Query 014325
Match_columns 426
No_of_seqs 279 out of 1909
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 5.4E-52 1.2E-56 424.4 24.9 295 43-397 2-314 (434)
2 PF10409 PTEN_C2: C2 domain of 99.9 2.7E-24 5.8E-29 188.8 13.1 121 250-399 8-134 (134)
3 KOG1720 Protein tyrosine phosp 99.9 6.3E-22 1.4E-26 181.5 13.7 149 53-210 50-207 (225)
4 PTZ00242 protein tyrosine phos 99.9 3.3E-21 7.1E-26 175.5 16.2 146 53-212 8-159 (166)
5 PTZ00393 protein tyrosine phos 99.8 2.5E-19 5.5E-24 169.6 14.6 135 62-212 93-230 (241)
6 smart00195 DSPc Dual specifici 99.6 4.2E-15 9E-20 130.5 15.1 133 57-209 2-137 (138)
7 cd00127 DSPc Dual specificity 99.6 2.2E-14 4.8E-19 125.4 14.0 134 56-207 2-138 (139)
8 PF05706 CDKN3: Cyclin-depende 99.5 3.8E-14 8.2E-19 127.4 8.8 127 50-181 23-168 (168)
9 PF00782 DSPc: Dual specificit 99.5 6.8E-14 1.5E-18 121.8 10.1 111 94-209 18-132 (133)
10 KOG2836 Protein tyrosine phosp 99.5 4.1E-13 8.9E-18 115.4 14.0 139 56-208 12-153 (173)
11 smart00012 PTPc_DSPc Protein t 99.5 4E-14 8.6E-19 117.0 7.2 90 115-207 4-102 (105)
12 smart00404 PTPc_motif Protein 99.5 4E-14 8.6E-19 117.0 7.2 90 115-207 4-102 (105)
13 PRK12361 hypothetical protein; 99.5 5.8E-13 1.3E-17 142.7 16.2 138 55-210 94-236 (547)
14 COG2453 CDC14 Predicted protei 99.5 3.1E-13 6.7E-18 124.7 12.0 93 115-212 74-168 (180)
15 KOG1719 Dual specificity phosp 99.4 1.5E-12 3.3E-17 114.5 9.8 92 116-212 78-172 (183)
16 KOG0790 Protein tyrosine phosp 99.4 5.3E-13 1.1E-17 134.0 5.8 91 116-206 417-515 (600)
17 PHA02740 protein tyrosine phos 99.3 4.9E-12 1.1E-16 125.6 9.7 88 116-206 181-282 (298)
18 cd00047 PTPc Protein tyrosine 99.3 5.4E-12 1.2E-16 120.3 9.0 89 116-207 133-228 (231)
19 smart00194 PTPc Protein tyrosi 99.3 7.2E-12 1.6E-16 121.5 8.9 87 116-206 161-254 (258)
20 PRK15375 pathogenicity island 99.2 2.9E-11 6.3E-16 125.0 10.5 94 116-211 426-529 (535)
21 PHA02742 protein tyrosine phos 99.2 1.8E-11 3.8E-16 122.0 8.1 88 116-206 186-290 (303)
22 KOG0792 Protein tyrosine phosp 99.2 7.8E-12 1.7E-16 136.6 5.8 96 116-212 1031-1131(1144)
23 PHA02747 protein tyrosine phos 99.2 3.6E-11 7.7E-16 120.3 8.4 86 116-204 187-288 (312)
24 PHA02746 protein tyrosine phos 99.2 4.3E-11 9.3E-16 120.2 7.9 88 116-206 205-308 (323)
25 PHA02738 hypothetical protein; 99.2 7.9E-11 1.7E-15 118.1 8.6 88 116-206 182-288 (320)
26 KOG0791 Protein tyrosine phosp 99.1 1.1E-10 2.5E-15 115.7 7.7 98 115-213 254-356 (374)
27 PF00102 Y_phosphatase: Protei 99.1 2.3E-10 5E-15 108.1 9.4 88 116-207 138-232 (235)
28 KOG1718 Dual specificity phosp 99.0 1.3E-08 2.9E-13 91.1 13.5 120 55-191 16-138 (198)
29 COG5599 PTP2 Protein tyrosine 99.0 4.4E-10 9.6E-15 107.1 4.2 93 116-211 188-293 (302)
30 KOG1717 Dual specificity phosp 98.9 1E-08 2.2E-13 97.8 9.9 95 94-191 197-295 (343)
31 KOG1716 Dual specificity phosp 98.8 7.8E-08 1.7E-12 95.1 15.1 141 54-213 73-218 (285)
32 KOG4228 Protein tyrosine phosp 98.8 3.6E-09 7.8E-14 117.1 3.3 118 88-206 669-791 (1087)
33 PF03162 Y_phosphatase2: Tyros 98.7 9.4E-08 2E-12 87.0 8.9 137 54-211 5-150 (164)
34 KOG0789 Protein tyrosine phosp 98.6 4.1E-08 8.9E-13 101.3 6.5 89 116-208 267-363 (415)
35 TIGR01244 conserved hypothetic 98.6 1.1E-06 2.3E-11 77.5 12.9 114 56-189 2-126 (135)
36 KOG0793 Protein tyrosine phosp 98.3 9.8E-07 2.1E-11 93.5 7.0 86 116-205 895-988 (1004)
37 KOG2386 mRNA capping enzyme, g 98.2 3.5E-06 7.6E-11 85.7 8.2 128 62-189 25-166 (393)
38 PF14566 PTPlike_phytase: Inos 98.1 6.5E-06 1.4E-10 73.7 6.3 54 116-172 95-148 (149)
39 KOG4228 Protein tyrosine phosp 98.0 3.8E-06 8.3E-11 93.7 4.9 92 116-207 984-1080(1087)
40 PLN02727 NAD kinase 98.0 2.8E-05 6E-10 86.1 10.3 85 82-173 272-366 (986)
41 PF13350 Y_phosphatase3: Tyros 98.0 1.8E-05 3.9E-10 71.7 6.8 44 141-185 118-161 (164)
42 KOG1572 Predicted protein tyro 97.7 0.00027 5.9E-09 67.1 9.6 122 53-188 57-188 (249)
43 PF04273 DUF442: Putative phos 97.5 0.00085 1.8E-08 57.1 9.6 94 55-168 1-105 (110)
44 COG2365 Protein tyrosine/serin 97.4 0.00037 8E-09 67.7 6.7 38 148-185 136-173 (249)
45 PF14671 DSPn: Dual specificit 96.9 0.0019 4.1E-08 57.3 5.6 66 122-187 39-110 (141)
46 COG5350 Predicted protein tyro 96.7 0.0042 9.1E-08 55.4 6.6 85 119-212 65-153 (172)
47 PRK01415 hypothetical protein; 91.1 1.2 2.6E-05 43.3 8.8 103 58-175 91-196 (247)
48 cd01518 RHOD_YceA Member of th 90.7 1.2 2.7E-05 36.2 7.4 80 82-175 7-86 (101)
49 COG3453 Uncharacterized protei 90.2 1.7 3.6E-05 37.5 7.7 110 54-183 1-121 (130)
50 PRK00142 putative rhodanese-re 88.8 4.1 9E-05 41.0 10.9 105 57-175 89-196 (314)
51 cd01448 TST_Repeat_1 Thiosulfa 88.5 3.5 7.5E-05 34.7 8.8 85 82-175 5-105 (122)
52 KOG4471 Phosphatidylinositol 3 88.2 0.87 1.9E-05 48.8 5.6 24 147-170 373-396 (717)
53 PF04179 Init_tRNA_PT: Initiat 83.8 4.7 0.0001 42.6 8.5 129 34-172 261-400 (451)
54 PRK05320 rhodanese superfamily 83.5 4.9 0.00011 39.2 8.0 106 59-175 90-200 (257)
55 PF06602 Myotub-related: Myotu 81.1 3.2 6.9E-05 42.5 5.9 26 147-172 230-255 (353)
56 cd01522 RHOD_1 Member of the R 77.4 8.2 0.00018 32.5 6.5 85 82-175 4-89 (117)
57 PF00581 Rhodanese: Rhodanese- 77.3 7.8 0.00017 31.4 6.2 80 82-168 3-86 (113)
58 PLN02160 thiosulfate sulfurtra 75.8 6 0.00013 34.6 5.3 82 82-175 20-106 (136)
59 cd01533 4RHOD_Repeat_2 Member 75.1 20 0.00044 29.4 8.2 78 81-175 14-91 (109)
60 cd01519 RHOD_HSP67B2 Member of 72.1 13 0.00029 30.1 6.3 85 82-175 4-91 (106)
61 cd01523 RHOD_Lact_B Member of 71.8 20 0.00043 28.9 7.2 83 82-175 4-86 (100)
62 COG1054 Predicted sulfurtransf 71.2 9.5 0.00021 38.0 5.9 102 59-175 92-197 (308)
63 cd01443 Cdc25_Acr2p Cdc25 enzy 70.2 43 0.00093 27.7 9.1 73 82-164 7-82 (113)
64 cd01529 4RHOD_Repeats Member o 69.0 17 0.00038 29.0 6.2 78 86-175 4-81 (96)
65 cd01528 RHOD_2 Member of the R 67.7 25 0.00054 28.4 7.0 79 82-175 5-83 (101)
66 cd01525 RHOD_Kc Member of the 62.2 16 0.00034 29.6 4.8 85 82-175 4-90 (105)
67 TIGR03865 PQQ_CXXCW PQQ-depend 60.6 92 0.002 28.0 9.9 29 146-175 114-142 (162)
68 cd01530 Cdc25 Cdc25 phosphatas 60.2 39 0.00085 28.7 7.1 79 82-170 7-89 (121)
69 KOG1089 Myotubularin-related p 56.0 19 0.00041 39.1 5.2 21 148-168 344-364 (573)
70 smart00450 RHOD Rhodanese Homo 54.8 39 0.00085 26.1 5.9 77 94-175 3-81 (100)
71 cd01531 Acr2p Eukaryotic arsen 48.2 1.5E+02 0.0033 24.3 9.3 73 81-164 6-78 (113)
72 cd01520 RHOD_YbbB Member of th 46.5 1.1E+02 0.0024 25.9 7.7 36 82-122 4-39 (128)
73 cd01526 RHOD_ThiF Member of th 46.5 1.2E+02 0.0026 25.4 7.9 80 82-175 13-97 (122)
74 cd00158 RHOD Rhodanese Homolog 45.7 32 0.0007 26.2 3.9 67 93-174 8-74 (89)
75 PRK05600 thiamine biosynthesis 41.9 70 0.0015 32.9 6.7 82 80-175 274-357 (370)
76 PRK00162 glpE thiosulfate sulf 39.6 1.6E+02 0.0035 23.9 7.5 74 82-175 10-83 (108)
77 PRK07411 hypothetical protein; 33.9 91 0.002 32.3 6.1 82 81-175 286-367 (390)
78 smart00400 ZnF_CHCC zinc finge 32.8 46 0.001 24.2 2.7 32 152-184 23-54 (55)
79 cd01444 GlpE_ST GlpE sulfurtra 32.2 2.4E+02 0.0052 21.9 7.5 27 147-175 55-81 (96)
80 cd01449 TST_Repeat_2 Thiosulfa 30.5 1.6E+02 0.0034 24.1 6.0 27 147-175 77-103 (118)
81 cd01534 4RHOD_Repeat_3 Member 30.3 2.7E+02 0.0059 21.9 7.3 78 82-175 4-81 (95)
82 cd01535 4RHOD_Repeat_4 Member 30.2 1.5E+02 0.0032 26.1 6.0 64 95-175 11-74 (145)
83 cd01524 RHOD_Pyr_redox Member 30.0 2.7E+02 0.0058 21.7 7.2 26 147-174 50-75 (90)
84 PLN02723 3-mercaptopyruvate su 28.9 2.6E+02 0.0057 27.9 8.3 86 81-175 194-294 (320)
85 COG0607 PspE Rhodanese-related 28.5 2E+02 0.0044 22.9 6.3 27 147-175 60-86 (110)
86 cd01532 4RHOD_Repeat_1 Member 26.9 96 0.0021 24.5 3.9 28 148-175 50-77 (92)
87 PF01807 zf-CHC2: CHC2 zinc fi 23.8 1E+02 0.0022 25.3 3.5 36 152-188 54-89 (97)
88 PF03668 ATP_bind_2: P-loop AT 22.1 1.5E+02 0.0032 29.5 4.9 17 150-166 244-260 (284)
89 PRK09629 bifunctional thiosulf 21.0 5.8E+02 0.013 28.2 9.7 86 81-175 151-248 (610)
90 cd01521 RHOD_PspE2 Member of t 20.8 1.4E+02 0.0031 24.3 4.0 79 82-175 13-91 (110)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.4e-52 Score=424.36 Aligned_cols=295 Identities=40% Similarity=0.666 Sum_probs=234.9
Q ss_pred CceeeeecCcccceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecC
Q 014325 43 KRRRMLVEGYDLDMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFD 122 (426)
Q Consensus 43 ~~~r~~~~g~~LDltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~p 122 (426)
+++|+++.|+|||++|||+|||||+||+++.++.|||++++|+.||+++|+++|.|||||+|+.|+.+.|+++|..++|+
T Consensus 2 ~k~r~~~~~~DLDltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~ 81 (434)
T KOG2283|consen 2 KKRRYNEGGFDLDLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFD 81 (434)
T ss_pred ccchhhhccccccceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCC
Confidence 57899999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCC--CCCCCc
Q 014325 123 DNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM--SAEEALQLYAHKRTTNN--EGVSIP 198 (426)
Q Consensus 123 D~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~--s~~eAl~~~~~~R~~~~--~~v~~P 198 (426)
||++|+++.|..||+.|++||+++++|+|+|||+||+||||+||||||+++++ ++++|+++|.++|+... .++++|
T Consensus 82 Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~P 161 (434)
T KOG2283|consen 82 DHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIP 161 (434)
T ss_pred CCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCc
Confidence 99999999999999999999999999999999999999999999999999988 79999999999996655 589999
Q ss_pred hHhHHHHHHHHHh-cCCCCCCCCCCCcCCCcccccceeEEEEeecccCceeEEEEEEeeecccccccccccccCCcceee
Q 014325 199 SQRRYVGYWNNII-SFPRGVHSGTPDVNLPKRCSRELLRVRLYDTINTDAVFFVVSELQEVTGQLHRPAMELSRSSCRPV 277 (426)
Q Consensus 199 SQ~ryl~yf~~ll-~~~~~~~~~~~~~~~p~~~~~~l~~i~l~~~~~~~~~~~~~~~~~~ip~~~~~P~~~~~~~gcrp~ 277 (426)
||+|||+||+.+| .+. ..|+.+ ..+++++..+++.||+ ++..+++|+|+
T Consensus 162 Sq~RYv~Y~~~~l~~~~----------~~~~~~--------------~~~~f~~~~~~~~ip~------~~~~~~~~~~~ 211 (434)
T KOG2283|consen 162 SQRRYVGYFSRVLLNGP----------LPPRSN--------------SCPLFLHSFILISIPN------FNSSRDGCRPA 211 (434)
T ss_pred hhhHHHHHHHHHhhcCC----------cCcccc--------------cCceEeeeeeeeecCc------ccccCCCCCcc
Confidence 9999999999954 321 112221 1135677777888864 35678999999
Q ss_pred eecccCCCCceeEeeccccccccccccCCCCeEEEeccCccceeecccccccccCCCCeeeCCEEEEEEEccC-------
Q 014325 278 KKGNQRNTNHKYYVSCIEDEEEGSKLESEEPRVVVQMDTENSIIYQKTCLDHYFDKPLQVSGDVRVIFYQKMI------- 350 (426)
Q Consensus 278 ~~v~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GDV~i~~~h~~~------- 350 (426)
++||++.+. +|.+.... .+..+ +.+ .| +.++.++.++ +.|||+..
