Query 014327
Match_columns 426
No_of_seqs 334 out of 970
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.4 6.4E-13 2.2E-17 101.0 7.1 52 229-280 1-52 (55)
2 1t2k_D Cyclic-AMP-dependent tr 99.2 9.6E-11 3.3E-15 90.3 9.1 55 229-283 1-55 (61)
3 2wt7_A Proto-oncogene protein 99.2 1.2E-10 4.1E-15 90.5 9.4 56 228-283 1-56 (63)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 3.9E-10 1.3E-14 87.2 8.1 55 229-283 1-55 (62)
5 2dgc_A Protein (GCN4); basic d 98.9 2.4E-09 8.3E-14 83.4 7.2 49 232-280 12-60 (63)
6 1gd2_E Transcription factor PA 98.9 2.5E-09 8.4E-14 85.1 7.4 66 226-291 5-70 (70)
7 1ci6_A Transcription factor AT 98.7 1.8E-08 6.3E-13 78.3 7.1 51 229-279 2-52 (63)
8 1gu4_A CAAT/enhancer binding p 98.3 3.7E-06 1.3E-10 68.1 9.8 55 226-280 12-66 (78)
9 1hjb_A Ccaat/enhancer binding 98.3 5.1E-06 1.7E-10 68.6 9.9 54 225-278 11-64 (87)
10 3a5t_A Transcription factor MA 98.1 1.8E-07 6.2E-12 79.9 -1.4 52 226-277 34-85 (107)
11 2wt7_B Transcription factor MA 98.0 1.4E-05 4.9E-10 66.3 8.4 65 226-297 24-88 (90)
12 1skn_P DNA-binding domain of S 97.1 8.3E-05 2.8E-09 61.4 0.7 52 207-258 40-91 (92)
13 2oqq_A Transcription factor HY 96.8 0.003 1E-07 45.2 6.1 39 249-294 2-40 (42)
14 3iot_A Maltose-binding protein 96.1 0.00095 3.3E-08 66.9 0.3 9 121-129 190-198 (449)
15 3iot_A Maltose-binding protein 96.1 0.0013 4.5E-08 65.9 1.3 9 226-234 285-293 (449)
16 2jee_A YIIU; FTSZ, septum, coi 94.8 0.41 1.4E-05 38.9 11.2 42 252-293 8-49 (81)
17 2kz5_A Transcription factor NF 94.5 0.00058 2E-08 56.4 -6.2 45 208-252 45-89 (91)
18 2w6a_A ARF GTPase-activating p 92.6 0.45 1.5E-05 36.5 7.2 40 252-291 22-61 (63)
19 2jee_A YIIU; FTSZ, septum, coi 92.3 1.4 4.8E-05 35.8 10.3 50 250-299 20-69 (81)
20 3s4r_A Vimentin; alpha-helix, 92.1 2.2 7.7E-05 35.0 11.6 64 257-320 23-91 (93)
21 3hnw_A Uncharacterized protein 91.0 1.6 5.4E-05 38.4 10.1 56 247-302 72-127 (138)
22 3efg_A Protein SLYX homolog; x 90.9 0.51 1.7E-05 37.9 6.3 50 250-299 14-63 (78)
23 2c9l_Y EB1, zebra, BZLF1 trans 90.6 1.4 4.7E-05 33.4 7.9 22 235-256 7-28 (63)
24 3oja_B Anopheles plasmodium-re 90.3 3.7 0.00013 42.4 13.9 70 253-322 505-581 (597)
25 3a7p_A Autophagy protein 16; c 89.7 1.2 4.1E-05 40.0 8.3 63 251-313 69-131 (152)
26 3u1c_A Tropomyosin alpha-1 cha 89.6 8 0.00027 32.0 14.5 57 244-300 17-73 (101)
27 3ol1_A Vimentin; structural ge 89.4 5.4 0.00018 34.0 11.9 37 267-303 65-101 (119)
28 1deb_A APC protein, adenomatou 89.4 2.3 7.8E-05 31.7 8.1 46 252-297 5-50 (54)
29 3oja_B Anopheles plasmodium-re 89.3 6.3 0.00022 40.6 14.7 16 306-321 558-573 (597)
30 3cve_A Homer protein homolog 1 89.0 5.9 0.0002 31.4 10.9 48 254-301 4-51 (72)
31 3a7p_A Autophagy protein 16; c 88.3 7.6 0.00026 34.9 12.4 58 252-311 91-148 (152)
32 3cvf_A Homer-3, homer protein 88.0 3.4 0.00012 33.3 9.1 49 253-301 9-57 (79)
33 3s9g_A Protein hexim1; cyclin 88.0 2.2 7.5E-05 35.8 8.1 19 253-271 40-58 (104)
34 3mq9_A Bone marrow stromal ant 87.1 13 0.00045 37.4 15.1 70 251-320 398-471 (471)
35 3u59_A Tropomyosin beta chain; 86.8 12 0.00041 30.8 14.5 59 244-302 17-75 (101)
36 3vkg_A Dynein heavy chain, cyt 86.6 3.4 0.00011 52.3 12.2 59 258-316 2029-2087(3245)
37 2dfs_A Myosin-5A; myosin-V, in 86.4 14 0.00049 42.1 16.4 20 279-298 1024-1043(1080)
38 3he5_A Synzip1; heterodimeric 85.8 2.9 0.0001 29.9 6.6 22 251-272 4-25 (49)
39 3qh9_A Liprin-beta-2; coiled-c 84.6 9.5 0.00033 30.9 10.0 62 254-315 16-77 (81)
40 2ve7_C Kinetochore protein NUF 83.3 1.4 4.9E-05 42.2 5.5 60 201-272 104-163 (250)
41 1go4_E MAD1 (mitotic arrest de 82.6 4.8 0.00017 33.8 7.8 22 306-327 75-96 (100)
42 3m48_A General control protein 82.6 1.4 4.9E-05 29.9 3.7 27 252-278 2-28 (33)
43 2oxj_A Hybrid alpha/beta pepti 81.8 1.9 6.4E-05 29.5 4.0 28 251-278 2-29 (34)
44 3hnw_A Uncharacterized protein 81.8 11 0.00039 32.9 10.3 49 250-298 82-130 (138)
45 3swy_A Cyclic nucleotide-gated 81.7 5.7 0.0002 28.9 6.9 44 254-300 2-45 (46)
46 3o0z_A RHO-associated protein 81.5 31 0.0011 31.4 13.6 11 309-319 100-110 (168)
47 3swk_A Vimentin; cytoskeleton, 81.3 11 0.00037 30.4 9.3 68 253-320 3-84 (86)
48 3cvf_A Homer-3, homer protein 81.1 2.6 9E-05 34.0 5.4 36 282-317 17-52 (79)
49 3u1c_A Tropomyosin alpha-1 cha 80.6 23 0.00078 29.2 15.1 63 254-316 34-96 (101)
50 1kd8_B GABH BLL, GCN4 acid bas 80.3 2.2 7.6E-05 29.5 4.0 28 251-278 2-29 (36)
51 2lz1_A Nuclear factor erythroi 79.7 0.0055 1.9E-07 50.6 -10.8 43 208-250 45-87 (90)
52 3na7_A HP0958; flagellar bioge 79.7 41 0.0014 31.6 14.3 6 313-318 157-162 (256)
53 2v71_A Nuclear distribution pr 79.4 24 0.00082 32.6 12.1 20 277-296 94-113 (189)
54 1wle_A Seryl-tRNA synthetase; 79.2 48 0.0016 34.7 15.8 77 251-327 71-158 (501)
55 2oqq_A Transcription factor HY 78.8 6.2 0.00021 28.2 6.1 22 252-273 19-40 (42)
56 2dfs_A Myosin-5A; myosin-V, in 78.7 24 0.00082 40.3 14.3 10 311-320 1028-1037(1080)
57 3na7_A HP0958; flagellar bioge 78.3 45 0.0015 31.3 15.5 8 316-323 182-189 (256)
58 3c3f_A Alpha/beta peptide with 78.2 2.9 9.9E-05 28.6 4.0 28 251-278 2-29 (34)
59 1nkp_B MAX protein, MYC proto- 78.2 3 0.0001 33.1 4.9 28 249-276 46-73 (83)
60 3i00_A HIP-I, huntingtin-inter 78.0 29 0.001 29.7 11.5 46 245-297 35-80 (120)
61 1i84_S Smooth muscle myosin he 78.0 14 0.00047 42.4 12.2 38 253-290 860-897 (1184)
62 1hjb_A Ccaat/enhancer binding 77.8 18 0.00063 29.4 9.6 27 272-298 37-63 (87)
63 3c3g_A Alpha/beta peptide with 77.4 4.2 0.00014 27.6 4.6 27 252-278 2-28 (33)
64 2wq1_A General control protein 77.4 4.2 0.00015 27.6 4.6 27 252-278 2-28 (33)
65 3swf_A CGMP-gated cation chann 77.1 8.1 0.00028 30.8 7.0 47 253-302 3-49 (74)
66 3mq7_A Bone marrow stromal ant 77.1 11 0.00039 32.4 8.4 34 287-320 73-106 (121)
67 1kd8_A GABH AIV, GCN4 acid bas 77.0 2.2 7.7E-05 29.5 3.3 27 252-278 3-29 (36)
68 4ath_A MITF, microphthalmia-as 75.8 10 0.00035 30.8 7.5 44 248-302 37-80 (83)
69 3s9g_A Protein hexim1; cyclin 75.6 21 0.0007 30.0 9.4 30 249-278 64-93 (104)
70 2hy6_A General control protein 75.5 3.5 0.00012 28.2 3.9 28 251-278 2-29 (34)
71 1i84_S Smooth muscle myosin he 75.0 16 0.00056 41.7 11.7 8 258-265 886-893 (1184)
72 3o0z_A RHO-associated protein 74.9 49 0.0017 30.0 15.6 63 233-302 73-135 (168)
73 2bni_A General control protein 74.7 3.8 0.00013 28.0 3.9 28 251-278 2-29 (34)
74 1t2k_D Cyclic-AMP-dependent tr 74.6 23 0.00078 26.4 8.8 28 273-300 24-51 (61)
75 2v4h_A NF-kappa-B essential mo 74.2 36 0.0012 29.0 10.7 59 240-298 35-103 (110)
76 1ses_A Seryl-tRNA synthetase; 73.9 48 0.0016 33.7 13.8 97 227-328 10-107 (421)
