Query 014327
Match_columns 426
No_of_seqs 334 out of 970
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.3 1.4E-11 3E-16 96.7 9.4 62 226-287 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.2 8.5E-11 1.8E-15 92.1 9.6 62 227-288 3-64 (64)
3 KOG4005 Transcription factor X 98.9 4.8E-09 1E-13 101.4 10.9 84 218-302 59-142 (292)
4 PF07716 bZIP_2: Basic region 98.9 5.1E-09 1.1E-13 79.7 8.1 52 226-278 2-53 (54)
5 KOG4343 bZIP transcription fac 98.9 1.8E-09 3.8E-14 113.7 7.2 64 228-291 280-343 (655)
6 KOG3584 cAMP response element 98.8 4.6E-09 9.9E-14 103.9 6.8 53 228-280 290-342 (348)
7 KOG0709 CREB/ATF family transc 98.7 1.4E-08 3.1E-13 105.8 6.7 66 227-292 249-314 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 5.4E-08 1.2E-12 81.7 -6.3 76 209-286 12-87 (92)
9 KOG3863 bZIP transcription fac 98.1 0.00014 3.1E-09 78.9 16.8 89 207-302 468-556 (604)
10 KOG0837 Transcriptional activa 98.0 2.3E-05 5.1E-10 77.1 8.2 52 228-279 204-256 (279)
11 KOG4571 Activating transcripti 96.9 0.0047 1E-07 62.0 9.4 53 226-278 223-276 (294)
12 KOG4196 bZIP transcription fac 96.7 0.015 3.4E-07 52.2 9.7 64 227-297 51-114 (135)
13 KOG3119 Basic region leucine z 96.4 0.021 4.5E-07 56.9 10.1 54 226-279 191-244 (269)
14 PF11559 ADIP: Afadin- and alp 95.5 0.63 1.4E-05 42.0 14.6 80 243-322 45-124 (151)
15 PF06005 DUF904: Protein of un 95.1 0.46 9.9E-06 38.8 10.9 52 250-301 4-55 (72)
16 KOG4005 Transcription factor X 94.3 0.85 1.8E-05 45.2 12.6 96 213-308 57-155 (292)
17 PF06156 DUF972: Protein of un 94.2 0.22 4.7E-06 43.5 7.5 49 251-299 9-57 (107)
18 PF14197 Cep57_CLD_2: Centroso 94.0 0.91 2E-05 36.7 10.2 59 255-320 3-61 (69)
19 PF14197 Cep57_CLD_2: Centroso 93.9 0.57 1.2E-05 37.9 8.9 51 250-300 12-62 (69)
20 PRK10884 SH3 domain-containing 93.8 0.7 1.5E-05 44.6 11.0 44 272-315 126-169 (206)
21 PRK13169 DNA replication intia 93.7 0.29 6.3E-06 43.0 7.4 48 251-298 9-56 (110)
22 PF08614 ATG16: Autophagy prot 93.5 1.5 3.2E-05 41.4 12.4 70 228-297 115-184 (194)
23 PF10473 CENP-F_leu_zip: Leuci 93.4 4.6 9.9E-05 37.0 14.8 73 229-301 31-103 (140)
24 PRK11637 AmiB activator; Provi 93.2 8.1 0.00018 40.6 18.6 41 254-294 72-112 (428)
25 PF10146 zf-C4H2: Zinc finger- 93.2 3.5 7.5E-05 40.6 14.8 84 243-326 25-109 (230)
26 PF04102 SlyX: SlyX; InterPro 92.5 0.6 1.3E-05 37.4 7.1 49 250-298 4-52 (69)
27 PRK00295 hypothetical protein; 92.3 0.91 2E-05 36.5 7.9 47 251-297 6-52 (68)
28 KOG0982 Centrosomal protein Nu 92.3 2.7 5.8E-05 44.9 13.3 85 241-326 289-394 (502)
29 PRK00736 hypothetical protein; 92.3 0.84 1.8E-05 36.7 7.6 47 250-296 5-51 (68)
30 COG1579 Zn-ribbon protein, pos 92.2 6.8 0.00015 38.9 15.3 74 225-298 54-137 (239)
31 PRK04325 hypothetical protein; 92.1 0.86 1.9E-05 37.2 7.5 46 251-296 10-55 (74)
32 PRK02793 phi X174 lysis protei 91.8 0.96 2.1E-05 36.7 7.5 48 250-297 8-55 (72)
33 COG3074 Uncharacterized protei 91.7 2.5 5.5E-05 34.7 9.6 38 255-292 23-60 (79)
34 PRK02119 hypothetical protein; 91.5 1.1 2.3E-05 36.6 7.5 47 250-296 9-55 (73)
35 TIGR02449 conserved hypothetic 91.4 1.8 3.9E-05 34.9 8.5 49 252-300 9-57 (65)
36 PF14662 CCDC155: Coiled-coil 91.3 4.7 0.0001 38.8 12.7 48 252-299 97-144 (193)
37 PF08614 ATG16: Autophagy prot 91.1 0.82 1.8E-05 43.2 7.5 66 250-315 116-181 (194)
38 PRK04406 hypothetical protein; 91.1 1.2 2.6E-05 36.6 7.5 46 250-295 11-56 (75)
39 PF07989 Microtub_assoc: Micro 90.7 3.5 7.7E-05 33.8 9.8 61 252-312 2-70 (75)
40 PF13747 DUF4164: Domain of un 90.6 5.7 0.00012 33.5 11.3 71 228-298 10-80 (89)
41 PRK15422 septal ring assembly 90.4 4.9 0.00011 33.6 10.4 39 251-289 5-43 (79)
42 TIGR02449 conserved hypothetic 90.4 3.5 7.6E-05 33.2 9.3 50 252-301 2-51 (65)
43 PRK11637 AmiB activator; Provi 90.3 7.8 0.00017 40.7 14.6 83 227-309 168-250 (428)
44 PF10473 CENP-F_leu_zip: Leuci 90.3 14 0.00031 33.9 14.3 51 258-308 53-103 (140)
45 PF10224 DUF2205: Predicted co 90.2 1.5 3.2E-05 36.6 7.3 48 253-300 19-66 (80)
46 PF05266 DUF724: Protein of un 90.2 11 0.00024 36.0 14.2 61 226-286 86-146 (190)
47 PRK00846 hypothetical protein; 90.1 1.8 3.9E-05 35.9 7.7 49 250-298 13-61 (77)
48 PF09726 Macoilin: Transmembra 90.0 6.7 0.00015 44.4 14.5 15 311-325 641-655 (697)
49 COG3074 Uncharacterized protei 89.8 7.7 0.00017 31.9 10.8 69 250-325 4-76 (79)
50 KOG0243 Kinesin-like protein [ 89.4 6.2 0.00013 46.3 13.8 45 250-294 448-492 (1041)
51 PF10186 Atg14: UV radiation r 89.3 15 0.00033 35.7 14.9 44 248-291 61-104 (302)
52 PRK09039 hypothetical protein; 89.3 11 0.00023 39.1 14.3 41 258-298 124-164 (343)
53 PF04111 APG6: Autophagy prote 89.1 12 0.00026 38.2 14.5 82 241-322 55-136 (314)
54 PRK15422 septal ring assembly 89.0 5 0.00011 33.5 9.4 44 251-294 19-62 (79)
55 PF06156 DUF972: Protein of un 88.9 2.4 5.1E-05 37.1 8.0 49 254-302 5-53 (107)
56 PF09726 Macoilin: Transmembra 88.8 11 0.00023 42.9 14.9 81 241-321 479-581 (697)
57 PF14662 CCDC155: Coiled-coil 88.3 4 8.6E-05 39.3 9.7 47 252-298 10-56 (193)
58 PRK13729 conjugal transfer pil 88.1 2.4 5.1E-05 45.8 8.9 43 252-294 78-120 (475)
59 TIGR02894 DNA_bind_RsfA transc 87.9 5.3 0.00011 37.5 10.0 57 258-321 98-154 (161)
60 COG4467 Regulator of replicati 87.9 1.9 4.1E-05 38.0 6.6 46 251-296 9-54 (114)
61 COG2433 Uncharacterized conser 87.7 4.7 0.0001 44.8 10.9 72 251-322 423-511 (652)
62 COG4942 Membrane-bound metallo 87.2 12 0.00026 40.0 13.4 73 229-301 38-110 (420)
63 COG1579 Zn-ribbon protein, pos 87.1 26 0.00056 34.9 14.8 48 228-275 30-77 (239)
64 PRK10884 SH3 domain-containing 87.1 12 0.00026 36.3 12.3 56 252-307 120-175 (206)
65 PF10226 DUF2216: Uncharacteri 86.8 31 0.00068 33.3 14.6 40 228-270 22-61 (195)
66 PRK13169 DNA replication intia 86.5 4 8.7E-05 36.0 7.9 50 253-302 4-53 (110)
67 PF02403 Seryl_tRNA_N: Seryl-t 86.4 19 0.00041 30.5 12.1 49 254-302 40-91 (108)
68 PF06005 DUF904: Protein of un 86.3 12 0.00025 30.6 10.0 42 252-293 20-61 (72)
69 PF11559 ADIP: Afadin- and alp 86.3 25 0.00053 31.7 14.6 62 229-290 45-106 (151)
70 TIGR03752 conj_TIGR03752 integ 86.1 3.9 8.5E-05 44.1 9.2 51 252-302 75-126 (472)
71 PF10481 CENP-F_N: Cenp-F N-te 85.9 13 0.00028 37.8 12.1 66 254-319 57-122 (307)
72 PF11932 DUF3450: Protein of u 85.9 30 0.00066 33.8 14.7 40 248-287 54-93 (251)
73 KOG0250 DNA repair protein RAD 85.6 26 0.00056 41.5 15.8 61 241-301 370-431 (1074)
74 PF12718 Tropomyosin_1: Tropom 85.5 12 0.00025 34.2 10.8 57 246-302 31-90 (143)
75 PF12325 TMF_TATA_bd: TATA ele 85.5 21 0.00045 31.9 12.1 14 308-321 98-111 (120)
76 PRK09039 hypothetical protein; 84.8 30 0.00066 35.8 14.7 44 255-298 135-178 (343)
77 KOG3227 Calcium-responsive tra 84.6 2.5 5.5E-05 41.2 6.3 48 279-326 24-73 (231)
78 PF07888 CALCOCO1: Calcium bin 84.6 24 0.00051 39.1 14.3 59 234-292 155-213 (546)
79 KOG4807 F-actin binding protei 84.1 18 0.00039 38.6 12.6 95 233-327 374-496 (593)
80 KOG0239 Kinesin (KAR3 subfamil 84.0 14 0.00031 41.7 12.7 70 252-321 243-315 (670)
81 PRK04863 mukB cell division pr 83.8 31 0.00067 42.5 16.2 96 229-324 321-429 (1486)
82 COG2433 Uncharacterized conser 83.7 13 0.00028 41.5 11.8 43 234-276 419-462 (652)
83 PF02183 HALZ: Homeobox associ 83.6 3.2 6.9E-05 31.0 5.1 38 263-300 4-41 (45)
84 PF05700 BCAS2: Breast carcino 83.3 17 0.00036 35.2 11.4 77 249-325 135-215 (221)
85 PF04880 NUDE_C: NUDE protein, 83.1 1.8 3.9E-05 40.7 4.6 53 252-308 2-54 (166)
86 PF09730 BicD: Microtubule-ass 82.7 26 0.00056 40.0 14.0 85 211-299 27-118 (717)
87 KOG1414 Transcriptional activa 82.6 0.059 1.3E-06 56.4 -6.1 53 226-278 151-207 (395)
88 PF12711 Kinesin-relat_1: Kine 82.6 20 0.00044 30.4 10.1 57 262-320 22-84 (86)
89 PF08581 Tup_N: Tup N-terminal 82.5 27 0.00059 29.1 11.9 71 250-323 4-74 (79)
90 PF00038 Filament: Intermediat 82.5 55 0.0012 32.5 15.5 11 310-320 294-304 (312)
91 COG4026 Uncharacterized protei 82.2 48 0.001 33.1 13.9 22 254-275 139-160 (290)
92 KOG1414 Transcriptional activa 82.0 0.23 5E-06 52.0 -2.0 44 227-270 283-326 (395)
93 PF15030 DUF4527: Protein of u 82.0 35 0.00075 34.3 13.0 85 233-317 19-104 (277)
94 PF10805 DUF2730: Protein of u 82.0 13 0.00028 32.2 9.1 49 254-302 46-96 (106)
95 PF12325 TMF_TATA_bd: TATA ele 81.9 27 0.00058 31.2 11.2 38 253-290 26-63 (120)
96 KOG0933 Structural maintenance 81.8 24 0.00052 41.6 13.4 78 241-321 781-858 (1174)
97 KOG0995 Centromere-associated 81.8 43 0.00093 37.2 14.8 46 249-294 279-324 (581)
98 PF05911 DUF869: Plant protein 81.6 18 0.0004 41.4 12.5 73 249-322 133-206 (769)
99 PF11932 DUF3450: Protein of u 81.6 53 0.0012 32.1 14.4 46 253-298 52-97 (251)
100 TIGR03495 phage_LysB phage lys 81.4 18 0.00039 33.0 10.1 72 253-324 29-100 (135)
101 PF13851 GAS: Growth-arrest sp 81.4 52 0.0011 31.6 15.5 54 249-302 85-138 (201)
102 KOG0977 Nuclear envelope prote 81.0 37 0.0008 37.6 14.1 63 239-301 130-192 (546)
103 COG4467 Regulator of replicati 80.4 9.3 0.0002 33.8 7.6 51 253-303 4-54 (114)
104 PF13851 GAS: Growth-arrest sp 80.2 45 0.00098 32.0 13.1 57 229-285 72-128 (201)
105 PF08172 CASP_C: CASP C termin 80.0 6.7 0.00014 39.0 7.5 36 245-280 88-123 (248)
106 KOG0980 Actin-binding protein 79.4 47 0.001 38.8 14.5 71 224-294 384-454 (980)
107 PF04111 APG6: Autophagy prote 79.3 22 0.00047 36.4 11.2 47 252-298 45-91 (314)
108 PRK05431 seryl-tRNA synthetase 79.0 43 0.00094 35.6 13.7 95 227-326 10-107 (425)
109 TIGR03752 conj_TIGR03752 integ 78.9 14 0.0003 40.1 9.9 27 253-279 69-95 (472)
110 PF11180 DUF2968: Protein of u 78.9 56 0.0012 31.6 13.0 71 254-324 116-186 (192)
111 KOG1029 Endocytic adaptor prot 78.8 24 0.00051 40.7 11.9 13 37-49 116-128 (1118)
112 COG2900 SlyX Uncharacterized p 78.6 13 0.00029 30.5 7.5 49 250-298 8-56 (72)
113 PF10186 Atg14: UV radiation r 78.3 69 0.0015 31.1 14.3 32 245-276 65-96 (302)
114 KOG0977 Nuclear envelope prote 78.2 34 0.00074 37.9 12.7 40 252-291 150-189 (546)
115 PF05266 DUF724: Protein of un 78.1 42 0.00091 32.1 12.0 28 250-277 131-158 (190)
116 PF04728 LPP: Lipoprotein leuc 78.1 21 0.00045 28.1 8.1 43 252-294 5-47 (56)
117 PF09304 Cortex-I_coil: Cortex 78.1 29 0.00063 30.6 9.9 43 253-295 33-75 (107)
118 COG4026 Uncharacterized protei 77.5 31 0.00067 34.4 11.0 48 253-300 159-206 (290)
119 KOG1103 Predicted coiled-coil 77.4 7.6 0.00016 40.8 7.2 65 238-302 226-290 (561)
120 KOG1962 B-cell receptor-associ 77.3 31 0.00067 33.9 11.0 61 262-322 149-209 (216)
121 PF02403 Seryl_tRNA_N: Seryl-t 77.1 44 0.00095 28.3 11.5 84 237-320 10-102 (108)
122 PF02183 HALZ: Homeobox associ 77.1 10 0.00022 28.3 5.9 42 254-295 2-43 (45)
123 PF10211 Ax_dynein_light: Axon 76.9 52 0.0011 31.2 12.3 37 253-289 123-159 (189)
124 PF14817 HAUS5: HAUS augmin-li 76.8 30 0.00065 38.9 12.1 55 252-306 81-135 (632)
125 KOG4643 Uncharacterized coiled 76.8 38 0.00083 40.0 13.0 75 252-326 266-342 (1195)
126 PRK02119 hypothetical protein; 76.7 21 0.00045 29.1 8.2 43 252-294 4-46 (73)
127 PLN02678 seryl-tRNA synthetase 76.3 45 0.00097 36.0 12.9 96 227-326 14-112 (448)
128 PF03962 Mnd1: Mnd1 family; I 75.9 55 0.0012 31.1 12.1 21 306-326 135-155 (188)
129 PF05377 FlaC_arch: Flagella a 75.8 16 0.00034 28.6 6.9 48 252-313 2-49 (55)
130 PF15070 GOLGA2L5: Putative go 75.7 1.4E+02 0.0031 33.5 19.3 66 230-295 102-191 (617)
131 KOG3648 Golgi apparatus protei 75.7 2.9 6.2E-05 46.8 3.8 11 331-341 42-52 (1179)
132 PF08537 NBP1: Fungal Nap bind 75.5 50 0.0011 34.3 12.4 63 201-263 92-156 (323)
133 PF12718 Tropomyosin_1: Tropom 75.3 23 0.0005 32.2 9.1 53 250-302 14-66 (143)
134 PRK04406 hypothetical protein; 75.2 24 0.00053 28.9 8.3 44 252-295 6-49 (75)
135 PF15058 Speriolin_N: Sperioli 75.1 4.3 9.4E-05 39.1 4.4 45 274-318 8-52 (200)
136 KOG0995 Centromere-associated 75.0 65 0.0014 35.9 13.7 54 244-297 253-306 (581)
137 KOG3119 Basic region leucine z 74.9 20 0.00044 35.9 9.4 52 249-300 193-244 (269)
138 KOG0288 WD40 repeat protein Ti 74.8 98 0.0021 33.4 14.5 48 229-276 27-74 (459)
139 PF04849 HAP1_N: HAP1 N-termin 74.4 28 0.00061 35.8 10.3 30 252-281 162-191 (306)
140 PF10481 CENP-F_N: Cenp-F N-te 74.4 40 0.00086 34.4 11.1 77 243-319 32-115 (307)
141 PTZ00186 heat shock 70 kDa pre 74.3 42 0.0009 37.8 12.5 9 251-259 562-570 (657)
142 PF11180 DUF2968: Protein of u 74.3 88 0.0019 30.3 13.7 87 218-305 95-181 (192)
143 PF04849 HAP1_N: HAP1 N-termin 74.2 25 0.00055 36.2 9.9 46 253-298 220-268 (306)
144 KOG2077 JNK/SAPK-associated pr 74.1 17 0.00036 40.5 9.0 76 212-303 300-375 (832)
145 KOG0971 Microtubule-associated 73.7 62 0.0013 38.1 13.5 25 232-256 283-307 (1243)
146 KOG4369 RTK signaling protein 73.6 4.8 0.0001 47.8 5.0 23 9-31 1426-1448(2131)
147 smart00338 BRLZ basic region l 73.5 33 0.00072 26.6 8.4 26 274-299 29-54 (65)
148 PF05837 CENP-H: Centromere pr 73.4 24 0.00051 30.5 8.2 44 259-302 5-48 (106)
149 PF06785 UPF0242: Uncharacteri 73.3 33 0.00072 35.9 10.5 50 246-295 123-172 (401)
150 PRK13922 rod shape-determining 73.3 44 0.00095 32.9 11.3 40 280-323 71-110 (276)
151 PF07106 TBPIP: Tat binding pr 73.0 26 0.00057 32.1 9.0 49 251-299 87-137 (169)
152 PF09304 Cortex-I_coil: Cortex 73.0 67 0.0015 28.4 11.1 51 236-286 23-73 (107)
153 PF10805 DUF2730: Protein of u 73.0 45 0.00098 28.8 9.9 52 251-302 36-89 (106)
154 KOG0161 Myosin class II heavy 72.7 37 0.0008 42.8 12.4 86 233-318 1643-1728(1930)
155 PF06428 Sec2p: GDP/GTP exchan 72.7 5.2 0.00011 34.7 4.0 74 253-326 11-85 (100)
156 smart00787 Spc7 Spc7 kinetocho 72.3 1.2E+02 0.0027 31.1 14.4 43 254-296 148-190 (312)
157 COG3883 Uncharacterized protei 71.9 40 0.00086 34.1 10.5 50 251-300 39-88 (265)
158 PF10212 TTKRSYEDQ: Predicted 71.9 1.2E+02 0.0025 33.6 14.7 38 284-321 479-516 (518)
159 KOG1883 Cofactor required for 71.7 6.1 0.00013 46.7 5.3 12 119-130 1210-1221(1517)
160 TIGR00219 mreC rod shape-deter 71.7 28 0.0006 35.1 9.5 13 311-323 96-108 (283)
161 PF15070 GOLGA2L5: Putative go 71.7 1.3E+02 0.0028 33.9 15.4 66 249-314 166-231 (617)
162 PRK05431 seryl-tRNA synthetase 71.5 57 0.0012 34.7 12.2 67 255-324 40-109 (425)
163 PF10211 Ax_dynein_light: Axon 71.5 64 0.0014 30.7 11.4 27 272-298 128-154 (189)
164 PF12777 MT: Microtubule-bindi 71.1 23 0.0005 36.4 9.0 61 254-314 232-292 (344)
165 PF07106 TBPIP: Tat binding pr 71.0 28 0.0006 32.0 8.7 51 252-302 81-133 (169)
166 PF06785 UPF0242: Uncharacteri 70.7 91 0.002 32.8 12.9 79 229-311 75-167 (401)
167 KOG3650 Predicted coiled-coil 70.7 19 0.00042 31.5 6.9 44 256-299 62-105 (120)
168 KOG1029 Endocytic adaptor prot 70.5 52 0.0011 38.1 11.9 12 119-130 249-261 (1118)
169 PF15290 Syntaphilin: Golgi-lo 70.3 35 0.00075 34.9 9.6 29 252-280 77-105 (305)
170 PF15035 Rootletin: Ciliary ro 70.1 52 0.0011 31.3 10.4 55 251-305 68-122 (182)
171 PLN02320 seryl-tRNA synthetase 70.1 1E+02 0.0023 33.8 14.0 70 227-301 75-153 (502)
172 PF09728 Taxilin: Myosin-like 69.9 36 0.00078 34.8 10.0 26 270-295 243-268 (309)
173 PF12709 Kinetocho_Slk19: Cent 69.9 21 0.00045 30.4 6.8 32 248-279 40-71 (87)
174 PF05278 PEARLI-4: Arabidopsis 69.4 87 0.0019 31.8 12.3 7 87-93 54-60 (269)
175 TIGR00219 mreC rod shape-deter 69.4 19 0.00041 36.2 7.8 37 258-294 67-107 (283)
176 KOG2264 Exostosin EXT1L [Signa 68.8 45 0.00098 37.3 10.8 51 250-300 93-143 (907)
177 PF04156 IncA: IncA protein; 68.7 74 0.0016 29.4 11.1 8 267-274 105-112 (191)
178 KOG0946 ER-Golgi vesicle-tethe 68.6 34 0.00075 39.5 10.1 72 249-327 649-720 (970)
179 PRK10803 tol-pal system protei 68.2 31 0.00068 34.3 8.9 45 252-296 56-100 (263)
180 PF09755 DUF2046: Uncharacteri 68.0 53 0.0012 33.9 10.6 25 252-276 43-67 (310)
181 PF06216 RTBV_P46: Rice tungro 67.9 27 0.00058 35.4 8.3 49 250-298 64-112 (389)
182 KOG1962 B-cell receptor-associ 67.8 33 0.00071 33.7 8.7 37 258-294 173-209 (216)
183 KOG0999 Microtubule-associated 67.7 79 0.0017 35.4 12.3 43 259-301 172-217 (772)
184 PF09730 BicD: Microtubule-ass 67.7 73 0.0016 36.5 12.6 49 249-297 96-147 (717)
185 KOG4643 Uncharacterized coiled 67.3 1.1E+02 0.0024 36.5 13.8 26 251-276 531-556 (1195)
186 PRK02793 phi X174 lysis protei 67.2 45 0.00097 27.1 8.1 28 253-280 4-31 (72)
187 PRK13922 rod shape-determining 66.9 37 0.0008 33.5 9.1 41 249-293 68-108 (276)
188 PF09606 Med15: ARC105 or Med1 66.7 1.9 4E-05 49.4 0.0 11 121-131 45-55 (799)
189 PF04102 SlyX: SlyX; InterPro 66.6 37 0.00079 27.2 7.4 44 255-298 2-45 (69)
190 KOG1899 LAR transmembrane tyro 66.5 72 0.0016 36.1 11.8 67 233-301 128-197 (861)
191 KOG2010 Double stranded RNA bi 66.5 23 0.00049 37.0 7.6 55 253-307 143-198 (405)
192 COG3883 Uncharacterized protei 66.3 89 0.0019 31.7 11.7 51 254-304 49-99 (265)
193 TIGR00414 serS seryl-tRNA synt 66.2 1.8E+02 0.0038 31.0 14.5 48 254-301 41-92 (418)
194 PF15619 Lebercilin: Ciliary p 66.1 1.3E+02 0.0028 28.9 13.7 84 240-323 8-113 (194)
195 KOG4571 Activating transcripti 66.1 36 0.00079 34.8 8.9 39 273-311 250-289 (294)
196 PF00038 Filament: Intermediat 65.8 1.5E+02 0.0032 29.5 15.1 42 259-300 211-252 (312)
197 KOG1265 Phospholipase C [Lipid 65.7 1.7E+02 0.0036 34.7 14.7 70 231-300 1030-1104(1189)
198 PF13094 CENP-Q: CENP-Q, a CEN 65.3 62 0.0013 29.5 9.7 56 259-314 29-84 (160)
199 KOG1853 LIS1-interacting prote 64.9 1.3E+02 0.0029 30.6 12.3 51 235-285 76-126 (333)
200 PF15294 Leu_zip: Leucine zipp 64.8 25 0.00055 35.7 7.5 44 255-298 130-173 (278)
201 PRK10698 phage shock protein P 64.7 83 0.0018 30.6 10.9 57 251-307 100-156 (222)
202 PF05667 DUF812: Protein of un 64.5 1.5E+02 0.0032 33.3 14.0 38 282-319 444-481 (594)
203 PHA02562 46 endonuclease subun 64.5 1.4E+02 0.0031 31.9 13.7 62 241-302 328-389 (562)
204 PF10146 zf-C4H2: Zinc finger- 64.3 1.1E+02 0.0025 30.1 11.8 45 256-300 59-103 (230)
205 KOG0249 LAR-interacting protei 64.1 1.2E+02 0.0026 35.0 13.0 43 278-320 216-258 (916)
206 PRK10803 tol-pal system protei 64.1 52 0.0011 32.7 9.6 50 253-302 43-92 (263)
207 PF01166 TSC22: TSC-22/dip/bun 64.1 13 0.00027 29.5 4.1 27 266-292 16-42 (59)
208 TIGR00414 serS seryl-tRNA synt 64.0 86 0.0019 33.3 11.7 97 227-326 10-110 (418)
209 PF04859 DUF641: Plant protein 63.7 22 0.00048 32.3 6.3 40 253-292 90-129 (131)
210 PF05667 DUF812: Protein of un 63.6 56 0.0012 36.6 10.6 54 251-304 329-382 (594)
211 PF09744 Jnk-SapK_ap_N: JNK_SA 63.4 1.3E+02 0.0028 28.1 12.0 23 262-284 87-109 (158)
212 PF09789 DUF2353: Uncharacteri 63.3 1.9E+02 0.0042 30.0 14.9 30 279-308 190-219 (319)
213 KOG4360 Uncharacterized coiled 63.2 52 0.0011 36.3 9.9 48 253-300 222-269 (596)
214 PF09738 DUF2051: Double stran 63.1 1.9E+02 0.0041 29.8 14.0 25 217-247 83-107 (302)
215 KOG0804 Cytoplasmic Zn-finger 62.9 1.3E+02 0.0027 32.9 12.5 7 111-117 137-143 (493)
216 KOG0250 DNA repair protein RAD 62.6 1.7E+02 0.0037 35.0 14.5 48 251-298 366-414 (1074)
217 KOG1924 RhoA GTPase effector D 62.5 15 0.00033 42.2 6.0 29 235-263 777-805 (1102)
218 PRK00295 hypothetical protein; 62.3 58 0.0013 26.1 7.8 40 255-294 3-42 (68)
219 KOG4369 RTK signaling protein 62.2 4.7 0.0001 47.9 2.1 6 14-19 1394-1399(2131)
220 PF07200 Mod_r: Modifier of ru 62.0 1.2E+02 0.0026 27.1 12.2 44 231-274 29-72 (150)
221 PRK00888 ftsB cell division pr 61.6 35 0.00075 29.6 6.9 19 280-298 43-61 (105)
222 PF12329 TMF_DNA_bd: TATA elem 61.4 88 0.0019 25.5 9.8 45 254-298 9-53 (74)
223 PF00170 bZIP_1: bZIP transcri 61.3 75 0.0016 24.6 9.0 26 273-298 28-53 (64)
224 TIGR01843 type_I_hlyD type I s 61.2 1.1E+02 0.0023 31.3 11.5 19 258-276 204-222 (423)
225 KOG4661 Hsp27-ERE-TATA-binding 61.0 2.1E+02 0.0046 32.3 14.0 78 208-289 594-671 (940)
226 KOG0161 Myosin class II heavy 60.9 72 0.0016 40.4 11.7 83 238-320 1599-1681(1930)
227 PRK04325 hypothetical protein; 60.8 66 0.0014 26.2 8.0 24 253-276 5-28 (74)
228 PF01486 K-box: K-box region; 60.7 23 0.00049 29.9 5.5 31 243-273 64-98 (100)
229 PF00769 ERM: Ezrin/radixin/mo 60.6 1.8E+02 0.0039 28.8 15.5 66 254-319 51-116 (246)
230 cd07596 BAR_SNX The Bin/Amphip 60.5 1.4E+02 0.003 27.4 11.3 42 229-270 96-137 (218)
231 PF05278 PEARLI-4: Arabidopsis 60.3 2E+02 0.0044 29.3 14.4 24 277-300 213-236 (269)
232 PF05103 DivIVA: DivIVA protei 60.2 5.8 0.00012 34.4 1.9 45 250-294 25-69 (131)
233 KOG4657 Uncharacterized conser 59.6 1.9E+02 0.0042 28.9 13.6 49 254-302 59-110 (246)
234 PF05791 Bacillus_HBL: Bacillu 59.4 1.4E+02 0.003 28.2 11.1 78 242-322 102-179 (184)
235 PF04871 Uso1_p115_C: Uso1 / p 58.9 1.4E+02 0.0031 27.0 10.8 10 316-325 105-114 (136)
236 KOG4674 Uncharacterized conser 58.8 77 0.0017 39.8 11.3 78 242-319 1235-1320(1822)
237 TIGR02894 DNA_bind_RsfA transc 58.8 63 0.0014 30.5 8.5 22 254-275 115-136 (161)
238 PRK14127 cell division protein 58.8 66 0.0014 28.4 8.2 49 253-301 40-101 (109)
239 COG1340 Uncharacterized archae 58.7 2.3E+02 0.0049 29.3 14.6 60 231-296 28-87 (294)
240 PRK00846 hypothetical protein; 58.6 76 0.0016 26.4 8.0 26 253-278 9-34 (77)
241 PF07412 Geminin: Geminin; In 58.6 36 0.00077 33.1 7.0 35 264-298 125-159 (200)
242 cd07666 BAR_SNX7 The Bin/Amphi 58.5 1.8E+02 0.0038 29.1 12.1 76 231-316 151-228 (243)
243 TIGR02977 phageshock_pspA phag 58.3 1.3E+02 0.0028 28.9 11.0 55 251-305 100-154 (219)
244 PF01166 TSC22: TSC-22/dip/bun 58.3 17 0.00037 28.8 4.0 24 249-272 20-43 (59)
245 TIGR00606 rad50 rad50. This fa 58.1 2.2E+02 0.0048 34.6 15.1 23 256-278 887-909 (1311)
246 PF08232 Striatin: Striatin fa 58.1 60 0.0013 29.3 8.1 48 255-302 16-63 (134)
247 PF07200 Mod_r: Modifier of ru 58.0 1.4E+02 0.003 26.7 13.1 23 214-237 3-25 (150)
248 KOG0976 Rho/Rac1-interacting s 58.0 86 0.0019 36.6 10.7 41 258-298 107-147 (1265)
249 PRK00736 hypothetical protein; 57.6 78 0.0017 25.4 7.8 22 255-276 3-24 (68)
250 PF12761 End3: Actin cytoskele 57.1 1.8E+02 0.0039 28.3 11.5 18 245-262 131-148 (195)
251 TIGR03007 pepcterm_ChnLen poly 56.8 2.1E+02 0.0045 30.4 13.2 71 252-322 312-385 (498)
252 PF05529 Bap31: B-cell recepto 56.8 1.3E+02 0.0028 28.1 10.4 35 285-319 154-188 (192)
253 PF15035 Rootletin: Ciliary ro 56.8 1.8E+02 0.0039 27.6 12.3 33 268-300 78-110 (182)
254 KOG0971 Microtubule-associated 56.6 2.1E+02 0.0046 34.0 13.5 84 239-322 399-506 (1243)
255 PF09325 Vps5: Vps5 C terminal 56.6 1.8E+02 0.0038 27.4 11.7 21 244-264 129-149 (236)
256 PF05483 SCP-1: Synaptonemal c 56.3 3.2E+02 0.0069 31.5 14.6 78 247-324 605-686 (786)
257 TIGR02209 ftsL_broad cell divi 56.3 62 0.0013 26.0 7.2 36 264-299 24-59 (85)
258 KOG2264 Exostosin EXT1L [Signa 56.2 61 0.0013 36.4 9.0 47 272-318 94-140 (907)
259 PRK13729 conjugal transfer pil 56.1 42 0.00091 36.6 7.8 39 253-291 72-110 (475)
260 TIGR02231 conserved hypothetic 55.8 1.2E+02 0.0027 32.7 11.4 15 232-246 87-101 (525)
261 PF10234 Cluap1: Clusterin-ass 55.5 1.2E+02 0.0025 30.9 10.3 12 83-94 6-17 (267)
262 PF04977 DivIC: Septum formati 55.5 44 0.00095 26.2 6.1 25 273-297 26-50 (80)