T Consensus 212 ~~v~~~k~~--~~~~~s~~--~~~~~---------~~~---------g~--~~i~~~~~~~----~~~~~~~~~~~~~~~ 263 (434)
T KOG2283|consen 212 FPVYQGKKK--VYSFSSDG--IMRLG---------ELD---------GK--IVIPLGLRVD----VKCYHKRTSSGNRGI 263 (434)
T ss_pred ceeeeccee--eEEeccCC--ccccc---------ccc---------cc--eecccccccc----eEEEeeccccCCcce
Confidence 999998863 34333222 11111 111 11 1223445555 88998631
Q ss_pred ----CceeEEEEEeccccc--CCeEEEccCCcccCCCCCCCccCCCeEEEEEE
Q 014325 351 ----GSRFFYACFNTAFIR--NSMLQFSIRDLDKVGSRGRSICGPSFCLELLF 397 (426)
Q Consensus 351 ----~~~mF~~~FhT~FI~--~~~L~l~k~eLD~~~~d~~~~f~~~F~vel~F 397 (426)
....|+++|+|+++. ...+.+.+.+++...+. ..++.-|.+.+.-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~ 314 (434)
T KOG2283|consen 264 LKDKEFKGCQIQFYTGPFPEDETVVRFFQADLPIYVSN--EFVFNFFQVSLEV 314 (434)
T ss_pred eeccccceEEEeccCCCccccceeeecccccCCccccc--cccccccceeeec
Confidence 134799999999996 45666777777765443 2355556565544
No 2
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.91 E-value=2.7e-24 Score=188.80 Aligned_cols=121 Identities=26% Similarity=0.413 Sum_probs=83.6
Q ss_pred EEEEEeeecccccccccccccCCcceeeeecccCCCCceeEeeccccccccccccCCCCeEEEeccCccceeeccccccc
Q 014325 250 FVVSELQEVTGQLHRPAMELSRSSCRPVKKGNQRNTNHKYYVSCIEDEEEGSKLESEEPRVVVQMDTENSIIYQKTCLDH 329 (426)
Q Consensus 250 ~~~~~~~~ip~~~~~P~~~~~~~gcrp~~~v~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
|...+++++|+ | ..++||+||++||+++.. ++ ++...++....+ ....+.+
T Consensus 8 L~~I~l~~iP~------f-~~~~gc~p~i~I~~~~~~--v~-~~~~~~~~~~~~-------------------~~~~~~~ 58 (134)
T PF10409_consen 8 LKSIILHGIPN------F-NSGGGCRPYIEIYNGGKK--VF-STSKSYEDPKSY-------------------EQDSVII 58 (134)
T ss_dssp EEEEEEES-TT------S-TTSSCCTEEEEEEETTEE--EE-ETCCTCCCCCEE-------------------ETTCEEE
T ss_pred EEEEEEECCCc------c-CCCCCEEEEEEEECCCcc--EE-Eeccceeccccc-------------------cceeEEE
Confidence 33444566764 3 346799999999998752 22 222222211111 0111223
Q ss_pred ccCCCCeeeCCEEEEEEEcc----CCceeEEEEEeccccc--CCeEEEccCCcccCCCCCCCccCCCeEEEEEEcC
Q 014325 330 YFDKPLQVSGDVRVIFYQKM----IGSRFFYACFNTAFIR--NSMLQFSIRDLDKVGSRGRSICGPSFCLELLFGP 399 (426)
Q Consensus 330 ~~~~~~~v~GDV~i~~~h~~----~~~~mF~~~FhT~FI~--~~~L~l~k~eLD~~~~d~~~~f~~~F~vel~F~~ 399 (426)
.++.+++|+|||+|+|||+. .+++|||+||||+||. ++.|+|+|+|||.+++|.++.||++|+|||+|++
T Consensus 59 ~~~~~~~l~GDV~i~~~~~~~~~~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 59 ELPKNLPLRGDVLIKFYHKRSSSMSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp EEEEEEEEESEEEEEEEECETTECCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred EeCCCCeEeCCEEEEEEeCCCcccccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 44567889999999999964 4578999999999999 9999999999999998744569999999999974
No 3
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.87 E-value=6.3e-22 Score=181.51 Aligned_cols=149 Identities=23% Similarity=0.357 Sum_probs=126.2
Q ss_pred ccceeEEec-CEEEecCCCcc---chhhhc-CCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccc--cc-eEEeecCCC
Q 014325 53 DLDMSYITD-RLLAMSFPAEH---MRAVYR-NPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFY--SR-VERYPFDDN 124 (426)
Q Consensus 53 ~LDltyIT~-rIiam~~P~~~---~e~~yr-n~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~--~~-v~~~p~pD~ 124 (426)
+.|++||++ |+++...|... .+..|- +..+.+..+++ +..--.++.| +++.|+++.|. |. .++++++|+
T Consensus 50 ~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~--~~~v~s~vrl-n~~~yd~~~f~~~Gi~h~~l~f~Dg 126 (225)
T KOG1720|consen 50 NGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFK--NNNVTSIVRL-NKRLYDAKRFTDAGIDHHDLFFADG 126 (225)
T ss_pred CCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhh--hcccceEEEc-CCCCCChHHhcccCceeeeeecCCC
Confidence 489999998 69999888654 345554 44566777776 4444578888 78999998886 34 778999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHc-CCCHHHHHHHHHHhcCCCCCCCCCchHhHH
Q 014325 125 HVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYT-GMSAEEALQLYAHKRTTNNEGVSIPSQRRY 203 (426)
Q Consensus 125 ~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~-g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ry 203 (426)
.+|+++.+.+|++.++..++ .+.|+|||+||.|||||+|||||||. |+++.||+++++..| +++|.+|.|..+
T Consensus 127 ~tP~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~R---pG~V~gpqQ~~l 200 (225)
T KOG1720|consen 127 STPTDAIVKEFVKIVENAEK---GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICR---PGAVIGPQQHKL 200 (225)
T ss_pred CCCCHHHHHHHHHHHHHHHh---cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC---CccccCHHHHHH
Confidence 99999999999999999886 47899999999999999999999985 999999999999999 578999999999
Q ss_pred HHHHHHH
Q 014325 204 VGYWNNI 210 (426)
Q Consensus 204 l~yf~~l 210 (426)
++-|..+
T Consensus 201 ~~~q~~~ 207 (225)
T KOG1720|consen 201 LHKQRDL 207 (225)
T ss_pred HHHHHHH
Confidence 9998885
No 4
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.87 E-value=3.3e-21 Score=175.49 Aligned_cols=146 Identities=23% Similarity=0.407 Sum_probs=117.4
Q ss_pred ccceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccc--cc-eEEeecCCCCCCCH
Q 014325 53 DLDMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFY--SR-VERYPFDDNHVPPL 129 (426)
Q Consensus 53 ~LDltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~--~~-v~~~p~pD~~~P~l 129 (426)
|-.++|+|.|+++|.-|.+..-. +++ +.|+ ..+...|+|+| +..|++..+. +. +.++||+|+.+|+.
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~------~~l-~~L~--~~gI~~Iv~l~-~~~~~~~~~~~~gi~~~~~p~~D~~~P~~ 77 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLP------LYI-KELQ--RYNVTHLVRVC-GPTYDAELLEKNGIEVHDWPFDDGAPPPK 77 (166)
T ss_pred CcceeeeceEEEEecCCCcccHH------HHH-HHHH--hCCCeEEEecC-CCCCCHHHHHHCCCEEEecCCCCCCCCCH
Confidence 34689999999999999986322 122 3332 33667899995 5667765543 43 88899999999999
Q ss_pred HHHHHHHHHHHHhhcc--CCCCeEEEEcCCCCchhHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCCCCCCCchHhHHHHH
Q 014325 130 EMIKLLCESVHSWLSS--DPKNIAVIHCMAGKGRTGLMVCSYLVYTG-MSAEEALQLYAHKRTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 130 ~~l~~~~~~i~~~L~~--~~~~~VvVHC~aG~GRTGtviaayLl~~g-~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~y 206 (426)
+.+.++++.+++.+.. .++++|+|||.||+||||+++||||+..+ +++++|+++++++|+ .++ ++.|++||..
T Consensus 78 ~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~---~~i-~~~Q~~~l~~ 153 (166)
T PTZ00242 78 AVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRK---GAI-NQTQLQFLKK 153 (166)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC---CCc-hHHHHHHHHH
Confidence 9888999888888755 45789999999999999999999999865 899999999999995 345 6899999999
Q ss_pred HHHHhc
Q 014325 207 WNNIIS 212 (426)
Q Consensus 207 f~~ll~ 212 (426)
|...++
T Consensus 154 ~~~~~~ 159 (166)
T PTZ00242 154 YKPRKK 159 (166)
T ss_pred HHHHhc
Confidence 998765
No 5
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.81 E-value=2.5e-19 Score=169.58 Aligned_cols=135 Identities=18% Similarity=0.392 Sum_probs=109.3
Q ss_pred CEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccc--cc-eEEeecCCCCCCCHHHHHHHHHH
Q 014325 62 RLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFY--SR-VERYPFDDNHVPPLEMIKLLCES 138 (426)
Q Consensus 62 rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~--~~-v~~~p~pD~~~P~l~~l~~~~~~ 138 (426)
|++++.-|....-..| + ..|+ .-+...|+++| |+.|+...+. |. ++++||||+.+|+.+.+.++++.
T Consensus 93 rfLi~~~P~~~~~~~y------l-~eLk--~~gV~~lVrlc-E~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~ 162 (241)
T PTZ00393 93 KILILDAPTNDLLPLY------I-KEMK--NYNVTDLVRTC-ERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTI 162 (241)
T ss_pred eEEEeCCCCHHHHHHH------H-HHHH--HcCCCEEEECC-CCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHH
Confidence 9999999987632211 1 2222 23445788895 6788876654 44 89999999999999999999999
Q ss_pred HHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHhc
Q 014325 139 VHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYWNNIIS 212 (426)
Q Consensus 139 i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf~~ll~ 212 (426)
+++.+. ++..|+|||+||+||||+++||||+..|+++++|+++++++|+ .++ ++.|++||..|.....
T Consensus 163 i~~~l~--~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RP---gAI-n~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 163 VNNVIK--NNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRK---GAI-NKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHhcc
Confidence 988875 3468999999999999999999999999999999999999995 345 6789999999998764
No 6
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.65 E-value=4.2e-15 Score=130.45 Aligned_cols=133 Identities=19% Similarity=0.160 Sum_probs=98.5
Q ss_pred eEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCccccc-ceEEeecCCCCCCC-HHHHHH
Q 014325 57 SYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYS-RVERYPFDDNHVPP-LEMIKL 134 (426)
Q Consensus 57 tyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~-~v~~~p~pD~~~P~-l~~l~~ 134 (426)
+-|++.|+.+++|.... + .+|.. .+-..|+||+.+.. ... ..+ .+.++|++|...++ .+.+..
T Consensus 2 ~~I~~~l~~G~~~~~~~-------~----~~l~~--~gi~~Vi~l~~~~~-~~~-~~~~~~~~ipi~D~~~~~~~~~~~~ 66 (138)
T smart00195 2 SEILPHLYLGSYSSALN-------L----ALLKK--LGITHVINVTNEVP-NLN-KKGFTYLGVPILDNTETKISPYFPE 66 (138)
T ss_pred cEEeCCeEECChhHcCC-------H----HHHHH--cCCCEEEEccCCCC-CCC-CCCCEEEEEECCCCCCCChHHHHHH
Confidence 46899999999997642 1 22222 25558999965433 211 123 38899999965444 456667
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH-cCCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHH
Q 014325 135 LCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY-TGMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYWNN 209 (426)
Q Consensus 135 ~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~-~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf~~ 209 (426)
+++.++..... +++|+|||.+|+||||++++||||+ .|+++++|+++++++|+ ....++.|++.|.-|++
T Consensus 67 ~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~---~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 67 AVEFIEDAEKK--GGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRP---IISPNFGFLRQLIEYER 137 (138)
T ss_pred HHHHHHHHhcC--CCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCC---ccCCCHhHHHHHHHHhh
Confidence 77777776643 4689999999999999999999997 68899999999999995 34467889998887764
No 7
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.59 E-value=2.2e-14 Score=125.43 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=97.5
Q ss_pred eeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCccccc-ceEEeecCCCCCCCHH-HHH
Q 014325 56 MSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYS-RVERYPFDDNHVPPLE-MIK 133 (426)
Q Consensus 56 ltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~-~v~~~p~pD~~~P~l~-~l~ 133 (426)
++.|++.|+++++|..... .+|. ..+--.|+||+.+..+......+ .+.++|+.|...++.. .+.
T Consensus 2 ~~~i~~~l~~g~~~~~~d~-----------~~L~--~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 68 (139)
T cd00127 2 LSEITPGLYLGSYPAASDK-----------ELLK--KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFD 68 (139)
T ss_pred cCEEcCCeEECChhHhcCH-----------HHHH--HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHH
Confidence 5789999999999986521 1222 23445799997555431222233 3889999998866554 566
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH-cCCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHH
Q 014325 134 LLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY-TGMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYW 207 (426)
Q Consensus 134 ~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~-~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf 207 (426)
.+++.+...... +++|+|||.+|.||||+++++||+. .++++++|+++++++|+. ....+.+++.|.-|
T Consensus 69 ~~~~~i~~~~~~--~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~---~~~~~~~~~~l~~~ 138 (139)
T cd00127 69 EAVDFIDDAREK--GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPI---ISPNAGFMRQLKEY 138 (139)
T ss_pred HHHHHHHHHHhc--CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCc---cCCCHHHHHHHHHh
Confidence 677777776654 3689999999999999999999996 577999999999999963 34566777766554
No 8
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.52 E-value=3.8e-14 Score=127.40 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=76.3
Q ss_pred cCcccceeEEe-------cCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCC---CCCCccc------c
Q 014325 50 EGYDLDMSYIT-------DRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEE---TYDPEHF------Y 113 (426)
Q Consensus 50 ~g~~LDltyIT-------~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~---~y~~~~~------~ 113 (426)
+...|.++|+. .++..+..|........|+.-.|+.+. ++.+.-.|+-|++.. .|....+ .
T Consensus 23 ~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~L---k~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~ 99 (168)
T PF05706_consen 23 EQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERL---KDWGAQDVVTLLTDHELARLGVPDLGEAAQAR 99 (168)
T ss_dssp BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHH---HHTT--EEEE-S-HHHHHHTT-TTHHHHHHHT
T ss_pred cCCceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHH---HHCCCCEEEEeCcHHHHHHcCCccHHHHHHHc
Confidence 33456777774 366777789877666667666677665 334555677786432 2432221 2
Q ss_pred cc-eEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcC--CCHHHHH
Q 014325 114 SR-VERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTG--MSAEEAL 181 (426)
Q Consensus 114 ~~-v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g--~s~~eAl 181 (426)
|. ++|+|+||..+|+.+...+++..+.++|+++ +.|+|||++|.||||+++||+|+..+ ++|++|+
T Consensus 100 Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g--~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 100 GIAWHHLPIPDGSAPDFAAAWQILEELAARLENG--RKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp T-EEEE----TTS---HHHHHHHHHHHHHHHHTT----EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 44 8899999999999988889999999999864 67999999999999999999999754 6999986
No 9
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.51 E-value=6.8e-14 Score=121.78 Aligned_cols=111 Identities=28% Similarity=0.322 Sum_probs=85.7
Q ss_pred CeEEEeeeccCCCCCC-ccccc-ceEEeecCC-CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHH
Q 014325 94 EHYKVYNLCIEETYDP-EHFYS-RVERYPFDD-NHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYL 170 (426)
Q Consensus 94 ~~y~V~NL~se~~y~~-~~~~~-~v~~~p~pD-~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayL 170 (426)
+.-.|+|++.+..... ....+ .++++|+.| ...|..+.+..+++.|+++..+ ++.|+|||.+|+||||+++||||
T Consensus 18 ~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL 95 (133)
T PF00782_consen 18 GITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISE--GGKVLVHCKAGLSRSGAVAAAYL 95 (133)
T ss_dssp TEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHT--TSEEEEEESSSSSHHHHHHHHHH
T ss_pred CCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcc--cceeEEEeCCCcccchHHHHHHH
Confidence 5557999965433211 11122 388899999 4555667888888888888654 47899999999999999999999
Q ss_pred HH-cCCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHH
Q 014325 171 VY-TGMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYWNN 209 (426)
Q Consensus 171 l~-~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf~~ 209 (426)
|. .++++++|+++++++|+. ....++|.++|..|++
T Consensus 96 m~~~~~~~~~A~~~v~~~rp~---~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 96 MKKNGMSLEEAIEYVRSRRPQ---INPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHTSSHHHHHHHHHHHSTT---STHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHCCC---CCCCHHHHHHHHHhhc
Confidence 97 688999999999999953 3456789999988864
No 10
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.51 E-value=4.1e-13 Score=115.39 Aligned_cols=139 Identities=27% Similarity=0.465 Sum_probs=106.5
Q ss_pred eeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccc--cc-eEEeecCCCCCCCHHHH
Q 014325 56 MSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFY--SR-VERYPFDDNHVPPLEMI 132 (426)
Q Consensus 56 ltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~--~~-v~~~p~pD~~~P~l~~l 132 (426)
++|=-=|+++-.-|....-..| ++++. |+ +-..|+.+| |..||...+. |+ |.++++.|..+|+...+
T Consensus 12 Isy~~MrFLIThnPtnaTln~f---ieELk-----Ky-gvttvVRVC-e~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv 81 (173)
T KOG2836|consen 12 ISYKNMRFLITHNPTNATLNKF---IEELK-----KY-GVTTVVRVC-EPTYDTTPLEKEGITVLDWPFDDGAPPPNQVV 81 (173)
T ss_pred eeccceEEEEecCCCchhHHHH---HHHHH-----hc-CCeEEEEec-ccccCCchhhhcCceEeecccccCCCCchHHH
Confidence 4444445555555665532222 23332 23 455799997 7889876654 55 89999999999988888
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHHH
Q 014325 133 KLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYWN 208 (426)
Q Consensus 133 ~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf~ 208 (426)
..+...+..-..+.|+.-|.|||.||+||+.+++|.-|+..||..|+|+++++++|. |.....|+.||.-|.
