+.|+++|+++...++..+..+.++|....
T Consensus 286 v~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 361 (407)
T PRK06185 286 LLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPA 361 (407)
T ss_pred eEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999998752 2234589999999999999999999999999886643
No 40
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=320.35 Aligned_cols=334 Identities=18% Similarity=0.147 Sum_probs=210.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
|.++||+||||||+|+++|+.|+++|++|+|+||.+.+... ..++..++++++++|+++|+ .+.+.+.+......
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~--~~Ra~~l~~~s~~~L~~lGl--~~~l~~~~~~~~~~- 75 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV--GSRAGGLHARTLEVLDQRGI--ADRFLAQGQVAQVT- 75 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC--CcceeeECHHHHHHHHHcCc--HHHHHhcCCccccc-
Confidence 35589999999999999999999999999999999875421 22567799999999999998 56665543332110
Q ss_pred ccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
.+ ....+..............+.+..+++.|.+.+.+ ++ +++++++++++.++ ..++++ +.+|+ ++++|
T Consensus 76 -~~-~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~---~~~g~--~i~a~ 146 (488)
T PRK06834 76 -GF-AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVE---LSDGR--TLRAQ 146 (488)
T ss_pred -ee-eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEE---ECCCC--EEEeC
Confidence 00 00001000000111123457788999999987764 77 99999999998644 356665 45665 48999
Q ss_pred EEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec-CCee
Q 014324 162 LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL-NKRL 240 (426)
Q Consensus 162 ~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 240 (426)
+||+|||.+|.+|+++....... .+.....+.++..... +..+ ....+.+...+.|.+ ++..
T Consensus 147 ~vVgADG~~S~vR~~lgi~~~g~--~~~~~~~~~dv~~~~~-----------~~~~----~~~~~~g~~~~~~~~~~~~~ 209 (488)
T PRK06834 147 YLVGCDGGRSLVRKAAGIDFPGW--DPTTSYLIAEVEMTEE-----------PEWG----VHRDALGIHAFGRLEDEGPV 209 (488)
T ss_pred EEEEecCCCCCcHhhcCCCCCCC--CcceEEEEEEEEecCC-----------CCcc----eeeCCCceEEEeccCCCCeE
Confidence 99999999999999985333211 1111112222211000 1000 122333444455554 4455
Q ss_pred eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccccc
Q 014324 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP 320 (426)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~ 320 (426)
++.+....+ .. ....+.+.+.+.+... +...+.. ................++|..|||+|+|||||.
T Consensus 210 ~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~---~g~~~~~---~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~ 276 (488)
T PRK06834 210 RVMVTEKQV--GA-----TGEPTLDDLREALIAV---YGTDYGI---HSPTWISRFTDMARQAASYRDGRVLLAGDAAHV 276 (488)
T ss_pred EEEEecCCC--CC-----CCCCCHHHHHHHHHHh---hCCCCcc---ccceeEEeccccceecccccCCcEEEEeecccc
Confidence 555443211 10 1112333333322221 1111110 000111101111344678889999999999999
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324 321 TTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ 381 (426)
Q Consensus 321 ~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 381 (426)
|+|++|||||+||+||.+|+|+|+.. .+...+.+|++|+++|++++..++..+..+..++.
T Consensus 277 ~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~ 338 (488)
T PRK06834 277 HSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVALLR 338 (488)
T ss_pred CCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999886 33467899999999999999999988877766553
No 41
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=1.1e-39 Score=314.88 Aligned_cols=341 Identities=18% Similarity=0.162 Sum_probs=221.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCcceeccChhHHHHHHHHhcCCchhhhc-cCcceeeccc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTGAGLGLDRPAQRIIQSWLNGRPHLLHL-ATVPLTIDQN 84 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 84 (426)
||+||||||+|+++|+.|+++|++|+||||++.++... ..++++.+++++.++|+++|+ .+.+.+ ...+......
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGV--WDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCc--hhhhhhhcCCCceEEEE
Confidence 79999999999999999999999999999999875321 135778999999999999998 556555 4433222111
Q ss_pred cccccc-ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324 85 QATDNA-KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK 159 (426)
Q Consensus 85 ~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~ 159 (426)
+...+. .+..... .......+.++|..+.+.|.+.+.+ + + ++++++|++++.++ ..++++ +++|+. ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~ 151 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELT---LDDGQQ--LR 151 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEE---ECCCCE--EE
Confidence 111111 1111000 0111223568899999999987754 5 6 99999999998543 356665 567765 89
Q ss_pred ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324 160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (426)
+|+||+|||.+|.+|+++.........+...+...+..+.. . ....+.++.++++++++|++++.
T Consensus 152 ~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~g~~~~~p~~~~~ 216 (385)
T TIGR01988 152 ARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERP--------------H-QGTAWERFTPTGPLALLPLPDNR 216 (385)
T ss_pred eeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCC--------------C-CCEEEEEecCCCCEEEeECCCCC
Confidence 99999999999999999854332221122233333332211 0 11112233456678889998887
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAH 319 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh 319 (426)
.++.|......... ....+.+.+.+.+.+. +.+...++ ........+++. ..+.++|..+|++|+|||||
T Consensus 217 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~v~LiGDAah 286 (385)
T TIGR01988 217 SSLVWTLPPEEAER-----LLALSDEEFLAELQRA---FGSRLGAI-TLVGERHAFPLS-LTHAKRYVAPRLALIGDAAH 286 (385)
T ss_pred eEEEEECCHHHHHH-----HHcCCHHHHHHHHHHH---HhhhcCce-EeccCcceeech-hhhhhheecCceEEEecccc
Confidence 77776653211000 0001122122212211 11111111 111112222222 23456788899999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 320 PTTPHGLRSTNMSILDAMVLGKSLEKWGV----EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 320 ~~~P~~G~G~~~ai~Da~~La~~L~~~~~----~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
.|+|+.|||+|+||+||..|+++|..... ...+.+|+.|+++|+++++.++..++.+.+++..
T Consensus 287 ~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~ 353 (385)
T TIGR01988 287 TIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSN 353 (385)
T ss_pred cCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999987521 1347999999999999999999999999988764
No 42
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.5e-39 Score=314.21 Aligned_cols=343 Identities=17% Similarity=0.156 Sum_probs=215.5
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCcceeccChhHHHHHHHHhcCCchhhhcc-Ccce
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS---PTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPL 79 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~ 79 (426)
.+.+||+||||||+|+++|+.|+++|++|+|||+.+.+.... ...+...+++++.++|+++|+ .+.+... ..+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~ 80 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGV--WDAVQAMRSHPY 80 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCC--hhhhhhhhCccc
Confidence 366999999999999999999999999999999986533211 112456899999999999998 4444432 1221
Q ss_pred e-eccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 80 T-IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
. .....+..+...............+.++|..+++.|.+.+. .++ +++++++++++.+++ .+.++ +.+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~---~~~g~~ 155 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD--GWELT---LADGEE 155 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC--eEEEE---ECCCCE
Confidence 1 11111111111000000011112346889999999988764 377 889999999985433 45555 456654
Q ss_pred EEEeecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE
Q 014324 156 IEIKGNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE 234 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (426)
++||+||+|||.+|++|+.+..+. ...|.... +...+..+. +... ..+..+.+.+...++|
T Consensus 156 --~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~-~~~~~~~~~--------------~~~~-~~~~~~~~~g~~~~~p 217 (391)
T PRK08020 156 --IQAKLVIGADGANSQVRQMAGIGVHGWQYRQSC-MLISVKCEN--------------PPGD-STWQQFTPSGPRAFLP 217 (391)
T ss_pred --EEeCEEEEeCCCCchhHHHcCCCccccCCCceE-EEEEEEecC--------------CCCC-EEEEEEcCCCCEEEeE
Confidence 899999999999999999985433 23344332 222232221 1111 1222333444556678
Q ss_pred ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEe
Q 014324 235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLI 314 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~Lv 314 (426)
+.++..+++|+....... . ....+.+. +.+.....|.+.+.++... ....+++. ..+.++|..+|++|+
T Consensus 218 ~~~~~~~~v~~~~~~~~~----~-~~~~~~~~---~~~~l~~~~~~~~~~~~~~--~~~~~pl~-~~~~~~~~~~rv~Lv 286 (391)
T PRK08020 218 LFDNWASLVWYDSPARIR----Q-LQAMSMAQ---LQQEIAAHFPARLGAVTPV--AAGAFPLT-RRHALQYVQPGLALV 286 (391)
T ss_pred CCCCcEEEEEECCHHHHH----H-HHCCCHHH---HHHHHHHHhhhhccceEec--cccEeecc-eeehhhhccCcEEEE
Confidence 877766776654321100 0 00112222 2222222333333222111 11122222 234677889999999
Q ss_pred ccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cc--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VE--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|||||.++|+.|||+|+||+||..|+++|.+.. .. ..+.+|+.|+++|+++...++..+..+.++|+.
T Consensus 287 GDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~ 358 (391)
T PRK08020 287 GDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSN 358 (391)
T ss_pred echhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998752 11 356899999999999998888888888888765
No 43
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.1e-38 Score=308.94 Aligned_cols=344 Identities=19% Similarity=0.188 Sum_probs=218.5
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCCCC--CCCcceeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPPTG--SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP 78 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (426)
|+++||+||||||+|+++|+.|+++ |++|+||||....... ...++++.+.++++++|+++|+ .+.+.+.+.+
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~ 78 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGV--WQALADCATP 78 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCC--hhhhHhhcCC
Confidence 4568999999999999999999998 9999999996432110 1134688999999999999998 5666554443
Q ss_pred eeecccccccccccc-ccccccC--CCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccC
Q 014324 79 LTIDQNQATDNAKVT-RTLARDD--NFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQT 152 (426)
Q Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~ 152 (426)
...... ...+.... ....... ....+.++|..+.+.|.+.+. .++ ++++++++++..+ +..++++ +++
T Consensus 79 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~--~~~~~v~---~~~ 152 (395)
T PRK05732 79 ITHIHV-SDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT--QGSVRVT---LDD 152 (395)
T ss_pred ccEEEE-ecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc--CCeEEEE---ECC
Confidence 221111 11111000 0000011 111245788899999888664 367 8999999999753 3456665 456
Q ss_pred CceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEE
Q 014324 153 DEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF 232 (426)
Q Consensus 153 g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (426)
|.. +++|+||+|||.+|.+|+.+..+....+.+...+...+..... ..+. .+..+.+++++.+
T Consensus 153 g~~--~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~g~~~~ 215 (395)
T PRK05732 153 GET--LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA--------------HQGR-AFERFTEHGPLAL 215 (395)
T ss_pred CCE--EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC--------------CCCE-EEEeecCCCCEEE
Confidence 654 8999999999999999999865444443344444444432211 0111 1122345556778
Q ss_pred EEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEE
Q 014324 233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVV 312 (426)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~ 312 (426)
+|.+++...+.|+++.+... ........+..+.+... +...+..+.. ......+.+. ....++|..+|++
T Consensus 216 ~p~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~grv~ 285 (395)
T PRK05732 216 LPMSDGRCSLVWCHPLEDAE----EVLSWSDAQFLAELQQA----FGWRLGRITH-AGKRSAYPLA-LVTAAQQISHRLA 285 (395)
T ss_pred eECCCCCeEEEEECCHHHHH----HHHcCCHHHHHHHHHHH----HHhhhcceee-cCCcceeccc-ccchhhhccCcEE
Confidence 89888887777765432110 00000112222222221 1111111111 1111112221 2234568889999
Q ss_pred EeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc---c-ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG---V-EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~---~-~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|+|||||.++|+.|||+|+||+||.+|+++|.... . ...+++|+.|+++|++++..++..++.+.+++..
T Consensus 286 LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 359 (395)
T PRK05732 286 LVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFAN 359 (395)
T ss_pred EEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999996542 1 1245899999999999999999999999988854
No 44
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=304.91 Aligned_cols=341 Identities=18% Similarity=0.182 Sum_probs=216.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCcceeccChhHHHHHHHHhcCCchhhhccC-cceeec
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTGAGLGLDRPAQRIIQSWLNGRPHLLHLAT-VPLTID 82 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 82 (426)
++||+||||||+|+++|+.|++.|++|+|+||.+.+.... ...+.+.++++++++|+++|+ .+.+.... .+....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~--~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGV--WQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCc--hhhhhhhcCCcceEE
Confidence 5799999999999999999999999999999998865311 122458899999999999987 44443222 121111
Q ss_pred ccccccccccccc-ccccCCCcchhccHHHHHHHHHhcCCC-C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324 83 QNQATDNAKVTRT-LARDDNFNFRAAHWADLHGLLYNALPP-E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~~-~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~ 158 (426)
.........+... .........+.++|..+++.|.+.+++ + + ++ ++++++++..+ ..+.++ +.+|++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~---~~~g~~--~ 154 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLT---LADGQV--L 154 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEE---ECCCCE--E
Confidence 1111111111100 001111223568899999999887754 5 6 66 99999987543 356665 456654 8
Q ss_pred eecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324 159 KGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN 237 (426)
Q Consensus 159 ~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (426)
+||+||+|||.+|.+|+.+....... +.. ..+...+..+. +. ....+.++.++++++++|+++
T Consensus 155 ~a~~vI~adG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~p~~~ 218 (388)
T PRK07608 155 RADLVVGADGAHSWVRSQAGIKAERRPYRQ-TGVVANFKAER--------------PH-RGTAYQWFRDDGILALLPLPD 218 (388)
T ss_pred EeeEEEEeCCCCchHHHhcCCCccccccCC-EEEEEEEEecC--------------CC-CCEEEEEecCCCCEEEeECCC
Confidence 99999999999999999985433222 211 11222222111 11 113345567888889999998
Q ss_pred CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324 238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA 317 (426)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA 317 (426)
+...+.|....+... . ....+.+.+.+.+..... ..+.. +........+++. ..+++.|..+|++|+|||
T Consensus 219 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~rv~liGDA 288 (388)
T PRK07608 219 GHVSMVWSARTAHAD----E-LLALSPEALAARVERASG---GRLGR-LECVTPAAGFPLR-LQRVDRLVAPRVALVGDA 288 (388)
T ss_pred CCeEEEEECCHHHHH----H-HHCCCHHHHHHHHHHHHH---HhcCC-ceecCCcceeecc-hhhhhhhhcCceEEEecc
Confidence 877665544221100 0 000122222222221111 01111 1111111122221 234567888999999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG---VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~---~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
||.|+|+.|||+|+||+||.+|+++|.... .....++|+.|+++|+++++.++..++.+.+++..
T Consensus 289 Ah~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~ 356 (388)
T PRK07608 289 AHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFAL 356 (388)
T ss_pred ccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998653 12345899999999999999999999999988864
No 45
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=2e-33 Score=289.81 Aligned_cols=326 Identities=17% Similarity=0.174 Sum_probs=205.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
++|+|||||||||++|+.|+++ |++|+|+||++... ..|+|+.+++++++.|..++....+.+......... ..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~---~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~-~~ 76 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD---TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDD-ID 76 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc---ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCc-eE
Confidence 4799999999999999999998 89999999998754 367899999999999987653112222221111000 00
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
....+... ...+.++..++|.+|.+.|.+.+.+ |+ ++++++++++.. . ..++|+
T Consensus 77 ~~~~g~~~-----~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~------~~~~D~ 132 (765)
T PRK08255 77 VHFKGRRI-----RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------L------AADADL 132 (765)
T ss_pred EEECCEEE-----EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------h------hcCCCE
Confidence 01112111 1123345678999999999998765 78 999988765431 0 147999
Q ss_pred EEeccCCchhhhhhhcCCCcc----cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCce--EEEEEec
Q 014324 163 LVAADGCLSSIRQSFLSDFKL----RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTH--SVFYELL 236 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 236 (426)
||+|||.+|.+|+++.....+ .+..+ .|.+..... . .+ . ..+...+.++ ...||+.
T Consensus 133 VVgADG~~S~vR~~~~~~~~~~~~~~~~~~-~w~g~~~~~--~------~~-------~--~~~~~~~~g~~~~~~y~~~ 194 (765)
T PRK08255 133 VIASDGLNSRIRTRYADTFQPDIDTRRCRF-VWLGTHKVF--D------AF-------T--FAFEETEHGWFQAHAYRFD 194 (765)
T ss_pred EEEcCCCCHHHHHHHHhhcCCceecCCCce-EEecCCCcc--c------ce-------e--EEEEecCCceEEEEEeeeC
Confidence 999999999999986422222 22232 243322110 0 00 0 0000011111 2346666
Q ss_pred CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCcccccc----
Q 014324 237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSN---- 310 (426)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~r---- 310 (426)
++...+.+... .......... ..+.+...+.+.+.+..|.+.. .++..... ...|..+...+.++|..+|
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~ 270 (765)
T PRK08255 195 DDTSTFIVETP--EEVWRAAGLD-EMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVP 270 (765)
T ss_pred CCCcEEEEEcC--HHHHHhcCCc-cCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCccc
Confidence 65544433332 1110000001 1122233333344455564432 22222111 1224444445567899999
Q ss_pred EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL 383 (426)
Q Consensus 311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~ 383 (426)
++|+|||||.++|+.|||+|+||+||..|+++|.... .+.+.+|+.|++.|+++++.+++.++..+.+|...
T Consensus 271 v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~-~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 271 VVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP-GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred EEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence 9999999999999999999999999999999998764 37889999999999999999999999998888764
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.1e-31 Score=260.23 Aligned_cols=333 Identities=12% Similarity=0.073 Sum_probs=195.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
..+||+||||||||+++|+.|+++|++|+|+||+.... .++|.+ ++ ...++++++ .+.+...... ...+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~--k~cgg~--i~---~~~l~~lgl--~~~~~~~~i~-~~~~~ 107 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNA--KPCGGA--IP---LCMVGEFDL--PLDIIDRKVT-KMKMI 107 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC--CCcccc--cc---HhHHhhhcC--cHHHHHHHhh-hheEe
Confidence 46899999999999999999999999999999986432 234544 43 356677766 3332221110 00111
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC-CceEEEEEEecc----CCceEE
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEV-KTTVTVKAKVLQ----TDEVIE 157 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~-~~~v~v~~~~~~----~g~~~~ 157 (426)
...+..+..............++|..|++.|.+.+. .|+ ++.+ +++++....+ +..+.+++++.. +|+..+
T Consensus 108 -~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 185 (450)
T PLN00093 108 -SPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT 185 (450)
T ss_pred -cCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence 111111100000011112235899999999998765 477 7654 5777764322 234555543221 244456
Q ss_pred EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEec----CCCceEEEE
Q 014324 158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASGTHSVFY 233 (426)
Q Consensus 158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 233 (426)
++||+||+|||++|.+|+.+.... ......+...+..+... ..+ ......+++ .|+.|.|+|
T Consensus 186 v~a~~VIgADG~~S~vrr~lg~~~---~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~g~~~~p~~Y~Wif 251 (450)
T PLN00093 186 LEVDAVIGADGANSRVAKDIDAGD---YDYAIAFQERIKIPDDK---------MEY--YEDLAEMYVGDDVSPDFYGWVF 251 (450)
T ss_pred EEeCEEEEcCCcchHHHHHhCCCC---cceeEEEEEEEeCChhh---------ccc--cCCeEEEEeCCCCCCCceEEEE
Confidence 999999999999999999985331 11222333333222110 000 111222333 467899999
Q ss_pred EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcC-cceEeeeeccCCCCccccccEE
Q 014324 234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETK-EPFINAMYDCDPLKQIFWSNVV 312 (426)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~rv~ 312 (426)
|.++ ..++........ .......+.+.. .+...+.... ........+..+.+++..+|++
T Consensus 252 P~g~-~~~VG~g~~~~~----------~~~~~~~~~l~~--------~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~~vl 312 (450)
T PLN00093 252 PKCD-HVAVGTGTVVNK----------PAIKKYQRATRN--------RAKDKIAGGKIIRVEAHPIPEHPRPRRVRGRVA 312 (450)
T ss_pred ECCC-cEEEEEEEccCC----------CChHHHHHHHHH--------HhhhhcCCCeEEEEEEEEcccccccceeCCCcE
Confidence 9884 444443221110 001111111111 1111111111 0111111223345567789999
Q ss_pred EeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccc----cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVE----GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~----~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
|||||||.++|++|+|++.||.+|..+|+.+.+.... .....|+.|++.++......+..+..+.++|..
T Consensus 313 LvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~ 386 (450)
T PLN00093 313 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYR 386 (450)
T ss_pred EEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999876311 245779999998888787788888888887765
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=2.7e-31 Score=255.70 Aligned_cols=323 Identities=14% Similarity=0.162 Sum_probs=190.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc-CCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA-GGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
|||+||||||||+++|+.|++.|++|+|+|++ ..+ ..++ ..+++. .++.+++ .+.+...... ... ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~---~~cg--~~i~~~---~l~~l~i--~~~~~~~~~~-~~~-~~ 68 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI---KPCG--GAIPPC---LIEEFDI--PDSLIDRRVT-QMR-MI 68 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc---CcCc--CCcCHh---hhhhcCC--chHHHhhhcc-eeE-EE
Confidence 69999999999999999999999999999998 322 1344 445553 5666665 3333222111 111 11
Q ss_pred ccccccccccccccCCCcc-hhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEec---cCCceEEEe
Q 014324 86 ATDNAKVTRTLARDDNFNF-RAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVL---QTDEVIEIK 159 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~---~~g~~~~~~ 159 (426)
..++..+... ......+ ..++|..|++.|.+.+. .|+ ++.+ +++++..+++ .+++++.+. .+|+..+++
T Consensus 69 ~~~~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~--~~~v~~~~~~~~~~~~~~~i~ 143 (388)
T TIGR02023 69 SPSRVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD--GVTLTYRTPKKGAGGEKGSVE 143 (388)
T ss_pred cCCCceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC--eEEEEEEeccccCCCcceEEE
Confidence 1112111111 1111122 25899999999998764 477 7554 6888875443 555554321 133445699
Q ss_pred ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe----cCCCceEEEEEe
Q 014324 160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD----LASGTHSVFYEL 235 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 235 (426)
||+||+|||.+|.+|+.+..... ......+...+..+... ..+.. ....++ ..++.+.|++|.
T Consensus 144 a~~VI~AdG~~S~v~r~lg~~~~--~~~~~a~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~p~~y~wv~P~ 210 (388)
T TIGR02023 144 ADVVIGADGANSPVAKELGLPKN--LPRVIAYQERIKLPDDK---------MAYYE--ELADVYYGGEVSPDFYGWVFPK 210 (388)
T ss_pred eCEEEECCCCCcHHHHHcCCCCC--CcEEEEEEEEecCCchh---------cccCC--CeEEEEECCCcCCCceEEEeeC
Confidence 99999999999999999843221 11112233333222100 00111 111222 346778999998
Q ss_pred cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEeeeeccCCCCccccccEEEe
Q 014324 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFINAMYDCDPLKQIFWSNVVLI 314 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~rv~Lv 314 (426)
++ ..++........ ....+..+.+.+. . . +..... .......+..+.++|..++++||
T Consensus 211 ~~-~~~vg~~~~~~~----------~~~~~~~~~l~~~-~---~------~~~~~~~~~~~~~ip~~~~~~~~~~~v~lv 269 (388)
T TIGR02023 211 GD-HIAVGTGTGTHG----------FDAKQLQANLRRR-A---G------LDGGQTIRREAAPIPMKPRPRWDFGRAMLV 269 (388)
T ss_pred CC-eeEEeEEECCCC----------CCHHHHHHHHHHh-h---C------CCCceEeeeeeEeccccccccccCCCEEEE
Confidence 64 444443221100 0011112222111 0 0 111000 01111222345567778999999
Q ss_pred ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324 315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK 380 (426)
Q Consensus 315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~ 380 (426)
|||||.++|++|+|++.||++|..+++.+.+....+..+.|+.|++.++......+...+.+..++
T Consensus 270 GDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 270 GDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLYGTTFRVLRVLQMVY 335 (388)
T ss_pred eccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998874333467899999999988876666666666555
No 48
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.2e-31 Score=249.04 Aligned_cols=312 Identities=17% Similarity=0.112 Sum_probs=180.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
+||+||||||||+++|+.|+++ ++|+|+||++.+.... ...+|..++|++.++|+++|+................ .
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~--~ 78 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK--T 78 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee--E
Confidence 7999999999999999999999 9999999998653111 1235678999999999999873111111100000000 0
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
. .+...........+..++|..|+++|.+..+.++ +++++++++++..++ .+.+++ .++|+..+++||+||
T Consensus 79 ~----~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~--~~~v~~--~~~g~~~~i~a~~vV 150 (351)
T PRK11445 79 I----DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDD--GYHVIF--RADGWEQHITARYLV 150 (351)
T ss_pred e----cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCC--EEEEEE--ecCCcEEEEEeCEEE
Confidence 0 0001111112224557999999999998766788 999999999986444 455553 246665568999999
Q ss_pred eccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe-cCCCceEEEEEecCCeeeEE
Q 014324 165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD-LASGTHSVFYELLNKRLNWV 243 (426)
Q Consensus 165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 243 (426)
+|||.+|.+|+++..... ...+..+...+...... +. ....+. -..+.+.|.+|..+ ...+.
T Consensus 151 ~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~------------~~--~~~~f~~~~~~~~~W~~p~~~-~~~~g 213 (351)
T PRK11445 151 GADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPV------------PF--YSCIFDNEITDCYSWSISKDG-YFIFG 213 (351)
T ss_pred ECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCCCCC------------CC--cceEEeccCCCceEEEeCCCC-cEEec
Confidence 999999999999864422 12222222222211100 00 001111 11234566665533 22211
Q ss_pred EEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCc--cccccEEEeccccccC
Q 014324 244 WYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQ--IFWSNVVLIGDAAHPT 321 (426)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~rv~LvGDAAh~~ 321 (426)
+.. +. ..+.+.++.+.+...+ ....+.+.+.... ..+....+... +..+|++|||||||.+
T Consensus 214 -~~~-~~----------~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vvlVGDAAg~i 276 (351)
T PRK11445 214 -GAY-PM----------KDGRERFETLKEKLSA-FGFQFGKPVKTEA----CTVLRPSRWQDFVCGKDNAFLIGEAAGFI 276 (351)
T ss_pred -ccc-cc----------cchHHHHHHHHHHHHh-ccccccccccccc----ccccCcccccccccCCCCEEEEEcccCcc
Confidence 110 10 0112222221111000 0000111111000 00010111122 2348999999999999
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHH
Q 014324 322 TPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTS 367 (426)
Q Consensus 322 ~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~ 367 (426)
+|++|+|++.|++||..|++.|.+.. +..|+.|++.++.-.-
T Consensus 277 ~P~tG~Gi~~al~sa~~la~~l~~~~----~~~~~~y~~~~~~~~~ 318 (351)
T PRK11445 277 SPSSLEGISYALDSARILSEVLNKQP----EKLNTAYWRKTRKLRL 318 (351)
T ss_pred CCccCccHHHHHHhHHHHHHHHHhcc----cchHHHHHHHHHHHHH
Confidence 99999999999999999999998653 4558899888777553
No 49
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=3.7e-30 Score=247.64 Aligned_cols=330 Identities=13% Similarity=0.091 Sum_probs=193.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+||+||||||||+++|+.|+++|++|+|+||.+.+. .+++.+ +++ +.++++++ .+.+...... ..... .
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~--~~cg~~--i~~---~~l~~~g~--~~~~~~~~i~-~~~~~-~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA--KPCGGA--IPL---CMVDEFAL--PRDIIDRRVT-KMKMI-S 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC--CCcccc--ccH---hhHhhccC--chhHHHhhhc-eeEEe-c
Confidence 589999999999999999999999999999986543 234433 433 45677766 2222221111 01110 1
Q ss_pred cccccccccccccCCCcc-hhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEec-CCceEEEEEEecc----CCceEEE
Q 014324 87 TDNAKVTRTLARDDNFNF-RAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISE-VKTTVTVKAKVLQ----TDEVIEI 158 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~-~~~~v~v~~~~~~----~g~~~~~ 158 (426)
..+..+.... .....++ ..++|..|++.|.+.+. .|+ ++.++ +++++... .+..+++++.... .|+..++
T Consensus 70 p~~~~~~~~~-~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i 147 (398)
T TIGR02028 70 PSNIAVDIGR-TLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTL 147 (398)
T ss_pred CCceEEEecc-CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEE
Confidence 1111110000 0011122 36899999999998775 488 77664 77765422 2234445433221 1444569
Q ss_pred eecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEec----CCCceEEEEE
Q 014324 159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASGTHSVFYE 234 (426)
Q Consensus 159 ~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 234 (426)
+||+||+|||.+|.+|+.+.... +.....+...+..+... .........+++ .|+.|.|+||
T Consensus 148 ~a~~VIgADG~~S~v~~~~g~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~p~gY~WifP 213 (398)
T TIGR02028 148 EVDAVIGADGANSRVAKEIDAGD---YSYAIAFQERIRLPDEK-----------MAYYDDLAEMYVGDDVSPDFYGWVFP 213 (398)
T ss_pred EeCEEEECCCcchHHHHHhCCCC---cceEEEEEEEeeCChhh-----------cccCCCeEEEEeCCCCCCCceEEEEE
Confidence 99999999999999999985321 12222333233332110 000111223333 4678999999
Q ss_pred ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcC-cceEeeeeccCCCCccccccEEE
Q 014324 235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETK-EPFINAMYDCDPLKQIFWSNVVL 313 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~rv~L 313 (426)
.++ ..++...... . ...++++.+.... .....+.... ........+..+.+++..+|++|
T Consensus 214 ~~~-~~~VG~g~~~--~------------~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~ll 274 (398)
T TIGR02028 214 KCD-HVAVGTGTVA--A------------KPEIKRLQSGIRA----RAAGKVAGGRIIRVEAHPIPEHPRPRRVVGRVAL 274 (398)
T ss_pred CCC-eEEEEEEeCC--C------------CccHHHHHHhhhh----hhhhccCCCcEEEEEEEeccccccccEECCCEEE
Confidence 874 4444332110 0 0011222221111 0000010000 01111111223445677899999
Q ss_pred eccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc--c--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 314 IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV--E--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 314 vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~--~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
||||||.++|++|+|++.||.+|..+|+.+.+... + ..+..|+.|++..+......+..+..+.+++..
T Consensus 275 vGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR02028 275 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR 347 (398)
T ss_pred EEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999987631 1 246789999998888777788888888887765
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=4.3e-30 Score=238.83 Aligned_cols=291 Identities=19% Similarity=0.126 Sum_probs=176.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
+||+||||||+|+++|+.|+++|++|+|+||...+.. ..++..+.+++.+.+..++.. .... . .......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~---~~~~~~~~~~~~~~l~~~~~~---~~~~---~-~~~~~~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY---KPCGGALSPRVLEELDLPLEL---IVNL---V-RGARFFS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc---ccccCccCHhHHHHhcCCchh---hhhh---e-eeEEEEc
Confidence 6999999999999999999999999999999988653 446677888888777654321 1111 0 0001111
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..++.+ ...........++|..+.+.|.+.+.+ ++ ++++++++++..+++ .+.+.+ .++. .++++|+||
T Consensus 71 ~~~~~~---~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~~~~~---~~~~-~~~~a~~vv 141 (295)
T TIGR02032 71 PNGDSV---EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RVVVIV---RGGE-GTVTAKIVI 141 (295)
T ss_pred CCCcEE---EeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EEEEEE---cCcc-EEEEeCEEE
Confidence 122111 011112334568999999999987764 77 999999999986544 444432 2222 248999999
Q ss_pred eccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe--cCCCceEEEEEecCCeeeE
Q 014324 165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD--LASGTHSVFYELLNKRLNW 242 (426)
Q Consensus 165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 242 (426)
+|||.+|.+|+.+......... ...+...++.+.... .......++. ..++.+.+++|..++..++
T Consensus 142 ~a~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v 209 (295)
T TIGR02032 142 GADGSRSIVAKKLGLRKEPREL-GVAARAEVEMPDEEV-----------DEDFVEVYIDRGISPGGYGWVFPKGDGTANV 209 (295)
T ss_pred ECCCcchHHHHhcCCCCCCcce-eeEEEEEEecCCccc-----------CcceEEEEcCCCcCCCceEEEEeCCCCeEEE
Confidence 9999999999987422221111 233444444332110 0000011111 1245788899998887766
Q ss_pred EEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCC
Q 014324 243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTT 322 (426)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~ 322 (426)
.+....+. ......+.++++... . |.+... + ......+.+....+..++..+|++|+|||||+++
T Consensus 210 ~~~~~~~~--------~~~~~~~~~~~~~~~----~-~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~ 274 (295)
T TIGR02032 210 GVGSRSAE--------EGEDLKKYLKDFLAR----R-PELKDA-E-TVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVK 274 (295)
T ss_pred eeeeccCC--------CCCCHHHHHHHHHHh----C-cccccC-c-EEeeeceeeccCCCCCccccCCEEEEecccCCCC
Confidence 65443221 011123333333321 1 111110 0 0011222222234556778899999999999999
Q ss_pred CCCcchhhhhHHHHHHHHHHH
Q 014324 323 PHGLRSTNMSILDAMVLGKSL 343 (426)
Q Consensus 323 P~~G~G~~~ai~Da~~La~~L 343 (426)
|+.|||+|+||+||..+|++|
T Consensus 275 P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 275 PLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CccCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999875
No 51
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=229.80 Aligned_cols=383 Identities=17% Similarity=0.149 Sum_probs=264.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
...||||||||.+|.++|+.|+|.|.+|.|+||+-..+... -|..++|.+...|.++|+ .+.++.........+.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRi---vGEllQPGG~~~L~~LGl--~Dcve~IDAQ~v~Gy~ 118 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRI---VGELLQPGGYLALSKLGL--EDCVEGIDAQRVTGYA 118 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHH---HHHhcCcchhHHHHHhCH--HHHhhcccceEeeeeE
Confidence 45899999999999999999999999999999998765422 478899999999999999 7888877766555555
Q ss_pred ccccccccc--ccc-cccCCCcchhccHHHHHHHHHhcCC--CCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324 85 QATDNAKVT--RTL-ARDDNFNFRAAHWADLHGLLYNALP--PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK 159 (426)
Q Consensus 85 ~~~~~~~~~--~~~-~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~ 159 (426)
.+.+|+.+. ... ...........+.+.+.+-|++.+. .++-.....|.++.+ +++....|+++ .+.|+..+..
T Consensus 119 ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLle-e~gvvkGV~yk-~k~gee~~~~ 196 (509)
T KOG1298|consen 119 IFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLE-EEGVVKGVTYK-NKEGEEVEAF 196 (509)
T ss_pred EEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHh-ccCeEEeEEEe-cCCCceEEEe
Confidence 566666322 111 1223344566777888888888653 366223344555543 23322235554 4556667789
Q ss_pred ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324 160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (426)
|.+.|.|||++|.+|+.+..+.-.. -...+.|.+-.. .+...|.++ ++.+++..++++|++....