263 PF14282 FlxA: FlxA-like prote 55.3 66 0.0014 27.8 7.6 11 254-264 23-33 (106)
264 COG5293 Predicted ATPase [Gene 55.3 2.5E+02 0.0055 30.9 13.2 78 232-309 330-417 (591)
265 KOG3335 Predicted coiled-coil 55.2 19 0.00041 34.4 4.5 45 227-277 89-133 (181)
266 PF15294 Leu_zip: Leucine zipp 55.0 48 0.001 33.8 7.5 53 274-326 128-180 (278)
267 PF07558 Shugoshin_N: Shugoshi 54.9 14 0.00031 27.6 2.9 30 265-294 15-44 (46)
268 PF07407 Seadorna_VP6: Seadorn 54.9 57 0.0012 34.2 8.1 11 252-262 48-58 (420)
269 KOG3564 GTPase-activating prot 54.8 88 0.0019 34.4 9.8 68 240-307 36-107 (604)
270 PF13166 AAA_13: AAA domain 54.6 2.9E+02 0.0062 30.7 14.3 67 252-318 405-471 (712)
271 TIGR03319 YmdA_YtgF conserved 54.6 3.3E+02 0.0071 29.9 14.8 7 249-255 50-56 (514)
272 PF08702 Fib_alpha: Fibrinogen 54.4 1.8E+02 0.0038 26.7 10.9 41 253-293 85-126 (146)
273 KOG4673 Transcription factor T 54.2 1.4E+02 0.003 34.4 11.4 31 248-278 407-437 (961)
274 KOG0980 Actin-binding protein 54.2 4E+02 0.0087 31.5 15.2 47 229-275 445-491 (980)
275 COG4372 Uncharacterized protei 54.0 3.1E+02 0.0067 29.7 13.4 85 238-322 125-212 (499)
276 PF04977 DivIC: Septum formati 53.9 51 0.0011 25.8 6.2 29 248-276 22-50 (80)
277 COG1382 GimC Prefoldin, chaper 53.9 57 0.0012 29.3 7.1 36 244-279 64-99 (119)
278 KOG0709 CREB/ATF family transc 53.9 44 0.00096 36.3 7.4 70 228-301 243-316 (472)
279 TIGR03545 conserved hypothetic 53.8 95 0.0021 34.5 10.2 76 248-323 189-272 (555)
280 PF15254 CCDC14: Coiled-coil d 53.8 2.6E+02 0.0057 32.5 13.6 14 313-326 536-549 (861)
281 PF07889 DUF1664: Protein of u 53.7 1.7E+02 0.0037 26.4 10.5 55 247-301 65-119 (126)
282 PF05483 SCP-1: Synaptonemal c 53.6 1.3E+02 0.0028 34.5 11.1 69 256-324 586-654 (786)
283 PF14915 CCDC144C: CCDC144C pr 53.5 2.8E+02 0.006 28.8 13.7 67 238-304 181-247 (305)
284 PF04728 LPP: Lipoprotein leuc 53.5 1.1E+02 0.0024 24.1 7.8 35 257-291 3-37 (56)
285 PF14915 CCDC144C: CCDC144C pr 53.5 2.5E+02 0.0054 29.1 12.3 69 253-321 217-293 (305)
286 KOG2391 Vacuolar sorting prote 53.5 99 0.0021 32.5 9.6 8 121-128 130-137 (365)
287 KOG4360 Uncharacterized coiled 53.4 1.4E+02 0.0031 33.0 11.2 54 253-306 208-261 (596)
288 PF10174 Cast: RIM-binding pro 53.4 2.9E+02 0.0062 32.2 14.2 53 248-300 299-358 (775)
289 KOG4343 bZIP transcription fac 53.3 69 0.0015 35.6 8.8 64 226-300 275-338 (655)
290 PF10205 KLRAQ: Predicted coil 53.0 1.6E+02 0.0035 25.9 10.3 50 253-302 15-64 (102)
291 PF15066 CAGE1: Cancer-associa 53.0 81 0.0018 34.4 9.2 69 254-322 342-427 (527)
292 PF15058 Speriolin_N: Sperioli 52.6 34 0.00073 33.2 5.7 35 252-294 7-41 (200)
293 PF03980 Nnf1: Nnf1 ; InterPr 52.6 25 0.00054 30.0 4.5 31 247-277 77-107 (109)
294 PF05700 BCAS2: Breast carcino 52.6 1.4E+02 0.003 29.0 10.1 34 269-302 173-206 (221)
295 KOG2991 Splicing regulator [RN 52.3 1.2E+02 0.0027 30.9 9.8 19 306-324 285-303 (330)
296 COG0172 SerS Seryl-tRNA synthe 52.3 1.7E+02 0.0037 31.6 11.5 65 256-327 42-110 (429)
297 PF08172 CASP_C: CASP C termin 52.2 54 0.0012 32.7 7.4 10 119-128 26-35 (248)
298 smart00787 Spc7 Spc7 kinetocho 51.9 2.9E+02 0.0062 28.5 15.5 13 119-131 51-64 (312)
299 PF12808 Mto2_bdg: Micro-tubul 51.8 50 0.0011 25.6 5.5 48 247-297 1-48 (52)
300 KOG3227 Calcium-responsive tra 51.8 27 0.00058 34.3 5.0 34 259-294 25-58 (231)
301 KOG0288 WD40 repeat protein Ti 51.8 1.3E+02 0.0028 32.5 10.3 42 253-294 30-71 (459)
302 PF14988 DUF4515: Domain of un 51.4 87 0.0019 30.3 8.5 48 273-320 151-198 (206)
303 PF08606 Prp19: Prp19/Pso4-lik 51.4 92 0.002 25.6 7.2 42 269-310 6-47 (70)
304 COG5185 HEC1 Protein involved 51.3 3.8E+02 0.0083 29.7 14.4 21 278-298 337-357 (622)
305 TIGR01843 type_I_hlyD type I s 51.0 2.8E+02 0.0061 28.1 14.9 23 254-276 148-170 (423)
306 KOG0994 Extracellular matrix g 50.9 1.6E+02 0.0034 36.0 11.5 22 301-322 1726-1747(1758)
307 PRK12704 phosphodiesterase; Pr 50.6 3.8E+02 0.0083 29.5 14.5 25 271-295 93-117 (520)
308 COG1340 Uncharacterized archae 50.5 2.1E+02 0.0045 29.5 11.3 83 238-324 19-101 (294)
309 PF07851 TMPIT: TMPIT-like pro 50.3 1.9E+02 0.004 30.3 11.1 26 251-276 5-30 (330)
310 TIGR03185 DNA_S_dndD DNA sulfu 50.3 2E+02 0.0043 32.1 12.2 46 253-298 205-250 (650)
311 KOG4797 Transcriptional regula 50.1 36 0.00078 30.3 5.0 25 268-292 71-95 (123)
312 PF08232 Striatin: Striatin fa 49.9 1.2E+02 0.0027 27.3 8.7 50 269-318 9-58 (134)
313 PF06810 Phage_GP20: Phage min 49.8 1.7E+02 0.0037 27.0 9.8 60 253-312 30-92 (155)
314 KOG0976 Rho/Rac1-interacting s 49.7 1.1E+02 0.0025 35.6 10.0 23 254-276 110-132 (1265)
315 PF07798 DUF1640: Protein of u 49.5 1.3E+02 0.0028 28.0 9.1 57 253-319 47-104 (177)
316 PF14988 DUF4515: Domain of un 49.4 2.5E+02 0.0055 27.1 12.9 45 258-302 157-201 (206)
317 PF00769 ERM: Ezrin/radixin/mo 49.4 1.6E+02 0.0034 29.1 10.1 92 230-321 13-111 (246)
318 PF09789 DUF2353: Uncharacteri 49.3 3.3E+02 0.0071 28.4 13.4 84 239-322 19-116 (319)
319 PF14817 HAUS5: HAUS augmin-li 49.3 2.8E+02 0.006 31.5 13.0 54 240-293 76-129 (632)
320 KOG0933 Structural maintenance 49.3 4.1E+02 0.009 32.0 14.5 52 247-298 812-863 (1174)
321 PF06810 Phage_GP20: Phage min 49.3 2.2E+02 0.0047 26.3 10.5 37 231-267 32-68 (155)
322 PF08826 DMPK_coil: DMPK coile 49.2 1.3E+02 0.0029 23.9 9.7 11 266-276 27-37 (61)
323 KOG4403 Cell surface glycoprot 49.0 1.3E+02 0.0029 32.7 9.9 60 265-324 260-320 (575)
324 PF04065 Not3: Not1 N-terminal 48.9 1.5E+02 0.0033 29.4 9.8 84 212-303 99-188 (233)
325 PF00261 Tropomyosin: Tropomyo 48.7 2.6E+02 0.0057 27.1 13.9 32 255-286 118-149 (237)
326 PRK10636 putative ABC transpor 48.7 1.5E+02 0.0033 32.9 11.0 52 251-302 564-622 (638)
327 COG3879 Uncharacterized protei 48.3 1.2E+02 0.0026 30.5 9.0 19 308-326 91-109 (247)
328 PF11500 Cut12: Spindle pole b 47.9 1.4E+02 0.0029 28.0 8.8 51 229-279 84-134 (152)
329 PF10205 KLRAQ: Predicted coil 47.8 1.7E+02 0.0036 25.7 8.8 58 263-320 11-68 (102)
330 KOG1853 LIS1-interacting prote 47.8 3.3E+02 0.0071 27.9 13.8 48 229-276 24-71 (333)
331 KOG1103 Predicted coiled-coil 47.8 2.8E+02 0.0061 29.6 11.9 77 215-295 101-177 (561)
332 PF12329 TMF_DNA_bd: TATA elem 47.5 1.5E+02 0.0033 24.1 10.1 54 248-301 10-63 (74)
333 PRK00106 hypothetical protein; 47.4 4.4E+02 0.0096 29.3 14.8 25 241-265 63-87 (535)
334 PF05529 Bap31: B-cell recepto 47.3 1.6E+02 0.0035 27.5 9.5 25 271-295 161-185 (192)
335 KOG1318 Helix loop helix trans 47.3 1.2E+02 0.0027 32.5 9.5 23 237-259 237-259 (411)
336 PF06419 COG6: Conserved oligo 47.2 3E+02 0.0064 30.8 12.9 62 249-310 44-105 (618)
337 PF10168 Nup88: Nuclear pore c 47.2 5E+02 0.011 29.9 15.4 28 249-276 578-605 (717)
338 KOG2077 JNK/SAPK-associated pr 47.2 3.5E+02 0.0075 30.7 12.9 69 237-305 344-426 (832)
339 KOG0999 Microtubule-associated 47.1 1.3E+02 0.0029 33.7 9.8 72 255-326 6-77 (772)
340 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.0 2.1E+02 0.0045 25.4 10.2 66 232-297 66-131 (132)
341 PF15290 Syntaphilin: Golgi-lo 46.9 2E+02 0.0043 29.7 10.3 50 251-305 90-144 (305)
342 PF07246 Phlebovirus_NSM: Phle 46.8 2E+02 0.0043 29.2 10.4 65 257-322 175-239 (264)
343 PF10482 CtIP_N: Tumour-suppre 46.7 1.6E+02 0.0034 26.5 8.5 47 252-298 16-62 (120)
344 PRK10361 DNA recombination pro 46.5 4.4E+02 0.0094 29.0 14.2 14 401-414 193-206 (475)
345 PF05812 Herpes_BLRF2: Herpesv 46.3 30 0.00066 31.0 4.1 29 248-276 1-29 (118)
346 PF13805 Pil1: Eisosome compon 46.2 2E+02 0.0044 29.3 10.4 63 233-300 131-194 (271)
347 KOG0996 Structural maintenance 46.1 2.9E+02 0.0062 33.7 12.8 34 40-73 30-66 (1293)
348 KOG4603 TBP-1 interacting prot 46.1 97 0.0021 29.8 7.6 20 255-274 91-110 (201)
349 KOG0243 Kinesin-like protein [ 46.0 4.1E+02 0.009 31.9 14.1 97 211-316 401-507 (1041)
350 COG5624 TAF61 Transcription in 45.9 47 0.001 35.7 6.0 35 268-302 159-193 (505)
351 cd07627 BAR_Vps5p The Bin/Amph 45.9 2.8E+02 0.006 26.5 11.2 38 233-270 98-135 (216)
352 PF12709 Kinetocho_Slk19: Cent 45.8 1.8E+02 0.0038 24.9 8.4 53 248-300 25-78 (87)
353 TIGR00634 recN DNA repair prot 45.8 1E+02 0.0023 33.7 9.0 55 254-308 172-232 (563)
354 PRK04863 mukB cell division pr 45.8 4.7E+02 0.01 32.8 15.1 17 252-268 316-332 (1486)
355 PF12808 Mto2_bdg: Micro-tubul 45.8 58 0.0013 25.2 5.0 32 247-278 19-50 (52)
356 PF04999 FtsL: Cell division p 45.7 81 0.0018 26.2 6.5 40 263-302 34-73 (97)
357 PF12777 MT: Microtubule-bindi 45.6 1.1E+02 0.0023 31.6 8.6 67 225-296 215-281 (344)
358 PF05622 HOOK: HOOK protein; 45.6 6.9 0.00015 44.0 0.0 35 242-277 318-352 (713)
359 PF06818 Fez1: Fez1; InterPro 45.5 2.3E+02 0.005 27.7 10.3 82 244-325 25-106 (202)
360 PF10168 Nup88: Nuclear pore c 45.4 3.2E+02 0.0069 31.4 13.0 44 253-296 561-604 (717)
361 TIGR00606 rad50 rad50. This fa 45.3 3.1E+02 0.0067 33.4 13.5 33 236-268 843-875 (1311)
362 TIGR02231 conserved hypothetic 45.1 3.4E+02 0.0073 29.4 12.7 16 279-294 139-154 (525)
363 PF15188 CCDC-167: Coiled-coil 45.0 1.3E+02 0.0027 25.6 7.4 55 252-306 7-64 (85)
364 TIGR02680 conserved hypothetic 44.9 4.1E+02 0.0088 32.7 14.4 13 238-250 265-277 (1353)
365 PF12128 DUF3584: Protein of u 44.7 2.8E+02 0.0061 33.5 13.0 32 97-135 564-596 (1201)
366 PF07716 bZIP_2: Basic region 44.7 64 0.0014 24.3 5.2 27 272-298 26-52 (54)
367 KOG0962 DNA repair protein RAD 44.5 4.4E+02 0.0095 32.5 14.2 22 254-275 1012-1033(1294)
368 smart00340 HALZ homeobox assoc 44.4 44 0.00095 25.0 4.0 25 274-298 8-32 (44)
369 KOG3758 Uncharacterized conser 44.2 3.2E+02 0.0069 31.1 12.2 97 215-311 34-139 (655)
370 PF07058 Myosin_HC-like: Myosi 44.1 1.3E+02 0.0028 31.3 8.7 69 259-327 2-94 (351)
371 PF14645 Chibby: Chibby family 44.0 75 0.0016 28.2 6.2 26 254-279 75-100 (116)
372 KOG4196 bZIP transcription fac 43.8 2.6E+02 0.0057 25.7 12.4 18 282-299 78-95 (135)
373 KOG4001 Axonemal dynein light 43.8 3.4E+02 0.0073 26.9 11.7 25 255-279 190-214 (259)
374 PHA03155 hypothetical protein; 43.5 30 0.00065 30.9 3.6 25 251-275 9-33 (115)
375 PF15254 CCDC14: Coiled-coil d 43.3 2.3E+02 0.0051 32.9 11.2 14 77-90 169-182 (861)
376 PF11365 DUF3166: Protein of u 43.1 1E+02 0.0022 26.7 6.7 23 254-276 5-27 (96)
377 PF04899 MbeD_MobD: MbeD/MobD 43.0 1.8E+02 0.004 23.7 10.3 32 271-302 28-59 (70)
378 KOG0249 LAR-interacting protei 43.0 3.1E+02 0.0068 31.8 12.0 47 251-298 211-257 (916)
379 PLN02320 seryl-tRNA synthetase 42.6 2.2E+02 0.0048 31.4 10.8 29 258-286 94-122 (502)
380 TIGR01069 mutS2 MutS2 family p 42.4 3.4E+02 0.0074 31.3 12.7 44 249-292 514-557 (771)
381 PF09744 Jnk-SapK_ap_N: JNK_SA 42.4 2.9E+02 0.0063 25.8 12.2 37 258-294 97-133 (158)
382 PRK15396 murein lipoprotein; P 42.0 1.8E+02 0.0039 24.3 7.8 30 253-282 28-57 (78)
383 PF05377 FlaC_arch: Flagella a 41.7 86 0.0019 24.6 5.4 32 252-283 9-40 (55)
384 PF13870 DUF4201: Domain of un 41.6 2.9E+02 0.0062 25.5 11.0 85 250-334 56-140 (177)
385 PF05008 V-SNARE: Vesicle tran 41.5 1.7E+02 0.0036 23.2 7.5 48 251-298 26-74 (79)
386 PF14645 Chibby: Chibby family 41.5 82 0.0018 27.9 6.1 11 284-294 84-94 (116)
387 KOG2129 Uncharacterized conser 41.4 71 0.0015 34.6 6.5 40 254-293 47-86 (552)
388 PF04340 DUF484: Protein of un 41.2 2.3E+02 0.0049 27.2 9.6 48 252-303 42-89 (225)
389 PHA03162 hypothetical protein; 41.1 34 0.00073 31.3 3.6 27 248-274 11-37 (135)
390 PRK14872 rod shape-determining 41.0 1.9E+02 0.0041 30.3 9.5 25 278-302 57-81 (337)
391 KOG0946 ER-Golgi vesicle-tethe 40.9 3.7E+02 0.0081 31.6 12.3 46 250-295 671-716 (970)
392 PF12999 PRKCSH-like: Glucosid 40.8 1.9E+02 0.0042 27.6 8.8 30 247-276 143-172 (176)
393 PF10212 TTKRSYEDQ: Predicted 40.8 3.5E+02 0.0075 30.1 11.8 49 254-302 431-479 (518)
394 PF07558 Shugoshin_N: Shugoshi 40.7 31 0.00067 25.8 2.8 41 232-273 4-44 (46)
395 KOG4603 TBP-1 interacting prot 40.7 3.1E+02 0.0068 26.5 10.0 23 275-297 120-142 (201)
396 KOG0996 Structural maintenance 40.7 4E+02 0.0087 32.5 12.9 70 243-312 535-604 (1293)
397 PF09763 Sec3_C: Exocyst compl 40.6 5.3E+02 0.012 29.1 13.8 36 251-286 38-73 (701)
398 PF15397 DUF4618: Domain of un 40.6 4E+02 0.0088 26.9 13.6 31 246-276 77-107 (258)
399 KOG4807 F-actin binding protei 40.2 2.6E+02 0.0056 30.3 10.4 22 299-320 439-460 (593)
400 PF06632 XRCC4: DNA double-str 40.1 4.3E+02 0.0092 27.7 12.0 28 256-283 150-177 (342)
401 PF06818 Fez1: Fez1; InterPro 40.1 2.5E+02 0.0055 27.4 9.6 28 269-296 78-105 (202)
402 PF13874 Nup54: Nucleoporin co 40.1 2.1E+02 0.0045 25.8 8.6 25 254-278 55-79 (141)
403 PF13805 Pil1: Eisosome compon 40.0 3.1E+02 0.0067 28.0 10.6 53 227-279 142-194 (271)
404 PF07111 HCR: Alpha helical co 40.0 6.5E+02 0.014 29.1 15.4 65 263-327 161-232 (739)
405 PF10498 IFT57: Intra-flagella 39.8 4.7E+02 0.01 27.5 13.5 66 258-324 274-353 (359)
406 TIGR00634 recN DNA repair prot 39.7 3.8E+02 0.0082 29.4 12.2 96 226-324 298-397 (563)
407 KOG2133 Transcriptional corepr 39.6 34 0.00074 40.2 4.2 34 204-237 796-829 (1229)
408 PF14932 HAUS-augmin3: HAUS au 39.6 3.6E+02 0.0078 26.7 11.0 28 250-277 68-95 (256)
409 PF09738 DUF2051: Double stran 39.2 3E+02 0.0065 28.3 10.6 23 267-289 108-130 (302)
410 PF05911 DUF869: Plant protein 39.0 6E+02 0.013 29.6 13.9 19 284-302 672-690 (769)
411 PF04340 DUF484: Protein of un 39.0 1.3E+02 0.0028 28.8 7.6 38 272-309 41-78 (225)
412 PF12795 MscS_porin: Mechanose 39.0 3.7E+02 0.008 26.0 13.1 22 258-279 151-172 (240)
413 PF02388 FemAB: FemAB family; 39.0 1.7E+02 0.0038 30.7 9.1 25 250-274 242-266 (406)
414 KOG2991 Splicing regulator [RN 39.0 1.5E+02 0.0033 30.2 8.1 28 297-324 283-310 (330)
415 PF08647 BRE1: BRE1 E3 ubiquit 38.8 2.4E+02 0.0052 23.8 13.7 63 232-294 6-68 (96)
416 PRK10698 phage shock protein P 38.7 3.8E+02 0.0082 26.1 13.0 35 260-294 102-136 (222)
417 PRK00409 recombination and DNA 38.4 4E+02 0.0087 30.8 12.5 42 250-291 520-561 (782)
418 PRK00409 recombination and DNA 38.3 5.3E+02 0.011 29.9 13.4 29 228-256 515-543 (782)
419 PRK00888 ftsB cell division pr 38.2 1.2E+02 0.0027 26.2 6.6 27 250-276 34-60 (105)
420 PF12711 Kinesin-relat_1: Kine 38.2 98 0.0021 26.3 5.8 39 284-322 23-67 (86)
421 PF06632 XRCC4: DNA double-str 38.1 4.8E+02 0.01 27.4 12.0 38 252-289 139-176 (342)
422 PF12507 HCMV_UL139: Human Cyt 38.1 3.1E+02 0.0067 24.8 9.4 71 254-324 34-104 (121)
423 PF08826 DMPK_coil: DMPK coile 38.0 2.1E+02 0.0045 22.8 8.6 10 309-318 42-51 (61)
424 PF13815 Dzip-like_N: Iguana/D 37.9 2.2E+02 0.0048 24.8 8.3 23 227-249 28-50 (118)
425 PF12128 DUF3584: Protein of u 37.9 7.7E+02 0.017 29.9 15.2 19 253-271 681-699 (1201)
426 KOG4460 Nuclear pore complex, 37.8 4.3E+02 0.0093 29.9 11.8 35 249-283 601-635 (741)
427 PF09787 Golgin_A5: Golgin sub 37.7 4.3E+02 0.0092 28.8 12.1 101 219-319 231-350 (511)
428 KOG2189 Vacuolar H+-ATPase V0 37.7 2.5E+02 0.0054 32.7 10.4 32 267-298 95-126 (829)
429 cd00632 Prefoldin_beta Prefold 37.4 1.2E+02 0.0026 25.7 6.4 39 248-286 61-99 (105)
430 PF10174 Cast: RIM-binding pro 37.4 4.4E+02 0.0094 30.7 12.5 28 271-298 364-391 (775)
431 COG0497 RecN ATPase involved i 37.2 5.6E+02 0.012 28.8 12.8 103 220-326 289-395 (557)
432 KOG0994 Extracellular matrix g 36.9 1.7E+02 0.0037 35.6 9.2 28 271-298 1267-1294(1758)
433 PRK10929 putative mechanosensi 36.9 7.2E+02 0.016 30.3 14.5 41 262-302 263-303 (1109)
434 PF03670 UPF0184: Uncharacteri 36.9 2.2E+02 0.0047 24.2 7.5 36 253-295 36-71 (83)
435 PF04642 DUF601: Protein of un 36.4 1.4E+02 0.003 30.4 7.4 50 250-299 217-273 (311)
436 KOG0963 Transcription factor/C 36.4 5.7E+02 0.012 29.1 12.7 45 276-321 315-359 (629)
437 PF05769 DUF837: Protein of un 36.2 3.9E+02 0.0084 25.4 11.1 19 279-297 71-89 (181)
438 COG1842 PspA Phage shock prote 36.1 3.4E+02 0.0074 26.7 10.0 62 249-310 91-152 (225)
439 PF06008 Laminin_I: Laminin Do 36.0 4.3E+02 0.0093 25.9 12.3 49 252-300 47-95 (264)
440 PRK01156 chromosome segregatio 36.0 7.3E+02 0.016 28.6 15.0 17 308-324 432-448 (895)
441 TIGR02680 conserved hypothetic 35.5 7.2E+02 0.016 30.7 14.6 34 242-275 874-907 (1353)
442 KOG1899 LAR transmembrane tyro 35.4 2.3E+02 0.005 32.4 9.5 37 244-280 161-197 (861)
443 PF07407 Seadorna_VP6: Seadorn 35.4 97 0.0021 32.6 6.3 24 260-283 35-58 (420)
444 cd07665 BAR_SNX1 The Bin/Amphi 35.3 3.7E+02 0.008 26.6 10.2 31 246-276 25-55 (234)
445 PRK14011 prefoldin subunit alp 35.0 2E+02 0.0043 26.5 7.7 6 201-206 76-81 (144)
446 PF06210 DUF1003: Protein of u 34.9 1.7E+02 0.0036 25.7 6.9 42 234-280 55-96 (108)
447 PF02050 FliJ: Flagellar FliJ 34.6 2.5E+02 0.0054 22.8 11.8 77 246-322 1-82 (123)
448 PF04129 Vps52: Vps52 / Sac2 f 34.6 4.6E+02 0.01 28.6 11.7 57 252-308 16-72 (508)
449 PF10779 XhlA: Haemolysin XhlA 34.5 2.2E+02 0.0048 22.7 7.1 42 257-298 6-47 (71)
450 COG1792 MreC Cell shape-determ 34.5 2.3E+02 0.005 28.6 8.9 39 282-324 70-108 (284)
451 PF13118 DUF3972: Protein of u 34.2 3.3E+02 0.0071 24.8 8.8 38 277-314 84-121 (126)
452 KOG2483 Upstream transcription 33.9 88 0.0019 31.1 5.6 39 246-298 101-139 (232)
453 PF05701 WEMBL: Weak chloropla 33.9 6.7E+02 0.014 27.5 14.7 65 258-322 289-353 (522)
454 PRK11281 hypothetical protein; 33.8 3.5E+02 0.0076 32.7 11.4 55 226-280 156-215 (1113)
455 KOG3654 Uncharacterized CH dom 33.7 7.3E+02 0.016 27.9 20.6 32 229-260 392-423 (708)
456 PF04899 MbeD_MobD: MbeD/MobD 33.6 2.7E+02 0.0057 22.8 7.9 33 267-299 31-63 (70)
457 PF06698 DUF1192: Protein of u 33.4 1.3E+02 0.0029 23.8 5.4 24 252-275 23-46 (59)
458 PLN02678 seryl-tRNA synthetase 33.4 2.5E+02 0.0055 30.4 9.4 68 254-324 44-114 (448)
459 PHA03011 hypothetical protein; 33.3 3E+02 0.0066 24.3 8.1 53 267-319 60-112 (120)
460 PF06752 E_Pc_C: Enhancer of P 33.0 42 0.00091 33.3 3.2 30 366-395 4-33 (230)
461 KOG4407 Predicted Rho GTPase-a 32.9 21 0.00046 43.2 1.3 31 370-400 324-375 (1973)
462 KOG0979 Structural maintenance 32.8 5.5E+02 0.012 30.9 12.3 94 215-318 625-718 (1072)
463 PF07989 Microtub_assoc: Micro 32.5 1.4E+02 0.0031 24.4 5.7 50 273-322 2-52 (75)
464 PF13815 Dzip-like_N: Iguana/D 32.4 2.5E+02 0.0053 24.5 7.6 51 252-302 68-118 (118)
465 KOG0612 Rho-associated, coiled 32.4 7.7E+02 0.017 30.4 13.5 92 225-319 443-535 (1317)
466 COG3167 PilO Tfp pilus assembl 32.3 2.4E+02 0.0052 27.6 8.0 71 248-323 47-117 (211)
467 PF05335 DUF745: Protein of un 32.3 4.6E+02 0.01 25.2 12.0 75 248-322 65-160 (188)
468 PF04871 Uso1_p115_C: Uso1 / p 32.2 3.8E+02 0.0083 24.2 10.4 70 248-323 25-94 (136)
469 KOG3878 Protein involved in ma 32.2 6.5E+02 0.014 26.8 12.3 109 245-393 129-237 (469)
470 PRK04778 septation ring format 32.0 7.3E+02 0.016 27.4 15.1 115 202-320 273-411 (569)
471 TIGR01000 bacteriocin_acc bact 31.9 2.8E+02 0.006 29.5 9.4 75 248-322 234-321 (457)
472 PRK04778 septation ring format 31.7 7.3E+02 0.016 27.4 12.8 91 229-319 289-389 (569)
473 PF05300 DUF737: Protein of un 31.6 1.7E+02 0.0036 28.2 6.9 50 234-283 118-167 (187)
474 PRK11546 zraP zinc resistance 31.6 4.2E+02 0.0092 24.5 9.9 94 250-346 47-140 (143)
475 PF10477 EIF4E-T: Nucleocytopl 31.3 30 0.00066 38.4 2.1 80 317-396 464-543 (578)
476 COG4372 Uncharacterized protei 31.3 7.1E+02 0.015 27.0 20.4 168 206-396 74-246 (499)
477 PF15619 Lebercilin: Ciliary p 31.2 4.8E+02 0.01 25.0 12.6 87 230-316 61-149 (194)
478 COG1792 MreC Cell shape-determ 31.2 2.9E+02 0.0062 28.0 8.9 58 233-294 49-106 (284)
479 PF07111 HCR: Alpha helical co 31.1 7.8E+02 0.017 28.5 12.8 89 223-317 296-384 (739)
480 cd07429 Cby_like Chibby, a nuc 30.9 81 0.0018 27.9 4.3 27 271-297 72-98 (108)
481 PF04949 Transcrip_act: Transc 30.8 4.6E+02 0.01 24.7 14.8 121 200-320 13-147 (159)
482 KOG2072 Translation initiation 30.7 7.8E+02 0.017 29.2 12.8 102 217-322 596-711 (988)
483 TIGR02209 ftsL_broad cell divi 30.7 1.2E+02 0.0025 24.4 5.0 30 247-276 28-57 (85)
484 KOG0018 Structural maintenance 30.7 6.3E+02 0.014 30.6 12.3 88 236-323 388-479 (1141)
485 PHA02109 hypothetical protein 30.6 1.3E+02 0.0029 29.0 5.9 39 248-286 191-229 (233)
486 PRK11147 ABC transporter ATPas 30.5 2.2E+02 0.0048 31.6 8.7 73 236-309 555-633 (635)
487 KOG0244 Kinesin-like protein [ 30.5 2.7E+02 0.006 32.8 9.4 92 231-322 490-595 (913)
488 TIGR01554 major_cap_HK97 phage 30.5 2.9E+02 0.0062 28.5 9.0 72 252-323 1-72 (378)
489 TIGR01005 eps_transp_fam exopo 30.4 3.2E+02 0.007 30.9 10.0 86 231-316 182-268 (754)
490 KOG4797 Transcriptional regula 30.3 1.2E+02 0.0026 27.1 5.2 32 240-271 64-95 (123)
491 KOG0964 Structural maintenance 30.3 9.4E+02 0.02 29.2 13.5 91 229-319 397-487 (1200)
492 PF14282 FlxA: FlxA-like prote 30.3 2.7E+02 0.0059 24.0 7.4 52 249-300 25-80 (106)
493 TIGR03495 phage_LysB phage lys 30.2 4.3E+02 0.0094 24.2 11.0 69 251-319 20-88 (135)
494 PF14257 DUF4349: Domain of un 30.1 3E+02 0.0064 26.9 8.6 56 249-305 132-189 (262)
495 KOG3433 Protein involved in me 30.0 5.3E+02 0.011 25.2 10.3 73 241-313 72-144 (203)
496 KOG1850 Myosin-like coiled-coi 30.0 4.1E+02 0.0089 28.0 9.7 72 247-318 247-318 (391)
497 PF13874 Nup54: Nucleoporin co 30.0 4.1E+02 0.0089 23.9 9.2 71 249-319 43-113 (141)
498 PF03961 DUF342: Protein of un 29.9 4.3E+02 0.0094 28.1 10.4 70 249-318 333-408 (451)
499 PF05600 DUF773: Protein of un 29.5 3.7E+02 0.0079 29.6 9.9 62 249-310 431-492 (507)
500 PHA03011 hypothetical protein; 29.5 3.6E+02 0.0079 23.9 7.9 63 256-318 56-118 (120)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.31 E-value=1.4e-11 Score=96.71 Aligned_cols=62 Identities=42% Similarity=0.533 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 287 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN 287 (426)
.|+|+.+|+++||+||++||+||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999998877766666554
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.22 E-value=8.5e-11 Score=92.07 Aligned_cols=62 Identities=40% Similarity=0.625 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENS 288 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~ 288 (426)
+.|+.+|+++||+||++||.||+.||.+||.+|..|+.+|..|..++..|...+..|..+|.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46899999999999999999999999999999999999999999999999888888888773
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.95 E-value=4.8e-09 Score=101.37 Aligned_cols=84 Identities=26% Similarity=0.367 Sum_probs=77.1
Q ss_pred HHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 218 AKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 218 ~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.+|..|. -+.|-.||+|+||++|+-+|.|||..++++|..|..|..||..|..+...|++.+..|..+|.+|..+|..+
T Consensus 59 ~RL~HLS-~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 59 RRLDHLS-WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HhhcccC-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5666665 367899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHH
Q 014327 298 EQQVH 302 (426)
Q Consensus 298 eQQ~q 302 (426)
.+.+.