T Consensus 82 ~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krr----ga~n~kql~~lekyr 153 (173)
T KOG2836|consen 82 DDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRR----GAINSKQLLYLEKYR 153 (173)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhh----ccccHHHHHHHHHhC
Confidence 888887777777889999999999999999999999999999999999999999994 456778988887553
No 11
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.50 E-value=4e-14 Score=116.97 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=73.5
Q ss_pred ceEEeecCCCCCCCH-HHHHHHHHHHHHhhccCC-CCeEEEEcCCCCchhHHHHHHHHHHcCC-------CHHHHHHHHH
Q 014325 115 RVERYPFDDNHVPPL-EMIKLLCESVHSWLSSDP-KNIAVIHCMAGKGRTGLMVCSYLVYTGM-------SAEEALQLYA 185 (426)
Q Consensus 115 ~v~~~p~pD~~~P~l-~~l~~~~~~i~~~L~~~~-~~~VvVHC~aG~GRTGtviaayLl~~g~-------s~~eAl~~~~ 185 (426)
.+++.+|||+.+|.. +.+.++++.+..+....+ +++|+|||.+|+||||+++|++++..+. +..+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 367889999999966 799999999999876532 5799999999999999999999987532 5667777777
Q ss_pred HhcCCCCCCCCCchHhHHHHHH
Q 014325 186 HKRTTNNEGVSIPSQRRYVGYW 207 (426)
Q Consensus 186 ~~R~~~~~~v~~PSQ~ryl~yf 207 (426)
.+| +..++++.|+.|++..
T Consensus 84 ~~r---~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 84 KQR---PGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhh---hhhCCcHHHHHHHHHH
Confidence 666 5678999999998754
No 12
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.50 E-value=4e-14 Score=116.97 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=73.5
Q ss_pred ceEEeecCCCCCCCH-HHHHHHHHHHHHhhccCC-CCeEEEEcCCCCchhHHHHHHHHHHcCC-------CHHHHHHHHH
Q 014325 115 RVERYPFDDNHVPPL-EMIKLLCESVHSWLSSDP-KNIAVIHCMAGKGRTGLMVCSYLVYTGM-------SAEEALQLYA 185 (426)
Q Consensus 115 ~v~~~p~pD~~~P~l-~~l~~~~~~i~~~L~~~~-~~~VvVHC~aG~GRTGtviaayLl~~g~-------s~~eAl~~~~ 185 (426)
.+++.+|||+.+|.. +.+.++++.+..+....+ +++|+|||.+|+||||+++|++++..+. +..+++..++
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 367889999999966 799999999999876532 5799999999999999999999987532 5667777777
Q ss_pred HhcCCCCCCCCCchHhHHHHHH
Q 014325 186 HKRTTNNEGVSIPSQRRYVGYW 207 (426)
Q Consensus 186 ~~R~~~~~~v~~PSQ~ryl~yf 207 (426)
.+| +..++++.|+.|++..
T Consensus 84 ~~r---~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 84 KQR---PGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhh---hhhCCcHHHHHHHHHH
Confidence 666 5678999999998754
No 13
>PRK12361 hypothetical protein; Provisional
Probab=99.48 E-value=5.8e-13 Score=142.68 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=106.6
Q ss_pred ceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCC-ccc-cc-ceEEeecCCCCCCCHHH
Q 014325 55 DMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDP-EHF-YS-RVERYPFDDNHVPPLEM 131 (426)
Q Consensus 55 DltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~-~~~-~~-~v~~~p~pD~~~P~l~~ 131 (426)
.++-|++.++.+++|.... + ..|+ ++ +.-.|+|++.|....+ ..+ .+ .++++|+.|+..|+++.
T Consensus 94 ~~~~I~~~l~lG~~~~a~d----------~-~~L~-~~-gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~ 160 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPAD----------L-EKLK-SN-KITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQ 160 (547)
T ss_pred cceEEcCcEEECCCCCccc----------H-HHHH-Hc-CCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHH
Confidence 3467999999999987542 1 1232 23 3346999975543211 122 22 48899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHH
Q 014325 132 IKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYT--GMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYWNN 209 (426)
Q Consensus 132 l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~--g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf~~ 209 (426)
+.++++.|++..+++ +.|+|||.+|+|||+++++||||.. ++++++|+++++++|+. ..+++.|++.+..|.+
T Consensus 161 l~~a~~~i~~~~~~~--~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~---v~~n~~q~~~l~~~~~ 235 (547)
T PRK12361 161 LNQAINWIHRQVRAN--KSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKT---ARLNKRQLRALEKMLE 235 (547)
T ss_pred HHHHHHHHHHHHHCC--CeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHH
Confidence 999999999987653 6799999999999999999999975 57999999999999964 4578899999987765
Q ss_pred H
Q 014325 210 I 210 (426)
Q Consensus 210 l 210 (426)
-
T Consensus 236 ~ 236 (547)
T PRK12361 236 Q 236 (547)
T ss_pred c
Confidence 3
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.48 E-value=3.1e-13 Score=124.72 Aligned_cols=93 Identities=27% Similarity=0.425 Sum_probs=79.0
Q ss_pred ceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHc-CC-CHHHHHHHHHHhcCCCC
Q 014325 115 RVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYT-GM-SAEEALQLYAHKRTTNN 192 (426)
Q Consensus 115 ~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~-g~-s~~eAl~~~~~~R~~~~ 192 (426)
++.++|++|+.+|++..+.++++.|++.+++. +.|+|||.+|+|||||++|||||.. +. .+++|+...+.+|+.
T Consensus 74 ~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g--~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~-- 149 (180)
T COG2453 74 QVLHLPILDGTVPDLEDLDKIVDFIEEALSKG--KKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG-- 149 (180)
T ss_pred eeeeeeecCCCCCcHHHHHHHHHHHHHHHhcC--CeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc--
Confidence 38899999999999999999999999998764 4799999999999999999999975 44 888888888888853
Q ss_pred CCCCCchHhHHHHHHHHHhc
Q 014325 193 EGVSIPSQRRYVGYWNNIIS 212 (426)
Q Consensus 193 ~~v~~PSQ~ryl~yf~~ll~ 212 (426)
.+.++.|.+|.........
T Consensus 150 -~v~~~~q~~~~~e~~~~~~ 168 (180)
T COG2453 150 -AVVTEIQHLFELEQELFRK 168 (180)
T ss_pred -ccccHHHHHHHHHHHHHHh
Confidence 5678888888776666554
No 15
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.39 E-value=1.5e-12 Score=114.52 Aligned_cols=92 Identities=25% Similarity=0.358 Sum_probs=78.2
Q ss_pred eEEeecCCC-CCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH-cCCCHHHHHHHHHHhcCCCCC
Q 014325 116 VERYPFDDN-HVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY-TGMSAEEALQLYAHKRTTNNE 193 (426)
Q Consensus 116 v~~~p~pD~-~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~-~g~s~~eAl~~~~~~R~~~~~ 193 (426)
.+.+|.-|. ++|+++.|...++.|+++...+ ..|.|||+||+|||+|+++||||. .+|++++|.+.+++.|++
T Consensus 78 ~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLG--ktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~--- 152 (183)
T KOG1719|consen 78 FLVIPTRDYTGAPSLENIQKAVEFIHKNASLG--KTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPR--- 152 (183)
T ss_pred eEEeccccccCCCCHHHHHHHHHHHHhccccC--CeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcc---
Confidence 566777776 6899999999999999988754 579999999999999999999997 588999999999999964
Q ss_pred CCCCchHhHHHHHH-HHHhc
Q 014325 194 GVSIPSQRRYVGYW-NNIIS 212 (426)
Q Consensus 194 ~v~~PSQ~ryl~yf-~~ll~ 212 (426)
...-|+|.+-+..| ..++.
T Consensus 153 VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 153 VLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred eeecHHHHHHHHHHHHHHHh
Confidence 46789999988754 44444
No 16
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=99.37 E-value=5.3e-13 Score=134.04 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=68.8
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhcc-CCCCeEEEEcCCCCchhHHHHHHHHHH-----cCC-CHHHHHHHHHHh
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLSS-DPKNIAVIHCMAGKGRTGLMVCSYLVY-----TGM-SAEEALQLYAHK 187 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~~-~~~~~VvVHC~aG~GRTGtviaayLl~-----~g~-s~~eAl~~~~~~ 187 (426)
+++..||||++|. ...++.|++.++.--+. -.-++|+|||+||+|||||+|...++. .|+ ..-+....+.+.
T Consensus 417 yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmV 496 (600)
T KOG0790|consen 417 YHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMV 496 (600)
T ss_pred hheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHH
Confidence 6789999999995 55888999998865332 112599999999999999999887764 255 344444555555
Q ss_pred cCCCCCCCCCchHhHHHHH
Q 014325 188 RTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 188 R~~~~~~v~~PSQ~ryl~y 206 (426)
|.++.+.|+|..|++||++
T Consensus 497 RsqRSGmVQTEaQYkFiY~ 515 (600)
T KOG0790|consen 497 RSQRSGMVQTEAQYKFIYV 515 (600)
T ss_pred HHHhcchhhhHHhHHHHHH
Confidence 5555778999999999986
No 17
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.32 E-value=4.9e-12 Score=125.58 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=66.3
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHhh-------ccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC------CHHHHH
Q 014325 116 VERYPFDDNHVP-PLEMIKLLCESVHSWL-------SSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM------SAEEAL 181 (426)
Q Consensus 116 v~~~p~pD~~~P-~l~~l~~~~~~i~~~L-------~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~------s~~eAl 181 (426)
+++..|||+++| +...+++|+..+.+.. .....+|+||||+||+||||++||...+...+ +..+++
T Consensus 181 fqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V 260 (298)
T PHA02740 181 FQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANAL 260 (298)
T ss_pred EeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 556799999999 4668888887776542 11234699999999999999999998875322 455555
Q ss_pred HHHHHhcCCCCCCCCCchHhHHHHH
Q 014325 182 QLYAHKRTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 182 ~~~~~~R~~~~~~v~~PSQ~ryl~y 206 (426)
..++++| +..|+++.|+.|++.
T Consensus 261 ~~lR~qR---~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 261 KKVRQKK---YGCMNCLDDYVFCYH 282 (298)
T ss_pred HHHHhhC---ccccCCHHHHHHHHH
Confidence 5555554 788999999999985
No 18
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.31 E-value=5.4e-12 Score=120.27 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred eEEeecCCCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcC------CCHHHHHHHHHHhc
Q 014325 116 VERYPFDDNHVPPL-EMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTG------MSAEEALQLYAHKR 188 (426)
Q Consensus 116 v~~~p~pD~~~P~l-~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g------~s~~eAl~~~~~~R 188 (426)
+++..|||+.+|+. +.+.++++.+........+++|+|||.+|.||||+++|++++... .++.+|+..++++|
T Consensus 133 ~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R 212 (231)
T cd00047 133 FQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQR 212 (231)
T ss_pred EeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhcc
Confidence 44567999999865 788999999988764344579999999999999999999987532 38899999998888
Q ss_pred CCCCCCCCCchHhHHHHHH
Q 014325 189 TTNNEGVSIPSQRRYVGYW 207 (426)
Q Consensus 189 ~~~~~~v~~PSQ~ryl~yf 207 (426)
+..++++.|++|++..
T Consensus 213 ---~~~v~~~~Qy~f~~~~ 228 (231)
T cd00047 213 ---PGMVQTEEQYIFLYRA 228 (231)
T ss_pred ---ccccCCHHHHHHHHHH
Confidence 4688999999999864
No 19
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.29 E-value=7.2e-12 Score=121.53 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=72.9
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHc------CCCHHHHHHHHHHhc
Q 014325 116 VERYPFDDNHVP-PLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYT------GMSAEEALQLYAHKR 188 (426)
Q Consensus 116 v~~~p~pD~~~P-~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~------g~s~~eAl~~~~~~R 188 (426)
+++..|||+++| +.+.++++++.+..+... ..++|+|||.+|.||||+++|++++.. ..+..+++..++++|
T Consensus 161 ~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R 239 (258)
T smart00194 161 YHYTNWPDHGVPESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQR 239 (258)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 566799999999 567899999999987653 247999999999999999999998753 238888888888888
Q ss_pred CCCCCCCCCchHhHHHHH
Q 014325 189 TTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 189 ~~~~~~v~~PSQ~ryl~y 206 (426)
+.+++++.|++|++.
T Consensus 240 ---~~~v~~~~Qy~f~~~ 254 (258)
T smart00194 240 ---PGMVQTEEQYIFLYR 254 (258)
T ss_pred ---ccccCCHHHHHHHHH
Confidence 468999999999874
No 20
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.24 E-value=2.9e-11 Score=125.00 Aligned_cols=94 Identities=20% Similarity=0.318 Sum_probs=72.9
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhccC-------CCCeEEEEcCCCCchhHHHHHHHHHHc-CC-CHHHHHHHHH
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLSSD-------PKNIAVIHCMAGKGRTGLMVCSYLVYT-GM-SAEEALQLYA 185 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~~~-------~~~~VvVHC~aG~GRTGtviaayLl~~-g~-s~~eAl~~~~ 185 (426)
+++..||||++|+ .+.+..+.+.++.+-... ++...+|||+||+|||||+||++++.. +. +.++++..+|
T Consensus 426 FHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR 505 (535)
T PRK15375 426 LHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFR 505 (535)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 5667899999875 457888888888763221 112348999999999999999999863 33 8888888888
Q ss_pred HhcCCCCCCCCCchHhHHHHHHHHHh
Q 014325 186 HKRTTNNEGVSIPSQRRYVGYWNNII 211 (426)
Q Consensus 186 ~~R~~~~~~v~~PSQ~ryl~yf~~ll 211 (426)
..|. +.+|+++.|+-++.-++..|
T Consensus 506 ~qRn--g~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 506 NSRN--NRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred hcCC--ccccccHHHHHHHHHHHHHH
Confidence 8884 34899999999998777543
No 21
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.23 E-value=1.8e-11 Score=121.96 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=66.6
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhcc----------CCCCeEEEEcCCCCchhHHHHHHHHHHcCC------CHH
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLSS----------DPKNIAVIHCMAGKGRTGLMVCSYLVYTGM------SAE 178 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~~----------~~~~~VvVHC~aG~GRTGtviaayLl~~g~------s~~ 178 (426)
+++..|||+++|. ...+++++..+.++... ...+|++|||.||+||||++||...+...+ +..
T Consensus 186 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~ 265 (303)
T PHA02742 186 FAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLL 265 (303)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHH
Confidence 4556999999995 56888999888764321 123699999999999999999998875322 455
Q ss_pred HHHHHHHHhcCCCCCCCCCchHhHHHHH
Q 014325 179 EALQLYAHKRTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 179 eAl~~~~~~R~~~~~~v~~PSQ~ryl~y 206 (426)
+++..++++| +.+|+++.|+.|++.
T Consensus 266 ~~V~~lR~qR---~~~Vqt~~QY~F~y~ 290 (303)
T PHA02742 266 SIVRDLRKQR---HNCLSLPQQYIFCYF 290 (303)
T ss_pred HHHHHHHhhc---ccccCCHHHHHHHHH
Confidence 5555555555 678999999999875
No 22
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.23 E-value=7.8e-12 Score=136.60 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=70.5
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC---CHHHHHHHHHHhcCCC
Q 014325 116 VERYPFDDNHVP-PLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM---SAEEALQLYAHKRTTN 191 (426)
Q Consensus 116 v~~~p~pD~~~P-~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~---s~~eAl~~~~~~R~~~ 191 (426)
+.+..||||++| +...+++|++.|...-.. .+.||+|||+||+||||++|++-++.+-+ -+-+.++.++.+|-++
T Consensus 1031 LQYtaWPDHg~P~D~~~FL~FleevrsvR~~-t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR 1109 (1144)
T KOG0792|consen 1031 LQYTAWPDHGVPDDPNDFLDFLEEVRSVRRG-TNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQR 1109 (1144)
T ss_pred eeecccccCCCCCChHHHHHHHHHHHHHhcc-CCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 466899999999 577999999999986543 24599999999999999999776654322 2334445555555555
Q ss_pred CCCCCCchHhHHHHH-HHHHhc
Q 014325 192 NEGVSIPSQRRYVGY-WNNIIS 212 (426)
Q Consensus 192 ~~~v~~PSQ~ryl~y-f~~ll~ 212 (426)
...|+|++||+||+- .-..|.