T Consensus 197 ApLTvVCDGcfSnlRrsL~~~~v~~--V~S~fVG~vl~N----------~~l~~p~hg---hvIL~~pspil~Y~ISStE 261 (509)
T KOG1298|consen 197 APLTVVCDGCFSNLRRSLCDPKVEE--VPSYFVGLVLKN----------CRLPAPNHG---HVILSKPSPILVYQISSTE 261 (509)
T ss_pred cceEEEecchhHHHHHHhcCCcccc--cchheeeeeecC----------CCCCCCCcc---eEEecCCCcEEEEEecchh
Confidence 9999999999999999985322111 112222322211 112234433 4567788899999999998
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCccccccEEEeccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSNVVLIGDA 317 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~rv~LvGDA 317 (426)
+++.+-++.+. .+.....++...+.+...+...+.+++.+..... .++.......|.......+++|+|||
T Consensus 262 vRcl~~v~g~~-------~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDA 334 (509)
T KOG1298|consen 262 VRCLVDVPGQK-------LPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDA 334 (509)
T ss_pred eEEEEecCccc-------CCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEccc
Confidence 88776654321 1222244555555555555556666655433221 22222222344444556899999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCC
Q 014324 318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNT 393 (426)
Q Consensus 318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (426)
..+-+|..|.||..|+.|...|.+.|.... .+.+-+.+++|...|++....+...+..+.++|....++..
T Consensus 335 fNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~----- 409 (509)
T KOG1298|consen 335 FNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEAR----- 409 (509)
T ss_pred ccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHH-----
Confidence 999999999999999999999999997643 23456889999999999999999999999999988644332
Q ss_pred CCCChhhhHHHhhccCCcccCCCcccccc
Q 014324 394 KTASPQDCQELQQKTMPFFADLPSLVDST 422 (426)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (426)
-...+.|.+++..+..+++|.-.++-.+
T Consensus 410 -~~mr~gCfdYl~~GG~c~sGpv~lLsGl 437 (509)
T KOG1298|consen 410 -KAMRKGCFDYLKRGGFCVSGPVALLSGL 437 (509)
T ss_pred -HHHHHHHHHHHhcCCccccchHHHhcCC
Confidence 2334689999999999999988777544
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=2.6e-29 Score=242.00 Aligned_cols=329 Identities=20% Similarity=0.225 Sum_probs=202.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
..+||+||||||||++||+.|+++|++|+|+||...++... .++-.+.+..++-+ .+.....+. ........
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~--~~~~~~~~~~l~~l---~~~~~~~i~---~~v~~~~~ 73 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP--CCGGGLSPRALEEL---IPDFDEEIE---RKVTGARI 73 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc--cccceechhhHHHh---CCCcchhhh---eeeeeeEE
Confidence 45899999999999999999999999999999999998643 23344666544433 331111111 11111111
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
... +... .........+.++|..+.++|.+.++ .|+ ++.++++.++..+++...+.+. .++ .++++++
T Consensus 74 ~~~-~~~~---~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~----~~~--~e~~a~~ 143 (396)
T COG0644 74 YFP-GEKV---AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR----AGD--DEVRAKV 143 (396)
T ss_pred Eec-CCce---EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE----cCC--EEEEcCE
Confidence 111 1111 11111134678999999999998776 588 9999999999976554444432 222 4599999
Q ss_pred EEeccCCchhhhhhhcCCCcccccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCceee--EecCCCceEEEEEecCCe
Q 014324 163 LVAADGCLSSIRQSFLSDFKLRYSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLY--FDLASGTHSVFYELLNKR 239 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 239 (426)
||+|||.+|.+++.+... ......+ .....++..+.. .......+ ....+.++.|+||..++.
T Consensus 144 vI~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~-------------~~~~~~~~~~~~~~~~Gy~wifP~~~~~ 209 (396)
T COG0644 144 VIDADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDD-------------GDVEEFLYGPLDVGPGGYGWIFPLGDGH 209 (396)
T ss_pred EEECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCC-------------CceEEEEecCCccCCCceEEEEECCCce
Confidence 999999999999998655 2222222 223333333200 00011111 135678999999999998
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhh-cCcceEeeeec-cCCCCc-cccccEEEecc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKE-TKEPFINAMYD-CDPLKQ-IFWSNVVLIGD 316 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~p~~~-~~~~rv~LvGD 316 (426)
.++........+. .....+.++++.+ ++.....+.. ..........+ ..+... +..+++++|||
T Consensus 210 ~~VG~g~~~~~~~-------~~~~~~~l~~f~~------~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGD 276 (396)
T COG0644 210 ANVGIGVLLDDPS-------LSPFLELLERFKE------HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGD 276 (396)
T ss_pred EEEEEEEecCCcC-------CCchHHHHHHHHh------CcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEec
Confidence 8888776544311 1101133343332 1112221111 11111111222 222222 56799999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014324 317 AAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI 379 (426)
Q Consensus 317 AAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~ 379 (426)
||.+++|+.|+|+..||.+|..+|+.+.+....+ .+.|..|++..+...........+..+.
T Consensus 277 AAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-~~~l~~Y~~~~~~~~~~~~~~~~~~~~~ 338 (396)
T COG0644 277 AAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-EEALAEYERLLRKSLAREDLKSLRLLKL 338 (396)
T ss_pred cccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999875333 6778889988887665554444444433
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.96 E-value=1.8e-27 Score=230.64 Aligned_cols=350 Identities=17% Similarity=0.173 Sum_probs=190.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCc--hhhhccCcceee
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP--HLLHLATVPLTI 81 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~ 81 (426)
+.++||+||||||||+++|+.|+++|++|+|+||.+.++....+|. .+.....+ .+.+... ..+........+
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg--~i~~~~~~---~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGG--RLYAHTLE---AIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCc--eeecccHH---HHcccccccCCccccccceeE
Confidence 3579999999999999999999999999999999998765332232 23333322 2211100 011111111001
Q ss_pred ccccccccc-cccc--cccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324 82 DQNQATDNA-KVTR--TLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI 156 (426)
Q Consensus 82 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~ 156 (426)
.+. ..++. .+.. ..........+.+.|..++++|.+.+. .|+ ++.+++|+++..++ ..+... ..++.
T Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v---~~~~~-- 149 (429)
T PRK10015 78 SFL-TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGV---QAGDD-- 149 (429)
T ss_pred EEE-eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEE---EeCCe--
Confidence 000 01111 0100 000011123567899999999988775 488 99999999987543 234321 12232
Q ss_pred EEeecEEEeccCCchhhhhhhcCCCcccccc-eEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCC-Cc---eEE
Q 014324 157 EIKGNLLVAADGCLSSIRQSFLSDFKLRYSG-YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS-GT---HSV 231 (426)
Q Consensus 157 ~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~ 231 (426)
+++||+||+|||.+|.+++.+.......... .......+..+ ...+..........+..+++.-.+ ++ +.|
T Consensus 150 ~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~----~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~ 225 (429)
T PRK10015 150 ILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLT----PEQINDRFNITGEEGAAWLFAGSPSDGLMGGGF 225 (429)
T ss_pred EEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCC----HHHhhHhhcCCCCCCeEEEecCccCCCCCCceE
Confidence 4899999999999999999874211111111 12222223222 111111100111112222222111 11 345
Q ss_pred EEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEeeeec---cCCCCccc
Q 014324 232 FYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFINAMYD---CDPLKQIF 307 (426)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~p~~~~~ 307 (426)
+|+ ..+.+++.+......... ......+.++++. .+|.+.+++..... .......+ ...+++..
T Consensus 226 ~~~-~~d~v~vGv~~~~~~~~~-----~~~~~~~~l~~~~------~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~ 293 (429)
T PRK10015 226 LYT-NKDSISLGLVCGLGDIAH-----AQKSVPQMLEDFK------QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLV 293 (429)
T ss_pred EEE-cCCcEEEEEEEehhhhcc-----CCCCHHHHHHHHh------hChHHHHHhcCCEEEEEeeEEcccCCcccCCccc
Confidence 554 345566554332211100 0111233333332 24566666643321 11122211 12345667
Q ss_pred cccEEEeccccccCC--CCCcchhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHhhhhhH-HHHHHHHHHhhhhhhc
Q 014324 308 WSNVVLIGDAAHPTT--PHGLRSTNMSILDAMVLGKSLEKWGV--EGLLSALEEYQTVRLPVT-SKQVLHSRRLGRIKQG 382 (426)
Q Consensus 308 ~~rv~LvGDAAh~~~--P~~G~G~~~ai~Da~~La~~L~~~~~--~~~~~~L~~Y~~~R~~~~-~~~~~~~~~~~~~~~~ 382 (426)
.+++++|||||+.++ |+.|+||+.||.++..+|+.+.+... +.....|+.|++..+... .+-++..+++..++..
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~ 373 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMEN 373 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcC
Confidence 899999999999998 46999999999999999999987632 335677899999888653 3324555555555543
No 54
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=1.6e-26 Score=224.42 Aligned_cols=348 Identities=14% Similarity=0.149 Sum_probs=187.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCch--hhhccCcceeec
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPH--LLHLATVPLTID 82 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 82 (426)
+.+||+||||||||+++|+.|+++|++|+|+||.+.++....+| +. +.....+ .+...... .+..........
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~g-g~-l~~~~~e---~l~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTG-GR-LYAHSLE---HIIPGFADSAPVERLITHEKLA 78 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccc-ce-echhhHH---HHhhhhhhcCcccceeeeeeEE
Confidence 56999999999999999999999999999999999886533222 22 3333322 22110000 011100000000
Q ss_pred cccccccc-ccccc--ccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324 83 QNQATDNA-KVTRT--LARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE 157 (426)
Q Consensus 83 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~ 157 (426)
+ ...++. .+... .........+.+.|..++++|.+.+. .|+ ++.+++|+++..++ ..+.+. ..+|.+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v---~~~g~~-- 150 (428)
T PRK10157 79 F-MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGV---EADGDV-- 150 (428)
T ss_pred E-EcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEE---EcCCcE--
Confidence 0 011111 00000 00111223567889999999998775 488 99999999988643 233222 234543
Q ss_pred EeecEEEeccCCchhhhhhhcCCCcccccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCC----ceEEE
Q 014324 158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASG----THSVF 232 (426)
Q Consensus 158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 232 (426)
++||+||+|||.+|.+++.+....+...... ..+...+..+. ..+..........+...++.-.+. ++.|+
T Consensus 151 i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~ 226 (428)
T PRK10157 151 IEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPK----SVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFL 226 (428)
T ss_pred EECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCH----HHHHHhhccCCCCCeEEEEEECCCCCCcCceeE
Confidence 8999999999999999998743322222211 22222333321 111110000011122222211111 12355
Q ss_pred EEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEe---eeeccCCCCcccc
Q 014324 233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFIN---AMYDCDPLKQIFW 308 (426)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~p~~~~~~ 308 (426)
|+ ..+..++.+......... ......+.++.+. -.|.+...+..... .... +.......++...
T Consensus 227 ~~-~~~~~svG~~~~~~~~~~-----~~~~~~~~l~~~~------~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~ 294 (428)
T PRK10157 227 YT-NENTLSLGLVCGLHHLHD-----AKKSVPQMLEDFK------QHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVG 294 (428)
T ss_pred EE-cCCeEEEEEEEehHHhcc-----cCCCHHHHHHHHH------hCchHHHHhCCCeEHHHHhhHhhcCCcccCCceec
Confidence 53 344555555443221100 0111223333221 13444444432211 0111 1111123445667
Q ss_pred ccEEEeccccccCCC--CCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324 309 SNVVLIGDAAHPTTP--HGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ 381 (426)
Q Consensus 309 ~rv~LvGDAAh~~~P--~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~ 381 (426)
+++++|||||..++| +.|+|++.||.++..+|+.+.+.. ++.....|..|++..+.-+-+-++..+++..++.
T Consensus 295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~ 371 (428)
T PRK10157 295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLD 371 (428)
T ss_pred CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHHhccHHHhc
Confidence 999999999999998 699999999999999999987763 2345678999998777765333444444444443
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=7.3e-25 Score=211.58 Aligned_cols=318 Identities=13% Similarity=0.023 Sum_probs=168.5
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccccc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQAT 87 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (426)
||+||||||||+++|+.|++.|++|+|+|+.+..+.. ..+.+.+.. ++.+++ .+.+. ..... ......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~----~~~~~~~~~---~~~~~~--~~~~~-~~~~~--~~~~~~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN----HTYGVWDDD---LSDLGL--ADCVE-HVWPD--VYEYRF 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC----ccccccHhh---hhhhch--hhHHh-hcCCC--ceEEec
Confidence 7999999999999999999999999999999765421 122232221 223322 11111 00000 000000
Q ss_pred ccccccccccccCCCcchhccHHHHHHHHHhcCCC-CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEec
Q 014324 88 DNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA 166 (426)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~A 166 (426)
.+.. .....++..++|..+.+.|.+.+.+ ++..+.++++++..+ +...+.++ ..+|++ ++|++||+|
T Consensus 69 ~~~~------~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~-~~~~~~v~---~~~g~~--~~a~~VI~A 136 (388)
T TIGR01790 69 PKQP------RKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEAD-GVALSTVY---CAGGQR--IQARLVIDA 136 (388)
T ss_pred CCcc------hhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEec-CCceeEEE---eCCCCE--EEeCEEEEC
Confidence 1100 0112345568999999999887764 663346688888753 23455555 456654 899999999
Q ss_pred cCCchhhhhhhcCCCcccccceEEEEEE-eeCCCCCchHHHhhhhcccCCCCce-eeEecCCCceEEEEEecCCeeeEEE
Q 014324 167 DGCLSSIRQSFLSDFKLRYSGYCAWRGV-LDFSGIEDSEIIKGMRRVYPDLGKC-LYFDLASGTHSVFYELLNKRLNWVW 244 (426)
Q Consensus 167 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (426)
||.+|.+++...+ . ..++....|. +..+....+.... ...++...... .........+.+++|..++...+..
T Consensus 137 ~G~~s~~~~~~~~-~---~~~~q~~~G~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~ 211 (388)
T TIGR01790 137 RGFGPLVQYVRFP-L---NVGFQVAYGVEARLSRPPHGPSSM-VIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEE 211 (388)
T ss_pred CCCchhcccccCC-C---CceEEEEEEEEEEEcCCCCCCCce-EEEeccccccccccccCCCCceEEEeecCCCeEEEEe
Confidence 9999977644311 1 1122222222 2221111000000 00001000000 0000000126777887766543321
Q ss_pred EEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCC
Q 014324 245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPH 324 (426)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~ 324 (426)
.. ... ....+.+.+++.+....+.......+++ ...+...+.....++..+|+++||||||.++|+
T Consensus 212 ~~-~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~~i~-----~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~ 277 (388)
T TIGR01790 212 TS-LAD--------RPALPRDRLRQRILARLNAQGWQIKTIE-----EEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPT 277 (388)
T ss_pred cc-ccC--------CCCCCHHHHHHHHHHHHHHcCCeeeEEE-----eeeeEEEecccCCCccCCCeeeeechhcCcCCc
Confidence 11 000 0111333333333322221110111111 011111111111123679999999999999999
Q ss_pred CcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHH
Q 014324 325 GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSK 368 (426)
Q Consensus 325 ~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~ 368 (426)
+|+|++.|+++|..|++.|.+....+.+.+++.|++..+++..+
T Consensus 278 tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 278 TGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTERRR 321 (388)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHHHH
Confidence 99999999999999999998775455678899998776665554
No 56
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.92 E-value=2.1e-24 Score=194.90 Aligned_cols=354 Identities=19% Similarity=0.194 Sum_probs=209.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCCCC------CCcceeccChhHHHHHHHHhcCCchhhhc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPTGS------PTGAGLGLDRPAQRIIQSWLNGRPHLLHL 74 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 74 (426)
..+||+||||||+|+++|..|+.+ -++|.++|....+.-.. -..+-..++|.+...++.++. .+.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~a--wd~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGA--WDHIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCH--HHHhhh
Confidence 368999999999999999999965 47999999984432111 122356789999999998876 333332
Q ss_pred c-CcceeeccccccccccccccccccCCCc---chhccHHHHHHHHHh--c--CCCCe-eEeeeeEEEEEEe------cC
Q 014324 75 A-TVPLTIDQNQATDNAKVTRTLARDDNFN---FRAAHWADLHGLLYN--A--LPPEI-FLRGHQYLSFCIS------EV 139 (426)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~l~~~L~~--~--~~~~~-i~~~~~v~~~~~~------~~ 139 (426)
. ..+... ...+++.....+....+... .+.+....++..|.. . ....+ |....++.++... +.
T Consensus 113 ~R~~~~~~--~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n 190 (481)
T KOG3855|consen 113 DRYQKFSR--MLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN 190 (481)
T ss_pred hccccccc--eeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence 2 222211 11122221111111111111 233444555555552 2 22466 8888888887763 12
Q ss_pred CceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCc
Q 014324 140 KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGK 218 (426)
Q Consensus 140 ~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (426)
...+.++ +.||.. +.+|++|||||.+|.+|+....+. ...|..+ +..+.+.+... .....
T Consensus 191 ~~~~~i~---l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~h-avVAtl~l~~~-------------~~~~~ 251 (481)
T KOG3855|consen 191 GMWFHIT---LTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQH-AVVATLKLEEE-------------AILNG 251 (481)
T ss_pred cceEEEE---eccCce--eeeceeeccccccchhhhhcCCCcccccccce-eeeEEEEeccc-------------ccccc
Confidence 2233444 677875 899999999999999999974222 1122222 12222222221 11111
Q ss_pred eeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhc------------cc-------
Q 014324 219 CLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKV------------WL------- 279 (426)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~------- 279 (426)
..+..+-|.+++.+.|.+++..+++|........ .....+++.+-.++...+.. +.
T Consensus 252 ~AwQRFlP~GpiAllpl~d~~s~LvWSts~~~a~-----~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~ 326 (481)
T KOG3855|consen 252 VAWQRFLPTGPIALLPLSDTLSSLVWSTSPENAS-----ILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQL 326 (481)
T ss_pred hhHHhcCCCCceeecccccccccceeecCHHHHH-----HHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhc
Confidence 2234566778888999999999999987632211 01112222222221111100 00
Q ss_pred -HHHHHHhh-hcC---cceEeeee----ccCCC-----CccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHh
Q 014324 280 -PEFVKVIK-ETK---EPFINAMY----DCDPL-----KQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEK 345 (426)
Q Consensus 280 -~~~~~~~~-~~~---~~~~~~~~----~~~p~-----~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~ 345 (426)
+.+..-.. ... ++....+. -.+|+ +.++.+|+.|+|||||.++|..|||.|+++.|+..|...|.+
T Consensus 327 ~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ 406 (481)
T KOG3855|consen 327 SESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSE 406 (481)
T ss_pred cHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHH
Confidence 00100000 000 11111110 13333 345669999999999999999999999999999999999988
Q ss_pred hc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCC
Q 014324 346 WG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP 386 (426)
Q Consensus 346 ~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 386 (426)
+. .-....-|+.|+.+|.+....+.-....+.++|+....|
T Consensus 407 ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~ 451 (481)
T KOG3855|consen 407 AIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP 451 (481)
T ss_pred HHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCc
Confidence 63 223457799999999998888888888899999876555
No 57
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=1.2e-22 Score=199.01 Aligned_cols=333 Identities=12% Similarity=-0.009 Sum_probs=180.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
..+||+||||||||+++|+.|++.|++|+|+|+..... ..+++.. ..++.+++ .+.+... ... ...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~------~n~GvW~---~~l~~lgl--~~~i~~~-w~~--~~v 172 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT------NNYGVWE---DEFKDLGL--EDCIEHV-WRD--TIV 172 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC------Cccccch---hHHHhcCc--HHHHHhh-cCC--cEE
Confidence 45899999999999999999999999999999864332 1122222 23455554 2222211 110 001
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL 163 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 163 (426)
...++... . ...++..++|..|.+.|.+.+.+ |+...+++|+++..+++...+ ++ ..+|.+ ++|++|
T Consensus 173 ~~~~~~~~----~--~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~v-v~---~~dG~~--i~A~lV 240 (529)
T PLN02697 173 YLDDDKPI----M--IGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRL-VA---CEDGRV--IPCRLA 240 (529)
T ss_pred EecCCcee----e--ccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEE-EE---EcCCcE--EECCEE
Confidence 11111110 0 12334468999999999887754 773378899998854433222 22 356654 899999
Q ss_pred EeccCCchhhhhhhc-CCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCC--ceeeEecCCCceEEEEEecCCee
Q 014324 164 VAADGCLSSIRQSFL-SDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLG--KCLYFDLASGTHSVFYELLNKRL 240 (426)
Q Consensus 164 I~AdG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (426)
|+|||++|. +.+. +...+.......+...+.++....++... +-.++.... .......+...+.+++|..++..
T Consensus 241 I~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~-vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~ 317 (529)
T PLN02697 241 TVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLM-VFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRV 317 (529)
T ss_pred EECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchh-eeeccccccccccccccCCCceEEEEeecCCCeE
Confidence 999999993 2221 11122222333444444443211111111 111111100 00000111224667778777766
Q ss_pred eEEEE-EecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec-cCCCCccccccEEEecccc
Q 014324 241 NWVWY-INQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD-CDPLKQIFWSNVVLIGDAA 318 (426)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~rv~LvGDAA 318 (426)
.+--. +.... ..+.+.+++.+..+.+...-...++++ ..+...+ ..+++.. .++++++||||
T Consensus 318 ~VE~T~l~~~~----------~l~~~~l~~~L~~~l~~~Gi~~~~i~~-----~E~g~iPm~g~~~~~-~~~vl~vG~AA 381 (529)
T PLN02697 318 FFEETCLASKD----------AMPFDLLKKRLMSRLETMGIRILKTYE-----EEWSYIPVGGSLPNT-EQKNLAFGAAA 381 (529)
T ss_pred EEEEeeeccCC----------CCCHHHHHHHHHHHHHhCCCCcceEEE-----EEeeeecCCCCCccc-CCCeeEeehhh
Confidence 55222 21111 012333444333222211000111111 1111111 1233433 68999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHHHHHHhhcc-----------ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGV-----------EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382 (426)
Q Consensus 319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~-----------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~ 382 (426)
+.++|.+|.|+..++.+|..+|+.+++..+ +.....++.|++.+.+...+....-.....++..
T Consensus 382 G~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~ 456 (529)
T PLN02697 382 SMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQ 456 (529)
T ss_pred cCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999988632 1346889999998887666555544444444443
No 58
>PLN02463 lycopene beta cyclase
Probab=99.91 E-value=2.3e-22 Score=194.29 Aligned_cols=295 Identities=16% Similarity=0.112 Sum_probs=161.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
..+||+||||||||+++|+.|+++|++|+|+|+.+.... +..++ + ..+.++.+++ .+.+... .+.. ..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~--p~~~g--~---w~~~l~~lgl--~~~l~~~-w~~~--~v 94 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW--PNNYG--V---WVDEFEALGL--LDCLDTT-WPGA--VV 94 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh--ccccc--h---HHHHHHHCCc--HHHHHhh-CCCc--EE
Confidence 458999999999999999999999999999999765322 11111 1 1234555555 3333221 1100 00
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 162 (426)
...++.. .....++..++|..|.+.|.+.+.+ |+ ++ ..+|.+++..++ .+.|+ +++|++ ++||+
T Consensus 95 ~~~~~~~------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~~~V~---~~dG~~--i~A~l 160 (447)
T PLN02463 95 YIDDGKK------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--KSLVV---CDDGVK--IQASL 160 (447)
T ss_pred EEeCCCC------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--eEEEE---ECCCCE--EEcCE
Confidence 1111110 0112345568999999999887764 67 54 578999886433 45555 567764 89999
Q ss_pred EEeccCCchhhhhhhcCCCcccccceEEEEEE-eeCC--CCCchHHHhhhhcccCCC--Cc--eeeEec-CCCceEEEEE
Q 014324 163 LVAADGCLSSIRQSFLSDFKLRYSGYCAWRGV-LDFS--GIEDSEIIKGMRRVYPDL--GK--CLYFDL-ASGTHSVFYE 234 (426)
Q Consensus 163 vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~ 234 (426)
||+|||.+|++++. ..+...++..+.++ ++.+ +.+.+... + .++... +. .....- .-..+.+.+|
T Consensus 161 VI~AdG~~s~l~~~----~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~v--l-MD~r~~~~~~~~~~~~~~~~~p~FlY~~P 233 (447)
T PLN02463 161 VLDATGFSRCLVQY----DKPFNPGYQVAYGILAEVDSHPFDLDKML--F-MDWRDSHLGNNPELRARNSKLPTFLYAMP 233 (447)
T ss_pred EEECcCCCcCccCC----CCCCCccceeeeeEEeecCCCCcccccch--h-hhcChhhccccchhhhccCCCCceEEEEe
Confidence 99999999998753 12223344333333 3332 11111100 0 011100 00 000000 0023667788
Q ss_pred ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec-cCCCCccccccEEE
Q 014324 235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD-CDPLKQIFWSNVVL 313 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~rv~L 313 (426)
.+++++.+-.......+ ..+.+.+++.+....+.+.-...++. ...+...+ ..+++ ...+|+++
T Consensus 234 ~~~~~~~vEeT~l~s~~---------~~~~~~lk~~L~~~l~~~Gi~~~~i~-----~~E~~~IPmg~~~~-~~~~~~~~ 298 (447)
T PLN02463 234 FSSNRIFLEETSLVARP---------GLPMDDIQERMVARLRHLGIKVKSVE-----EDEKCVIPMGGPLP-VIPQRVLG 298 (447)
T ss_pred cCCCeEEEEeeeeecCC---------CCCHHHHHHHHHHHHHHCCCCcceee-----eeeeeEeeCCCCCC-CCCCCEEE
Confidence 87776443322110000 11333334333322221110111111 01111111 12222 23589999
Q ss_pred eccccccCCCCCcchhhhhHHHHHHHHHHHHhhc
Q 014324 314 IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG 347 (426)
Q Consensus 314 vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~ 347 (426)
+||||..++|.+|.|+..++..|..+|+.+.+..
T Consensus 299 ~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~ 332 (447)
T PLN02463 299 IGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYL 332 (447)
T ss_pred ecchhcCcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998763
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.90 E-value=1.9e-22 Score=196.12 Aligned_cols=320 Identities=16% Similarity=0.103 Sum_probs=181.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee--c
Q 014324 8 KAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI--D 82 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 82 (426)
||+|||||+||.++|..|++.+ ++|+|+|+...+. .+.|....|....+++.+|+...+.+.+.....+. .
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~----~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~ 76 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR----IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIR 76 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-------SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC----CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEE
Confidence 7999999999999999999998 8999999999874 56778899999999999998522235555433221 1
Q ss_pred ccccc-ccc----cccc----------------------------------------ccccc-C----CCcchhccHHHH
Q 014324 83 QNQAT-DNA----KVTR----------------------------------------TLARD-D----NFNFRAAHWADL 112 (426)
Q Consensus 83 ~~~~~-~~~----~~~~----------------------------------------~~~~~-~----~~~~~~~~r~~l 112 (426)
+..+. .+. .++. ..... . ....+.++|..+
T Consensus 77 f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~f 156 (454)
T PF04820_consen 77 FVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKF 156 (454)
T ss_dssp EESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHH
T ss_pred eeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHH
Confidence 11111 000 0000 00000 0 112256789999
Q ss_pred HHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCcccccc-e-
Q 014324 113 HGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSG-Y- 188 (426)
Q Consensus 113 ~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~-~- 188 (426)
.++|.+.+. .|+ ++.+ +|+++..++++....|+ .++|++ ++||++|+|+|..|.+.+..+...-..... .
T Consensus 157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~---~~~g~~--i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~ 230 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVR---LDDGRT--IEADFFIDASGRRSLLARKALKVGFRDWSDWLP 230 (454)
T ss_dssp HHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEE---ETTSEE--EEESEEEE-SGGG-CCCCCCT-EEEEEETTTCE
T ss_pred HHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEE---ECCCCE--EEEeEEEECCCccchhhHhhhcCCCcccccccc
Confidence 999999765 588 6665 58888876654444565 567765 899999999999999887742111111111 1
Q ss_pred --EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHH
Q 014324 189 --CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDM 266 (426)
Q Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
..+...++... +. .........+.++.|.+|++++..+ .+.+..... .+.+.
T Consensus 231 ~d~av~~~~~~~~--------------~~-~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~----------s~~~A 284 (454)
T PF04820_consen 231 NDRAVAVQVPNED--------------PP-EPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI----------SDDEA 284 (454)
T ss_dssp EEEEEEEEEE-SS--------------CT-TSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS----------HHHHH
T ss_pred ccEEEEEecCcCC--------------CC-CCceeEEecCCceEEEccCCCcceE-EEEeccccC----------CHHHH
Confidence 11111122211 00 1112234457889999999998766 444432211 11222
Q ss_pred HHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh
Q 014324 267 IKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW 346 (426)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~ 346 (426)
..++... +........ ...... .....+...+|+++|||||++++|+.++|+.+++..+..|+..|...
T Consensus 285 ~~~l~~~--------l~~~~~~~~--~~i~~~-~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~ 353 (454)
T PF04820_consen 285 EAELLAY--------LGGSPEAEP--RHIRFR-SGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD 353 (454)
T ss_dssp HHHHHHH--------HTCHCTTSC--EEEE-S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT
T ss_pred HHHHHHh--------cchhhhcch--hhhccc-ccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC
Confidence 2222221 111111111 111110 11123345689999999999999999999999999999999998765
Q ss_pred ccccHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 014324 347 GVEGLLSALEEYQTVRLPVTSKQVLHSRRL 376 (426)
Q Consensus 347 ~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~ 376 (426)
. ..+.+++.|++......+.+.+.-...
T Consensus 354 ~--~~~~~~~~Yn~~~~~~~~~~~~fi~~h 381 (454)
T PF04820_consen 354 D--FSPAALDRYNRRMRREYERIRDFISLH 381 (454)
T ss_dssp T--CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 337789999999888887665554443
No 60
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.90 E-value=4.9e-22 Score=188.88 Aligned_cols=305 Identities=13% Similarity=0.040 Sum_probs=159.8
Q ss_pred cEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324 8 KAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN 84 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (426)
||+||||||||+++|+.|++. |++|+|+|+.+........+ +...+.+.....++.+ ....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~--------v~~~-------- 64 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADL--------VQTD-------- 64 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhh--------heEe--------
Confidence 799999999999999999987 99999999987654321111 0111111111111110 0000
Q ss_pred cccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+.+..............++..+++.+|.+.+.+.+..+ ++++++|+++. ++ .|++ .+|++ ++||+||
T Consensus 65 -W~~~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~--~~--~v~l-----~dg~~--~~A~~VI 131 (370)
T TIGR01789 65 -WPGYEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLD--AD--GVDL-----APGTR--INARSVI 131 (370)
T ss_pred -CCCCEEECcchhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEe--CC--EEEE-----CCCCE--EEeeEEE
Confidence 00000000001111225677899999999998887656 67788999883 33 3543 46765 8999999
Q ss_pred eccCCchhhhhhhcCCCcccccceEEEEEEee-CCCCCchHHHhhhhcccCCCCceeeEecC-CCceEEE--EEecCCee
Q 014324 165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLD-FSGIEDSEIIKGMRRVYPDLGKCLYFDLA-SGTHSVF--YELLNKRL 240 (426)
Q Consensus 165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~ 240 (426)
+|||.+|+-.. +.++..+.|+.- .... .++.... .+-+... .+++.++ .|+.+++.
T Consensus 132 ~A~G~~s~~~~---------~~~~Q~f~G~~~r~~~p-~~~~~~~----------lMD~~~~q~~g~~F~Y~lP~~~~~~ 191 (370)
T TIGR01789 132 DCRGFKPSAHL---------KGGFQVFLGREMRLQEP-HGLENPI----------IMDATVDQLAGYRFVYVLPLGSHDL 191 (370)
T ss_pred ECCCCCCCccc---------cceeeEEEEEEEEEcCC-CCCCccE----------EEeeeccCCCCceEEEECcCCCCeE
Confidence 99999975211 123333333321 1111 1100000 0111111 2222233 45556554
Q ss_pred eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCC-CCccc-cccEEEecccc
Q 014324 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDP-LKQIF-WSNVVLIGDAA 318 (426)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-~~rv~LvGDAA 318 (426)
.+-.....+. ...+.+.+++.+..+.....-...+++.... ...++....+ ...|. .++++++||||
T Consensus 192 lvE~T~~s~~---------~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~--g~iPm~~~~~~~~~~~~~~~v~~iG~AA 260 (370)
T TIGR01789 192 LIEDTYYADD---------PLLDRNALSQRIDQYARANGWQNGTPVRHEQ--GVLPVLLGGDFSAYQDEVRIVAIAGLRA 260 (370)
T ss_pred EEEEEeccCC---------CCCCHHHHHHHHHHHHHHhCCCceEEEEeee--eEEeeecCCCcccccccCCceeeeeccc
Confidence 4432211110 1123444443333221110001111111110 0111110011 11222 35699999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHH
Q 014324 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHS 373 (426)
Q Consensus 319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~ 373 (426)
|.++|.+|+|++.+++||..|++.+.... ....+++..|...|+++........