77 2wvr_A Geminin; DNA replicatio 73.8 14 0.00047 34.7 8.8 44 264-307 115-158 (209)
78 1uo4_A General control protein 73.8 4.1 0.00014 27.9 3.9 27 252-278 3-29 (34)
79 3ghg_A Fibrinogen alpha chain; 73.8 12 0.0004 39.7 9.2 51 244-294 104-154 (562)
80 3cve_A Homer protein homolog 1 73.6 12 0.00042 29.6 7.3 39 252-290 9-47 (72)
81 2dq0_A Seryl-tRNA synthetase; 73.6 53 0.0018 33.8 14.1 72 256-331 44-115 (455)
82 1gu4_A CAAT/enhancer binding p 73.4 28 0.00097 27.7 9.5 25 273-297 38-62 (78)
83 2v71_A Nuclear distribution pr 73.3 54 0.0018 30.3 12.7 47 252-298 90-136 (189)
84 3u06_A Protein claret segregat 72.8 9.1 0.00031 39.1 8.1 52 261-319 7-58 (412)
85 1wle_A Seryl-tRNA synthetase; 72.8 30 0.001 36.2 12.2 67 253-322 80-157 (501)
86 3a7o_A Autophagy protein 16; c 72.7 13 0.00046 29.3 7.2 32 268-299 43-74 (75)
87 3oja_A Leucine-rich immune mol 72.5 35 0.0012 34.4 12.4 42 261-302 425-466 (487)
88 3qne_A Seryl-tRNA synthetase, 72.4 33 0.0011 35.8 12.4 66 254-326 44-112 (485)
89 1t6f_A Geminin; coiled-coil, c 72.1 5.7 0.0002 27.5 4.3 29 264-292 7-35 (37)
90 3tnu_B Keratin, type II cytosk 71.8 46 0.0016 28.3 11.7 12 310-321 114-125 (129)
91 1nlw_A MAD protein, MAX dimeri 71.2 8.2 0.00028 30.7 5.9 32 248-279 45-76 (80)
92 3tnu_A Keratin, type I cytoske 70.6 36 0.0012 29.1 10.3 13 309-321 115-127 (131)
93 1jcd_A Major outer membrane li 70.5 17 0.00058 27.0 7.0 27 252-278 6-32 (52)
94 4emc_A Monopolin complex subun 70.0 15 0.00052 34.0 8.1 44 251-301 14-57 (190)
95 3m9b_A Proteasome-associated A 69.8 5 0.00017 38.7 5.0 11 310-320 86-96 (251)
96 4etp_A Kinesin-like protein KA 69.4 13 0.00045 37.6 8.4 45 268-319 14-58 (403)
97 1ci6_A Transcription factor AT 69.1 20 0.00067 27.2 7.3 30 272-301 24-53 (63)
98 2yy0_A C-MYC-binding protein; 68.3 9.2 0.00032 28.4 5.2 18 277-294 32-49 (53)
99 3m91_A Proteasome-associated A 68.2 21 0.00073 26.4 7.1 19 254-272 13-31 (51)
100 3i00_A HIP-I, huntingtin-inter 67.8 50 0.0017 28.3 10.5 70 250-322 15-84 (120)
101 3vmx_A Voltage-gated hydrogen 67.7 22 0.00075 26.1 6.9 37 256-292 3-39 (48)
102 4h22_A Leucine-rich repeat fli 67.5 46 0.0016 28.0 9.8 79 227-308 8-88 (103)
103 2wt7_A Proto-oncogene protein 67.1 38 0.0013 25.5 9.3 31 271-301 23-53 (63)
104 1go4_E MAD1 (mitotic arrest de 67.0 8.7 0.0003 32.2 5.3 25 252-276 14-38 (100)
105 1uii_A Geminin; human, DNA rep 66.8 30 0.001 28.1 8.3 31 264-294 46-76 (83)
106 3m0d_C TNF receptor-associated 66.6 40 0.0014 25.6 9.7 52 248-299 4-55 (65)
107 3ghg_A Fibrinogen alpha chain; 66.4 41 0.0014 35.6 11.4 42 283-324 115-156 (562)
108 2xdj_A Uncharacterized protein 65.5 51 0.0018 26.5 10.0 35 252-286 22-56 (83)
109 2xdj_A Uncharacterized protein 65.4 52 0.0018 26.4 10.1 33 267-299 23-55 (83)
110 2zxx_A Geminin; coiled-coil, c 65.2 27 0.00092 28.1 7.7 35 264-298 34-68 (79)
111 2lw1_A ABC transporter ATP-bin 65.2 39 0.0013 26.9 8.8 52 251-302 23-80 (89)
112 1nkp_A C-MYC, MYC proto-oncoge 64.8 16 0.00053 29.5 6.4 19 249-267 51-69 (88)
113 3u59_A Tropomyosin beta chain; 64.6 57 0.0019 26.6 15.1 39 239-277 33-71 (101)
114 1a93_B MAX protein, coiled coi 64.0 9.5 0.00032 26.2 4.1 28 270-297 6-33 (34)
115 1fmh_A General control protein 63.8 14 0.00048 24.5 4.7 25 253-277 4-28 (33)
116 1jnm_A Proto-oncogene C-JUN; B 63.8 7.6 0.00026 29.2 4.0 29 272-300 23-51 (62)
117 1dip_A Delta-sleep-inducing pe 63.7 7.2 0.00025 31.2 4.0 26 267-292 18-43 (78)
118 3q8t_A Beclin-1; autophagy, AT 63.2 61 0.0021 26.5 11.2 73 247-319 22-94 (96)
119 4ati_A MITF, microphthalmia-as 63.1 3.8 0.00013 35.0 2.5 44 248-302 72-115 (118)
120 3bas_A Myosin heavy chain, str 62.6 58 0.002 26.1 9.5 49 252-300 37-85 (89)
121 3q0x_A Centriole protein; cent 62.2 34 0.0012 32.4 9.1 58 226-289 160-217 (228)
122 1am9_A Srebp-1A, protein (ster 62.0 11 0.00039 29.8 5.0 15 278-292 57-71 (82)
123 1ses_A Seryl-tRNA synthetase; 61.9 48 0.0016 33.7 10.9 67 255-324 40-107 (421)
124 2r2v_A GCN4 leucine zipper; co 61.8 15 0.0005 25.2 4.6 27 252-278 3-29 (34)
125 1deq_A Fibrinogen (alpha chain 61.3 43 0.0015 34.1 10.1 66 230-295 92-158 (390)
126 3mq9_A Bone marrow stromal ant 61.2 55 0.0019 32.8 11.1 15 251-265 405-419 (471)
127 3jsv_C NF-kappa-B essential mo 61.1 70 0.0024 26.5 9.9 49 236-284 9-60 (94)
128 2w83_C C-JUN-amino-terminal ki 60.5 64 0.0022 25.8 9.1 43 257-299 9-58 (77)
129 2eqb_B RAB guanine nucleotide 60.4 73 0.0025 26.5 11.3 49 251-299 13-61 (97)
130 3tnu_B Keratin, type II cytosk 60.1 79 0.0027 26.8 12.0 24 253-276 39-62 (129)
131 1ic2_A Tropomyosin alpha chain 60.1 60 0.0021 25.4 9.7 51 247-297 17-67 (81)
132 3tnu_A Keratin, type I cytoske 60.0 80 0.0027 26.8 12.1 15 254-268 42-56 (131)
133 3efg_A Protein SLYX homolog; x 59.8 27 0.00093 27.7 6.8 44 254-297 11-54 (78)
134 2wt7_B Transcription factor MA 59.7 72 0.0024 26.1 11.6 56 242-300 29-84 (90)
135 3m9b_A Proteasome-associated A 59.1 12 0.00042 36.0 5.5 33 252-284 56-88 (251)
136 3qne_A Seryl-tRNA synthetase, 59.0 41 0.0014 35.2 9.9 32 251-282 34-65 (485)
137 2ocy_A RAB guanine nucleotide 58.5 1E+02 0.0035 27.6 15.9 69 256-326 78-149 (154)
138 2v66_B Nuclear distribution pr 56.7 91 0.0031 26.4 10.9 69 252-320 37-108 (111)
139 3nmd_A CGMP dependent protein 56.4 43 0.0015 26.4 7.3 32 288-319 36-67 (72)
140 1dip_A Delta-sleep-inducing pe 54.3 10 0.00036 30.2 3.4 19 252-270 24-42 (78)
141 1zme_C Proline utilization tra 54.3 11 0.00036 28.0 3.4 24 250-273 44-67 (70)
142 2yy0_A C-MYC-binding protein; 53.9 24 0.00081 26.1 5.2 20 261-280 23-42 (53)
143 2efr_A General control protein 53.4 1.2E+02 0.0042 27.0 11.7 69 252-320 79-154 (155)
144 3a2a_A Voltage-gated hydrogen 53.4 35 0.0012 25.8 5.9 29 259-287 13-41 (58)
145 1gd2_E Transcription factor PA 53.2 65 0.0022 25.1 7.8 41 253-300 25-65 (70)
146 4fla_A Regulation of nuclear P 52.7 1.2E+02 0.0042 26.7 11.5 33 236-268 65-97 (152)
147 3mq7_A Bone marrow stromal ant 52.7 1.1E+02 0.0038 26.3 11.3 34 280-313 73-106 (121)
148 3htk_A Structural maintenance 52.6 64 0.0022 23.5 8.6 45 254-298 9-53 (60)
149 1wlq_A Geminin; coiled-coil; 2 52.5 92 0.0032 25.2 9.0 30 264-293 38-67 (83)
150 3m91_A Proteasome-associated A 52.4 55 0.0019 24.1 6.9 23 256-278 8-30 (51)
151 1ic2_A Tropomyosin alpha chain 51.9 84 0.0029 24.6 11.7 37 264-300 20-56 (81)
152 4etp_A Kinesin-like protein KA 51.6 46 0.0016 33.7 8.6 46 252-297 12-57 (403)
153 2dq3_A Seryl-tRNA synthetase; 51.4 44 0.0015 34.0 8.5 92 227-328 10-111 (425)