T Consensus 1110 ~~mVQT~~QYkFVyevil~~l~ 1131 (1144)
T KOG0792|consen 1110 AMMVQTLSQYKFVYEVILRVLK 1131 (1144)
T ss_pred hhhccchHHhhHHHHHHHHHHH
Confidence 678999999999974 334443
No 23
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.20 E-value=3.6e-11 Score=120.25 Aligned_cols=86 Identities=12% Similarity=0.214 Sum_probs=64.4
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhcc-----C----CCCeEEEEcCCCCchhHHHHHHHHHHcCC------CHHH
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLSS-----D----PKNIAVIHCMAGKGRTGLMVCSYLVYTGM------SAEE 179 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~~-----~----~~~~VvVHC~aG~GRTGtviaayLl~~g~------s~~e 179 (426)
+++..|||+++|. ...+++++..+..+.+. . ..+|++|||+||+||||++||+.++...+ +..+
T Consensus 187 ~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~ 266 (312)
T PHA02747 187 FQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAK 266 (312)
T ss_pred EEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 4556999999995 56777887777654321 0 12599999999999999999998765322 5666
Q ss_pred HHHHHHHhcCCCCCCCCCchHhHHH
Q 014325 180 ALQLYAHKRTTNNEGVSIPSQRRYV 204 (426)
Q Consensus 180 Al~~~~~~R~~~~~~v~~PSQ~ryl 204 (426)
++..++++| +.+|+++.|+.|+
T Consensus 267 ~V~~lR~qR---~~~Vqt~~QY~F~ 288 (312)
T PHA02747 267 TAEKIREQR---HAGIMNFDDYLFI 288 (312)
T ss_pred HHHHHHhcc---ccccCCHHHHHHH
Confidence 666666655 6789999999999
No 24
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.18 E-value=4.3e-11 Score=120.20 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=66.8
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhcc-------CC--CCeEEEEcCCCCchhHHHHHHHHHHcCC------CHHH
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLSS-------DP--KNIAVIHCMAGKGRTGLMVCSYLVYTGM------SAEE 179 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~~-------~~--~~~VvVHC~aG~GRTGtviaayLl~~g~------s~~e 179 (426)
+++..|||+++|. ...++++++.+.++... ++ .+|++|||++|.||||++||...+...+ +..+
T Consensus 205 ~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~ 284 (323)
T PHA02746 205 FWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGE 284 (323)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHH
Confidence 4567999999995 56888998888776421 11 3699999999999999999987764322 5555
Q ss_pred HHHHHHHhcCCCCCCCCCchHhHHHHH
Q 014325 180 ALQLYAHKRTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 180 Al~~~~~~R~~~~~~v~~PSQ~ryl~y 206 (426)
++..++++| +..|+++.|+.|++.
T Consensus 285 ~V~~lR~qR---~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 285 IVLKIRKQR---HSSVFLPEQYAFCYK 308 (323)
T ss_pred HHHHHHhcc---cccCCCHHHHHHHHH
Confidence 555555555 678999999999884
No 25
>PHA02738 hypothetical protein; Provisional
Probab=99.16 E-value=7.9e-11 Score=118.13 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=66.3
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhc--------c-C---CCCeEEEEcCCCCchhHHHHHHHHHHcCC------C
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLS--------S-D---PKNIAVIHCMAGKGRTGLMVCSYLVYTGM------S 176 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~--------~-~---~~~~VvVHC~aG~GRTGtviaayLl~~g~------s 176 (426)
+++..|||+++|. ...+++++..+.++-. . + ..+|++|||.+|.||||++||...+...+ +
T Consensus 182 ~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vd 261 (320)
T PHA02738 182 FNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVS 261 (320)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcC
Confidence 4567999999994 5688888888776431 1 1 13589999999999999999998875422 5
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchHhHHHHH
Q 014325 177 AEEALQLYAHKRTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 177 ~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~y 206 (426)
..+++..++++| +.+++++.|+.|++.
T Consensus 262 v~~~V~~lR~qR---~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 262 IPSIVSSIRNQR---YYSLFIPFQYFFCYR 288 (320)
T ss_pred HHHHHHHHHhhh---hhccCCHHHHHHHHH
Confidence 555555555555 678999999999875
No 26
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-10 Score=115.68 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=83.8
Q ss_pred ceEEeecCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC---CHHHHHHHHHHhcCC
Q 014325 115 RVERYPFDDNHVP-PLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM---SAEEALQLYAHKRTT 190 (426)
Q Consensus 115 ~v~~~p~pD~~~P-~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~---s~~eAl~~~~~~R~~ 190 (426)
++++..||||++| +...+.+|.+.+.+++... ..+++|||+||+|||||++|..-+.... ...+.+..+.++|..
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~ 332 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSA 332 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccC-CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhc
Confidence 4788999999999 4568899999999999865 5699999999999999999998876544 467788888899998
Q ss_pred CCCCCCCchHhHHHHH-HHHHhcC
Q 014325 191 NNEGVSIPSQRRYVGY-WNNIISF 213 (426)
Q Consensus 191 ~~~~v~~PSQ~ryl~y-f~~ll~~ 213 (426)
++.+|++..|+-||+. +..+|..
T Consensus 333 R~~mVqte~Qyvfl~~c~~~~l~~ 356 (374)
T KOG0791|consen 333 RMLMVQTEDQYVFLHQCVLESLQG 356 (374)
T ss_pred cccccchHHHHHHHHHHHHHHHhC
Confidence 8999999999999996 5666654
No 27
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.12 E-value=2.3e-10 Score=108.12 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=73.0
Q ss_pred eEEeecCCCCCC-CHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC------CHHHHHHHHHHhc
Q 014325 116 VERYPFDDNHVP-PLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM------SAEEALQLYAHKR 188 (426)
Q Consensus 116 v~~~p~pD~~~P-~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~------s~~eAl~~~~~~R 188 (426)
+++..|+++.+| +.+.++.+++.+..+. ....++++|||.+|.||||+++|+.++...+ +..+++..++++|
T Consensus 138 ~~~~~W~~~~~P~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R 216 (235)
T PF00102_consen 138 FHYTNWPDDGVPPSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQR 216 (235)
T ss_dssp EEEESSSSSSSGSSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTS
T ss_pred eeeeeccccccccccchhhhhhhhccccc-cCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhC
Confidence 556799999988 5788899999999987 4456899999999999999999999986533 6667777766666
Q ss_pred CCCCCCCCCchHhHHHHHH
Q 014325 189 TTNNEGVSIPSQRRYVGYW 207 (426)
Q Consensus 189 ~~~~~~v~~PSQ~ryl~yf 207 (426)
+.+++++.|+.|++..
T Consensus 217 ---~~~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 217 ---PGAIQSPEQYRFCYMA 232 (235)
T ss_dssp ---TTSSSSHHHHHHHHHH
T ss_pred ---CCccCCHHHHHHHHHH
Confidence 6789999999998864
No 28
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.96 E-value=1.3e-08 Score=91.08 Aligned_cols=120 Identities=23% Similarity=0.305 Sum_probs=82.6
Q ss_pred ceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCccccc-ceEEeecCCCCCCCHHHHH
Q 014325 55 DMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYS-RVERYPFDDNHVPPLEMIK 133 (426)
Q Consensus 55 DltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~-~v~~~p~pD~~~P~l~~l~ 133 (426)
-++-||+.++....-+.. ...+|+ ++ +..+|+|...|-. +. .+.+ ++..+|..|+.-..+...+
T Consensus 16 ~~SqIt~sLfl~~GvaA~-----------~k~~l~-~~-~It~IiNat~E~p-n~-~l~~~qy~kv~~~D~p~~~l~~hf 80 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGVAAN-----------DKLLLK-KR-KITCIINATTEVP-NT-SLPDIQYMKVPLEDTPQARLYDHF 80 (198)
T ss_pred chhhcCcceeEecccccc-----------CHHHHH-hc-CceEEEEcccCCC-Cc-cCCCceeEEEEcccCCcchhhhhh
Confidence 467888888777322211 112222 33 4458999955433 22 2333 3788899998766665554
Q ss_pred H-HHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHH-HcCCCHHHHHHHHHHhcCCC
Q 014325 134 L-LCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLV-YTGMSAEEALQLYAHKRTTN 191 (426)
Q Consensus 134 ~-~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl-~~g~s~~eAl~~~~~~R~~~ 191 (426)
+ +.+.|++.... ++.++|||.||++||+.+|.|||| |.+++..||..+++.+|+..
T Consensus 81 D~vAD~I~~v~~~--gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiI 138 (198)
T KOG1718|consen 81 DPVADKIHSVIMR--GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPII 138 (198)
T ss_pred hHHHHHHHHHHhc--CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCcee
Confidence 4 34445554432 467999999999999999999999 57999999999999999865
No 29
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.96 E-value=4.4e-10 Score=107.10 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=66.9
Q ss_pred eEEeecCCCCCCCHHHHHHHHHHHHHhhccC-CCCeEEEEcCCCCchhHHHHHHHHHHcCC------------CHHHHHH
Q 014325 116 VERYPFDDNHVPPLEMIKLLCESVHSWLSSD-PKNIAVIHCMAGKGRTGLMVCSYLVYTGM------------SAEEALQ 182 (426)
Q Consensus 116 v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~-~~~~VvVHC~aG~GRTGtviaayLl~~g~------------s~~eAl~ 182 (426)
+.+..|+|...|++..+ ++.++...... ..++++|||.||.|||||+||...+.+-. +-+-.++
T Consensus 188 f~y~nW~D~~~p~i~sl---~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~ 264 (302)
T COG5599 188 FQYINWVDFNVPDIRSL---TEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQ 264 (302)
T ss_pred EEecCccccCCcCHHHH---HHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHH
Confidence 44568999999955544 55555544332 46899999999999999999998876422 1233556
Q ss_pred HHHHhcCCCCCCCCCchHhHHHHHHHHHh
Q 014325 183 LYAHKRTTNNEGVSIPSQRRYVGYWNNII 211 (426)
Q Consensus 183 ~~~~~R~~~~~~v~~PSQ~ryl~yf~~ll 211 (426)
.+.+.|.++.++|++--|..||+-...-|
T Consensus 265 iV~~LRsQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 265 IVLSLRSQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66667766678999999999998654443
No 30
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.87 E-value=1e-08 Score=97.78 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=73.0
Q ss_pred CeEEEeeeccCCCCCCccccc--ceEEeecCCCCCCCHHH-HHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHH
Q 014325 94 EHYKVYNLCIEETYDPEHFYS--RVERYPFDDNHVPPLEM-IKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYL 170 (426)
Q Consensus 94 ~~y~V~NL~se~~y~~~~~~~--~v~~~p~pD~~~P~l~~-l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayL 170 (426)
+.-.|+|+ +.+-...-.-.+ ++..+|+.||..-.+.. +.+++..|++...++ --|+|||.||++||.|++++||
T Consensus 197 gI~yviNV-Tpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk~--cgvLVHClaGISRSvTvtvaYL 273 (343)
T KOG1717|consen 197 GIKYVINV-TPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSKN--CGVLVHCLAGISRSVTVTVAYL 273 (343)
T ss_pred CceEEEec-CCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhccC--CcEEEeeeccccchhHHHHHHH
Confidence 33458999 444322111122 37889999999888874 457888899888765 4599999999999999999999
Q ss_pred HHc-CCCHHHHHHHHHHhcCCC
Q 014325 171 VYT-GMSAEEALQLYAHKRTTN 191 (426)
Q Consensus 171 l~~-g~s~~eAl~~~~~~R~~~ 191 (426)
|.. .++..+|.+++..++...
T Consensus 274 Mqkl~lslndAyd~Vk~kksni 295 (343)
T KOG1717|consen 274 MQKLNLSLNDAYDFVKHKKSNI 295 (343)
T ss_pred HHHhccchhhHHHHHHHhccCC
Confidence 975 669999999999998654
No 31
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.83 E-value=7.8e-08 Score=95.10 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=98.9
Q ss_pred cceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCc-ccc-cc-eEEeecCCCCCCCHH
Q 014325 54 LDMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPE-HFY-SR-VERYPFDDNHVPPLE 130 (426)
Q Consensus 54 LDltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~-~~~-~~-v~~~p~pD~~~P~l~ 130 (426)
.+++-|.+.++..+++.... ...|. + .+.-.|+|+.++.. .+. ... +. +.+++..|....++.
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~-----------~~~l~-~-~~it~vln~~~~~~-~~~~~~~~~~~y~~i~~~D~~~~~i~ 138 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASD-----------PDLLK-K-LGITHVLNVSSSCP-NPRFLKEQGIKYLRIPVEDNPSTDIL 138 (285)
T ss_pred CCceeecCCceecCcccccc-----------hhhHH-H-cCCCEEEEecccCC-ccccccccCceEEeccccCCccccHH
Confidence 46677888888888773221 11121 2 23346888843322 111 112 33 677777787777765
Q ss_pred -HHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH-cCCCHHHHHHHHHHhcCCCCCCCCCchHhHHHHHHH
Q 014325 131 -MIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY-TGMSAEEALQLYAHKRTTNNEGVSIPSQRRYVGYWN 208 (426)
Q Consensus 131 -~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~-~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~yf~ 208 (426)
.+.+.++.|+..... ++.|+|||.+|++||++++.||||+ .+++.++|+++++++|+.. .+...-++.+.-|+
T Consensus 139 ~~~~~~~~fI~~a~~~--~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i---~PN~gf~~QL~~~e 213 (285)
T KOG1716|consen 139 QHFPEAISFIEKAREK--GGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPII---SPNFGFLRQLLEFE 213 (285)
T ss_pred HHHHHHHHHHHHHHhC--CCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCcc---CCCHHHHHHHHHHH
Confidence 466777778877765 4789999999999999999999996 6999999999999999654 34667777888888
Q ss_pred HHhcC
Q 014325 209 NIISF 213 (426)
Q Consensus 209 ~ll~~ 213 (426)
+.+..
T Consensus 214 ~~l~~ 218 (285)
T KOG1716|consen 214 KRLSK 218 (285)
T ss_pred Hhhcc
Confidence 87764
No 32
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.76 E-value=3.6e-09 Score=117.14 Aligned_cols=118 Identities=16% Similarity=0.253 Sum_probs=86.0
Q ss_pred HHhhcCCeEEEeeeccC-CCCCCcccccceEEeecCCCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHH
Q 014325 88 LDMRHQEHYKVYNLCIE-ETYDPEHFYSRVERYPFDDNHVPPL-EMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLM 165 (426)
Q Consensus 88 L~~kh~~~y~V~NL~se-~~y~~~~~~~~v~~~p~pD~~~P~l-~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtv 165 (426)
.+.+....|.|.-++-. ..+.+.+...+++...||||++|.. ..++.|.+.+..+-.- ..+++||||+||.||||++
T Consensus 669 ~~~~~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~-~aGPiVVHCSAGvGRTG~f 747 (1087)
T KOG4228|consen 669 VQTKPLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPP-DAGPIVVHCSAGVGRTGCF 747 (1087)
T ss_pred eeeeeeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCc-CCCCEEEECCCCCCCcceE
Confidence 34444556666555433 2344433334577789999999965 6888999988876522 2379999999999999999
Q ss_pred HHHHHHHcCC---CHHHHHHHHHHhcCCCCCCCCCchHhHHHHH
Q 014325 166 VCSYLVYTGM---SAEEALQLYAHKRTTNNEGVSIPSQRRYVGY 206 (426)
Q Consensus 166 iaayLl~~g~---s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl~y 206 (426)
++..-|...+ ...+....+...|.++...|++-+|+-|++.
T Consensus 748 i~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~ 791 (1087)
T KOG4228|consen 748 IVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHE 791 (1087)
T ss_pred EEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHH
Confidence 9887776544 4556677778888888889999999888874
No 33
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.66 E-value=9.4e-08 Score=86.99 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred cceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCC-CCCccc---ccc-eEEeecCCCCC--
Q 014325 54 LDMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEET-YDPEHF---YSR-VERYPFDDNHV-- 126 (426)
Q Consensus 54 LDltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~-y~~~~~---~~~-v~~~p~pD~~~-- 126 (426)
+++..|.+.|+-.++|... . -.||++ .+-+ .|+||+.+.. .+...| +++ +.+++......