T Consensus 261 g~~~P~tGyg~~~a~~~a~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (370)
T TIGR01789 261 GLTHPTTGYSLPVAVENADALAAQPDLSS-EQLAAFIDSRARRHWSKTGYYRLLN 314 (370)
T ss_pred ccccccccccHHHHHHHHHHHHhccCcCc-cchhhhhhHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999985121 2455667889988888776444333
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.83 E-value=1.9e-18 Score=165.15 Aligned_cols=282 Identities=18% Similarity=0.169 Sum_probs=153.8
Q ss_pred cEEEEcCChHHHHHHHHH--HHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 8 KAVIVGGSIAGISCAHAL--LRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L--~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
|||||||||||+++|+.| ++.|.+|+|+|+++.........+++ .......++.+.. .... .. ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~--~~~~~~~~~~~v~--------~~w~-~~-~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCF--WEKDLGPLDSLVS--------HRWS-GW-RVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccc--ccccccchHHHHh--------eecC-ce-EEE
Confidence 899999999999999999 78899999999998863222222222 1111111221111 1100 00 001
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..++. ... ..+++..+++..|.+.|.+.+.. +++..+++|.+++...+ .+.++ +.+|++ ++|++||
T Consensus 69 ~~~~~---~~~---~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~--~~~v~---~~~g~~--i~a~~Vv 135 (374)
T PF05834_consen 69 FPDGS---RIL---IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGD--GVLVV---LADGRT--IRARVVV 135 (374)
T ss_pred eCCCc---eEE---cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCc--eEEEE---ECCCCE--EEeeEEE
Confidence 11111 001 11567789999999999998875 45888999999985443 44444 677875 8999999
Q ss_pred eccCCchhhhhhhcCCCcccccceEEEEEE-eeCCCCCchHHHhhhhcccCCCCceeeEec----CCCceEEEEEecCCe
Q 014324 165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGV-LDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASGTHSVFYELLNKR 239 (426)
Q Consensus 165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 239 (426)
+|+|..|...+.. ++..+.|. +..+....+ +.....+-+.. +...+++++|...++
T Consensus 136 Da~g~~~~~~~~~---------~~Q~f~G~~v~~~~~~f~----------~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~ 196 (374)
T PF05834_consen 136 DARGPSSPKARPL---------GLQHFYGWEVETDEPVFD----------PDTATLMDFRVPQSADGPSFLYVLPFSEDR 196 (374)
T ss_pred ECCCccccccccc---------ccceeEEEEEeccCCCCC----------CCceEEEEecccCCCCCceEEEEEEcCCCe
Confidence 9999776622211 11222222 222211000 00001111112 223455566777766
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAH 319 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh 319 (426)
..+-..+-.+.+ ..+.+.+++.+....+...-...++++.... ..++. ..+..+..+++++.+|+||+
T Consensus 197 alvE~T~fs~~~---------~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G--~IPm~-~~~~~~~~~~~v~~iG~agG 264 (374)
T PF05834_consen 197 ALVEETSFSPRP---------ALPEEELKARLRRYLERLGIDDYEILEEERG--VIPMT-TGGFPPRFGQRVIRIGTAGG 264 (374)
T ss_pred EEEEEEEEcCCC---------CCCHHHHHHHHHHHHHHcCCCceeEEEeecc--eeecc-cCCCccccCCCeeeEEcccc
Confidence 554333222211 0133444443332222111111111111100 01110 11222334578999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHHHHHHh
Q 014324 320 PTTPHGLRSTNMSILDAMVLGKSLEK 345 (426)
Q Consensus 320 ~~~P~~G~G~~~ai~Da~~La~~L~~ 345 (426)
.++|.+|.++..+.+.|..+|+.|.+
T Consensus 265 ~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 265 MVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999986
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.82 E-value=2e-18 Score=151.91 Aligned_cols=235 Identities=17% Similarity=0.158 Sum_probs=159.9
Q ss_pred ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324 160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239 (426)
Q Consensus 160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (426)
|+++|.|||..|++|+.+. .........+.|..-... ....|.++ ++.+++..++++|++..+.
T Consensus 2 A~LtivaDG~~S~fRk~l~---~~~~~v~S~fvGl~l~~~----------~lp~~~~g---hvil~~~~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS---DNKPQVRSYFVGLILKDA----------PLPKPNHG---HVILGKPGPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhc---CCCCceeeeEEEEEEcCC----------CCCCCCce---EEEEcCCCcEEEEEcCCCc
Confidence 6899999999999999985 223333444555443221 11223333 4567788999999999999
Q ss_pred eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcC--cceEeeeeccCCCCccccccEEEeccc
Q 014324 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETK--EPFINAMYDCDPLKQIFWSNVVLIGDA 317 (426)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~rv~LvGDA 317 (426)
+++.+-++.+.. ....+.+..+.+.+...+...+.+++.+..+- ..++.......|.......+++++|||
T Consensus 66 tR~Lvdvp~~k~-------P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA 138 (276)
T PF08491_consen 66 TRVLVDVPGPKL-------PSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDA 138 (276)
T ss_pred eEEEEEeCCCcc-------CCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehh
Confidence 888776654311 11112233344444444555555555433221 122222222333333444889999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCC
Q 014324 318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNT 393 (426)
Q Consensus 318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (426)
+++.+|++|+||+.|+.|+..|++.|.... .+...+++++|..+|++....+.-.+..+..+|...+...
T Consensus 139 ~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l------ 212 (276)
T PF08491_consen 139 ANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYL------ 212 (276)
T ss_pred hcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHH------
Confidence 999999999999999999999999998762 1235689999999999999999999999999998753211
Q ss_pred CCCChhhhHHHhhccCCcccCCCcccccccc
Q 014324 394 KTASPQDCQELQQKTMPFFADLPSLVDSTLC 424 (426)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (426)
......|.++++.+..+++|.-+++-.+..
T Consensus 213 -~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p 242 (276)
T PF08491_consen 213 -KALRQGCFKYFQLGGECVSGPVALLSGLNP 242 (276)
T ss_pred -HHHHHHHHHHHHcCCCCCcchHHHhccCCC
Confidence 233467999999999999998888766543
No 63
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.75 E-value=1.6e-16 Score=143.98 Aligned_cols=381 Identities=15% Similarity=0.139 Sum_probs=213.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA------GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP 78 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (426)
+.+||+|||||||||++|+.|++. .++|+|+||...++.+. .+ |-.|.|.+ |+++.++..+.=.....+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lS-Gaviep~a---ldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LS-GAVIEPGA---LDELLPDWKEDGAPLNTP 149 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ec-ceeeccch---hhhhCcchhhcCCccccc
Confidence 458999999999999999998763 57999999999987643 22 33467764 444444212211111222
Q ss_pred eeeccccccccc-ccc-ccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEec---c
Q 014324 79 LTIDQNQATDNA-KVT-RTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVL---Q 151 (426)
Q Consensus 79 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~---~ 151 (426)
...+...+..++ .+. ..+......+.+.++-..+.++|-+.+++ |+ |+-+..+.++.+++++....+-.++. +
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k 229 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK 229 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence 222222222222 111 11112223345677889999999998876 88 99999999998877765444432221 2
Q ss_pred CCceE-------EEeecEEEeccCCchhhhhhhcCCCccc----ccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCce
Q 014324 152 TDEVI-------EIKGNLLVAADGCLSSIRQSFLSDFKLR----YSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKC 219 (426)
Q Consensus 152 ~g~~~-------~~~~d~vI~AdG~~S~vR~~l~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (426)
+|... ++.|+..|-|.|++..+.+++......+ ...| .....++.+++....+........+|-
T Consensus 230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl---- 305 (621)
T KOG2415|consen 230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPL---- 305 (621)
T ss_pred CCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcc----
Confidence 33221 4889999999999999888876444332 1111 122233333332221111111111121
Q ss_pred eeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEe--ee
Q 014324 220 LYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN--AM 297 (426)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 297 (426)
....-+..++|-+.+..+.+.+.+-.+..+ +...+...+.++. -+|.+.+.++........ .+
T Consensus 306 ---~~~tYGGsFlYh~~d~~VavGlVVgLdY~N------P~lsP~~EFQk~K------~hP~i~~vleGgk~i~YgARaL 370 (621)
T KOG2415|consen 306 ---DNDTYGGSFLYHFNDPLVAVGLVVGLDYKN------PYLSPYKEFQKMK------HHPSISKVLEGGKRIAYGARAL 370 (621)
T ss_pred ---cCCccCceeEEEcCCCeEEEEEEEEecCCC------CCCCHHHHHHHhh------cCcchhhhhcCcceeeehhhhh
Confidence 111223445666677777777766655432 1122333344332 256777777643321110 11
Q ss_pred ec--cCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-ccc-H-HHH--HHHHHHhhhhhH-HHH
Q 014324 298 YD--CDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEG-L-LSA--LEEYQTVRLPVT-SKQ 369 (426)
Q Consensus 298 ~~--~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~-~-~~~--L~~Y~~~R~~~~-~~~ 369 (426)
.. .+.+|.....+=+|||-+|++++----.|..+||.++...|+.+.+.. +.+ . ... +..|++.-+.-. .+-
T Consensus 371 NEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~Ke 450 (621)
T KOG2415|consen 371 NEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKE 450 (621)
T ss_pred ccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHH
Confidence 11 334566777888999999999999999999999999999999987763 111 1 111 458887766633 333
Q ss_pred HHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccC
Q 014324 370 VLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFAD 414 (426)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (426)
+-..+....-|++. -..-..+.-...+.-++....+|+..
T Consensus 451 LysvRNirPsf~~~-----lG~ygGmiySgi~~~~lkG~~PwTLk 490 (621)
T KOG2415|consen 451 LYSVRNIRPSFHGK-----LGLYGGMIYSGIFSYVLKGKVPWTLK 490 (621)
T ss_pred HHHhhccCcccccc-----cccccchhhhhhHHHhhcCccceeec
Confidence 33334444444432 01111123233444555555556544
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.60 E-value=1.1e-14 Score=131.01 Aligned_cols=143 Identities=18% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCccee-----ccChhHHHHHHHHhcCCchhhhccCcce
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGL-----GLDRPAQRIIQSWLNGRPHLLHLATVPL 79 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (426)
..+||+||||||||+++|+.|++.|++|+|+||...++... .+.+. .+.+...++|+++++. .
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~-~~gg~~~~~~~v~~~~~~~l~~~gv~-----------~ 91 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM-WGGGMLFNKIVVQEEADEILDEFGIR-----------Y 91 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccCccccccccchHHHHHHHHHCCCC-----------c
Confidence 46899999999999999999999999999999998875321 22221 2233334444444431 1
Q ss_pred eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEec---cC--
Q 014324 80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVL---QT-- 152 (426)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~---~~-- 152 (426)
.. . ....+.+++..+.+.|.+.+. .|+ ++.++++.++..++++....+..... .+
T Consensus 92 ~~----~--------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~ 153 (257)
T PRK04176 92 KE----V--------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL 153 (257)
T ss_pred ee----e--------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence 00 0 011234566777777777654 588 99999999998654422222222111 11
Q ss_pred -CceEEEeecEEEeccCCchhhhhhh
Q 014324 153 -DEVIEIKGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 153 -g~~~~~~~d~vI~AdG~~S~vR~~l 177 (426)
.+..+++|++||.|+|++|.+.+.+
T Consensus 154 ~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 154 HVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 2345699999999999999999887
No 65
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.55 E-value=2.9e-14 Score=130.48 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=96.9
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--Cc--ceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP--TG--AGLGLDRPAQRIIQSWLNGRPHLLHLATVPL 79 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~--~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (426)
|+.+||+|||||||||+||..++++|.+|+|||+.+.++..-. -| +.+.......+++.+.+-+ .+.++..-..+
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~-~~fl~sal~~f 79 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGN-GHFLKSALARF 79 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCc-chHHHHHHHhC
Confidence 4568999999999999999999999999999999999875221 11 2333333344555555421 12222111111
Q ss_pred ee-ccccccccccccccccccCCCcchh-ccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 80 TI-DQNQATDNAKVTRTLARDDNFNFRA-AHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
.. +.+.+..+..+.... ...+.-|.. ..-..+.++|..++++ |+ ++.+++|.+++.++ ....+. ..+|++
T Consensus 80 t~~d~i~~~e~~Gi~~~e-~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~---t~~g~~ 153 (408)
T COG2081 80 TPEDFIDWVEGLGIALKE-EDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLD---TSSGET 153 (408)
T ss_pred CHHHHHHHHHhcCCeeEE-ccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEE---cCCCCE
Confidence 00 011111111010000 011111111 3336677777777764 88 99999999999754 345554 677874
Q ss_pred EEEeecEEEeccCCchhh
Q 014324 156 IEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 156 ~~~~~d~vI~AdG~~S~v 173 (426)
++||-||.|+|..|.-
T Consensus 154 --i~~d~lilAtGG~S~P 169 (408)
T COG2081 154 --VKCDSLILATGGKSWP 169 (408)
T ss_pred --EEccEEEEecCCcCCC
Confidence 8999999999988843
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.53 E-value=1.3e-13 Score=123.68 Aligned_cols=143 Identities=20% Similarity=0.277 Sum_probs=92.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCccee-----ccChhHHHHHHHHhcCCchhhhccCcce
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGL-----GLDRPAQRIIQSWLNGRPHLLHLATVPL 79 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (426)
..+||+|||||||||++|+.|+++|++|+|+||...++... .+.+. .+.+...++++.+++ +.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~-~~gg~~~~~~~~~~~~~~~l~~~gi-----------~~ 87 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS-WGGGMLFSKIVVEKPAHEILDEFGI-----------RY 87 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc-cCCCcceecccccchHHHHHHHCCC-----------Ce
Confidence 46899999999999999999999999999999999875422 22221 122223333433332 10
Q ss_pred eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEec---cCC
Q 014324 80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVL---QTD 153 (426)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~---~~g 153 (426)
. ....++...++..+.+.|.+.+. .|+ +++++++.++..+++...|. +..... .+|
T Consensus 88 ~------------------~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g 149 (254)
T TIGR00292 88 E------------------DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG 149 (254)
T ss_pred e------------------eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence 0 00111223456677777776554 578 99999999998755421222 221100 011
Q ss_pred ---ceEEEeecEEEeccCCchhhhhhh
Q 014324 154 ---EVIEIKGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 154 ---~~~~~~~d~vI~AdG~~S~vR~~l 177 (426)
+..+++|++||+|||+.|.+.+.+
T Consensus 150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 150 LHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 345699999999999999988886
No 67
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.49 E-value=2.5e-13 Score=114.48 Aligned_cols=142 Identities=19% Similarity=0.219 Sum_probs=85.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcce-----eccChhHHHHHHHHhcCCchhhhccCcce
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAG-----LGLDRPAQRIIQSWLNGRPHLLHLATVPL 79 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~-----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (426)
..+||+|||||||||++|+.|+++|++|+|||++..++... ++.| +.+...+..+|+.+++... +
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~-~~Gg~lf~~iVVq~~a~~iL~elgi~y~----~----- 85 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGM-WGGGMLFNKIVVQEEADEILDELGIPYE----E----- 85 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTT-TS-CTT---EEEETTTHHHHHHHT---E----E-----
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccc-cccccccchhhhhhhHHHHHHhCCceeE----E-----
Confidence 35899999999999999999999999999999999987533 3333 3455567777777766200 0
Q ss_pred eeccccccccccccccccccCCCcchhccHHHHHHHH-HhcCCCCe-eEeeeeEEEEEEecCCceEE-EEEEec---cC-
Q 014324 80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLL-YNALPPEI-FLRGHQYLSFCISEVKTTVT-VKAKVL---QT- 152 (426)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~---~~- 152 (426)
.. ..++..+...+-..| ...+..|+ |+-.+.|.++...++ ..|. +..+.. ..
T Consensus 86 ------~~--------------~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~g 144 (230)
T PF01946_consen 86 ------YG--------------DGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAG 144 (230)
T ss_dssp -------S--------------SEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT-
T ss_pred ------eC--------------CeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhh
Confidence 00 112223334444444 44667888 888999999887664 3443 211111 11
Q ss_pred --CceEEEeecEEEeccCCchhhhhhh
Q 014324 153 --DEVIEIKGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 153 --g~~~~~~~d~vI~AdG~~S~vR~~l 177 (426)
=.+.++++++||+|+|+-+.+-+.+
T Consensus 145 lHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 145 LHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp -T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred cCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 1345799999999999988766554
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.44 E-value=3e-12 Score=107.22 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=91.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceec-----cChhHHHHHHHHhcCCchhhhccCccee
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG-----LDRPAQRIIQSWLNGRPHLLHLATVPLT 80 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (426)
..||+|||||||||+||+.|+++|.+|+||||+-.++.+. ++.|.. +...+.++|+.+++. .+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~-w~GGmlf~~iVv~~~a~~iL~e~gI~-ye---------- 97 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI-WGGGMLFNKIVVREEADEILDEFGIR-YE---------- 97 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc-cccccccceeeecchHHHHHHHhCCc-ce----------
Confidence 4699999999999999999999999999999999987644 444433 445666777776662 00
Q ss_pred eccccccccccccccccccCCCcchhccHHHHHHHH-HhcCCCCe-eEeeeeEEEEEEecCC--ceEEEEEEec-cCC--
Q 014324 81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLL-YNALPPEI-FLRGHQYLSFCISEVK--TTVTVKAKVL-QTD-- 153 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~~~~-i~~~~~v~~~~~~~~~--~~v~v~~~~~-~~g-- 153 (426)
...+ +++..+-..+-..| ..++..|. |..++.|.++...++. .+|.+..... ..+
T Consensus 98 ----~~e~--------------g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh 159 (262)
T COG1635 98 ----EEED--------------GYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH 159 (262)
T ss_pred ----ecCC--------------ceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc
Confidence 0111 11122223333333 44566688 8889999998876553 1222211000 011
Q ss_pred -ceEEEeecEEEeccCCchhhhhhh
Q 014324 154 -EVIEIKGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 154 -~~~~~~~d~vI~AdG~~S~vR~~l 177 (426)
.+.++++++||+|+|+-..+-+.+
T Consensus 160 vDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 160 VDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cCcceeeEEEEEeCCCCchHHHHHH
Confidence 234589999999999988776665
No 69
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=1.2e-11 Score=118.71 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=90.4
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHH----HHHHHHhcCCchhhhccCc
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQ----RIIQSWLNGRPHLLHLATV 77 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~ 77 (426)
+.+...+|+|||||||||++|..|.++|++|+||||...++. -+...+..- .+.+++-.++..++.
T Consensus 2 ~~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG------lW~y~~~~~~~~ss~Y~~l~tn~pKe~~---- 71 (448)
T KOG1399|consen 2 IMMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG------LWKYTENVEVVHSSVYKSLRTNLPKEMM---- 71 (448)
T ss_pred CcCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc------eEeecCcccccccchhhhhhccCChhhh----
Confidence 345668999999999999999999999999999999999652 233332211 111111111011100
Q ss_pred ceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324 78 PLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQTD 153 (426)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~~g 153 (426)
.+. ... .....+-+.+++..+.++|.+.++. +. |+++++++.+....+ +.|.|+.++...+
T Consensus 72 -------~~~------dfp-f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~ 136 (448)
T KOG1399|consen 72 -------GYS------DFP-FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ 136 (448)
T ss_pred -------cCC------CCC-CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc
Confidence 000 000 1111333446667889999887764 33 999999998886442 4666664433222
Q ss_pred ceEEEeecEEEeccCCch
Q 014324 154 EVIEIKGNLLVAADGCLS 171 (426)
Q Consensus 154 ~~~~~~~d~vI~AdG~~S 171 (426)
..+..+|.||.|+|.+.
T Consensus 137 -~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 137 -IEEEIFDAVVVCTGHYV 153 (448)
T ss_pred -eeEEEeeEEEEcccCcC
Confidence 34578999999999994
No 70
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.33 E-value=3.2e-10 Score=112.80 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
|+.++.+||+|||||++|+++|+.|+++|++|+|+||....
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 55567799999999999999999999999999999998543
No 71
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.33 E-value=3e-12 Score=122.39 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=69.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCc-ceeccCh-----------------hHHHHHHHHhcC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTG-AGLGLDR-----------------PAQRIIQSWLNG 67 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~-~~~~l~~-----------------~~~~~l~~~~~~ 67 (426)
|||+|||||||||+||+.|++.|.+|+|+||.+.++..- -+| ..++++. .....++++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999999975310 011 1111111 111122222110
Q ss_pred C-chhhhccCcceeeccccccccccccccccccCCCcch-hccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceE
Q 014324 68 R-PHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFR-AAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTV 143 (426)
Q Consensus 68 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v 143 (426)
. .+.+.+.+.+.. ....+..|. .-.-.++.+.|.+.+.+ ++ ++++++|.+++.+++ ..+
T Consensus 81 d~~~ff~~~Gv~~~----------------~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f 143 (409)
T PF03486_consen 81 DLIAFFEELGVPTK----------------IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVF 143 (409)
T ss_dssp HHHHHHHHTT--EE----------------E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEE
T ss_pred HHHHHHHhcCCeEE----------------EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-cee
Confidence 0 001111111110 000111111 11235677777777664 88 999999999987544 335
Q ss_pred EEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 144 TVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 144 ~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
.|. .+++. .+.||.||.|+|..|.
T Consensus 144 ~v~---~~~~~--~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 144 GVK---TKNGG--EYEADAVILATGGKSY 167 (409)
T ss_dssp EEE---ETTTE--EEEESEEEE----SSS
T ss_pred Eee---ccCcc--cccCCEEEEecCCCCc
Confidence 555 33444 3899999999998874
No 72
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.32 E-value=1.3e-11 Score=120.62 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=84.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCC---------chhhhcc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGR---------PHLLHLA 75 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~---------~~~~~~~ 75 (426)
...+|+|||||||||++|..|.+.|++|+||||....+ ..+...+..-. +.++... .+.+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG------G~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn 80 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG------GLWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTN 80 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc------ceeecCCCcCC--CccccCCCCcccchhhhhhhhcc
Confidence 45799999999999999999999999999999999864 22333322100 0001100 0000000
Q ss_pred CcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEecc
Q 014324 76 TVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQ 151 (426)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~ 151 (426)
.+.. ...+.+- .+...........-.-+.+..+.++|.+.+.. ++ |+++++|++++..+ ..++|+.++ .
T Consensus 81 -~p~~--~m~f~df-p~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~-~ 153 (461)
T PLN02172 81 -LPRE--CMGYRDF-PFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKN-S 153 (461)
T ss_pred -CCHh--hccCCCC-CCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEc-C
Confidence 0000 0000000 00000000000001123457788888876643 33 88999999998643 466666432 2
Q ss_pred CCceEEEeecEEEeccCCchh
Q 014324 152 TDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 152 ~g~~~~~~~d~vI~AdG~~S~ 172 (426)
++...+..+|.||.|+|..+.
T Consensus 154 ~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 154 GGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred CCceEEEEcCEEEEeccCCCC
Confidence 233335689999999998764
No 73
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=5e-10 Score=111.50 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=37.4
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
||.+.++||+|||||++|+++|+.|+++|++|+|+||....
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 66667799999999999999999999999999999999654
No 74
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.26 E-value=1.3e-09 Score=105.04 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=32.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+||+|||||++|+++|+.|+++|.+|+|+|+....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 59999999999999999999999999999997654
No 75
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.26 E-value=4.1e-11 Score=118.61 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=83.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhcc-Ccceeecccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPLTIDQNQ 85 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 85 (426)
.+|+|||||+|||++|..|.+.|++++||||++.++ ..+....... -|. ..+.+. .........
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG------G~W~~~~~~~-----~g~---~~~y~sl~~n~sk~~~- 66 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG------GLWRYTENPE-----DGR---SSVYDSLHTNTSKEMM- 66 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS------GGGCHSTTCC-----CSE---GGGSTT-B-SS-GGGS-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC------ccCeeCCcCC-----CCc---cccccceEEeeCchHh-
Confidence 579999999999999999999999999999999864 2222111000 000 000000 000000000
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-C--e-eEeeeeEEEEEEecCC---ceEEEEEEeccCCceEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-E--I-FLRGHQYLSFCISEVK---TTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~~~~~~~~---~~v~v~~~~~~~g~~~~~ 158 (426)
.+...... ...+ .-+++..+.++|.+.++. + - |+++++|++++..++. ..+.|+. ..+|+..+.
T Consensus 67 -----~fsdfp~p-~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~--~~~g~~~~~ 137 (531)
T PF00743_consen 67 -----AFSDFPFP-EDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTT--ENDGKEETE 137 (531)
T ss_dssp -----CCTTS-HC-CCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEE--TTTTEEEEE
T ss_pred -----cCCCcCCC-CCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEe--ecCCeEEEE
Confidence 01111111 1111 135678899999887753 2 2 9999999999986542 4677763 346666667
Q ss_pred eecEEEeccCCchhh
Q 014324 159 KGNLLVAADGCLSSI 173 (426)
Q Consensus 159 ~~d~vI~AdG~~S~v 173 (426)
.+|.||.|+|.++.-
T Consensus 138 ~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 138 EFDAVVVATGHFSKP 152 (531)
T ss_dssp EECEEEEEE-SSSCE
T ss_pred EeCeEEEcCCCcCCC
Confidence 899999999998743
No 76
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.2e-10 Score=113.41 Aligned_cols=140 Identities=19% Similarity=0.089 Sum_probs=83.0
Q ss_pred CCCCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324 3 KKEKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI 81 (426)
Q Consensus 3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (426)
.+..+||+|||||++||++|+.|.++|+. ++||||+..++. .+..+ ++ ..+. ...+..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg------~W~~~--------ry-----~~l~-~~~p~~- 63 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG------TWRYN--------RY-----PGLR-LDSPKW- 63 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC------cchhc--------cC-----CceE-ECCchh-
Confidence 34678999999999999999999999999 999999998653 11110 00 0000 000000
Q ss_pred ccccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
... .....+. ....++....-+..+..++.+....--+.+++.|..+..+++...++|+ .++|...++++|
T Consensus 64 -~~~-~~~~p~~----~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~---~~~~~~~~~~a~ 134 (443)
T COG2072 64 -LLG-FPFLPFR----WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVT---TSDGGTGELTAD 134 (443)
T ss_pred -eec-cCCCccC----CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEE---EcCCCeeeEecC
Confidence 000 0000000 0011111111234555555443322227788888888888887888888 455554337899
Q ss_pred EEEeccCCchh
Q 014324 162 LLVAADGCLSS 172 (426)
Q Consensus 162 ~vI~AdG~~S~ 172 (426)
.||.|+|..|.
T Consensus 135 ~vV~ATG~~~~ 145 (443)
T COG2072 135 FVVVATGHLSE 145 (443)
T ss_pred EEEEeecCCCC
Confidence 99999999653
No 77
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.23 E-value=2.5e-09 Score=102.98 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=34.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.++||+|||||++|+++|+.|+++|++|+|+||....
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 3589999999999999999999999999999998754
No 78
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.20 E-value=4.2e-11 Score=104.73 Aligned_cols=138 Identities=21% Similarity=0.152 Sum_probs=70.0
Q ss_pred EEEcCChHHHHHHHHHHHcCCc-EEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccccc
Q 014324 10 VIVGGSIAGISCAHALLRAGWD-VVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATD 88 (426)
Q Consensus 10 ~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (426)
+||||||+||++|..|.++|++ |+|||+.+.++. .+.-.+.. ..+....... ......+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg------~w~~~~~~------------~~~~~~~~~~--~~~~~~~ 60 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG------VWRRYYSY------------TRLHSPSFFS--SDFGLPD 60 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT------HHHCH-TT------------TT-BSSSCCT--GGSS--C
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC------eeEEeCCC------------CccccCcccc--ccccCCc
Confidence 6999999999999999999999 999999988642 11100000 0000000000 0000000
Q ss_pred cccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEec
Q 014324 89 NAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA 166 (426)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~A 166 (426)
-..+..............+.+..+.++|.+.++. +. ++++++|++++.+++. +.|+ .++++ +++||.||.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~---~~~~~--~~~a~~VVlA 133 (203)
T PF13738_consen 61 FESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVT---TRDGR--TIRADRVVLA 133 (203)
T ss_dssp CCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEE---ETTS---EEEEEEEEE-
T ss_pred ccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEE---EEecc--eeeeeeEEEe
Confidence 0000000000000011124556677777665553 56 9999999999987554 6666 56663 4889999999
Q ss_pred cCCchhhh
Q 014324 167 DGCLSSIR 174 (426)
Q Consensus 167 dG~~S~vR 174 (426)
+|..|.-+
T Consensus 134 tG~~~~p~ 141 (203)
T PF13738_consen 134 TGHYSHPR 141 (203)
T ss_dssp --SSCSB-
T ss_pred eeccCCCC
Confidence 99876644
No 79
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.19 E-value=2.2e-10 Score=109.22 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
++-..+.+.|.+.+. .|+ ++.+++|+++..+++ .|+ |+ +++|+ +++|.||.|.|.+|..
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~v~gv~---~~~g~---i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG--RVTGVR---TSDGE---IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT--EEEEEE---ETTEE---EEECEEEE--GGGHHH
T ss_pred ccccchhhhhHHHHHHhhhhccccccccchhhccc--cccccc---ccccc---cccceeEeccccccee
Confidence 455667777776654 588 999999999997544 455 55 56664 7999999999998764
No 80
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.18 E-value=5.6e-09 Score=101.72 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=33.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+||+|||||++|+++|+.|+++|.+|+|+||...+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999999854
No 81
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.17 E-value=2.7e-10 Score=108.01 Aligned_cols=169 Identities=17% Similarity=0.080 Sum_probs=94.6
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCC------CcceeccChhHHH-------------HHH
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSP------TGAGLGLDRPAQR-------------IIQ 62 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~------~~~~~~l~~~~~~-------------~l~ 62 (426)
|..+||+|||||+.|+++|..|++++ ++|+|+||...+..++. ...|+...|.... +.+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998 99999999999876431 1124434443211 122
Q ss_pred HHhcCCc-----------------hhhhccCcceeecccccccccccc---ccccc-----cCCCcchhccHHHHHHHHH
Q 014324 63 SWLNGRP-----------------HLLHLATVPLTIDQNQATDNAKVT---RTLAR-----DDNFNFRAAHWADLHGLLY 117 (426)
Q Consensus 63 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~r~~l~~~L~ 117 (426)
+++.... +.+.+......+......+.+.+. ..+.. ........++-..+-..|.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 2221000 000000000000000111111000 00000 0111223345555555566
Q ss_pred hcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 118 NALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 118 ~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
+.+. .|+ ++++++|++++...++ +++ ..+.+|++. ++|++||.|-|.+|- +.+..
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg--~~~--~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDG--VFV--LNTSNGEET-LEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCCc--eEE--EEecCCcEE-EEeeEEEECCchhHHHHHHHh
Confidence 6544 577 9999999999986664 222 125677765 899999999999875 55554
No 82
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.17 E-value=8.6e-09 Score=106.20 Aligned_cols=36 Identities=44% Similarity=0.757 Sum_probs=33.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
+||+|||||++|+++|+.|+++|++|+|+|+...+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~ 296 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence 699999999999999999999999999999987553
No 83
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.12 E-value=1.2e-09 Score=107.99 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=82.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC-CCCCCCCcceeccCh----hHHHHHHHHhcCCchhhhccCcc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG-PPTGSPTGAGLGLDR----PAQRIIQSWLNGRPHLLHLATVP 78 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~-~~~~~~~~~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~~ 78 (426)
+..+||+||||||||+.||+.+++.|.+|+++|+..+ ++. .++.-.+.. ...+-++.+|..........+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~---m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ---MSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc---cCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 3569999999999999999999999999999999852 221 111100111 11122222321101111122111
Q ss_pred eeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCeeEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324 79 LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI 156 (426)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~ 156 (426)
... .....+.. ...+...+++..+.+.|.+.+. .++..+...++++..+++ ....|. ..+|..
T Consensus 79 ~r~--ln~skGpA--------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~g-rV~GV~---t~dG~~- 143 (618)
T PRK05192 79 FRM--LNTSKGPA--------VRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENG-RVVGVV---TQDGLE- 143 (618)
T ss_pred eee--cccCCCCc--------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCC-EEEEEE---ECCCCE-
Confidence 110 00000000 0001124677778888877664 356335677888775332 222344 456764
Q ss_pred EEeecEEEeccCCch
Q 014324 157 EIKGNLLVAADGCLS 171 (426)
Q Consensus 157 ~~~~d~vI~AdG~~S 171 (426)
+.|+.||.|+|.++
T Consensus 144 -I~Ak~VIlATGTFL 157 (618)
T PRK05192 144 -FRAKAVVLTTGTFL 157 (618)
T ss_pred -EECCEEEEeeCcch
Confidence 89999999999865
No 84
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.11 E-value=5.6e-11 Score=115.75 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=35.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccCh-hHHH-HHHHHhcCCchhhhccCcceeecccc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDR-PAQR-IIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
||+||||||+|++||+.+++.|.+|+|+||...++.....+....+.. .... ....+ ..++.+....... . .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi----~~e~~~~~~~~~~-~-~ 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGI----FREFLNRLRARGG-Y-P 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHH----HHHHHHST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCH----HHHHHHHHhhhcc-c-c
Confidence 899999999999999999999999999999998764222222111222 1111 11111 1111111110000 0 0
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL 163 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 163 (426)
....... .....+++..+...|.+.+. .|+ +++++.++++..+++ ....|++. ..+| ..+++|+++
T Consensus 75 ~~~~~~~---------~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~-~~~g-~~~i~A~~~ 142 (428)
T PF12831_consen 75 QEDRYGW---------VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVE-TKSG-RKEIRAKVF 142 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc---------cccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc-ccccccccc
Confidence 0000000 00022333455555666554 488 999999999997532 22234432 2335 556999999
Q ss_pred EeccCCchhhh
Q 014324 164 VAADGCLSSIR 174 (426)
Q Consensus 164 I~AdG~~S~vR 174 (426)
|+|+|-....+
T Consensus 143 IDaTG~g~l~~ 153 (428)
T PF12831_consen 143 IDATGDGDLAA 153 (428)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99999654333
No 85
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.10 E-value=2.5e-08 Score=97.02 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=32.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~ 40 (426)
..+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 568999999999999999999995 95 9999999853
No 86
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.08 E-value=1.3e-08 Score=98.80 Aligned_cols=172 Identities=18% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcC-Cchhhhcc-----
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG-RPHLLHLA----- 75 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~----- 75 (426)
+.+..+||+|||||+.|+-.|+.++.+|++|+++|+....... .++.-.+-+.+.+-|..+... ..+.+.+.
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT--SsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~ 85 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT--SSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLR 85 (532)
T ss_pred ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc--cCccccCccchhhhhhhcchHHHHHHHHHHHHHHH
Confidence 3357899999999999999999999999999999999986542 233344455555555443221 01111111
Q ss_pred -C----cceeecccccc---------ccccc-------------cc------------ccccc-----CCCcchhccHHH
Q 014324 76 -T----VPLTIDQNQAT---------DNAKV-------------TR------------TLARD-----DNFNFRAAHWAD 111 (426)
Q Consensus 76 -~----~~~~~~~~~~~---------~~~~~-------------~~------------~~~~~-----~~~~~~~~~r~~ 111 (426)
. .+..+....+. .|-.. .. .+... ..++-..++-..
T Consensus 86 ~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaR 165 (532)
T COG0578 86 IAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDAR 165 (532)
T ss_pred hCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHH
Confidence 0 00000000000 00000 00 00000 000001111111
Q ss_pred -HHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 112 -LHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 112 -l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
....+.++...|. +...++|+++..+.+ .+.|++++..+|++.+++|+.||-|+|.++- +++..
T Consensus 166 Lv~~~a~~A~~~Ga~il~~~~v~~~~re~~--v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 166 LVAANARDAAEHGAEILTYTRVESLRREGG--VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHHhcccchhhcceeeeeeecCC--EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 2233445556677 899999999987543 5667777788899999999999999999985 56654
No 87
>PLN02661 Putative thiazole synthesis
Probab=99.08 E-value=1.8e-09 Score=99.62 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=82.1
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCcceec-----cChhHHHHHHHHhcCCchhhhccCc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPTGAGLG-----LDRPAQRIIQSWLNGRPHLLHLATV 77 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~ 77 (426)
..++||+|||||++|+++|+.|+++ |++|+|+||...++.+. +..+.. +.....++|+++|+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~-~~gg~l~~~~vv~~~a~e~LeElGV~---------- 158 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA-WLGGQLFSAMVVRKPAHLFLDELGVP---------- 158 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce-eeCcccccccccccHHHHHHHHcCCC----------
Confidence 3468999999999999999999986 89999999988765322 112211 112234445555441
Q ss_pred ceeeccccccccccccccccccCCCcchhc-cHHHHHHHHHh-cCC-CCe-eEeeeeEEEEEEecCCceEEEEEE-----
Q 014324 78 PLTIDQNQATDNAKVTRTLARDDNFNFRAA-HWADLHGLLYN-ALP-PEI-FLRGHQYLSFCISEVKTTVTVKAK----- 148 (426)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~l~~~L~~-~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~----- 148 (426)
... . ++ +... +-..+.+.|.+ .+. .++ ++.++.+.++..+++ ....+.+.