T Consensus 138 ~~~l~ 142 (292)
T KOG4005|consen 138 RQELA 142 (292)
T ss_pred HHHHH
Confidence 77654
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.93 E-value=5.1e-09 Score=79.70 Aligned_cols=52 Identities=38% Similarity=0.544 Sum_probs=47.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.|+++.||+ +||+||++||+||+.|+.+||.+|..|+.+|..|..++..|..
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888888 9999999999999999999999999999999999988887764
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.92 E-value=1.8e-09 Score=113.75 Aligned_cols=64 Identities=36% Similarity=0.539 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
-||..|||+||+||..||+|||+|+..||.+++.|..||..|+++...|++++..|..||..+|
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 4778899999999999999999999999999999999999999999999999999999999986
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.84 E-value=4.6e-09 Score=103.90 Aligned_cols=53 Identities=28% Similarity=0.440 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
.||.-|+++|||+|+.||.|||+||++||.+|..|+..|..|-.+|..|..-+
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999988887775533
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.74 E-value=1.4e-08 Score=105.85 Aligned_cols=66 Identities=29% Similarity=0.393 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
+.||+||+|||++||+.||.|||.||+.||.+|....+||..|.+++..|...+..|....+.|..
T Consensus 249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999998888776665555555544443
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.10 E-value=5.4e-08 Score=81.69 Aligned_cols=76 Identities=25% Similarity=0.410 Sum_probs=55.7
Q ss_pred hhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 209 ADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 209 ~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
.|+++.+ ..|.+-...+.|.+||.++||.+|++||.||+.++.+||..+..|..+...|..++..+......+...
T Consensus 12 ~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~ 87 (92)
T PF03131_consen 12 REFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRK 87 (92)
T ss_dssp HHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_pred HHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 333333445579999999999999999999999999999999888887777777766666555444433
No 9
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=98.06 E-value=0.00014 Score=78.86 Aligned_cols=89 Identities=29% Similarity=0.364 Sum_probs=72.1
Q ss_pred CchhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 207 PSADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 207 ~~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
+.++++.-++.++|.+..+.-.+-+||+=+||.||+++|.||+.-|.+||..|..|+.|-.+|. ++...+..+
T Consensus 468 p~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl-------~Er~~~d~~ 540 (604)
T KOG3863|consen 468 PVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLL-------RERDELDST 540 (604)
T ss_pred cHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3455666678888887776668999999999999999999999999999999988877766655 445566778
Q ss_pred HHHHHHHHHHHHHHHH
Q 014327 287 NSELKLRLQTMEQQVH 302 (426)
Q Consensus 287 N~eLK~rLqaLeQQ~q 302 (426)
..++|.+|..|.+.+-
T Consensus 541 L~~~kqqls~L~~~Vf 556 (604)
T KOG3863|consen 541 LGVMKQQLSELYQEVF 556 (604)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887653
No 10
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.97 E-value=2.3e-05 Score=77.06 Aligned_cols=52 Identities=31% Similarity=0.480 Sum_probs=43.4
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 228 PKRAKR-IWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 228 pKR~KR-il~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
..|++| .++||++|.+||.||+++|..||.+|.+|..+|..|...+..|.+.
T Consensus 204 ~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 204 KIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 344444 6899999999999999999999999999999999888777665443
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.92 E-value=0.0047 Score=62.01 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=40.4
Q ss_pred cChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRI-WANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 226 ~DpKR~KRi-l~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+++|+.+|. ..|..+|.|.|+||+.-.++|+..++.|+.+|..|+.++..|.+
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555553 45566799999999999999999998888888877777665444
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.67 E-value=0.015 Score=52.22 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
-.|..||-|+||-.|+-+|-|+...-.+||.+-..|..+..+|..+ +..+..|...++.++++|
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999888887665555544444433 333444555555544443
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.43 E-value=0.021 Score=56.94 Aligned_cols=54 Identities=22% Similarity=0.425 Sum_probs=45.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
.|++=..|+-+|=++|+|||.+.+.-..++..+|..|+.||..|+.+|..|+++
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666789999999999999999999999999999988888877765543
No 14
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.52 E-value=0.63 Score=41.95 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 243 RSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 243 RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
..|.|-+.+.+.|+.++..+..++..|...+..|..++..+..+...+..+...+..+..-....+..+++|+.+|+...
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555555554444444555555555555433
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.08 E-value=0.46 Score=38.77 Aligned_cols=52 Identities=27% Similarity=0.329 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
.-++.||.||+.+=..+..|..++..|...+..|..+|..|+.....|.+..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3467889999888888888888888888888888888888888877776543
No 16
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.34 E-value=0.85 Score=45.23 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=73.2
Q ss_pred hhccHHHHhhhhhcChHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 014327 213 KAMSAAKLAELALIDPKRAKRIWANRQSAAR--SKERKMRY-IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSE 289 (426)
Q Consensus 213 k~~~~~~l~ela~~DpKR~KRil~NReSA~R--SReRKkqy-ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~e 289 (426)
|.-.-+-|+--..++-|++|-+++---+--| .|+-++.| |.+|+.+-+.|+.||..|++....|-.++..|.++..+
T Consensus 57 Kr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 57 KRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444555555678888866655444333 34445555 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 290 LKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 290 LK~rLqaLeQQ~qLrdALn 308 (426)
+++.|..+.++++..-...
T Consensus 137 ~~~~l~~~~~~~~~~~~v~ 155 (292)
T KOG4005|consen 137 LRQELAELKQQQQHNTRVI 155 (292)
T ss_pred HHHHHHhhHHHHHHhhHHH
Confidence 9999999999988654433
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.17 E-value=0.22 Score=43.53 Aligned_cols=49 Identities=33% Similarity=0.445 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
.|.+||..+..|-.+...|+.++..|-.++..|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888888888888888888888888877765
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.98 E-value=0.91 Score=36.70 Aligned_cols=59 Identities=25% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
||..|.+|+..+..+..++......+..|..|+...-. ++......+..|+.|+..|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~-------~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAER-------QLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444444444444444433 344333444445555554443
No 19
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.90 E-value=0.57 Score=37.89 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..+..|.+++...+.++..|..+-............+|..|+.++..+..+
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888888887777777777778888888877777665
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.84 E-value=0.7 Score=44.61 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEI 315 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EV 315 (426)
.+......+..|..||.+|+.+++.+..++...++.++.+++.+
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555555544444555544443
No 21
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.68 E-value=0.29 Score=43.01 Aligned_cols=48 Identities=31% Similarity=0.460 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+..||..+..|..+...|+..+..|-.++..|..||..|+.+|..++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467888888888888888888888888888888888888888887763
No 22
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.47 E-value=1.5 Score=41.42 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.++++.+.+.+..-..-.......|.+++.-++.|+.|...|..++..+......|..||.+|-.|.-..
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555667777777888888888888888888888888888888887775333
No 23
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.36 E-value=4.6 Score=37.02 Aligned_cols=73 Identities=18% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+-+.....|++.+-+--+-++..|..|+.++..+..+...|...+..+......|..+....+.+|..|+...
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455567788888888889999999999999999999999988888888888777777777777777776543
No 24
>PRK11637 AmiB activator; Provisional
Probab=93.21 E-value=8.1 Score=40.61 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+++.++..|..+...+..++..+++++..+..+...+..+|
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 25
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.21 E-value=3.5 Score=40.60 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 014327 243 RSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL- 321 (426)
Q Consensus 243 RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva- 321 (426)
.+=+....+|.+++.....|..|-.....+|..+..++..|+..-+.++.........+.........|+.+|.++|..
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455789999999999999999999999999999999999999998888887777776777888899999999988
Q ss_pred hccCC
Q 014327 322 TGQAM 326 (426)
Q Consensus 322 aGq~~ 326 (426)
.|...
T Consensus 105 lgl~~ 109 (230)
T PF10146_consen 105 LGLEP 109 (230)
T ss_pred cCCCC
Confidence 66543
No 26
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.54 E-value=0.6 Score=37.43 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
..|.+||.++..++..+..|...|...++++..|..+...|..+|..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999988888888887775
No 27
>PRK00295 hypothetical protein; Provisional
Probab=92.34 E-value=0.91 Score=36.47 Aligned_cols=47 Identities=23% Similarity=0.214 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.|.+||.++..++..+..|...|...++++..|..+.+.|..+|..+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999998888877777777776665554
No 28
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.31 E-value=2.7 Score=44.87 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH--------HHH-------
Q 014327 241 AARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH--------LQD------- 305 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q--------Lrd------- 305 (426)
++..|++-. .++.|+.+++.|..||+.|+..++.|.-.+..|..+...+..+|+.+.-++. +.+
T Consensus 289 ~k~eReasl-e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ 367 (502)
T KOG0982|consen 289 IKKEREASL-EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQE 367 (502)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333 3677888999999999999999998888888877776555555544432211 111
Q ss_pred ------HHHHHHHHHHHHHHhhhccCC
Q 014327 306 ------ALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 306 ------ALnEaLk~EVqrLRvaaGq~~ 326 (426)
-|.+.|.+++++||...+...
T Consensus 368 ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 368 EKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334667888888887766544
No 29
>PRK00736 hypothetical protein; Provisional
Probab=92.26 E-value=0.84 Score=36.67 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
..|.+||.|+..++..+..|...|...++++..|..+...|..++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999998888877777666666665544
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.17 E-value=6.8 Score=38.87 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=31.9
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 225 LIDPKRAKRIWANRQSAARSKERKMRY----------IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 225 ~~DpKR~KRil~NReSA~RSReRKkqy----------ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+.|-+...+.+..+..+.|.|..+.++ +..|+..+.+++....+|..++..+......|..+...++.++
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443332 3334444444444444444444444444444444444444444
Q ss_pred HHHH
Q 014327 295 QTME 298 (426)
Q Consensus 295 qaLe 298 (426)
..++
T Consensus 134 ~~~e 137 (239)
T COG1579 134 ERLE 137 (239)
T ss_pred HHHH
Confidence 4443
No 31
>PRK04325 hypothetical protein; Provisional
Probab=92.06 E-value=0.86 Score=37.21 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
.|.+||.+|..++..+..|..-|+..++++..|..+.+.|..+|..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999998888888777776666666555444
No 32
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.81 E-value=0.96 Score=36.74 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
..|.+||.+|...+..+..|..-|+..++++..|..+.+.|..+|..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999998889998888888888777776666666655443
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.66 E-value=2.5 Score=34.65 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
|.-.|..|+.+|..|..++..++.....|..||..||.
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 34
>PRK02119 hypothetical protein; Provisional
Probab=91.49 E-value=1.1 Score=36.59 Aligned_cols=47 Identities=21% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
..|.+||.+|...+..+..|...|+..++++..|..+.+.|..+|..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888888888877777776666666555544
No 35
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.45 E-value=1.8 Score=34.86 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
|+.|-..++.|+.||..|+.++..+..+...|...|...+.+|++|-.+
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666666666666666666655555555555555433
No 36
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.32 E-value=4.7 Score=38.84 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
...|..+|.+|+.||.+|..+...+..++..|.+++..|+.+|-..+.
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999988844443
No 37
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.14 E-value=0.82 Score=43.16 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEI 315 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EV 315 (426)
.-|.+|+..+..|+.++..|...+......+..|..|.-.|..++..++.++.-....|..|.+..
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666666666666666666666666666666655555555555554443
No 38
>PRK04406 hypothetical protein; Provisional
Probab=91.13 E-value=1.2 Score=36.56 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
..|.+||.++..++..+..|...|...++++..|..+.+.|..+|.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888777777776666655555555443
No 39
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=90.66 E-value=3.5 Score=33.81 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTN--------GLTAENSELKLRLQTMEQQVHLQDALNDALK 312 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~--------~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk 312 (426)
+.+.|..+..|..||=.|.-++-.|..... .+..+|-+||..+..|..++.-...+...+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999988888866554 5678888999988888887765544444333
No 40
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.57 E-value=5.7 Score=33.52 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+|+.+.|.+-+++-.-|.-+.+-..+||.+|+.|....+.|..+|......+..|+.-|.++..+|...-
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888887888789999999999999999999999999999999999999999986554
No 41
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.44 E-value=4.9 Score=33.57 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSE 289 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~e 289 (426)
-++.||.||+..=..+.-|.-++..|...+..|..|+..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777665555554544444444444444444333
No 42
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.39 E-value=3.5 Score=33.18 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+..||.||..|=.....|..++..|..+...+..|+..|+.+++.-..++
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788777777777777777777777777777777777665554443
No 43
>PRK11637 AmiB activator; Provisional
Probab=90.29 E-value=7.8 Score=40.73 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDA 306 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdA 306 (426)
|-+-+..+...|......+..-..-+.+|+..+..++.+...|..+....+.....|..+..++...|..|+........
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333444444444444444555555444444444445555555555555555444433333
Q ss_pred HHH
Q 014327 307 LND 309 (426)
Q Consensus 307 LnE 309 (426)
+.+
T Consensus 248 ~I~ 250 (428)
T PRK11637 248 SIA 250 (428)
T ss_pred HHH
Confidence 333
No 44
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.29 E-value=14 Score=33.87 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALn 308 (426)
.|.+|+.+...+...+..|..+...|..|+..|...++.+..++.-.+..+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444455555555555555555555555554444444
No 45
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.20 E-value=1.5 Score=36.60 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
++|..++..|+.....|..++...+.++..|..||..|...|..|...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888889999999999999999999999999999888543
No 46
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.18 E-value=11 Score=36.03 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
-|-+-++.+|....+-+..+.+.+.+...||.++..-..+...+...+..|.+.+..|..+
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888899989998888776555555555554444444433333
No 47
>PRK00846 hypothetical protein; Provisional
Probab=90.10 E-value=1.8 Score=35.89 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+|.+||.++...+.....|...++..++.+..|..+.+.|+.+|..++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678899999888888888888888888877777777666666665554
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.03 E-value=6.7 Score=44.39 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhccC
Q 014327 311 LKEEIQHLKVLTGQA 325 (426)
Q Consensus 311 Lk~EVqrLRvaaGq~ 325 (426)
-..||..||.-..++
T Consensus 641 ~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 641 KDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666544443
No 49
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.76 E-value=7.7 Score=31.90 Aligned_cols=69 Identities=32% Similarity=0.421 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccC
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEI----QHLKVLTGQA 325 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EV----qrLRvaaGq~ 325 (426)
.-++.||.||+..=.. +++|+-.+..|..+|..|....+.+.......+..|+.|+.|. .|||.+.|-+
T Consensus 4 Ev~ekLE~KiqqAvdT-------I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 4 EVFEKLEAKVQQAIDT-------ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3466788888654443 4444555555555555555555544444333344456666553 5677776654
No 50
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.40 E-value=6.2 Score=46.28 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
..|++||.+|+.++.+...+...+..+...+..|..+...|+.+|
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444433333333333333333333
No 51
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.30 E-value=15 Score=35.65 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
.+..+++++.++..|+.+...+..++...++.+..+..++...+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333
No 52
>PRK09039 hypothetical protein; Validated
Probab=89.28 E-value=11 Score=39.08 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
++..++.+.+....++..|++++..|..+...|...|...+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333343334444444444444444444444443333
No 53
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.13 E-value=12 Score=38.21 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 241 AARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
...-..+..+.+.+||.....|..|...|..+...+.+.-...-.+.+.+..++..+..+........+.+..++.+|+.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566667777777777777777777777766666666677777777777777666666677777888888886
Q ss_pred hh
Q 014327 321 LT 322 (426)
Q Consensus 321 aa 322 (426)
..
T Consensus 135 tN 136 (314)
T PF04111_consen 135 TN 136 (314)
T ss_dssp --
T ss_pred cC
Confidence 54
No 54
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.03 E-value=5 Score=33.53 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
-|.-|.-+|..|+.+|..|..++..+......|..||..||...
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666555666666666666543
No 55
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.94 E-value=2.4 Score=37.10 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+|-.+|..|+.....|..++..|...+..|..||..|+.+.+.|+..+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999998888876654
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.77 E-value=11 Score=42.86 Aligned_cols=81 Identities=15% Similarity=0.297 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----------------------HHHHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNG----------------------LTAENSELKLRLQTME 298 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~----------------------L~sEN~eLK~rLqaLe 298 (426)
.-++|++-++-|..||+|+..++.....|.++|...++.... +...-++|..++..|+
T Consensus 479 L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr 558 (697)
T PF09726_consen 479 LVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLR 558 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHH
Confidence 456688888889999999999998888888888877654322 3333444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 014327 299 QQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 299 QQ~qLrdALnEaLk~EVqrLRva 321 (426)
.+++.++-....|+.|++.||..
T Consensus 559 ~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 559 RELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777888888888876
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.31 E-value=4 Score=39.30 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
|++|+..-+.|..||..|...+..+...+..|..|+..|+.++..+.
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q 56 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ 56 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555544443
No 58
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.15 E-value=2.4 Score=45.83 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+++||.++..|+.|...|.+++..+++.+..|+.||..|+.++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999899999999999999999999888876
No 59
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.92 E-value=5.3 Score=37.50 Aligned_cols=57 Identities=30% Similarity=0.363 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
....+..||..|..++..|+..+..|..||..|+.++..++.. +++|-.-+.|.|..
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD-------Y~~L~~Im~RARkl 154 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED-------YQTLIDIMDRARKL 154 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4667778888888888888888888888888888777666644 34555555555544
No 60
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=87.91 E-value=1.9 Score=37.98 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
-+.+||..|.+|-++...|++.+..+-.++..|..||..|+.+|..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3567777777777777777777777777777777777777777655
No 61
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.67 E-value=4.7 Score=44.80 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR-----------------LQTMEQQVHLQDALNDALKE 313 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r-----------------LqaLeQQ~qLrdALnEaLk~ 313 (426)
.|..|+.+|+.|+.||..|...+..+.+.+..|..+...++.+ +..|+..+.-..-..+.|+.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666665555444433 34444444444445567777
Q ss_pred HHHHHHhhh
Q 014327 314 EIQHLKVLT 322 (426)
Q Consensus 314 EVqrLRvaa 322 (426)
++.+|+...
T Consensus 503 ~l~~l~k~~ 511 (652)
T COG2433 503 KLAELRKMR 511 (652)
T ss_pred HHHHHHHHH
Confidence 777777433
No 62
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.16 E-value=12 Score=39.96 Aligned_cols=73 Identities=29% Similarity=0.346 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
||++.+-++=+.-.++......-...||..++.+++++..+..++.....+...+...+..+..+|..|+.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555544444444455556667888888888888888888888888877777777777777777777665
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.13 E-value=26 Score=34.88 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
+|-++.+..-.+.+.+.-+-+..-+++|+.+|..++.+...++.++..
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444555555555555555555555444444333
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.13 E-value=12 Score=36.26 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDAL 307 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdAL 307 (426)
..+|..++..+..+...|..++..|.++...+..|+..|+.++..+.....++--+
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~ 175 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFM 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555555555544444333
No 65
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=86.77 E-value=31 Score=33.31 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLS 270 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls 270 (426)
.+|+||..+.+.++-.-+-+-++ +..++++..-.|+..|+
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~---evNrrlQ~hl~EIR~LK 61 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMK---EVNRRLQQHLNEIRGLK 61 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH
Confidence 47888888888887766554433 44444443333333333
No 66
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.51 E-value=4 Score=35.97 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.+|-.+|..|+.....|..++..|...+..|..||..|+.+.+.|+..+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999988777765544
No 67
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.41 E-value=19 Score=30.47 Aligned_cols=49 Identities=33% Similarity=0.543 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQR---DTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqr---q~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.|..++..|+.+-+.++.++..+.. +...|..+-..|+.++..++.++.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544 355566666666666666665443
No 68
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.34 E-value=12 Score=30.65 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
|.-|..+|..|+.+|..|..+...|...+..|..|....+.+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333333333333333333
No 69
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.31 E-value=25 Score=31.66 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 290 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eL 290 (426)
.+..|-+..|+.......++..-++.|+..+..|+.++..+..++..++.....|..+++.+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555544444444444443333
No 70
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.08 E-value=3.9 Score=44.14 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDT-NGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~-~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+..|+..-+.|..||..|+++...+..++ ..|..+..++..+.+.|..+.+
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34556666666666666665555543333 3444666677766666665544
No 71
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.95 E-value=13 Score=37.81 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
+-..++..|+.||..|......|.+...-|.-+...=...|.-|+.++.-.-...+.|..|+-++|
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333333333322222333333333322233444555554444
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.93 E-value=30 Score=33.79 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 287 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN 287 (426)
-+..+..|+.++..|+..|..|...+..++..+..|..+.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi 93 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI 93 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443333
No 73
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.62 E-value=26 Score=41.49 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAELERKV-QTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kV-q~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
.+++..+..+.|.+++..+ +.+..+...+..++..|..++..|+..+..|+.+++.+...+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555554 444444444455555555555555555555555554444443
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.51 E-value=12 Score=34.18 Aligned_cols=57 Identities=26% Similarity=0.362 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH---HHHHHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTA---ENSELKLRLQTMEQQVH 302 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~s---EN~eLK~rLqaLeQQ~q 302 (426)
.+|-.-|..|..++..|+.+...+..+|..+......... .+-.|..+|+.|+.++-
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 4455556666666666666666666655555443333322 23345555655555544
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.50 E-value=21 Score=31.88 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhh
Q 014327 308 NDALKEEIQHLKVL 321 (426)
Q Consensus 308 nEaLk~EVqrLRva 321 (426)
.+.|+..|..||..
T Consensus 98 veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 98 VEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666555543
No 76
>PRK09039 hypothetical protein; Validated
Probab=84.80 E-value=30 Score=35.78 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.-.+|..|+.+...|+.++..|+..+..++.+..+.+.+|+.|.
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555554
No 77
>KOG3227 consensus Calcium-responsive transcription coactivator [Transcription]
Probab=84.64 E-value=2.5 Score=41.17 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=23.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccCC
Q 014327 279 DTNGLTAENSELKLRLQTMEQQVHLQDAL--NDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 279 q~~~L~sEN~eLK~rLqaLeQQ~qLrdAL--nEaLk~EVqrLRvaaGq~~ 326 (426)
.+..+..||+.|-.+|-+....-++.|.. ...|.+.+..|...+...+
T Consensus 24 ~IQk~LdEN~~LI~~I~e~Qn~Gk~~EC~qyq~~LhrNL~YLA~iAD~qp 73 (231)
T KOG3227|consen 24 QIQKMLDENKHLIQCIVESQNKGKLSECAQYQALLHRNLVYLATIADSQP 73 (231)
T ss_pred HHHHHHHhhhHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHhhcCC
Confidence 33445556666655554444333332211 2345566666665555433
No 78
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.57 E-value=24 Score=39.06 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 234 IWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 234 il~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
+++...........-+..+..|+..+...+.++..|..+...+......|..|+..|+.