T Consensus 5 ~nF~~V~~~vYRS~~P~~~----------n-~~fL~~-L~LK-TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~ 71 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPA----------N-FPFLER-LGLK-TIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPW 71 (164)
T ss_dssp TT-EEEETTEEEESS--HH----------H-HHHHHH-HT-S-EEEE--SS---HHHHHHHHHTT-EEEE-------GGG
T ss_pred ccccCCCCCccCCCCCChh----------h-HHHHHH-CCCc-eEEEecCCCCCHHHHHHHhhcCceEEEeccccccCcc
Confidence 5778899999999999753 1 235554 3333 6999964422 111122 233 67777765544
Q ss_pred --CCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCchHhHHH
Q 014325 127 --PPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYAHKRTTNNEGVSIPSQRRYV 204 (426)
Q Consensus 127 --P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~~~R~~~~~~v~~PSQ~ryl 204 (426)
++.+.+.++++.+.+ . .+.||+|||..|..|||+++|||-..+||+...|++.++.--.. -....-.+||
T Consensus 72 ~~~~~~~v~~aL~~ild---~-~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~----~~~~~~~~fI 143 (164)
T PF03162_consen 72 VPISEEQVAEALEIILD---P-RNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGP----KIRYLDEQFI 143 (164)
T ss_dssp ----HHHHHHHHHHHH----G-GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGG----G--HHHHHHH
T ss_pred ccCCHHHHHHHHHHHhC---C-CCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhcCC----CCcHHHHHHH
Confidence 244555555554433 2 34799999999999999999999988999999999998754321 1234556677
Q ss_pred HHHHHHh
Q 014325 205 GYWNNII 211 (426)
Q Consensus 205 ~yf~~ll 211 (426)
..|..=+
T Consensus 144 e~f~~~~ 150 (164)
T PF03162_consen 144 ELFDVEL 150 (164)
T ss_dssp HT-----
T ss_pred HhcCcce
Confidence 7776543
No 34
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.63 E-value=4.1e-08 Score=101.27 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=61.9
Q ss_pred eEEeecCCCCCCC-HHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH----cCC---CHHHHHHHHHHh
Q 014325 116 VERYPFDDNHVPP-LEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY----TGM---SAEEALQLYAHK 187 (426)
Q Consensus 116 v~~~p~pD~~~P~-l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~----~g~---s~~eAl~~~~~~ 187 (426)
+++..|||+++|. ...++.+++. .........++++|||.+|.||||++++...+. .+. ...+.+..++.+
T Consensus 267 ~~~~~WPd~~~p~~~~~~l~~~~~-~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q 345 (415)
T KOG0789|consen 267 YHYINWPDHGAPDSVKSILPLLRQ-SVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ 345 (415)
T ss_pred EeeCCCccccCCcchHHHHHHHHh-hhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 5667999999886 4455566554 112222235799999999999999999876432 222 466666666666
Q ss_pred cCCCCCCCCCchHhHHHHHHH
Q 014325 188 RTTNNEGVSIPSQRRYVGYWN 208 (426)
Q Consensus 188 R~~~~~~v~~PSQ~ryl~yf~ 208 (426)
| ..++++..|+.|++.-.
T Consensus 346 R---~~~vqt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 346 R---PGAVQSPLQYLFIYAAT 363 (415)
T ss_pred h---hhcccchhHHHHHHHHH
Confidence 5 56899999999988533
No 35
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.57 E-value=1.1e-06 Score=77.46 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=77.7
Q ss_pred eeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCC--CCCCcc--------cccc-eEEeecCCC
Q 014325 56 MSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEE--TYDPEH--------FYSR-VERYPFDDN 124 (426)
Q Consensus 56 ltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~--~y~~~~--------~~~~-v~~~p~pD~ 124 (426)
+.-|++.+.+.+-|.+. ++.. |.. .+--.|+||++.. ...+.. -.|. +.++|+...
T Consensus 2 ~~~i~~~~~~s~qlt~~----------d~~~-L~~--~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~ 68 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKA----------DAAQ-AAQ--LGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG 68 (135)
T ss_pred ceEcCCCeeEcCCCCHH----------HHHH-HHH--CCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC
Confidence 45678888888777654 3333 322 2555799998543 222221 1233 778887655
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHHhcC
Q 014325 125 HVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYAHKRT 189 (426)
Q Consensus 125 ~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~~~R~ 189 (426)
. ++.+.+..|.+.+++ ..++|++||++|+ |||++.+.++...|++.+++++..+..-.
T Consensus 69 ~-~~~~~v~~f~~~~~~-----~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 69 D-ITPDDVETFRAAIGA-----AEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAAGY 126 (135)
T ss_pred C-CCHHHHHHHHHHHHh-----CCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 4 455666666665542 2378999999999 99999998888889999999999876643
No 36
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.32 E-value=9.8e-07 Score=93.51 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=69.5
Q ss_pred eEEeecCCCCCCCH-HHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC-------CHHHHHHHHHHh
Q 014325 116 VERYPFDDNHVPPL-EMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM-------SAEEALQLYAHK 187 (426)
Q Consensus 116 v~~~p~pD~~~P~l-~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~-------s~~eAl~~~~~~ 187 (426)
++.+.||+.++|.. ..|++|-+.+.+.... ..-+|+|||++|-|||||.|+..|+...| .....|+.++.+
T Consensus 895 FHfLSWp~egvPasarslLdFRRKVNK~YRG-RScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 895 FHFLSWPDEGVPASARSLLDFRRKVNKCYRG-RSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeecccccCCccchHHHHHHHHHhhhhccC-CCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 67889999999954 5899999999987764 35799999999999999999998886433 444556666666
Q ss_pred cCCCCCCCCCchHhHHHH
Q 014325 188 RTTNNEGVSIPSQRRYVG 205 (426)
Q Consensus 188 R~~~~~~v~~PSQ~ryl~ 205 (426)
| ++.|.+-.|..|+.
T Consensus 974 R---~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 974 R---PGMVATKDQFEFAL 988 (1004)
T ss_pred C---CcceeehhhhHHHH
Confidence 6 67899999998875
No 37
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.22 E-value=3.5e-06 Score=85.70 Aligned_cols=128 Identities=20% Similarity=0.335 Sum_probs=94.5
Q ss_pred CEEEecCCCc------cchhhhcCCHHHHHHHHHhhcCCeEEEeeec-cCCCCCCcccc--cc-eEEeecCCCC-CCCHH
Q 014325 62 RLLAMSFPAE------HMRAVYRNPLWQVKAVLDMRHQEHYKVYNLC-IEETYDPEHFY--SR-VERYPFDDNH-VPPLE 130 (426)
Q Consensus 62 rIiam~~P~~------~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~-se~~y~~~~~~--~~-v~~~p~pD~~-~P~l~ 130 (426)
|+++.-.|-. ..+..++-.-.++-+.|.++...-..+++|. +.+.|+..... +. +....-+.+. +|..+
T Consensus 25 rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~ 104 (393)
T KOG2386|consen 25 RFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTE 104 (393)
T ss_pred eEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCcc
Confidence 5555544432 2233346566788888877655556677774 33456443333 32 5556666666 79999
Q ss_pred HHHHHHHHHHHhhc--cCCCCeEEEEcCCCCchhHHHHHHHHHHc-CCCHHHHHHHHHHhcC
Q 014325 131 MIKLLCESVHSWLS--SDPKNIAVIHCMAGKGRTGLMVCSYLVYT-GMSAEEALQLYAHKRT 189 (426)
Q Consensus 131 ~l~~~~~~i~~~L~--~~~~~~VvVHC~aG~GRTGtviaayLl~~-g~s~~eAl~~~~~~R~ 189 (426)
....|++.+..+.. ..++..|+|||..|+.|||.+||+||+.. +++..+|+..|+..|+
T Consensus 105 ~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~ 166 (393)
T KOG2386|consen 105 LVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARP 166 (393)
T ss_pred chHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCC
Confidence 99999999999998 67788999999999999999999999975 5699999999999994
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.09 E-value=6.5e-06 Score=73.75 Aligned_cols=54 Identities=30% Similarity=0.446 Sum_probs=40.7
Q ss_pred eEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH
Q 014325 116 VERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY 172 (426)
Q Consensus 116 v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~ 172 (426)
+.++|++|+..|..+.+-+|+..+.+. . ++..+++||.+|+|||.++.++|.|.
T Consensus 95 Y~Ripitd~~~P~~~~iD~fi~~v~~~-p--~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 95 YYRIPITDHQAPDPEDIDAFINFVKSL-P--KDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp EEEEEE-TTS---HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCHHHHHHHHHHHHhC-C--CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 889999999999999999999888876 2 24689999999999999888877663
No 39
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.05 E-value=3.8e-06 Score=93.67 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=71.6
Q ss_pred eEEeecCCCCCCCHH--HHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC---CHHHHHHHHHHhcCC
Q 014325 116 VERYPFDDNHVPPLE--MIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM---SAEEALQLYAHKRTT 190 (426)
Q Consensus 116 v~~~p~pD~~~P~l~--~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~---s~~eAl~~~~~~R~~ 190 (426)
++...||....|+.. .+..+......|-+.....+++|||.+|.||||++||+-++...+ ...|.+..++..|.+
T Consensus 984 fq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~ 1063 (1087)
T KOG4228|consen 984 FQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQ 1063 (1087)
T ss_pred EEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhc
Confidence 566789988776543 555666666777766667899999999999999999998887655 445566666677777
Q ss_pred CCCCCCCchHhHHHHHH
Q 014325 191 NNEGVSIPSQRRYVGYW 207 (426)
Q Consensus 191 ~~~~v~~PSQ~ryl~yf 207 (426)
++..+.+..|+.|++--
T Consensus 1064 rp~mv~t~~QY~fcYdv 1080 (1087)
T KOG4228|consen 1064 RPGMVDTSDQYQFCYDV 1080 (1087)
T ss_pred CccccCcHHHHHHHHHH
Confidence 78899999999998753
No 40
>PLN02727 NAD kinase
Probab=98.00 E-value=2.8e-05 Score=86.11 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCC-CCccc--------ccc-eEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeE
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETY-DPEHF--------YSR-VERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIA 151 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y-~~~~~--------~~~-v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~V 151 (426)
++++.+.+ + +--.|+||+.+... .+... .|. +.++|..+..+|+.+.+.+|.+.+++-+ ..||
T Consensus 272 e~la~LA~--~-GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~sl----pkPV 344 (986)
T PLN02727 272 EGLKWLLE--K-GFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSS----KKPI 344 (986)
T ss_pred HHHHHHHH--C-CCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhc----CCCE
Confidence 45655433 2 45579999744331 11111 244 8899999999999999999988885422 3699
Q ss_pred EEEcCCCCchhHHHHHHHHHHc
Q 014325 152 VIHCMAGKGRTGLMVCSYLVYT 173 (426)
Q Consensus 152 vVHC~aG~GRTGtviaayLl~~ 173 (426)
++||+.|.+|||+|+|||+.+.
T Consensus 345 LvHCKSGarRAGamvA~yl~~~ 366 (986)
T PLN02727 345 YLHSKEGVWRTSAMVSRWKQYM 366 (986)
T ss_pred EEECCCCCchHHHHHHHHHHHH
Confidence 9999999999999999999973
No 41
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.96 E-value=1.8e-05 Score=71.69 Aligned_cols=44 Identities=32% Similarity=0.597 Sum_probs=31.1
Q ss_pred HhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 014325 141 SWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYA 185 (426)
Q Consensus 141 ~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~ 185 (426)
..|...+ +++++||.+||.|||+++|..|...|.+.+++++-+.
T Consensus 118 ~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY~ 161 (164)
T PF13350_consen 118 ELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADYL 161 (164)
T ss_dssp HHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3344444 7999999999999999999999999998888776553
No 42
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.67 E-value=0.00027 Score=67.08 Aligned_cols=122 Identities=21% Similarity=0.286 Sum_probs=78.7
Q ss_pred ccceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcc--c---ccc-eEEeecCCCC-
Q 014325 53 DLDMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEH--F---YSR-VERYPFDDNH- 125 (426)
Q Consensus 53 ~LDltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~--~---~~~-v~~~p~pD~~- 125 (426)
.|+++-|-+-|+-.+||.... -.||++ -....|+.||.|. |.... | +++ +.++.++...
T Consensus 57 PlnFs~V~~~lyRSg~P~~~N-----------fsFL~~--L~LksIisL~pE~-yp~~nl~f~~~~~Ik~~~i~ie~~k~ 122 (249)
T KOG1572|consen 57 PLNFSMVDNGLYRSGFPRPEN-----------FSFLKT--LHLKSIISLCPEP-YPEENLNFLESNGIKLYQIGIEGEKD 122 (249)
T ss_pred CccccccccceeecCCCCccc-----------hHHHHH--hhhheEEEecCCC-CChHHHHHHHhcCceEEEEecccccc
Confidence 356666667778888887653 234433 2334688887554 44322 1 233 7888887655
Q ss_pred ---CCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 014325 126 ---VPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYAHKR 188 (426)
Q Consensus 126 ---~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~~~R 188 (426)
-|......+.+....+.+-...+.+++|||.-|+-|||++|+|.--.++|+..-.++.+...-
T Consensus 123 ~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 123 NKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFA 188 (249)
T ss_pred cccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhc
Confidence 443333333333333333334557999999999999999999999888998888887776543
No 43
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=97.50 E-value=0.00085 Score=57.11 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=50.9
Q ss_pred ceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccC--CCCCCcc--------cccc-eEEeecCC
Q 014325 55 DMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIE--ETYDPEH--------FYSR-VERYPFDD 123 (426)
Q Consensus 55 DltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se--~~y~~~~--------~~~~-v~~~p~pD 123 (426)
|+..||+++.+.+-|... ++.++ +..|--.|+|++.. ..-.+.. -.|. +.++|+..
T Consensus 1 di~~i~~~~~vs~Q~~~~----------d~~~l---a~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~ 67 (110)
T PF04273_consen 1 DIRQISDDLSVSGQPSPE----------DLAQL---AAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG 67 (110)
T ss_dssp --EEEETTEEEECS--HH----------HHHHH---HHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T
T ss_pred CCEecCCCeEECCCCCHH----------HHHHH---HHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC
Confidence 678899999999988754 34433 22355579999732 2111111 1244 88899886
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHH
Q 014325 124 NHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCS 168 (426)
Q Consensus 124 ~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaa 168 (426)
.. ++.+.+..|.+.+.+ .+ ++|++||+.|. |++.+.+.
T Consensus 68 ~~-~~~~~v~~f~~~l~~----~~-~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 68 GA-ITEEDVEAFADALES----LP-KPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp TT---HHHHHHHHHHHHT----TT-TSEEEE-SCSH-HHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHh----CC-CCEEEECCCCh-hHHHHHHH
Confidence 54 677788888776665 23 58999999998 88776654
No 44
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.38 E-value=0.00037 Score=67.71 Aligned_cols=38 Identities=39% Similarity=0.573 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 014325 148 KNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYA 185 (426)
Q Consensus 148 ~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~ 185 (426)
+.+|++||.+|+-|||+++|+|+...+.+.+++++.+.
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl 173 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYL 173 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHH
Confidence 47999999999999999999999999886665444443
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.89 E-value=0.0019 Score=57.30 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccC-CCCeEEEEcCCCCc----hhHHHHHHHHHH-cCCCHHHHHHHHHHh
Q 014325 122 DDNHVPPLEMIKLLCESVHSWLSSD-PKNIAVIHCMAGKG----RTGLMVCSYLVY-TGMSAEEALQLYAHK 187 (426)
Q Consensus 122 pD~~~P~l~~l~~~~~~i~~~L~~~-~~~~VvVHC~aG~G----RTGtviaayLl~-~g~s~~eAl~~~~~~ 187 (426)
.|.++.++..+..+|..+++-|+.. ..+..+|||.+.-. -++.+++||++. .|+++++|++.+...
T Consensus 39 ~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~ 110 (141)
T PF14671_consen 39 ADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASI 110 (141)
T ss_dssp S------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTT
T ss_pred CcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence 6999999999999999999999762 23568888876533 388999999986 689999999998655
No 46
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=96.74 E-value=0.0042 Score=55.37 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=58.7
Q ss_pred eecCCC--CCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhH--HHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Q 014325 119 YPFDDN--HVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTG--LMVCSYLVYTGMSAEEALQLYAHKRTTNNEG 194 (426)
Q Consensus 119 ~p~pD~--~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTG--tviaayLl~~g~s~~eAl~~~~~~R~~~~~~ 194 (426)
...||. .+|..+-+..+.+.+++|=. ..+++|||.+|+|||. +++++.-+...+...++-+.++..++..
T Consensus 65 I~~~~~g~~ap~e~Hv~~i~DF~~~wp~---~apllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~a--- 138 (172)
T COG5350 65 IAEPDDGWIAPGEAHVRAIIDFADEWPR---FAPLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYA--- 138 (172)
T ss_pred ccCCCccccCCCHHHHHHHHHHHhcCcc---ccceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCccc---
Confidence 344443 46777788888888899854 4689999999999974 4455666677788888877777776432
Q ss_pred CCCchHhHHHHHHHHHhc
Q 014325 195 VSIPSQRRYVGYWNNIIS 212 (426)
Q Consensus 195 v~~PSQ~ryl~yf~~ll~ 212 (426)
+| -.|-|.-+..+|.