T Consensus 159 -fd~----~-dg--------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~ 217 (357)
T PLN02661 159 -YDE----Q-EN--------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVA 217 (357)
T ss_pred -ccc----C-CC--------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhh
Confidence 100 0 00 0000 11233344544 333 477 999999999986433 22222211
Q ss_pred -eccCC---ceEEEeecEEEeccCCchhhhh
Q 014324 149 -VLQTD---EVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 149 -~~~~g---~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
+..++ +...++|+.||.|+|+.+++-.
T Consensus 218 ~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga 248 (357)
T PLN02661 218 QNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA 248 (357)
T ss_pred hccCCCCccceeEEECCEEEEcCCCCCcchh
Confidence 01111 3346899999999998765433
No 88
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.08 E-value=2.5e-09 Score=105.04 Aligned_cols=162 Identities=22% Similarity=0.208 Sum_probs=84.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCC-cceeccCh-----------hHHHHHHHHh-----cCCc
Q 014324 8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPT-GAGLGLDR-----------PAQRIIQSWL-----NGRP 69 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~-~~~~~l~~-----------~~~~~l~~~~-----~~~~ 69 (426)
||+|||||+||+++|+.++++| .+|+|+||.+..+..+.. +.++.... .....++.+. ....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999876532221 22221111 1111121110 0000
Q ss_pred hhhhccC--cceeeccccccccccccc--ccccc-C-----CCcc-hhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEE
Q 014324 70 HLLHLAT--VPLTIDQNQATDNAKVTR--TLARD-D-----NFNF-RAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCI 136 (426)
Q Consensus 70 ~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~-----~~~~-~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~ 136 (426)
+.+.... ....+.+. ..+-.+.. ..... . ..+. ....-..+.+.|.+.++ .++ ++++++++++..
T Consensus 81 ~l~~~~~~~~~~~i~wl--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~ 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWL--QDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHHhccHHHHHHH--HhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEE
Confidence 0000000 00000000 00000000 00000 0 0000 00112345566666554 478 999999999987
Q ss_pred ecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 137 SEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 137 ~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
++++..+.+.++ ..+++...+.+|.||.|+|..+.
T Consensus 159 ~~~g~v~Gv~~~-~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 DDQGTVVGVVVK-GKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCCcEEEEEEE-eCCCeEEEEecceEEEecCCCCC
Confidence 544433334443 24555556889999999999887
No 89
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.07 E-value=2.5e-09 Score=107.15 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceecc----ChhHHHHHHHH---h-----------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLGL----DRPAQRIIQSW---L----------- 65 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~l----~~~~~~~l~~~---~----------- 65 (426)
..+||+|||+|.|||++|+.+++.|.+|+|+||.......+... .++.. .......++.+ +
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 46899999999999999999999999999999998754222111 12211 11111111111 0
Q ss_pred -----cCCchhhhccCcceeeccccccccccccccccccCCCcch----hccHHHHHHHHHhcCC-CCe-eEeeeeEEEE
Q 014324 66 -----NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFR----AAHWADLHGLLYNALP-PEI-FLRGHQYLSF 134 (426)
Q Consensus 66 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~ 134 (426)
....+.+.+.+.++.. ..++................ ...=..+.+.|.+.+. .++ ++.++.++++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~L 170 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDE----SPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDL 170 (541)
T ss_pred HHHHHHHHHHHHHHcCCcccc----CCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeee
Confidence 0001122223332211 01111000000000000000 0011356666777664 478 9999999999
Q ss_pred EEecCCceEEEEEEec---cCCceEEEeecEEEeccCCchhhhh
Q 014324 135 CISEVKTTVTVKAKVL---QTDEVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 135 ~~~~~~~~v~v~~~~~---~~g~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
..++++..+.+.+.+. .++....+.|+.||.|+|..|.++.
T Consensus 171 i~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~ 214 (541)
T PRK07804 171 LTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYA 214 (541)
T ss_pred EEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCC
Confidence 8644333333433211 1222346899999999999997653
No 90
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.06 E-value=7.5e-08 Score=97.97 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=47.5
Q ss_pred cHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEec-CCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 108 HWADLHGLLYNAL-PPEI-FLRGHQYLSFCISE-VKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 108 ~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~-~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
+-..+...|.+.+ ..|+ ++.+++|+++..++ ++..+.|++++..+|+.+++++|.||.|+|.+|. +++.+
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 4345555555544 4588 99999999998654 2333345554445666656899999999999986 66655
No 91
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=3.4e-09 Score=107.96 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=34.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+||+|||||.|||+||+.+++.|.+|+|+||...+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 35799999999999999999999999999999976653
No 92
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.04 E-value=3.7e-08 Score=96.20 Aligned_cols=35 Identities=31% Similarity=0.673 Sum_probs=32.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+||+|||||++|+++|+.|+++|++|+|+|+...+
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 38999999999999999999999999999998654
No 93
>PRK08275 putative oxidoreductase; Provisional
Probab=99.04 E-value=3.1e-09 Score=107.00 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=86.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCC-Ccc-eec--cCh---hHHHHH--------------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSP-TGA-GLG--LDR---PAQRII-------------- 61 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~-~~~-~~~--l~~---~~~~~l-------------- 61 (426)
..+||+|||||.|||+||+.++++ |.+|+|+||.+....... .+. ++. +.+ .....+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 358999999999999999999987 689999999986432111 010 110 000 001111
Q ss_pred --HHHhc---CCchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEE
Q 014324 62 --QSWLN---GRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSF 134 (426)
Q Consensus 62 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~ 134 (426)
+.+-. ...+.+.+.+.++.. ..++..............+....-..+.+.|.+.+. .++ ++.++.++++
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L 163 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEK----DETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRL 163 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEe----CCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEE
Confidence 11100 001122222222211 011110000000000000000011345566666554 478 9999999999
Q ss_pred EEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 135 CISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 135 ~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
..++++..+-+...+..+|+...+.++.||.|+|..+.+
T Consensus 164 i~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 164 LTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 864343333344333457776678999999999998764
No 94
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.04 E-value=3.9e-09 Score=106.87 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=44.3
Q ss_pred HHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324 111 DLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 111 ~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
.+...|.+.+. .|+ +++++.++++..+ ++..+.+...+..+|+...+.|+.||.|+|..|.+..
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 34555555443 488 9999999999864 3333334433345777667899999999999997654
No 95
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.03 E-value=3.4e-09 Score=106.39 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=35.4
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+++..+||+|||||+.|+++|+.|+++|++|+|+||...
T Consensus 2 ~~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 2 RDSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 455679999999999999999999999999999999654
No 96
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.03 E-value=2.1e-09 Score=104.90 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
..+.+.|.+.++ .++ |+++++++++..+ ++..+.+.+.+..+|+...+.|+.||.|+|..+.
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 556666766665 478 9999999999985 3344456665567888888999999999999985
No 97
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=5.4e-09 Score=105.31 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=87.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccceec--cC-----hhHHHH-HHHH---h--cC--
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAGLG--LD-----RPAQRI-IQSW---L--NG-- 67 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~~~--l~-----~~~~~~-l~~~---~--~~-- 67 (426)
+..+||+|||+|.|||++|+.+++.|.+|+|+||....+..+. .+.++. +. ....+. .+.. + ..
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 3568999999999999999999999999999999876443221 111221 10 011111 1100 0 00
Q ss_pred ------------CchhhhccCcceeeccccccccccccccccccCCCc-chh--ccHHHHHHHHHhcCC-CCe-eEeeee
Q 014324 68 ------------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN-FRA--AHWADLHGLLYNALP-PEI-FLRGHQ 130 (426)
Q Consensus 68 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~r~~l~~~L~~~~~-~~~-i~~~~~ 130 (426)
..+.+.+.+.++... .++.............. ... ..=..+.+.|.+.+. .++ ++.++.
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~ 158 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQ----PDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWF 158 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccC----CCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcE
Confidence 011222233322110 01100000000000000 000 001234555555443 478 999999
Q ss_pred EEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 131 YLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 131 v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
++++..+ ++..+-|...+..+|+...+.|+.||.|+|..+.+
T Consensus 159 ~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 159 SLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 9999874 34334455444456666679999999999999854
No 98
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.02 E-value=5.3e-09 Score=106.10 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=83.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCccee-ccC----h--hHHHHHHHH---h--cC----
Q 014324 6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGL-GLD----R--PAQRIIQSW---L--NG---- 67 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~~-~l~----~--~~~~~l~~~---~--~~---- 67 (426)
.+||+|||||+|||+||+.+++. |.+|+|+||........ ...|. .++ + .....++.+ + ..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 57999999999999999999998 99999999987643221 11111 111 1 111111110 0 00
Q ss_pred ----------CchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CC-e-eEeeeeEEEE
Q 014324 68 ----------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PE-I-FLRGHQYLSF 134 (426)
Q Consensus 68 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~-~-i~~~~~v~~~ 134 (426)
..+.+...+.++.. ..++... .. ......+.-..+.+.|.+.+. .+ + ++.++.++++
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~----~~--g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~L 159 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWK----DENGKYV----RR--GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDL 159 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeee----cCCCCcc----cc--CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEE
Confidence 00112222222111 0011100 00 000001122456666666554 34 7 9999999998
Q ss_pred EEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 135 CISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 135 ~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
..++ +..+.|...+..+|+...+.|+.||.|+|..+.
T Consensus 160 i~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 160 LVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 7543 322223332345666667899999999999875
No 99
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=5.6e-09 Score=105.65 Aligned_cols=163 Identities=20% Similarity=0.166 Sum_probs=87.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCc-ceec--cCh---hHHH-----HHH--------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGPPTGSPTG-AGLG--LDR---PAQR-----IIQ-------- 62 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~~~~~~~~-~~~~--l~~---~~~~-----~l~-------- 62 (426)
.++||+|||||+|||++|+.+++.| .+|+|+||....+..+... .|+. +.+ .+.+ .++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~ 83 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ 83 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence 4689999999999999999999998 8999999998755322111 1211 111 1111 110
Q ss_pred -------HHhcCCchhhhccCcceeeccccccccccccccccccCCCcchhc----c--HHHHHHHHHhcC-C-CCe-eE
Q 014324 63 -------SWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAA----H--WADLHGLLYNAL-P-PEI-FL 126 (426)
Q Consensus 63 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--r~~l~~~L~~~~-~-~~~-i~ 126 (426)
.-.....+.+.+.+.++.. ..++..... .. .......+ + =..+.+.|.+.+ . .++ ++
T Consensus 84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~-~~--~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~ 156 (577)
T PRK06069 84 DAVEVFVREAPEEIRFLDHWGVPWSR----RPDGRISQR-PF--GGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFY 156 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeEe----cCCCcEeee-ec--CCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEE
Confidence 0000001122233333211 011110000 00 00000000 0 023555555544 3 477 99
Q ss_pred eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
.++.++++..+ ++..+.+...+..+|+...+.|+.||.|+|..+.+..
T Consensus 157 ~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~ 204 (577)
T PRK06069 157 DEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG 204 (577)
T ss_pred ECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence 99999999764 3333334333345676667899999999999987543
No 100
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.02 E-value=3.3e-09 Score=104.98 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=33.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+||+|||+|++|+++|+.++++|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 458999999999999999999999999999999874
No 101
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=5.2e-09 Score=105.77 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 111 DLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 111 ~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
.+.+.|.+.+. .++ ++.++.++++..+ ++..+.+...+..+|+...+.|+.||.|+|..+.+
T Consensus 136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 136 AILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 45555666554 478 9999999998764 33323333333457776678999999999999875
No 102
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=9.2e-09 Score=104.05 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=35.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
|.++||+|||+|+|||++|+.+++.|.+|+|+||.+..+
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 355799999999999999999999999999999988754
No 103
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.01 E-value=6.1e-09 Score=105.76 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=88.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceec--cC---hhHHHH-HHH---------------
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLG--LD---RPAQRI-IQS--------------- 63 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~--l~---~~~~~~-l~~--------------- 63 (426)
.+||+|||+|.|||++|+.+++.|.+|+|+||....+..+.. ..++. +. +...+. ++.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 579999999999999999999999999999998765432211 11221 11 111111 110
Q ss_pred -H---hcCCchhhhccCcceeeccccccccccccccccccC------CCcchh-----ccHHHHHHHHHhcC-CCCe-eE
Q 014324 64 -W---LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDD------NFNFRA-----AHWADLHGLLYNAL-PPEI-FL 126 (426)
Q Consensus 64 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~r~~l~~~L~~~~-~~~~-i~ 126 (426)
+ .....+.+.+.+.++.. ..++........... ...... ..-..+.+.|.+.+ +.++ ++
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~----~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~ 205 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSR----TEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFF 205 (635)
T ss_pred HHHHhHHHHHHHHHhCCCcccc----CCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 0 00001223333333221 011110000000000 000000 01134555565544 3578 99
Q ss_pred eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
.++.++++..++++..+-+...+..+|+...+.++.||.|+|..+..
T Consensus 206 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 206 VEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred EeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 99999998764344344455444567887789999999999998754
No 104
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.01 E-value=2.4e-09 Score=103.58 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
++...+.+.|.+.+. .|+ ++++++|.+++..++ .+.|+ ..+| +++||.||.|+|.+|. +.+.+
T Consensus 146 vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~~V~---~~~g---~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 146 VDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN--GVVVR---TTQG---EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eEEEE---ECCC---EEEeCEEEECCCcchHHHHHHh
Confidence 455667777777665 477 999999999885433 45554 3444 3899999999999984 55544
No 105
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.01 E-value=4.4e-09 Score=103.56 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhhc
Q 014324 107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSFL 178 (426)
Q Consensus 107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l~ 178 (426)
++-..+-+.|.+.+. .|+ ++++++|++++.+++ ..|.++..+..+|+..+++||+||.|.|.+| .+++.++
T Consensus 175 Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G 248 (483)
T TIGR01320 175 VDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG 248 (483)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence 555667777766654 478 999999999986433 3455543334455544589999988888765 5776653
No 106
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.01 E-value=5.8e-09 Score=102.15 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=48.2
Q ss_pred hccHHHHHHHHHhcC-CC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 106 AAHWADLHGLLYNAL-PP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 106 ~~~r~~l~~~L~~~~-~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
.++...+.+.|.+.+ .. |+ ++++++|++++..+ +..|+++++...+|+..+++||+||.|.|++|. +.+.+
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 456677777777766 33 67 99999999998642 234555433234453335899999999998874 55555
No 107
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=9e-09 Score=104.15 Aligned_cols=165 Identities=21% Similarity=0.221 Sum_probs=87.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--c---ChhHHH-------------------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--L---DRPAQR------------------- 59 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l---~~~~~~------------------- 59 (426)
..+||+|||+|.|||++|+.+++.|.+|+|+||.......+... .++. + .....+
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v 90 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAI 90 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHH
Confidence 45799999999999999999999999999999986543321110 1111 1 111111
Q ss_pred -HHHHHhcCCchhhhccCcceeeccccccccccccccccccCC-C---cchhc------cHHHHHHHHHhcC-CCCe-eE
Q 014324 60 -IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDN-F---NFRAA------HWADLHGLLYNAL-PPEI-FL 126 (426)
Q Consensus 60 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~------~r~~l~~~L~~~~-~~~~-i~ 126 (426)
.+-+-.....+.+.+.+.++... .++............ . +...+ .=..+.+.|.+.+ +.++ ++
T Consensus 91 ~~~~~~a~~~i~~L~~~Gv~f~~~----~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~ 166 (591)
T PRK07057 91 EFMCREAPNVVYELEHFGMPFDRN----ADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFF 166 (591)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeC----CCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEE
Confidence 11000000011122333332210 111100000000000 0 00000 0023555565544 3577 99
Q ss_pred eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
.++.++++..++++..+.|...+..+|+...+.++.||.|+|..+.+
T Consensus 167 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 167 VEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred eCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 99999998865444344455444556776678999999999999864
No 108
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=8.7e-09 Score=103.60 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=84.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCC-cceec--cC--hhHHHHHHHH---h--c-------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG-SPT-GAGLG--LD--RPAQRIIQSW---L--N------- 66 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~-~~~~~--l~--~~~~~~l~~~---~--~------- 66 (426)
..+||+|||+|.|||+||+.+ +.|.+|+|+||......+ +.. +.++. .. ....+.++.+ + .
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~ 84 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 458999999999999999999 899999999998642211 111 11221 11 1111111111 0 0
Q ss_pred -------CCchhhhccCcceeecccccccccccccccccc-CCCcchh--ccHHHHHHHHHhcCC-CCe-eEeeeeEEEE
Q 014324 67 -------GRPHLLHLATVPLTIDQNQATDNAKVTRTLARD-DNFNFRA--AHWADLHGLLYNALP-PEI-FLRGHQYLSF 134 (426)
Q Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~ 134 (426)
...+.+.+.+.++... .++.......... .....+. ..=..+...|.+.+. .++ +++++.++++
T Consensus 85 ~~~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~L 160 (543)
T PRK06263 85 ILVKEAPKRLKDLEKFGALFDRT----EDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKL 160 (543)
T ss_pred HHHHHHHHHHHHHHHcCCcceeC----CCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeee
Confidence 0011222233322110 0110000000000 0000000 001345555666554 578 9999999999
Q ss_pred EEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 135 CISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 135 ~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
..+++...+.+...+..+|+...+.|+.||.|+|..+.
T Consensus 161 i~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 161 IVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred EEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 86543223334443346777777999999999999875
No 109
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.99 E-value=9.7e-09 Score=103.75 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=86.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceec--c---------------------ChhHH
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLG--L---------------------DRPAQ 58 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~--l---------------------~~~~~ 58 (426)
..+||+|||||.|||+||+.+++. |.+|+|+||....+..+... .++. . .+..+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 82 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV 82 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 458999999999999999999987 47999999997654322111 1111 0 01111
Q ss_pred HHHHHHhcCCchhhhccCcceeeccccccccccccccccccCCC-cchhc--cHHHHHHHHHhcCC--CCe-eEeeeeEE
Q 014324 59 RIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF-NFRAA--HWADLHGLLYNALP--PEI-FLRGHQYL 132 (426)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~r~~l~~~L~~~~~--~~~-i~~~~~v~ 132 (426)
+.+-+-.....+.+.+.+.++.. ..++............. ..... .=..+.+.|.+.+. .++ ++.++.++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~ 158 (582)
T PRK09231 83 EYFVHHCPTEMTQLEQWGCPWSR----KPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVL 158 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCccc----CCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEE
Confidence 11110000001122333333221 01111000000000000 00000 01346666666543 367 89999999
Q ss_pred EEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324 133 SFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR 174 (426)
Q Consensus 133 ~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR 174 (426)
++..+ ++..+-+...+..+|+...+.|+.||.|||..|.+-
T Consensus 159 ~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 159 DILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred EEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 98864 333333433335677766799999999999999764
No 110
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.99 E-value=7.2e-09 Score=102.20 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=48.8
Q ss_pred hccHHHHHHHHHhcCCC-C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhhc
Q 014324 106 AAHWADLHGLLYNALPP-E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSFL 178 (426)
Q Consensus 106 ~~~r~~l~~~L~~~~~~-~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l~ 178 (426)
.++...+.+.|.+.++. + + ++++++|++++.++++ .|+++..+..+|+..+++|++||.|.|.+| .+++.++
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg-~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~G 254 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG-SWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSG 254 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC-CEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 35667788888776654 4 7 9999999999864433 355553333446433589999988888765 5666653
No 111
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=9.2e-09 Score=103.94 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=90.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceecc--C---hhHHH-HHHHH-------------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLGL--D---RPAQR-IIQSW------------- 64 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~l--~---~~~~~-~l~~~------------- 64 (426)
..+||+|||+|.|||+||+.+++.|.+|+|+||....+..+.. ..++.. . ..+.+ .++.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4589999999999999999999999999999999765432211 112211 0 01111 11110
Q ss_pred ------hcCCchhhhccCcceeeccccccccccccccccccC-C---Ccc-hhc-----cHHHHHHHHHhcCC-CCe-eE
Q 014324 65 ------LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDD-N---FNF-RAA-----HWADLHGLLYNALP-PEI-FL 126 (426)
Q Consensus 65 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~-----~r~~l~~~L~~~~~-~~~-i~ 126 (426)
.....+.|.+.+.++.. ..++........... . ... +.+ .=..|...|.+.+. .++ ++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~ 161 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSR----LDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF 161 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCccc----CCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEE
Confidence 00011223333333221 111110000000000 0 000 000 01345556666554 578 99
Q ss_pred eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
.++.++++..++++..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus 162 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 162 SEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred eCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 99999999865444444455444567877779999999999999864
No 112
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.98 E-value=1.2e-08 Score=101.56 Aligned_cols=39 Identities=38% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
.++||+|||+|++|+++|+.++++|.+|+|+||.+..+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 468999999999999999999999999999999987653
No 113
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.4e-08 Score=103.02 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=87.6
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceecc--C---hhHHHH-----HH------------
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLGL--D---RPAQRI-----IQ------------ 62 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~l--~---~~~~~~-----l~------------ 62 (426)
.+||+|||||+|||+||+.+++.|.+|+|+||.......+.. ..|+.. . ....+. ++
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 479999999999999999999999999999998754332111 012211 1 111111 11
Q ss_pred HH---hcCCchhhhccCcceeeccccccccccccccccccC-----CCcchhc------cHHHHHHHHHhcCC-CCe-eE
Q 014324 63 SW---LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDD-----NFNFRAA------HWADLHGLLYNALP-PEI-FL 126 (426)
Q Consensus 63 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------~r~~l~~~L~~~~~-~~~-i~ 126 (426)
.+ .....+.+.+.+.++.. ..++........... ......+ .=..+.+.|.+.+. .++ ++
T Consensus 92 ~l~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~ 167 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSR----TEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFF 167 (598)
T ss_pred HHHHHHHHHHHHHHHcCCccee----cCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 00 00001122233333221 011110000000000 0000000 00245566666554 578 99
Q ss_pred eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
.++.++++..++++..+.|...+..+|+...+.|+.||.|+|..+.
T Consensus 168 ~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 168 IEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred EeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 9999999886443333345444456787778999999999999875
No 114
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.2e-08 Score=103.16 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC---CceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEV---KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~---~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
..+.+.|.+.+. .++ ++.++.++++..+++ +..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 346666776654 478 999999999886442 3333344333456776678999999999999865
No 115
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.97 E-value=1.4e-08 Score=103.14 Aligned_cols=165 Identities=17% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceec--cC---hhHHHH-HHHH-------------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLG--LD---RPAQRI-IQSW------------- 64 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~--l~---~~~~~~-l~~~------------- 64 (426)
..+||+|||||.|||++|+.+++.|.+|+|+||....+..+.. ..++. +. ....+. ++..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 3689999999999999999999999999999998775432211 11221 11 111111 1100
Q ss_pred ------hcCCchhhhccCcceeecccccccccccccccccc-----CCCcchh----cc--HHHHHHHHHhcCC-CCe-e
Q 014324 65 ------LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARD-----DNFNFRA----AH--WADLHGLLYNALP-PEI-F 125 (426)
Q Consensus 65 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~--r~~l~~~L~~~~~-~~~-i 125 (426)
.....+.+.+.+.++... .++.......... ....... .+ =..+.+.|.+.+. .++ +
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i 183 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRT----KDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNF 183 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeC----CCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEE
Confidence 000112233344443221 1111000000000 0000000 01 1356666666554 588 9
Q ss_pred EeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 126 LRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 126 ~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
+.++.++++..++++..+-|...+..+|+...+.|+.||.|+|..+..
T Consensus 184 ~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 184 FIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 999999998864344333354444567887789999999999998753
No 116
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.96 E-value=1.5e-08 Score=102.07 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=87.6
Q ss_pred CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceec--c---------------------ChhHHH
Q 014324 6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLG--L---------------------DRPAQR 59 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~--l---------------------~~~~~~ 59 (426)
.+||+|||||+|||+||+.+++. |.+|+|+||....+..+... .++. . .+..++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 57999999999999999999987 58999999998755422111 1111 0 011111
Q ss_pred HHHHHhcCCchhhhccCcceeeccccccccccccccccccCCC-cchhc--cHHHHHHHHHhcCC--CCe-eEeeeeEEE
Q 014324 60 IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF-NFRAA--HWADLHGLLYNALP--PEI-FLRGHQYLS 133 (426)
Q Consensus 60 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~r~~l~~~L~~~~~--~~~-i~~~~~v~~ 133 (426)
.+-+-.....+.+.+.+.++... .++............. ..... .=..|.+.|.+.+. .++ ++.++.+++
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~ 158 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRK----PDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTD 158 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEec----CCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEE
Confidence 11111110112233333332211 1111000000000000 00000 11346666766543 367 889999999
Q ss_pred EEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 134 FCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 134 ~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
+..+ ++..+-+...+..+|+...+.|+.||.|||..|.+
T Consensus 159 Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 159 LLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred EEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 8864 33333344434567877779999999999999865
No 117
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1.7e-08 Score=101.21 Aligned_cols=167 Identities=21% Similarity=0.241 Sum_probs=88.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh--hHHHHHHHH---h--cC-------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR--PAQRIIQSW---L--NG------- 67 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~--~~~~~l~~~---~--~~------- 67 (426)
..+||+|||+|+|||++|+.+++. .+|+|+||....+..+... .++. +.+ .....++.. + ..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 458999999999999999999986 8999999988654322111 1221 111 111111111 0 00
Q ss_pred -------CchhhhccCcceeeccccccccccccccccccCCCcc-hhc-----cHHHHHHHHHhcCC--CCe-eEeeeeE
Q 014324 68 -------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNF-RAA-----HWADLHGLLYNALP--PEI-FLRGHQY 131 (426)
Q Consensus 68 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~r~~l~~~L~~~~~--~~~-i~~~~~v 131 (426)
..+.+.+.+.++..... ..+. ............. +.+ .-..+.+.|.+.+. .++ |+.++.+
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~--~~g~-~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v 162 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQ--ANGE-EGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNA 162 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCC--CCcc-ccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEe
Confidence 01122223332211000 0000 0000000000000 001 11346666666543 378 9999999
Q ss_pred EEEEEec-----CCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324 132 LSFCISE-----VKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 132 ~~~~~~~-----~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
+++..++ ++..+.|.+.+..+|+...+.++.||.|+|..+.+..
T Consensus 163 ~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 163 IDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred eeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 9987643 1333345554455777777999999999999987654
No 118
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.94 E-value=2.8e-09 Score=102.91 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=78.4
Q ss_pred EEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccce-eccChh--HHHHHHHHhcCCchhhh----ccCcceee
Q 014324 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAG-LGLDRP--AQRIIQSWLNGRPHLLH----LATVPLTI 81 (426)
Q Consensus 10 ~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~-~~l~~~--~~~~l~~~~~~~~~~~~----~~~~~~~~ 81 (426)
+|||||+|||++|+.|+++|.+|+|+||.+.++.... .|.| ..+... ..++.+.++.. .+.+. ........
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~-~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRN-GKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCC-cHHHHHHHHhCCHHHHH
Confidence 5999999999999999999999999999988753210 1111 112211 11122222110 11111 00000000
Q ss_pred ccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324 82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK 159 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~ 159 (426)
.+. ...|..+.. ......++ .......+.+.|.+.++ .++ ++++++++++..+ +..+.++ . ++.. +.
T Consensus 80 ~~~-~~~Gv~~~~-~~~g~~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~~v~---~-~~~~--i~ 148 (400)
T TIGR00275 80 DFF-ESLGLELKV-EEDGRVFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DNGFGVE---T-SGGE--YE 148 (400)
T ss_pred HHH-HHcCCeeEE-ecCCEeEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CCeEEEE---E-CCcE--EE
Confidence 000 000100000 00000011 11123556666666664 477 9999999999753 2345554 2 3443 78
Q ss_pred ecEEEeccCCch
Q 014324 160 GNLLVAADGCLS 171 (426)
Q Consensus 160 ~d~vI~AdG~~S 171 (426)
+|.||.|+|.+|
T Consensus 149 ad~VIlAtG~~s 160 (400)
T TIGR00275 149 ADKVILATGGLS 160 (400)
T ss_pred cCEEEECCCCcc
Confidence 999999999987
No 119
>PRK07121 hypothetical protein; Validated
Probab=98.94 E-value=4.9e-09 Score=104.32 Aligned_cols=39 Identities=36% Similarity=0.454 Sum_probs=35.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..+||+|||+|.||+++|+.++++|.+|+|+||....+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 358999999999999999999999999999999987553
No 120
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1.6e-08 Score=100.73 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=86.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh-hHH-HHHHHH---h-----------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR-PAQ-RIIQSW---L----------- 65 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~-~~~-~~l~~~---~----------- 65 (426)
..+||+|||+|.|||++|+.+++ |.+|+|+||.+..+..+... .++. +++ .+. ..++.+ +
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 46899999999999999999976 89999999998755433211 1221 111 111 111111 0
Q ss_pred -----cCCchhhhccCcceeeccccccccccccccccccCCCcch----hccHHHHHHHHHhcCCCCe-eEeeeeEEEEE
Q 014324 66 -----NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFR----AAHWADLHGLLYNALPPEI-FLRGHQYLSFC 135 (426)
Q Consensus 66 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~ 135 (426)
....+.+.+.+.++... .++................ ...-..+.+.|.+.+..++ ++.++.++++.
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li 156 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGD----ETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLI 156 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccC----CCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhhee
Confidence 00011223333332210 0111000000000000000 0011345566666666688 99999999987
Q ss_pred EecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 136 ISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 136 ~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
.+ ++..+.+...+ .+|+...+.|+.||.|+|..+.+
T Consensus 157 ~~-~g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 157 IE-NGRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred ec-CCEEEEEEEEE-CCCcEEEEEcCeEEEecCCCccc
Confidence 53 33223344332 45666678999999999998863
No 121
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=2.3e-08 Score=101.90 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=34.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+||+|||||.|||++|+.+++.|.+|+|+||....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 35899999999999999999999999999999997643
No 122
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.92 E-value=2.2e-08 Score=99.43 Aligned_cols=162 Identities=20% Similarity=0.199 Sum_probs=83.7
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh-hH-HHHHHHH----------------
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR-PA-QRIIQSW---------------- 64 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~-~~-~~~l~~~---------------- 64 (426)
.+||+|||+|+|||++|+.+++.|. |+|+||.+.....+... .++. +.+ .+ ...++.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 99999997644322111 1111 111 00 0111100
Q ss_pred ---hcCCchhhhccCcceeeccccccccccccccccccCCCc-ch--hccHHHHHHHHHhcCC--CCe-eEeeeeEEEEE
Q 014324 65 ---LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN-FR--AAHWADLHGLLYNALP--PEI-FLRGHQYLSFC 135 (426)
Q Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~ 135 (426)
.....+.+.+.+.++.. ..++.............. +. ...-..+.+.|.+.+. .++ +++++.++++.
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~ 156 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDR----HEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLL 156 (488)
T ss_pred HHhHHHHHHHHHHcCCccee----CCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeee
Confidence 00001122222222211 001100000000000000 00 0011456667777654 477 99999999998
Q ss_pred EecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324 136 ISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 136 ~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
.+ ++..+.+...+ .+....+.++.||.|+|..|.+..
T Consensus 157 ~~-~g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 157 IE-TGRVVGVWVWN--RETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred cc-CCEEEEEEEEE--CCcEEEEEcCEEEECCCcccCCCC
Confidence 53 32222244322 244446899999999999998654
No 123
>PLN02815 L-aspartate oxidase
Probab=98.90 E-value=2.4e-08 Score=100.59 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=87.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh--hHHHHHHHH---------------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR--PAQRIIQSW--------------- 64 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~--~~~~~l~~~--------------- 64 (426)
..+||+|||+|.|||++|+.+++.| +|+|+||....+..+... .++. +.+ .....++.+
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~ 106 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRV 106 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHH
Confidence 4589999999999999999999999 999999998754322111 1221 111 111111111
Q ss_pred ----hcCCchhhhccCcceeeccccccccccccccccccCCCcc---hhccHHHHHHHHHhcCC--CCe-eEeeeeEEEE
Q 014324 65 ----LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNF---RAAHWADLHGLLYNALP--PEI-FLRGHQYLSF 134 (426)
Q Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~ 134 (426)
.....+.|.+.+.++... .++............... ....=..+.+.|.+.+. .++ |+.++.++++
T Consensus 107 ~~~~s~e~i~~L~~~Gv~F~~~----~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L 182 (594)
T PLN02815 107 VCTEGPERVKELIAMGASFDHG----EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL 182 (594)
T ss_pred HHHHHHHHHHHHHHhCCeeeec----CCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence 000011222333332210 011000000000000000 00011345556666553 377 9999999998
Q ss_pred EEecCCc---eEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 135 CISEVKT---TVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 135 ~~~~~~~---~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
..++++. .+-+...+..+|+...+.++.||.|+|..+.+
T Consensus 183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 224 (594)
T PLN02815 183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI 224 (594)
T ss_pred eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence 8654432 23354444557777778999999999998753
No 124
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.90 E-value=1.9e-08 Score=94.50 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=76.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEE-cccCCCCCCCCCcceeccChhHH----HHHHHHhcCCchhhhccCcceeec
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVL-EKAGGPPTGSPTGAGLGLDRPAQ----RIIQSWLNGRPHLLHLATVPLTID 82 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~-E~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 82 (426)
||+|||||.||+.||+++++.|.+|.++ ++...... .++.=.+...+. +-++.+|-...........+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~---~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~- 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE---MSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM- 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT-----SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc---ccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc-
Confidence 7999999999999999999999999999 44444432 222111111122 22233332111111111111111
Q ss_pred cccccccccccccccccCCCcchhccHHHHHHHHHhcCCC--CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324 83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG 160 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~ 160 (426)
...+.|... ...-..++|..+.+.+.+.++. ++.....+|+++..+. +..+.|. +.+|+. +.+
T Consensus 77 -lN~skGpav--------~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~-~~v~GV~---~~~g~~--~~a 141 (392)
T PF01134_consen 77 -LNRSKGPAV--------HALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVEN-GKVKGVV---TKDGEE--IEA 141 (392)
T ss_dssp -ESTTS-GGC--------TEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECT-TEEEEEE---ETTSEE--EEE
T ss_pred -ccccCCCCc--------cchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecC-CeEEEEE---eCCCCE--Eec
Confidence 001111000 0111257888888888887653 6633578899998643 3333455 677875 899
Q ss_pred cEEEeccCC
Q 014324 161 NLLVAADGC 169 (426)
Q Consensus 161 d~vI~AdG~ 169 (426)
|.||.|+|.