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444444333
No 79
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.05 E-value=18 Score=38.63 Aligned_cols=95 Identities=28% Similarity=0.358 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARS--KERKMRYIAELERKVQTLQT--------------EATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 233 Ril~NReSA~RS--ReRKkqyieeLE~kVq~Lq~--------------ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
|+|+.--+|--| -.-|..|-++||+.+..-+. +...+..++..|..++....-||..|...+++
T Consensus 374 rLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEa 453 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEA 453 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 35678888888887654332 34445555666666666666677776665544
Q ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHhh-hccCCC
Q 014327 297 MEQQVHL-----------QDALNDALKEEIQHLKVL-TGQAMP 327 (426)
Q Consensus 297 LeQQ~qL-----------rdALnEaLk~EVqrLRva-aGq~~~ 327 (426)
-++-+.. ..-||..|.+||.+||-. +|.+++
T Consensus 454 erqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgG 496 (593)
T KOG4807|consen 454 ERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGG 496 (593)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCC
Confidence 3332221 124567788999999965 444443
No 80
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.05 E-value=14 Score=41.70 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD---ALNDALKEEIQHLKVL 321 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd---ALnEaLk~EVqrLRva 321 (426)
|..|..++..|+.+...|..++..+.+.+.....++..+..+|..+...+..+. .++..|..+|..||-.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 778888888888888888888888888888888888888888877777766655 7777888888888743
No 81
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.83 E-value=31 Score=42.49 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYI-------------AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyi-------------eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
++++.+-+.++.|.+.+.-+.+++ ++|+.++.....+...+..++..+..++..+..+...|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655444322 2223333333333333333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 296 TMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 296 aLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
.+.+.+.........+...+.+|..+...
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333444445555555444433
No 82
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.71 E-value=13 Score=41.49 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 234 IWANRQSAARSKERK-MRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 234 il~NReSA~RSReRK-kqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
...+|..+.+.+..+ ...+.+|+.++..|+.++..|..++..+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333 3455666666666666666666555544
No 83
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.63 E-value=3.2 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 263 QTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 263 q~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+.+...|......|..++..|..||..|+.++..|...
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555666666666666655543
No 84
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.29 E-value=17 Score=35.22 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTN----GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~----~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
+.|...||.-+..|+.+...++.++..+..... ....+.+.|..+-..+.......+.-+..|..||.+||...++
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888777744322 2333444555555555555555666677888888888876654
Q ss_pred C
Q 014327 325 A 325 (426)
Q Consensus 325 ~ 325 (426)
.
T Consensus 215 ~ 215 (221)
T PF05700_consen 215 L 215 (221)
T ss_pred H
Confidence 3
No 85
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=83.14 E-value=1.8 Score=40.68 Aligned_cols=53 Identities=23% Similarity=0.384 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALn 308 (426)
|+++|.|+..-=..|.-|..+| .+...|..++..||.++..|.+++.+++.+.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888888888888888777 4466788888888888888888876666554
No 86
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.71 E-value=26 Score=40.01 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=42.7
Q ss_pred HhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHhH
Q 014327 211 SKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEA-------TSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 211 ~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~EN-------s~Ls~ql~~Lqrq~~~L 283 (426)
.|++--..++.++. .|.|..|-.+.| ++--++|-..-+.+|-..++.|+.+. ..++.+-+-|-.++..|
T Consensus 27 ~~E~~~~~~i~~l~-~elk~~~~~~~~---~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dysel 102 (717)
T PF09730_consen 27 SKEAYLQQRILELE-NELKQLRQELSN---VQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSEL 102 (717)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 35555556667776 467777666555 33333333333333333333333333 33333333444566666
Q ss_pred HHHHHHHHHHHHHHHH
Q 014327 284 TAENSELKLRLQTMEQ 299 (426)
Q Consensus 284 ~sEN~eLK~rLqaLeQ 299 (426)
+.||-.|...|..|.+
T Consensus 103 EeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 103 EEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655543
No 87
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.58 E-value=0.059 Score=56.39 Aligned_cols=53 Identities=32% Similarity=0.344 Sum_probs=43.8
Q ss_pred cChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAAR---SKERKMRYIAELERKVQTLQ-TEATSLSAQLTLLQR 278 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~R---SReRKkqyieeLE~kVq~Lq-~ENs~Ls~ql~~Lqr 278 (426)
.+.||..|+.+|+.+|.+ +|.||+.+..+|...|+.|+ .++..|..++..|+.
T Consensus 151 ~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 151 PEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred chHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 356899999999999999 99999999999999999998 766665555554433
No 88
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.56 E-value=20 Score=30.39 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHH------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 262 LQTEATSLSAQLTLLQR------DTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 262 Lq~ENs~Ls~ql~~Lqr------q~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
+..+|..|..++..|+. ..+....||..|+.++..+..-. .....+.+..+|..|+-
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 33444555555555543 34556788888888877766433 33456777777777764
No 89
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.54 E-value=27 Score=29.06 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
..++.+...+..+..+...++.+-..+...+..-..|...++..|-.|+.... .+.+...+||.+||....
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777778888888888888888888888888886644 445666789999987653
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.48 E-value=55 Score=32.53 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 014327 310 ALKEEIQHLKV 320 (426)
Q Consensus 310 aLk~EVqrLRv 320 (426)
+|..||...|.
T Consensus 294 ~Ld~EIatYR~ 304 (312)
T PF00038_consen 294 ALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34445544443
No 91
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.17 E-value=48 Score=33.10 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
++..|++.++.|+..|..+++.
T Consensus 139 e~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 92
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.05 E-value=0.23 Score=52.02 Aligned_cols=44 Identities=30% Similarity=0.489 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLS 270 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls 270 (426)
|.+|.+-+.+||.+|-++|.||+.++..|+.+...+..++..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 45666678899999999999999999999999999988888877
No 93
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=81.98 E-value=35 Score=34.31 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARSKERKMRYIA-ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDAL 311 (426)
Q Consensus 233 Ril~NReSA~RSReRKkqyie-eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaL 311 (426)
|.|..++=-.++..|-+...- +|.....+-.--...|..++..|++...+..--..-||.+|..|.+.++-+.-|...|
T Consensus 19 ~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l 98 (277)
T PF15030_consen 19 QQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL 98 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555444322 3333332222222334444555555544444444557777777777777776666666
Q ss_pred HHHHHH
Q 014327 312 KEEIQH 317 (426)
Q Consensus 312 k~EVqr 317 (426)
-.|+.|
T Consensus 99 lqel~R 104 (277)
T PF15030_consen 99 LQELHR 104 (277)
T ss_pred HHHHHH
Confidence 555443
No 94
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.97 E-value=13 Score=32.20 Aligned_cols=49 Identities=33% Similarity=0.418 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSL--SAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~L--s~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.++.+|..++++...| ...+..|+-.+..+.-+-+.+..+++.+..++.
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555555555555 555566666666666666666666666665543
No 95
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.87 E-value=27 Score=31.19 Aligned_cols=38 Identities=34% Similarity=0.411 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 290 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eL 290 (426)
..||..+..|+.++..|..+-..+..++..|+.+|.++
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444
No 96
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.80 E-value=24 Score=41.57 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 241 AARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
|...|+|++ .+|+.+++.+...+..-+..+..-.+....|..|..+|+..+...++++.-..-..+.|+.|+..|+.
T Consensus 781 ~~~~re~rl---kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~ 857 (1174)
T KOG0933|consen 781 AKANRERRL---KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA 857 (1174)
T ss_pred hhhhhHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 36666666666666666666666666666777777777776666666665555555555555555544
Q ss_pred h
Q 014327 321 L 321 (426)
Q Consensus 321 a 321 (426)
.
T Consensus 858 k 858 (1174)
T KOG0933|consen 858 K 858 (1174)
T ss_pred H
Confidence 3
No 97
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.78 E-value=43 Score=37.20 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+.|+..++.+.+.+......|..++..-..++..|..+|.+|+..|
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555554443
No 98
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.63 E-value=18 Score=41.45 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDAL-NDALKEEIQHLKVLT 322 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdAL-nEaLk~EVqrLRvaa 322 (426)
..-|..|..+++.++.||..|+.++-.+.++.. +.++-+++-.+-.......++-.+- ...|.+|++|||..+
T Consensus 133 e~~~~~l~~~l~~~eken~~Lkye~~~~~kele-ir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 133 EAEIEDLMARLESTEKENSSLKYELHVLSKELE-IRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666555555432 2223333333333333333322222 356888999998764
No 99
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.56 E-value=53 Score=32.08 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+|+.++..|..|...|...+..+.+....+..+..+|+.++..++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555544
No 100
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=81.38 E-value=18 Score=33.05 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
+.....+.+.++.+..+..+|+.|......-..+...|+..+......+.-++..++.|+.|...||.=++.
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 334444555666667777777777666666666667777777777777888888889999999988876554
No 101
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=81.36 E-value=52 Score=31.56 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+.-+..+..++..++.+...|.-+...|...+..|..|..+|..+....-..++
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444445555555555555555555544443333
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.01 E-value=37 Score=37.59 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 239 QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 239 eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+.|.+.+..-..-+.+++..+..+++|...+...+..+..+...|..||..|...|..+..++
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444445556667777778888888888888888888888888888888777766543
No 103
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=80.40 E-value=9.3 Score=33.79 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHL 303 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qL 303 (426)
.++...|..|+.....|.+++..|.+....|..||..|+.+...|+..+-.
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 378889999999999999999999999999999999999998888766543
No 104
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.24 E-value=45 Score=31.98 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTA 285 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~s 285 (426)
..+++.+++-+.-..+-..-+..+..++.++..|+-|+..|..++..+.++...|..
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666677777777777777777777777766666653
No 105
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.00 E-value=6.7 Score=38.99 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 245 KERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
|.|.++.+.|||.++..+..++..|..++..|+.++
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666678888888877777777776666655543
No 106
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.41 E-value=47 Score=38.75 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=39.0
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 224 ALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 224 a~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+..|-.++|-.++-+.+.+---++-..-++++|.+....+.....|...++.|......|...+..+..++
T Consensus 384 ~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQl 454 (980)
T KOG0980|consen 384 NREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQL 454 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555556666666666666666666555555554444444444443333
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.32 E-value=22 Score=36.41 Aligned_cols=47 Identities=30% Similarity=0.479 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+.+++.+++.|+.|...|..++..|..+...|..|...|+.++..+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555444
No 108
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=78.96 E-value=43 Score=35.59 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH---HHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE---NSELKLRLQTMEQQVHL 303 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE---N~eLK~rLqaLeQQ~qL 303 (426)
+|..+++.+++|.. . --...|.+|..+...|..+...|+.+...+.+.+..+... -.+|+.++..+..++.-
T Consensus 10 n~~~v~~~l~~R~~---~--~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~ 84 (425)
T PRK05431 10 NPEAVKEALAKRGF---P--LDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA 84 (425)
T ss_pred CHHHHHHHHHhcCC---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 56666666666621 0 0133444555555555555555555554444444332211 11344444444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 014327 304 QDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 304 rdALnEaLk~EVqrLRvaaGq~~ 326 (426)
.+.....+.+++..+-...+-+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 85 LEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 44444455556555555544444
No 109
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.94 E-value=14 Score=40.07 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
.+|+.+++.|..+|..|.+++..|++.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777776666666666655443
No 110
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.88 E-value=56 Score=31.61 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
-+|+.|..-+.....|...+...+.+-..+.....+.+.+..+|+.+..-..+....|...|..|......
T Consensus 116 ~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 116 QLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555555566666677777777777777777778888888888777776677777778888777766543
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.83 E-value=24 Score=40.69 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCC
Q 014327 37 PSSSSFPPLAPGG 49 (426)
Q Consensus 37 ~~~~~~~~~~~~~ 49 (426)
+.+..|||.+|-.
T Consensus 116 s~~qpL~~a~p~~ 128 (1118)
T KOG1029|consen 116 SYSQPLPPAAPRR 128 (1118)
T ss_pred CcCCCCCcccccc
Confidence 4445566665554
No 112
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.64 E-value=13 Score=30.53 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+.|.+||.++..-+.....|...|+..+..+..+....+.|-.++..++
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577888888877777777777777776666665555555555554443
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=78.27 E-value=69 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 245 KERKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.++++..+..|+.++..+..++..++.++..+
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 114
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=78.18 E-value=34 Score=37.88 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
+.+||.++..+......|..++..|..++..|..+...++
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 115
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.14 E-value=42 Score=32.13 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
..|.+||.+|-.|+.+...+..+.....
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKD 158 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333
No 116
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.07 E-value=21 Score=28.10 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
|.+|...|++|......|...+..++.+......|-.....||
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555555555554444444444444443
No 117
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.05 E-value=29 Score=30.64 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
.+|-..-..|++-+..|..+...+.+.+..|..+..++...|.
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444444444333
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.54 E-value=31 Score=34.40 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
++||.++..++.....|..+++.|......|..|-..|+.++..|+-.
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 333334444444444444444444444444444444444444444433
No 119
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=77.43 E-value=7.6 Score=40.79 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 238 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-++|+..|+|-++.-...|..+.++..|..-|++++..+......|..|+..||.-+..++.-.+
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 35677888899998889999999999999999999999999999999999999988877775444
No 120
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.32 E-value=31 Score=33.91 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 262 LQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 262 Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
|+.|+..+.+.+..|+.+......+...+.....+|..|..-..-..+.|.+|...|+...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444455555444444444555556655555443
No 121
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.13 E-value=44 Score=28.25 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 014327 237 NRQSAARSKERK------MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTA---ENSELKLRLQTMEQQVHLQDAL 307 (426)
Q Consensus 237 NReSA~RSReRK------kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~s---EN~eLK~rLqaLeQQ~qLrdAL 307 (426)
|.+..+.+-.++ ...|.+|..+...+..+...|.++...+.+.+..+.. +-.+|+.++..+..+..-.+..
T Consensus 10 n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 10 NPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444 3556667777777777777887777777777776665 4567888888888887777777
Q ss_pred HHHHHHHHHHHHh
Q 014327 308 NDALKEEIQHLKV 320 (426)
Q Consensus 308 nEaLk~EVqrLRv 320 (426)
...+..++..+-.
T Consensus 90 ~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 90 LKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665543
No 122
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.10 E-value=10 Score=28.33 Aligned_cols=42 Identities=38% Similarity=0.506 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
.||+....|......|..+...|.+++..|..|...|+..++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366777777777777777777777777777777777776653
No 123
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.94 E-value=52 Score=31.25 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSE 289 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~e 289 (426)
.+|+.++..|+.++..|..++..+......+...+.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544444443
No 124
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=76.83 E-value=30 Score=38.93 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDA 306 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdA 306 (426)
-.+|+.+|..|+.++..|..+|..+.+++...+.+-.....++........|.++
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~A 135 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEA 135 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777777666665555555554555444444444433
No 125
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.80 E-value=38 Score=39.97 Aligned_cols=75 Identities=27% Similarity=0.300 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDT--NGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~--~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
+++|+.--..|..+-.-|..+|.-++.+. ..+++|+-.|+.++..|+-+.-......+.|..|+..|-++..++.
T Consensus 266 veelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 266 VEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555666666666655 6677888889999999998888888888999999999988876655
No 126
>PRK02119 hypothetical protein; Provisional
Probab=76.71 E-value=21 Score=29.10 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+..||.++..|+...+-...-+..|.........+...|+.+|
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777776666665555555444443333333333333
No 127
>PLN02678 seryl-tRNA synthetase
Probab=76.34 E-value=45 Score=36.01 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH---HHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLT---AENSELKLRLQTMEQQVHL 303 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~---sEN~eLK~rLqaLeQQ~qL 303 (426)
++..+++.+++|-.. .+ -...|.+|..+...|..+...|.++...+.+++..+. .+..+|+.++..|..+...
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~ 89 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITE 89 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Confidence 556666666666421 00 1344444444444444444444444444444333211 1223444455555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 014327 304 QDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 304 rdALnEaLk~EVqrLRvaaGq~~ 326 (426)
.+.....+..++..+-....-++
T Consensus 90 le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 90 KEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 55555566666666655555544
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.92 E-value=55 Score=31.13 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhccCC
Q 014327 306 ALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 306 ALnEaLk~EVqrLRvaaGq~~ 326 (426)
...+.++.++..++.++....
T Consensus 135 ~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655544
No 129
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.84 E-value=16 Score=28.63 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKE 313 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~ 313 (426)
|.+||.+|..+.....+ +..||.+|+..++.+.+-++-.=.++|....
T Consensus 2 i~elEn~~~~~~~~i~t--------------vk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 2 IDELENELPRIESSINT--------------VKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666555544333 3446666666666666655444345554443
No 130
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.73 E-value=1.4e+02 Score=33.53 Aligned_cols=66 Identities=32% Similarity=0.348 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHhHHhHHH
Q 014327 230 RAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEA------------------------TSLSAQLTLLQRDTNGLTA 285 (426)
Q Consensus 230 R~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~EN------------------------s~Ls~ql~~Lqrq~~~L~s 285 (426)
++.-.++|.+.--+--..+...|.+||.++..++.+. ..|+.+|..|+..+..|..
T Consensus 102 qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 102 QLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555444444466777888888777776653 3444555555555555555
Q ss_pred HHHHHHHHHH
Q 014327 286 ENSELKLRLQ 295 (426)
Q Consensus 286 EN~eLK~rLq 295 (426)
+|.+|+..|+
T Consensus 182 e~~elt~~lq 191 (617)
T PF15070_consen 182 ENMELTSALQ 191 (617)
T ss_pred hhhHhhHHHH
Confidence 5555554443
No 131
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.69 E-value=2.9 Score=46.81 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=5.6
Q ss_pred CCCCCCCCCCC
Q 014327 331 PMMNYPSFGAG 341 (426)
Q Consensus 331 ~mmN~~Sfg~~ 341 (426)
+-.|+.||-++
T Consensus 42 ~~~~~~~~~~~ 52 (1179)
T KOG3648|consen 42 PGANFVSFVGQ 52 (1179)
T ss_pred CCcchhhhccc
Confidence 33455666444
No 132
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=75.47 E-value=50 Score=34.29 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=35.9
Q ss_pred cCCCCCCchhHhhhc--cHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 201 SASDEAPSADSKKAM--SAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQ 263 (426)
Q Consensus 201 ~~~~~~~~~~~kk~~--~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq 263 (426)
|.+++-.-..||.+. -...|-.....-.++.+++|++|...-..=.||+..+.-=+..++.|.
T Consensus 92 FSne~qdl~~Mk~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr 156 (323)
T PF08537_consen 92 FSNEEQDLTRMKNACTNINSRLPNRERKSGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLR 156 (323)
T ss_pred hCccHHHHHHHHHHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 444444445566665 333344433333456668999999887777777554433344555554
No 133
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.34 E-value=23 Score=32.23 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
..+++|+.+|..|+.++..+..+|..|+..+..|..+...+...|..+...+.
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888777777777777777777777777766666554443
No 134
>PRK04406 hypothetical protein; Provisional
Probab=75.22 E-value=24 Score=28.93 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
+..||.++..|+...+-+..-+..|.........+...|+.+|.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666666555555554444443333333443333
No 135
>PF15058 Speriolin_N: Speriolin N terminus
Probab=75.09 E-value=4.3 Score=39.11 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=31.5
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 274 TLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 274 ~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
+-+..++..|+.||.+||+.+.-|+....++.+|-|+...-..|.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r~ 52 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQRQ 52 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 344556666777888888887777777777777777766665554
No 136
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.03 E-value=65 Score=35.86 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
+|++-...++.|+.+...|+.....+.+=+..+......+......|+.++...
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 555555555556666655555555555444444444433433333333333333
No 137
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=74.94 E-value=20 Score=35.86 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..|.+..++....++....+-+.....+...+..|+.||..|+.++..|+.+
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555555555666667777777777777766655543
No 138
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.79 E-value=98 Score=33.37 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
|+.-|+.+.+..-+..-+--+..+.++|..++.|+.||+.|..+....
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455454443332222222223446688888999999998887665544
No 139
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.39 E-value=28 Score=35.83 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTN 281 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~ 281 (426)
++.|..|++.|+.||..|+.+...|...+.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~ 191 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETD 191 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 444555555555555555555444443333
No 140
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=74.37 E-value=40 Score=34.44 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 243 RSKERKMRYIAELER-------KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEI 315 (426)
Q Consensus 243 RSReRKkqyieeLE~-------kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EV 315 (426)
+-|.-|.=.|+.||. +|..-..+.+.|..++..|...+..|+.-+..|...|+..+.++...++.....++.|
T Consensus 32 KE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqi 111 (307)
T PF10481_consen 32 KERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQI 111 (307)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334444445566654 4444445555566666666666666666666666666666666666666666666665
Q ss_pred HHHH
Q 014327 316 QHLK 319 (426)
Q Consensus 316 qrLR 319 (426)
.+|-
T Consensus 112 e~Le 115 (307)
T PF10481_consen 112 EKLE 115 (307)
T ss_pred HHHH
Confidence 5443
No 141
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=74.31 E-value=42 Score=37.78 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 014327 251 YIAELERKV 259 (426)
Q Consensus 251 yieeLE~kV 259 (426)
+|..+|+.+
T Consensus 562 ~~~~~~~~~ 570 (657)
T PTZ00186 562 QLTTAERQL 570 (657)
T ss_pred HHHHHHHHh
Confidence 333333333
No 142
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=74.26 E-value=88 Score=30.32 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=52.2
Q ss_pred HHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 218 AKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 218 ~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.....|+..|.+|++ +.+-.....|.-..-......|...+...+..-.....+-...+.+...|..|...+..+|..|
T Consensus 95 ~Qt~~LA~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~l 173 (192)
T PF11180_consen 95 QQTARLADVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQL 173 (192)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556655666664 3333333333333444445555555555555555555566666777888888888888888888
Q ss_pred HHHHHHHH
Q 014327 298 EQQVHLQD 305 (426)
Q Consensus 298 eQQ~qLrd 305 (426)
..++...+
T Consensus 174 Q~qv~~Lq 181 (192)
T PF11180_consen 174 QRQVRQLQ 181 (192)
T ss_pred HHHHHHHH
Confidence 87776443
No 143
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=74.15 E-value=25 Score=36.16 Aligned_cols=46 Identities=43% Similarity=0.486 Sum_probs=32.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQ---TLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 253 eeLE~kVq---~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
++|.+|.. ..+.|++.|..++..+++.+..+..||-+|...|....
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444433 34567788888888888888888888888888875543
No 144
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=74.12 E-value=17 Score=40.52 Aligned_cols=76 Identities=22% Similarity=0.261 Sum_probs=55.2
Q ss_pred hhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 212 KKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 212 kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
-+-+.+=-|....++|.|-+--|++| +|-.||..|..|+.-|+.++...++...-|+..+++|.
T Consensus 300 GrEVeNLilENsqLLetKNALNiVKN----------------DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elE 363 (832)
T KOG2077|consen 300 GREVENLILENSQLLETKNALNIVKN----------------DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELE 363 (832)
T ss_pred hHHHHHHHHhhHHHHhhhhHHHHHHH----------------HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677889999999988 78888888888888888888777776666666677776
Q ss_pred HHHHHHHHHHHH
Q 014327 292 LRLQTMEQQVHL 303 (426)
Q Consensus 292 ~rLqaLeQQ~qL 303 (426)
++|..+.+++..
T Consensus 364 EElk~~k~ea~~ 375 (832)
T KOG2077|consen 364 EELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 145
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.73 E-value=62 Score=38.07 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 232 KRIWANRQSAARSKERKMRYIAELE 256 (426)
Q Consensus 232 KRil~NReSA~RSReRKkqyieeLE 256 (426)
|++.+-|..|+..-+.|.+|..+|-
T Consensus 283 rel~raR~e~keaqe~ke~~k~ema 307 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMA 307 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888888877663
No 146
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=73.56 E-value=4.8 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCcccCCCCCCCcc
Q 014327 9 HGGIPPPSGRYSSFSPPGNNNFN 31 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (426)
.||++-++---+.--|.|+-+||
T Consensus 1426 ~gg~s~~~sf~~~~~~agS~S~~ 1448 (2131)
T KOG4369|consen 1426 FGGISGTRSFLQGPAPAGSPSFN 1448 (2131)
T ss_pred cCCCccccccccCCCcCCCcccc
Confidence 45555544322222344443443
No 147
>smart00338 BRLZ basic region leucin zipper.
Probab=73.45 E-value=33 Score=26.59 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=11.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 274 TLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 274 ~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
..|...+..|+.+|..|+.++..|..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 148
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=73.37 E-value=24 Score=30.55 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+..+..+...+..++..++.+...+...|.+|-.++..|..+..
T Consensus 5 ~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 5 ILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555555555555555555555554433
No 149
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=73.34 E-value=33 Score=35.93 Aligned_cols=50 Identities=26% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
.|-+..+..||.-|..+..||..|..++..+.+++.+.+.|+..|..+|.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 45566677888888888899999999999999988888888877766653
No 150
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.34 E-value=44 Score=32.92 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 280 TNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 280 ~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
...+..||.+|+.++..|+.+.. ..+.+++|..+||.+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 33455555555555555544332 22344556666665543
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.03 E-value=26 Score=32.13 Aligned_cols=49 Identities=31% Similarity=0.462 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQL--TLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql--~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
.+.+|+..+..|+.|...|...+ ..|...+..|..|+..|..+|..|..
T Consensus 87 el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666666666554 44567777777888888888777765
No 152
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.99 E-value=67 Score=28.40 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 236 ANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 236 ~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
.-.+...-|+..=...-++|+..++.|+.++..+...+..|+..+..+...
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555555555555555555555444433
No 153
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.95 E-value=45 Score=28.80 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLL--QRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~L--qrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.++.|+.++.......+.+..++..| ..+...|..+..+++-++..|..++.
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555555444445555555444 44444444444444444444444433
No 154
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.67 E-value=37 Score=42.78 Aligned_cols=86 Identities=28% Similarity=0.351 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALK 312 (426)
Q Consensus 233 Ril~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk 312 (426)
-+.+-.+.++++++-=...+...|+++..|++|+..|+..+..+.+....++.|..++..++..+..+.-..-.....|.
T Consensus 1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE 1722 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLE 1722 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 34557789999999999999999999999999999999999999999999999999999888876654333333333334
Q ss_pred HHHHHH
Q 014327 313 EEIQHL 318 (426)
Q Consensus 313 ~EVqrL 318 (426)
.+|..|
T Consensus 1723 ~~i~~l 1728 (1930)
T KOG0161|consen 1723 AEIAQL 1728 (1930)
T ss_pred HHHHHH
Confidence 444333
No 155
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=72.67 E-value=5.2 Score=34.65 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 253 AELERKVQTLQTEATSLSAQL-TLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql-~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
.++|..+..++.|...|++.| .....-...-..+...+..++..|+.++.-.+.+.+.|..++..|+.....+.
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455556666666666666543 22111112222234456666667777777677777888888888888776655
No 156
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.27 E-value=1.2e+02 Score=31.14 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
.|+..+..|+.+...|...++.+..-.-.|......|+.++..
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444444444444444444433333
No 157
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.94 E-value=40 Score=34.11 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
-|.+|+..+..++.+...|-.++..+......+..++.+++..+..++.+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555444444
No 158
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.89 E-value=1.2e+02 Score=33.61 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 284 TAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 284 ~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
++.-+-++.+|..|..++.--.......++||+.||.+
T Consensus 479 ~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 479 ETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344556666666666542222233446788888854
No 159
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=71.71 E-value=6.1 Score=46.73 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=7.5
Q ss_pred chhhhhhccccc
Q 014327 119 EEDLLSMYLDMD 130 (426)
Q Consensus 119 ~~dlfs~y~d~~ 130 (426)
-|.|+.++.+..
T Consensus 1210 ~d~lv~vivnp~ 1221 (1517)
T KOG1883|consen 1210 HDRLVAVIVNPQ 1221 (1517)
T ss_pred HHHHHHHHcCcc
Confidence 456777776654
No 160
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.71 E-value=28 Score=35.08 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhc
Q 014327 311 LKEEIQHLKVLTG 323 (426)
Q Consensus 311 Lk~EVqrLRvaaG 323 (426)
+++|..+||.+.+
T Consensus 96 l~~EN~rLr~LL~ 108 (283)
T TIGR00219 96 LKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHhc
Confidence 4444455554433
No 161
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=71.69 E-value=1.3e+02 Score=33.91 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEE 314 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~E 314 (426)
|+.+.+|+..+-.|..+|..|...+..-+.....|.....+|+.++..+..++..++.....|..+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 577899999999999999999988888888888888888888888888887777776544444443
No 162
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.47 E-value=57 Score=34.71 Aligned_cols=67 Identities=28% Similarity=0.439 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQR---DTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqr---q~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
|..+++.|+.+.+.+++++..+.. +...|..+.++|+.++..++.++. .+.+.+.+.+-.|.-....
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELD---ELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCc
Confidence 344555555555666665554322 344677788888888888877665 4445555566666655544
No 163
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.46 E-value=64 Score=30.67 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=10.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
++..|..+...|..+..+|+.+++.++
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333433333333
No 164
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.14 E-value=23 Score=36.36 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEE 314 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~E 314 (426)
+.+.++...+.+...+..++..|+.++.....+...|+..+..++..+.....|...|..|
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 3344444444444555555555555555555666666666655555544444444444333
No 165
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.99 E-value=28 Score=31.97 Aligned_cols=51 Identities=29% Similarity=0.468 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDT--NGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~--~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
|.+|..++..|..++..|..++..|.... ..|..+..+|+.++..|+.++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777775543 3444555555555555554443
No 166
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=70.69 E-value=91 Score=32.83 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHhHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLL--------------QRDTNGLTAENSELKLRL 294 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L--------------qrq~~~L~sEN~eLK~rL 294 (426)
.++|.+.-|-+--+.-|+- +++-....+.|+..|..|.+++.-. ..-...+..||..|+.+|
T Consensus 75 ~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566666666655555543 3333344556666666666665443 444556778888999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014327 295 QTMEQQVHLQDALNDAL 311 (426)
Q Consensus 295 qaLeQQ~qLrdALnEaL 311 (426)
+++.+++..++-....|
T Consensus 151 ~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 151 DALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHhHhHHHHHHH
Confidence 99988886555433333
No 167
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.67 E-value=19 Score=31.51 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
-..|-+|+.....|+.++.....++..|.+||..|-+.|+.|-.