T Consensus 139 --tP-N~RliaI~d~~l~ 153 (172)
T COG5350 139 --TP-NPRLIAIADAALG 153 (172)
T ss_pred --CC-ChhHHHHHHHHHh
Confidence 22 2356666666664
No 47
>PRK01415 hypothetical protein; Validated
Probab=91.07 E-value=1.2 Score=43.27 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred EEecCEEEecCCCccch---hhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHH
Q 014325 58 YITDRLLAMSFPAEHMR---AVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKL 134 (426)
Q Consensus 58 yIT~rIiam~~P~~~~e---~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~ 134 (426)
-+...|+.|+.|..... ..|-+ -+++.++++. ....|+++++...|....+.+ --.|++..+.+
T Consensus 91 r~k~eiV~~g~~~~~~~~~~g~~i~-p~e~~~ll~~---~~~vvIDVRn~~E~~~Ghi~g---------Ainip~~~f~e 157 (247)
T PRK01415 91 RLKKEIVAMNVDDLNVDLFKGEYIE-PKDWDEFITK---QDVIVIDTRNDYEVEVGTFKS---------AINPNTKTFKQ 157 (247)
T ss_pred EeeceEEecCCCCCCccccCccccC-HHHHHHHHhC---CCcEEEECCCHHHHhcCCcCC---------CCCCChHHHhh
Confidence 35678999998753321 22222 2467777753 346789986544444333332 22244555544
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 135 LCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 135 ~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
+-..+........+.+|+++|.+| .|+ ..+|++|...|.
T Consensus 158 ~~~~~~~~~~~~k~k~Iv~yCtgG-iRs-~kAa~~L~~~Gf 196 (247)
T PRK01415 158 FPAWVQQNQELLKGKKIAMVCTGG-IRC-EKSTSLLKSIGY 196 (247)
T ss_pred hHHHHhhhhhhcCCCeEEEECCCC-hHH-HHHHHHHHHcCC
Confidence 444333333334556899999888 465 556667765555
No 48
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=90.68 E-value=1.2 Score=36.24 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCch
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGR 161 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GR 161 (426)
+++.+.++ .....|+++++...|....+.+ -..+|+.+ +..+...+...+..+++.+++|+|..| .|
T Consensus 7 ~~l~~~~~---~~~~~iiDvR~~~e~~~ghi~g-A~~ip~~~--------~~~~~~~~~~~~~~~~~~~ivvyC~~G-~r 73 (101)
T cd01518 7 AEWNELLE---DPEVVLLDVRNDYEYDIGHFKG-AVNPDVDT--------FREFPFWLDENLDLLKGKKVLMYCTGG-IR 73 (101)
T ss_pred HHHHHHHc---CCCEEEEEcCChhhhhcCEecc-ccCCCccc--------HhHhHHHHHhhhhhcCCCEEEEECCCc-hh
Confidence 45555554 3456899997655554433332 22344432 222222232222224556899999877 57
Q ss_pred hHHHHHHHHHHcCC
Q 014325 162 TGLMVCSYLVYTGM 175 (426)
Q Consensus 162 TGtviaayLl~~g~ 175 (426)
++. +|.+|...|.
T Consensus 74 s~~-a~~~L~~~G~ 86 (101)
T cd01518 74 CEK-ASAYLKERGF 86 (101)
T ss_pred HHH-HHHHHHHhCC
Confidence 654 3445554555
No 49
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.17 E-value=1.7 Score=37.55 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=61.1
Q ss_pred cceeEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeecc--CCCCCCcc--------cccc-eEEeecC
Q 014325 54 LDMSYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCI--EETYDPEH--------FYSR-VERYPFD 122 (426)
Q Consensus 54 LDltyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~s--e~~y~~~~--------~~~~-v~~~p~p 122 (426)
+++..|++++.+.+-|... |+.++ +..+--.|+|.+- |..-.|.. -.|. +.++|.-
T Consensus 1 M~i~~I~d~lsVsgQi~~~----------D~~~i---aa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~ 67 (130)
T COG3453 1 MDIRRINDRLSVSGQISPA----------DIASI---AALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVT 67 (130)
T ss_pred CCceecccceeecCCCCHH----------HHHHH---HHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecC
Confidence 4677888999888877643 34333 2234446777752 11111210 0122 5566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 014325 123 DNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGMSAEEALQL 183 (426)
Q Consensus 123 D~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~s~~eAl~~ 183 (426)
... ++.+.+..+.+.+.+ .++||+.||+.|- |+-++-+.-.+..|++.+++.++
T Consensus 68 ~~~-iT~~dV~~f~~Al~e-----aegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a~ 121 (130)
T COG3453 68 GGG-ITEADVEAFQRALDE-----AEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEAL 121 (130)
T ss_pred CCC-CCHHHHHHHHHHHHH-----hCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHHH
Confidence 333 345566666666654 2479999999884 54343333333457777776543
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=88.81 E-value=4.1 Score=40.97 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=57.3
Q ss_pred eEEecCEEEecCC-C-ccchhhh-cCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHH
Q 014325 57 SYITDRLLAMSFP-A-EHMRAVY-RNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIK 133 (426)
Q Consensus 57 tyIT~rIiam~~P-~-~~~e~~y-rn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~ 133 (426)
.-+...|..++++ . .+..... .-..+++.+.|+. ....|++++....|....+.|. --+++..+.
T Consensus 89 ~~~~~eLv~~G~d~~v~~~~~~~~~is~~el~~~l~~---~~~vlIDVR~~~E~~~GhI~GA---------i~ip~~~~~ 156 (314)
T PRK00142 89 VKVRKEIVALGLDDDIDPLENVGTYLKPKEVNELLDD---PDVVFIDMRNDYEYEIGHFENA---------IEPDIETFR 156 (314)
T ss_pred eeeeeeeeecCCCCCCCccccCCcccCHHHHHHHhcC---CCeEEEECCCHHHHhcCcCCCC---------EeCCHHHhh
Confidence 4567788889985 2 2222111 1224566666643 3467899864433444333332 123344444
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 134 LLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 134 ~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
++...+.+.+...++.+|+|+|.+| .|+ ..++++|...|.
T Consensus 157 ~~~~~l~~~~~~~kdk~IvvyC~~G-~Rs-~~aa~~L~~~Gf 196 (314)
T PRK00142 157 EFPPWVEENLDPLKDKKVVMYCTGG-IRC-EKASAWMKHEGF 196 (314)
T ss_pred hhHHHHHHhcCCCCcCeEEEECCCC-cHH-HHHHHHHHHcCC
Confidence 4444444434334557899999877 465 445667766665
No 51
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=88.53 E-value=3.5 Score=34.72 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCCeEEEeeeccC-------CCCCCcccccceEEeecCC---------CCCCCHHHHHHHHHHHHHhhcc
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIE-------ETYDPEHFYSRVERYPFDD---------NHVPPLEMIKLLCESVHSWLSS 145 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se-------~~y~~~~~~~~v~~~p~pD---------~~~P~l~~l~~~~~~i~~~L~~ 145 (426)
+++.+.++. ....|+++++. ..|....+.+ ...+|+.+ +..|+.+.+.+++... ..
T Consensus 5 ~~l~~~l~~---~~~~ivDvR~~~~~~~~~~~~~~ghI~g-a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (122)
T cd01448 5 DWLAEHLDD---PDVRILDARWYLPDRDGRKEYLEGHIPG-AVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSL----GI 76 (122)
T ss_pred HHHHHHhCC---CCeEEEEeecCCCCCchhhHHhhCCCCC-CEEcChhhccccCCCCCCCCCCHHHHHHHHHHc----CC
Confidence 445555533 34679999765 3344333333 23344432 2234445444443321 22
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 146 DPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 146 ~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
+++.+|+|+|..| |+.+..++..|...|.
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l~~~G~ 105 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTLRYFGH 105 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHHHHcCC
Confidence 3456899999998 6666666666666665
No 52
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=0.87 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHH
Q 014325 147 PKNIAVIHCMAGKGRTGLMVCSYL 170 (426)
Q Consensus 147 ~~~~VvVHC~aG~GRTGtviaayL 170 (426)
.+..|+|||+.|+.||+-++|.-+
T Consensus 373 ~~~sVlVHCSDGWDRT~QlvsLA~ 396 (717)
T KOG4471|consen 373 ESRSVLVHCSDGWDRTAQLVSLAM 396 (717)
T ss_pred CCceEEEEcCCCccchHHHHHHHH
Confidence 457899999999999997775433
No 53
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=83.83 E-value=4.7 Score=42.60 Aligned_cols=129 Identities=22% Similarity=0.184 Sum_probs=74.6
Q ss_pred hhhHHhhhcCceeeeecCcc-cce-----eEEecCEEEecCCCccchhhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCC
Q 014325 34 FYIRNLVSKKRRRMLVEGYD-LDM-----SYITDRLLAMSFPAEHMRAVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETY 107 (426)
Q Consensus 34 ~~~r~~vs~~~~r~~~~g~~-LDl-----tyIT~rIiam~~P~~~~e~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y 107 (426)
.+++.||...+..-...+.. ++. .-+|..|.+......-.-. ...+.......-.|+++ ++...
T Consensus 261 ~lI~~LV~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ig~~~~~l~~~---------~~~~~~~~~~~~~vI~~-s~~~~ 330 (451)
T PF04179_consen 261 ELIAELVEEERSSSASSGSTQIDPSFNKIDPGTTGIYIGKISSNLAIS---------KAQLPDLESEFDCVINC-SESPT 330 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccCCCCeEEeccCCccccc---------hhhccccCCCcCEEEEc-CCCcc
Confidence 46778887655444333322 222 1246677777655411000 00011111222356776 55543
Q ss_pred C--CcccccceEEeecCCCCCCC--HH-HHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH
Q 014325 108 D--PEHFYSRVERYPFDDNHVPP--LE-MIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY 172 (426)
Q Consensus 108 ~--~~~~~~~v~~~p~pD~~~P~--l~-~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~ 172 (426)
. ...-...+++++.+.+..-+ |. .|.+++..+..+|..+++..++|+|..|+..+.-++.|.|+.
T Consensus 331 ~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~ 400 (451)
T PF04179_consen 331 PKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAILCK 400 (451)
T ss_pred cccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHH
Confidence 2 12222348889998776653 33 666788888888887677899999999999887777666653
No 54
>PRK05320 rhodanese superfamily protein; Provisional
Probab=83.51 E-value=4.9 Score=39.23 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=54.8
Q ss_pred EecCEEEecCCCccch-hhh-cCCHHHHHHHHHhhc---CCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHH
Q 014325 59 ITDRLLAMSFPAEHMR-AVY-RNPLWQVKAVLDMRH---QEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIK 133 (426)
Q Consensus 59 IT~rIiam~~P~~~~e-~~y-rn~i~~v~~~L~~kh---~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~ 133 (426)
+-+.|..++.|..... ... .-..+++.++++..+ .....|+++++...|....+.+ ---++++.+.
T Consensus 90 ~k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~G---------AiniPl~~f~ 160 (257)
T PRK05320 90 LKREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDG---------ALDYRIDKFT 160 (257)
T ss_pred hhhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCC---------CEeCChhHhh
Confidence 3345666666643211 100 112356667665532 1246788986544454433332 2223455555
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 134 LLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 134 ~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
++...+..++....+.+|+++|.+|. |+ ..++.+|...|.
T Consensus 161 ~~~~~l~~~~~~~kdk~IvvyC~~G~-Rs-~~Aa~~L~~~Gf 200 (257)
T PRK05320 161 EFPEALAAHRADLAGKTVVSFCTGGI-RC-EKAAIHMQEVGI 200 (257)
T ss_pred hhHHHHHhhhhhcCCCeEEEECCCCH-HH-HHHHHHHHHcCC
Confidence 55444444433224468999999883 55 445666665555
No 55
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=81.08 E-value=3.2 Score=42.47 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHH
Q 014325 147 PKNIAVIHCMAGKGRTGLMVCSYLVY 172 (426)
Q Consensus 147 ~~~~VvVHC~aG~GRTGtviaayLl~ 172 (426)
.+..|+|||..|+.||+.+++.-.+.
T Consensus 230 ~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp T--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred cCceEEEEcCCCCcccHHHHHHHHHH
Confidence 45789999999999998876654443
No 56
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=77.39 E-value=8.2 Score=32.54 Aligned_cols=85 Identities=8% Similarity=0.085 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCC-CcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCc
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYD-PEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKG 160 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~-~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~G 160 (426)
+++.+.|++ +....|++++++..|. ...+.+ -..+|+.+...+..+ ..+...+.... +++.+++|+|..|.
T Consensus 4 ~el~~~l~~--~~~~~vIDvR~~~e~~~~ghIpg-A~~ip~~~~~~~~~~--~~~~~~l~~~~--~~~~~ivv~C~~G~- 75 (117)
T cd01522 4 AEAWALLQA--DPQAVLVDVRTEAEWKFVGGVPD-AVHVAWQVYPDMEIN--PNFLAELEEKV--GKDRPVLLLCRSGN- 75 (117)
T ss_pred HHHHHHHHh--CCCeEEEECCCHHHHhcccCCCC-ceecchhhccccccC--HHHHHHHHhhC--CCCCeEEEEcCCCc-
Confidence 466666654 2457899997666666 544443 334555432211111 11222222222 34568999998873
Q ss_pred hhHHHHHHHHHHcCC
Q 014325 161 RTGLMVCSYLVYTGM 175 (426)
Q Consensus 161 RTGtviaayLl~~g~ 175 (426)
|+.. ++..|...|.
T Consensus 76 rs~~-aa~~L~~~G~ 89 (117)
T cd01522 76 RSIA-AAEAAAQAGF 89 (117)
T ss_pred cHHH-HHHHHHHCCC
Confidence 5543 3444444444
No 57
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=77.27 E-value=7.8 Score=31.39 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCC----CCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCC
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDD----NHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMA 157 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD----~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~a 157 (426)
+++.+.+ ....+.|++.++...|....+.+ -.++||+. ......+.+.........-+ +....|+++|..
T Consensus 3 ~el~~~l---~~~~~~liD~R~~~~~~~~hI~g-a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~yc~~ 76 (113)
T PF00581_consen 3 EELKEML---ENESVLLIDVRSPEEYERGHIPG-AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKI--DKDKDIVFYCSS 76 (113)
T ss_dssp HHHHHHH---TTTTEEEEEESSHHHHHHSBETT-EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGS--TTTSEEEEEESS
T ss_pred HHHHhhh---hCCCeEEEEeCCHHHHHcCCCCC-Cccccccccccccccccccccccccccccccc--cccccceeeeec
Confidence 4566666 45678999997665565544443 36778743 33333334444433333222 344579999955
Q ss_pred CCchhHHHHHH
Q 014325 158 GKGRTGLMVCS 168 (426)
Q Consensus 158 G~GRTGtviaa 168 (426)
|. |++..+++
T Consensus 77 ~~-~~~~~~~~ 86 (113)
T PF00581_consen 77 GW-RSGSAAAA 86 (113)
T ss_dssp SC-HHHHHHHH
T ss_pred cc-ccchhHHH
Confidence 44 44444433
No 58
>PLN02160 thiosulfate sulfurtransferase
Probab=75.78 E-value=6 Score=34.59 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccc-eEEeecCCCC----CCCHHHHHHHHHHHHHhhccCCCCeEEEEcC
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSR-VERYPFDDNH----VPPLEMIKLLCESVHSWLSSDPKNIAVIHCM 156 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~-v~~~p~pD~~----~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~ 156 (426)
+++.+.++. + ..|+++++...|....+.+- ...+||.+.. ..+.+ +...+...+ +++.+++|||.
T Consensus 20 ~e~~~~~~~---~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~----~~~~~~~~~--~~~~~IivyC~ 89 (136)
T PLN02160 20 SQAKTLLQS---G-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQE----FLEQVSSLL--NPADDILVGCQ 89 (136)
T ss_pred HHHHHHHhC---C-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHH----HHHHHHhcc--CCCCcEEEECC
Confidence 466666643 2 36889976666655444432 2456663321 11111 222222222 34468999998
Q ss_pred CCCchhHHHHHHHHHHcCC
Q 014325 157 AGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 157 aG~GRTGtviaayLl~~g~ 175 (426)
.| .||+.. +..|...|.
T Consensus 90 sG-~RS~~A-a~~L~~~G~ 106 (136)
T PLN02160 90 SG-ARSLKA-TTELVAAGY 106 (136)
T ss_pred Cc-HHHHHH-HHHHHHcCC
Confidence 88 677544 444444454
No 59
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=75.06 E-value=20 Score=29.45 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCc
Q 014325 81 LWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKG 160 (426)
Q Consensus 81 i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~G 160 (426)
.+++.+.++. +....|+++++...|....+.+- ..+| +..+... + .++..+++.+++|+|..|.
T Consensus 14 ~~~l~~~~~~--~~~~~liDvR~~~e~~~ghIpga-inip--------~~~l~~~---~-~~l~~~~~~~ivv~C~~G~- 77 (109)
T cd01533 14 ADELAALQAR--GAPLVVLDGRRFDEYRKMTIPGS-VSCP--------GAELVLR---V-GELAPDPRTPIVVNCAGRT- 77 (109)
T ss_pred HHHHHHHHhc--CCCcEEEeCCCHHHHhcCcCCCc-eeCC--------HHHHHHH---H-HhcCCCCCCeEEEECCCCc-
Confidence 3566666643 23467889965444543222221 1222 2333222 2 2232234568999998885
Q ss_pred hhHHHHHHHHHHcCC
Q 014325 161 RTGLMVCSYLVYTGM 175 (426)
Q Consensus 161 RTGtviaayLl~~g~ 175 (426)
|+ ..++..|...|.