154 2ocy_A RAB guanine nucleotide 50.9 1.4E+02 0.0047 26.7 10.9 50 251-300 45-94 (154)
155 1wt6_A Myotonin-protein kinase 50.8 97 0.0033 25.0 10.3 16 237-252 14-29 (81)
156 3vkg_A Dynein heavy chain, cyt 50.3 1E+02 0.0035 39.4 12.8 11 118-128 1762-1772(3245)
157 4emc_A Monopolin complex subun 50.2 93 0.0032 28.8 9.6 45 251-295 21-65 (190)
158 1fmh_A General control protein 49.3 21 0.00073 23.6 3.7 28 274-301 4-31 (33)
159 2dgc_A Protein (GCN4); basic d 48.6 22 0.00076 27.0 4.4 27 273-299 32-58 (63)
160 1am9_A Srebp-1A, protein (ster 48.4 97 0.0033 24.3 10.6 9 249-257 22-30 (82)
161 1jcd_A Major outer membrane li 48.4 80 0.0027 23.3 7.6 32 257-288 4-35 (52)
162 1m1j_A Fibrinogen alpha subuni 48.1 1.4E+02 0.0048 31.2 11.5 68 229-296 89-157 (491)
163 1m1j_C Fibrinogen gamma chain; 48.0 1.7E+02 0.0057 29.9 12.1 19 201-219 15-33 (409)
164 2j5u_A MREC protein; bacterial 47.5 9.6 0.00033 36.3 2.7 39 282-324 23-61 (255)
165 1x8y_A Lamin A/C; structural p 47.3 1.1E+02 0.0036 24.4 10.6 23 272-294 29-51 (86)
166 3uux_B Mitochondrial division 46.8 49 0.0017 31.7 7.4 48 251-298 178-225 (242)
167 2oxj_A Hybrid alpha/beta pepti 46.8 28 0.00096 23.8 4.1 15 308-322 17-31 (34)
168 2eqb_B RAB guanine nucleotide 46.4 76 0.0026 26.4 7.6 36 256-291 25-60 (97)
169 1joc_A EEA1, early endosomal a 45.6 1E+02 0.0035 26.0 8.7 22 254-275 15-36 (125)
170 3nmd_A CGMP dependent protein 45.3 71 0.0024 25.2 6.9 29 248-276 38-66 (72)
171 3cl3_D NF-kappa-B essential mo 45.2 33 0.0011 30.0 5.4 22 285-306 55-76 (130)
172 2er8_A Regulatory protein Leu3 44.4 12 0.0004 28.1 2.2 22 249-270 48-69 (72)
173 1p9i_A Cortexillin I/GCN4 hybr 44.3 29 0.001 22.7 3.7 17 281-297 9-25 (31)
174 1m1j_B Fibrinogen beta chain; 43.9 2E+02 0.007 29.8 12.1 11 230-240 107-117 (464)
175 3swk_A Vimentin; cytoskeleton, 43.1 1E+02 0.0035 24.6 7.8 55 267-321 3-57 (86)
176 1dh3_A Transcription factor CR 42.7 23 0.0008 26.2 3.6 27 273-299 24-50 (55)
177 2dq3_A Seryl-tRNA synthetase; 42.7 31 0.0011 35.1 5.8 12 286-297 83-94 (425)
178 3m48_A General control protein 42.5 31 0.0011 23.5 3.8 14 309-322 17-30 (33)
179 2zqm_A Prefoldin beta subunit 42.4 78 0.0027 25.6 7.2 14 249-262 33-46 (117)
180 2no2_A HIP-I, huntingtin-inter 42.2 1.5E+02 0.0051 24.7 10.5 23 241-263 20-42 (107)
181 3vp9_A General transcriptional 41.3 40 0.0014 27.8 5.2 37 285-324 50-86 (92)
182 4dzn_A Coiled-coil peptide CC- 41.1 54 0.0018 21.7 4.7 11 286-296 17-27 (33)
183 3lss_A Seryl-tRNA synthetase; 40.7 2.1E+02 0.0073 29.7 11.8 34 294-327 113-146 (484)
184 1f5n_A Interferon-induced guan 40.6 3.6E+02 0.012 28.6 15.0 15 308-322 569-583 (592)
185 3s4r_A Vimentin; alpha-helix, 40.1 1.5E+02 0.005 24.0 10.4 28 271-298 56-83 (93)
186 2wuj_A Septum site-determining 39.6 29 0.00098 25.8 3.7 26 251-276 28-53 (57)
187 3lss_A Seryl-tRNA synthetase; 39.5 1.1E+02 0.0039 31.8 9.5 19 284-302 109-128 (484)
188 2oto_A M protein; helical coil 39.3 1.9E+02 0.0065 25.0 11.7 31 253-283 53-83 (155)
189 2oa5_A Hypothetical protein BQ 39.2 16 0.00055 31.1 2.5 24 251-274 9-32 (110)
190 4h22_A Leucine-rich repeat fli 39.2 1.7E+02 0.0059 24.5 10.7 59 264-322 23-81 (103)
191 1ik9_A DNA repair protein XRCC 38.8 2.4E+02 0.0082 26.1 11.5 32 252-283 141-172 (213)
192 1hlo_A Protein (transcription 38.6 27 0.00092 27.3 3.6 6 251-256 58-63 (80)
193 3htk_A Structural maintenance 38.5 1.1E+02 0.0038 22.1 8.4 48 247-294 9-56 (60)
194 2xu6_A MDV1 coiled coil; prote 38.4 63 0.0022 25.5 5.6 44 252-295 23-66 (72)
195 3mov_A Lamin-B1; LMNB1, B-type 38.3 1.6E+02 0.0055 24.0 10.9 12 310-321 76-87 (95)
196 3bbp_D GRIP and coiled-coil do 38.3 30 0.001 27.2 3.7 44 255-298 20-63 (71)
197 1fxk_C Protein (prefoldin); ar 37.7 95 0.0033 25.9 7.2 23 254-276 99-121 (133)
198 3gp4_A Transcriptional regulat 37.0 2E+02 0.0067 24.6 11.1 32 205-237 40-71 (142)
199 3he4_A Synzip6; heterodimeric 37.0 45 0.0016 24.3 4.2 33 252-284 19-51 (56)
200 2efr_A General control protein 36.8 2.3E+02 0.0078 25.2 12.2 11 255-265 40-50 (155)
201 3c3f_A Alpha/beta peptide with 36.7 49 0.0017 22.6 4.0 14 310-323 19-32 (34)
202 1fmh_B General control protein 36.5 57 0.002 21.6 4.2 21 280-300 10-30 (33)
203 1lwu_C Fibrinogen gamma chain; 35.6 98 0.0034 30.6 7.9 7 255-261 17-23 (323)
204 3u06_A Protein claret segregat 35.5 92 0.0031 31.6 7.9 44 255-298 15-58 (412)
205 2wuj_A Septum site-determining 34.9 31 0.001 25.6 3.2 25 275-299 31-55 (57)
206 1a93_B MAX protein, coiled coi 34.6 55 0.0019 22.4 4.0 22 258-279 8-29 (34)
207 2i1j_A Moesin; FERM, coiled-co 34.1 81 0.0028 33.3 7.5 50 252-301 337-386 (575)
208 3s84_A Apolipoprotein A-IV; fo 34.0 3.2E+02 0.011 26.1 13.2 86 238-326 164-251 (273)
209 3bas_A Myosin heavy chain, str 33.8 1.8E+02 0.0061 23.2 12.6 40 254-293 18-57 (89)
210 1deq_A Fibrinogen (alpha chain 33.2 4.1E+02 0.014 27.1 13.1 43 282-324 117-159 (390)
211 3trt_A Vimentin; cytoskeleton, 33.1 1.6E+02 0.0055 22.4 9.3 14 285-298 56-69 (77)
212 3plt_A Sphingolipid long chain 33.0 2.8E+02 0.0096 26.3 10.3 63 233-300 97-160 (234)
213 4b4t_K 26S protease regulatory 32.9 58 0.002 33.2 5.9 33 266-298 44-76 (428)
214 3c3g_A Alpha/beta peptide with 32.6 63 0.0021 21.9 4.0 13 310-322 18-30 (33)
215 2v66_B Nuclear distribution pr 32.4 2.3E+02 0.0078 24.0 15.2 27 273-299 37-63 (111)
216 3ljm_A Coil Ser L9C; de novo d 31.7 80 0.0027 20.6 4.3 21 254-274 5-25 (31)
217 3ra3_A P1C; coiled coil domain 31.3 73 0.0025 20.4 4.0 15 284-298 6-20 (28)
218 4e61_A Protein BIM1; EB1-like 31.1 2.4E+02 0.0081 23.7 8.6 40 258-297 12-51 (106)
219 1p9i_A Cortexillin I/GCN4 hybr 30.7 50 0.0017 21.6 3.2 23 254-276 3-25 (31)
220 1avy_A Fibritin, gpwac M; bact 30.2 1.1E+02 0.0037 24.2 5.7 15 255-269 13-27 (74)
221 2xnx_M M protein, M1-BC1; cell 30.1 1.5E+02 0.0052 26.3 7.3 48 277-324 86-133 (146)
222 2bni_A General control protein 29.9 62 0.0021 22.1 3.7 15 309-323 18-32 (34)
223 3q0x_A Centriole protein; cent 29.7 2E+02 0.007 27.1 8.7 35 268-302 175-209 (228)
224 2e7s_A RAB guanine nucleotide 29.7 63 0.0021 28.4 4.8 34 288-321 99-132 (135)
225 2j5u_A MREC protein; bacterial 29.6 25 0.00087 33.3 2.5 9 283-291 48-56 (255)
226 2xv5_A Lamin-A/C; structural p 29.5 2E+02 0.0069 22.4 8.1 9 311-319 45-53 (74)
227 2hy6_A General control protein 29.3 66 0.0023 21.9 3.7 14 310-323 19-32 (34)
228 2fxo_A Myosin heavy chain, car 29.0 2.6E+02 0.0089 23.5 15.3 45 276-320 74-118 (129)
229 3uux_B Mitochondrial division 28.9 3.9E+02 0.013 25.5 11.6 59 251-316 164-222 (242)