T Consensus 142 ~~vVlaTGt 150 (392)
T PF01134_consen 142 DAVVLATGT 150 (392)
T ss_dssp CEEEE-TTT
T ss_pred CEEEEeccc
Confidence 999999999
No 125
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.89 E-value=1.9e-08 Score=93.58 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=31.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+||+||||||||+++|..|++.|++|+|||+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 689999999999999999999999999999876
No 126
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.5e-08 Score=91.71 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=31.1
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG 40 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (426)
|..+||+|||||||||+||+.++++|++ ++|+|+...
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~ 38 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP 38 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence 3568999999999999999999999999 655565543
No 127
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.88 E-value=1.4e-08 Score=88.13 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=77.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCcc----eeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTGA----GLGLDRPAQRIIQSWLNGRPHLLHLATVP 78 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (426)
+|+|||+|++|+++|..|+.+|++|+||||..-.+..- .-|+ .-.+.++.-.+++- .+.+.+.+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~-----Ve~~~~~glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRA-----VEALRDDGLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHH-----HHHHHhCCce
Confidence 69999999999999999999999999999998765421 0011 12244443333332 1222223322
Q ss_pred eee-ccccccccccccccccccCCCcch-hccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324 79 LTI-DQNQATDNAKVTRTLARDDNFNFR-AAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV 155 (426)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~ 155 (426)
... ...+...+.. ........++. ...-..|-+.|. ... |.++++|+.+... ++.++++ .++|+.
T Consensus 78 ~~W~~~~~~~~~~~---~~~~~d~~pyvg~pgmsalak~LA----tdL~V~~~~rVt~v~~~--~~~W~l~---~~~g~~ 145 (331)
T COG3380 78 DVWTPAVWTFTGDG---SPPRGDEDPYVGEPGMSALAKFLA----TDLTVVLETRVTEVART--DNDWTLH---TDDGTR 145 (331)
T ss_pred eeccccccccccCC---CCCCCCCCccccCcchHHHHHHHh----ccchhhhhhhhhhheec--CCeeEEE---ecCCCc
Confidence 111 0111111110 00111111121 122244445444 334 8899999999875 4577776 556654
Q ss_pred EEEeecEEEecc
Q 014324 156 IEIKGNLLVAAD 167 (426)
Q Consensus 156 ~~~~~d~vI~Ad 167 (426)
...+|.||.|-
T Consensus 146 -~~~~d~vvla~ 156 (331)
T COG3380 146 -HTQFDDVVLAI 156 (331)
T ss_pred -ccccceEEEec
Confidence 35788777763
No 128
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.87 E-value=3.1e-08 Score=97.99 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=81.2
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceecc---Chh-HHHHHHHHhcCCchhhhccCcceeec
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGL---DRP-AQRIIQSWLNGRPHLLHLATVPLTID 82 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l---~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (426)
+||+|||||+||+.+|..+++.|.+|+|+|+....... .++.-.+ ... ..+-++.+|...............
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~--~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r-- 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK--CSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFR-- 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC--CCccccccccccchhhhhhhcccchHHHHHHhhceehe--
Confidence 69999999999999999999999999999997542211 1110000 000 112222222100111111111110
Q ss_pred cccccccccccccccccCCCcchhccHHHHHHHHHhcCCC--CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324 83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG 160 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~ 160 (426)
.....+ +. ....+-..+++..+.+.+.+.+++ ++..+...++++..++++..+.|. ..+|.. +.|
T Consensus 77 --~ln~sk--gp----AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~---t~~G~~--I~A 143 (617)
T TIGR00136 77 --VLNSSK--GP----AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVV---TQDGLK--FRA 143 (617)
T ss_pred --ecccCC--CC----cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEE---ECCCCE--EEC
Confidence 000000 00 000111356777788888776653 554455678887654333334454 456764 899
Q ss_pred cEEEeccCCch
Q 014324 161 NLLVAADGCLS 171 (426)
Q Consensus 161 d~vI~AdG~~S 171 (426)
+.||.|+|.++
T Consensus 144 d~VILATGtfL 154 (617)
T TIGR00136 144 KAVIITTGTFL 154 (617)
T ss_pred CEEEEccCccc
Confidence 99999999995
No 129
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.87 E-value=1.7e-08 Score=99.75 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=36.8
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
|.|..+||+||||||+|+++|+.|+++|.+|+|||+...++
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~G 41 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG 41 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence 34577999999999999999999999999999999976654
No 130
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.87 E-value=3.6e-08 Score=99.86 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=37.8
Q ss_pred Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 123 EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 123 ~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
++ +++++.++++..++++..+-|...+..+|+...+.|+.||.|+|..+.+
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence 67 9999999999865443334455444456776678999999999998764
No 131
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.87 E-value=1.7e-08 Score=99.69 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=34.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.+|||+||||||+|+.+|..|++.|.+|+|+|+.+.++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~G 40 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLG 40 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 45999999999999999999999999999999976543
No 132
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.86 E-value=2.3e-08 Score=97.49 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=33.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..+||+|||+|.|||+||+.++ .|.+|+|+||.+..+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 4689999999999999999985 7999999999987653
No 133
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.85 E-value=4.3e-08 Score=100.13 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
|.+..+||+|||||.|||++|+.+++.|.+|+|+||.+..+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 34467899999999999999999999999999999987754
No 134
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.84 E-value=5.6e-06 Score=82.01 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=44.7
Q ss_pred cEEEEcCChHHHHHHHHHHHc------CCcEEEEcccCCCCCCC----------CCcce--eccChhHHHHHHHHhcC
Q 014324 8 KAVIVGGSIAGISCAHALLRA------GWDVVVLEKAGGPPTGS----------PTGAG--LGLDRPAQRIIQSWLNG 67 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~----------~~~~~--~~l~~~~~~~l~~~~~~ 67 (426)
+|+|||||+|||++|+.|++. |++|+|+|+++.++... ..|.. ..-.+...++++++|+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 699999999999999999986 48999999999886521 11211 11235567888888863
No 135
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.83 E-value=5.7e-08 Score=95.56 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHc-C-CcEEEEcccCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRA-G-WDVVVLEKAGGP 41 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~-G-~~v~v~E~~~~~ 41 (426)
...+||+|||||+.|+++|+.|++. + .+|+|+||...+
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~ 82 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDF 82 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcch
Confidence 3568999999999999999999996 4 699999998643
No 136
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=3e-08 Score=99.18 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=72.5
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
...+||+||||||||+++|..|++.|++|+|+|+. ++ .-+. . ..+. +. .+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~G------G~~~-~--------~~~~---~~-----~~----- 258 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FG------GQVL-D--------TMGI---EN-----FI----- 258 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC------Ceee-c--------cCcc---cc-----cC-----
Confidence 34689999999999999999999999999999753 21 1110 0 0000 00 00
Q ss_pred ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
+ +.......+.+.|.+.+. .++ +++++++.++...+ ..++++ ..+|+. +++|
T Consensus 259 -----~--------------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~---~~~g~~--i~a~ 312 (517)
T PRK15317 259 -----S--------------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVE---LANGAV--LKAK 312 (517)
T ss_pred -----C--------------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEE---ECCCCE--EEcC
Confidence 0 000112345555555544 367 88899999998643 345555 456654 8999
Q ss_pred EEEeccCCch
Q 014324 162 LLVAADGCLS 171 (426)
Q Consensus 162 ~vI~AdG~~S 171 (426)
.||.|+|..+
T Consensus 313 ~vViAtG~~~ 322 (517)
T PRK15317 313 TVILATGARW 322 (517)
T ss_pred EEEECCCCCc
Confidence 9999999975
No 137
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.82 E-value=3.9e-08 Score=97.01 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=32.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 138
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=3.3e-08 Score=97.67 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.+|||+||||||+|+++|..++++|.+|+|+|++..++
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~G 39 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLG 39 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcee
Confidence 45999999999999999999999999999999865543
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.80 E-value=3.2e-08 Score=94.80 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=32.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+||+|||||++|+++|+.|+++|.+|+|+|+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 58999999999999999999999999999998753
No 140
>PRK14694 putative mercuric reductase; Provisional
Probab=98.79 E-value=1.1e-07 Score=94.09 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
||...++||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 888889999999999999999999999999999999863
No 141
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.78 E-value=3.7e-08 Score=97.22 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=33.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (426)
.+.||+|||||++|+++|+.|+++ |.+|+|+|+...
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 357999999999999999999998 899999999764
No 142
>PLN02612 phytoene desaturase
Probab=98.78 E-value=2.4e-06 Score=86.19 Aligned_cols=63 Identities=27% Similarity=0.248 Sum_probs=48.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-----------Ccc--eeccChhHHHHHHHHhcC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-----------TGA--GLGLDRPAQRIIQSWLNG 67 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-----------~~~--~~~l~~~~~~~l~~~~~~ 67 (426)
...+|+|||||++||++|+.|+++|++|+|+|++..++.... .|. .....++..++++++|+.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~ 167 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIN 167 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCc
Confidence 357899999999999999999999999999999987653110 111 122457788999999883
No 143
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.76 E-value=1.6e-06 Score=77.99 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=88.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCcceeccC---------hhHHHHHHHHhcCCchhhhc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTGAGLGLD---------RPAQRIIQSWLNGRPHLLHL 74 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~~~~~l~---------~~~~~~l~~~~~~~~~~~~~ 74 (426)
...||+|||||+-|+++|+.|+|+|.++.++|+-+.+...+ ..|..=.+- .-..++++.|-.. +.+..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~--~~~~g 83 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNL--PEESG 83 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhC--hhhhc
Confidence 45799999999999999999999999999999999886421 111110011 1223344444221 11111
Q ss_pred cCcceeeccccccc------------------------ccccccccccc----C------CCcchhccHHHHHHHHHhcC
Q 014324 75 ATVPLTIDQNQATD------------------------NAKVTRTLARD----D------NFNFRAAHWADLHGLLYNAL 120 (426)
Q Consensus 75 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~----~------~~~~~~~~r~~l~~~L~~~~ 120 (426)
.............+ ++.+.+..... + ......+.-..-.+.|+..+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 00100000000000 00000000000 0 00112234445556677766
Q ss_pred CC-Ce-eEeeeeEEEEEEecC-CceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324 121 PP-EI-FLRGHQYLSFCISEV-KTTVTVKAKVLQTDEVIEIKGNLLVAADGCL 170 (426)
Q Consensus 121 ~~-~~-i~~~~~v~~~~~~~~-~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~ 170 (426)
++ |+ ++.+.+++.+...++ +..+.|+ +.+|.. +.++-+|.+.|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~---Tt~gs~--Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQ---TTDGSI--YHAKKIIFTVGAW 211 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEE---eccCCe--eecceEEEEecHH
Confidence 64 77 999999999886543 4456666 677876 7899999999985
No 144
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.75 E-value=2.8e-07 Score=92.09 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..+||+|||+| +||++|+.+++.|.+|+|+||....+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 46899999999 999999999999999999999987553
No 145
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.75 E-value=1.6e-07 Score=94.67 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=34.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.++||+|||+|.|||++|+.+++.|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~ 38 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE 38 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 568999999999999999999999999999999993
No 146
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.73 E-value=2.4e-07 Score=98.37 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 358999999999999999999999999999999885
No 147
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.73 E-value=1.5e-08 Score=71.05 Aligned_cols=32 Identities=38% Similarity=0.599 Sum_probs=29.8
Q ss_pred EEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 11 IVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 11 IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
|||||++||++|+.|+++|++|+|||+.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999999875
No 148
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.72 E-value=8e-08 Score=94.33 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|||+||||||||+++|..|++.|.+|+|+||.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 469999999999999999999999999999999875
No 149
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.72 E-value=1.8e-07 Score=94.29 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=36.0
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~g 43 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYG 43 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 457899999999999999999999999999999998764
No 150
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.71 E-value=1.2e-07 Score=95.09 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=83.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh--hHHHHHHHH---h-----------
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR--PAQRIIQSW---L----------- 65 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~--~~~~~l~~~---~----------- 65 (426)
..+||+|||+|.|||+||+.++ .|.+|+|+||.+..+..+... .++. +.+ .....++.+ +
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 86 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRF 86 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4689999999999999999996 599999999998754322111 1221 111 111111111 0
Q ss_pred -----cCCchhhhccCcceeecccc----ccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEE
Q 014324 66 -----NGRPHLLHLATVPLTIDQNQ----ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLS 133 (426)
Q Consensus 66 -----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~ 133 (426)
....+.+.+.+.++...... ...+....+.... ..... ..+...|.+.+. .++ |+.++.+++
T Consensus 87 ~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~-----~d~~G-~~i~~~L~~~~~~~~gi~i~~~~~v~~ 160 (553)
T PRK07395 87 LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHA-----ADTTG-RAIVTTLTEQVLQRPNIEIISQALALS 160 (553)
T ss_pred HHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEe-----CCCCh-HHHHHHHHHHHhhcCCcEEEECcChhh
Confidence 00011222333332210000 0000000000000 00011 345555666553 378 999999999
Q ss_pred EEEecC-CceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 134 FCISEV-KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 134 ~~~~~~-~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
+..+++ +..+-+.. ..+|....+.++-||.|+|..+.
T Consensus 161 Li~~~~~g~v~Gv~~--~~~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 161 LWLEPETGRCQGISL--LYQGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred heecCCCCEEEEEEE--EECCeEEEEEcCEEEEcCCCCcc
Confidence 986532 32233333 24666666899999999999764
No 151
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.71 E-value=1.2e-07 Score=94.06 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
..|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999999999999999999999999999986
No 152
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.70 E-value=2.5e-07 Score=93.58 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=35.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
.++||+|||+|++||++|+.++++|.+|+|+||.+..+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 358999999999999999999999999999999987543
No 153
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.70 E-value=1.2e-07 Score=94.32 Aligned_cols=168 Identities=19% Similarity=0.210 Sum_probs=90.1
Q ss_pred CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cC--h----hHHHHH-HHH--------
Q 014324 3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LD--R----PAQRII-QSW-------- 64 (426)
Q Consensus 3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~--~----~~~~~l-~~~-------- 64 (426)
...++||+|||||.|||.+|+.++..|++|+|+||....+..+... .|+. +. . .+.+.+ ...
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~ 82 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLG 82 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcC
Confidence 3467899999999999999999999999999999999877432110 1111 11 0 011111 000
Q ss_pred -----------hcCCchhhhccCcceeecccccccccc----ccccccccCCCcchhccHHHHHHHHHhcC-C-CCe-eE
Q 014324 65 -----------LNGRPHLLHLATVPLTIDQNQATDNAK----VTRTLARDDNFNFRAAHWADLHGLLYNAL-P-PEI-FL 126 (426)
Q Consensus 65 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~-~~~-i~ 126 (426)
.+...+.+...+.++. ...+|.. ++........+...... ..+...|.+.+ + .++ ++
T Consensus 83 dqd~i~~~~~~ap~~v~~Le~~G~~f~----r~~~G~~~~r~fgg~~~~rt~~~~~~tG-~~ll~~L~~~~~~~~~~~~~ 157 (562)
T COG1053 83 DQDAVEAFADEAPEAVDELEKWGVPFS----RTEDGRIYQRRFGGHSKPRTCFAADKTG-HELLHTLYEQLLKFSGIEIF 157 (562)
T ss_pred CHHHHHHHHHhhHHHHHHHHHhCCCcc----cCCCccccccccCCcCCCcceecCCCCc-HHHHHHHHHHHHHhhcchhh
Confidence 0000112222222211 1111110 00000000000011111 22334444433 2 244 67
Q ss_pred eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175 (426)
Q Consensus 127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~ 175 (426)
-+..++++..+++.....+...+..+|+...+.++-||.|+|....+..
T Consensus 158 ~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~ 206 (562)
T COG1053 158 DEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYP 206 (562)
T ss_pred hhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEe
Confidence 7788888876555434556666688898888999999999999884433
No 154
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.70 E-value=4.2e-07 Score=98.85 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=36.1
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+.++||+|||+|.||++||+.+++.|.+|+|+||....+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 3468999999999999999999999999999999987653
No 155
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.70 E-value=1.4e-07 Score=94.33 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=69.6
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ 83 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
...+||+||||||||+++|..|++.|++|+|+|.. ++ .-+ .. ..+. ...
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~G------G~~-~~--------~~~~------~~~-------- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IG------GQV-KD--------TVGI------ENL-------- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC------Ccc-cc--------CcCc------ccc--------
Confidence 34689999999999999999999999999999742 11 101 00 0000 000
Q ss_pred ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
. + .. ......+.+.+.+.++ .++ ++.+++|.++..++ ..+.++ .++|+. +++|
T Consensus 259 ~----~----~~----------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~---~~~g~~--i~~d 313 (515)
T TIGR03140 259 I----S----VP----------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED--GLIVVT---LESGEV--LKAK 313 (515)
T ss_pred c----c----cC----------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEE---ECCCCE--EEeC
Confidence 0 0 00 0011333344444333 367 88899999987533 345554 456654 8999
Q ss_pred EEEeccCCch
Q 014324 162 LLVAADGCLS 171 (426)
Q Consensus 162 ~vI~AdG~~S 171 (426)
.||.|+|...
T Consensus 314 ~lIlAtGa~~ 323 (515)
T TIGR03140 314 SVIVATGARW 323 (515)
T ss_pred EEEECCCCCc
Confidence 9999999874
No 156
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.69 E-value=1.3e-07 Score=93.45 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=33.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
..|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999999999999999999999999876
No 157
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.68 E-value=3.9e-07 Score=91.99 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=37.3
Q ss_pred Ce-eEeeeeEEEEEEecC--CceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 123 EI-FLRGHQYLSFCISEV--KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 123 ~~-i~~~~~v~~~~~~~~--~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
++ ++.++.++++..+++ +..+-|...+..+|+...+.|+.||.|+|..+.
T Consensus 140 ~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 140 LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 35 889999999987542 334445554556787777999999999999873
No 158
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.67 E-value=8.8e-08 Score=94.17 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=31.7
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999984
No 159
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.67 E-value=5.6e-07 Score=91.21 Aligned_cols=43 Identities=30% Similarity=0.377 Sum_probs=38.8
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
|+...++||+|||+|++|+++|+.++++|.+|+|+||....+.
T Consensus 4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 5566789999999999999999999999999999999987653
No 160
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.67 E-value=2.1e-07 Score=93.85 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=32.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
..+||+|||||||||++|..|+++|++|+|||+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 34899999999999999999999999999999853
No 161
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.66 E-value=2.9e-06 Score=82.04 Aligned_cols=38 Identities=42% Similarity=0.509 Sum_probs=35.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.++||+|||||++|+++|+.|+++|.+|+|+|+.....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 56899999999999999999999999999999998754
No 162
>PRK10262 thioredoxin reductase; Provisional
Probab=98.66 E-value=2.3e-07 Score=87.21 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
|...+.+||+|||||||||++|..|+++|++|++||+.
T Consensus 1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 66678899999999999999999999999999999964
No 163
>PRK12839 hypothetical protein; Provisional
Probab=98.66 E-value=6.4e-07 Score=90.32 Aligned_cols=40 Identities=33% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
...+||+|||+|++|+++|+.+++.|.+|+|+||...++.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3568999999999999999999999999999999877653
No 164
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.66 E-value=8.8e-08 Score=90.00 Aligned_cols=153 Identities=13% Similarity=0.039 Sum_probs=79.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcc------
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP------ 78 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~------ 78 (426)
.+|+|+||.||++|++|++|...+ .++..|||++....+ .|+.+....+ .. ..++.....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh----~gmll~~~~~------q~---~fl~Dlvt~~~P~s~ 68 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWH----PGMLLPGARM------QV---SFLKDLVTLRDPTSP 68 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TT----GGG--SS-B-------SS----TTSSSSTTT-TTST
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcC----CccCCCCCcc------cc---ccccccCcCcCCCCc
Confidence 479999999999999999999886 999999999986532 2332222111 11 111111111
Q ss_pred eeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCC--ceEEEEEEeccCCc
Q 014324 79 LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVK--TTVTVKAKVLQTDE 154 (426)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~--~~v~v~~~~~~~g~ 154 (426)
..+...-...+. +... ...+...+.|..+.+++.-.++. .. ++++++|++|+...+. ..+.|+.++ .+|+
T Consensus 69 ~sflnYL~~~~r-l~~f----~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~ 142 (341)
T PF13434_consen 69 FSFLNYLHEHGR-LYEF----YNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGD 142 (341)
T ss_dssp TSHHHHHHHTT--HHHH----HHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-
T ss_pred ccHHHHHHHcCC-hhhh----hhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCC
Confidence 100000001111 0000 01123456788888888765554 34 8999999999987654 346666554 6777
Q ss_pred eEEEeecEEEeccCCchhhhhhh
Q 014324 155 VIEIKGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 155 ~~~~~~d~vI~AdG~~S~vR~~l 177 (426)
..++.|+-||.|.|....+-..+
T Consensus 143 ~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 143 GETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEEEEESEEEE----EE---GGG
T ss_pred eeEEEeCeEEECcCCCCCCCcch
Confidence 77899999999999554444443
No 165
>PRK09897 hypothetical protein; Provisional
Probab=98.65 E-value=2.1e-07 Score=92.09 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=31.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPP 42 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~ 42 (426)
++|+||||||+|+++|..|.+.+ ++|+|||++..++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 48999999999999999998764 5899999988765
No 166
>PRK06370 mercuric reductase; Validated
Probab=98.64 E-value=2.4e-07 Score=91.61 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=33.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
|.++||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 356999999999999999999999999999999864
No 167
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.64 E-value=3.9e-07 Score=75.80 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=27.3
Q ss_pred EEEcCChHHHHHHHHHHHc-----CCcEEEEcccCC
Q 014324 10 VIVGGSIAGISCAHALLRA-----GWDVVVLEKAGG 40 (426)
Q Consensus 10 ~IvGaG~aGl~~A~~L~~~-----G~~v~v~E~~~~ 40 (426)
+||||||+|++++..|.++ ..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999887 579999999544
No 168
>PLN02507 glutathione reductase
Probab=98.63 E-value=2.9e-07 Score=91.49 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=31.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
+|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 169
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.62 E-value=3e-07 Score=90.05 Aligned_cols=31 Identities=39% Similarity=0.610 Sum_probs=29.2
Q ss_pred EEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 11 IVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 11 IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
|||+|.+|+++|+.++++|.+|+|+||.+..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~ 31 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRA 31 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 7999999999999999999999999998753
No 170
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.61 E-value=3.7e-07 Score=86.16 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=50.8
Q ss_pred hccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 106 AAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 106 ~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
.++.+.|-+.|.+.+. .++ ++++++|++++...+ ..|.|++++..+|+..++++++|+..-|++|-
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 3555666666666553 367 999999999997544 45777777778888889999999999998875
No 171
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.61 E-value=3.2e-07 Score=90.14 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=32.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+|||+||||||+|+++|+.|++.|++|+|+||..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 5899999999999999999999999999999853
No 172
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.60 E-value=3.7e-07 Score=91.09 Aligned_cols=35 Identities=43% Similarity=0.502 Sum_probs=31.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
..+||+|||+|.|||++|+.++ |.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~ 42 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLG 42 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCC
Confidence 4589999999999999999997 5699999999873
No 173
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.60 E-value=3.1e-07 Score=90.92 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=32.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.|||+||||||+|+++|..|+++|.+|+|+|+ ..++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~G 36 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLG 36 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCC
Confidence 38999999999999999999999999999999 5543
No 174
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.57 E-value=4.3e-07 Score=90.02 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (426)
..|||+||||||+|+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 175
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.56 E-value=4.4e-07 Score=91.95 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+||+|||+|++|+++|+.++++|.+|+||||.+..+
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~g 48 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFG 48 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 46899999999999999999999999999999987654
No 176
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.56 E-value=1.3e-07 Score=82.35 Aligned_cols=33 Identities=45% Similarity=0.731 Sum_probs=31.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987765
No 177
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.55 E-value=2.1e-06 Score=86.58 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=35.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.++||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~g 42 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVG 42 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 36899999999999999999999999999999987654
No 178
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=6.5e-07 Score=88.59 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.++||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3599999999999999999999999999999986
No 179
>PRK06116 glutathione reductase; Validated
Probab=98.54 E-value=3.8e-07 Score=89.90 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=32.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 180
>PTZ00058 glutathione reductase; Provisional
Probab=98.53 E-value=5.6e-07 Score=90.08 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=33.0
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
..+|||+||||||+|+++|..+++.|.+|+|+||.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999999999999999986
No 181
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.53 E-value=1.9e-06 Score=86.75 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..+||+|||+| +|+++|+.+++.|.+|+|+||.+..+.
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 46899999999 899999999999999999999987664
No 182
>PRK13748 putative mercuric reductase; Provisional
Probab=98.53 E-value=5.1e-07 Score=91.64 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999987
No 183
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.53 E-value=2.9e-07 Score=87.42 Aligned_cols=116 Identities=13% Similarity=0.015 Sum_probs=68.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CC---c-ceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PT---G-AGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI 81 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~---~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (426)
.||+|||||++|+.+|+.|+++|++|+|+|+++.+.... .. + ..+..+..+...+...|+. .+++...+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll-~~em~~lgsl~-- 79 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLL-KEEMRRLGSLI-- 79 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCch-HHHHHHhcchh--
Confidence 489999999999999999999999999999987663210 01 1 2334444555556666652 23333322210
Q ss_pred ccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEE
Q 014324 82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFC 135 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~ 135 (426)
..... ...........++|..+.+.|.+.++. ++ ++ ..+|+++.
T Consensus 80 ----~~aad-----~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 80 ----MEAAD-----AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred ----eeccc-----ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 00000 000011223467888899988887653 55 54 44666653
No 184
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.52 E-value=6.4e-07 Score=84.82 Aligned_cols=160 Identities=23% Similarity=0.260 Sum_probs=87.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--Cc-ceeccC---------------------hhHHHHHHH
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP--TG-AGLGLD---------------------RPAQRIIQS 63 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~--~~-~~~~l~---------------------~~~~~~l~~ 63 (426)
||+|||+|.|||++|+.|.+. ++|+|+-|.+.....+. +| -...+. +.+.+.+-.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999998 99999999987642221 11 111111 122222222
Q ss_pred HhcCCchhhhccCcceeecccc-c----cccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEE
Q 014324 64 WLNGRPHLLHLATVPLTIDQNQ-A----TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFC 135 (426)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~ 135 (426)
-+....+.+...+.++...... + ..+-.-.+++.... ... ..+.+.|.+.++ .++ +..++.+.++.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG-----~~I~~~L~~~v~~~p~I~v~e~~~a~~li 161 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATG-----KEIMTALLKKVRNRPNITVLEGAEALDLI 161 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-Ccc-----HHHHHHHHHHHhcCCCcEEEecchhhhhh
Confidence 2221123344444443321110 0 00000011111111 111 456666777665 478 88888888887
Q ss_pred EecCCceE-EEEEEeccCCceEEEeecEEEeccCCchhhhhh
Q 014324 136 ISEVKTTV-TVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS 176 (426)
Q Consensus 136 ~~~~~~~v-~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~ 176 (426)
.+++. .+ -+.+. ..+++..++.++.||.|+|..+.+=+.
T Consensus 162 ~~~~~-~~~Gv~~~-~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 162 IEDGI-GVAGVLVL-NRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred hcCCc-eEeEEEEe-cCCCeEEEEecCeEEEecCCCcccccc
Confidence 64442 23 33322 122245679999999999998876544
No 185
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.51 E-value=1.8e-05 Score=71.25 Aligned_cols=41 Identities=34% Similarity=0.398 Sum_probs=35.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPTGS 45 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~ 45 (426)
.+.||+|||||.+|++.|..|+++ |++|+|+||+......+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqss 129 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSS 129 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccc
Confidence 357999999999999999999864 79999999998876533
No 186
>PRK14727 putative mercuric reductase; Provisional
Probab=98.49 E-value=6.2e-07 Score=88.97 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=34.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.++||+||||||+|+++|..|++.|.+|+|+|+...++
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~G 52 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIG 52 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcce
Confidence 46899999999999999999999999999999986553
No 187
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.49 E-value=1.3e-07 Score=93.77 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=37.1
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
|+.+||+|||||+.||++|+.|+++|++|+|+||+..++.
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 3568999999999999999999999999999999998875
No 188
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.45 E-value=1.9e-06 Score=62.80 Aligned_cols=35 Identities=31% Similarity=0.557 Sum_probs=32.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999999853
No 189
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.45 E-value=3.7e-06 Score=85.19 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=35.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
.++||+|||+|++|+++|+.++++|.+|+|+||....+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg 53 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 357999999999999999999999999999999887654
No 190
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.44 E-value=5.5e-07 Score=95.34 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=33.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 579999999999999999999999999999998765
No 191
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.41 E-value=2.5e-06 Score=84.48 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=31.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
+|||+||||||+|+.+|+.+++.|.+|.|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999985
No 192
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.41 E-value=3.3e-06 Score=75.35 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=87.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcC------------------C
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG------------------R 68 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~------------------~ 68 (426)
..|+|||+|.|||+++..+-..|-.|+++|+....+..+ ..+.-+|+....+.-+.+.+. .
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS-iKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~ 88 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS-IKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV 88 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc-eecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence 369999999999999999988876799999999987543 112222332222222222110 0
Q ss_pred chhhhccCcceeecccccc-------------cccccccccc-ccCCCcchhccHHHHHHHHHhcC---CCCe-eEeeee
Q 014324 69 PHLLHLATVPLTIDQNQAT-------------DNAKVTRTLA-RDDNFNFRAAHWADLHGLLYNAL---PPEI-FLRGHQ 130 (426)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~---~~~~-i~~~~~ 130 (426)
++.+............|.. .|..+.++-. ....+++..|- ..|...|.+.. ++-+ |..+++
T Consensus 89 ~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~-~~L~~~l~k~as~~pe~~ki~~nsk 167 (477)
T KOG2404|consen 89 PELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIV-KALSTRLKKKASENPELVKILLNSK 167 (477)
T ss_pred HHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHH-HHHHHHHHHhhhcChHHHhhhhcce
Confidence 1111111110000000000 0101111100 01112222221 22333343332 2345 889999
Q ss_pred EEEEEEecCCceEE-EEEEeccCCceEEEeecEEEeccCCchhhhhhhc
Q 014324 131 YLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFL 178 (426)
Q Consensus 131 v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~ 178 (426)
|+++.. ++..|. |.+. ..+|+...+.++-||-|+|.++---+.++
T Consensus 168 vv~il~--n~gkVsgVeym-d~sgek~~~~~~~VVlatGGf~ysd~~lL 213 (477)
T KOG2404|consen 168 VVDILR--NNGKVSGVEYM-DASGEKSKIIGDAVVLATGGFGYSDKELL 213 (477)
T ss_pred eeeeec--CCCeEEEEEEE-cCCCCccceecCceEEecCCcCcChHHHH
Confidence 999994 334444 4444 56788778999999999999986545554
No 193
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.41 E-value=1.4e-06 Score=83.45 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=32.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 48999999999999999999999999999988764
No 194
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=3.6e-07 Score=89.69 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=37.9
Q ss_pred CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
++.+.+|||||||+|||+||..|...|++|+|+|.+..++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 34567999999999999999999999999999999999875
No 195
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.39 E-value=5.2e-07 Score=89.73 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=31.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 196
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.38 E-value=3.4e-06 Score=81.79 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=35.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..|||+||||||+|..+|..+++.|.+|.++|+....+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lG 40 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLG 40 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcC
Confidence 56999999999999999999999999999999997543
No 197
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=3.7e-06 Score=83.05 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=31.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|+||||||+|+++|..|++.|.+|+|+||.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 799999999999999999999999999998753
No 198
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.35 E-value=1.7e-06 Score=90.74 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=33.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
..+|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 468999999999999999999999999999998875
No 199
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.35 E-value=4.9e-06 Score=82.31 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=30.8
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
||+||||||+|+.+|..++++|.+|+|+|+..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999875
No 200
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.35 E-value=9.3e-06 Score=74.29 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=44.5
Q ss_pred CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR 174 (426)
Q Consensus 122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR 174 (426)
+|+ +..+++|...+.+.++ .|.+++++-+++++++++||.+..|.|.+.-+.
T Consensus 265 QgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred cCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 577 9999999999976665 888888888899999999999999999875443
No 201
>PRK07208 hypothetical protein; Provisional
Probab=98.34 E-value=5.6e-07 Score=89.54 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=36.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+..||+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 457999999999999999999999999999999998765
No 202
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.31 E-value=5.7e-06 Score=80.14 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=33.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~ 42 (426)
...+|+|||||+||+.+|..|+++|. +|+|+++.+...
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 44689999999999999999999986 799999887643
No 203
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.31 E-value=7.2e-06 Score=81.14 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~ 38 (426)
.+|||+||||||+|.++|..+++. |.+|.|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999996 9999999984
No 204
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.31 E-value=1.4e-06 Score=77.43 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=44.8
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCC------CCcceeccChhHHHH
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGS------PTGAGLGLDRPAQRI 60 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~------~~~~~~~l~~~~~~~ 60 (426)
..++|++|||||++|++.|..|.-+ +.+|.|+|+........ ...+|+-..|.++++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKA 110 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKA 110 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccch
Confidence 4679999999999999999999877 89999999998875422 123467777766553
No 205
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.28 E-value=7.1e-06 Score=80.49 Aligned_cols=35 Identities=29% Similarity=0.555 Sum_probs=31.8
Q ss_pred cEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP 42 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~ 42 (426)
+|+|||||++|+.+|..|++. +.+|+|+|+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 799999999999999999887 57999999998754
No 206
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.25 E-value=4.7e-06 Score=82.12 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 41 (426)
+|+|||||++|+++|..|++.+ .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 7999999999999999999875 589999998874
No 207
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=6.9e-06 Score=78.03 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=77.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce-eec
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL-TID 82 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 82 (426)
++|+|||+|++|+.+|..|.+.- -.+.|||++...+ +|+..+...-..+ +.+ ...-.....+. .-+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G------~GiaYs~~~p~~~--lNv--~a~~mS~~~pD~p~~ 71 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG------QGIAYSTEEPEHL--LNV--PAARMSAFAPDIPQD 71 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC------CCccCCCCCchhh--hcc--ccccccccCCCCchH
Confidence 68999999999999999998761 2399999999864 4444443321111 111 00000000010 000
Q ss_pred cccccccc--ccc---ccccccCCCcchhccHHHHHHHHH---hcCCCC-eeEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324 83 QNQATDNA--KVT---RTLARDDNFNFRAAHWADLHGLLY---NALPPE-IFLRGHQYLSFCISEVKTTVTVKAKVLQTD 153 (426)
Q Consensus 83 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~r~~l~~~L~---~~~~~~-~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g 153 (426)
+..|..+. ... ........++.+.+--..+.+.|. +..+.. +.....+.+++...++.....++ ..+|
T Consensus 72 F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~---~~~g 148 (474)
T COG4529 72 FVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT---TADG 148 (474)
T ss_pred HHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe---cCCC
Confidence 11111111 000 000111112222222122222222 222222 45566777777765444455555 6778
Q ss_pred ceEEEeecEEEeccCCchhhhhh
Q 014324 154 EVIEIKGNLLVAADGCLSSIRQS 176 (426)
Q Consensus 154 ~~~~~~~d~vI~AdG~~S~vR~~ 176 (426)
+. ..||.+|.|+|..-+....