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 34566777788889999999999999999999999988877753
No 168
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.50 E-value=52 Score=38.09 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=6.2
Q ss_pred chhhhhhcc-ccc
Q 014327 119 EEDLLSMYL-DMD 130 (426)
Q Consensus 119 ~~dlfs~y~-d~~ 130 (426)
||=.++||| ||-
T Consensus 249 dEfilam~liema 261 (1118)
T KOG1029|consen 249 DEFILAMHLIEMA 261 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 344566664 443
No 169
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.28 E-value=35 Score=34.91 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
+.|-|.+++.=++|+..|+.||.-++.+.
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777777776655
No 170
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.14 E-value=52 Score=31.31 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD 305 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd 305 (426)
.+++=..+...|...|+-|+.++......+..|..++..|...+..+..++..++
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777777777777777777777777777766666655554
No 171
>PLN02320 seryl-tRNA synthetase
Probab=70.09 E-value=1e+02 Score=33.83 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HhHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT---------NGLTAENSELKLRLQTM 297 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~---------~~L~sEN~eLK~rLqaL 297 (426)
++..+++.+++|-... ....|.+|..+...+..+...|+++...+.+++ ..|..|-++|+.+|..|
T Consensus 75 n~~~v~~~l~~R~~~~-----~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~l 149 (502)
T PLN02320 75 NKEAVAINIRNRNSNA-----NLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTL 149 (502)
T ss_pred CHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555555555553210 034444455444444444444444444443333 33444555555555555
Q ss_pred HHHH
Q 014327 298 EQQV 301 (426)
Q Consensus 298 eQQ~ 301 (426)
+.++
T Consensus 150 e~~~ 153 (502)
T PLN02320 150 EEDL 153 (502)
T ss_pred HHHH
Confidence 5443
No 172
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.90 E-value=36 Score=34.82 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 270 SAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 270 s~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
+.++..+...+..|+.||..++.+..
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 173
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=69.86 E-value=21 Score=30.41 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
|+-|-..-+.+|..|+.++..|..++..|+..
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 174
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.41 E-value=87 Score=31.80 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=4.0
Q ss_pred cCccCCC
Q 014327 87 HSEILTL 93 (426)
Q Consensus 87 ~Se~~~l 93 (426)
.|.+|+|
T Consensus 54 ~s~sftl 60 (269)
T PF05278_consen 54 ESQSFTL 60 (269)
T ss_pred cCccccH
Confidence 4555654
No 175
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.36 E-value=19 Score=36.24 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTN----GLTAENSELKLRL 294 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~----~L~sEN~eLK~rL 294 (426)
.+..|..||..|+.++..+..+.. .|..||.+|+.-|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556667777766655532222 2566666666543
No 176
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=68.82 E-value=45 Score=37.34 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..+.+||.|-+.|+.|..++...+..+++.+..-..|...||..+++-+.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 457799999999999999999999999998888888888888877665543
No 177
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.65 E-value=74 Score=29.38 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 014327 267 TSLSAQLT 274 (426)
Q Consensus 267 s~Ls~ql~ 274 (426)
.++..++.
T Consensus 105 ~~~~~~l~ 112 (191)
T PF04156_consen 105 QELESELE 112 (191)
T ss_pred HHHHHHHH
Confidence 33333333
No 178
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.63 E-value=34 Score=39.51 Aligned_cols=72 Identities=25% Similarity=0.282 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMP 327 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~ 327 (426)
+.|.++|..-+..+......+-.++..+.+....|..||.+|+.+++.+. .....|++++.-||...|-+..
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~-------s~hsql~~q~~~Lk~qLg~~~~ 720 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI-------SEHSQLKDQLDLLKNQLGIISS 720 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccccc
Confidence 45777787788888888888888888888888888888888877765553 3334566777777777775553
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.22 E-value=31 Score=34.29 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
+.+|..++..|+.|+..|+.+++.++.++..|....+++-..|..
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888777777666666666655544
No 180
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.00 E-value=53 Score=33.93 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+.-+..++..|+.+|..|+..-..+
T Consensus 43 l~~ek~~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 43 LETEKARCKHLQEENRALREASVRI 67 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666666666665544333
No 181
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=67.95 E-value=27 Score=35.38 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.||=.||.++++...|...|..++..|+..+..+.....+.|..|+-|+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455556666666666666666666666655555555555555444443
No 182
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.75 E-value=33 Score=33.74 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+++.++.++..|..+...+.++...|..|+..|+.++
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555555555555444443
No 183
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.72 E-value=79 Score=35.36 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQ---RDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lq---rq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
...|+.||-.|.+++..|+ -++.+|.-|++.|...+.-|..++
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666653 345566666766666666555543
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=67.68 E-value=73 Score=36.48 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSA---QLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~---ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.+-+.+||..-..|+..+..|+. ++..+..++..|..|...|+.+++.+
T Consensus 96 l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 96 LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566655555555555552 23333444444444444444444443
No 185
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.30 E-value=1.1e+02 Score=36.48 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.+++|+..+-.|+.||..|..+|+.|
T Consensus 531 k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 531 KLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444
No 186
>PRK02793 phi X174 lysis protein; Provisional
Probab=67.18 E-value=45 Score=27.08 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
.++|.++..|+...+-...-+..|....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v 31 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTV 31 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777666655555555555444433
No 187
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=66.94 E-value=37 Score=33.47 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
...+.+|..+.+.|+.|+..|+.++..+ ..+..||.+|+.-
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~l 108 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL----EQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2455666666653
No 188
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=66.71 E-value=1.9 Score=49.37 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=6.2
Q ss_pred hhhhhcccccc
Q 014327 121 DLLSMYLDMDK 131 (426)
Q Consensus 121 dlfs~y~d~~~ 131 (426)
.||--|-|+.+
T Consensus 45 rli~h~r~~~~ 55 (799)
T PF09606_consen 45 RLILHIRDMSK 55 (799)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 45555666653
No 189
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=66.55 E-value=37 Score=27.16 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
||.+|..|+...+-+..-+..|.........+...|+.+|..|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677666666555555555555444444444444444444333
No 190
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=66.54 E-value=72 Score=36.12 Aligned_cols=67 Identities=28% Similarity=0.336 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSA---QLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 233 Ril~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~---ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
-+|.-++.|+..|-|-++.+.++.+ ..|.+.-.-|.. ..+.|..+...|++|..+||.++.+|+.+.
T Consensus 128 svLteqVeaQgEKIrDLE~cie~kr--~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCIEEKR--NKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH--hhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 4788888899888887776554432 222222122222 236778888899999999999998888543
No 191
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=66.52 E-value=23 Score=36.96 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ-VHLQDAL 307 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ-~qLrdAL 307 (426)
..|-..|.+|..+...+..+|..-.+++..+..|...+|.-+..|..+ ..++++|
T Consensus 143 snl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 143 NNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred cceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999999999999999999998888888877777644 3344443
No 192
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.33 E-value=89 Score=31.66 Aligned_cols=51 Identities=12% Similarity=0.347 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ 304 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLr 304 (426)
.++.+|+.|......+..++..++.++..+..|...|+.+|..++....-+
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666677777777777777777777777777777777665533
No 193
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.22 E-value=1.8e+02 Score=31.01 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----HHhHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRD----TNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq----~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+|..+++.|+.+.+.+++++..+... ...|..+-++|+.++..++.++
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555443211 2344444555555555554443
No 194
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.13 E-value=1.3e+02 Score=28.93 Aligned_cols=84 Identities=30% Similarity=0.342 Sum_probs=39.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhHHhHHHHHHHHHHHH-------HHH
Q 014327 240 SAARSKERKM-RYIAELERKVQTLQTEATSLSAQLT--------------LLQRDTNGLTAENSELKLRL-------QTM 297 (426)
Q Consensus 240 SA~RSReRKk-qyieeLE~kVq~Lq~ENs~Ls~ql~--------------~Lqrq~~~L~sEN~eLK~rL-------qaL 297 (426)
||+.-+-+.. .-|.+|..+++.|..||..|..-.. .|-+-+.....|.+.|+.++ ..+
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444332 3456666666666666666552211 11122222233333333333 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 298 EQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 298 eQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
+..+.-.+.....+..++.+|+....
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445556666666666543
No 195
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=66.11 E-value=36 Score=34.82 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=19.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQQVH-LQDALNDAL 311 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q-LrdALnEaL 311 (426)
...|.-++..|+.+|.+||.++..|+.+.+ +++++.+..
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666655544 344444443
No 196
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=65.78 E-value=1.5e+02 Score=29.49 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+..+..|+..++.++..|+.++..|...|..|...|..++..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 334445555555555555555555555555555555555443
No 197
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=65.68 E-value=1.7e+02 Score=34.73 Aligned_cols=70 Identities=26% Similarity=0.280 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSA-----QLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~-----ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.-|-|.||+--.-++++..+|-++.|.+-..|......|+. +-..+.+-...++.|-++|+..+......
T Consensus 1030 r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1030 RVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456788888888888888888888888887777766653 33444455556777888888777655543
No 198
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.27 E-value=62 Score=29.46 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEE 314 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~E 314 (426)
...|+.........+..|+.++..++.....-...|+.|+..+.......+...+.
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444455555555555555556666666666666665444444443333
No 199
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.95 E-value=1.3e+02 Score=30.62 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 014327 235 WANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTA 285 (426)
Q Consensus 235 l~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~s 285 (426)
++|++.---+|.-.-+.+..||..+..+..-...|.+-+..|.+.+..|+.
T Consensus 76 e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 76 ERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 334444344444444445555555555555555555555555554444443
No 200
>PF15294 Leu_zip: Leucine zipper
Probab=64.75 E-value=25 Score=35.73 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
|...+..|+.||..|+.++..++..+.....|+..|+..|..++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444445444444444443
No 201
>PRK10698 phage shock protein PspA; Provisional
Probab=64.65 E-value=83 Score=30.62 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDAL 307 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdAL 307 (426)
.+..|+..+...+.....|...+..|+..+..+......|+.|...-+.+..+..++
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666777777777677777777777766666666665543
No 202
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.54 E-value=1.5e+02 Score=33.33 Aligned_cols=38 Identities=21% Similarity=0.376 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 282 GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.+..+.+.++.++..+...++.++.+...|..++.+|.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444555666666666666666666677777665443
No 203
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.51 E-value=1.4e+02 Score=31.95 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
..+-.......+.+|+.++..+......+..+...++.++..|..++.++..+|..+..++.
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 33333334444555555555555555445555555555555555555555555555444433
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.33 E-value=1.1e+02 Score=30.13 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..-+.+|++....+..+.......+..+..|-..||..+..+...
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433
No 205
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=64.15 E-value=1.2e+02 Score=35.03 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 278 RDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 278 rq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
++...|..|...+|++|.++.....-..-.++.|..|+.+|+.
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445566666666666666654433333446677777777774
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.13 E-value=52 Score=32.70 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
..||+.+..-......|..+|..|++++..|.-++.++..+|+.|.++..
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555444433444556666666666666666666666666666655444
No 207
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.11 E-value=13 Score=29.55 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 266 ATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 266 Ns~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
...|+.++..|..++..|+.||..||.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555554
No 208
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.96 E-value=86 Score=33.30 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH----HHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE----NSELKLRLQTMEQQVH 302 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE----N~eLK~rLqaLeQQ~q 302 (426)
+|..+++.+++|-.. ...-...|.+|..+...+..+...|+++...+.+++..+... ..+|+.++..+..+..
T Consensus 10 n~~~v~~~l~~R~~~---~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~ 86 (418)
T TIGR00414 10 NPDLVKESLKARGLS---VDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELT 86 (418)
T ss_pred CHHHHHHHHHhcCCC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Confidence 455555555555311 011245667777788888888888888888877777664322 3467777778877777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Q 014327 303 LQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 303 LrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
-.+.....+.+++..+-.....+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 87 ELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 776767777777766655555444
No 209
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=63.70 E-value=22 Score=32.30 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
...|.-++.|+.+...-..++..|+.....+...|..|..
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444444444444444444444443
No 210
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.62 E-value=56 Score=36.56 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ 304 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLr 304 (426)
-+.+|...|..|..+...+..++..+...+..+..|..+.+.....++.++.++
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444445555555554444444444444
No 211
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=63.42 E-value=1.3e+02 Score=28.09 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHH
Q 014327 262 LQTEATSLSAQLTLLQRDTNGLT 284 (426)
Q Consensus 262 Lq~ENs~Ls~ql~~Lqrq~~~L~ 284 (426)
+..++..|..++..|+..+..|.
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333
No 212
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.28 E-value=1.9e+02 Score=30.04 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=23.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 279 DTNGLTAENSELKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 279 q~~~L~sEN~eLK~rLqaLeQQ~qLrdALn 308 (426)
++..|.+||+.|+.+|..++.+.-+.-.-.
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999998887776544333
No 213
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=63.17 E-value=52 Score=36.27 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..+-..+..++.||.+|..+|..+++.+..+..|+.++...|+++...
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555678899999999999999999999999999998877654
No 214
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.11 E-value=1.9e+02 Score=29.81 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHHHhhhhhcChHHHHHHHHHHHHHHHHHHH
Q 014327 217 AAKLAELALIDPKRAKRIWANRQSAARSKER 247 (426)
Q Consensus 217 ~~~l~ela~~DpKR~KRil~NReSA~RSReR 247 (426)
.+.|+|+. .|-.|=|+.| |+---+|
T Consensus 83 k~~l~evE---ekyrkAMv~n---aQLDNek 107 (302)
T PF09738_consen 83 KDSLAEVE---EKYRKAMVSN---AQLDNEK 107 (302)
T ss_pred HHHHHHHH---HHHHHHHHHH---hhhchHH
Confidence 34566664 6778888888 5554444
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.90 E-value=1.3e+02 Score=32.92 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=3.0
Q ss_pred CCCCCCc
Q 014327 111 GPSLSDE 117 (426)
Q Consensus 111 ~~~~~~~ 117 (426)
|-.|...
T Consensus 137 Gk~Fn~l 143 (493)
T KOG0804|consen 137 GKQFNSL 143 (493)
T ss_pred CCcCCCC
Confidence 4444443
No 216
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.55 E-value=1.7e+02 Score=34.99 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQL-TLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql-~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+|.++...|..|+.....+.+++ ..+..+...++.+...|+.+++.++
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333 3333333333333333444444433
No 217
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.46 E-value=15 Score=42.19 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 235 WANRQSAARSKERKMRYIAELERKVQTLQ 263 (426)
Q Consensus 235 l~NReSA~RSReRKkqyieeLE~kVq~Lq 263 (426)
|+=|.+|-..|.+--+.+.++.=.+-...
T Consensus 777 L~pRL~~ilFKl~fse~vnniKP~i~avt 805 (1102)
T KOG1924|consen 777 LRPRLSAILFKLTFSEQVNNIKPDIVAVT 805 (1102)
T ss_pred cChhHHHHHHHhhHHHHHhhcChHHHHHH
Confidence 45567777777777666666654443333
No 218
>PRK00295 hypothetical protein; Provisional
Probab=62.34 E-value=58 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
||.++..|+...+-+..-+..|.........+...|+.+|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665555555555444444443333333333333333
No 219
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=62.17 E-value=4.7 Score=47.89 Aligned_cols=6 Identities=67% Similarity=1.110 Sum_probs=3.3
Q ss_pred CCCCCC
Q 014327 14 PPSGRY 19 (426)
Q Consensus 14 ~~~~~~ 19 (426)
||+-||
T Consensus 1394 p~~~r~ 1399 (2131)
T KOG4369|consen 1394 PPSQRV 1399 (2131)
T ss_pred Chhhhh
Confidence 455565
No 220
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.96 E-value=1.2e+02 Score=27.12 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~ 274 (426)
++.+...++.....-+.-.+....++.++..+..+...+...+.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~ 72 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELK 72 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 221
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.64 E-value=35 Score=29.57 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=8.0
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 014327 280 TNGLTAENSELKLRLQTME 298 (426)
Q Consensus 280 ~~~L~sEN~eLK~rLqaLe 298 (426)
+..|..+|..|+.++..|.
T Consensus 43 ~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 43 NAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444443
No 222
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=61.43 E-value=88 Score=25.47 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+=...|..|..|-..|+.+.-.+...+..|...+.++...+..+.
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444444445545544444444444
No 223
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.31 E-value=75 Score=24.59 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=11.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+..|...+..|..+|..|+..+..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 224
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=61.17 E-value=1.1e+02 Score=31.25 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~L 276 (426)
++..++.+...+..++..+
T Consensus 204 ~~~~~~~~l~~~~~~l~~~ 222 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVL 222 (423)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333
No 225
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=61.02 E-value=2.1e+02 Score=32.30 Aligned_cols=78 Identities=26% Similarity=0.323 Sum_probs=37.3
Q ss_pred chhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 014327 208 SADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 287 (426)
Q Consensus 208 ~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN 287 (426)
.....|.-+-+++.++.. |..+..|.-+.++.-+|-|++..+ |-..++.....+...|..++-.|..+...|+.|.
T Consensus 594 ksqdRks~srekr~~~sf-dk~kE~Rr~Re~eer~RirE~rer---EqR~~a~~ERee~eRl~~erlrle~qRQrLEREr 669 (940)
T KOG4661|consen 594 KSQDRKSRSREKRRERSF-DKRKEERRRREAEERQRIREERER---EQRRKAAVEREELERLKAERLRLERQRQRLERER 669 (940)
T ss_pred hhhhhHHHHHHhhhhhhH-HhhhhHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667778887764 333333333333333333333322 3333333344444555555555555555555544
Q ss_pred HH
Q 014327 288 SE 289 (426)
Q Consensus 288 ~e 289 (426)
-+
T Consensus 670 mE 671 (940)
T KOG4661|consen 670 ME 671 (940)
T ss_pred HH
Confidence 33
No 226
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=60.87 E-value=72 Score=40.42 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQH 317 (426)
Q Consensus 238 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqr 317 (426)
|..|.|+|.+=..-|.+||..+......+..+..++..++.....|..++.......+.+..++...+.-+.+|..|+..
T Consensus 1599 k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~ee 1678 (1930)
T KOG0161|consen 1599 KSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEE 1678 (1930)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555444445777887777777777777766666666665555555554444444444444434334444444444
Q ss_pred HHh
Q 014327 318 LKV 320 (426)
Q Consensus 318 LRv 320 (426)
|+.
T Consensus 1679 L~~ 1681 (1930)
T KOG0161|consen 1679 LRE 1681 (1930)
T ss_pred HHH
Confidence 443
No 227
>PRK04325 hypothetical protein; Provisional
Probab=60.77 E-value=66 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
..+|.+|..|+...+-+..-+..|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGL 28 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556555554444444433333
No 228
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.68 E-value=23 Score=29.92 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=15.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 243 RSKERKMR----YIAELERKVQTLQTEATSLSAQL 273 (426)
Q Consensus 243 RSReRKkq----yieeLE~kVq~Lq~ENs~Ls~ql 273 (426)
+-|.||.+ .|..|..|+..|..+|..|..++
T Consensus 64 ~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 64 RVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443 44555555555555555555443
No 229
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.58 E-value=1.8e+02 Score=28.76 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.|+.+...++.++..|..+..........|..+..++...+..|......++.....|+.++...+
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666665555556666666667777777777777777767666666666654444
No 230
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.51 E-value=1.4e+02 Score=27.37 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLS 270 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls 270 (426)
+-..+++.--..+-.-|.++..++..++..+.....+...|.
T Consensus 96 ~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~ 137 (218)
T cd07596 96 KEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLK 137 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444555555666666666666655555544443
No 231
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=60.30 E-value=2e+02 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=10.4
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 277 QRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 277 qrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..+....+.+..+++.++..+..+
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~r 236 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGR 236 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433
No 232
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=60.18 E-value=5.8 Score=34.38 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
.||..|...+..|..++..|..++..|...+..+......|+..|
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 578888888888888888888888888777777776666666554
No 233
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.64 E-value=1.9e+02 Score=28.86 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---HHhHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRD---TNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq---~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
++|.-++.|...-+.+...+.++++. ...++.|-..++.+++.|+...+
T Consensus 59 e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q 110 (246)
T KOG4657|consen 59 ELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQ 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444444444433322 23334444444555554444433
No 234
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=59.40 E-value=1.4e+02 Score=28.16 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 242 ARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 242 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
...++.-+..|..|...+...+.+...+...|..++. .|....+.|+.....+..-+.-..+..+.|+.+|..++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4555666666777777777777777777666666554 3455556666666666655555556678888888877765
Q ss_pred h
Q 014327 322 T 322 (426)
Q Consensus 322 a 322 (426)
.
T Consensus 179 I 179 (184)
T PF05791_consen 179 I 179 (184)
T ss_dssp G
T ss_pred H
Confidence 4
No 235
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=58.91 E-value=1.4e+02 Score=27.01 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=4.7
Q ss_pred HHHHhhhccC
Q 014327 316 QHLKVLTGQA 325 (426)
Q Consensus 316 qrLRvaaGq~ 325 (426)
.|||.+-..+
T Consensus 105 ~rLk~LG~eV 114 (136)
T PF04871_consen 105 ERLKELGEEV 114 (136)
T ss_pred HHHHHcCCCc
Confidence 4455444444
No 236
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=58.84 E-value=77 Score=39.82 Aligned_cols=78 Identities=28% Similarity=0.326 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014327 242 ARSKERKMRYIAELERKVQTLQT-------EATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH-LQDALNDALKE 313 (426)
Q Consensus 242 ~RSReRKkqyieeLE~kVq~Lq~-------ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q-LrdALnEaLk~ 313 (426)
+..+++....|.+|..+|..|+. ++.+|..+++.....+.-|..|+...|.|.+.|..+.. ..-...+.|..
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ 1314 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKS 1314 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34455555555666665555544 45555566666666666677777777777666655421 11223344444
Q ss_pred HHHHHH
Q 014327 314 EIQHLK 319 (426)
Q Consensus 314 EVqrLR 319 (426)
+|.+|+
T Consensus 1315 ei~~Lk 1320 (1822)
T KOG4674|consen 1315 EISRLK 1320 (1822)
T ss_pred HHHHHH
Confidence 444444
No 237
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=58.83 E-value=63 Score=30.46 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
+|..++..|+.|+..|..++..
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 238
>PRK14127 cell division protein GpsB; Provisional
Probab=58.76 E-value=66 Score=28.37 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-------------HHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLT-------------AENSELKLRLQTMEQQV 301 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~-------------sEN~eLK~rLqaLeQQ~ 301 (426)
+.|..++..|+.++..|..++..++.+..... .-|-.+..||..|+.++
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333221 23455566666666554
No 239
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.66 E-value=2.3e+02 Score=29.28 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
.|..+++..++.+++.+ +|-.+|..|......|..+...+...+..|..+-.++...++.
T Consensus 28 kR~El~~~~~~~~ekRd------eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 28 KRDELRKEASELAEKRD------ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555433 3334444444444444444444444444444444444444433
No 240
>PRK00846 hypothetical protein; Provisional
Probab=58.63 E-value=76 Score=26.41 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.+|+.++..|+....-...-+..|..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~ 34 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSE 34 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665555544444444444433
No 241
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=58.62 E-value=36 Score=33.11 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.||..|...|..+...+..|..||.+|+.-...+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~ 159 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQ 159 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888889988887544443
No 242
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.54 E-value=1.8e+02 Score=29.08 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH--LQDALN 308 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q--LrdALn 308 (426)
+|-.++-|+-++---++|.+|+..+...-..+.+|...+..++... |..+|..++..+.+.. ++.++.
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777665432244444444444444433 5556666666655432 555666
Q ss_pred HHHHHHHH
Q 014327 309 DALKEEIQ 316 (426)
Q Consensus 309 EaLk~EVq 316 (426)
+-+...|.
T Consensus 221 ~yae~~i~ 228 (243)
T cd07666 221 DMAENNIS 228 (243)
T ss_pred HHHHHHHH
Confidence 55555544
No 243
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.35 E-value=1.3e+02 Score=28.91 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD 305 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd 305 (426)
.+..|+..+..+......|..++..|++.+..+...-..|+.+...-..+..+..
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~ 154 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRR 154 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555544444444333
No 244
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=58.27 E-value=17 Score=28.81 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQ 272 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~q 272 (426)
+..|.+|+.++..|+.||+.|+..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888888888888887754
No 245
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.15 E-value=2.2e+02 Score=34.58 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+.++..|..++..+...+..+..
T Consensus 887 e~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 887 EEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 246
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=58.07 E-value=60 Score=29.26 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.|+.-..-+.|-+.|.++|..|+-+...++.=|..|+.+|..|+..+.
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556667777777777777777777777777777777775443
No 247
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=58.02 E-value=1.4e+02 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=12.2
Q ss_pred hccHHHHhhhhhcChHHHHHHHHH
Q 014327 214 AMSAAKLAELALIDPKRAKRIWAN 237 (426)
Q Consensus 214 ~~~~~~l~ela~~DpKR~KRil~N 237 (426)
.++.++|.+|- .|+..+..++.+
T Consensus 3 ~lS~~eL~~Ll-~d~~~l~~~v~~ 25 (150)
T PF07200_consen 3 DLSTEELQELL-SDEEKLDAFVKS 25 (150)
T ss_dssp S-TTHHHHHHH-HH-HHHHHHGGG
T ss_pred cCCHHHHHHHH-cCHHHHHHHHHc
Confidence 45666677765 355555555544
No 248
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=57.98 E-value=86 Score=36.58 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+..|+....+|..+++.|+..+.++....++-+.+|+.+.
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~ 147 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLN 147 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333333333333333333333333333333333333
No 249
>PRK00736 hypothetical protein; Provisional
Probab=57.62 E-value=78 Score=25.39 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+|.+|..|+...+-+..-+..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~L 24 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444444444433
No 250
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=57.10 E-value=1.8e+02 Score=28.29 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014327 245 KERKMRYIAELERKVQTL 262 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~L 262 (426)
..-|.++-.-|+.|-..|
T Consensus 131 ~lvk~e~EqLL~YK~~ql 148 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQL 148 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445444445444444
No 251
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.84 E-value=2.1e+02 Score=30.43 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSE---LKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~e---LK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
+.+|...+..++.+...|..++..+.+....+..+-.. ...++..|+.+......+.+.+.+..+..++..
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~ 385 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSK 385 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566777777777777777777777766666655443 345566777777777777777777766666543
No 252
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.79 E-value=1.3e+02 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 285 AENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 285 sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.++..++.+++.++.++.-.+...++|++++..|-
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555545555556666655443
No 253
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=56.76 E-value=1.8e+02 Score=27.64 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 268 SLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 268 ~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.|..-++.|+.+.......|..|...|..+...
T Consensus 78 ~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 78 ELAQVNALLREQLEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444333
No 254
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.60 E-value=2.1e+02 Score=33.99 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------------HhHHHHHHHHHHHHHHHHHHH
Q 014327 239 QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT-----------------NGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 239 eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~-----------------~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+.+.+-=+||...+.+|++-.+.|..+...+...|..|+.++ ..|+...+.|...|..|+.-.
T Consensus 399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777766666666666665555554443 233333444444444444444
Q ss_pred HHHHHHHHH-------HHHHHHHHHhhh
Q 014327 302 HLQDALNDA-------LKEEIQHLKVLT 322 (426)
Q Consensus 302 qLrdALnEa-------Lk~EVqrLRvaa 322 (426)
.+.+.|.|. |.+||..++.+.
T Consensus 479 e~~EQL~Esn~ele~DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 479 EMNEQLQESNRELELDLREELDMAKGAR 506 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444444333 556666554443
No 255
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=56.56 E-value=1.8e+02 Score=27.42 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014327 244 SKERKMRYIAELERKVQTLQT 264 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ 264 (426)
-|.++..++..++..+...+.
T Consensus 129 ~R~~~~~~~~~a~~~l~kkk~ 149 (236)
T PF09325_consen 129 RRDKKLIEYQNAEKELQKKKA 149 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333
No 256
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=56.29 E-value=3.2e+02 Score=31.49 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV----HLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~----qLrdALnEaLk~EVqrLRvaa 322 (426)
-|-.+|++|......|....+.-.+++..+.-.+..|..|...++.....+.+.. .-+-..-+.|..||..+|+.+
T Consensus 605 nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a 684 (786)
T PF05483_consen 605 NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTA 684 (786)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555544444443333322 222244566777888888776
Q ss_pred cc
Q 014327 323 GQ 324 (426)
Q Consensus 323 Gq 324 (426)
.+
T Consensus 685 ~E 686 (786)
T PF05483_consen 685 DE 686 (786)
T ss_pred HH
Confidence 54
No 257
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=56.27 E-value=62 Score=26.00 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
.....+..++..++++...+..||.+|+.++..|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455566666666666667777777777666654
No 258
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.24 E-value=61 Score=36.40 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=20.6
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
++..|+-....|.+|..++..+++++.+....+....++|+.+|...
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 33334344444444444444444444444433333344444444433
No 259
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.05 E-value=42 Score=36.55 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
.+-+.++.+|+.+...|+.++.++.+....++.+.++|.
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLE 110 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLG 110 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 455666666665555555444444444333333333333
No 260
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=55.78 E-value=1.2e+02 Score=32.71 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014327 232 KRIWANRQSAARSKE 246 (426)
Q Consensus 232 KRil~NReSA~RSRe 246 (426)
.+.+.++..|...+.