230 2nrj_A HBL B protein; enteroto 28.7 3.3E+02 0.011 26.7 10.5 75 247-324 120-194 (346)
231 2qyw_A Vesicle transport throu 28.5 2.3E+02 0.0079 23.0 7.9 30 246-275 45-74 (102)
232 1gk4_A Vimentin; intermediate 28.0 2.2E+02 0.0075 22.3 11.6 50 272-321 27-76 (84)
233 1rij_A E6APN1 peptide; Trp-CAG 27.9 14 0.00048 23.3 0.2 15 3-18 11-25 (26)
234 2b9c_A Striated-muscle alpha t 27.5 3.1E+02 0.011 23.9 14.5 79 216-300 22-102 (147)
235 2b9c_A Striated-muscle alpha t 27.3 3.1E+02 0.011 23.9 12.2 75 226-300 49-123 (147)
236 2v4h_A NF-kappa-B essential mo 27.3 2.9E+02 0.0097 23.4 11.6 27 252-278 33-59 (110)
237 3vem_A Helicase protein MOM1; 27.0 2.9E+02 0.01 23.6 8.3 29 245-273 56-84 (115)
238 1gk7_A Vimentin; intermediate 26.7 83 0.0028 21.8 4.0 15 280-294 22-36 (39)
239 2oto_A M protein; helical coil 26.4 3.1E+02 0.011 23.6 11.2 18 280-297 59-76 (155)
240 2aze_A Transcription factor DP 26.3 94 0.0032 27.9 5.4 18 246-263 22-39 (155)
241 1wt6_A Myotonin-protein kinase 26.1 2.6E+02 0.0088 22.5 8.6 6 254-259 18-23 (81)
242 1gk6_A Vimentin; intermediate 26.0 1.7E+02 0.0058 21.6 6.0 22 255-276 5-26 (59)
243 3thf_A Protein shroom; coiled- 25.4 2.3E+02 0.0078 26.2 7.9 30 245-274 14-43 (190)
244 1zxa_A CGMP-dependent protein 25.0 1E+02 0.0036 23.9 4.7 30 248-277 23-52 (67)
245 3oa7_A Head morphogenesis prot 24.7 1.6E+02 0.0054 27.5 6.7 32 267-298 40-71 (206)
246 1nkp_A C-MYC, MYC proto-oncoge 24.2 2.1E+02 0.007 22.8 6.6 12 284-295 72-83 (88)
247 3he5_A Synzip1; heterodimeric 23.9 2E+02 0.0068 20.5 7.2 39 276-321 8-46 (49)
248 1fmh_B General control protein 23.8 1.6E+02 0.0055 19.4 4.9 26 253-278 4-29 (33)
249 3e98_A GAF domain of unknown f 23.0 3.2E+02 0.011 25.6 8.8 47 252-302 67-113 (252)
250 2zdi_C Prefoldin subunit alpha 22.9 1.3E+02 0.0045 25.8 5.7 18 254-271 109-126 (151)
251 2zvf_A Alanyl-tRNA synthetase; 22.7 1.6E+02 0.0054 25.3 6.2 8 271-278 32-39 (171)
252 3w03_C DNA repair protein XRCC 22.7 1.2E+02 0.0042 27.8 5.6 33 249-281 151-183 (184)
253 3a2a_A Voltage-gated hydrogen 22.3 1.7E+02 0.0057 22.1 5.2 25 280-304 13-37 (58)
254 1fxk_C Protein (prefoldin); ar 22.1 3.3E+02 0.011 22.5 7.9 28 254-281 92-119 (133)
255 3r2p_A Apolipoprotein A-I; amp 21.9 4.1E+02 0.014 23.4 10.3 9 120-128 13-21 (185)
256 2ve7_C Kinetochore protein NUF 21.8 65 0.0022 30.6 3.7 19 282-300 159-177 (250)
257 2xnx_M M protein, M1-BC1; cell 21.7 4.2E+02 0.014 23.4 10.3 26 274-299 69-94 (146)
258 2ke4_A CDC42-interacting prote 21.3 3.1E+02 0.011 22.5 7.3 52 251-302 23-79 (98)
259 3azd_A Short alpha-tropomyosin 21.0 38 0.0013 23.3 1.4 29 251-279 5-33 (37)
260 1j1d_B Troponin T, TNT; THIN f 20.8 3.7E+02 0.013 22.4 9.8 22 271-292 49-70 (106)
261 4e61_A Protein BIM1; EB1-like 20.8 1.9E+02 0.0064 24.4 5.9 32 269-300 9-40 (106)
262 1hwt_C Protein (heme activator 20.5 58 0.002 24.6 2.6 22 248-269 56-77 (81)
263 1hs7_A Syntaxin VAM3; UP-and-D 20.5 2.7E+02 0.0093 22.9 6.7 48 254-301 37-87 (97)
264 2ve7_A Kinetochore protein HEC 20.4 1.3E+02 0.0043 29.4 5.5 11 119-129 70-80 (315)
265 1ik9_A DNA repair protein XRCC 20.3 5.1E+02 0.017 23.9 11.8 40 252-291 134-173 (213)
266 3qh9_A Liprin-beta-2; coiled-c 20.3 3.4E+02 0.012 21.8 10.0 10 254-263 30-39 (81)
267 2e7s_A RAB guanine nucleotide 20.2 4.3E+02 0.015 23.0 8.6 49 252-300 34-82 (135)
268 1ytz_T Troponin T; muscle, THI 20.2 3.8E+02 0.013 22.3 10.8 14 241-254 19-32 (107)
269 2fxo_A Myosin heavy chain, car 20.0 3.9E+02 0.013 22.4 12.1 63 254-316 38-107 (129)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.38 E-value=6.4e-13 Score=101.03 Aligned_cols=52 Identities=31% Similarity=0.487 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
||.+|+++||+||++||+||+.|+.+||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999998887654
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.17 E-value=9.6e-11 Score=90.32 Aligned_cols=55 Identities=31% Similarity=0.498 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
||.+|+.+||+||++||+||+.|+.+||.+|..|+.+|..|..++..|+.++..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999888766544333
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.17 E-value=1.2e-10 Score=90.52 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 228 PKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 228 pKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
.||.+|+.+||+||++||.||+.|+.+|+.+|..|+.+|..|..++..|+.++..|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999887665544433
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.06 E-value=3.9e-10 Score=87.25 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
|+.+|..+||+||++||+||+.|+.+||.+|..|+.+|..|..++..|..++..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999888776654433
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.91 E-value=2.4e-09 Score=83.37 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 232 KRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 232 KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
++..+||+||+|||+||+.|+.+||.+|..|+.+|..|..++..|....
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335699999999999999999999999999999999998888776543
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.91 E-value=2.5e-09 Score=85.07 Aligned_cols=66 Identities=26% Similarity=0.226 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
+++...||...||.|++.+|+||..||.+||.+|..|+.++..|..++..|...+..|..||..|+
T Consensus 5 ~~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 5 DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345567889999999999999999999999999999999999888887777777777777777654
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.75 E-value=1.8e-08 Score=78.29 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 229 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
|+.+++.+||.||.|+|.||+.++.+|+.+|+.|+.+|..|..++..|+.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999888876553
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.30 E-value=3.7e-06 Score=68.10 Aligned_cols=55 Identities=20% Similarity=0.191 Sum_probs=48.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
.|++-..|..+|.+||+|||++++....+++.+|..|+.||..|..+|..|..++
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788999999999999999999999999999999999998888765543
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.26 E-value=5.1e-06 Score=68.56 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=47.3