T Consensus 149 ~~--~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 149 PS--EIADIIVLATGHSAPPADP 169 (474)
T ss_pred Ce--eeeeEEEEeccCCCCCcch
Confidence 76 6899999999987666555
No 208
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.25 E-value=1.1e-06 Score=86.49 Aligned_cols=36 Identities=39% Similarity=0.609 Sum_probs=33.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|||+||||||+|+++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 569999999999999999999999999999999764
No 209
>PLN02546 glutathione reductase
Probab=98.24 E-value=6.8e-06 Score=82.43 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=30.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (426)
+|||+||||||+|+.+|..++++|.+|.|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 210
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.20 E-value=4.1e-06 Score=79.85 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=45.5
Q ss_pred hcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 118 NALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 118 ~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
.+++.|. +.-..+|.++..++++..+.+++++...|++++|+|+.||-|+|..|- +|+.-
T Consensus 233 TA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Md 294 (680)
T KOG0042|consen 233 TAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMD 294 (680)
T ss_pred HHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence 3445566 556667777776666655678888888999999999999999999986 56553
No 211
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.18 E-value=1e-05 Score=82.42 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=32.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+|||+||||||+|.++|..+++.|.+|+|+|+..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~ 149 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDD 149 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 6899999999999999999999999999999753
No 212
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.17 E-value=2e-06 Score=85.01 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=44.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCC----------CCcce--eccChhHHHHHHHHhc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGS----------PTGAG--LGLDRPAQRIIQSWLN 66 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~----------~~~~~--~~l~~~~~~~l~~~~~ 66 (426)
.+|+|||||+|||++|+.|+++| ++|+|+|+++.++... ..|.. ..-.+...++++++|+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl 74 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGL 74 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCC
Confidence 37999999999999999999988 8999999999886421 12211 1123346678888876
No 213
>PRK07233 hypothetical protein; Provisional
Probab=98.17 E-value=2e-06 Score=84.50 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=44.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C-cc--------eeccChhHHHHHHHHhc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP---T-GA--------GLGLDRPAQRIIQSWLN 66 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~---~-~~--------~~~l~~~~~~~l~~~~~ 66 (426)
+|+|||||++||++|+.|+++|++|+|+|+++.++.... . |. ...-.+...++++++|+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~ 71 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGL 71 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCC
Confidence 699999999999999999999999999999998865220 0 11 01123556778888876
No 214
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.16 E-value=2.1e-06 Score=85.63 Aligned_cols=37 Identities=32% Similarity=0.609 Sum_probs=35.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
.||+|||||++||++|..|+++|++|+|+|++..++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999998864
No 215
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=2.1e-06 Score=82.29 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=35.2
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
++|+|+|||+|||++|..|+.+|++|+|+|+++.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4799999999999999999999999999999999875
No 216
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.15 E-value=2.3e-06 Score=85.30 Aligned_cols=37 Identities=32% Similarity=0.420 Sum_probs=35.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+||+|||||++||++|..|+++|++|+|+||+..++.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5899999999999999999999999999999999864
No 217
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.14 E-value=0.00015 Score=71.13 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 107 AHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 107 ~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
++-..+.+.|...++. |+ |..++.|+++....++ .+.|. +.-|. |++..+|.|.|.+..-
T Consensus 184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVe---T~~G~---iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVE---TPHGS---IETECVVNAAGVWARE 245 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-cccee---ccCcc---eecceEEechhHHHHH
Confidence 4556777778777765 88 9999999999875443 33444 45565 7999999999998643
No 218
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.14 E-value=4.9e-06 Score=82.17 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=46.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCc----ce----eccChhHHHHHHHHhcC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTG----AG----LGLDRPAQRIIQSWLNG 67 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~----~~----~~l~~~~~~~l~~~~~~ 67 (426)
+|+|||||++||++|+.|+++|++|+|+|+++.++... ..| .| ....|+.+++++++|+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 73 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE 73 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc
Confidence 59999999999999999999999999999998765421 011 11 22357889999999873
No 219
>PLN02568 polyamine oxidase
Probab=98.13 E-value=3e-06 Score=84.62 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=37.3
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcC-----CcEEEEcccCCCCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAG-----WDVVVLEKAGGPPT 43 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G-----~~v~v~E~~~~~~~ 43 (426)
||. +..||+|||||++||++|..|++.| ++|+|+|++..++.
T Consensus 1 ~~~-~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 1 MVA-KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCC-CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 554 4589999999999999999999988 89999999998864
No 220
>PLN02576 protoporphyrinogen oxidase
Probab=98.13 E-value=2.8e-06 Score=84.97 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=36.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~ 43 (426)
.++||+|||||++||++|+.|+++ |++|+|+|+++.++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 457999999999999999999999 999999999998864
No 221
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.11 E-value=3.3e-06 Score=80.08 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=34.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+||+|||||++|+++|..|++.|.+|+|+|++..++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 6999999999999999999999999999999877653
No 222
>PLN02268 probable polyamine oxidase
Probab=98.11 E-value=3e-06 Score=83.26 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=34.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
.+|+|||||+|||++|+.|.++|++|+|+|+++..+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 3799999999999999999999999999999998875
No 223
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=2.9e-06 Score=83.94 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (426)
|..|||+||||||+|+++|..|++.|.+|+|+|+
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 3559999999999999999999999999999999
No 224
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.09 E-value=3.5e-06 Score=83.48 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=45.6
Q ss_pred CccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCCCC----CCccee--------ccChhHHHHHHHHhc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPTGS----PTGAGL--------GLDRPAQRIIQSWLN 66 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~----~~~~~~--------~l~~~~~~~l~~~~~ 66 (426)
+.||+|||||+|||++|+.|+++ |++|+|+|+++.++... ..|..+ .-.+...++++++|+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl 78 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGL 78 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCC
Confidence 36899999999999999999999 99999999999876421 011111 122447778888876
No 225
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.09 E-value=2.1e-05 Score=75.63 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=68.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . . +.+.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----~-~-~~~~------------------------------ 184 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----S-L-MPPE------------------------------ 184 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----h-h-CCHH------------------------------
Confidence 5799999999999999999999999999998775321 0 0 0000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
. ...+++.|. +.|+ +++++++.++..+ ...+.++ +.+|++ +.+|+||.
T Consensus 185 ---------~------------~~~l~~~l~---~~gV~i~~~~~v~~i~~~--~~~~~v~---~~~g~~--i~~D~vI~ 233 (377)
T PRK04965 185 ---------V------------SSRLQHRLT---EMGVHLLLKSQLQGLEKT--DSGIRAT---LDSGRS--IEVDAVIA 233 (377)
T ss_pred ---------H------------HHHHHHHHH---hCCCEEEECCeEEEEEcc--CCEEEEE---EcCCcE--EECCEEEE
Confidence 0 012223332 2377 8889999998743 3345555 567765 89999999
Q ss_pred ccCCchh
Q 014324 166 ADGCLSS 172 (426)
Q Consensus 166 AdG~~S~ 172 (426)
|+|..+.
T Consensus 234 a~G~~p~ 240 (377)
T PRK04965 234 AAGLRPN 240 (377)
T ss_pred CcCCCcc
Confidence 9998654
No 226
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.09 E-value=4.1e-06 Score=88.29 Aligned_cols=37 Identities=38% Similarity=0.519 Sum_probs=34.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.++|+|||||||||++|+.|++.|++|+|||+.+.++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 4799999999999999999999999999999998754
No 227
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.06 E-value=3.5e-06 Score=84.33 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=33.5
Q ss_pred EEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
|+|||||++||++|..|+++|++|+|+|++..++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcC
Confidence 68999999999999999999999999999999875
No 228
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=5.1e-05 Score=75.12 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=71.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. + +.+..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------~--~d~~~---------------------------- 217 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------G--TDTET---------------------------- 217 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------C--CCHHH----------------------------
Confidence 35899999999999999999999999999998765321 0 00000
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+..+.+.|. +.|+ ++.++++.+++.++ ..+.+++....+|+..++++|.||
T Consensus 218 -----------------------~~~l~~~l~---~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi 269 (466)
T PRK06115 218 -----------------------AKTLQKALT---KQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVL 269 (466)
T ss_pred -----------------------HHHHHHHHH---hcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEE
Confidence 011222232 2477 99999999997532 345444332234554569999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|..+.+.
T Consensus 270 ~a~G~~pn~~ 279 (466)
T PRK06115 270 VAIGRRPYTQ 279 (466)
T ss_pred EccCCccccc
Confidence 9999886654
No 229
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=4.9e-05 Score=75.41 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=69.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . ..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-----~---~~-------------------------------- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-----T---ED-------------------------------- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-----c---CC--------------------------------
Confidence 5899999999999999999999999999998876321 0 00
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.+.+.++ .|+ ++.++++..++...++....+. ..+|+..++.+|.||
T Consensus 221 -----------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~---~~~g~~~~i~~D~vi 274 (472)
T PRK05976 221 -----------------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVA---EHNGEEKTLEADKVL 274 (472)
T ss_pred -----------------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEE---EeCCceEEEEeCEEE
Confidence 011111222222 477 9999999998742122222222 356765569999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|....+.
T Consensus 275 ~a~G~~p~~~ 284 (472)
T PRK05976 275 VSVGRRPNTE 284 (472)
T ss_pred EeeCCccCCC
Confidence 9999987654
No 230
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=5.6e-06 Score=74.24 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=40.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHH
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW 64 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 64 (426)
++||+|||||+||++||+.|+++|.+++|+-+.... +..+..++++|.++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsA---------LhfsSGslDlL~~l 51 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSA---------LHFSSGSLDLLGRL 51 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChhh---------hhcccccHHHhhcC
Confidence 589999999999999999999999999999887653 33444555566554
No 231
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.04 E-value=4.1e-05 Score=75.86 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=71.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+.. . +.+. +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~---~~~~---------------~------------- 213 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-----G---EDAE---------------V------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-----C---CCHH---------------H-------------
Confidence 35899999999999999999999999999998865311 0 0000 0
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
...+.+.|. +.|+ ++.++++.+++.++ ..+.+. ..+|+..++.+|.||
T Consensus 214 -----------------------~~~~~~~l~---~~gi~i~~~~~v~~i~~~~--~~v~v~---~~~g~~~~i~~D~vi 262 (461)
T TIGR01350 214 -----------------------SKVVAKALK---KKGVKILTNTKVTAVEKND--DQVVYE---NKGGETETLTGEKVL 262 (461)
T ss_pred -----------------------HHHHHHHHH---HcCCEEEeCCEEEEEEEeC--CEEEEE---EeCCcEEEEEeCEEE
Confidence 011222232 2477 99999999987543 345544 345644458999999
Q ss_pred eccCCchhhhh
Q 014324 165 AADGCLSSIRQ 175 (426)
Q Consensus 165 ~AdG~~S~vR~ 175 (426)
.|.|..+.+..
T Consensus 263 ~a~G~~p~~~~ 273 (461)
T TIGR01350 263 VAVGRKPNTEG 273 (461)
T ss_pred EecCCcccCCC
Confidence 99999887653
No 232
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=7.9e-06 Score=73.15 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=35.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+|++|||||.+|+.+|..|++.|.+|.|+||++.++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 7999999999999999999999999999999999875
No 233
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.00 E-value=8.5e-06 Score=78.86 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCccEEEEcCChHHHHHHHHH-HHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHAL-LRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L-~~~G~~v~v~E~~~~~~~ 43 (426)
...+|+||||||||+.+|..| ++.|++|+||||.+.+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 456899999999999999965 567999999999999864
No 234
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.00 E-value=6.5e-06 Score=80.00 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=36.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+.+||+|||+|++|+++|..|++.|.+|+++|++...+.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 579999999999999999999999999999999998765
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=98.00 E-value=7.7e-06 Score=80.62 Aligned_cols=38 Identities=32% Similarity=0.644 Sum_probs=34.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...||+|||||||||++|..|++.|++|+|||+.+.++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G 176 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG 176 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 45799999999999999999999999999999987653
No 236
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.00 E-value=7.4e-06 Score=80.35 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHH--cCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLR--AGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~ 43 (426)
...+|+||||||||+.+|..|++ .|++|+|||+.+.+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 35689999999999999999987 7999999999998753
No 237
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.99 E-value=8.7e-06 Score=76.74 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=38.0
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG 44 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~ 44 (426)
+...||||||||.+||++|..|.+.|++|+|+|.+...+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 56789999999999999999999999999999999998753
No 238
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.98 E-value=5.4e-05 Score=73.32 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=68.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. .. ..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~~-------------------------------- 185 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-----RN--AP-------------------------------- 185 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh-----hh--cC--------------------------------
Confidence 5799999999999999999999999999998775321 00 00
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.+.+.+ +.|+ +++++++.+++. +..+.++ +.+|+. +.+|+||
T Consensus 186 -----------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~~~v~---l~~g~~--i~aD~Vv 234 (396)
T PRK09754 186 -----------------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD---GEKVELT---LQSGET--LQADVVI 234 (396)
T ss_pred -----------------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCEEEEE---ECCCCE--EECCEEE
Confidence 01111122222 2477 889999998874 2344454 567765 8999999
Q ss_pred eccCCchhh
Q 014324 165 AADGCLSSI 173 (426)
Q Consensus 165 ~AdG~~S~v 173 (426)
.|.|.....
T Consensus 235 ~a~G~~pn~ 243 (396)
T PRK09754 235 YGIGISAND 243 (396)
T ss_pred ECCCCChhh
Confidence 999987654
No 239
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.98 E-value=2.8e-05 Score=76.54 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=28.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
++|||+|||+||+|..+|.. +.|.+|.++|+..
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~ 33 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT 33 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 36999999999999988654 4699999999854
No 240
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.98 E-value=4.8e-05 Score=74.32 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+.+.+|+|||||.||+.+|..|.+.+.+|+|||+++..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 45679999999999999999998778999999988763
No 241
>PLN02676 polyamine oxidase
Probab=97.97 E-value=9.2e-06 Score=80.47 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=36.2
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPT 43 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~ 43 (426)
...+||+|||||++||++|+.|+++|+ +|+|+|++..++.
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 346899999999999999999999998 6999999998764
No 242
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=6.7e-05 Score=74.13 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=68.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. .. .+.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------~~--d~e------------------------------ 212 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------GE--DED------------------------------ 212 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------cc--cHH------------------------------
Confidence 5799999999999999999999999999998765311 00 000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
. +..+.+.|. +.|+ ++.++++..++.+ +..+.+. .+|+..++++|+||.
T Consensus 213 ---------~------------~~~l~~~L~---~~GI~i~~~~~V~~i~~~--~~~v~~~----~~g~~~~i~~D~viv 262 (458)
T PRK06912 213 ---------I------------AHILREKLE---NDGVKIFTGAALKGLNSY--KKQALFE----YEGSIQEVNAEFVLV 262 (458)
T ss_pred ---------H------------HHHHHHHHH---HCCCEEEECCEEEEEEEc--CCEEEEE----ECCceEEEEeCEEEE
Confidence 0 012222332 2477 9999999998743 2344432 245444689999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|..+.+.
T Consensus 263 A~G~~p~~~ 271 (458)
T PRK06912 263 SVGRKPRVQ 271 (458)
T ss_pred ecCCccCCC
Confidence 999887764
No 243
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.97 E-value=7.4e-06 Score=81.08 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=31.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
|||+||||||+|+++|..|+++|++|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999875
No 244
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.96 E-value=8.4e-06 Score=78.37 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=45.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCC----------CCc-ceeccC-hhHHHHHHHHhc
Q 014324 8 KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGS----------PTG-AGLGLD-RPAQRIIQSWLN 66 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~----------~~~-~~~~l~-~~~~~~l~~~~~ 66 (426)
.|+|||||++||++|+.|++++ ++|+|||+.+..+... ..| ..+... +..+++++++|+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGl 74 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGL 74 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCc
Confidence 6999999999999999999999 9999999998876411 011 122233 567778888887
No 245
>PRK07846 mycothione reductase; Reviewed
Probab=97.95 E-value=5.7e-05 Score=74.36 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=27.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+|||+||||||+|.++|.. +.|.+|.|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999854
No 246
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=8.9e-05 Score=73.45 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=70.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . . .+..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-----~-~--d~~~----------------------------- 215 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-----N-E--DAEV----------------------------- 215 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-----c-c--CHHH-----------------------------
Confidence 5899999999999999999999999999998765321 0 0 0000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.|. +.|+ ++.++++.+++.+ +..+.+++. ..+|+..++++|.||.
T Consensus 216 ----------------------~~~l~~~l~---~~gV~i~~~~~v~~i~~~--~~~~~v~~~-~~~g~~~~i~~D~vi~ 267 (466)
T PRK07818 216 ----------------------SKEIAKQYK---KLGVKILTGTKVESIDDN--GSKVTVTVS-KKDGKAQELEADKVLQ 267 (466)
T ss_pred ----------------------HHHHHHHHH---HCCCEEEECCEEEEEEEe--CCeEEEEEE-ecCCCeEEEEeCEEEE
Confidence 011222232 2478 9999999999743 334444432 1466655699999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|....+.
T Consensus 268 a~G~~pn~~ 276 (466)
T PRK07818 268 AIGFAPRVE 276 (466)
T ss_pred CcCcccCCC
Confidence 999887664
No 247
>PLN02487 zeta-carotene desaturase
Probab=97.94 E-value=1.9e-05 Score=79.19 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=47.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCcc----e----eccChhHHHHHHHHhcC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTGA----G----LGLDRPAQRIIQSWLNG 67 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~~----~----~~l~~~~~~~l~~~~~~ 67 (426)
++|+|||||++||++|+.|+++|++|+|+|+.+.++... ..|. | +...++..++++++|+.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~ 149 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGAD 149 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCc
Confidence 599999999999999999999999999999999876311 0111 1 12346788999999883
No 248
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.94 E-value=1.7e-05 Score=85.01 Aligned_cols=37 Identities=35% Similarity=0.425 Sum_probs=34.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+|+|||||||||++|..|+++|++|+|||+.+.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 4699999999999999999999999999999988764
No 249
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.92 E-value=8.1e-05 Score=73.71 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=70.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. . +.+..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d~~~---------------------------- 218 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------F--LDDEI---------------------------- 218 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------c--CCHHH----------------------------
Confidence 35899999999999999999999999999998875321 0 00000
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+..+.+.|. +.|+ ++.++++++++.+++ .+.++ +.+|++ +++|.||
T Consensus 219 -----------------------~~~l~~~l~---~~gI~v~~~~~v~~i~~~~~--~~~v~---~~~g~~--i~~D~vi 265 (461)
T PRK05249 219 -----------------------SDALSYHLR---DSGVTIRHNEEVEKVEGGDD--GVIVH---LKSGKK--IKADCLL 265 (461)
T ss_pred -----------------------HHHHHHHHH---HcCCEEEECCEEEEEEEeCC--eEEEE---ECCCCE--EEeCEEE
Confidence 011222232 2477 899999999885433 45554 456664 8999999
Q ss_pred eccCCchhhhh
Q 014324 165 AADGCLSSIRQ 175 (426)
Q Consensus 165 ~AdG~~S~vR~ 175 (426)
.|.|..+.+..
T Consensus 266 ~a~G~~p~~~~ 276 (461)
T PRK05249 266 YANGRTGNTDG 276 (461)
T ss_pred EeecCCccccC
Confidence 99999877653
No 250
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.92 E-value=1.2e-05 Score=75.85 Aligned_cols=37 Identities=30% Similarity=0.523 Sum_probs=35.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
.+|+|||||+||+++|+.|++.|++|.++||.+.++.
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 5799999999999999999999999999999999864
No 251
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.92 E-value=1.4e-05 Score=78.57 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..++|+||||||+||++|..|++.|++|+|||+.+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G 169 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG 169 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999999999999987653
No 252
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.91 E-value=1.1e-05 Score=83.71 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
...+|+|||||||||++|+.|++.|++|+|||+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 44699999999999999999999999999999864
No 253
>PRK07846 mycothione reductase; Reviewed
Probab=97.90 E-value=0.00011 Score=72.31 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=68.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. . +.+. +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------~--~d~~---------------~------------- 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------H--LDDD---------------I------------- 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------c--cCHH---------------H-------------
Confidence 35899999999999999999999999999998765310 0 0000 0
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+..+.+ ..+.++ ++.++++.+++.++ ..+.++ +.+|+. +++|.||
T Consensus 210 -----------------------~~~l~~----l~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g~~--i~~D~vl 255 (451)
T PRK07846 210 -----------------------SERFTE----LASKRWDVRLGRNVVGVSQDG--SGVTLR---LDDGST--VEADVLL 255 (451)
T ss_pred -----------------------HHHHHH----HHhcCeEEEeCCEEEEEEEcC--CEEEEE---ECCCcE--eecCEEE
Confidence 011222 223467 88899999987432 345555 456654 8999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|....+.
T Consensus 256 ~a~G~~pn~~ 265 (451)
T PRK07846 256 VATGRVPNGD 265 (451)
T ss_pred EEECCccCcc
Confidence 9999887653
No 254
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.89 E-value=0.00013 Score=70.93 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=74.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
+..++|||||+.|+-+|..+++.|.+|+|+|+.+.+.+. ..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~--------~D------------------------------- 213 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG--------ED------------------------------- 213 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc--------CC-------------------------------
Confidence 347999999999999999999999999999999986420 00
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL 163 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 163 (426)
.++.+.+.+.++ .++ ++.++++..++..+++ +.++ +++|+..++++|.|
T Consensus 214 ------------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~---~~~g~~~~~~ad~v 264 (454)
T COG1249 214 ------------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVT---LEDGEGGTIEADAV 264 (454)
T ss_pred ------------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEE---EecCCCCEEEeeEE
Confidence 112222333333 366 8899999998854433 6666 45555435899999
Q ss_pred EeccCCchhhhhh
Q 014324 164 VAADGCLSSIRQS 176 (426)
Q Consensus 164 I~AdG~~S~vR~~ 176 (426)
+.|.|....+-..
T Consensus 265 LvAiGR~Pn~~~L 277 (454)
T COG1249 265 LVAIGRKPNTDGL 277 (454)
T ss_pred EEccCCccCCCCC
Confidence 9999998777654
No 255
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.3e-05 Score=69.83 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEE
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVL 35 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~ 35 (426)
...|||+||||||||.++|++.+|.|++.=|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 45799999999999999999999999886444
No 256
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.89 E-value=1.4e-05 Score=82.30 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=34.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+|||||||||++|..|++.|++|+|||+.+.++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34699999999999999999999999999999988764
No 257
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=2.1e-05 Score=75.54 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=77.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhH----HHHHHHHhcCCchhhhccCccee
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPA----QRIIQSWLNGRPHLLHLATVPLT 80 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~----~~~l~~~~~~~~~~~~~~~~~~~ 80 (426)
..|||||||||-||.-||++.+|.|.++.++=-+.+--. ..+|.=.+..-+ ++-++.||........+.+..+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig--~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG--EMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee--ecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence 459999999999999999999999999999977665311 111211111111 11122232211111112221111
Q ss_pred eccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324 81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~ 158 (426)
+...+.|.-+.... ..++|....+.+++.++ ++.-.+...|.++..+++...+.|. +.+|.. +
T Consensus 81 --~LN~sKGPAVra~R--------aQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~---t~~G~~--~ 145 (621)
T COG0445 81 --MLNSSKGPAVRAPR--------AQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV---TADGPE--F 145 (621)
T ss_pred --hccCCCcchhcchh--------hhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE---eCCCCe--e
Confidence 00111111000000 01334444555555554 3444456667777654433233343 678887 8
Q ss_pred eecEEEeccCCc
Q 014324 159 KGNLLVAADGCL 170 (426)
Q Consensus 159 ~~d~vI~AdG~~ 170 (426)
.|+.||.++|.+
T Consensus 146 ~a~aVVlTTGTF 157 (621)
T COG0445 146 HAKAVVLTTGTF 157 (621)
T ss_pred ecCEEEEeeccc
Confidence 999999999976
No 258
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.88 E-value=1.8e-05 Score=78.41 Aligned_cols=38 Identities=37% Similarity=0.501 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..++|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 34799999999999999999999999999999998764
No 259
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.87 E-value=2.4e-05 Score=70.84 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=47.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC------Cccee-----------ccChhHHHHHHHHhcC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP------TGAGL-----------GLDRPAQRIIQSWLNG 67 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~------~~~~~-----------~l~~~~~~~l~~~~~~ 67 (426)
.+.+|+|||+|++||++|+.|+++ .+|++||.....+.+.. .+.|+ .-.|+-.++++.+|+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 457999999999999999999987 79999999998876442 11121 1346777888888874
No 260
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.86 E-value=5.4e-05 Score=72.52 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=29.5
Q ss_pred cEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~ 41 (426)
+|+|||||+||+.+|..|.++ +.+|+|+|++...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 589999999999999999644 6899999988763
No 261
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.85 E-value=6.2e-05 Score=79.22 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=31.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPP 42 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~ 42 (426)
.+|+|||+|+||+.+|..|.++ +++|+||++.+.+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 4899999999999999999764 58999999998864
No 262
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.85 E-value=0.00011 Score=72.85 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=69.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . +.+..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~~~~~----------------------------- 215 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-----G---EDKEI----------------------------- 215 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-----c---CCHHH-----------------------------
Confidence 5799999999999999999999999999999876321 0 00000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
...+++.|. +.|+ ++.++++.+++.+++ .+.++.. .+|+..++.+|.||.
T Consensus 216 ----------------------~~~l~~~l~---~~gV~i~~~~~V~~i~~~~~--~v~v~~~--~gg~~~~i~~D~vi~ 266 (462)
T PRK06416 216 ----------------------SKLAERALK---KRGIKIKTGAKAKKVEQTDD--GVTVTLE--DGGKEETLEADYVLV 266 (462)
T ss_pred ----------------------HHHHHHHHH---HcCCEEEeCCEEEEEEEeCC--EEEEEEE--eCCeeEEEEeCEEEE
Confidence 012222232 2477 999999999985433 4555421 224444689999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|....+.
T Consensus 267 a~G~~p~~~ 275 (462)
T PRK06416 267 AVGRRPNTE 275 (462)
T ss_pred eeCCccCCC
Confidence 999886654
No 263
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=0.00014 Score=72.14 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=70.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+.. . ..+..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~d~~~----------------------------- 226 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-----A---ADEQV----------------------------- 226 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-----c---CCHHH-----------------------------
Confidence 5899999999999999999999999999998775321 0 00000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.|. ..|+ ++.++++..++.++ ..+.+++. ..+|+..++++|.||.
T Consensus 227 ----------------------~~~~~~~l~---~~gi~i~~~~~v~~i~~~~--~~v~v~~~-~~~g~~~~i~~D~vl~ 278 (475)
T PRK06327 227 ----------------------AKEAAKAFT---KQGLDIHLGVKIGEIKTGG--KGVSVAYT-DADGEAQTLEVDKLIV 278 (475)
T ss_pred ----------------------HHHHHHHHH---HcCcEEEeCcEEEEEEEcC--CEEEEEEE-eCCCceeEEEcCEEEE
Confidence 011222232 2477 99999999997533 34555432 2235545699999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|..+.+.
T Consensus 279 a~G~~p~~~ 287 (475)
T PRK06327 279 SIGRVPNTD 287 (475)
T ss_pred ccCCccCCC
Confidence 999887654
No 264
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.85 E-value=1.7e-05 Score=78.40 Aligned_cols=59 Identities=27% Similarity=0.277 Sum_probs=45.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCcc--------eeccChhHHHHHHHHhc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTGA--------GLGLDRPAQRIIQSWLN 66 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~~--------~~~l~~~~~~~l~~~~~ 66 (426)
+|+|||||++||++|+.|+++|++|+|+|+++.++... ..|. -....++..++++++|.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~ 72 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGA 72 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCC
Confidence 58999999999999999999999999999999876311 1111 11234567788888876
No 265
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.84 E-value=0.00016 Score=71.58 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=68.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||+|++|+-+|..|++.|.+|+|+|+.+.+.. . ..+..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~d~~~----------------------------- 209 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----R---EEPEI----------------------------- 209 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----c---cCHHH-----------------------------
Confidence 5899999999999999999999999999998865321 0 00000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+++.|. ..++ ++.++++..++.++ ..+.+++. .++...++++|.||.
T Consensus 210 ----------------------~~~l~~~l~---~~gV~i~~~~~V~~i~~~~--~~~~v~~~--~~~~~~~i~~D~Vii 260 (463)
T TIGR02053 210 ----------------------SAAVEEALA---EEGIEVVTSAQVKAVSVRG--GGKIITVE--KPGGQGEVEADELLV 260 (463)
T ss_pred ----------------------HHHHHHHHH---HcCCEEEcCcEEEEEEEcC--CEEEEEEE--eCCCceEEEeCEEEE
Confidence 011222232 2477 89999999987532 23444422 122234589999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|..+.+.
T Consensus 261 A~G~~p~~~ 269 (463)
T TIGR02053 261 ATGRRPNTD 269 (463)
T ss_pred eECCCcCCC
Confidence 999876654
No 266
>PLN02529 lysine-specific histone demethylase 1
Probab=97.83 E-value=2.1e-05 Score=80.71 Aligned_cols=39 Identities=41% Similarity=0.697 Sum_probs=35.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
...+|+|||||++||++|..|+++|++|+|+|++..++.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 457999999999999999999999999999999987653
No 267
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.83 E-value=1.5e-05 Score=73.97 Aligned_cols=36 Identities=36% Similarity=0.407 Sum_probs=31.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPP 42 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~ 42 (426)
|||||||+|++|+++|..|++.| .+|+|+|+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 79999999999999999999997 7999999998754
No 268
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.82 E-value=2.7e-05 Score=76.91 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=35.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~ 43 (426)
++.+|+|||||+|||++|..|++. |.+|+|+|+.+.++.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG 63 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG 63 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence 357999999999999999999995 689999999998875
No 269
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.82 E-value=2.3e-05 Score=82.18 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+|||||||||++|..|+++|++|+|||+.+.++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35699999999999999999999999999999977654
No 270
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00022 Score=70.67 Aligned_cols=102 Identities=14% Similarity=0.145 Sum_probs=68.2
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . +.+...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------~--~d~~~~---------------------------- 218 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------A--ADKDIV---------------------------- 218 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------c--CCHHHH----------------------------
Confidence 5899999999999999999999999999998876421 0 110000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
..+++.|.+ . + ++.++++..++..++ .+.+++. ..+|+..++++|.||.
T Consensus 219 -----------------------~~~~~~l~~---~-v~i~~~~~v~~i~~~~~--~~~v~~~-~~~~~~~~i~~D~vi~ 268 (471)
T PRK06467 219 -----------------------KVFTKRIKK---Q-FNIMLETKVTAVEAKED--GIYVTME-GKKAPAEPQRYDAVLV 268 (471)
T ss_pred -----------------------HHHHHHHhh---c-eEEEcCCEEEEEEEcCC--EEEEEEE-eCCCcceEEEeCEEEE
Confidence 112222221 2 5 788889988875433 4554432 1223334589999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|....+.
T Consensus 269 a~G~~pn~~ 277 (471)
T PRK06467 269 AVGRVPNGK 277 (471)
T ss_pred eecccccCC
Confidence 999987765
No 271
>PRK06370 mercuric reductase; Validated
Probab=97.81 E-value=0.00021 Score=70.71 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=68.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. .. .+..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------~~--~~~~----------------------------- 214 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------RE--DEDV----------------------------- 214 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------cc--CHHH-----------------------------
Confidence 5899999999999999999999999999998776321 00 0000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.|. +.|+ ++.++++.+++..++ .+.+++. ..++ ..++.+|.||.
T Consensus 215 ----------------------~~~l~~~l~---~~GV~i~~~~~V~~i~~~~~--~~~v~~~-~~~~-~~~i~~D~Vi~ 265 (463)
T PRK06370 215 ----------------------AAAVREILE---REGIDVRLNAECIRVERDGD--GIAVGLD-CNGG-APEITGSHILV 265 (463)
T ss_pred ----------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEcCC--EEEEEEE-eCCC-ceEEEeCEEEE
Confidence 011222232 2477 999999999985433 3333322 1222 23589999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|......
T Consensus 266 A~G~~pn~~ 274 (463)
T PRK06370 266 AVGRVPNTD 274 (463)
T ss_pred CcCCCcCCC
Confidence 999876654
No 272
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.81 E-value=2.6e-05 Score=80.48 Aligned_cols=39 Identities=41% Similarity=0.658 Sum_probs=35.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
...+|+|||||++||++|+.|++.|++|+|+|++..++.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 457999999999999999999999999999999988754
No 273
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.80 E-value=2.3e-05 Score=76.10 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=35.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..+|+||||||+||++|..|++.|+.|+|||+.+.++.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 36899999999999999999999999999999999764
No 274
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.80 E-value=0.00021 Score=67.38 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=74.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCCCCCCCc-ceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPPTGSPTG-AGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI 81 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (426)
...+|+|||||-++.-.+..|.+++- +|.++=|+.......... .....+|.-++.+..+.. ..+.....
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~----~~R~~~l~--- 261 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPD----EERRELLR--- 261 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-H----HHHHHHHH---
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCH----HHHHHHHH---
Confidence 45789999999999999999999875 799998887654311000 012345544444433221 11000000
Q ss_pred ccccccccccccccccccCCCcchhccHHH---HHHHHHh-cC--CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324 82 DQNQATDNAKVTRTLARDDNFNFRAAHWAD---LHGLLYN-AL--PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE 154 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---l~~~L~~-~~--~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~ 154 (426)
......+..++... |.+.|++ .+ +..+ ++.+++|++++..++ ..+.+++++...++
T Consensus 262 ----------------~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~~~ 324 (341)
T PF13434_consen 262 ----------------EQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQTGE 324 (341)
T ss_dssp ----------------HTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--
T ss_pred ----------------HhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCCCC
Confidence 00001111222222 2222332 22 2235 889999999998653 37888888778888
Q ss_pred eEEEeecEEEeccCC
Q 014324 155 VIEIKGNLLVAADGC 169 (426)
Q Consensus 155 ~~~~~~d~vI~AdG~ 169 (426)
..++++|+||.|||-
T Consensus 325 ~~~~~~D~VilATGy 339 (341)
T PF13434_consen 325 EETLEVDAVILATGY 339 (341)
T ss_dssp EEEEEESEEEE---E
T ss_pred eEEEecCEEEEcCCc
Confidence 888999999999995
No 275
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.78 E-value=0.00027 Score=70.01 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=69.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . +.+. +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d~~---------------~------------- 212 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------L--EDPE---------------V------------- 212 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------c--hhHH---------------H-------------
Confidence 35899999999999999999999999999998775321 0 0000 0
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+..+++.|.+ . + ++.++++.+++.+++ ..++++ ..+++..++++|.||
T Consensus 213 -----------------------~~~~~~~l~~---~-I~i~~~~~v~~i~~~~~-~~v~~~---~~~~~~~~i~~D~vi 261 (460)
T PRK06292 213 -----------------------SKQAQKILSK---E-FKIKLGAKVTSVEKSGD-EKVEEL---EKGGKTETIEADYVL 261 (460)
T ss_pred -----------------------HHHHHHHHhh---c-cEEEcCCEEEEEEEcCC-ceEEEE---EcCCceEEEEeCEEE
Confidence 0112222321 3 6 888999999875332 345443 345555569999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|....+.