T Consensus 87 ~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 87 LRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444544444
No 261
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.54 E-value=1.2e+02 Score=30.87 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=5.6
Q ss_pred CccccCccCCCC
Q 014327 83 HRRAHSEILTLP 94 (426)
Q Consensus 83 HRRa~Se~~~lp 94 (426)
+|--+=|.|+-|
T Consensus 6 pr~iSmenFrtP 17 (267)
T PF10234_consen 6 PRLISMENFRTP 17 (267)
T ss_pred CCCCcHHHcCCC
Confidence 333344445555
No 262
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.52 E-value=44 Score=26.19 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=10.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
+..++.++..+..+|..|+.+++.|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444444
No 263
>PF14282 FlxA: FlxA-like protein
Probab=55.28 E-value=66 Score=27.80 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 014327 254 ELERKVQTLQT 264 (426)
Q Consensus 254 eLE~kVq~Lq~ 264 (426)
.|+.++..|+.
T Consensus 23 ~L~~Qi~~Lq~ 33 (106)
T PF14282_consen 23 QLQKQIKQLQE 33 (106)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 264
>COG5293 Predicted ATPase [General function prediction only]
Probab=55.27 E-value=2.5e+02 Score=30.92 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 232 KRIWANRQSAARSKERKMR-YIAELERKVQTLQTEATSLS---------AQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 232 KRil~NReSA~RSReRKkq-yieeLE~kVq~Lq~ENs~Ls---------~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
++|..||-+=-.+.-.|.+ -+.+++.+++.|..+...+. ...+.|...+..++.|..++..+++.+.+-.
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~ 409 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLH 409 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 3566666555554443332 23444444444444433322 3456667777778888888888888877776
Q ss_pred HHHHHHHH
Q 014327 302 HLQDALND 309 (426)
Q Consensus 302 qLrdALnE 309 (426)
.+.+.+++
T Consensus 410 ~~~~~i~~ 417 (591)
T COG5293 410 ALDQYIGT 417 (591)
T ss_pred HHHHHHHH
Confidence 66665543
No 265
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=55.17 E-value=19 Score=34.37 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
+-.|.+|..+++ .+..++.+.||+.+|..|+.+...+...+..|.
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555444 667778888999999888876666666555554
No 266
>PF15294 Leu_zip: Leucine zipper
Probab=54.96 E-value=48 Score=33.79 Aligned_cols=53 Identities=26% Similarity=0.396 Sum_probs=43.6
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 274 TLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 274 ~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
.+|...+..|..||..||.+|..++.++-.---....|..++..|+...|..-
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45889999999999999999999999987665667778888888888655443
No 267
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=54.89 E-value=14 Score=27.55 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 265 EATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 265 ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
.|+.+..++..+...+..|..||-.|+.++
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555543
No 268
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.88 E-value=57 Score=34.21 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 014327 252 IAELERKVQTL 262 (426)
Q Consensus 252 ieeLE~kVq~L 262 (426)
+++|..+|..|
T Consensus 48 N~~Lk~eVerL 58 (420)
T PF07407_consen 48 NNDLKIEVERL 58 (420)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 269
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=54.77 E-value=88 Score=34.44 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 014327 240 SAARSKERKMRYIAELERKVQT---LQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH-LQDAL 307 (426)
Q Consensus 240 SA~RSReRKkqyieeLE~kVq~---Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q-LrdAL 307 (426)
-...+.+++++|-.||-+--.. -+++...|.-.|.-.++++..+..+++.++..+..|+.+.+ ++|.+
T Consensus 36 ~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 36 DFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3677888888888877543333 34555666677777788889999999999999999998866 44444
No 270
>PF13166 AAA_13: AAA domain
Probab=54.59 E-value=2.9e+02 Score=30.73 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
+..+...+..+..+...+...+..+......+..+...++.++..++.++.-.+..-+.+..++..|
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444444444555555555555555555555666666666666666655443334444444554444
No 271
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.57 E-value=3.3e+02 Score=29.94 Aligned_cols=7 Identities=14% Similarity=0.040 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014327 249 MRYIAEL 255 (426)
Q Consensus 249 kqyieeL 255 (426)
+.+..+.
T Consensus 50 ke~~~Ea 56 (514)
T TIGR03319 50 KEALLEA 56 (514)
T ss_pred HHHHHHH
Confidence 3333333
No 272
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=54.35 E-value=1.8e+02 Score=26.74 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=16.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 253 AELERKV-QTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 253 eeLE~kV-q~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
++||..+ -.++..+..-..++..|+.-+..+..+-..|+..
T Consensus 85 ~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 85 KSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 3333333334444444444333333333333333
No 273
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.24 E-value=1.4e+02 Score=34.36 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
--+.|.+||+||+.+..|...|+.++..|..
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3578999999999999999999988775543
No 274
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=54.16 E-value=4e+02 Score=31.55 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
++-.-+.+--+++..+...+.+-+.+|...|..++.+...+..+...
T Consensus 445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~ 491 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTES 491 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445666777888888877777888888777777766554433333
No 275
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=54.03 E-value=3.1e+02 Score=29.65 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK---LRLQTMEQQVHLQDALNDALKEE 314 (426)
Q Consensus 238 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK---~rLqaLeQQ~qLrdALnEaLk~E 314 (426)
+..|++...+-++.+..|-...+.|+++..+|..+-..|..+...|..+.++|. .+|..-...+.++.+..+.-..+
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~ 204 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQN 204 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhh
Q 014327 315 IQHLKVLT 322 (426)
Q Consensus 315 VqrLRvaa 322 (426)
+..-+.+.
T Consensus 205 la~r~~a~ 212 (499)
T COG4372 205 LATRANAA 212 (499)
T ss_pred HHHHHHHH
No 276
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.88 E-value=51 Score=25.81 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
....+.+|+.++..++.++..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666666666666666666666655
No 277
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.86 E-value=57 Score=29.28 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
-+..|..-+.+|+.++.+|+....+|..+-..++.+
T Consensus 64 vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~ 99 (119)
T COG1382 64 VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQER 99 (119)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677788888877777766666655544443
No 278
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=53.85 E-value=44 Score=36.26 Aligned_cols=70 Identities=27% Similarity=0.375 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERK----VQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~k----Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
.|+..|+|+. -|-|.|+|+-..|-.+| |..|+.......++...|+++...|+.+|..|-.+|..++..+
T Consensus 243 TKaEEriLKr----vRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 243 TKAEERILKR----VRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred hHHHHHHHHH----HHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4566666532 24456666666665554 5567777788888888999999999999999888887776543
No 279
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.81 E-value=95 Score=34.47 Aligned_cols=76 Identities=11% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH--------LQDALNDALKEEIQHLK 319 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q--------LrdALnEaLk~EVqrLR 319 (426)
++.-+++++.+|++|+..+-.=-..+....++...|..|-+..+..+..+..++. ...++..+-+..+.+|+
T Consensus 189 ~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 3556777778888777652111122333333444444444444443333333222 12233344445566666
Q ss_pred hhhc
Q 014327 320 VLTG 323 (426)
Q Consensus 320 vaaG 323 (426)
..++
T Consensus 269 ~~~~ 272 (555)
T TIGR03545 269 NKYA 272 (555)
T ss_pred HHhC
Confidence 6665
No 280
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=53.76 E-value=2.6e+02 Score=32.54 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=10.3
Q ss_pred HHHHHHHhhhccCC
Q 014327 313 EEIQHLKVLTGQAM 326 (426)
Q Consensus 313 ~EVqrLRvaaGq~~ 326 (426)
+||.|||.++--+.
T Consensus 536 aEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 536 AEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888776554
No 281
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.68 E-value=1.7e+02 Score=26.43 Aligned_cols=55 Identities=9% Similarity=0.235 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
.=.+.|+.|..++.....-......++..++.+...+..+-..+...+..|+...
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888888888888888888888888888888888888777777654
No 282
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=53.60 E-value=1.3e+02 Score=34.47 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
+..+..|+.....|+.++..-...+..|..||..||.++.+-..+...-+.....|..|+..++....+
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334556677777888888888888888999999999998877777776677777788887777665444
No 283
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=53.55 E-value=2.8e+02 Score=28.77 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ 304 (426)
Q Consensus 238 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLr 304 (426)
-++++|-..-....+.++|...+.-+........+-..++..+..|.+||--|+.+|......+-.+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~k 247 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNK 247 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777888777777777777777777777777777777777777776655554433
No 284
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.54 E-value=1.1e+02 Score=24.12 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 257 RKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 257 ~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
.||..|..++.+|..++..|..++..|..+-...|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666555555555444333
No 285
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=53.49 E-value=2.5e+02 Score=29.12 Aligned_cols=69 Identities=26% Similarity=0.291 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL--------QTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL--------qaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
+.||.++..|+.||.-|+.+|..........+.-..-+..++ ...+.+..+.+--|..|..++.+||--
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr 293 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKER 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467889999999999999998887665433332222233233 333445556666677888888888754
No 286
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.47 E-value=99 Score=32.54 Aligned_cols=8 Identities=13% Similarity=0.650 Sum_probs=3.5
Q ss_pred hhhhhccc
Q 014327 121 DLLSMYLD 128 (426)
Q Consensus 121 dlfs~y~d 128 (426)
+|++.|-|
T Consensus 130 ~l~a~f~~ 137 (365)
T KOG2391|consen 130 ELIAAFSE 137 (365)
T ss_pred HHHHHhcC
Confidence 34444443
No 287
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.45 E-value=1.4e+02 Score=33.02 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDA 306 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdA 306 (426)
.++..+|..++.+...+..++..++..+..|+++...++.++..+..+....+.
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~ 261 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE 261 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666777777777776666666666655544443
No 288
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=53.36 E-value=2.9e+02 Score=32.18 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTL-------LQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~-------Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
|+.-|..|-.++.++......++..|.. .+.....|.+++-.|+.+|.....+
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~ 358 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333 3444444444444444444443333
No 289
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=53.34 E-value=69 Score=35.58 Aligned_cols=64 Identities=30% Similarity=0.246 Sum_probs=41.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+|+|-.||.. |+=|-+.-..+-++-+. .-...|.++|..|..++..|..||-.||.+|..+..+
T Consensus 275 ~d~kv~krqQ---------RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 275 SDIKVLKRQQ---------RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred cCHHHHHHHH---------HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 6888888753 34444434444333321 1224577888888888888888888888888777654
No 290
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=53.03 E-value=1.6e+02 Score=25.86 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
..|-.-|-+-+..+..|..+|..-...+..++.|+..|..+.+.|..++.
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666665555555566666666665555555443
No 291
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=52.99 E-value=81 Score=34.45 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEA----------TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ-------VHLQDALNDALKEEIQ 316 (426)
Q Consensus 254 eLE~kVq~Lq~EN----------s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ-------~qLrdALnEaLk~EVq 316 (426)
-||.+|+.|+... ..|...+..|..+.-.+.-|.+.+...|+.|..- ++-.....+.|.-|+.
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4677777777654 6688888888888888888888888777766532 2223344566666666
Q ss_pred HHHhhh
Q 014327 317 HLKVLT 322 (426)
Q Consensus 317 rLRvaa 322 (426)
.+++-+
T Consensus 422 K~k~ny 427 (527)
T PF15066_consen 422 KIKANY 427 (527)
T ss_pred HHhhhH
Confidence 555443
No 292
>PF15058 Speriolin_N: Speriolin N terminus
Probab=52.64 E-value=34 Score=33.20 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
.+.|..+++.|-.||.+|++++.+ ..||.+||.-|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrL--------irEN~eLksaL 41 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRL--------IRENHELKSAL 41 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHH
Confidence 456778888889999999988875 45788888753
No 293
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=52.64 E-value=25 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
-|+.+++.|..+++.++.+|..|..+|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788888888888888888888877654
No 294
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=52.63 E-value=1.4e+02 Score=28.96 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 269 LSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 269 Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
...+|..|......+...|.++..-+..|+.++.
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666777777777777777777777765554
No 295
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=52.33 E-value=1.2e+02 Score=30.85 Aligned_cols=19 Identities=32% Similarity=0.184 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 014327 306 ALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 306 ALnEaLk~EVqrLRvaaGq 324 (426)
...+..++||++|+....+
T Consensus 285 q~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 285 QKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455667777654433
No 296
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.29 E-value=1.7e+02 Score=31.64 Aligned_cols=65 Identities=31% Similarity=0.367 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQR----DTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMP 327 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqr----q~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~ 327 (426)
..+++.|+.+.+.+++++...-. ....|..|-..|+.+|..++ ...+.+..+++.+-....-++.
T Consensus 42 ~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e-------~~~~~~~~~l~~~ll~ipNi~~ 110 (429)
T COG0172 42 LRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELE-------AALDELEAELDTLLLTIPNIPH 110 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHhCCCCCc
Confidence 33444455555555555542111 12334444444444444444 4445566677666666655553
No 297
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.15 E-value=54 Score=32.68 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=5.5
Q ss_pred chhhhhhccc
Q 014327 119 EEDLLSMYLD 128 (426)
Q Consensus 119 ~~dlfs~y~d 128 (426)
|+||..+.-.
T Consensus 26 E~DL~~~~~~ 35 (248)
T PF08172_consen 26 ENDLAKVQAS 35 (248)
T ss_pred HHHHHHHhcc
Confidence 5566655544
No 298
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=51.94 E-value=2.9e+02 Score=28.48 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=7.2
Q ss_pred chhhh-hhcccccc
Q 014327 119 EEDLL-SMYLDMDK 131 (426)
Q Consensus 119 ~~dlf-s~y~d~~~ 131 (426)
-+|.+ .+|++|..
T Consensus 51 l~~~v~A~~~~iP~ 64 (312)
T smart00787 51 LDQYVVAGYCTVPL 64 (312)
T ss_pred HHHHHHHhcCCCcH
Confidence 34444 45777754
No 299
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.80 E-value=50 Score=25.59 Aligned_cols=48 Identities=29% Similarity=0.402 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
|++..|++||.++..-. |...+ .-......+..|..||..|+.+|.-+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777877776544 21111 12233455556677777777666443
No 300
>KOG3227 consensus Calcium-responsive transcription coactivator [Transcription]
Probab=51.79 E-value=27 Score=34.31 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
|+.+-+||..|-..|- +-++.+..+|..++...|
T Consensus 25 IQk~LdEN~~LI~~I~--e~Qn~Gk~~EC~qyq~~L 58 (231)
T KOG3227|consen 25 IQKMLDENKHLIQCIV--ESQNKGKLSECAQYQALL 58 (231)
T ss_pred HHHHHHhhhHHHHHHH--HhhccchHHHHHHHHHHH
Confidence 3444456666654433 334445555555554433
No 301
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.79 E-value=1.3e+02 Score=32.49 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
..+-.+...|.+|...+.+.++...-.+..|..||..|..+.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666666777777766554
No 302
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=51.43 E-value=87 Score=30.29 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=38.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
+..+...+..+..||..|...|..+-++....++....|....+.|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888899999988888888888777888888777777764
No 303
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=51.37 E-value=92 Score=25.61 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 269 LSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDA 310 (426)
Q Consensus 269 Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEa 310 (426)
+-.-|..++.+...++-|+-.|++.|..+++++-..=..+++
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DA 47 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDA 47 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344567888999999999999999998888776533333333
No 304
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=51.27 E-value=3.8e+02 Score=29.71 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=8.4
Q ss_pred HhHHhHHHHHHHHHHHHHHHH
Q 014327 278 RDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 278 rq~~~L~sEN~eLK~rLqaLe 298 (426)
..+...+.|...|+.....|.
T Consensus 337 ~eie~kEeei~~L~~~~d~L~ 357 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELH 357 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHH
Confidence 333333344444444444443
No 305
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=50.97 E-value=2.8e+02 Score=28.13 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.|+.++..++.+...+..++..+
T Consensus 148 ~l~~~i~~~~~~i~~~~~~l~~~ 170 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQAQLQAL 170 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443443333333
No 306
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.93 E-value=1.6e+02 Score=35.96 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 014327 301 VHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 301 ~qLrdALnEaLk~EVqrLRvaa 322 (426)
+..+.+...-|.+++.++....
T Consensus 1726 L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1726 LEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444555566655554433
No 307
>PRK12704 phosphodiesterase; Provisional
Probab=50.60 E-value=3.8e+02 Score=29.51 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
.+...|.+....|.....+|..+..
T Consensus 93 ~Ree~Le~r~e~Lekke~eL~~re~ 117 (520)
T PRK12704 93 QKEENLDRKLELLEKREEELEKKEK 117 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443333
No 308
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=50.53 E-value=2.1e+02 Score=29.51 Aligned_cols=83 Identities=20% Similarity=0.329 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQH 317 (426)
Q Consensus 238 ReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqr 317 (426)
+.+.-+-.+++ .+|..++..+..+...|.+++..+......|..+-.+|..+++.+.....-.-+-...|..++.-
T Consensus 19 k~~~~e~~ekR----~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~ 94 (294)
T COG1340 19 KEEIEELKEKR----DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRE 94 (294)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444 78888888898999999999999988888888888888888888876543222333336666666
Q ss_pred HHhhhcc
Q 014327 318 LKVLTGQ 324 (426)
Q Consensus 318 LRvaaGq 324 (426)
|+-....
T Consensus 95 l~e~~~~ 101 (294)
T COG1340 95 LKEKRNE 101 (294)
T ss_pred HHHHhhh
Confidence 6665544
No 309
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.27 E-value=1.9e+02 Score=30.29 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
-.++|+...+.|+........+++.+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655555444444
No 310
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.26 E-value=2e+02 Score=32.12 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
..+..++..|+.+...+..++..+..+...+..+...+..++..++
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 311
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=50.08 E-value=36 Score=30.29 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 268 SLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 268 ~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
.|+.++..|...+..|+.||.-||.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455556665553
No 312
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=49.90 E-value=1.2e+02 Score=27.27 Aligned_cols=50 Identities=30% Similarity=0.424 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 269 LSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 269 Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
|..+...+.++...=+.|-.+++.+|..|+.+..-.+.+++.|...|.-|
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666667777788888888877777777766665555333
No 313
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.79 E-value=1.7e+02 Score=27.04 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSA---QLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALK 312 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~---ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk 312 (426)
..|+..|.+...+...|.. -+..|+..+..|..+|...+...++--.+..+..++..+|.
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 34455555555666666444433333333333444444433
No 314
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.71 E-value=1.1e+02 Score=35.63 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+|..++..|+.|..+|..-+..+
T Consensus 110 iLQn~c~~lE~ekq~lQ~ti~~~ 132 (1265)
T KOG0976|consen 110 ILQNKCLRLEMEKQKLQDTIQGA 132 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 315
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=49.46 E-value=1.3e+02 Score=28.00 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQ-RDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lq-rq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.+||...-.+....+.|+.++..++ .+...|..++..|+..+..|++++. .|+..|+
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~----------~ei~~l~ 104 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR----------EEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
No 316
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.44 E-value=2.5e+02 Score=27.13 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-...+..||..|...+..+.+.+..|...+..|..+-+.|.++.-
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666665555554443
No 317
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=49.41 E-value=1.6e+02 Score=29.14 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH-------HHHHHHHHHHHHHH
Q 014327 230 RAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENS-------ELKLRLQTMEQQVH 302 (426)
Q Consensus 230 R~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~-------eLK~rLqaLeQQ~q 302 (426)
|++.+-.-=..|+..-.+...-+..|+.+.+.++.+...|......+...+..|..+.. .|..++......+.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333455556666677788888888888887777776666666666665443 34445555544444
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 014327 303 LQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 303 LrdALnEaLk~EVqrLRva 321 (426)
......+....|..+|+.-
T Consensus 93 ~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 93 RLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666543
No 318
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=49.26 E-value=3.3e+02 Score=28.38 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014327 239 QSAARSKERKMRYIAELERKVQTLQTEATSLSA--------------QLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ 304 (426)
Q Consensus 239 eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~--------------ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLr 304 (426)
+..+.-|..-+.-++.|..+.+.|+.....+.. ....|..-......+|+.|+..+..|.+.+.-.
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666666554444431 222233333444455555555555555544433
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 014327 305 DALNDALKEEIQHLKVLT 322 (426)
Q Consensus 305 dALnEaLk~EVqrLRvaa 322 (426)
..-+..|+..+.++|+..
T Consensus 99 qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGD 116 (319)
T ss_pred hchHHHHHHHHHhhhhhh
Confidence 333445555555555443
No 319
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=49.25 E-value=2.8e+02 Score=31.50 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 240 SAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 240 SA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
.+.+-|..=+.-|+.|...|..|..+...+..++......+.....+-.+++.+
T Consensus 76 ~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 76 NEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556667777777777776666666666655555555554444433
No 320
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.25 E-value=4.1e+02 Score=31.98 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
++..-.+.|.-.+..|+.+...+..++..+...+..|..|+..|...+...+
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444456667777777777777777777777777777777777766654443
No 321
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=49.25 E-value=2.2e+02 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEAT 267 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs 267 (426)
++--|..|...-..-..+...+++|..++..|+.++.
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3333444443333333334445555555555555554
No 322
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.24 E-value=1.3e+02 Score=23.87 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 014327 266 ATSLSAQLTLL 276 (426)
Q Consensus 266 Ns~Ls~ql~~L 276 (426)
|-.+..+|...
T Consensus 27 n~~~e~kLqea 37 (61)
T PF08826_consen 27 NLAFESKLQEA 37 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 323
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.96 E-value=1.3e+02 Score=32.73 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcc
Q 014327 265 EATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ-DALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 265 ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLr-dALnEaLk~EVqrLRvaaGq 324 (426)
+...|.++|...+.+...+..|...|..++..-..-..++ .+.++..++|++.||++.-.
T Consensus 260 sl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~k 320 (575)
T KOG4403|consen 260 SLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666654221111122 25577777788888776543
No 324
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.88 E-value=1.5e+02 Score=29.40 Aligned_cols=84 Identities=26% Similarity=0.372 Sum_probs=55.9
Q ss_pred hhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHhHHH
Q 014327 212 KKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLT------LLQRDTNGLTA 285 (426)
Q Consensus 212 kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~------~Lqrq~~~L~s 285 (426)
-|+.|.+-|..-+..||+-..| ...+..=...|.+|...|..++.|...|..... .-......|..
T Consensus 99 tKafSkeGL~~~~k~dp~e~ek--------~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~ 170 (233)
T PF04065_consen 99 TKAFSKEGLMAASKLDPKEKEK--------EEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELES 170 (233)
T ss_pred ccccchhhhhcccccCcchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHH
Confidence 4566777777666667876553 455677788899999999999999988876432 23444445555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014327 286 ENSELKLRLQTMEQQVHL 303 (426)
Q Consensus 286 EN~eLK~rLqaLeQQ~qL 303 (426)
-...++-++..|+.-+.+
T Consensus 171 ~ierhk~Hi~kLE~lLR~ 188 (233)
T PF04065_consen 171 RIERHKFHIEKLELLLRL 188 (233)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666654443
No 325
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=48.74 E-value=2.6e+02 Score=27.12 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
.++++..++.+......++..+...+..|..+
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~e 149 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEE 149 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Confidence 33333333333333333333333333333333
No 326
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=48.68 E-value=1.5e+02 Score=32.93 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H----HhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLL---Q----RDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~L---q----rq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-++.||.++..|+.+...|..++..- . .....|..|..+++.+|+.+..+..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~ 622 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWL 622 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888887776431 1 1355556666666766666666654
No 327
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.26 E-value=1.2e+02 Score=30.51 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhccCC
Q 014327 308 NDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 308 nEaLk~EVqrLRvaaGq~~ 326 (426)
..++..+++-||+.+|..+
T Consensus 91 ~~~ie~~l~~l~~~aG~v~ 109 (247)
T COG3879 91 DAALEDRLEKLRMLAGSVP 109 (247)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 3445568888999998876
No 328
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=47.92 E-value=1.4e+02 Score=28.01 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
+.++++++.|.-|.-.=..|-.-..+|..|+...+..+..+...|+.|-..
T Consensus 84 ~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 84 KEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888887777777777666665443
No 329
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=47.83 E-value=1.7e+02 Score=25.72 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 263 QTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 263 q~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
.+.|..|..-|-.-+.....|..+.+.-...|..++++.-...--|+.|.+.|..|.-
T Consensus 11 raQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 11 RAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333334555555554443
No 330
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=47.80 E-value=3.3e+02 Score=27.91 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+=..+.+..|+--....+--..|-.+||..+..|++.|..|...+..|
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777788888888877777777666555443
No 331
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=47.76 E-value=2.8e+02 Score=29.58 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=54.1
Q ss_pred ccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 215 MSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 215 ~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
|-...++-|+. -.||-+.+++.-+ .-|+++.+|..+-..-+..|+.|...|..++..-..+....+.+...|...|
T Consensus 101 mQe~~~s~LaA-aE~khrKli~dLE---~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qL 176 (561)
T KOG1103|consen 101 MQENAASLLAA-AEKKHRKLIKDLE---ADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQL 176 (561)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555553 3455555665544 3577888888888888899999999999999888777777777766666655
Q ss_pred H
Q 014327 295 Q 295 (426)
Q Consensus 295 q 295 (426)
.
T Consensus 177 e 177 (561)
T KOG1103|consen 177 E 177 (561)
T ss_pred H
Confidence 4
No 332
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.51 E-value=1.5e+02 Score=24.06 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
|-..|..|-..-+.|....-.+...+..|+..+..++.+...|+.++..++..+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677887777788877777888888888888888888888888777776544
No 333
>PRK00106 hypothetical protein; Provisional
Probab=47.36 E-value=4.4e+02 Score=29.32 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAELERKVQTLQTE 265 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~E 265 (426)
....+..++.+..+.+.++...+.+
T Consensus 63 ~~EAke~~ke~~lEaeeEi~~~R~E 87 (535)
T PRK00106 63 KRESKALKKELLLEAKEEARKYREE 87 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555544444443
No 334
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.31 E-value=1.6e+02 Score=27.48 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=9.4
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
.++..+..+....+.|...||.+.+
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444433
No 335
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=47.27 E-value=1.2e+02 Score=32.49 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 237 NRQSAARSKERKMRYIAELERKV 259 (426)
Q Consensus 237 NReSA~RSReRKkqyieeLE~kV 259 (426)
.-+-=||-|+.=..+|.||-.-|
T Consensus 237 HNeVERRRR~nIN~~IkeLg~li 259 (411)
T KOG1318|consen 237 HNEVERRRRENINDRIKELGQLI 259 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555666666666665544
No 336
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=47.22 E-value=3e+02 Score=30.84 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDA 310 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEa 310 (426)
.+.|..++..|..|...+..+..++.........|..+-..|+.+.+.++.+..+..+..+.
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578888899999999999999999999999999999999999998888888877766554
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.15 E-value=5e+02 Score=29.88 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
...|.+|+.+++.|+.....|..++..+
T Consensus 578 l~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 578 LKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555544444444444433
No 338
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.15 E-value=3.5e+02 Score=30.73 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 237 NRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQ--------------LTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 237 NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~q--------------l~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.-++++..++|-...|.+||.+++.+..|....+.+ -.+-+-+...+.+|.+.+|++|-.|+.-+.
T Consensus 344 Elea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 344 ELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 457888888999999999999999998887655322 122234566778899999999988887766
Q ss_pred HHH
Q 014327 303 LQD 305 (426)
Q Consensus 303 Lrd 305 (426)
.-+
T Consensus 424 WTE 426 (832)
T KOG2077|consen 424 WTE 426 (832)
T ss_pred HHH
Confidence 543
No 339
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.08 E-value=1.3e+02 Score=33.65 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
.+..|+.|+.|+..|..++.....+...-..---+|-.+-..|++++.-.++..+.++.|+..++.+.|+..
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~ 77 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYR 77 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777766666555443333222333333445555555556778888888888888877754
No 340
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.04 E-value=2.1e+02 Score=25.41 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 232 KRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 232 KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
..+-..+.....-|.....-...|+..-..+..+-..|..++..+...+..|..+|+-|-.+|+.+
T Consensus 66 ~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 66 EELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 341
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.92 E-value=2e+02 Score=29.66 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQ-----TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD 305 (426)
Q Consensus 251 yieeLE~kVq~Lq-----~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd 305 (426)
.|++|...+..++ .|.....+||++- .-..|.++||+=|++|..-+.-+|
T Consensus 90 EI~eLksQL~RMrEDWIEEECHRVEAQLALK-----EARkEIkQLkQvieTmrssL~ekD 144 (305)
T PF15290_consen 90 EIDELKSQLARMREDWIEEECHRVEAQLALK-----EARKEIKQLKQVIETMRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhchhh
Confidence 3666666555543 3556666666643 345678888888888876655443
No 342
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=46.84 E-value=2e+02 Score=29.22 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 257 RKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 257 ~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
.+++.|+.+...++..+..++.. ..+.....++..+.+.++.+...........+.++.+||.-.
T Consensus 175 ~~i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 175 HEISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred HHHHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444432222211 223333444444444444444444444444555555555443
No 343
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=46.71 E-value=1.6e+02 Score=26.53 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+..|+.||..|.+|.-.=...+..+-..+..|..+++.|+.-|..|+
T Consensus 16 v~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 16 VQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333344444444444444444444444433
No 344
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.46 E-value=4.4e+02 Score=28.99 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=8.9
Q ss_pred ccccCCCCCCCCCC
Q 014327 401 IKMRGSVPSPNQKE 414 (426)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (426)
-.++|..-..+.||
T Consensus 193 ~ALkgd~K~rG~WG 206 (475)
T PRK10361 193 RALKGDNKTQGNWG 206 (475)
T ss_pred HHHcCCCCcCcchH
Confidence 44566666777783
No 345
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=46.35 E-value=30 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
|..-+++|+.++..|+.||..|+.+|..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34568999999999999999999887643
No 346
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=46.21 E-value=2e+02 Score=29.28 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAAR-SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 233 Ril~NReSA~R-SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.-|+|||..-. +|.||..-.. ++..|+... --..+|..|++++..++.|+.....+|..+..+
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d----~I~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQD----EIAKLKYKD-PQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHH----HHHHHHhcC-CCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34677776644 4444443222 222333221 123456677777777777777777777777654
No 347
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.14 E-value=2.9e+02 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---CCCchhhhhcC
Q 014327 40 SSFPPLAPGGSSSDGSHFGHQSD---SNRFSHDLSRM 73 (426)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~ 73 (426)
+.-++..|.+....++|...... ..+-..||++.