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 225 LIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 225 ~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
..|++-..|+.+|.+||+|||++++....+++.+|..|+.||..|..+|..|..
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777889999999999999999999999999999999999988876544
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.13 E-value=1.8e-07 Score=79.91 Aligned_cols=52 Identities=27% Similarity=0.373 Sum_probs=42.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
...|..||.++||.+|++||.||+..+.+||.++..|+.+...|..++..+.
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMK 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999888777766666555444433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.05 E-value=1.4e-05 Score=66.26 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=49.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
+..|..||.++||.+|+.||.||...+.+||..+..|..+...|..++.. +..|...+|.++++|
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~-------~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR-------LARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999998887777666666655444 444555566555443
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=97.15 E-value=8.3e-05 Score=61.44 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=40.7
Q ss_pred CchhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 207 PSADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERK 258 (426)
Q Consensus 207 ~~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~k 258 (426)
+-.|++..+....|.+-.+...|.+||..+||.+|++||.||+..+.+|+.-
T Consensus 40 pv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~ 91 (92)
T 1skn_P 40 SLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY 91 (92)
T ss_dssp CHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 3455666666666777777778999999999999999999999999888753
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.81 E-value=0.003 Score=45.24 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
|.|+.+||.+++.|+..|+.|..+++.|++ ||..|++-|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~-------EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQN-------ENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHh
Confidence 579999999999999999999998887655 676666544
No 14
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.14 E-value=0.00095 Score=66.88 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=4.4
Q ss_pred hhhhhcccc
Q 014327 121 DLLSMYLDM 129 (426)
Q Consensus 121 dlfs~y~d~ 129 (426)
+.+-+|.++
T Consensus 190 ~al~~~~~l 198 (449)
T 3iot_A 190 AGLTFLVDL 198 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555544
No 15
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.14 E-value=0.0013 Score=65.87 Aligned_cols=9 Identities=0% Similarity=0.180 Sum_probs=3.8
Q ss_pred cChHHHHHH
Q 014327 226 IDPKRAKRI 234 (426)
Q Consensus 226 ~DpKR~KRi 234 (426)
+.++-.+.+
T Consensus 285 ~s~e~~~~~ 293 (449)
T 3iot_A 285 LTDEGLEAV 293 (449)
T ss_dssp SSHHHHHHH
T ss_pred cCHHHHHHH
Confidence 344444433
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.80 E-value=0.41 Score=38.89 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
++.||.||+.+=..+.-|..++..|...+..|..+|.+++..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666655555555555555555555555555554443
No 17
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=94.51 E-value=0.00058 Score=56.39 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=35.3
Q ss_pred chhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 208 SADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYI 252 (426)
Q Consensus 208 ~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyi 252 (426)
-+|++..+....|.+..+...+.+||..+||++|+++|.||+..|
T Consensus 45 v~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~I 89 (91)
T 2kz5_A 45 VDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLETI 89 (91)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455566666666666666778999999999999999999997543
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=92.60 E-value=0.45 Score=36.52 Aligned_cols=40 Identities=45% Similarity=0.525 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
+..-|.||+.|..-|..|+.++..+++.+..|.+||..|+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3456889999999999999999999999999999999886
No 19
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.32 E-value=1.4 Score=35.77 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
.-|.-|.-+|..|+.+|..|..++..++.....|..||..|+.+......
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777766555443
No 20
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.14 E-value=2.2 Score=35.01 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 257 RKVQTLQTEATSLSAQLTLLQRDTN-----GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 257 ~kVq~Lq~ENs~Ls~ql~~Lqrq~~-----~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
.||..|+.+|..|..++..++.... .-..+...|+..|..+.....-.+...+.|.+++.++|.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666777777666666654321 124555556666665555544444555556666666653
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.97 E-value=1.6 Score=38.40 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
+.+..++.|+..+..+..|...|..++..++..+..+..++.+|+.++..|+.+..
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778888888888888888888888888888888888888888888876654
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.93 E-value=0.51 Score=37.86 Aligned_cols=50 Identities=18% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
..|.+||.|+..++.....|...|...++.+..|..+.+.|..++..++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35789999999999999999999999999988888888888888776653
No 23
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=90.59 E-value=1.4 Score=33.38 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 235 WANRQSAARSKERKMRYIAELE 256 (426)
Q Consensus 235 l~NReSA~RSReRKkqyieeLE 256 (426)
.+||.+++++|.|.+..++-..
T Consensus 7 yknr~asrk~rakfkn~lqh~r 28 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999988665544
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.29 E-value=3.7 Score=42.41 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQ-------RDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lq-------rq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
+.|+..++.++.....+..++..++ +....+..|..+++.+++....+.......++.++.++..|-...