T Consensus 262 ~a~G~~p~~~ 271 (460)
T PRK06292 262 VATGRRPNTD 271 (460)
T ss_pred EccCCccCCC
Confidence 9999876655
No 276
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=0.00017 Score=70.90 Aligned_cols=99 Identities=21% Similarity=0.171 Sum_probs=67.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.. . . .+. +
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~-~--~~~---------------~------------- 200 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-----R-E--EPS---------------V------------- 200 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-----C-C--CHH---------------H-------------
Confidence 35799999999999999999999999999999876421 0 0 000 0
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+..+++.|. +.|+ ++.++++.+++.+ +..+.++ .+|+ ++.+|.||
T Consensus 201 -----------------------~~~~~~~l~---~~GI~i~~~~~V~~i~~~--~~~v~v~----~~g~--~i~~D~vi 246 (438)
T PRK07251 201 -----------------------AALAKQYME---EDGITFLLNAHTTEVKND--GDQVLVV----TEDE--TYRFDALL 246 (438)
T ss_pred -----------------------HHHHHHHHH---HcCCEEEcCCEEEEEEec--CCEEEEE----ECCe--EEEcCEEE
Confidence 011222232 2477 8899999998742 3345443 2444 38999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|....+.
T Consensus 247 va~G~~p~~~ 256 (438)
T PRK07251 247 YATGRKPNTE 256 (438)
T ss_pred EeeCCCCCcc
Confidence 9999886643
No 277
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.78 E-value=2.5e-05 Score=83.95 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=34.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.+||+|||||||||++|+.|++.|++|+|+|+.+.++
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G 199 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG 199 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999998754
No 278
>PRK02106 choline dehydrogenase; Validated
Probab=97.78 E-value=2.8e-05 Score=78.76 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=35.1
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHH-cCCcEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 40 (426)
||. ..+||||||||++|+.+|..|++ .|++|+|+|+.+.
T Consensus 1 ~~~-~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 1 MTT-MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCC-CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 444 56999999999999999999999 7999999999964
No 279
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.78 E-value=0.00014 Score=70.05 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=30.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 41 (426)
.+|+|||||+||+.+|..|.+.+ .+|+|+++.+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 48999999999999999998864 689999998864
No 280
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.77 E-value=6e-05 Score=63.41 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=34.7
Q ss_pred CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGS 45 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~ 45 (426)
..||+|||||-+||++|+..+++ ..+|.|+|..-.|+.+.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 35999999999999999999866 57999999999987543
No 281
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.76 E-value=3.5e-05 Score=76.07 Aligned_cols=38 Identities=32% Similarity=0.572 Sum_probs=34.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g 176 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 34799999999999999999999999999999998753
No 282
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.76 E-value=3.7e-05 Score=79.08 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+||||||+||++|..|++.|++|+|||+.+.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 34699999999999999999999999999999998764
No 283
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.76 E-value=3.2e-05 Score=74.65 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=32.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999875
No 284
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.75 E-value=3.2e-05 Score=76.80 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=42.3
Q ss_pred Ce-eEeeeeEEEEEEecCC-ceEE-EEEEeccCCceEEEeecEEEeccCCchhhhhhhc
Q 014324 123 EI-FLRGHQYLSFCISEVK-TTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFL 178 (426)
Q Consensus 123 ~~-i~~~~~v~~~~~~~~~-~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~ 178 (426)
+. |+.++.|+.+..++++ ..|+ |++.+..+|+..+++|+.||.|.|+--..|-.+.
T Consensus 228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 46 9999999999886554 3444 6666665788888999999999997666665554
No 285
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.74 E-value=0.00028 Score=69.54 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=67.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. . +.+. +
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~------~--~d~~---------------~-------------- 212 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR------H--LDED---------------I-------------- 212 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc------c--cCHH---------------H--------------
Confidence 5899999999999999999999999999998765310 0 0000 0
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.+ ..++ ++.++++.+++.++ ..+.++ +.+|+. +++|.||.
T Consensus 213 ----------------------~~~l~~~~----~~gI~i~~~~~V~~i~~~~--~~v~v~---~~~g~~--i~~D~vl~ 259 (452)
T TIGR03452 213 ----------------------SDRFTEIA----KKKWDIRLGRNVTAVEQDG--DGVTLT---LDDGST--VTADVLLV 259 (452)
T ss_pred ----------------------HHHHHHHH----hcCCEEEeCCEEEEEEEcC--CeEEEE---EcCCCE--EEcCEEEE
Confidence 01122222 2356 88899999987533 345554 455653 89999999
Q ss_pred ccCCchhh
Q 014324 166 ADGCLSSI 173 (426)
Q Consensus 166 AdG~~S~v 173 (426)
|.|.....
T Consensus 260 a~G~~pn~ 267 (452)
T TIGR03452 260 ATGRVPNG 267 (452)
T ss_pred eeccCcCC
Confidence 99987654
No 286
>PRK06116 glutathione reductase; Validated
Probab=97.73 E-value=0.00023 Score=70.23 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=70.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||+|++|+-+|..|++.|.+|+++++.+.+.. . ..+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~~~~----------------------------- 209 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------G--FDPD----------------------------- 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------c--cCHH-----------------------------
Confidence 35899999999999999999999999999998765310 0 0000
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
. +..+.+.|. +.|+ ++.++++.+++.+++ ..+.++ +.+|+. +++|.||
T Consensus 210 ----------~------------~~~l~~~L~---~~GV~i~~~~~V~~i~~~~~-g~~~v~---~~~g~~--i~~D~Vv 258 (450)
T PRK06116 210 ----------I------------RETLVEEME---KKGIRLHTNAVPKAVEKNAD-GSLTLT---LEDGET--LTVDCLI 258 (450)
T ss_pred ----------H------------HHHHHHHHH---HCCcEEECCCEEEEEEEcCC-ceEEEE---EcCCcE--EEeCEEE
Confidence 0 012222232 2477 999999999985433 235554 456654 8999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|....+.
T Consensus 259 ~a~G~~p~~~ 268 (450)
T PRK06116 259 WAIGREPNTD 268 (450)
T ss_pred EeeCCCcCCC
Confidence 9999876655
No 287
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.71 E-value=4.7e-05 Score=68.56 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=35.7
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
+...||||||||.|||.+|..|+.+|.+|+|+|+..+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn 41 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN 41 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence 567899999999999999999999999999999987743
No 288
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.70 E-value=5.1e-05 Score=74.94 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=34.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 34689999999999999999999999999999998764
No 289
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.69 E-value=0.00021 Score=66.41 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=90.8
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCcceeccChhHHH--HHHHHhcCCchhhhccCccee
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQR--IIQSWLNGRPHLLHLATVPLT 80 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~~~~~~~~~~~~~~ 80 (426)
+..+|+|.||-||+-|++|++|..++ .+++.+||++.+..+ -|..+...+++ +++.|- .+.+...+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WH----pGmllegstlQv~FlkDLV-----Tl~~PTs~yS 73 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWH----PGMLLEGSTLQVPFLKDLV-----TLVDPTSPYS 73 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcC----CCcccCCccccccchhhhc-----cccCCCCchH
Confidence 47799999999999999999999875 789999999998642 24434433322 122210 0011111111
Q ss_pred eccccc-cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324 81 IDQNQA-TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI 158 (426)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~ 158 (426)
+ .+.. ..++ +..-.......+.|.+..+++.=++..-- ++|+++|++|...+.+..+.... ...+++. .
T Consensus 74 F-LNYL~~h~R-----Ly~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~-~t~~~~~--y 144 (436)
T COG3486 74 F-LNYLHEHGR-----LYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFV-VTANGTV--Y 144 (436)
T ss_pred H-HHHHHHcch-----HhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEE-EcCCCcE--E
Confidence 1 0000 1111 11112234456778888777754444323 89999999884433333333221 1455554 8
Q ss_pred eecEEEeccCCchhhhhhh
Q 014324 159 KGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 159 ~~d~vI~AdG~~S~vR~~l 177 (426)
+|+-||...|..-.+-.++
T Consensus 145 ~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 145 RARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred EeeeEEEccCCCcCCChHH
Confidence 9999999999876655443
No 290
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.69 E-value=0.00047 Score=65.07 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324 112 LHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS 171 (426)
Q Consensus 112 l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S 171 (426)
+.+-+++.++. |+ ++|+++|.+++..++. ...|. .++|.. +.+|.||.|-|+.+
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~-~~~v~---~~~g~~--i~~~~vvlA~Grsg 230 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNE-VLGVK---LTKGEE--IEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecCCc-eEEEE---ccCCcE--EecCEEEEccCcch
Confidence 34445566654 78 9999999999975442 22233 667766 89999999999876
No 291
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.68 E-value=5.2e-05 Score=72.41 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=41.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHh
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWL 65 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 65 (426)
+||+|||||++|+++|+.|+++|++|+|+|+... ...++..+.++|..++
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~---------~~~~s~gs~d~L~~~~ 50 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS---------ALHFSSGSLDLLSRLP 50 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc---------hhhhhhHHHhHhhhcC
Confidence 5899999999999999999999999999998653 2446666666666553
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.66 E-value=0.00027 Score=74.50 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=69.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . .+.+...
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-----~--~ld~~~~---------------------------- 190 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-----E--QLDQMGG---------------------------- 190 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-----h--hcCHHHH----------------------------
Confidence 4799999999999999999999999999998765210 0 0110000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
..+.+.|. ..|+ ++.++++.++..+.+.....++ +.+|+. +.+|+||.
T Consensus 191 -----------------------~~l~~~L~---~~GV~v~~~~~v~~I~~~~~~~~~~v~---~~dG~~--i~~D~Vv~ 239 (847)
T PRK14989 191 -----------------------EQLRRKIE---SMGVRVHTSKNTLEIVQEGVEARKTMR---FADGSE--LEVDFIVF 239 (847)
T ss_pred -----------------------HHHHHHHH---HCCCEEEcCCeEEEEEecCCCceEEEE---ECCCCE--EEcCEEEE
Confidence 12222232 2477 9999999998743322333444 567775 89999999
Q ss_pred ccCCchhh
Q 014324 166 ADGCLSSI 173 (426)
Q Consensus 166 AdG~~S~v 173 (426)
|.|.....
T Consensus 240 A~G~rPn~ 247 (847)
T PRK14989 240 STGIRPQD 247 (847)
T ss_pred CCCcccCc
Confidence 99987654
No 293
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.66 E-value=0.00037 Score=68.99 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=69.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+.. . ..+..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~d~~~----------------------------- 220 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-----G---EDADA----------------------------- 220 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-----C---CCHHH-----------------------------
Confidence 4799999999999999999999999999998776421 0 00000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+++.|. +.|+ ++.++++.+++.++ ..+.+. +.+|+. +++|.||.
T Consensus 221 ----------------------~~~l~~~L~---~~gV~i~~~~~v~~v~~~~--~~~~v~---~~~g~~--l~~D~vl~ 268 (466)
T PRK07845 221 ----------------------AEVLEEVFA---RRGMTVLKRSRAESVERTG--DGVVVT---LTDGRT--VEGSHALM 268 (466)
T ss_pred ----------------------HHHHHHHHH---HCCcEEEcCCEEEEEEEeC--CEEEEE---ECCCcE--EEecEEEE
Confidence 012222232 2477 88999999987533 345554 456654 89999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|......
T Consensus 269 a~G~~pn~~ 277 (466)
T PRK07845 269 AVGSVPNTA 277 (466)
T ss_pred eecCCcCCC
Confidence 999887654
No 294
>PLN02507 glutathione reductase
Probab=97.66 E-value=0.00036 Score=69.58 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=69.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.. . +.+..
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------~--~d~~~----------------------------- 246 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------G--FDDEM----------------------------- 246 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------c--cCHHH-----------------------------
Confidence 5799999999999999999999999999998765311 0 11000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+++.|. +.|+ ++.++++.+++..+ ..+.+. +.+|+. +++|.||.
T Consensus 247 ----------------------~~~l~~~l~---~~GI~i~~~~~V~~i~~~~--~~~~v~---~~~g~~--i~~D~vl~ 294 (499)
T PLN02507 247 ----------------------RAVVARNLE---GRGINLHPRTNLTQLTKTE--GGIKVI---TDHGEE--FVADVVLF 294 (499)
T ss_pred ----------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEeC--CeEEEE---ECCCcE--EEcCEEEE
Confidence 011223332 2477 89999999997533 345554 456654 89999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|....+.
T Consensus 295 a~G~~pn~~ 303 (499)
T PLN02507 295 ATGRAPNTK 303 (499)
T ss_pred eecCCCCCC
Confidence 999887654
No 295
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.65 E-value=5.7e-05 Score=77.64 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=34.7
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+|+||||||+||++|..|++.|++|+|||+.+.++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 5789999999999999999999999999999998764
No 296
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.65 E-value=0.00044 Score=68.15 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=69.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||..|+-+|..|++.|.+|+++|+.+.+.. . +.+..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------~--~d~~~----------------------------- 209 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------S--FDSMI----------------------------- 209 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------c--cCHHH-----------------------------
Confidence 5899999999999999999999999999998876421 0 11000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.|. ..|+ ++.++++..++.+.+ ..+.++ +.+|+ ..+.+|.||.
T Consensus 210 ----------------------~~~~~~~l~---~~gI~i~~~~~v~~i~~~~~-~~~~v~---~~~g~-~~i~~D~vi~ 259 (450)
T TIGR01421 210 ----------------------SETITEEYE---KEGINVHKLSKPVKVEKTVE-GKLVIH---FEDGK-SIDDVDELIW 259 (450)
T ss_pred ----------------------HHHHHHHHH---HcCCEEEcCCEEEEEEEeCC-ceEEEE---ECCCc-EEEEcCEEEE
Confidence 011222232 2477 889999999875332 234444 44563 2489999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|....+.
T Consensus 260 a~G~~pn~~ 268 (450)
T TIGR01421 260 AIGRKPNTK 268 (450)
T ss_pred eeCCCcCcc
Confidence 999887664
No 297
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.64 E-value=0.00039 Score=68.46 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=68.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||+|++|+-+|..|++.|.+|+++|+.+.+.. . +.+..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------~--~d~~~----------------------------- 209 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------G--FDDDM----------------------------- 209 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------c--cCHHH-----------------------------
Confidence 4799999999999999999999999999998665310 0 00000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.|. +.|+ ++.++++.+++..++ .+.++ +.+|++ +.+|.||.
T Consensus 210 ----------------------~~~l~~~l~---~~gV~i~~~~~v~~i~~~~~--~~~v~---~~~g~~--i~~D~viv 257 (446)
T TIGR01424 210 ----------------------RALLARNME---GRGIRIHPQTSLTSITKTDD--GLKVT---LSHGEE--IVADVVLF 257 (446)
T ss_pred ----------------------HHHHHHHHH---HCCCEEEeCCEEEEEEEcCC--eEEEE---EcCCcE--eecCEEEE
Confidence 011222232 2477 889999999975333 34444 345654 89999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|....+.
T Consensus 258 a~G~~pn~~ 266 (446)
T TIGR01424 258 ATGRSPNTK 266 (446)
T ss_pred eeCCCcCCC
Confidence 999876654
No 298
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.64 E-value=0.00014 Score=76.35 Aligned_cols=34 Identities=24% Similarity=0.573 Sum_probs=29.7
Q ss_pred EEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCC
Q 014324 9 AVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPP 42 (426)
Q Consensus 9 V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~ 42 (426)
|+|||||+||+.+|..|.+. +++|+|||+.+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 68999999999999988775 47999999998753
No 299
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.62 E-value=7.1e-05 Score=70.81 Aligned_cols=39 Identities=38% Similarity=0.580 Sum_probs=34.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~ 43 (426)
...+|+|||||.|||+||..|-++| .+|+|+|...+++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 4568999999999999999999776 58999999999875
No 300
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.61 E-value=0.00038 Score=73.21 Aligned_cols=98 Identities=24% Similarity=0.354 Sum_probs=66.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. . .+.+..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-----~--~ld~~~----------------------------- 184 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-----K--QLDQTA----------------------------- 184 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-----h--hcCHHH-----------------------------
Confidence 5799999999999999999999999999998664210 0 000000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
...+.+.|. ..|+ ++.+++++++.. ++....++ +.+|+. +.+|+||.
T Consensus 185 ----------------------~~~l~~~l~---~~GV~v~~~~~v~~i~~--~~~~~~v~---~~dG~~--i~~D~Vi~ 232 (785)
T TIGR02374 185 ----------------------GRLLQRELE---QKGLTFLLEKDTVEIVG--ATKADRIR---FKDGSS--LEADLIVM 232 (785)
T ss_pred ----------------------HHHHHHHHH---HcCCEEEeCCceEEEEc--CCceEEEE---ECCCCE--EEcCEEEE
Confidence 012222232 2477 889999888863 33333444 567875 89999999
Q ss_pred ccCCchh
Q 014324 166 ADGCLSS 172 (426)
Q Consensus 166 AdG~~S~ 172 (426)
|.|....
T Consensus 233 a~G~~Pn 239 (785)
T TIGR02374 233 AAGIRPN 239 (785)
T ss_pred CCCCCcC
Confidence 9998644
No 301
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.56 E-value=9.8e-05 Score=74.91 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=34.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+|+||||||+||++|..|++.|++|+|+|+.+.++
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4689999999999999999999999999999998864
No 302
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.55 E-value=0.00012 Score=69.73 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=34.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+|||||++|+.+|..|++.|++|++||+.+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 34699999999999999999999999999999988753
No 303
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=0.00072 Score=66.54 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=67.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+.. . . .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-~--~-------------------------------- 198 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-----R-E--D-------------------------------- 198 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-----C-c--C--------------------------------
Confidence 4899999999999999999999999999998765321 0 0 0
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.+.+.++ .|+ ++.++++.+++.+ +..+.++ .++++ +.+|.||
T Consensus 199 -----------------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~--~~~v~v~---~~~g~---i~~D~vl 247 (441)
T PRK08010 199 -----------------------RDIADNIATILRDQGVDIILNAHVERISHH--ENQVQVH---SEHAQ---LAVDALL 247 (441)
T ss_pred -----------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEE---EcCCe---EEeCEEE
Confidence 001111222222 477 8899999998753 2345544 33443 7899999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|..+...
T Consensus 248 ~a~G~~pn~~ 257 (441)
T PRK08010 248 IASGRQPATA 257 (441)
T ss_pred EeecCCcCCC
Confidence 9999887653
No 304
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.54 E-value=0.00065 Score=66.58 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=32.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 35899999999999999999999999999998765
No 305
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.52 E-value=0.0012 Score=67.48 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 47999999999999999999999999999998764
No 306
>PRK14694 putative mercuric reductase; Provisional
Probab=97.52 E-value=0.00079 Score=66.78 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999863
No 307
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.51 E-value=0.0088 Score=53.25 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcC------CcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAG------WDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G------~~v~v~E~~~~~~~ 43 (426)
+..+|+|||||+.|..+|+.|++++ +.|++||++.-.+.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 3478999999999999999999997 89999999987654
No 308
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.51 E-value=0.00013 Score=72.42 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=34.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
..+|+||||||+|+++|..|+++|++|+|||+.+.++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG 179 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 3699999999999999999999999999999998754
No 309
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0028 Score=57.53 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=34.0
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
-+||.||||||-+||++|...+..|.+|.++|--..-+
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP 55 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTP 55 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCC
Confidence 36899999999999999999999999999999776543
No 310
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.48 E-value=0.0018 Score=59.97 Aligned_cols=99 Identities=23% Similarity=0.178 Sum_probs=67.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||+|++|+-+|..|++.+.+|+++++.+... ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~----------~~------------------------------- 179 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR----------AE------------------------------- 179 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC----------cC-------------------------------
Confidence 3589999999999999999999999999998864310 00
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.|.+ ..++ +++++++.+++.+ .....+++.+..+|+..++.+|.||
T Consensus 180 ------------------------~~~~~~l~~--~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 180 ------------------------KILLDRLRK--NPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred ------------------------HHHHHHHHh--CCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEccEEE
Confidence 011122221 1367 8889999988742 2223344333345666679999999
Q ss_pred eccCCchhh
Q 014324 165 AADGCLSSI 173 (426)
Q Consensus 165 ~AdG~~S~v 173 (426)
.|.|.....
T Consensus 232 ~a~G~~~~~ 240 (300)
T TIGR01292 232 IAIGHEPNT 240 (300)
T ss_pred EeeCCCCCh
Confidence 999966443
No 311
>PLN03000 amine oxidase
Probab=97.48 E-value=0.00014 Score=75.40 Aligned_cols=39 Identities=38% Similarity=0.645 Sum_probs=36.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
...+|+|||||++||++|..|++.|++|+|+|++..++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 357999999999999999999999999999999998765
No 312
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.47 E-value=0.00088 Score=65.82 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=32.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 58999999999999999999999999999987753
No 313
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.47 E-value=0.0014 Score=65.70 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=66.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. . .
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------~------------~------------------------ 390 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------A------------D------------------------ 390 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC------h------------h------------------------
Confidence 589999999999999999999999999998654320 0 0
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEEE
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.|.+ ..|+ +++++.+.+++. ++..+ .+++.+..+|+..++.+|.||
T Consensus 391 -----------------------~~l~~~l~~--~~gV~i~~~~~v~~i~~--~~~~v~~v~~~~~~~~~~~~i~~D~vi 443 (515)
T TIGR03140 391 -----------------------KVLQDKLKS--LPNVDILTSAQTTEIVG--DGDKVTGIRYQDRNSGEEKQLDLDGVF 443 (515)
T ss_pred -----------------------HHHHHHHhc--CCCCEEEECCeeEEEEc--CCCEEEEEEEEECCCCcEEEEEcCEEE
Confidence 001112221 1477 889999998873 32233 255444445655679999999
Q ss_pred eccCCchh
Q 014324 165 AADGCLSS 172 (426)
Q Consensus 165 ~AdG~~S~ 172 (426)
.|.|....
T Consensus 444 ~a~G~~Pn 451 (515)
T TIGR03140 444 VQIGLVPN 451 (515)
T ss_pred EEeCCcCC
Confidence 99997653
No 314
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.45 E-value=0.00015 Score=67.69 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=33.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcE--EEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDV--VVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v--~v~E~~~~~~~ 43 (426)
..++|+|||||++||++|+.|++++.+| +|||+.++.+.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 4579999999999999999999998765 55999998764
No 315
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.44 E-value=0.00097 Score=65.72 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=31.6
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||||++|+-+|..|.+.|.+|+++++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 35899999999999999999999999999987664
No 316
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.44 E-value=0.0011 Score=66.30 Aligned_cols=98 Identities=24% Similarity=0.324 Sum_probs=66.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+++. .+. .. +.+..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------~~--~d~~~----------------------------- 224 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL------RG--FDRQC----------------------------- 224 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc------cc--CCHHH-----------------------------
Confidence 47999999999999999999999999999863 211 00 11000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
+..+.+.|. ..|+ ++.++++..++..+ ..+.+. +.+|+. +.+|.||.
T Consensus 225 ----------------------~~~l~~~l~---~~GV~i~~~~~v~~v~~~~--~~~~v~---~~~g~~--i~~D~vl~ 272 (499)
T PTZ00052 225 ----------------------SEKVVEYMK---EQGTLFLEGVVPINIEKMD--DKIKVL---FSDGTT--ELFDTVLY 272 (499)
T ss_pred ----------------------HHHHHHHHH---HcCCEEEcCCeEEEEEEcC--CeEEEE---ECCCCE--EEcCEEEE
Confidence 011222232 2467 88898888887533 234444 456764 78999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|..+.+.
T Consensus 273 a~G~~pn~~ 281 (499)
T PTZ00052 273 ATGRKPDIK 281 (499)
T ss_pred eeCCCCCcc
Confidence 999987654
No 317
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.43 E-value=0.0012 Score=65.71 Aligned_cols=32 Identities=38% Similarity=0.669 Sum_probs=29.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999863
No 318
>PRK14727 putative mercuric reductase; Provisional
Probab=97.40 E-value=0.0012 Score=65.54 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=65.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||+.|+-+|..|++.|.+|+++++..... . ..+..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~------~---~d~~~----------------------------- 230 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF------R---EDPLL----------------------------- 230 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC------c---chHHH-----------------------------
Confidence 579999999999999999999999999998642110 0 00000
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~ 165 (426)
...+++.|. +.|+ ++.++++..++.++ ..+.+. ..++ ++.+|.||.
T Consensus 231 ----------------------~~~l~~~L~---~~GV~i~~~~~V~~i~~~~--~~~~v~---~~~g---~i~aD~Vlv 277 (479)
T PRK14727 231 ----------------------GETLTACFE---KEGIEVLNNTQASLVEHDD--NGFVLT---TGHG---ELRAEKLLI 277 (479)
T ss_pred ----------------------HHHHHHHHH---hCCCEEEcCcEEEEEEEeC--CEEEEE---EcCC---eEEeCEEEE
Confidence 011222232 2477 88999999987533 245444 3344 278999999
Q ss_pred ccCCchhhh
Q 014324 166 ADGCLSSIR 174 (426)
Q Consensus 166 AdG~~S~vR 174 (426)
|.|..+.+.
T Consensus 278 A~G~~pn~~ 286 (479)
T PRK14727 278 STGRHANTH 286 (479)
T ss_pred ccCCCCCcc
Confidence 999987664
No 319
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.39 E-value=0.0014 Score=65.13 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=67.2
Q ss_pred CccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324 6 KGKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID 82 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 82 (426)
..+|+|||||+.|+-+|..++. .|.+|+|+|+.+.+.. . +.+..
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------~--~d~~~------------------------- 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------G--FDSTL------------------------- 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------c--cCHHH-------------------------
Confidence 3579999999999999976654 4999999998876421 0 11000
Q ss_pred cccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324 83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d 161 (426)
+..+.+.|. +.|+ ++.++++.+++..++ ..+.++ +.+|+. +++|
T Consensus 234 --------------------------~~~l~~~L~---~~GI~i~~~~~v~~i~~~~~-~~~~v~---~~~g~~--i~~D 278 (486)
T TIGR01423 234 --------------------------RKELTKQLR---ANGINIMTNENPAKVTLNAD-GSKHVT---FESGKT--LDVD 278 (486)
T ss_pred --------------------------HHHHHHHHH---HcCCEEEcCCEEEEEEEcCC-ceEEEE---EcCCCE--EEcC
Confidence 012222232 2477 899999999875433 224444 345654 8999
Q ss_pred EEEeccCCchhhh
Q 014324 162 LLVAADGCLSSIR 174 (426)
Q Consensus 162 ~vI~AdG~~S~vR 174 (426)
.||.|.|....+.
T Consensus 279 ~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 279 VVMMAIGRVPRTQ 291 (486)
T ss_pred EEEEeeCCCcCcc
Confidence 9999999887664
No 320
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.38 E-value=0.0015 Score=62.21 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=33.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 41 (426)
.+.+|+|||||-+|+.+|..|.++- .+|+++|++...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 3468999999999999999999975 899999999874
No 321
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00016 Score=74.57 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=35.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..+|+|||.|||||++|-+|-+.|+.|+||||...++.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 36899999999999999999999999999999999764
No 322
>PLN02976 amine oxidase
Probab=97.36 E-value=0.00022 Score=76.73 Aligned_cols=39 Identities=33% Similarity=0.533 Sum_probs=35.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
..++|+|||||++|+++|+.|++.|++|+|||++..++.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 347999999999999999999999999999999887754
No 323
>PTZ00058 glutathione reductase; Provisional
Probab=97.36 E-value=0.0017 Score=65.36 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=68.0
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.. . +.+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------~--~d~~i~--------------------------- 281 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------K--FDETII--------------------------- 281 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------c--CCHHHH---------------------------
Confidence 45899999999999999999999999999998765321 0 000000
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.|. +.|+ ++.++++.+++.+++ ..+.+. ..++. .++++|.|+
T Consensus 282 ------------------------~~l~~~L~---~~GV~i~~~~~V~~I~~~~~-~~v~v~---~~~~~-~~i~aD~Vl 329 (561)
T PTZ00058 282 ------------------------NELENDMK---KNNINIITHANVEEIEKVKE-KNLTIY---LSDGR-KYEHFDYVI 329 (561)
T ss_pred ------------------------HHHHHHHH---HCCCEEEeCCEEEEEEecCC-CcEEEE---ECCCC-EEEECCEEE
Confidence 11222232 2477 889999998875322 234443 22333 248999999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|....+.
T Consensus 330 vA~Gr~Pn~~ 339 (561)
T PTZ00058 330 YCVGRSPNTE 339 (561)
T ss_pred ECcCCCCCcc
Confidence 9999876544
No 324
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.35 E-value=0.0028 Score=63.66 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=69.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA 86 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
.+|+|||||.+|+-+|..|+..|.+|+|+++.+.+.. .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------------------------~----------------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------------------------D----------------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------------------------c-----------------
Confidence 5899999999999999999999999999987764210 0
Q ss_pred cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecEEE
Q 014324 87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI 164 (426)
..+.+.|.+ ..++ +++++.+++++. ++..++ +++.+..+|+..++.+|.|+
T Consensus 390 -----------------------~~l~~~l~~--~~gI~i~~~~~v~~i~~--~~g~v~~v~~~~~~~g~~~~i~~D~v~ 442 (517)
T PRK15317 390 -----------------------QVLQDKLRS--LPNVTIITNAQTTEVTG--DGDKVTGLTYKDRTTGEEHHLELEGVF 442 (517)
T ss_pred -----------------------HHHHHHHhc--CCCcEEEECcEEEEEEc--CCCcEEEEEEEECCCCcEEEEEcCEEE
Confidence 001111211 1477 899999999874 323332 55544556776679999999
Q ss_pred eccCCchhh
Q 014324 165 AADGCLSSI 173 (426)
Q Consensus 165 ~AdG~~S~v 173 (426)
.|.|....+
T Consensus 443 ~~~G~~p~~ 451 (517)
T PRK15317 443 VQIGLVPNT 451 (517)
T ss_pred EeECCccCc
Confidence 999987543
No 325
>PRK13984 putative oxidoreductase; Provisional
Probab=97.34 E-value=0.00026 Score=72.52 Aligned_cols=38 Identities=37% Similarity=0.517 Sum_probs=34.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
...+|+|||+||+|+++|..|+++|++|+|||+.+.++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35689999999999999999999999999999998764
No 326
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.33 E-value=0.00025 Score=63.64 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=31.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~~ 41 (426)
.+++|+|||||-+|+++|..+.++ |- +|.|+|....-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 568999999999999999999876 43 78899987763
No 327
>PRK13748 putative mercuric reductase; Provisional
Probab=97.30 E-value=0.0016 Score=66.21 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=30.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
.+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 57999999999999999999999999999874
No 328
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00066 Score=60.43 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcC-------CcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAG-------WDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~~~~ 43 (426)
..++|+|||+|..||+.|+.+.+.+ .+|+|++-+..+..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T 47 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT 47 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence 3469999999999999998887743 68999977776543
No 329
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00031 Score=64.56 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~ 43 (426)
.+..|+|||+||||+.+|..|-++ +++|.|+|+.+.|..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 456999999999999999888774 689999999999754
No 330
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.26 E-value=0.0019 Score=62.87 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=34.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 42 (426)
.+|+|||+|+.|+.+|..|+++|++|+++|+.+.+.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 589999999999999999999999999999999864
No 331
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.21 E-value=0.00029 Score=71.03 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~ 40 (426)
||||||||.+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999964
No 332
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00035 Score=70.21 Aligned_cols=37 Identities=43% Similarity=0.456 Sum_probs=34.2
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..++|++|||+|.+|.++|..|+..|.+|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4579999999999999999999988999999999964
No 333
>PRK10262 thioredoxin reductase; Provisional
Probab=97.19 E-value=0.0073 Score=56.71 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=31.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 35899999999999999999999999999998764
No 334
>PLN02785 Protein HOTHEAD
Probab=97.15 E-value=0.00048 Score=69.71 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=32.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
..||+||||||.+|+.+|..|++ +.+|+|+|+...+
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~ 89 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP 89 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence 46999999999999999999999 6899999999753
No 335
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00047 Score=62.21 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=33.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
...|.|||||.||.-+|++++++|++|.++|-++..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 457999999999999999999999999999998754
No 336
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.10 E-value=0.0041 Score=60.84 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=28.7
Q ss_pred cEEEEcCChHHHHHHHHHHH--------------cCCcEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLR--------------AGWDVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~--------------~G~~v~v~E~~~~~ 41 (426)
+|+|||||++|+-+|..|+. .+.+|+++|+.+.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 79999999999999998875 36788888887653
No 337
>PLN02546 glutathione reductase
Probab=97.08 E-value=0.0044 Score=62.44 Aligned_cols=101 Identities=17% Similarity=0.104 Sum_probs=67.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . +.+..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------~--~d~~~---------------------------- 295 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------G--FDEEV---------------------------- 295 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------c--cCHHH----------------------------
Confidence 35899999999999999999999999999998765321 0 00000
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV 164 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI 164 (426)
+..+++.|. ..|+ ++.++++.+++..++ ..+.+. ..+++ ...+|.||
T Consensus 296 -----------------------~~~l~~~L~---~~GV~i~~~~~v~~i~~~~~-g~v~v~---~~~g~--~~~~D~Vi 343 (558)
T PLN02546 296 -----------------------RDFVAEQMS---LRGIEFHTEESPQAIIKSAD-GSLSLK---TNKGT--VEGFSHVM 343 (558)
T ss_pred -----------------------HHHHHHHHH---HCCcEEEeCCEEEEEEEcCC-CEEEEE---ECCeE--EEecCEEE
Confidence 011222232 2477 889999999875333 334443 33333 24589999
Q ss_pred eccCCchhhh
Q 014324 165 AADGCLSSIR 174 (426)
Q Consensus 165 ~AdG~~S~vR 174 (426)
.|.|......