T Consensus 30 s~~e~~~p~~~~~s~~~~~~~~~~~~~~r~~~d~~~~ 66 (1293)
T KOG0996|consen 30 SDMEQEEPSGDVESPATAAETESEEGGERSLEDLLNS 66 (1293)
T ss_pred hhccccCCCCCccchhhhhccCCcccCccchhhhhcc
Confidence 33444556655555555543321 33445577754
No 348
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.09 E-value=97 Score=29.80 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~ 274 (426)
|+.+|+.|+.++..+.+++.
T Consensus 91 l~ek~q~l~~t~s~veaEik 110 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIK 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 349
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.01 E-value=4.1e+02 Score=31.93 Aligned_cols=97 Identities=26% Similarity=0.304 Sum_probs=62.7
Q ss_pred HhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 211 SKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKE----RKMRY------IAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 211 ~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSRe----RKkqy------ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
+|+++-.+...|++ |+| ++..|+|.|. -+.+| ..+...+++.|+.|...+..++..++...
T Consensus 401 ~K~~llKd~~~EIe-----rLK----~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIE-----RLK----RDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHH-----HHH----HHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445455555544 554 4455666553 23444 34556677888888888888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 281 NGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQ 316 (426)
Q Consensus 281 ~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVq 316 (426)
..+...+..|+.++..++..++......+.+++|+.
T Consensus 472 ~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 472 MNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ 507 (1041)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888776655544444444433
No 350
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.91 E-value=47 Score=35.69 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 268 SLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 268 ~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.+.-....+.+...+|...-.+|+.+...+-.-+.
T Consensus 159 ~~~~n~r~~s~~~~~l~~~w~~l~Vk~~~f~~~~~ 193 (505)
T COG5624 159 WRPVNFRGQSRNANGLFGAWPYLEVKSKDFGEGCG 193 (505)
T ss_pred cCchhHhhhHHHHHHHhccCceeEEeHHhhhhhhc
Confidence 33333444444444555444455555544444333
No 351
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=45.87 E-value=2.8e+02 Score=26.54 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLS 270 (426)
Q Consensus 233 Ril~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls 270 (426)
|++.-=..+-.-|.++..|...++..+..+.+...+|.
T Consensus 98 r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 98 RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433344566677777777777777777776666664
No 352
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=45.84 E-value=1.8e+02 Score=24.90 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEA-TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~EN-s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
=..|-..=|.||..|..-. .....++..|+.++..|..||..|+.+|.....+
T Consensus 25 h~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 25 HALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888886322 4466777778888888888888888777666544
No 353
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.83 E-value=1e+02 Score=33.72 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE------NSELKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE------N~eLK~rLqaLeQQ~qLrdALn 308 (426)
+++.+++.++.+...+..++..++.++..|..- -.+|..++..|.....+.+.+.
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~ 232 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQ 232 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHH
Confidence 333344444444444444444444444444332 2335555555555555544443
No 354
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.78 E-value=4.7e+02 Score=32.76 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATS 268 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~ 268 (426)
+.+|+.++..|+.+...
T Consensus 316 L~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 316 LAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 355
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=45.78 E-value=58 Score=25.24 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+...--.....++..|+.||..|.++|..++.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333456667777888888888888876653
No 356
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.67 E-value=81 Score=26.18 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 263 QTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 263 q~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
..+...+..++..++++...|..||..|+.++..+..-..
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~r 73 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSR 73 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 3445666677778888888888888888888877765444
No 357
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.64 E-value=1.1e+02 Score=31.58 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=33.5
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 225 LIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 225 ~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
.+.|||.+-... ...-......+.+.+.++..++.+...|..++.....+...|..+......+|..
T Consensus 215 ~V~P~~~~l~~a-----~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 215 EVEPKRQKLEEA-----EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356777654332 2222333344445555555555555555555555555555555555555555433
No 358
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=45.63 E-value=6.9 Score=44.00 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 242 ARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 242 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
.++| +|..-+..|.++|+.|+..|..|..++..|.
T Consensus 318 e~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LE 352 (713)
T PF05622_consen 318 EKYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLE 352 (713)
T ss_dssp ------------------------------------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5888899999999999998877665555553
No 359
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=45.52 E-value=2.3e+02 Score=27.67 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
----|..-|-.|...+..+..+......++..+......-..|......+|+.....+.+..--...|..|+..||....
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 33445556666666666666666666666665554443333333334444444333333333334456667777877666
Q ss_pred cC
Q 014327 324 QA 325 (426)
Q Consensus 324 q~ 325 (426)
..
T Consensus 105 ~~ 106 (202)
T PF06818_consen 105 CA 106 (202)
T ss_pred hh
Confidence 65
No 360
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.44 E-value=3.2e+02 Score=31.41 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
.+++++|..|+.+......++..++.....|......|..|++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554455555554444444444444444433
No 361
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.32 E-value=3.1e+02 Score=33.41 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 236 ANRQSAARSKERKMRYIAELERKVQTLQTEATS 268 (426)
Q Consensus 236 ~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~ 268 (426)
+........++++..-|.+|+.++..+..+...
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klk 875 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ 875 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555554444444444333
No 362
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.07 E-value=3.4e+02 Score=29.41 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=5.7
Q ss_pred hHHhHHHHHHHHHHHH
Q 014327 279 DTNGLTAENSELKLRL 294 (426)
Q Consensus 279 q~~~L~sEN~eLK~rL 294 (426)
++..+..+..+|..++
T Consensus 139 ~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 139 EIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 363
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.96 E-value=1.3e+02 Score=25.64 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLL---QRDTNGLTAENSELKLRLQTMEQQVHLQDA 306 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~L---qrq~~~L~sEN~eLK~rLqaLeQQ~qLrdA 306 (426)
|+.||.++..+......+..++..- ......|+.|...|+.++...+.++...+.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5555555555544444443333221 234455666777777777666666654433
No 364
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.86 E-value=4.1e+02 Score=32.74 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMR 250 (426)
Q Consensus 238 ReSA~RSReRKkq 250 (426)
|..+...+.++.+
T Consensus 265 ~~~~~~~~~~~~~ 277 (1353)
T TIGR02680 265 RRRATRLRSAQTQ 277 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 3334443433333
No 365
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.75 E-value=2.8e+02 Score=33.47 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=20.8
Q ss_pred CcccCCCCccCCCCCCCCCCcc-chhhhhhccccccccCC
Q 014327 97 ISFDSDLGVVGGADGPSLSDET-EEDLLSMYLDMDKFNAS 135 (426)
Q Consensus 97 ~~~~~~~~~~g~~~~~~~~~~~-~~dlfs~y~d~~~~~s~ 135 (426)
+-|..||. |.+.+.. .+.||.++||++.|+.+
T Consensus 564 LL~r~dL~-------P~l~~~~~~dslyGl~LdL~~I~~p 596 (1201)
T PF12128_consen 564 LLYRTDLE-------PQLVEDSGSDSLYGLSLDLSAIDVP 596 (1201)
T ss_pred HhcCCCCC-------CeecCCCcccccceeEeehhhcCCc
Confidence 44555664 3333333 45799999999998753
No 366
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=44.67 E-value=64 Score=24.29 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=14.9
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+..|...+..|..+|..|..++..|+
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566666666555554
No 367
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=44.53 E-value=4.4e+02 Score=32.49 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
.|+.+++.+..|...|..|+..
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~ 1033 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILE 1033 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544433
No 368
>smart00340 HALZ homeobox associated leucin zipper.
Probab=44.45 E-value=44 Score=25.02 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=16.9
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 274 TLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 274 ~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
..|.+-+..|+.||+.|+.+++.|.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778877777665554
No 369
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.17 E-value=3.2e+02 Score=31.06 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=64.6
Q ss_pred ccHHHHhhhhhcChHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 014327 215 MSAAKLAELALIDPKRAKRIWANRQSAARSKE---------RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTA 285 (426)
Q Consensus 215 ~~~~~l~ela~~DpKR~KRil~NReSA~RSRe---------RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~s 285 (426)
...+.|++.-.....|+||-|++-.--+--+. .=+..+..++..|..+...+.+|..+++.-......|..
T Consensus 34 ~aL~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~ 113 (655)
T KOG3758|consen 34 AALRALSTFFEENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQ 113 (655)
T ss_pred HHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 34445555554455677776665433222211 112334455567777778888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 286 ENSELKLRLQTMEQQVHLQDALNDAL 311 (426)
Q Consensus 286 EN~eLK~rLqaLeQQ~qLrdALnEaL 311 (426)
+-..|+.+.+.++.++++.++..+..
T Consensus 114 ~t~~l~~e~~~le~r~kii~~Fl~~f 139 (655)
T KOG3758|consen 114 KTETLKEEAAQLELRKKIINAFLDNF 139 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889999999999988887776543
No 370
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=44.12 E-value=1.3e+02 Score=31.33 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD------------------------ALNDALKEE 314 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd------------------------ALnEaLk~E 314 (426)
|..|+..|..|..++...+.++..|..-|++--.+++.|.+-+.-.+ -....|..|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777666665555555544433211 112347788
Q ss_pred HHHHHhhhccCCC
Q 014327 315 IQHLKVLTGQAMP 327 (426)
Q Consensus 315 VqrLRvaaGq~~~ 327 (426)
+.|.|+.+..+..
T Consensus 82 LARaKV~aNRVA~ 94 (351)
T PF07058_consen 82 LARAKVSANRVAT 94 (351)
T ss_pred HHHhhhhhhhhhh
Confidence 8888887766653
No 371
>PF14645 Chibby: Chibby family
Probab=44.03 E-value=75 Score=28.17 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
.|..+.+.|+.||+-|+-++..|-.=
T Consensus 75 ~l~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 75 RLRKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554433
No 372
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=43.82 E-value=2.6e+02 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 014327 282 GLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQ 299 (426)
.|+.+|.+|..+|..|..
T Consensus 78 eLE~~k~~L~qqv~~L~~ 95 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKE 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 373
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=43.79 E-value=3.4e+02 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
++.++++|+.++..|..++..+...
T Consensus 190 ~~~~~k~le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 190 ATTEWKVLEDKKKELELKIAQLKKK 214 (259)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4555555555555555555554433
No 374
>PHA03155 hypothetical protein; Provisional
Probab=43.55 E-value=30 Score=30.86 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
-+++|+.++..|+.||..|..++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999988743
No 375
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=43.27 E-value=2.3e+02 Score=32.92 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=8.6
Q ss_pred CCCCCCCccccCcc
Q 014327 77 PPKNVGHRRAHSEI 90 (426)
Q Consensus 77 p~R~~gHRRa~Se~ 90 (426)
|.|-++.=-.||||
T Consensus 169 pQ~p~~p~~v~SeV 182 (861)
T PF15254_consen 169 PQQPACPPVVHSEV 182 (861)
T ss_pred CCCCCCCccccccc
Confidence 44445555578887
No 376
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=43.14 E-value=1e+02 Score=26.71 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+|.+.++..+.|..-|+..++.+
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~el 27 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSEL 27 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444443
No 377
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=42.99 E-value=1.8e+02 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.....|+........+|..|+.++..|.+++.
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555554
No 378
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=42.98 E-value=3.1e+02 Score=31.80 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.+..|| +.+.|..|...+.+++..++.....|...+..|+..+..|+
T Consensus 211 rmaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 211 RMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444 33456666677777777777777777777777777777666
No 379
>PLN02320 seryl-tRNA synthetase
Probab=42.63 E-value=2.2e+02 Score=31.35 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
+|..|-.+...+..++..|+.+...+..+
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~ 122 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANK 122 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555554444
No 380
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=42.41 E-value=3.4e+02 Score=31.34 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
-..|++|+.+...++.+...+......+.+....|+.+-.+|+.
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444444444444444444444444443333
No 381
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=42.35 E-value=2.9e+02 Score=25.80 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+|..|+.+|..|...+..+..+...|.....+|+..+
T Consensus 97 ~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~ 133 (158)
T PF09744_consen 97 QVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEY 133 (158)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHH
Confidence 3333333443333333333333333333333444333
No 382
>PRK15396 murein lipoprotein; Provisional
Probab=42.02 E-value=1.8e+02 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNG 282 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~ 282 (426)
+.|...|+.|..+...|...+..++.+...
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 383
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=41.68 E-value=86 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.415 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
+..|+..+.+++.||..|+..+..+.+....|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999998888887766444
No 384
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.64 E-value=2.9e+02 Score=25.50 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNG 329 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~~g 329 (426)
..|+|=...+..|......-...++-+......+..++..++..|........-.+.....++.+...++.....+...+
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred CCCCC
Q 014327 330 GPMMN 334 (426)
Q Consensus 330 g~mmN 334 (426)
+.+..
T Consensus 136 ~~~~~ 140 (177)
T PF13870_consen 136 GLLGV 140 (177)
T ss_pred CCCCC
No 385
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=41.48 E-value=1.7e+02 Score=23.23 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQ-RDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lq-rq~~~L~sEN~eLK~rLqaLe 298 (426)
.|.++|..+.........|..++..+. .....+....+.++..+..|.
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333331 222333334444444444443
No 386
>PF14645 Chibby: Chibby family
Probab=41.46 E-value=82 Score=27.93 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 014327 284 TAENSELKLRL 294 (426)
Q Consensus 284 ~sEN~eLK~rL 294 (426)
..||+.||.++
T Consensus 84 ~EENN~Lklk~ 94 (116)
T PF14645_consen 84 EEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 387
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=41.40 E-value=71 Score=34.55 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
+|-.+|..|..+|..|..++..+.-.+..|..||+-|+.-
T Consensus 47 ~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~A 86 (552)
T KOG2129|consen 47 SLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLA 86 (552)
T ss_pred HHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhh
Confidence 5555666666666667777777777777777777766543
No 388
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=41.25 E-value=2.3e+02 Score=27.18 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHL 303 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qL 303 (426)
|.=.|+++..|+.+|..|+.++..|.. ...+|..+-.++..+.-.+.-
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL~ 89 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALLA 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 456688888888888888888887654 456788888888777766543
No 389
>PHA03162 hypothetical protein; Provisional
Probab=41.06 E-value=34 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~ 274 (426)
|..-+++|+.++..|+.||..|..+|.
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999998883
No 390
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=40.95 E-value=1.9e+02 Score=30.31 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=13.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 278 RDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 278 rq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.....|..||.+|+.++..|+.++.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~ 81 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555444
No 391
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.90 E-value=3.7e+02 Score=31.62 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
-.+++|..++.+|+.|+..|..+++........|..++.-||.+|.
T Consensus 671 ~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 671 YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666677777777777777666666666666666666664
No 392
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=40.82 E-value=1.9e+02 Score=27.59 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+|++||.+-+.+...++.+...|..++...
T Consensus 143 ~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 143 IRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555443
No 393
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.82 E-value=3.5e+02 Score=30.06 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
..+.|...+..|+..|..++....+....+..|+.+++.++..|+.++.
T Consensus 431 ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 431 HADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666555554443
No 394
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=40.74 E-value=31 Score=25.76 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 232 KRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQL 273 (426)
Q Consensus 232 KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 273 (426)
+++..||+=|+..-....+ |.+||.++..|-.||..|+.++
T Consensus 4 k~~~qn~~laK~Ns~l~~k-i~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALSIK-IQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHhH-HHHHHhHHHHHHHHHHHHHHHh
Confidence 4445555555555444443 6677777777777777766554
No 395
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.74 E-value=3.1e+02 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=12.6
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHH
Q 014327 275 LLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 275 ~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.++..+..|..|......+|..+
T Consensus 120 emQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444
No 396
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.68 E-value=4e+02 Score=32.54 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 243 RSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALK 312 (426)
Q Consensus 243 RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk 312 (426)
.+..+++.-+..|+..+..+..|....++.+..+......|......++.++..+.........-+++|.
T Consensus 535 ~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~ 604 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLD 604 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3344455555555555555555555555555555555555555555555555555544443334444443
No 397
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=40.61 E-value=5.3e+02 Score=29.05 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
||++...+|..|+...+....++..+..++..++..
T Consensus 38 ~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~q 73 (701)
T PF09763_consen 38 YLDEALAECDELESWLSLYDVELNSVRDDIEYIESQ 73 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444333333
No 398
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=40.61 E-value=4e+02 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.406 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
++-...+..|+..|..|.+++.....+|..|
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555554444
No 399
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=40.21 E-value=2.6e+02 Score=30.27 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014327 299 QQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 299 QQ~qLrdALnEaLk~EVqrLRv 320 (426)
+.|.-..+|-.+|.+|.+.||.
T Consensus 439 QKCLEnahLaqalEaerqaLRq 460 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQ 460 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555556666555554
No 400
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=40.15 E-value=4.3e+02 Score=27.72 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
..+.+.|+.+...+.+++..+......+
T Consensus 150 ~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 150 QKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 401
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.06 E-value=2.5e+02 Score=27.43 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 269 LSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 269 Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
...+...|+.....|..|+..|+..+..
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3333344444444444445555444433
No 402
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=40.06 E-value=2.1e+02 Score=25.80 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
++..++..|+........++..+.+
T Consensus 55 ~i~~~l~~L~~~~~~~~~rl~~~r~ 79 (141)
T PF13874_consen 55 EINDKLEELQKHDLETSARLEEARR 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444443333333333333333
No 403
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.02 E-value=3.1e+02 Score=27.97 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
.-|+.|+.|.+.....+.|.-.-..|..||.++..++.++....++|+.+.++
T Consensus 142 p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 142 PSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34556666666665554444444466777777777777777777777777665
No 404
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.01 E-value=6.5e+02 Score=29.14 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 014327 263 QTEATSLSAQLTLLQRDTNGLTAEN-------SELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMP 327 (426)
Q Consensus 263 q~ENs~Ls~ql~~Lqrq~~~L~sEN-------~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~ 327 (426)
+.+...|..+...|......|++.. .....+...|..++-....-.++...-|.+||..+|+.-+
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p 232 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVP 232 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCC
Confidence 3444445555555544444444433 3333333344444433333344455558889999988664
No 405
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=39.79 E-value=4.7e+02 Score=27.50 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhhc
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH--------------LQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q--------------LrdALnEaLk~EVqrLRvaaG 323 (426)
+...++.+.+.+..+...+...+..++.+..+|..+|+.+.++.. ++.|+ ..|+.||..|-+-.|
T Consensus 274 eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl-~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 274 EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL-TKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HHHHHHHHHhhhhhh
Confidence 333444444444455555555555555555555555555554433 22222 346677766655554
Q ss_pred c
Q 014327 324 Q 324 (426)
Q Consensus 324 q 324 (426)
-
T Consensus 353 V 353 (359)
T PF10498_consen 353 V 353 (359)
T ss_pred e
Confidence 4
No 406
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.68 E-value=3.8e+02 Score=29.41 Aligned_cols=96 Identities=18% Similarity=0.325 Sum_probs=49.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMR-YIAELERKVQTLQTEATSLS---AQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkq-yieeLE~kVq~Lq~ENs~Ls---~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
.||.++-. +.+|.+.-+...||.. -+++|-...+.++.+...|. ..+..|+.+...+..+-..+-..|...+..
T Consensus 298 ~dp~~L~e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~- 375 (563)
T TIGR00634 298 FDPERLNE-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK- 375 (563)
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46777665 4567666666655543 34444444444444444333 234444444444444444444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 014327 302 HLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 302 qLrdALnEaLk~EVqrLRvaaGq 324 (426)
....+.+.+..++..|.+..+.
T Consensus 376 -~a~~l~~~v~~~l~~L~m~~~~ 397 (563)
T TIGR00634 376 -AAERLAKRVEQELKALAMEKAE 397 (563)
T ss_pred -HHHHHHHHHHHHHHhCCCCCcE
Confidence 2345667777777777665433
No 407
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=39.62 E-value=34 Score=40.24 Aligned_cols=34 Identities=29% Similarity=0.159 Sum_probs=17.1
Q ss_pred CCCCchhHhhhccHHHHhhhhhcChHHHHHHHHH
Q 014327 204 DEAPSADSKKAMSAAKLAELALIDPKRAKRIWAN 237 (426)
Q Consensus 204 ~~~~~~~~kk~~~~~~l~ela~~DpKR~KRil~N 237 (426)
++..+++--.-++..+|+++-..-..++||-..-
T Consensus 796 S~~rsd~~~~Pl~p~~~akl~~~~~~kak~aa~~ 829 (1229)
T KOG2133|consen 796 SCARSDLYFEPLSPSKLAKLRSNVEEKAKRAAEQ 829 (1229)
T ss_pred cccccccccCCCCcccccccccchHHHHHHHHHH
Confidence 4444444444566666666643334555554433
No 408
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=39.59 E-value=3.6e+02 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
..|+.||..+++|+........++..++
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq 95 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQ 95 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333333
No 409
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.18 E-value=3e+02 Score=28.35 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSE 289 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~e 289 (426)
+.|.-+|..|...+..|+....+
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~ 130 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQ 130 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 410
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.04 E-value=6e+02 Score=29.62 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 284 TAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 284 ~sEN~eLK~rLqaLeQQ~q 302 (426)
..|+..|..++..|+.++.
T Consensus 672 e~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELE 690 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 411
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=39.01 E-value=1.3e+02 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=23.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALND 309 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnE 309 (426)
-+.+..++...|..+|++|+.+++.|-..+.-.+.+.+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~ 78 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQ 78 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777777666655554433
No 412
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.99 E-value=3.7e+02 Score=26.03 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014327 258 KVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
+...|++|...|..++..++..
T Consensus 151 ~~~~l~ae~~~l~~~~~~le~e 172 (240)
T PF12795_consen 151 QRWLLQAELAALEAQIEMLEQE 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 413
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=38.97 E-value=1.7e+02 Score=30.72 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~ 274 (426)
.|++.|+.++..|+.+...|..++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554443
No 414
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.95 E-value=1.5e+02 Score=30.21 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 297 MEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 297 LeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
|.+++.-.+-..+.|+++...+..+.+.
T Consensus 283 LQq~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 283 LQQKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444555566677777767666654
No 415
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.82 E-value=2.4e+02 Score=23.83 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 232 KRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 232 KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
.++-..+......=..|..-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555666667777888899999999999999999999999999999999999988765
No 416
>PRK10698 phage shock protein PspA; Provisional
Probab=38.72 E-value=3.8e+02 Score=26.08 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 260 QTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 260 q~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
..|+.+.......+..|...+..|.....+++.+-
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444333333333333333333
No 417
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.43 E-value=4e+02 Score=30.81 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
..|+.||.+...++.+...+...+..+.+....|+.+-.+|+
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333333333333
No 418
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.32 E-value=5.3e+02 Score=29.88 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELE 256 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE 256 (426)
..++-++|..-+.-++.=+.++..++.+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~ 543 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALL 543 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333333333
No 419
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.23 E-value=1.2e+02 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+.+.+++.+++.|+.+|..|..++..|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444
No 420
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=38.16 E-value=98 Score=26.31 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhh
Q 014327 284 TAENSELKLRLQTMEQQVH------LQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 284 ~sEN~eLK~rLqaLeQQ~q------LrdALnEaLk~EVqrLRvaa 322 (426)
..||..|+.+|+.|..++- -....|-.|.+++.+|+...
T Consensus 23 ~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 23 EEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544322 12244677778888777665
No 421
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=38.12 E-value=4.8e+02 Score=27.37 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSE 289 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~e 289 (426)
+..|..++..|+.+|..|...+..+..++..+..+..+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~ 176 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEE 176 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444
No 422
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=38.07 E-value=3.1e+02 Score=24.84 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
-|++|+..+-.....|+.++..+......+..+...++..+..++.....+|...++-..|..........
T Consensus 34 ~L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ak~~em~ef~~~~~~ 104 (121)
T PF12507_consen 34 LLERKIADQNFKILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEAKRKEMKEFQPMVER 104 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhhhhcchHHHHHHhhc
Confidence 56778877777778888888888888888888888889888888888888888888877777666554433
No 423
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.96 E-value=2.1e+02 Score=22.82 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014327 309 DALKEEIQHL 318 (426)
Q Consensus 309 EaLk~EVqrL 318 (426)
..|..+|..|
T Consensus 42 ~eL~~ei~~L 51 (61)
T PF08826_consen 42 RELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 424
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.95 E-value=2.2e+02 Score=24.78 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=9.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKM 249 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKk 249 (426)
|...+...+.|-.-|.-..+.+.
T Consensus 28 Di~~Lq~~i~~vtf~~l~~e~~~ 50 (118)
T PF13815_consen 28 DIDTLQENIENVTFCDLENEDCQ 50 (118)
T ss_pred CHHHHHHHHHhcceeccChhhcc
Confidence 33334444444433444444333
No 425
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=37.88 E-value=7.7e+02 Score=29.91 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSA 271 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ 271 (426)
..++.++..++.+...+..
T Consensus 681 ~~~~~~l~~l~~~l~~~~~ 699 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQ 699 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444443333333
No 426
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.84 E-value=4.3e+02 Score=29.90 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
.+.|.+++.+.+.++.-...|..++.........|
T Consensus 601 lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L 635 (741)
T KOG4460|consen 601 LQDLSYCREERKSLREMAERLADRYEEAKEKQEDL 635 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444444444444444444443333333
No 427
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=37.69 E-value=4.3e+02 Score=28.83 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHhhhhhcChH-HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 219 KLAELALIDPK-RAKRIWANRQSAARSKERKMRY-----------IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 219 ~l~ela~~DpK-R~KRil~NReSA~RSReRKkqy-----------ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
...+.++.+=| |+.|++...+.-..+=..+.-. +++|......++.|+..|..++..+..+...++.+
T Consensus 231 ~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 231 ESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 014327 287 ----NSELKLRLQTMEQQVHLQ---DALNDALKEEIQHLK 319 (426)
Q Consensus 287 ----N~eLK~rLqaLeQQ~qLr---dALnEaLk~EVqrLR 319 (426)
...++..++.++...... ++....+..|+.+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ 350 (511)
T PF09787_consen 311 LEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYR 350 (511)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
No 428
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=37.66 E-value=2.5e+02 Score=32.67 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
..|..+++.+..+...|..-+..|+...-.|.
T Consensus 95 ~dle~~l~klE~el~eln~n~~~L~~n~~eL~ 126 (829)
T KOG2189|consen 95 IDLEEQLEKLESELRELNANKEALKANYNELL 126 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 429
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=37.42 E-value=1.2e+02 Score=25.70 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
+..=+..|+.++..++.+...|..++..+......+..+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666555554444444333
No 430
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=37.42 E-value=4.4e+02 Score=30.74 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.++..++.+...+..|...|+..+...+
T Consensus 364 ~~~~~~qeE~~~~~~Ei~~l~d~~d~~e 391 (775)
T PF10174_consen 364 AQIEKLQEEKSRLQGEIEDLRDMLDKKE 391 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 431
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.22 E-value=5.6e+02 Score=28.78 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=57.5
Q ss_pred HhhhhhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 220 LAELALIDPKRAKRIWANRQSAARSKERKMRY-IAELERKVQTLQTEATSLSA---QLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 220 l~ela~~DpKR~KRil~NReSA~RSReRKkqy-ieeLE~kVq~Lq~ENs~Ls~---ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
+.++. .||.|+-.+. .|..+.+.=.||-.- +++|=.....++.|...|.. .+..|..+...+..+-.++-..|.
T Consensus 289 ~~~le-~Dp~~L~~ve-~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 289 LDELE-FDPNRLEEVE-ERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HhcCC-CCHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 5788887754 666666666666544 55555555555555544442 233334444444444433333343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 296 TMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 296 aLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
..+++ ....|...+..|+..|.+..+.+.
T Consensus 367 ~~R~~--~A~~L~~~v~~eL~~L~Me~a~F~ 395 (557)
T COG0497 367 AIRKK--AAKELEKEVTAELKALAMEKARFT 395 (557)
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCCceEE
Confidence 33332 335677888899999988766643
No 432
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.94 E-value=1.7e+02 Score=35.62 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
..|..|+++...|..--++|++++..|.
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666666666666655443
No 433
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.93 E-value=7.2e+02 Score=30.27 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 262 LQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 262 Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+-..|..|+.++..+.+....|..+|...+..+..+.+...
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~ 303 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALN 303 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777777777777777777777777666655543
No 434
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=36.89 E-value=2.2e+02 Score=24.18 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
..|..-+..|+..|..|..+|. .|...|++.+.+++
T Consensus 36 D~Lns~LD~LE~rnD~l~~~L~-------~LLesnrq~R~e~~ 71 (83)
T PF03670_consen 36 DQLNSCLDHLEQRNDHLHAQLQ-------ELLESNRQIRLEFQ 71 (83)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3344444444444444444433 45556666665543
No 435
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=36.39 E-value=1.4e+02 Score=30.37 Aligned_cols=50 Identities=28% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTL-------LQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~-------Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
..+.++|.+|+.|+.-|..|.++|+. +...-..+..|...+.++|..|+.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 34679999999999999999999832 233344556666667777766653
No 436
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.36 E-value=5.7e+02 Score=29.08 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 276 LQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 276 Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
...++..|+.++..++..|..|..++.-+ ..++.++.|+--||..
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHh
Confidence 34555666666666666666666666544 6678888888777653
No 437
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=36.23 E-value=3.9e+02 Score=25.43 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=9.7
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q 014327 279 DTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 279 q~~~L~sEN~eLK~rLqaL 297 (426)
++..|..||++|+.-|...
T Consensus 71 qi~~Lq~EN~eL~~~leEh 89 (181)
T PF05769_consen 71 QIRQLQQENRELRQSLEEH 89 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666655544333
No 438
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.08 E-value=3.4e+02 Score=26.71 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDA 310 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEa 310 (426)
...+..||..+..++.+...+...+..|+..+..|.....+++.+...+........+....
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v 152 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKV 152 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.02 E-value=4.3e+02 Score=25.92 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+..||..+..|..+...|..+.+........+...-.....+...|...
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~ 95 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQF 95 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555656655556665555555555544444444444444444433
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=36.00 E-value=7.3e+02 Score=28.60 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhcc
Q 014327 308 NDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 308 nEaLk~EVqrLRvaaGq 324 (426)
...+..++..|+.+.+.
T Consensus 432 i~~l~~~~~el~~~~~~ 448 (895)
T PRK01156 432 IRALRENLDELSRNMEM 448 (895)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455566667766554
No 441
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.49 E-value=7.2e+02 Score=30.68 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 242 ARSKERKMRYIAELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 242 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
.+....-..++++++..+...+.+...+..++..