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444 444444444444444444444443333333344444444443333
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.68 E-value=1.2 Score=40.02 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKE 313 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~ 313 (426)
-|..|+..+..|+.++..|...+..-.+.+..|..|...|..++..++..+.-....|..|.+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444555555556666666655555555544444444433
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.56 E-value=8 Score=32.01 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
-++.-...++.++.++..++.++..+..++..|++.+..|..+...+..+|......
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666666666666666666666666666665555555444433
No 27
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.41 E-value=5.4 Score=33.98 Aligned_cols=37 Identities=8% Similarity=0.325 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHL 303 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qL 303 (426)
..+...+..|++.......-...|..+++.|..++..
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555566666666555543
No 28
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=89.37 E-value=2.3 Score=31.65 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.+.|-+.|+.|..||+.|+.++..=..++..|+.|-..+|.-+..+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 3578899999999999999999988888888888887777655444
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.27 E-value=6.3 Score=40.63 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 014327 306 ALNDALKEEIQHLKVL 321 (426)
Q Consensus 306 ALnEaLk~EVqrLRva 321 (426)
.....+++|+..++..
T Consensus 558 ~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 558 AKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 30
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.98 E-value=5.9 Score=31.41 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
++..|++.++.+|..|..+|..++.+...-..+...++..|..+-..+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888777777777777666655443
No 31
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.26 E-value=7.6 Score=34.85 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDAL 311 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaL 311 (426)
|.+-..-++.|+.|...|..++..+......|..||..|-.|.-.-. .+-.+.+|+++
T Consensus 91 l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk--~qEAe~MN~an 148 (152)
T 3a7p_A 91 IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT--EKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 33444667888899999999999999999999999999988853322 22234555543
No 32
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.03 E-value=3.4 Score=33.33 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+++..|++.++.+|..|..+|..++.+...-..+...++..|..+-+.+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888877777777777776666655443
No 33
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.96 E-value=2.2 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSA 271 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ 271 (426)
.+||+++..|+.|+..|..
T Consensus 40 l~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666554
No 34
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.07 E-value=13 Score=37.35 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRD----TNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq----~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
+...|++++..++..-..++++-....+. ...|+.+..+-..+++.++.++.-..+..+.+.+||.+||.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444444444444333322222 12344555555568888888888778888888899988873
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.79 E-value=12 Score=30.77 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-++.-...++.+|.++..++.++..+...+..|++.+..|..+...+..+|......+.
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666666666666666666666666655555544433
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.57 E-value=3.4 Score=52.25 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQ 316 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVq 316 (426)
++...+.+...|..++..|+.+...+..|...|+.+++.++.++.....|...|..|-.
T Consensus 2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 33444445555556666666666667777777777777777776666666666555543
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.45 E-value=14 Score=42.08 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=9.8
Q ss_pred hHHhHHHHHHHHHHHHHHHH
Q 014327 279 DTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 279 q~~~L~sEN~eLK~rLqaLe 298 (426)
....|+.||..|+.++..|+
T Consensus 1024 kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555444
No 38
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=85.82 E-value=2.9 Score=29.91 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQ 272 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~q 272 (426)
.+..||..|..|+.||.+|...
T Consensus 4 lvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHh
Confidence 3567788888888887777654
No 39
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=84.63 E-value=9.5 Score=30.86 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEI 315 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EV 315 (426)
+...+.+-|-.|...|+-+|+.+..+...-+...+.-|..|..|.+++..+++..+.|..++
T Consensus 16 e~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 16 EKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344444555556666666666555555555566666778888888888877777666664
No 40
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=83.25 E-value=1.4 Score=42.16 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=38.0
Q ss_pred cCCCCCCchhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 201 SASDEAPSADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQ 272 (426)
Q Consensus 201 ~~~~~~~~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~q 272 (426)
.|-.+|+-.|.-| -++||.+|+|+-=.==.|.|+-|..-++++-.+.+.+..+...|..+
T Consensus 104 ~gv~DFtl~DL~k------------P~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~E 163 (250)
T 2ve7_C 104 CRVNDFETADILC------------PKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAA 163 (250)
T ss_dssp TTCCCCCHHHHHS------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cCCCCCcHhHhcC------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666555533 68999999987766677778777776666555555444444444333
No 41
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.63 E-value=4.8 Score=33.78 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCC
Q 014327 306 ALNDALKEEIQHLKVLTGQAMP 327 (426)
Q Consensus 306 ALnEaLk~EVqrLRvaaGq~~~ 327 (426)
-..+.|++||.+||.....+..
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4457889999999987766553
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=82.63 E-value=1.4 Score=29.95 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+..||.||+.|-.+|+.|..++.-|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 457999999999999999888876643
No 43
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=81.81 E-value=1.9 Score=29.51 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.+..||.||..|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3568999999998888888887776643
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.81 E-value=11 Score=32.91 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.-+++++.++..|..++..+..++..+.+.+..|..++.+|..++..|+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555554
No 45
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=81.67 E-value=5.7 Score=28.92 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+||.||..|+.-...|..+++-|-. ..++-...||.||..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLla---e~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLA---EYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4566666666555555555544433 2344566788888888764
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.51 E-value=31 Score=31.35 Aligned_cols=11 Identities=55% Similarity=0.957 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 014327 309 DALKEEIQHLK 319 (426)
Q Consensus 309 EaLk~EVqrLR 319 (426)
..|..|+.++|
T Consensus 100 ~~L~~El~~~k 110 (168)
T 3o0z_A 100 TSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 47
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=81.26 E-value=11 Score=30.42 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRD--------------TNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHL 318 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq--------------~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrL 318 (426)
.+|..+|..+..++..|..++..++.. ...++.+-..||.-+....-...-.++..+.|++||.-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444443322 233333344444444444333333445567777888777
Q ss_pred Hh
Q 014327 319 KV 320 (426)
Q Consensus 319 Rv 320 (426)
|.
T Consensus 83 kk 84 (86)
T 3swk_A 83 KK 84 (86)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 48
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=81.06 E-value=2.6 Score=33.96 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 282 GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQH 317 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqr 317 (426)
.++.+|..|+.+|..+++.+.-.....+.++.|+.+
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 52 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655554444444444444443
No 49
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.58 E-value=23 Score=29.20 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQ 316 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVq 316 (426)
.+|.+...++.++..|..++..+..+...+.......+..|..-+..+.-.++...+|...|+
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444544444
No 50
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.31 E-value=2.2 Score=29.50 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.+..||.||+.|-.+++.|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3568999999999888888888776654
No 51
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=79.71 E-value=0.0055 Score=50.58 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=32.6
Q ss_pred chhHhhhccHHHHhhhhhcChHHHHHHHHHHHHHHHHHHHHHH
Q 014327 208 SADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMR 250 (426)
Q Consensus 208 ~~~~kk~~~~~~l~ela~~DpKR~KRil~NReSA~RSReRKkq 250 (426)
-.|++..+....|.+-.+...+.+||..+||.+|+++|.||+.
T Consensus 45 v~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 45 VVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcc
Confidence 3455555555556666666678899999999999999999864
No 52
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.70 E-value=41 Score=31.61 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.3
Q ss_pred HHHHHH
Q 014327 313 EEIQHL 318 (426)
Q Consensus 313 ~EVqrL 318 (426)
+++..|
T Consensus 157 ~e~~~l 162 (256)
T 3na7_A 157 ETQQII 162 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.41 E-value=24 Score=32.61 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=7.6
Q ss_pred HHhHHhHHHHHHHHHHHHHH
Q 014327 277 QRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 277 qrq~~~L~sEN~eLK~rLqa 296 (426)
+.++..|..++..|+.+|..
T Consensus 94 q~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 54
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.17 E-value=48 Score=34.68 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTA-----------ENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~s-----------EN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.|.+|..+...++.+...|.++...+.+++..+.. +-.+|+.++..|..++...+.....+.+++..+-
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333221 2235555566666555555555566777777666
Q ss_pred hhhccCCC
Q 014327 320 VLTGQAMP 327 (426)
Q Consensus 320 vaaGq~~~ 327 (426)
....-++-
T Consensus 151 ~~iPN~~~ 158 (501)
T 1wle_A 151 LRLPNQTH 158 (501)
T ss_dssp TTSCCCCC
T ss_pred HhCCCCCC
Confidence 66655553
No 55
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.77 E-value=6.2 Score=28.20 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQL 273 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql 273 (426)
..+||.+|.+|+.||..|+.-+
T Consensus 19 naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 5688888888888888887543
No 56
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.71 E-value=24 Score=40.30 Aligned_cols=10 Identities=50% Similarity=0.501 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 014327 311 LKEEIQHLKV 320 (426)
Q Consensus 311 Lk~EVqrLRv 320 (426)
|++|...|+.