T Consensus 78 rs-~~a~~~L~~~G~ 91 (109)
T cd01533 78 RS-IIGAQSLINAGL 91 (109)
T ss_pred hH-HHHHHHHHHCCC
Confidence 66 344555555565
No 60
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=72.10 E-value=13 Score=30.06 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCC---CCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCC
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDN---HVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAG 158 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~---~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG 158 (426)
+++.+.++ ......|++++++..|....+.+ -..+|+.+. ..++.+.+.++ ..++....+.+|+|+|..|
T Consensus 4 ~~~~~~l~--~~~~~~iiDvR~~~e~~~ghIpg-A~~ip~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ivv~c~~g 76 (106)
T cd01519 4 EEVKNLPN--PHPNKVLIDVREPEELKTGKIPG-AINIPLSSLPDALALSEEEFEKK----YGFPKPSKDKELIFYCKAG 76 (106)
T ss_pred HHHHHhcC--CCCCEEEEECCCHHHHhcCcCCC-cEEechHHhhhhhCCCHHHHHHH----hcccCCCCCCeEEEECCCc
Confidence 45555553 12447899997655555433333 234454321 11222222222 1122223456899999887
Q ss_pred CchhHHHHHHHHHHcCC
Q 014325 159 KGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 159 ~GRTGtviaayLl~~g~ 175 (426)
. |+ ..++..|...|.
T Consensus 77 ~-~s-~~~~~~l~~~G~ 91 (106)
T cd01519 77 V-RS-KAAAELARSLGY 91 (106)
T ss_pred H-HH-HHHHHHHHHcCC
Confidence 5 54 344445545565
No 61
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=71.83 E-value=20 Score=28.88 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCch
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGR 161 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GR 161 (426)
+++.+.++. +....|++++++..|....+.+- ..+|+.+.. ..+..........+ +++.+++|+|..|. |
T Consensus 4 ~el~~~l~~--~~~~~liDvR~~~e~~~ghi~ga-~~ip~~~~~----~~~~~~~~~~~~~~--~~~~~ivv~C~~G~-r 73 (100)
T cd01523 4 EDLYARLLA--GQPLFILDVRNESDYERWKIDGE-NNTPYFDPY----FDFLEIEEDILDQL--PDDQEVTVICAKEG-S 73 (100)
T ss_pred HHHHHHHHc--CCCcEEEEeCCHHHHhhcccCCC-cccccccch----HHHHHhhHHHHhhC--CCCCeEEEEcCCCC-c
Confidence 456666643 23467899976555554333321 223332210 11111011111222 24468999999884 6
Q ss_pred hHHHHHHHHHHcCC
Q 014325 162 TGLMVCSYLVYTGM 175 (426)
Q Consensus 162 TGtviaayLl~~g~ 175 (426)
| ..++..|...|.
T Consensus 74 s-~~aa~~L~~~G~ 86 (100)
T cd01523 74 S-QFVAELLAERGY 86 (100)
T ss_pred H-HHHHHHHHHcCc
Confidence 6 445555555554
No 62
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=71.18 E-value=9.5 Score=38.01 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=65.7
Q ss_pred EecCEEEecCCCccch----hhhcCCHHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHH
Q 014325 59 ITDRLLAMSFPAEHMR----AVYRNPLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKL 134 (426)
Q Consensus 59 IT~rIiam~~P~~~~e----~~yrn~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~ 134 (426)
+-.+|++|+.|.+-.+ +.|-.+ ++.-++|.. ....|++.+..-.|+...|.| ---|+.+.+.+
T Consensus 92 ~kkEIV~lg~~ddv~p~~~vG~yl~p-~~wn~~l~D---~~~vviDtRN~YE~~iG~F~g---------Av~p~~~tFre 158 (308)
T COG1054 92 LKKEIVALGVEDDVDPLENVGTYLSP-KDWNELLSD---PDVVVIDTRNDYEVAIGHFEG---------AVEPDIETFRE 158 (308)
T ss_pred ehhhheecCCCCCcCccccccCccCH-HHHHHHhcC---CCeEEEEcCcceeEeeeeecC---------ccCCChhhhhh
Confidence 3468999999973322 455444 455555543 345677764322233444443 33477888888
Q ss_pred HHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 135 LCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 135 ~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
|-..+.+++....+.+|++-|.+|+- . =-+++||+..|.
T Consensus 159 fP~~v~~~~~~~~~KkVvmyCTGGIR-C-EKas~~m~~~GF 197 (308)
T COG1054 159 FPAWVEENLDLLKDKKVVMYCTGGIR-C-EKASAWMKENGF 197 (308)
T ss_pred hHHHHHHHHHhccCCcEEEEcCCcee-e-hhhHHHHHHhcc
Confidence 88888887766556689999999983 2 445678887776
No 63
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=70.21 E-value=43 Score=27.74 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHHHHhhc---CCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCC
Q 014325 82 WQVKAVLDMRH---QEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAG 158 (426)
Q Consensus 82 ~~v~~~L~~kh---~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG 158 (426)
+++.+.++... +....|++++.. .|....+.+ -.++|+. .+......+.+.+......+|++||..|
T Consensus 7 ~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipg-Ai~ip~~--------~~~~~~~~~~~~~~~~~~~~iv~~C~~~ 76 (113)
T cd01443 7 EELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKG-SINLPAQ--------SCYQTLPQVYALFSLAGVKLAIFYCGSS 76 (113)
T ss_pred HHHHHHHhCCccccCCcEEEEECCch-hcCCCcccC-ceecchh--------HHHHHHHHHHHHhhhcCCCEEEEECCCC
Confidence 56777765420 135678998644 444333322 2233332 2222222222223223346899999976
Q ss_pred CchhHH
Q 014325 159 KGRTGL 164 (426)
Q Consensus 159 ~GRTGt 164 (426)
-.|+..
T Consensus 77 g~rs~~ 82 (113)
T cd01443 77 QGRGPR 82 (113)
T ss_pred CcccHH
Confidence 566544
No 64
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=68.96 E-value=17 Score=29.03 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHH
Q 014325 86 AVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLM 165 (426)
Q Consensus 86 ~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtv 165 (426)
+.|+. +.....|++++++..|....+.+- ..+|+.+. .+....+ ..+-...++.+|+|+|..| +|++.
T Consensus 4 ~~l~~-~~~~~~iiDvR~~~~~~~~hIpgA-~~ip~~~~-~~~~~~~-------~~~~~~~~~~~ivv~c~~g-~~s~~- 71 (96)
T cd01529 4 DWLGE-HEPGTALLDVRAEDEYAAGHLPGK-RSIPGAAL-VLRSQEL-------QALEAPGRATRYVLTCDGS-LLARF- 71 (96)
T ss_pred HHHhc-CCCCeEEEeCCCHHHHcCCCCCCc-EeCCHHHh-cCCHHHH-------HHhhcCCCCCCEEEEeCCh-HHHHH-
Confidence 44544 344578999976555554433332 23343211 1111111 1111123456799999765 46644
Q ss_pred HHHHHHHcCC
Q 014325 166 VCSYLVYTGM 175 (426)
Q Consensus 166 iaayLl~~g~ 175 (426)
++.+|...|.
T Consensus 72 ~~~~l~~~G~ 81 (96)
T cd01529 72 AAQELLALGG 81 (96)
T ss_pred HHHHHHHcCC
Confidence 3445554554
No 65
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=67.68 E-value=25 Score=28.39 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCch
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGR 161 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GR 161 (426)
+++.+.++..+ ....|+++++...|....+.|- ..+| ...+......+..+ +++.++++.|..| .|
T Consensus 5 ~~l~~~~~~~~-~~~~iiDvR~~~e~~~~hI~ga-~~ip--------~~~~~~~~~~~~~~---~~~~~vv~~c~~g-~r 70 (101)
T cd01528 5 AELAEWLADER-EEPVLIDVREPEELEIAFLPGF-LHLP--------MSEIPERSKELDSD---NPDKDIVVLCHHG-GR 70 (101)
T ss_pred HHHHHHHhcCC-CCCEEEECCCHHHHhcCcCCCC-EecC--------HHHHHHHHHHhccc---CCCCeEEEEeCCC-ch
Confidence 45666665422 2346889865444443333322 2233 23333333322221 3456899999887 46
Q ss_pred hHHHHHHHHHHcCC
Q 014325 162 TGLMVCSYLVYTGM 175 (426)
Q Consensus 162 TGtviaayLl~~g~ 175 (426)
+ ..++.+|...|.
T Consensus 71 s-~~~~~~l~~~G~ 83 (101)
T cd01528 71 S-MQVAQWLLRQGF 83 (101)
T ss_pred H-HHHHHHHHHcCC
Confidence 5 334545544554
No 66
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=62.22 E-value=16 Score=29.60 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCC--CCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCC
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHV--PPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGK 159 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~--P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~ 159 (426)
+++.+.++.. ...+.|+++++...|....+.+ -.++||.+... +.+..+.. . .++....+.+|+|+|..|.
T Consensus 4 ~~l~~~l~~~-~~~~~liDvR~~~e~~~ghIpg-A~~ip~~~~~~~~~~~~~~~~-~----~~~~~~~~~~vv~~c~~g~ 76 (105)
T cd01525 4 YDVIRLLDNS-PAKLAAVDIRSSPDFRRGHIEG-SINIPFSSVFLKEGELEQLPT-V----PRLENYKGKIIVIVSHSHK 76 (105)
T ss_pred HHHHHHHhCC-CCCeEEEECCCHHHHhCCccCC-CEeCCHHHhcccccccccccc-h----HHHHhhcCCeEEEEeCCCc
Confidence 5667776532 2357899997544454433333 23455543211 11111110 0 1222222467999998876
Q ss_pred chhHHHHHHHHHHcCC
Q 014325 160 GRTGLMVCSYLVYTGM 175 (426)
Q Consensus 160 GRTGtviaayLl~~g~ 175 (426)
|++.+ |..|...|.
T Consensus 77 -~s~~~-a~~L~~~G~ 90 (105)
T cd01525 77 -HAALF-AAFLVKCGV 90 (105)
T ss_pred -cHHHH-HHHHHHcCC
Confidence 55443 334444454
No 67
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=60.59 E-value=92 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=19.0
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 146 DPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 146 ~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
+++.+|++.|..|..|+.. ++..|...|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~-aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN-AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH-HHHHHHhcCC
Confidence 4557899999988777765 3333334454
No 68
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=60.22 E-value=39 Score=28.68 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHHHHHHHhhc---CCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcC-C
Q 014325 82 WQVKAVLDMRH---QEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCM-A 157 (426)
Q Consensus 82 ~~v~~~L~~kh---~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~-a 157 (426)
+++.+.++... ...+.|++++....|......+ -.++|+. +.+.........-+..+.+.+|+|||. +
T Consensus 7 ~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~g-A~~ip~~-------~~l~~~~~~~~~~~~~~~~~~vv~yC~~s 78 (121)
T cd01530 7 ETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKG-AVNLSTK-------DELEEFFLDKPGVASKKKRRVLIFHCEFS 78 (121)
T ss_pred HHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCC-CEeCCcH-------HHHHHHHHHhhcccccCCCCEEEEECCCc
Confidence 45666665421 2457899996544444332222 1223321 122221111000011245578999997 4
Q ss_pred CCchhHHHHHHHH
Q 014325 158 GKGRTGLMVCSYL 170 (426)
Q Consensus 158 G~GRTGtviaayL 170 (426)
| .|++. +|.+|
T Consensus 79 g-~rs~~-aa~~L 89 (121)
T cd01530 79 S-KRGPR-MARHL 89 (121)
T ss_pred c-ccHHH-HHHHH
Confidence 4 56544 44444
No 69
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=55.95 E-value=19 Score=39.05 Aligned_cols=21 Identities=24% Similarity=0.367 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHHH
Q 014325 148 KNIAVIHCMAGKGRTGLMVCS 168 (426)
Q Consensus 148 ~~~VvVHC~aG~GRTGtviaa 168 (426)
+-.|||||..|+.||..+++.
T Consensus 344 ~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 344 GASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred CCeEEEEccCCcchhHHHHHH
Confidence 357999999999999877654
No 70
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=54.80 E-value=39 Score=26.09 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=36.2
Q ss_pred CeEEEeeeccCCCCCCcccccceEEeecCCCCCC--CHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHH
Q 014325 94 EHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVP--PLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLV 171 (426)
Q Consensus 94 ~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P--~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl 171 (426)
..+.|+++++...|....+.+- .++|+.+.... ..... .+ ..........++..++|+|..|. |+ ..++.+|.
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga-~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~iv~~c~~g~-~a-~~~~~~l~ 77 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGA-VNIPLSELLDRRGELDIL-EF-EELLKRLGLDKDKPVVVYCRSGN-RS-AKAAWLLR 77 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCc-eeCCHHHhccCCCCcCHH-HH-HHHHHHcCCCCCCeEEEEeCCCc-HH-HHHHHHHH
Confidence 3467888876555655444432 23444322111 11111 11 22222223345678999995433 43 44454554
Q ss_pred HcCC
Q 014325 172 YTGM 175 (426)
Q Consensus 172 ~~g~ 175 (426)
..|.
T Consensus 78 ~~G~ 81 (100)
T smart00450 78 ELGF 81 (100)
T ss_pred HcCC
Confidence 4554
No 71
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=48.25 E-value=1.5e+02 Score=24.26 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCc
Q 014325 81 LWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKG 160 (426)
Q Consensus 81 i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~G 160 (426)
.+++.+.+.... ....|+++++. .|....+.+ -.++|++ .+......+..-+..+.+..++++|..+-.
T Consensus 6 ~~~l~~~~~~~~-~~~~iiDvR~~-e~~~~hi~g-A~~ip~~--------~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~ 74 (113)
T cd01531 6 PAQLKGWIRNGR-PPFQVVDVRDE-DYAGGHIKG-SWHYPST--------RFKAQLNQLVQLLSGSKKDTVVFHCALSQV 74 (113)
T ss_pred HHHHHHHHHcCC-CCEEEEEcCCc-ccCCCcCCC-CEecCHH--------HHhhCHHHHHHHHhcCCCCeEEEEeecCCc
Confidence 356666664321 34578999755 554433332 1233322 222222222221211334689999984434
Q ss_pred hhHH
Q 014325 161 RTGL 164 (426)
Q Consensus 161 RTGt 164 (426)
|+..
T Consensus 75 r~~~ 78 (113)
T cd01531 75 RGPS 78 (113)
T ss_pred chHH
Confidence 5544
No 72
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=46.54 E-value=1.1e+02 Score=25.94 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecC
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFD 122 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~p 122 (426)
+++.+.++ ....|++++++..|....+.+ -.++||.
T Consensus 4 ~el~~~l~----~~~~iiDvR~~~e~~~ghIpg-Ainip~~ 39 (128)
T cd01520 4 EDLLALRK----ADGPLIDVRSPKEFFEGHLPG-AINLPLL 39 (128)
T ss_pred HHHHHHHh----cCCEEEECCCHHHhccCcCCC-cEEccCC
Confidence 45566654 234689997655565544443 2457774
No 73
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=46.49 E-value=1.2e+02 Score=25.37 Aligned_cols=80 Identities=10% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHH-----HHhhccCCCCeEEEEcC
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESV-----HSWLSSDPKNIAVIHCM 156 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i-----~~~L~~~~~~~VvVHC~ 156 (426)
+++.+.+++ +....|+++++...|....+.+- ..+|+ ..+......+ ..|. .+++.+++|+|.
T Consensus 13 ~el~~~~~~--~~~~~ivDvR~~~e~~~~hIpga-i~ip~--------~~~~~~~~~~~~~~~~~~~-~~~~~~ivv~C~ 80 (122)
T cd01526 13 KDYKNILQA--GKKHVLLDVRPKVHFEICRLPEA-INIPL--------SELLSKAAELKSLQELPLD-NDKDSPIYVVCR 80 (122)
T ss_pred HHHHHHHhC--CCCeEEEEcCCHHHhhcccCCCC-eEccH--------HHHhhhhhhhhhhhhcccc-cCCCCcEEEECC
Confidence 455555533 24567999976555554333332 12332 2221111111 1122 134568999998
Q ss_pred CCCchhHHHHHHHHHHcCC
Q 014325 157 AGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 157 aG~GRTGtviaayLl~~g~ 175 (426)
.|. |+. .+|..|...|.
T Consensus 81 ~G~-rs~-~aa~~L~~~G~ 97 (122)
T cd01526 81 RGN-DSQ-TAVRKLKELGL 97 (122)
T ss_pred CCC-cHH-HHHHHHHHcCC
Confidence 884 654 44445544555
No 74
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=45.73 E-value=32 Score=26.25 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHH
Q 014325 93 QEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVY 172 (426)
Q Consensus 93 ~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~ 172 (426)
...+.|++++++..|....+.+. ..+||. +..... ......++..|+|+|..|. .+..++..|..