T Consensus 344 va~G~~Pnt~ 353 (558)
T PLN02546 344 FATGRKPNTK 353 (558)
T ss_pred EeeccccCCC
Confidence 9999887764
No 338
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.04 E-value=0.0074 Score=57.50 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (426)
.+|+|||+|+.|+-+|..|.+.|.+ |+|++++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 4799999999999999999999997 999987643
No 339
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0038 Score=59.27 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..|||+|||||=||.-+|.+.+|.|-+.+++-.+-+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 568999999999999999999999999998876654
No 340
>PRK12831 putative oxidoreductase; Provisional
Probab=97.02 E-value=0.0046 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..|.+.|.+|++++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 5899999999999999999999999999988664
No 341
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0039 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=31.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||.|||+-++|+.+++..++.++||--..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~ 42 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA 42 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeec
Confidence 4899999999999999999999999999996554
No 342
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.98 E-value=0.0048 Score=58.82 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=75.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ 85 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (426)
...|++||+|-.|+-+|..|.-.+++|+++++.+.+-. + + +.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-----~-l-f~------------------------------- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-----R-L-FG------------------------------- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-----h-h-hh-------------------------------
Confidence 45699999999999999999999999999999887532 1 0 00
Q ss_pred ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324 86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL 163 (426)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 163 (426)
..+.+...+.++ +++ ++.++.+.+++.++++..+.|. +.||.+ +.||+|
T Consensus 255 ------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~---l~dg~~--l~adlv 305 (478)
T KOG1336|consen 255 ------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK---LKDGKT--LEADLV 305 (478)
T ss_pred ------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE---eccCCE--eccCeE
Confidence 111122233333 477 9999999999977765555566 778887 899999
Q ss_pred EeccCCchhhh
Q 014324 164 VAADGCLSSIR 174 (426)
Q Consensus 164 I~AdG~~S~vR 174 (426)
|.+.|+.+.+.
T Consensus 306 v~GiG~~p~t~ 316 (478)
T KOG1336|consen 306 VVGIGIKPNTS 316 (478)
T ss_pred EEeeccccccc
Confidence 99999986553
No 343
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.95 E-value=0.0057 Score=55.85 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=34.4
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
...+|.+|||||-.|+++|...+..|.+|.|+|..-..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l 55 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL 55 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence 35799999999999999999999999999999987544
No 344
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.93 E-value=0.0064 Score=59.93 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=31.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 5899999999999999999999999999998764
No 345
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.92 E-value=0.025 Score=54.76 Aligned_cols=38 Identities=37% Similarity=0.505 Sum_probs=33.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPT 43 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~ 43 (426)
+.++=|||+|+|+|++|..|-|- |-+|.|+|+.+.++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 35788999999999999999986 569999999998764
No 346
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.74 E-value=0.0057 Score=58.30 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=33.5
Q ss_pred CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCc-hhhhhhh
Q 014324 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCL-SSIRQSF 177 (426)
Q Consensus 122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~-S~vR~~l 177 (426)
.|+ |+.++.|++++ ++ .|+ .++|+. +|.++.+|=|.|.. |++-+.+
T Consensus 222 ~GV~v~l~~~Vt~v~--~~--~v~-----~~~g~~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 222 LGVEVLLGTPVTEVT--PD--GVT-----LKDGEE-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCCEEEcCCceEEEC--CC--cEE-----EccCCe-eEecCEEEEcCCCcCChhhhhc
Confidence 488 99999999987 33 455 345553 59999999999974 5555543
No 347
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.66 E-value=0.02 Score=58.20 Aligned_cols=64 Identities=25% Similarity=0.231 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
..+...|.+.+. .++ ++.++.++++..++++..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 356666766554 488 9999999999865444444455545568888789999999999998864
No 348
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.62 E-value=0.0018 Score=61.06 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
...+|++|||+|.-||.+|..|++.|.+|+|+|++...+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 3579999999999999999999999999999999966543
No 349
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.55 E-value=0.035 Score=56.26 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 35899999999999999999999999999998764
No 350
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.48 E-value=0.0035 Score=52.09 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=30.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+|.|+|||..|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998865
No 351
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.34 E-value=0.048 Score=53.96 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=31.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
..+|+|||||..|+-+|..|.+.|. +|++++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 3589999999999999999999998 8999988653
No 352
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.33 E-value=0.0053 Score=52.22 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=29.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||+|..|...|..++++|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999765
No 353
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.33 E-value=0.0058 Score=57.13 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
|.+..++|+|||+|-.|.++|..|++.|++|+++.|..
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34566789999999999999999999999999998864
No 354
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.31 E-value=0.0034 Score=53.58 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=27.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|.|||.|-.||.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998875
No 355
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.29 E-value=0.025 Score=59.65 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..+.+.|.+ |+|+++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 5899999999999999999999997 999998754
No 356
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0053 Score=54.25 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=45.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC--C--CCcceeccChhHHHHHHHHhcC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG--S--PTGAGLGLDRPAQRIIQSWLNG 67 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~--~~~~~~~l~~~~~~~l~~~~~~ 67 (426)
++++|||+|..|.++|..|.+.|++|+++|+.+..... + .....+..+..-.+.|+++|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 47999999999999999999999999999999875321 1 1122444555566678877763
No 357
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.005 Score=60.97 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=31.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+|+|||.|++|+++|..|.++|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988764
No 358
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.22 E-value=0.036 Score=59.46 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=31.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..+.+.|.+|+++.+++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 5799999999999999999999999999987753
No 359
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.20 E-value=0.0083 Score=55.89 Aligned_cols=40 Identities=35% Similarity=0.523 Sum_probs=36.9
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
||++...+|+|||+|-+|.++|+.|...|+ +++++|....
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 888888999999999999999999999998 7999999665
No 360
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.18 E-value=0.0098 Score=49.25 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E 36 (426)
...+|+|||||..|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45789999999999999999999999999994
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.16 E-value=0.03 Score=57.93 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..|.+.|. +|+|+++++.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 589999999999999999999996 5999987764
No 362
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.13 E-value=0.18 Score=47.54 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=41.4
Q ss_pred ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324 107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173 (426)
Q Consensus 107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v 173 (426)
++-..+...|.+.+. .|+ ++.+++|++++.++ ..+ .|. ..+| + ++||.||.|+|++|.-
T Consensus 134 v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~---~~~g-~--~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 134 VDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIV---TPSG-D--VQADQVVLAAGAWAGE 195 (337)
T ss_pred EChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEE---cCCC-E--EECCEEEEcCChhhhh
Confidence 444566666666554 577 99999999998633 333 343 4455 3 7999999999998763
No 363
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.10 E-value=0.0058 Score=60.61 Aligned_cols=37 Identities=35% Similarity=0.628 Sum_probs=34.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~ 41 (426)
.+||.||||||-||.++|..|++. .++|+|+|+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 569999999999999999999987 5899999999887
No 364
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.0082 Score=59.80 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=31.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||+|++|+.+|..|+++|++|+++|+.+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 35799999999999999999999999999997753
No 365
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.07 E-value=0.027 Score=56.70 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324 107 AHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF 177 (426)
Q Consensus 107 ~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l 177 (426)
++-..+...+.+.+ ..|+ +..+++|+++..+++ ..+.|++.+..+|+..+++|+.||.|.|.+|. +.+.+
T Consensus 125 vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 197 (516)
T TIGR03377 125 VDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA 197 (516)
T ss_pred ECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc
Confidence 34444544454444 4588 999999999986432 22235544445676667999999999999875 44443
No 366
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.03 E-value=0.007 Score=56.00 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998765
No 367
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.02 E-value=0.0074 Score=55.49 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+|.|||+|..|...|..|++.|++|+++|+.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 48999999999999999999999999999998873
No 368
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.0097 Score=58.78 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=33.8
Q ss_pred CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
.+...+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4556789999999999999999999999999999975
No 369
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.98 E-value=0.054 Score=51.82 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=29.0
Q ss_pred CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
.++ ++.++++..+. ++ .+. +++|++ +.+|.||.|.|....
T Consensus 204 ~gV~v~~~~~v~~i~--~~--~v~-----~~~g~~--i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 204 RGIEVHEGAPVTRGP--DG--ALI-----LADGRT--LPADAILWATGARAP 244 (364)
T ss_pred CCCEEEeCCeeEEEc--CC--eEE-----eCCCCE--EecCEEEEccCCChh
Confidence 467 88888888775 22 333 456764 899999999997653
No 370
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.85 E-value=0.054 Score=56.15 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=29.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 479999999999999999999996 6999888754
No 371
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.83 E-value=0.062 Score=53.23 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=30.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 589999999999999999999995 7999998765
No 372
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.82 E-value=0.027 Score=53.57 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324 109 WADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS 171 (426)
Q Consensus 109 r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S 171 (426)
-..+..+|...++ .|+ |+++++|.+++ ++ .+.+. ..++. ..++||.||.|+|..|
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~--~~~v~---~~~~~-~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GG--TLRFE---TPDGQ-STIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CC--cEEEE---ECCCc-eEEecCEEEEcCCCcc
Confidence 3667777777776 488 99999999992 33 23343 22222 2389999999999876
No 373
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.73 E-value=0.012 Score=54.96 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=31.4
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||+|..|..+|..|+++|++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999875
No 374
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.69 E-value=0.038 Score=59.98 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=29.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG 39 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (426)
.+|+|||+|+.|+-+|..|++.|. .|+|+|..+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 589999999999999999999996 578888654
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.68 E-value=0.017 Score=53.80 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||+|..|...|..++.+|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998875
No 376
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.67 E-value=0.58 Score=45.04 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324 107 AHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS 172 (426)
Q Consensus 107 ~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~ 172 (426)
++-..+.+.|.+.+..|+ +++++.|.+++.+. ..+.++ +.+|.. ++||.||.|+|.++.
T Consensus 132 idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~--~~~~v~---t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 132 LSPPQLCRALLAHAGIRLTLHFNTEITSLERDG--EGWQLL---DANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred cChHHHHHHHHhccCCCcEEEeCCEEEEEEEcC--CeEEEE---eCCCCE--EEcCEEEEcCCcccc
Confidence 455667677777766677 99999999998643 345555 556664 789999999999875
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.67 E-value=0.015 Score=47.82 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=29.5
Q ss_pred EEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
|+|+|+|-.|+..|..|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998877
No 378
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.67 E-value=0.12 Score=51.41 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=27.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG 39 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (426)
.+|+|||||..|+-+|..+.+.|. +|++++...
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 579999999999999998888886 677665444
No 379
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.64 E-value=0.017 Score=50.25 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
....+|+|||||.+|..-+..|.+.|.+|+|++...
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 345689999999999999999999999999998643
No 380
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.63 E-value=0.016 Score=53.49 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=31.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998764
No 381
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.53 E-value=0.024 Score=53.01 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=35.5
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP 41 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 41 (426)
|+.....+|+|||+|-.|.+.|..++..|+ +++++|..+..
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 444456799999999999999999999996 99999998874
No 382
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.50 E-value=0.043 Score=52.56 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=32.6
Q ss_pred CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR 174 (426)
Q Consensus 122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR 174 (426)
.++ +++++.++.+.... ..+. +.+|++ ++++.+|.|+|. |+.+
T Consensus 140 ~gIe~~~~t~v~~~D~~~--K~l~-----~~~Ge~--~kys~LilATGs-~~~~ 183 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLAS--KTLV-----LGNGET--LKYSKLIIATGS-SAKT 183 (478)
T ss_pred cCceEEEcceeEEeeccc--cEEE-----eCCCce--eecceEEEeecC-cccc
Confidence 366 88999999998643 3444 678887 899999999999 4443
No 383
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.44 E-value=0.021 Score=55.23 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+.+||+|+|.|+.-..+|.+|++.|.+|+.+|+++..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG 41 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence 579999999999999999999999999999999998764
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.44 E-value=0.009 Score=45.63 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+.+..+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3456789999999999999999999999999997764
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.43 E-value=0.068 Score=50.51 Aligned_cols=42 Identities=31% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCL 170 (426)
Q Consensus 122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~ 170 (426)
.++ +..++.|..+. ++ .+++. ..+|+..+|.+-++|-|+|..
T Consensus 286 ~~I~~~~~t~Vk~V~--~~--~I~~~---~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVT--EK--TIHAK---TKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred ccceeecccEEEeec--Cc--EEEEE---cCCCceeeecceEEEecCCCC
Confidence 477 88899888876 22 45555 458888889999999999974
No 386
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.40 E-value=0.02 Score=53.06 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=33.5
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
|+.+ .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~--~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 1 MAEI--KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CCCc--CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5554 3699999999999999999999999999998775
No 387
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.38 E-value=0.017 Score=56.13 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=32.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998765
No 388
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.36 E-value=0.13 Score=55.29 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=30.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~ 40 (426)
..+|+|||||..|+-+|..+.+. |. +|++++++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 35899999999999999988876 85 7999998764
No 389
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.32 E-value=0.024 Score=52.72 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=31.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999964
No 390
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.30 E-value=0.027 Score=47.28 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+.+|+|+|+|.+|..||..|...|.+|+++|....
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 457999999999999999999999999999998654
No 391
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.19 E-value=0.026 Score=48.92 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (426)
....+|+|||||-.|...|..|.+.|.+|+|+++
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 4567999999999999999999999999999975
No 392
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.18 E-value=0.081 Score=53.09 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||+|.+|.=.|..|++...+|.+.=|+..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 46899999999999999999999889988877754
No 393
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.17 E-value=0.023 Score=52.43 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=31.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|+|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998765
No 394
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.16 E-value=0.024 Score=52.74 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=30.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+|+|||+|-.|.++|..|++.|.+|++++|..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999854
No 395
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.13 E-value=0.027 Score=51.77 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=31.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999998765
No 396
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.13 E-value=0.027 Score=52.05 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=31.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998765
No 397
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.10 E-value=0.028 Score=52.34 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=29.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEK 37 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (426)
+|+|||+|..|.++|..|+++|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999988
No 398
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.04 E-value=0.027 Score=52.76 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=32.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|.|||.|=+||+.|..|++.|++|+++|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998876
No 399
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.98 E-value=0.033 Score=52.04 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=31.2
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|.|||+|..|...|..|++.|++|+++|+...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4699999999999999999999999999997654
No 400
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.95 E-value=0.034 Score=52.67 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=30.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
++|+|||+|..|...|..|+++|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 369999999999999999999999999999853
No 401
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.91 E-value=0.18 Score=54.69 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=28.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (426)
.+|+|||||..|+-+|..+.+.|.+ |+++.++..
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~ 606 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSE 606 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCc
Confidence 5899999999999999999999985 777766543
No 402
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.89 E-value=0.031 Score=44.99 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.4
Q ss_pred EEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|+|+|+.+.++|..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999976
No 403
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.87 E-value=0.037 Score=51.53 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=30.3
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
+|.|||+|.+|.++|+.|+++|+ +++++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999998765
No 404
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.84 E-value=0.043 Score=50.92 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
++|.|||+|..|+..|..|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 579999999999999999999887 8999999544
No 405
>PRK04148 hypothetical protein; Provisional
Probab=94.78 E-value=0.03 Score=44.51 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=30.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3579999999 999999999999999999988775
No 406
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.74 E-value=0.055 Score=43.96 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.4
Q ss_pred ccEEEEcC-ChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 7 GKAVIVGG-SIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
++|.|||+ |..|.++|+.|...++ +++++|....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 47999999 9999999999999975 6999998865
No 407
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.037 Score=55.22 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=34.9
Q ss_pred CCCCCC-ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 1 MEKKEK-GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 1 m~~~~~-~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
||.+.. .+|.|||+|..|...|..|+++|++|+++|+.+..
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 444333 46999999999999999999999999999998873
No 408
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.70 E-value=0.046 Score=50.92 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
|..+...+|+|||+|..|.++|..|.+.|+ +|.++++...
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 555555689999999999999999999985 7888987653
No 409
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.68 E-value=0.035 Score=54.92 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=32.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..-+|+|+|+|++|+.++..++..|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 356899999999999999999999999999998765
No 410
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.68 E-value=0.22 Score=53.35 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=29.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHc-C-CcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRA-G-WDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~-G-~~v~v~E~~~~ 40 (426)
.+|+|||||.+|+-+|..+.+. | .+|+++.+++.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 5899999999999999988877 5 48999998764
No 411
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.64 E-value=0.094 Score=53.02 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=30.1
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..-+|||||.-||-+|..|...|++|.|++-.+.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~ 179 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT 179 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecch
Confidence 3468999999999999999999999999876654
No 412
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.62 E-value=0.055 Score=53.32 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=33.6
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+...+|+|+|.|.+|+++|..|+++|.+|+++|....+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 44568999999999999999999999999999977653
No 413
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.55 E-value=0.051 Score=51.89 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
...+|+|||+|.+|+.+|..|.+.|.+|+++|++..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~ 201 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID 201 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 456899999999999999999999999999998653
No 414
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.50 E-value=0.05 Score=42.39 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=29.0
Q ss_pred EEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
|+|+|.|..|..++..|.+.+.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999998889999999975
No 415
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.42 E-value=0.039 Score=53.75 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=31.2
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998765
No 416
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.40 E-value=0.054 Score=43.63 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=31.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
+.+|+|+|+|-.|...|..|++.|+ +++|+|...-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999998 6999998765
No 417
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.37 E-value=2.9 Score=41.90 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhh
Q 014324 110 ADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSF 177 (426)
Q Consensus 110 ~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l 177 (426)
..+.+.|.+.+++ |+ |+++++|.++..++ +..+.|+ ..+|+. ++||.||.|.+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~---~~~g~~--~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVH---LADGER--LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEE---ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence 4566667776654 77 99999999998653 3334555 566765 78999999998876665544
No 418
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.35 E-value=0.067 Score=49.87 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+.++|.|||+|-.|.++|..|+++|++|++++|...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 456899999999999999999999999999998764
No 419
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.31 E-value=0.067 Score=52.79 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
....|+|+|+|.+|+++|..|++.|.+|++.|+...
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 446799999999999999999999999999997654
No 420
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.28 E-value=0.073 Score=46.05 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
...+|+|||+|-.|...|..|++.|+ +++++|...-
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 45789999999999999999999999 6999998854
No 421
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.25 E-value=0.06 Score=50.66 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=30.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+|.|||+|..|.++|..|+++|.+|.++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999998854
No 422
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.21 E-value=0.37 Score=49.88 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=29.8
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+|+|||+|..|+-+|..+.+.|. +|+++++++.
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 589999999999999998888885 7999988754
No 423
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.19 E-value=0.075 Score=50.03 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=31.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|.|||+|..|.+.|..|+++|++|++++|.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999999654
No 424
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.19 E-value=0.06 Score=51.79 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=31.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
...|+|+|+|+.|+.+|..++..|.+|+++|..+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35899999999999999999999999999998764
No 425
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.14 E-value=0.064 Score=51.94 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=34.0
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
..+|+|+|-|-+|+++|..|.+.|.+|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999988876
No 426
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.14 E-value=0.044 Score=53.40 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=34.2
Q ss_pred eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcC
Q 014324 125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLS 179 (426)
Q Consensus 125 i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~ 179 (426)
|+++++|+.|+.++ ..|+++ .++|+. ++||.||.|.......+..+.+
T Consensus 226 i~l~~~V~~I~~~~--~~v~v~---~~~g~~--~~ad~VI~a~p~~~l~~i~~~p 273 (450)
T PF01593_consen 226 IRLNTPVTRIERED--GGVTVT---TEDGET--IEADAVISAVPPSVLKNILLLP 273 (450)
T ss_dssp EESSEEEEEEEEES--SEEEEE---ETTSSE--EEESEEEE-S-HHHHHTSEEES
T ss_pred eecCCcceeccccc--cccccc---cccceE--EecceeeecCchhhhhhhhhcc
Confidence 99999999999765 466666 677874 8999999998776554424333
No 427
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.08 E-value=0.11 Score=41.92 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (426)
...+|+|||+|-+|-+++..|+..|.+ ++|+-|...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ 47 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE 47 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 457899999999999999999999987 999887543
No 428
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.06 E-value=0.069 Score=53.28 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=31.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|.|||+|..|...|..|+++|++|+|+|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3799999999999999999999999999999765
No 429
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.06 E-value=0.064 Score=50.40 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||+|..|..+|..|++.|++|.++++.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 699999999999999999999999999998653
No 430
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.03 E-value=0.057 Score=49.53 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=30.3
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||.|..|.++|..|.++|++|.++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998653
No 431
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.086 Score=46.84 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=33.7
Q ss_pred CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
||.+....|+|+|| |..|..+|..|.++|.+|+++.|.+
T Consensus 1 m~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 1 MMSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 66666678999986 8899999999999999999998764
No 432
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97 E-value=0.088 Score=51.79 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=35.7
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
||.....+|.|+|-|-+|++++..|+++|.+|++.|....
T Consensus 1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CcccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 7776667899999999999999999999999999997654
No 433
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.96 E-value=0.1 Score=43.65 Aligned_cols=36 Identities=31% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCCccEEEEcCCh-HHHHHHHHHHHcCCcEEEEcccC
Q 014324 4 KEKGKAVIVGGSI-AGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 4 ~~~~~V~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
....+|+|||+|- +|..+|..|.++|.+|+++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3567999999996 79999999999999999999864
No 434
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.85 E-value=0.091 Score=47.02 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+.+++|+|||+.+..+|..++..|++|+|+|.++..
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~ 135 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAE 135 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccc
Confidence 4579999999999999999999999999999987663
No 435
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.81 E-value=0.064 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=32.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 41 (426)
....|+|||+|-.|..+|..|++.|+ +++|+|...-.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 45789999999999999999999996 79999977653
No 436
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.75 E-value=0.088 Score=51.91 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=32.6
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
|......+|+|+|.|.+|.++|..|.+ |.+|+|+|..+.
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~ 39 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKA 39 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCC
Confidence 444455789999999999999999995 999999996543
No 437
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.75 E-value=0.094 Score=48.88 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=30.7
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
++|+|||+|..|.+.|..++..|+ +|+++|...+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999999655
No 438
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.74 E-value=0.1 Score=43.60 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=29.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|.|||-|-.|...|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 3799999999999999999999999999998764
No 439
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.73 E-value=0.74 Score=43.54 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR 174 (426)
Q Consensus 122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR 174 (426)
..+ ++-++++.+++...+ ..+.+++++...|+.++++.|.||.|+|-+-.+-
T Consensus 291 ~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred CCeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecccccCCc
Confidence 356 889999999985444 3388888888889999999999999999884433
No 440
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.12 Score=47.96 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=38.5
Q ss_pred CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
|-....+||+|+|.|+.=..++.+|+..|.+|+.||+++..+.
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 4445579999999999999999999999999999999998764
No 441
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.62 E-value=0.95 Score=44.94 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=20.2
Q ss_pred ccEEEEcCChHHHHHHHHHHHc
Q 014324 7 GKAVIVGGSIAGISCAHALLRA 28 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~ 28 (426)
.+|+|||+|..|+-+|..|.+.
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5799999999999999998876
No 442
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=93.54 E-value=8.4 Score=38.06 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324 111 DLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCL 170 (426)
Q Consensus 111 ~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~ 170 (426)
.|-+.|.+.+..+.|+++++|..|..+++ .++|+ ..+|++ ++||.||.|.-..
T Consensus 226 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~--~~~v~---~~~g~~--~~ad~VI~t~P~~ 278 (462)
T TIGR00562 226 TLPEEIEKRLKLTKVYKGTKVTKLSHRGS--NYTLE---LDNGVT--VETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHHhccCeEEcCCeEEEEEecCC--cEEEE---ECCCcE--EEcCEEEECCCHH
Confidence 34445555554323999999999986443 46655 556754 8999999998654
No 443
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.48 E-value=0.084 Score=50.76 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
+|.|||.|-.|+.+|..++. |++|+++|+....
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 69999999999999988885 9999999998764
No 444
>PRK07233 hypothetical protein; Provisional
Probab=93.43 E-value=3.7 Score=40.08 Aligned_cols=55 Identities=18% Similarity=-0.023 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324 110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS 171 (426)
Q Consensus 110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S 171 (426)
..+.+.|.+.++ .|+ |+++++|.+++.+++ .+++. ..+++. +++|.||.|.....
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~---~~~~~~--~~ad~vI~a~p~~~ 254 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGV---EVDGEE--EDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEE---EeCCce--EECCEEEECCCHHH
Confidence 345566666665 366 999999999986443 34332 234544 88999999998753
No 445
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.41 E-value=0.051 Score=43.05 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=28.4
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
.+.+|.|||+|-+|.++|..|.+.|+.|.-+..++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 46799999999999999999999999987665443
No 446
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=93.38 E-value=0.61 Score=44.32 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
++.+|+|+|+|=+|.++...|-..-++|+|+..+...
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF 90 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF 90 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence 4578999999999999988888888999999887763
No 447
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.30 E-value=0.14 Score=47.63 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=31.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
.+.+|+|||+|-+|.++|+.|...|+ +++++|....
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 45799999999999999999999886 6999998775
No 448
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.28 E-value=0.11 Score=45.80 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.6
Q ss_pred cEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.||| +|..|.++|..|++.|++|.++++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 699997 799999999999999999999977654
No 449
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.11 Score=51.79 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=30.8
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
..+|+|+|.|++|++++..|.++|.+|++.|+.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3579999999999999999999999999999653
No 450
>PRK08264 short chain dehydrogenase; Validated
Probab=93.22 E-value=0.15 Score=45.30 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=34.9
Q ss_pred CCCCCCccEEEEcC-ChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
||.+....|+|.|| |-.|..+|..|.++|. +|+++.|...
T Consensus 1 ~~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 1 MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence 67767778999996 8999999999999999 9999988754
No 451
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.18 E-value=0.17 Score=43.85 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
....|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4468999999999999999999999999998865
No 452
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.09 E-value=0.14 Score=47.27 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
...+|+|+|.|.+|..+|..|++.|.+|+++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 356899999999999999999999999999998854
No 453
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.09 E-value=0.14 Score=46.14 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=34.1
Q ss_pred CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
||......|+|.|| |-.|..+|..|+++|++|+++++...
T Consensus 1 ~~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 41 (257)
T PRK07067 1 MMRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA 41 (257)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 67666678999997 78899999999999999999987654
No 454
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.08 E-value=0.13 Score=50.34 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=31.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||-|.+|.++|..|.++|++|+++|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5799999999999999999999999999997654
No 455
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.06 E-value=0.1 Score=51.88 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=32.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+|.|||+|..|...|..|+++|++|+++|+.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999998763
No 456
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.05 E-value=0.15 Score=48.11 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=32.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
...+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45689999999999999999999998 8999999874
No 457
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.03 E-value=0.17 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+.+|+|||+|-.|..+|..|++.|+ +++++|...-
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 46789999999999999999999998 7999998764
No 458
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.99 E-value=3.3 Score=40.08 Aligned_cols=28 Identities=43% Similarity=0.577 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324 16 IAGISCAHALLRAGWDVVVLEKAGGPPT 43 (426)
Q Consensus 16 ~aGl~~A~~L~~~G~~v~v~E~~~~~~~ 43 (426)
+|||+||+.|+++|++|+|||++..++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 5899999999999999999999999875
No 459
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.97 E-value=0.13 Score=50.79 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=32.0
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|+|+|++|+.++..+...|.+|+++|++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998764
No 460
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.95 E-value=0.14 Score=50.70 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|+|.|.+|+++|..|.+.|++|++.|+.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4799999999999999999999999999998764
No 461
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.94 E-value=0.12 Score=50.86 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=30.6
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 41 (426)
++|+|||+|-.|+.+|..|+++| ++|+.+|..+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 36999999999999999999984 789999987653
No 462
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.17 Score=45.28 Aligned_cols=39 Identities=31% Similarity=0.389 Sum_probs=34.3
Q ss_pred CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
|+.++...|+|.|| |-.|..+|..|.++|.+|++++|..
T Consensus 1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 66666678999998 8999999999999999999998764
No 463
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.90 E-value=0.13 Score=49.32 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=32.2
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
...|+|+|.|+.|..+|..|+..|.+|+++|..+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 45899999999999999999999999999998774
No 464
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=0.14 Score=50.68 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=31.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|+|.|-+|.++|..|.++|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 45799999999999999999999999999997654
No 465
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.87 E-value=0.15 Score=47.52 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~ 41 (426)
+|+|||+|-+|.++|..|+..|. +++++|+....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 69999999999999999999994 79999997763
No 466
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.80 E-value=0.13 Score=48.80 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.6
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.|+|+|+||.||.++..++..|. +|+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 69999999999999888888896 5666676655
No 467
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.76 E-value=0.18 Score=47.17 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~ 41 (426)
.+.+|+|||||-.|.++|..|+..| .+++++|.....
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV 41 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence 4579999999999999999999999 589999987653
No 468
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.70 E-value=0.16 Score=50.37 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=31.5
Q ss_pred CccEEEEcCChHHHH-HHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGIS-CAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~-~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|||.|-+|++ +|..|.++|++|.+.|.+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 357999999999999 69999999999999998654
No 469
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.54 E-value=0.67 Score=47.22 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=28.1
Q ss_pred CccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~ 40 (426)
..+|+|||+|..|+-+|..+.+.| .+|+|+.+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~ 302 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTR 302 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCc
Confidence 357999999999999888888888 56777777654
No 470
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.44 E-value=0.15 Score=50.44 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=31.0
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998665
No 471
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.36 E-value=0.16 Score=47.07 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=29.3
Q ss_pred EEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 9 AVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 9 V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
|.|||+|-.|..+|..|+.+|+ +|+++|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6899999999999999999887 9999999864
No 472
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.36 E-value=0.15 Score=47.01 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=30.5
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 489999999999999999999999999998764
No 473
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.35 E-value=0.19 Score=50.31 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
...+|.|+|.|-+|+++|..|.++|++|.+.|....
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 41 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREA 41 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCC
Confidence 345799999999999999999999999999997653
No 474
>PLN02602 lactate dehydrogenase
Probab=92.32 E-value=0.24 Score=46.76 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=30.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
.+|+|||+|-.|.++|+.|...|+ +++++|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 699999999999999999998886 6999999765
No 475
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.24 E-value=0.23 Score=44.30 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP 41 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 41 (426)
...+|+|||+|-.|..+|..|++.|+ +++++|...-.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 35789999999999999999999997 68888877653
No 476
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.23 E-value=0.22 Score=46.95 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=32.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+.+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 45789999999999999999999999 8999999653
No 477
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.19 E-value=0.23 Score=44.49 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=32.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+.+|+|||+|..|..+|..|++.|+ +++|+|...-
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 35789999999999999999999997 7999988764
No 478
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.12 E-value=0.23 Score=45.56 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=30.5
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (426)
..+|+|+|+|-+|.++|..|++.|+ +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3579999999999999999999998 799998864
No 479
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.11 E-value=0.36 Score=35.30 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcc
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEK 37 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~ 37 (426)
...+|+|+|+|-+|..+|..|.+. +.++.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 356899999999999999999998 678999998
No 480
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.09 E-value=0.25 Score=41.65 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=30.1
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
+|+|||+|-.|...|..|++.|+ +++++|...-
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 58999999999999999999998 4999998764
No 481
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.06 E-value=0.24 Score=47.96 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
....|+|+|.|..|..+|..|+..|.+|+++|+.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 345799999999999999999999999999998765
No 482
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.04 E-value=0.26 Score=43.56 Aligned_cols=36 Identities=44% Similarity=0.568 Sum_probs=31.9
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCc---EEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWD---VVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 40 (426)
...+|+|+|+|-+|...|..|.+.|.+ +.|++|...
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 456899999999999999999999985 999999854
No 483
>PLN02487 zeta-carotene desaturase
Probab=92.03 E-value=7.8 Score=39.43 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=31.3
Q ss_pred cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc
Q 014324 308 WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG 347 (426)
Q Consensus 308 ~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~ 347 (426)
..+++|+||--.+-.| ..|+-|++++...|+.|.+..
T Consensus 517 ~~nl~LAGD~t~~~yP---at~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 517 ISNFFLAGSYTKQDYI---DSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCCEEEeCcccccCCc---chHHHHHHHHHHHHHHHHHHh
Confidence 4899999999888777 499999999999999887653
No 484
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=3.6 Score=38.14 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=32.3
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+|+|||||.+..-.|+.|++.+-+|+++=|+...
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ 178 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF 178 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence 49999999999999999999999999999888775
No 485
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.97 E-value=0.29 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP 41 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~ 41 (426)
+|+|||+|-.|...|..|++.|+ +++++|...-.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 58999999999999999999998 69999988753
No 486
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.96 E-value=0.28 Score=42.88 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=32.2
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 40 (426)
...+|+|||+|-.|...|..|++.|+. ++++|...-
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 457899999999999999999999985 999998764
No 487
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.90 E-value=0.24 Score=45.51 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
..+|+|+|.|-.|.++|..|+..|.+|++++|...
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998754
No 488
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.85 E-value=0.19 Score=52.47 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=32.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
.+|+|||||..|...|..++++|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998876
No 489
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.84 E-value=0.16 Score=51.58 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=31.9
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
-.|+|+|+|..|-.+|..|.++|++|+++|++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4689999999999999999999999999999876
No 490
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.83 E-value=0.23 Score=46.03 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
++|.|||.|..|..+|..|++.|++|.++++.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~ 36 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 36 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 3799999999999999999999999999988754
No 491
>PRK13984 putative oxidoreductase; Provisional
Probab=91.79 E-value=1 Score=46.27 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=25.0
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCC------cEEEEc
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGW------DVVVLE 36 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~------~v~v~E 36 (426)
.+|+|||||..|+-+|..|++.|. +|+|+.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 589999999999999999998753 566653
No 492
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.78 E-value=0.2 Score=52.26 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=32.4
Q ss_pred ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 41 (426)
.+|.|||||..|...|..++++|++|+++|.+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 46999999999999999999999999999998763
No 493
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.77 E-value=0.33 Score=41.80 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEccc
Q 014324 5 EKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKA 38 (426)
Q Consensus 5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~ 38 (426)
...+|+|+|| |..|..+|..|++.|.+|+++.|.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468999997 999999999999999999999765
No 494
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.76 E-value=0.24 Score=47.03 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=31.5
Q ss_pred ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324 7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG 40 (426)
Q Consensus 7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~ 40 (426)
.+|+|||+|-.|.+.|..|+++| .+|+|-+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 37999999999999999999999 89999999954
No 495
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.68 E-value=0.24 Score=49.22 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=30.9
Q ss_pred CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
..+|+|+|.|-+|+++|..|.+.|.+|++.|+..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 3579999999999999999999999999999754
No 496
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.62 E-value=0.27 Score=45.61 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=29.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~ 40 (426)
+|.|||+|-.|.++|+.|..+|+ +++++|....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999886 6999998665
No 497
>PLN02256 arogenate dehydrogenase
Probab=91.59 E-value=0.29 Score=45.36 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324 4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG 39 (426)
Q Consensus 4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (426)
+...+|.|||.|-.|-+.|..|.+.|.+|.++++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 345689999999999999999999999999998764
No 498
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.59 E-value=0.28 Score=45.80 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=31.8
Q ss_pred CCccEEEEcC-ChHHHHHHHHHHHcCC-------cEEEEcccCC
Q 014324 5 EKGKAVIVGG-SIAGISCAHALLRAGW-------DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~-------~v~v~E~~~~ 40 (426)
+.++|.|||+ |..|.++|+.|...|+ +++++|....
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~ 45 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPA 45 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCc
Confidence 5689999998 9999999999998886 7999998753
No 499
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.58 E-value=0.3 Score=43.28 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324 5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG 40 (426)
Q Consensus 5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 40 (426)
.+.+|+|||+|-.|...|..|++.|+ +++|+|...-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 45789999999999999999999998 7888887764
No 500
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.57 E-value=0.22 Score=46.21 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.7
Q ss_pred cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324 8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40 (426)
Q Consensus 8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (426)
+|.|||.|-.|..+|..|.++|++|.++++.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999988764
Done!