T Consensus 1028 L~~e~~~L~q 1037 (1080)
T 2dfs_A 1028 LKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 57
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.26 E-value=45 Score=31.28 Aligned_cols=8 Identities=0% Similarity=0.194 Sum_probs=3.5
Q ss_pred HHHHhhhc
Q 014327 316 QHLKVLTG 323 (426)
Q Consensus 316 qrLRvaaG 323 (426)
.++|...+
T Consensus 182 erir~~~~ 189 (256)
T 3na7_A 182 ERIRRWAK 189 (256)
T ss_dssp HHHHHHHG
T ss_pred HHHHHhCC
Confidence 44444443
No 58
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=78.19 E-value=2.9 Score=28.56 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.+..||.||+.|-.++..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3568999999998888888888776643
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.16 E-value=3 Score=33.07 Aligned_cols=28 Identities=36% Similarity=0.433 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
..||..|+.+++.|+.+...|..++..|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777766666655555554443333
No 60
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.04 E-value=29 Score=29.73 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 245 KERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
+..-..||..|+.+|..|+.|...-+.. ......||..|+..++.+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4445556666666665555554444433 223344455555544444
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.02 E-value=14 Score=42.36 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 290 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eL 290 (426)
.+|+.++..|+.+...+...+..+......|..+...+
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444434333333333333333333
No 62
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.79 E-value=18 Score=29.40 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
....+......|+.||..|+.+|..|.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777776665544
No 63
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=77.40 E-value=4.2 Score=27.61 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+..||.||+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467899999998888888888776543
No 64
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.37 E-value=4.2 Score=27.61 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+..||.||+.|-.++..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567999999999998888888776643
No 65
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=77.12 E-value=8.1 Score=30.79 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
++||.||..|+.-...|..+++.|-. ...+-...||.||..|+.++.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLa---Ey~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILA---EYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 35666776666666656555554433 234456779999999987765
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.07 E-value=11 Score=32.40 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 287 NSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 287 N~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
..+|+.+|..|.++++-..+..+.|+++.+.|.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 4444445555555444444445555555554443
No 67
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=77.03 E-value=2.2 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+..||.||+.|-.+++.|..++..|+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567899999998888888888776654
No 68
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=75.83 E-value=10 Score=30.81 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-..||..|...++.+..+.. ....|+..|+.|..+++.|+-+++
T Consensus 37 svdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHHH
Confidence 46888888776655544433 334578889999999999988775
No 69
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.62 E-value=21 Score=30.00 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
-..|.+|+.+|..|.+||..|..+.....+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777777777666555433
No 70
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=75.48 E-value=3.5 Score=28.18 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.+..||.||+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999998888888776654
No 71
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=75.01 E-value=16 Score=41.74 Aligned_cols=8 Identities=38% Similarity=0.264 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 014327 258 KVQTLQTE 265 (426)
Q Consensus 258 kVq~Lq~E 265 (426)
++..|+.+
T Consensus 886 ~l~~Le~e 893 (1184)
T 1i84_S 886 KHTQLCEE 893 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 72
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=74.89 E-value=49 Score=30.04 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 233 Ril~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.+-+--+.=++.|-+-...|.+|+.+|..|+.|...++..++.+ ..+|+.|..+|..|+....
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34444445567778888888999999999988888888776654 4566666666666665443
No 73
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=74.68 E-value=3.8 Score=28.04 Aligned_cols=28 Identities=11% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
.+..||.||+.|-.++..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3568999999998888888888776643
No 74
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.58 E-value=23 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+..|+.....|+.+|..|+.+|..|..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544433
No 75
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.23 E-value=36 Score=28.98 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhH-------HhHHHHHHHHHHHHHHHH
Q 014327 240 SAARSKERKMRYIAELERKVQTLQT---EATSLSAQLTLLQRDT-------NGLTAENSELKLRLQTME 298 (426)
Q Consensus 240 SA~RSReRKkqyieeLE~kVq~Lq~---ENs~Ls~ql~~Lqrq~-------~~L~sEN~eLK~rLqaLe 298 (426)
+|.+.=..|+..|.+|..++..+.. ++.-|.+|+.....++ ..+..|..+|..+|..|.
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3444444455556666655555554 4444555555554444 334444444444444443
No 76
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=73.91 E-value=48 Score=33.67 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNG-LTAENSELKLRLQTMEQQVHLQD 305 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~-L~sEN~eLK~rLqaLeQQ~qLrd 305 (426)
+|..+++.+++|-... -...|.+|..+...++.+...|.++...+.+++.. -..+-.+|+.++..+..++...+
T Consensus 10 ~~~~~~~~~~~r~~~~-----~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 10 EPEVFHRAIREKGVAL-----DLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp CHHHHHHHHHHHTCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 4555555555543210 03455555555555555555555555555544331 01123345555555555555555
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC
Q 014327 306 ALNDALKEEIQHLKVLTGQAMPN 328 (426)
Q Consensus 306 ALnEaLk~EVqrLRvaaGq~~~~ 328 (426)
.....+.+++..+-....-++-.
T Consensus 85 ~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 85 EALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC
Confidence 55556677776666665555533
No 77
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.84 E-value=14 Score=34.70 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDAL 307 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdAL 307 (426)
.||..|..+|..+...+..|..||.+|+.-+...+.-+-+.+.|
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999999999999987666555444444333
No 78
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=73.78 E-value=4.1 Score=27.87 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+..||.||+.|-.+|..|..++.-|..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567999999998888888888776643
No 79
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.77 E-value=12 Score=39.71 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 244 SKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 244 SReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
....+.+|-++||++++.|+.++..-..+|..|+..+..+..+.+.|..-|
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666555555555555555555554444444333
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.63 E-value=12 Score=29.55 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSEL 290 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eL 290 (426)
+.++|.+-..|+..+..|..++..-+.....+..|.+.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544444444443333
No 81
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.57 E-value=53 Score=33.79 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGP 331 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~~gg~ 331 (426)
..+++.|+.+.+.+++++..+...- .+-.+|+.++..|..++...+.....+.+++..+-....-++-...|
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP 115 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKG----EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVP 115 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 3344444444455555544432210 11223444444444444444444556677777666666665543333
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.35 E-value=28 Score=27.70 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=12.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
...+......|+.||..|+.+|..|
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666665555443
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.30 E-value=54 Score=30.26 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
|..|+..+..|...+..|...|..|...+..|+...+.+..-+..++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 45555556666666666666666666666666666665555554444
No 84
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.83 E-value=9.1 Score=39.08 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 261 TLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 261 ~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
+|+.|...|..++..+.+.+..+..|+.++++ ++...+.+...|..+++.|+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~-------~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKE-------QLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444444444444444444 44334444555556665554
No 85
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.76 E-value=30 Score=36.20 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQR-----------DTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr-----------q~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
.+|..+++.|+.+.+.+++++..+.. +...|..|-++|+.+|..++.++. .+.+.|...+-.|.-.
T Consensus 80 r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~---~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 80 RQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEA---QLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCC
Confidence 35566677777777777777776543 345788888888888888877665 3344444555555544
Q ss_pred h
Q 014327 322 T 322 (426)
Q Consensus 322 a 322 (426)
.
T Consensus 157 ~ 157 (501)
T 1wle_A 157 T 157 (501)
T ss_dssp C
T ss_pred C
Confidence 3
No 86
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=72.67 E-value=13 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 268 SLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 268 ~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
--.+....|..++-.|..||+.|..++..|++
T Consensus 43 lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 43 LKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 33444556667777888999999999887764
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.50 E-value=35 Score=34.40 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 261 TLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 261 ~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.++.|...+.......+.++..|..||..++..+..+..+..
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 334444444445555555555666666666666655554433
No 88
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=72.43 E-value=33 Score=35.82 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRD---TNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq---~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
+|..+++.|+.+.+.+++++..+.+. ...|..|-++|+.+|..|+.+ ...+.+++..+-....-++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~-------~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK-------EAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCC
Confidence 34445555555555666655554332 234555555555555555543 3455666665555555544
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=72.07 E-value=5.7 Score=27.52 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
.||..|...++.-..++..|..||.+|+.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 58899999999999999999999998863
No 90
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.78 E-value=46 Score=28.26 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhh
Q 014327 310 ALKEEIQHLKVL 321 (426)
Q Consensus 310 aLk~EVqrLRva 321 (426)
+|..||...|.+
T Consensus 114 ~Ld~EIatYRkL 125 (129)
T 3tnu_B 114 ALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 466666655543
No 91
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=71.23 E-value=8.2 Score=30.72 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
-..||..|+.+...|..|...|..++..|...
