BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014327
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283
KR K + NR +A+RS++++ ++ LE+K + L + L +++TLL+ + L
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55
>pdb|1OIO|A Chain A, Gafd (F17c-Type) Fimbrial Adhesin From Escherichia Coli
pdb|1OIO|B Chain B, Gafd (F17c-Type) Fimbrial Adhesin From Escherichia Coli
Length = 178
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 76 NPPKNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEEDLLSMYLDMDKFN 133
N N+G++ A+ ++ + D DL VVG DG S+ TEE L +++ ++
Sbjct: 33 NTGYNIGYQNANVWRISGGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTNYS 92
Query: 134 ASTATSG 140
TA SG
Sbjct: 93 RGTAMSG 99
>pdb|2BSB|A Chain A, E. Coli F17e-G Lectin Domain Complex With N-
Acetylglucosamine
Length = 176
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 71 SRMH--DNPP------KNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEE 120
SR H DN P N+G++ A+ ++ + D DL VVG DG S+ TEE
Sbjct: 20 SRTHAMDNLPFVYDTGYNIGYQNANVWHISGGFCVGLDGKVDLPVVGSLDGQSIYGLTEE 79
Query: 121 DLLSMYLDMDKFNASTATSG 140
L +++ ++ TA SG
Sbjct: 80 VGLLIWMGDTNYSRGTAMSG 99
>pdb|1O9V|A Chain A, F17-Ag Lectin Domain From Escherichia Coli In Complex With
A Selenium Carbohydrate Derivative
pdb|1O9W|A Chain A, F17-Ag Lectin Domain From Escherichia Coli In Complex With
N-Acetyl-Glucosamine
pdb|1ZPL|A Chain A, E. Coli F17a-G Lectin Domain Complex With
Glcnac(Beta1-O)me
pdb|1ZPL|B Chain B, E. Coli F17a-G Lectin Domain Complex With
Glcnac(Beta1-O)me
pdb|2BSC|A Chain A, E. Coli F17a-G Lectin Domain Complex With N-
Acetylglucosamine, High-Resolution Structure
pdb|3F64|A Chain A, F17a-G Lectin Domain With Bound Glcnac(Beta1-O)
Paranitrophenyl Ligand
pdb|3F6J|A Chain A, F17a-G Lectin Domain With Bound Glcnac(Beta1-3)gal
Length = 177
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 71 SRMH--DNPP------KNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEE 120
SR H DN P +G++ A+ ++ + D DL VVG DG S+ TEE
Sbjct: 20 SRTHAMDNLPFVYDTRNKIGYQNANVWHISKGFCVGLDGKVDLPVVGSLDGQSIYGLTEE 79
Query: 121 DLLSMYLDMDKFNASTATSG 140
L +++ K++ TA SG
Sbjct: 80 VGLLIWMGDTKYSRGTAMSG 99
>pdb|1ZK5|A Chain A, Escherichia Coli F17fg Lectin Domain Complex With
N-acetylglucosamine
Length = 176
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 76 NPPKNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEEDLLSMYLDMDKFN 133
N N+G++ A+ ++ + D DL VVG DG S+ TEE L +++ ++
Sbjct: 33 NTGHNIGYQNANVWRISGGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTNYS 92
Query: 134 ASTATSG 140
TA SG
Sbjct: 93 RGTAMSG 99
>pdb|1O9Z|A Chain A, F17-Ag Lectin Domain From Escherichia Coli (Ligand Free)
Length = 177
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 71 SRMH--DNPP------KNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEE 120
SR H DN P +G++ A+ ++ + D DL VVG DG S+ TEE
Sbjct: 20 SRTHAMDNLPFVYDTRNKIGYQNANVWHISKGFCVGLDGKVDLPVVGSLDGQSIYGLTEE 79
Query: 121 DLLSMYLDMDKFNASTATSG 140
L +++ K++ TA SG
Sbjct: 80 VGLLIWMGDTKYSRGTAMSG 99
>pdb|2BS8|A Chain A, Crystal Structure Of F17b-G In Complex With N-Acetyl-D-
Glucosamine
pdb|3FFO|A Chain A, F17b-G Lectin Domain With Bound Glcnac(Beta1-2)man
Length = 176
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 76 NPPKNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEEDLLSMYLDMDKFN 133
N N+G++ A+ + + D DL VVG DG S+ TEE L +++ ++
Sbjct: 33 NTGYNIGYQNANVWRIGGGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTNYS 92
Query: 134 ASTATSG 140
TA SG
Sbjct: 93 RGTAMSG 99
>pdb|2BS7|1 Chain 1, Crystal Structure Of F17b-G In Complex With Chitobiose
Length = 176
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 76 NPPKNVGHRRAHSEILTLPDDISFDS--DLGVVGGADGPSLSDETEEDLLSMYLDMDKFN 133
N N+G++ A+ + + D DL VVG DG S+ TEE L +++ ++
Sbjct: 33 NTGYNIGYQNANVWRIGGGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTNYS 92
Query: 134 ASTATSG 140
TA SG
Sbjct: 93 RGTAMSG 99
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 268 SLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319
SL AQL + + L+ NS++ +L+ +E++ L D +K+E +HLK
Sbjct: 25 SLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLK 76
>pdb|2W6A|A Chain A, X-Ray Structure Of The Dimeric Git1 Coiled-Coil Domain
pdb|2W6A|B Chain B, X-Ray Structure Of The Dimeric Git1 Coiled-Coil Domain
Length = 63
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291
+ +A E KVQ L +SLS +L LQR+ + L AEN +L+
Sbjct: 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,531,185
Number of Sequences: 62578
Number of extensions: 243569
Number of successful extensions: 550
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 21
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)