T Consensus 8 ~~~~~iiD~R~~~~~~~~~i~ga-~~~~~~-------~~~~~~-----~~~~~~~~~~vv~~c~~~~--~a~~~~~~l~~ 72 (89)
T cd00158 8 DEDAVLLDVREPEEYAAGHIPGA-INIPLS-------ELEERA-----ALLELDKDKPIVVYCRSGN--RSARAAKLLRK 72 (89)
T ss_pred CCCeEEEECCCHHHHhccccCCC-EecchH-------HHhhHH-----HhhccCCCCeEEEEeCCCc--hHHHHHHHHHH
Confidence 45678999975555544333322 223321 111111 1112234578999998852 33455555544
Q ss_pred cC
Q 014325 173 TG 174 (426)
Q Consensus 173 ~g 174 (426)
.|
T Consensus 73 ~G 74 (89)
T cd00158 73 AG 74 (89)
T ss_pred hC
Confidence 44
No 75
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=41.90 E-value=70 Score=32.94 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=40.8
Q ss_pred CHHHHHHHHHhhcCCeEEEeeeccCCCCCCccccc--ceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCC
Q 014325 80 PLWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYS--RVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMA 157 (426)
Q Consensus 80 ~i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~--~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~a 157 (426)
..+++.++++. +...++++++...|....+.+ ...++| +..+.+....+..+ ...++.+++|||..
T Consensus 274 ~~~el~~~l~~---~~~~lIDVR~~~E~~~ghI~~~~gAinIP--------l~~l~~~~~~~~~l-~~~~~~~Ivv~C~s 341 (370)
T PRK05600 274 DTTSLIDATLN---GSATLLDVREPHEVLLKDLPEGGASLKLP--------LSAITDDADILHAL-SPIDGDNVVVYCAS 341 (370)
T ss_pred CHHHHHHHHhc---CCeEEEECCCHHHhhhccCCCCCccEeCc--------HHHhhcchhhhhhc-cccCCCcEEEECCC
Confidence 34666666643 234688997555554333321 112222 33332211112222 22233489999999
Q ss_pred CCchhHHHHHHHHHHcCC
Q 014325 158 GKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 158 G~GRTGtviaayLl~~g~ 175 (426)
| .||. .+|.+|...|.
T Consensus 342 G-~RS~-~Aa~~L~~~G~ 357 (370)
T PRK05600 342 G-IRSA-DFIEKYSHLGH 357 (370)
T ss_pred C-hhHH-HHHHHHHHcCC
Confidence 9 4654 45566655554
No 76
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=39.56 E-value=1.6e+02 Score=23.86 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCch
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGR 161 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GR 161 (426)
+++.+.++. +...|+++++...|....+.+- .++| +..+..++ .++ +.+.+++|+|..|. |
T Consensus 10 ~el~~~l~~---~~~~ivDvR~~~e~~~ghi~gA-~~ip--------~~~l~~~~----~~~--~~~~~ivv~c~~g~-~ 70 (108)
T PRK00162 10 EQAHQKLQE---GGAVLVDIRDPQSFAMGHAPGA-FHLT--------NDSLGAFM----RQA--DFDTPVMVMCYHGN-S 70 (108)
T ss_pred HHHHHHHHc---CCCEEEEcCCHHHHhcCCCCCC-eECC--------HHHHHHHH----Hhc--CCCCCEEEEeCCCC-C
Confidence 456666543 2367889965444443222221 1222 23333222 223 23467999998775 3
Q ss_pred hHHHHHHHHHHcCC
Q 014325 162 TGLMVCSYLVYTGM 175 (426)
Q Consensus 162 TGtviaayLl~~g~ 175 (426)
+ ..++..|...|.
T Consensus 71 s-~~a~~~L~~~G~ 83 (108)
T PRK00162 71 S-QGAAQYLLQQGF 83 (108)
T ss_pred H-HHHHHHHHHCCc
Confidence 3 444445544554
No 77
>PRK07411 hypothetical protein; Validated
Probab=33.94 E-value=91 Score=32.31 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCc
Q 014325 81 LWQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKG 160 (426)
Q Consensus 81 i~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~G 160 (426)
.+++.+.++.. .....|+++++...|....+.+- ..+||++..... ....+.++. ++.+++|+|..|.
T Consensus 286 ~~el~~~l~~~-~~~~vlIDVR~~~E~~~ghIpGA-iniP~~~l~~~~------~~~~l~~l~---~d~~IVvyC~~G~- 353 (390)
T PRK07411 286 VTELKALLDSG-ADDFVLIDVRNPNEYEIARIPGS-VLVPLPDIENGP------GVEKVKELL---NGHRLIAHCKMGG- 353 (390)
T ss_pred HHHHHHHHhCC-CCCeEEEECCCHHHhccCcCCCC-EEccHHHhhccc------chHHHhhcC---CCCeEEEECCCCH-
Confidence 45666666432 12567899975555655444432 346655432110 012222222 3468999998765
Q ss_pred hhHHHHHHHHHHcCC
Q 014325 161 RTGLMVCSYLVYTGM 175 (426)
Q Consensus 161 RTGtviaayLl~~g~ 175 (426)
||.. +|..|...|.
T Consensus 354 RS~~-aa~~L~~~G~ 367 (390)
T PRK07411 354 RSAK-ALGILKEAGI 367 (390)
T ss_pred HHHH-HHHHHHHcCC
Confidence 6644 4555555565
No 78
>smart00400 ZnF_CHCC zinc finger.
Probab=32.85 E-value=46 Score=24.16 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.5
Q ss_pred EEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 014325 152 VIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLY 184 (426)
Q Consensus 152 vVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~ 184 (426)
..||.+ -|+.|-+|..+..+.|.+..||++.+
T Consensus 23 ~~~Cf~-cg~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 589985 46778888888888899999999876
No 79
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=32.19 E-value=2.4e+02 Score=21.88 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=16.4
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 147 PKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 147 ~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
.+.+++|+|..|. .+..++..|...|.
T Consensus 55 ~~~~ivv~c~~g~--~s~~a~~~l~~~G~ 81 (96)
T cd01444 55 RDRPVVVYCYHGN--SSAQLAQALREAGF 81 (96)
T ss_pred CCCCEEEEeCCCC--hHHHHHHHHHHcCC
Confidence 3468999999543 33445555555554
No 80
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=30.55 E-value=1.6e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=16.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 147 PKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 147 ~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
++.+|+++|..|. |++. ++..|...|.
T Consensus 77 ~~~~iv~yc~~g~-~s~~-~~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSGV-TACV-LLLALELLGY 103 (118)
T ss_pred CCCCEEEECCcHH-HHHH-HHHHHHHcCC
Confidence 4568999998863 5443 3334434454
No 81
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=30.31 E-value=2.7e+02 Score=21.87 Aligned_cols=78 Identities=14% Similarity=0.116 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCch
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGR 161 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GR 161 (426)
+++.+.++.. ...+.++++++...|....+.+- .++|+ ..+.. .+. ++....+.+|+++|..|. |
T Consensus 4 ~~l~~~~~~~-~~~~~liDvR~~~e~~~ghipga-~~ip~--------~~l~~---~~~-~~~~~~~~~iv~~c~~G~-r 68 (95)
T cd01534 4 AELARWAAEG-DRTVYRFDVRTPEEYEAGHLPGF-RHTPG--------GQLVQ---ETD-HFAPVRGARIVLADDDGV-R 68 (95)
T ss_pred HHHHHHHHcC-CCCeEEEECCCHHHHHhCCCCCc-EeCCH--------HHHHH---HHH-HhcccCCCeEEEECCCCC-h
Confidence 4666666542 23567889975555554333332 22332 22211 111 222223468999998874 4
Q ss_pred hHHHHHHHHHHcCC
Q 014325 162 TGLMVCSYLVYTGM 175 (426)
Q Consensus 162 TGtviaayLl~~g~ 175 (426)
+ ..+|.+|...|.
T Consensus 69 s-~~aa~~L~~~G~ 81 (95)
T cd01534 69 A-DMTASWLAQMGW 81 (95)
T ss_pred H-HHHHHHHHHcCC
Confidence 4 344555544454
No 82
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=30.19 E-value=1.5e+02 Score=26.07 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=32.8
Q ss_pred eEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCchhHHHHHHHHHHcC
Q 014325 95 HYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYTG 174 (426)
Q Consensus 95 ~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GRTGtviaayLl~~g 174 (426)
...|++++++..|......|-+ ++ +.+.+... +.+ + .++.+|+|+|..| ..+..+|..|...|
T Consensus 11 ~~~ivDvR~~~e~~~gHIpgAi-~~--------~~~~l~~~---l~~-l--~~~~~vVv~c~~g--~~a~~aa~~L~~~G 73 (145)
T cd01535 11 QTAVVDVTASANYVKRHIPGAW-WV--------LRAQLAQA---LEK-L--PAAERYVLTCGSS--LLARFAAADLAALT 73 (145)
T ss_pred CeEEEECCCHHHHHcCCCCCce-eC--------CHHHHHHH---HHh-c--CCCCCEEEEeCCC--hHHHHHHHHHHHcC
Confidence 4689999755445443333321 11 12333222 222 2 2346899999874 44455566665444
Q ss_pred C
Q 014325 175 M 175 (426)
Q Consensus 175 ~ 175 (426)
.
T Consensus 74 ~ 74 (145)
T cd01535 74 V 74 (145)
T ss_pred C
Confidence 3
No 83
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=30.02 E-value=2.7e+02 Score=21.67 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=15.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHHcC
Q 014325 147 PKNIAVIHCMAGKGRTGLMVCSYLVYTG 174 (426)
Q Consensus 147 ~~~~VvVHC~aG~GRTGtviaayLl~~g 174 (426)
++.++++.|..|. | +..++..|...|
T Consensus 50 ~~~~vvl~c~~g~-~-a~~~a~~L~~~G 75 (90)
T cd01524 50 KDKEIIVYCAVGL-R-GYIAARILTQNG 75 (90)
T ss_pred CCCcEEEEcCCCh-h-HHHHHHHHHHCC
Confidence 3467999998752 3 344444444444
No 84
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=28.92 E-value=2.6e+02 Score=27.94 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCeEEEeeeccCCCCCCc-------ccccc---eEEeecC-----CCCCCCHHHHHHHHHHHHHhhcc
Q 014325 81 LWQVKAVLDMRHQEHYKVYNLCIEETYDPE-------HFYSR---VERYPFD-----DNHVPPLEMIKLLCESVHSWLSS 145 (426)
Q Consensus 81 i~~v~~~L~~kh~~~y~V~NL~se~~y~~~-------~~~~~---v~~~p~p-----D~~~P~l~~l~~~~~~i~~~L~~ 145 (426)
.++|.+.++ ...+.|++.++...|.-. ...|+ -.++||. ++..++.+.|.+++... .-
T Consensus 194 ~~~v~~~~~---~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~----gi 266 (320)
T PLN02723 194 LEQVKKNIE---DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQE----GI 266 (320)
T ss_pred HHHHHHhhc---CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhc----CC
Confidence 455655543 234678888765445211 11222 2456663 23345555555443321 11
Q ss_pred CCCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 146 DPKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 146 ~~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
.++..|+++|..|. ++.+++..|-..|.
T Consensus 267 ~~~~~iv~yC~sG~--~A~~~~~~L~~~G~ 294 (320)
T PLN02723 267 SLDSPIVASCGTGV--TACILALGLHRLGK 294 (320)
T ss_pred CCCCCEEEECCcHH--HHHHHHHHHHHcCC
Confidence 34568999997753 34444444433454
No 85
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=28.51 E-value=2e+02 Score=22.85 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 147 PKNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 147 ~~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
.+.+++|+|..|. || ..+|.+|...|.
T Consensus 60 ~~~~ivv~C~~G~-rS-~~aa~~L~~~G~ 86 (110)
T COG0607 60 DDDPIVVYCASGV-RS-AAAAAALKLAGF 86 (110)
T ss_pred CCCeEEEEeCCCC-Ch-HHHHHHHHHcCC
Confidence 4578999999885 44 556666666665
No 86
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=26.88 E-value=96 Score=24.54 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 148 KNIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 148 ~~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
+.+++|.|..|...++..++..|...|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence 4689999998865444555555555554
No 87
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=23.82 E-value=1e+02 Score=25.26 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=26.3
Q ss_pred EEEcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHHhc
Q 014325 152 VIHCMAGKGRTGLMVCSYLVYTGMSAEEALQLYAHKR 188 (426)
Q Consensus 152 vVHC~aG~GRTGtviaayLl~~g~s~~eAl~~~~~~R 188 (426)
+-||.+ -|..|-++..++.+.+++..||++++.+.=
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-HHHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 689984 678899999888888999999999998754
No 88
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=22.08 E-value=1.5e+02 Score=29.55 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.7
Q ss_pred eEEEEcCCCCchhHHHH
Q 014325 150 IAVIHCMAGKGRTGLMV 166 (426)
Q Consensus 150 ~VvVHC~aG~GRTGtvi 166 (426)
.|.|=|.+|+-||-.++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 68999999999996654
No 89
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=21.04 E-value=5.8e+02 Score=28.19 Aligned_cols=86 Identities=10% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhcCCeEEEeeeccCCCCCCc----ccccc---eEEeecCC-----CCCCCHHHHHHHHHHHHHhhccCCC
Q 014325 81 LWQVKAVLDMRHQEHYKVYNLCIEETYDPE----HFYSR---VERYPFDD-----NHVPPLEMIKLLCESVHSWLSSDPK 148 (426)
Q Consensus 81 i~~v~~~L~~kh~~~y~V~NL~se~~y~~~----~~~~~---v~~~p~pD-----~~~P~l~~l~~~~~~i~~~L~~~~~ 148 (426)
.+++.+.++ ...+.|++.++...|.-. .-.|+ -..+||.+ +..++.+.+.++... + --+++
T Consensus 151 ~e~v~~~l~---~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~---~-Gi~~~ 223 (610)
T PRK09629 151 REYLQSRLG---AADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRD---L-GITPD 223 (610)
T ss_pred HHHHHHhhC---CCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHH---c-CCCCC
Confidence 345554442 235678888765555311 01222 24567642 334555555444322 1 12345
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHcCC
Q 014325 149 NIAVIHCMAGKGRTGLMVCSYLVYTGM 175 (426)
Q Consensus 149 ~~VvVHC~aG~GRTGtviaayLl~~g~ 175 (426)
..|+++|..|. |++.+ +..|...|.
T Consensus 224 ~~VVvYC~sG~-rAa~~-~~~L~~lG~ 248 (610)
T PRK09629 224 KEVITHCQTHH-RSGFT-YLVAKALGY 248 (610)
T ss_pred CCEEEECCCCh-HHHHH-HHHHHHcCC
Confidence 68999998885 55443 333334454
No 90
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=20.84 E-value=1.4e+02 Score=24.34 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCeEEEeeeccCCCCCCcccccceEEeecCCCCCCCHHHHHHHHHHHHHhhccCCCCeEEEEcCCCCch
Q 014325 82 WQVKAVLDMRHQEHYKVYNLCIEETYDPEHFYSRVERYPFDDNHVPPLEMIKLLCESVHSWLSSDPKNIAVIHCMAGKGR 161 (426)
Q Consensus 82 ~~v~~~L~~kh~~~y~V~NL~se~~y~~~~~~~~v~~~p~pD~~~P~l~~l~~~~~~i~~~L~~~~~~~VvVHC~aG~GR 161 (426)
+++.+.|+.. .....|+++++...|....+.+- .++| ...+. .....-+ .++.+|+|.|..|...
T Consensus 13 ~el~~~l~~~-~~~~~iiDvR~~~e~~~ghIpgA-~~ip--------~~~l~---~~~~~~i--~~~~~vvvyc~~g~~~ 77 (110)
T cd01521 13 WDVAIALKNG-KPDFVLVDVRSAEAYARGHVPGA-INLP--------HREIC---ENATAKL--DKEKLFVVYCDGPGCN 77 (110)
T ss_pred HHHHHHHHcC-CCCEEEEECCCHHHHhcCCCCCC-EeCC--------HHHhh---hHhhhcC--CCCCeEEEEECCCCCc
Confidence 5666666531 14578999965444543322221 1222 22221 0111111 3457899999888643
Q ss_pred hHHHHHHHHHHcCC
Q 014325 162 TGLMVCSYLVYTGM 175 (426)
Q Consensus 162 TGtviaayLl~~g~ 175 (426)
.+..++..|...|.
T Consensus 78 ~s~~~a~~l~~~G~ 91 (110)
T cd01521 78 GATKAALKLAELGF 91 (110)
T ss_pred hHHHHHHHHHHcCC
Confidence 34444444444554
Done!