T Consensus 874 ~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~ 907 (1353)
T TIGR02680 874 ATRAAEQRARAARAESDAREAAEDAAEARAEAEE 907 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433333
No 442
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=35.39 E-value=2.3e+02 Score=32.37 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
-=+++.--+.+||.+.-.|.+|++.|+-+++.|.++.
T Consensus 161 mLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 161 MLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 3355666668999999999999999998888887654
No 443
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.36 E-value=97 Score=32.57 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 260 QTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 260 q~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
-.|+.||..|++++..|..+...|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 345556666655555555555555
No 444
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=35.33 E-value=3.7e+02 Score=26.63 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+.|+.||++||..+..|..-...|..+-..|
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eL 55 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHRKEL 55 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999998888777776554333
No 445
>PRK14011 prefoldin subunit alpha; Provisional
Probab=35.04 E-value=2e+02 Score=26.48 Aligned_cols=6 Identities=33% Similarity=0.086 Sum_probs=2.8
Q ss_pred cCCCCC
Q 014327 201 SASDEA 206 (426)
Q Consensus 201 ~~~~~~ 206 (426)
.|.+.|
T Consensus 76 IGtGy~ 81 (144)
T PRK14011 76 VGSDIY 81 (144)
T ss_pred ccCCeE
Confidence 455444
No 446
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.94 E-value=1.7e+02 Score=25.72 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 234 IWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 234 il~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
+=.||++++..+.-...|-..|..+ .|+..|..++..+..+.
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~ae-----~ei~~l~~~l~~l~~~~ 96 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKAE-----QEIERLHRKLDALREKL 96 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHh
Confidence 3457776664333333443333222 23344444444444433
No 447
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=34.59 E-value=2.5e+02 Score=22.78 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLT-----AENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~-----sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
+....-+.+....+.........|...+..+...+.... .+-..+...+..|...........+.+..++..++.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh
Q 014327 321 LT 322 (426)
Q Consensus 321 aa 322 (426)
..
T Consensus 81 ~l 82 (123)
T PF02050_consen 81 EL 82 (123)
T ss_dssp HH
T ss_pred HH
No 448
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=34.59 E-value=4.6e+02 Score=28.56 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALn 308 (426)
+.+|-.+++.+..-...+..-|...+.+...+..|-..|+.+-..|..++.-+....
T Consensus 16 ~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~ 72 (508)
T PF04129_consen 16 FADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVE 72 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333444444444444444444444444444444444444444444444444333333
No 449
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.51 E-value=2.2e+02 Score=22.67 Aligned_cols=42 Identities=12% Similarity=0.269 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 257 RKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 257 ~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.++..++.....+...+..+.+....+...-..+..+|..++
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444443333333333334444444433
No 450
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=34.46 E-value=2.3e+02 Score=28.62 Aligned_cols=39 Identities=38% Similarity=0.425 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 282 GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
.+..||..||.++..+.+.+. ..+.|++|..+||...+.
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 70 DLALENEELKKELAELEQLLE----EVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC
Confidence 344556666666555544332 334555566666655544
No 451
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=34.23 E-value=3.3e+02 Score=24.81 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=21.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 277 QRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEE 314 (426)
Q Consensus 277 qrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~E 314 (426)
...+..|..||.-||.-|-.|+.-..-.....+.|+.+
T Consensus 84 dETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~q 121 (126)
T PF13118_consen 84 DETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455677788888877766654333333333444443
No 452
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=33.92 E-value=88 Score=31.06 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.|++.||..|+.+..+.+ ..+..|..||..|+.+|+.|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~--------------~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQ--------------QDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 467788888887775544 344455567777777777665
No 453
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=33.87 E-value=6.7e+02 Score=27.49 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
.+.............+..|+.....|..|....|..+..+.+......+....|..++.+++.-.
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33333333344444455555555566666666666666666666655565666666666555443
No 454
>PRK11281 hypothetical protein; Provisional
Probab=33.79 E-value=3.5e+02 Score=32.75 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=22.8
Q ss_pred cChHHHH-HHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 226 IDPKRAK-RIWANRQSAARSKERKMRYIAE---L-ERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 226 ~DpKR~K-Ril~NReSA~RSReRKkqyiee---L-E~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
+-|.|+. |+-.||.-.+.-+.+...-... | +.+...|++|...|..++..+++..
T Consensus 156 T~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 156 TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 3355554444444333221000 0 2334444455555554444444433
No 455
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=33.69 E-value=7.3e+02 Score=27.87 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQ 260 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq 260 (426)
||+--+++.-.-|...|.||++.-.|.|.|-.
T Consensus 392 kraallekqqrraeear~rkqqleae~e~kre 423 (708)
T KOG3654|consen 392 KRAALLEKQQRRAEEARRRKQQLEAEKEQKRE 423 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333377888888876555555543
No 456
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.63 E-value=2.7e+02 Score=22.78 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
..|...++...++...|...+..|..++..|..
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444443
No 457
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.40 E-value=1.3e+02 Score=23.80 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
++||+.+|..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777665543
No 458
>PLN02678 seryl-tRNA synthetase
Probab=33.39 E-value=2.5e+02 Score=30.40 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQ---RDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lq---rq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
+|..++..|+.+.+.+++++..+. .....|..+-++|+.++..++.++. .+.+.+.+.+-.|.-....
T Consensus 44 ~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~---~~~~~l~~~~~~iPNi~~~ 114 (448)
T PLN02678 44 QRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQ---EAKAALDAKLKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCc
Confidence 344555666666666666665432 3445677778888888888876655 3444455566666655444
No 459
>PHA03011 hypothetical protein; Provisional
Probab=33.31 E-value=3e+02 Score=24.34 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
..+...+..|..+...|..|-.-+...+..++.-.+-.+-..--|++|+.+||
T Consensus 60 Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK 112 (120)
T PHA03011 60 NAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLK 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
No 460
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=33.03 E-value=42 Score=33.25 Aligned_cols=30 Identities=43% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHH
Q 014327 366 HSQKQQQQFQQHQLHQMQQQQLQQQQQEQQ 395 (426)
Q Consensus 366 ~~q~qqqqqqqqqqqqqqqqqqqqqqqqqq 395 (426)
..|.||+|||..+-|.||=-|.||+|+++.
T Consensus 4 ~EQyQqHQqQL~~MQkQQLaqiqqqQ~~~~ 33 (230)
T PF06752_consen 4 AEQYQQHQQQLVLMQKQQLAQIQQQQQQQN 33 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 461
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=32.88 E-value=21 Score=43.16 Aligned_cols=31 Identities=52% Similarity=0.432 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhh---------------------hhHHHHHHHHHHHHhhhh
Q 014327 370 QQQQFQQHQLHQM---------------------QQQQLQQQQQEQQQQTGE 400 (426)
Q Consensus 370 qqqqqqqqqqqqq---------------------qqqqqqqqqqqqqqq~~~ 400 (426)
|||||||+|||.. |+|||||.--|||||+-+
T Consensus 324 ~~~Q~q~qqq~~~~~~L~~~~s~~~~~D~~~~~Rq~q~qq~H~~~qq~QH~q 375 (1973)
T KOG4407|consen 324 QQQQQQQQQQQHRHPALTGGSSSIDFGDMAHGLRQHQQQQQHLYQQQQQHHQ 375 (1973)
T ss_pred hhhhhhhhhhcCCCcccccCCCcccccchhhhhHHHHHhccccchhHHHHHH
No 462
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.83 E-value=5.5e+02 Score=30.93 Aligned_cols=94 Identities=22% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 215 MSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 215 ~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
...+++........+..|-.+.+|.+-.| +||.+++.+..++..+..++..+.+....+..+...++.+.
T Consensus 625 ~~l~~~~~~~ee~~~~~~~~~~~~~~~~r----------~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~ 694 (1072)
T KOG0979|consen 625 PVLEELDNRIEEEIQKLKAEIDIRSSTLR----------ELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRK 694 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 295 QTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 295 qaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
..++..+-..+.+.+.+...+..+
T Consensus 695 ~~ie~~~~~l~~qkee~~~~~~~~ 718 (1072)
T KOG0979|consen 695 ERIENLVVDLDRQEEEYAASEAKK 718 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 463
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.54 E-value=1.4e+02 Score=24.45 Aligned_cols=50 Identities=30% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQQVH-LQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q-LrdALnEaLk~EVqrLRvaa 322 (426)
+......+..|..||=-||.+|-.|+..+. ..+.-.+.+-++...|++..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~ 52 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEV 52 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
No 464
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.39 E-value=2.5e+02 Score=24.53 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
|+=|-.--+.|...+..|..++..+..++..|..++..++.++..|..++.
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 465
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=32.37 E-value=7.7e+02 Score=30.40 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 014327 225 LIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLS-AQLTLLQRDTNGLTAENSELKLRLQTMEQQVHL 303 (426)
Q Consensus 225 ~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls-~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qL 303 (426)
+.+.-..++.+.++..|.. .+..-+.+|+..+..++.+..+|. .+..+++..+......-.+++.++..++.++.-
T Consensus 443 l~~~~~~~~~~~~~~~~~~---~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA---ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 014327 304 QDALNDALKEEIQHLK 319 (426)
Q Consensus 304 rdALnEaLk~EVqrLR 319 (426)
..-..+.+++....++
T Consensus 520 ~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 520 LEEELEDAQKKNDNAA 535 (1317)
T ss_pred HHHHHHHHHHHHHHHH
No 466
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.31 E-value=2.4e+02 Score=27.60 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
|+..+++||.+=.+|+.+-..-..+...|.. |..+..+++.++..|..|+. .+.....|-.+|.++-...|
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~~----lr~Ql~emee~~~~llrQLP-s~tEmp~Ll~dv~q~Gl~sg 117 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLEA----LRAQLAEMEERFDILLRQLP-SDTEMPNLLADVNQAGLSSG 117 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHhCC-cccchhHHHHHHHHhhhccC
No 467
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=32.30 E-value=4.6e+02 Score=25.18 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH---------------------H
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD---------------------A 306 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd---------------------A 306 (426)
|+.-++.||..|.+.+.-+......|..-+.............+.++..|..-+..-. .
T Consensus 65 Kq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~q 144 (188)
T PF05335_consen 65 KQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQ 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhh
Q 014327 307 LNDALKEEIQHLKVLT 322 (426)
Q Consensus 307 LnEaLk~EVqrLRvaa 322 (426)
|.+..+..|..|....
T Consensus 145 LLeaAk~Rve~L~~QL 160 (188)
T PF05335_consen 145 LLEAAKRRVEELQRQL 160 (188)
T ss_pred HHHHHHHHHHHHHHHH
No 468
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=32.18 E-value=3.8e+02 Score=24.20 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
+..++..|+.....|+.++..|.............+..+...|+.....+..+ ....++.|+.-|-+..+
T Consensus 25 ~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E------~~~~~q~EldDLL~ll~ 94 (136)
T PF04871_consen 25 KSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE------ARKEAQSELDDLLVLLG 94 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhhHHHHHHHHH
No 469
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.16 E-value=6.5e+02 Score=26.82 Aligned_cols=109 Identities=25% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 245 KERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
|.-|..-+.|-|-++-.-+.|...|. -......|...+..-.++.+|.+|||...-..........
T Consensus 129 k~~kde~lkE~e~r~~ee~~e~~~lQ------------e~~qr~l~ee~~~~E~Qr~Qiq~ALN~QT~~QF~~YA~~Q-- 194 (469)
T KOG3878|consen 129 KQDKDETLKEKELRLMEEKKEARELQ------------ENAQRELLEEGYKEELQRRQIQDALNKQTYQQFKLYAEKQ-- 194 (469)
T ss_pred hhhhhhHHHHHHHHHHHhhhcchhHH------------HHHHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh--
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHH
Q 014327 325 AMPNGGPMMNYPSFGAGQQFYPNNQAMHTLLTAQQFQQLQIHSQKQQQQFQQHQLHQMQQQQLQQQQQE 393 (426)
Q Consensus 325 ~~~~gg~mmN~~Sfg~~qQ~~~~sQ~m~q~~~qQQ~QQ~Q~~~q~qqqqqqqqqqqqqqqqqqqqqqqq 393 (426)
++-..-+|+.--.|++.|..||=+||--++++.|+|.--|.++
T Consensus 195 --------------------------fPGnpEQQ~vLIrQLQeqHYqQYMqQly~~~~aQ~q~~~Q~~~ 237 (469)
T KOG3878|consen 195 --------------------------FPGNPEQQAVLIRQLQEQHYQQYMQQLYLQNQAQNQNGHQEAE 237 (469)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
No 470
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.98 E-value=7.3e+02 Score=27.37 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCCchhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 014327 202 ASDEAPSADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQ--------- 272 (426)
Q Consensus 202 ~~~~~~~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~q--------- 272 (426)
+..+....+.+-.--.+++..|-. .+.+-+.-|..+.+...+=..++..++.....|..|...|...
T Consensus 273 ~~l~l~~~~~~~~~i~~~Id~Lyd----~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~ 348 (569)
T PRK04778 273 EELDLDEAEEKNEEIQERIDQLYD----ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELE 348 (569)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHH
Q ss_pred -HHHHHHhHHhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 273 -LTLLQRDTNGLTAENS--------------ELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 273 -l~~Lqrq~~~L~sEN~--------------eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
+..+..+...|..... +++.++..+..++.........+.+.+..|+.
T Consensus 349 ~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 349 SVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.89 E-value=2.8e+02 Score=29.47 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLL------------QRDTNGLTAENS-ELKLRLQTMEQQVHLQDALNDALKEE 314 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~L------------qrq~~~L~sEN~-eLK~rLqaLeQQ~qLrdALnEaLk~E 314 (426)
|...+.+|+.++..|+.+...+..++..+ +.+...+..+.. .+..++...+.++...++..+.++..
T Consensus 234 ~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 234 KSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhh
Q 014327 315 IQHLKVLT 322 (426)
Q Consensus 315 VqrLRvaa 322 (426)
+.+..+.+
T Consensus 314 l~~~~I~A 321 (457)
T TIGR01000 314 SQKGVIKA 321 (457)
T ss_pred HhCCEEEC
No 472
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.67 E-value=7.3e+02 Score=27.39 Aligned_cols=91 Identities=10% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHhHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD----------TNGLTAENSELKLRLQTME 298 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq----------~~~L~sEN~eLK~rLqaLe 298 (426)
+++--+...=+.....|..=...+..++..+..++..|..|..++..+... ...+..+...|..++..+.
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014327 299 QQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 299 QQ~qLrdALnEaLk~EVqrLR 319 (426)
..+.........+.+++..|.
T Consensus 369 ~~i~~~~~~ysel~e~leel~ 389 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEIL 389 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHH
No 473
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=31.63 E-value=1.7e+02 Score=28.25 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 234 IWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 234 il~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
|++-|.++..-|.+-+.|...||.+=..|.....-...+|..|.+.+..+
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.61 E-value=4.2e+02 Score=24.51 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNG 329 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~~g 329 (426)
+-...++.-++....+...|+.++-.-+.+...|..-+.-=..+|.+|..+.. .|...|.++.-.+++......-+.
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~---~Lr~kL~e~r~~~~~~~~k~Gv~~ 123 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEME---NLRQSLDELRVKRDIAMAEAGIPR 123 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCc
Q ss_pred CCCCCCCCCCCCCcccC
Q 014327 330 GPMMNYPSFGAGQQFYP 346 (426)
Q Consensus 330 g~mmN~~Sfg~~qQ~~~ 346 (426)
+-.|......++.+|-|
T Consensus 124 g~~~g~~g~~gg~~~gm 140 (143)
T PRK11546 124 GAGMGYGGCGGGGHMGM 140 (143)
T ss_pred ccccCcCCCCCCCCCCC
No 475
>PF10477 EIF4E-T: Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E; InterPro: IPR018862 EIF4E-T is the transporter protein for shuttling the mRNA cap-binding protein EIF4E protein, targeting it for nuclear import. EIF4E-T contains several key binding domains including two functional leucine-rich NESs (nuclear export signals) between residues 438-447 and 613-638 in the human protein. The other two binding domains are an EIF4E-binding site, between residues 27-42 in Q9EST3 from SWISSPROT, and a bipartite NLS (nuclear localisation signals) between 194-211, and these lie in family EIF4E-T_N. EIF4E is the eukaryotic translation initiation factor 4E that is the rate-limiting factor for cap-dependent translation initiation [].
Probab=31.35 E-value=30 Score=38.40 Aligned_cols=80 Identities=26% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 014327 317 HLKVLTGQAMPNGGPMMNYPSFGAGQQFYPNNQAMHTLLTAQQFQQLQIHSQKQQQQFQQHQLHQMQQQQLQQQQQEQQQ 396 (426)
Q Consensus 317 rLRvaaGq~~~~gg~mmN~~Sfg~~qQ~~~~sQ~m~q~~~qQQ~QQ~Q~~~q~qqqqqqqqqqqqqqqqqqqqqqqqqqq 396 (426)
..++..+.+...+..-+-...+....+.......++.+...+++..++.+++...+++.+++|++.++++++.+.|++++
T Consensus 464 ~qri~s~~~~~~g~~q~L~nP~~~~~~~~~i~~vlq~~~~sqqqa~l~~~~~la~q~~~~~qQ~~~qq~qq~~~~q~~~~ 543 (578)
T PF10477_consen 464 QQRIPSPDGFHSGPEQQLGNPQQTAMQREVIPAVLQEQQNSQQQAALQQQQQLANQQQPQQQQQQQQQQQQQLFSQQQQQ 543 (578)
T ss_pred hccCCCCcCcCcCchhcccCCCCCCCCcchHHHHHHhhccccchhhhhhhhhHHHHHHHHhhhhhhhhhcchhhcCccCc
No 476
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=31.34 E-value=7.1e+02 Score=27.05 Aligned_cols=168 Identities=20% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCchhHhhhccHHHHhhhhhcChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 206 APSADSKKAMSAAKLAELALIDPKRAKRIWANR-----QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 206 ~~~~~~kk~~~~~~l~ela~~DpKR~KRil~NR-----eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
|--++..+.+...+-.=-.....|+.-++.+|. +.++..|+--.+...++...+-.-+.+...+.++-..|+...
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl 153 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL 153 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcccCCchhHHHHHHHHHH
Q 014327 281 NGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNYPSFGAGQQFYPNNQAMHTLLTAQQF 360 (426)
Q Consensus 281 ~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~~gg~mmN~~Sfg~~qQ~~~~sQ~m~q~~~qQQ~ 360 (426)
..|..+-..|..+++.|..+.....+--+.|+-++.+|+.-...+.. ..+.+...+.
T Consensus 154 ~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ-----------------------~~~~la~r~~ 210 (499)
T COG4372 154 KTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQ-----------------------EAQNLATRAN 210 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 014327 361 QQLQIHSQKQQQQFQQHQLHQMQQQQLQQQQQEQQQ 396 (426)
Q Consensus 361 QQ~Q~~~q~qqqqqqqqqqqqqqqqqqqqqqqqqqq 396 (426)
.-++.--.++--+++-||-.|--++-.-+-+|--|+
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ 246 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQ 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.23 E-value=4.8e+02 Score=25.03 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 230 RAKRIWANRQSAARSKERK-MRYIAELERKVQTLQTEATSLSAQLTLLQRDTN-GLTAENSELKLRLQTMEQQVHLQDAL 307 (426)
Q Consensus 230 R~KRil~NReSA~RSReRK-kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~-~L~sEN~eLK~rLqaLeQQ~qLrdAL 307 (426)
++-....+=.-..+.+.|| +.-+.+++.++.....+...+..++..|..-.. .=..|-.+|..+|..++..+.-.+.-
T Consensus 61 qll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~k 140 (194)
T PF15619_consen 61 QLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKK 140 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 014327 308 NDALKEEIQ 316 (426)
Q Consensus 308 nEaLk~EVq 316 (426)
+..|...+.
T Consensus 141 i~~Lek~le 149 (194)
T PF15619_consen 141 IQELEKQLE 149 (194)
T ss_pred HHHHHHHHH
No 478
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=31.17 E-value=2.9e+02 Score=27.97 Aligned_cols=58 Identities=21% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 233 Ril~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
++..+=...-....-+..+..+|..+.+.|+.++..+...+..+.. |+.||..|+.-|
T Consensus 49 ~v~~~p~~~v~~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~----l~~EN~~Lr~lL 106 (284)
T COG1792 49 SVVAAPFEFVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVES----LEEENKRLKELL 106 (284)
T ss_pred HHHhhHHHHHHhHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
No 479
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=31.13 E-value=7.8e+02 Score=28.53 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 223 LALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 223 la~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+...+.++.+-+| .+-|+|-..-+-.|..+--.+......|..+++.|+.....-..|...|...|+.-..++.
T Consensus 296 Le~e~~~K~q~LL------~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AEle 369 (739)
T PF07111_consen 296 LEPEFSRKCQQLL------SRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELE 369 (739)
T ss_pred CCchhHHHHHHHH------HHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 014327 303 LQDALNDALKEEIQH 317 (426)
Q Consensus 303 LrdALnEaLk~EVqr 317 (426)
+-......|..++.+
T Consensus 370 vERv~sktLQ~ELsr 384 (739)
T PF07111_consen 370 VERVGSKTLQAELSR 384 (739)
T ss_pred HHHHhhHHHHHHHHH
No 480
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.86 E-value=81 Score=27.87 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
..+..|++.+..|+.||+.||.+++.|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=30.76 E-value=4.6e+02 Score=24.69 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred ccCCCCCCchhHhhhccHHHHhhhhhcC--hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 200 MSASDEAPSADSKKAMSAAKLAELALID--PKRAKRIWANRQSAARSK-----ERKMRYIAELERKVQTLQTEATSLSAQ 272 (426)
Q Consensus 200 ~~~~~~~~~~~~kk~~~~~~l~ela~~D--pKR~KRil~NReSA~RSR-----eRKkqyieeLE~kVq~Lq~ENs~Ls~q 272 (426)
.+.++....++.-..++-..|+-.-.-| ..|.|+-++-++.|+.+| .|=..--++||.-+.-+..|+..++..
T Consensus 13 ~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkk 92 (159)
T PF04949_consen 13 ISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKK 92 (159)
T ss_pred CCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q ss_pred HHHHHHhHHhHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 014327 273 LTLLQRDTNGLTAE----NSELKLRLQTMEQQVHLQDAL---NDALKEEIQHLKV 320 (426)
Q Consensus 273 l~~Lqrq~~~L~sE----N~eLK~rLqaLeQQ~qLrdAL---nEaLk~EVqrLRv 320 (426)
+..+.++...|..- -++++.-|.++......+..| .-.|..|-.+||+
T Consensus 93 ID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 93 IDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=30.73 E-value=7.8e+02 Score=29.23 Aligned_cols=102 Identities=24% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHh
Q 014327 217 AAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQ--------------TEATSLSAQLTLLQRDTNG 282 (426)
Q Consensus 217 ~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq--------------~ENs~Ls~ql~~Lqrq~~~ 282 (426)
..+...--..+.||+.--.+.|+.-+.-++.+.....+|..++..|+ .+...|-.. +...+++..
T Consensus 596 ~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d-~i~~~q~ee 674 (988)
T KOG2072|consen 596 AKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDAD-QIKARQIEE 674 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHH-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 283 LTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 283 L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
|..|+.+|..+|+..+... |.+-.++..|--.|....
T Consensus 675 l~Ke~kElq~rL~~q~Kki---Dh~ERA~R~EeiPL~e~~ 711 (988)
T KOG2072|consen 675 LEKERKELQSRLQYQEKKI---DHLERAKRLEEIPLIEKA 711 (988)
T ss_pred HHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhhHHHH
No 483
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.72 E-value=1.2e+02 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.....+..++.++..++.||..|..++..|
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.66 E-value=6.3e+02 Score=30.64 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 014327 236 ANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQD----ALNDAL 311 (426)
Q Consensus 236 ~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrd----ALnEaL 311 (426)
+|+.+-+.+-..-.....+||.++..|......+..+...|...+..+...-.+++..+..|+..+-+.. -+|+.|
T Consensus 388 ~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 388 RNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Q ss_pred HHHHHHHHhhhc
Q 014327 312 KEEIQHLKVLTG 323 (426)
Q Consensus 312 k~EVqrLRvaaG 323 (426)
...+..|-.+++
T Consensus 468 ~~~~~ql~das~ 479 (1141)
T KOG0018|consen 468 VEVLDQLLDASA 479 (1141)
T ss_pred HHHHHHHHhhhh
No 485
>PHA02109 hypothetical protein
Probab=30.63 E-value=1.3e+02 Score=28.99 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
|+..|.+|+.++..|..|...|..++..++.....-.+|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=30.54 E-value=2.2e+02 Score=31.59 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 236 ANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQR------DTNGLTAENSELKLRLQTMEQQVHLQDALND 309 (426)
Q Consensus 236 ~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr------q~~~L~sEN~eLK~rLqaLeQQ~qLrdALnE 309 (426)
+.+..+..++.+++. ++.||.++..|+.+...|..++..-.- ....|..|..+++.++..+..+......+.+
T Consensus 555 ~~~~~~~~~~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 633 (635)
T PRK11147 555 VKRSSKKLSYKLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEALKN 633 (635)
T ss_pred hhhhhhhhchHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 487
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.49 E-value=2.7e+02 Score=32.84 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHhHHHHHHHHHHHHHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQR-----------DTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr-----------q~~~L~sEN~eLK~rLqaLeQ 299 (426)
.||+..+-..-.+-++-+..-+.+||.++..|++|-..|..++..+.. ....|+.+...|+..+.....
T Consensus 490 ~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~ 569 (913)
T KOG0244|consen 490 TRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRK 569 (913)
T ss_pred HHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhh
Q 014327 300 QVHLQDALNDA---LKEEIQHLKVLT 322 (426)
Q Consensus 300 Q~qLrdALnEa---Lk~EVqrLRvaa 322 (426)
-...++...+. |..||..++...
T Consensus 570 l~~~~~~~~~~~~kl~~ei~~~k~~k 595 (913)
T KOG0244|consen 570 LIKPKPKSEGIRAKLLQEIHIAKGQK 595 (913)
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHH
No 488
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=30.47 E-value=2.9e+02 Score=28.49 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTG 323 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaG 323 (426)
|.||..+...+..+...|.........+......+-.+|+..+..++....+.+...+.+.+.....+...+
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETKRNAG 72 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
No 489
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.35 E-value=3.2e+02 Score=30.87 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 231 AKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLT-AENSELKLRLQTMEQQVHLQDALND 309 (426)
Q Consensus 231 ~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~-sEN~eLK~rLqaLeQQ~qLrdALnE 309 (426)
..++-..++.+.+..+--...+.+|+.++...+.+....+.+...+..+...+. .+..+|..++...+.+....++..+
T Consensus 182 ~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 182 AGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 014327 310 ALKEEIQ 316 (426)
Q Consensus 310 aLk~EVq 316 (426)
.++..+.
T Consensus 262 ~l~~~l~ 268 (754)
T TIGR01005 262 SVKKALQ 268 (754)
T ss_pred HHHHHHh
No 490
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=30.34 E-value=1.2e+02 Score=27.07 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 240 SAARSKERKMRYIAELERKVQTLQTEATSLSA 271 (426)
Q Consensus 240 SA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ 271 (426)
+.+..-+--+..|.+||.++..|+.||.-|+.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.33 E-value=9.4e+02 Score=29.17 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALN 308 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALn 308 (426)
+-++++.++=.+-.......+.-|++||......-.+...|...+....-++..+..++.++|.++..+.....-.=..-
T Consensus 397 ~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE 476 (1200)
T KOG0964|consen 397 SEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREE 476 (1200)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 014327 309 DALKEEIQHLK 319 (426)
Q Consensus 309 EaLk~EVqrLR 319 (426)
.+|+..+..++
T Consensus 477 ~~l~~~i~~~~ 487 (1200)
T KOG0964|consen 477 KKLRSLIANLE 487 (1200)
T ss_pred HHHHHHHHHHH
No 492
>PF14282 FlxA: FlxA-like protein
Probab=30.29 E-value=2.7e+02 Score=23.99 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQT----EATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~----ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.+.|..|..++..|.. .......++..|+.++..|..+...|..+.......
T Consensus 25 ~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 25 QKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 493
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=30.24 E-value=4.3e+02 Score=24.19 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
++..|...++..+.........++.+..++..|..+...-...-..|..++.-..++...-+..|.+|+
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~ 88 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLK 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=30.10 E-value=3e+02 Score=26.93 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLL--QRDTNGLTAENSELKLRLQTMEQQVHLQD 305 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~L--qrq~~~L~sEN~eLK~rLqaLeQQ~qLrd 305 (426)
.+|+ +++.+++.|+.+...|..-+..- -.++..++.|..+++.+|+.++.+....+
T Consensus 132 ~~y~-D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 132 EQYV-DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=30.05 E-value=5.3e+02 Score=25.15 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKE 313 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~ 313 (426)
+-.....++-|+.+|+..+..+.....+|...+.........-+.-+.+|...+..+.............++.
T Consensus 72 ps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 72 PSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 496
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=30.00 E-value=4.1e+02 Score=28.04 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
..++.|+.+-.++..|+.|....+..-.........|..|+...-..+..+.-+++..+-|..+|+.|.+.|
T Consensus 247 ~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel 318 (391)
T KOG1850|consen 247 KFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNEL 318 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
No 497
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.97 E-value=4.1e+02 Score=23.86 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.+.++.+..++..+..+...|..........+..+...+.+|..++=.+-..+.+.....-+|..|-..|+
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~ 113 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELR 113 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
No 498
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=29.88 E-value=4.3e+02 Score=28.10 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQR------DTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr------q~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
+.-+..|+.+++.++.+...|...+..+.. ........-..++.....+..++.........|.+++.++
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=29.54 E-value=3.7e+02 Score=29.59 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDA 310 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEa 310 (426)
.+|++.|-..++....-...+...+..+.+....+..+..++.-+|..+..+......+.|+
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 500
>PHA03011 hypothetical protein; Provisional
Probab=29.51 E-value=3.6e+02 Score=23.87 Aligned_cols=63 Identities=27% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
|..+.++......|.++...|-.+...++.|-+.|..-++.-..+.+...+..+.|++.+..+
T Consensus 56 ~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 56 EGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Done!