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888877777766666555544443
No 92
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.64 E-value=36 Score=29.08 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhh
Q 014327 309 DALKEEIQHLKVL 321 (426)
Q Consensus 309 EaLk~EVqrLRva 321 (426)
-+|..||...|.+
T Consensus 115 l~Ld~EIatYRkL 127 (131)
T 3tnu_A 115 TRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3466676655543
No 93
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=70.51 E-value=17 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
|.+|..+|++|..++..|+..+..++-
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444333
No 94
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.98 E-value=15 Score=34.03 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
.++.-..-|..|+.||..|..++..... |+..|+.+|+.++.+.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~-------ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKAT-------EIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Confidence 3444455677777777777777765544 4555555555555444
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=69.75 E-value=5 Score=38.74 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=6.2
Q ss_pred HHHHHHHHHHh
Q 014327 310 ALKEEIQHLKV 320 (426)
Q Consensus 310 aLk~EVqrLRv 320 (426)
.|++|+.+|+.
T Consensus 86 ~LkeElerL~s 96 (251)
T 3m9b_A 86 ALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhcC
Confidence 45556666653
No 96
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.36 E-value=13 Score=37.63 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 268 SLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 268 ~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
.|..++..+.+.+..+..++.+++.++. ..+.+...|..+++.||
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILI-------KEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcC
Confidence 3333333333333344444444444433 23333344445555554
No 97
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.05 E-value=20 Score=27.22 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=16.4
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
....|......|..+|.+|+.+|..|+.++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666665555443
No 98
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.27 E-value=9.2 Score=28.36 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=8.5
Q ss_pred HHhHHhHHHHHHHHHHHH
Q 014327 277 QRDTNGLTAENSELKLRL 294 (426)
Q Consensus 277 qrq~~~L~sEN~eLK~rL 294 (426)
+..+..|..++.+|+.+|
T Consensus 32 k~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 32 KEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444555555544
No 99
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.21 E-value=21 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQ 272 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~q 272 (426)
+|...+..|...|..|..-
T Consensus 13 ~l~~~l~~L~~rN~rL~~~ 31 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMET 31 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 100
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.85 E-value=50 Score=28.28 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 250 RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
.-|+.|-+.|..|..+...|..+ .++-+..|......|...|..-..+.+..-..++.|+.++..|+...
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E---~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTE---SQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777666666433 23444445555555555555444444333345667777777665544
No 101
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=67.73 E-value=22 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
|.++..|..-|..|..+++.|+..+..++.|+..|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4556666666666767777666666666666555553
No 102
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.46 E-value=46 Score=27.99 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKM-RY-IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ 304 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKk-qy-ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLr 304 (426)
+.|-.|-|+.| |+---+|-- .| |+-|-.++..++.....+..++....+++..+......|+..+..+..++..+
T Consensus 8 EEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 8 EEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666 554443321 11 33344444444444444444444444445555555555555555555555555
Q ss_pred HHHH
Q 014327 305 DALN 308 (426)
Q Consensus 305 dALn 308 (426)
|.|.
T Consensus 85 D~LI 88 (103)
T 4h22_A 85 EEML 88 (103)
T ss_dssp TSCC
T ss_pred HHHH
Confidence 5443
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.14 E-value=38 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
..+..|+.....|..+|..|+.+|..|..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777776665543
No 104
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.98 E-value=8.7 Score=32.21 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+..|..+|.+|+.|+..|..++..|
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444
No 105
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=66.79 E-value=30 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
.||..|..+|..+...+..|..+|.+|+.-.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888877544
No 106
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=66.56 E-value=40 Score=25.60 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
|...|.+||.++..++.-...+...+..+......+..++..-+..+..|++
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~ 55 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQ 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4456778888888877666655555444444333333333333333444443
No 107
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.44 E-value=41 Score=35.65 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 283 LTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 283 L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
|+.....||++|..--+++++.+...+.+..+|++|-+.+..
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333344444444455666677777665544
No 108
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=65.52 E-value=51 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAE 286 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sE 286 (426)
+.+|-.++..|+.|+..|+.++..+..++..|...
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34555666666666666665555554444444333
No 109
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=65.37 E-value=52 Score=26.44 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
..|..++..|+.++..|.-.+.++.-+|..|.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455555555555555444444444444443
No 110
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=65.24 E-value=27 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.||..|..++..++..+..|..||..|+.-+...+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999886554443
No 111
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=65.20 E-value=39 Score=26.93 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLL------QRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~L------qrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-++.|+.+|..|+.+...|..++..- -..+..|..+...+...|..+..+..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888887631 13455666667777777766666554
No 112
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.81 E-value=16 Score=29.51 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEAT 267 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs 267 (426)
..||..|+.+...|..+..
T Consensus 51 ~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666655555544433
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.65 E-value=57 Score=26.62 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 239 QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 239 eSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
..|.....++-.-|..|.++++.|+.+...+..++..+.
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555444444433
No 114
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.05 E-value=9.5 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 270 SAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 270 s~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
+.++...++++..|..+|..|..++..|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555666666555443
No 115
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.81 E-value=14 Score=24.50 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
..||..|...+.||-.|..++..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4556666655555555555555443
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.76 E-value=7.6 Score=29.24 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=16.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.+..|......|+.+|..|+.++..|..+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666555544
No 117
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=63.68 E-value=7.2 Score=31.15 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
..|+.++..|..++..|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666664
No 118
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.16 E-value=61 Score=26.49 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
+-.+-|.+||..-..+..+...+..+...|...-...-.+-+.++.++-.+..+..............+.+|+
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444444444443333333333334444443333333333333333344444443
No 119
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=63.12 E-value=3.8 Score=34.97 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-..||..|...++.|..+.. ....|..+|..|..+|+.|+.++.
T Consensus 72 aieYIk~Lq~~~~~l~~~~~-----------~~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 72 SVDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554443322 233567788888888888887664
No 120
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.62 E-value=58 Score=26.09 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
..+||.++..|..+.+.|..++......+..|.....+|...|..|+..
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888777777777777777777777666666543
No 121
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=62.15 E-value=34 Score=32.45 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=42.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSE 289 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~e 289 (426)
.+...+|+.|+.|-.+-++ .+..|+.+++..+.|+..+.+++...++....+......
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667889988777766554 356889999999999999998888877766655544433
No 122
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=62.02 E-value=11 Score=29.82 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=5.8
Q ss_pred HhHHhHHHHHHHHHH
Q 014327 278 RDTNGLTAENSELKL 292 (426)
Q Consensus 278 rq~~~L~sEN~eLK~ 292 (426)
.+...|..|+..|+.
T Consensus 57 ~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 57 HSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444433
No 123
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=61.90 E-value=48 Score=33.70 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 255 LERKVQTLQTEATSLSAQLTL-LQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~-Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
|..+++.|+.+.+.+++++.. -..+...|..+-++|+.++..++.++. .+.+.+...+-.|.-....
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALR---EKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCC
Confidence 344555555555666655542 113445667777777777777776654 3344445555556544433
No 124
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=61.84 E-value=15 Score=25.17 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+..||.||+.|-.++..|..++..|+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567899999888888888877776543
No 125
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.30 E-value=43 Score=34.12 Aligned_cols=66 Identities=11% Similarity=0.217 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 230 RAKRIWANRQSAARSK-ERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 230 R~KRil~NReSA~RSR-eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
-++.+++.|+.-..-- .+--+|.++||.++..|+..+..-...|..|+..+..+..+...|...|.
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554433333 33457788888888888877766555777777777777777777666653
No 126
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.22 E-value=55 Score=32.75 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTE 265 (426)
Q Consensus 251 yieeLE~kVq~Lq~E 265 (426)
-|.+++..+..+++.
T Consensus 405 ~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 405 ELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHH
Confidence 344555555544443
No 127
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=61.09 E-value=70 Score=26.49 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHhHH
Q 014327 236 ANRQSAARSKERKMRYIAELERKVQTLQ---TEATSLSAQLTLLQRDTNGLT 284 (426)
Q Consensus 236 ~NReSA~RSReRKkqyieeLE~kVq~Lq---~ENs~Ls~ql~~Lqrq~~~L~ 284 (426)
.|..+|-..=..|...|.+|-..+..++ ..+..|.+++.....++..=.
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aER 60 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAER 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566677777766665555 455566677666666554433
No 128
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=60.48 E-value=64 Score=25.82 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 257 RKVQTLQTEATSLSAQL-------TLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 257 ~kVq~Lq~ENs~Ls~ql-------~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
+.|+.|-.||+.|..-- ..|......|+.|+..|+.++.++.+
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444555555544322 23344555556666666666555543
No 129
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.40 E-value=73 Score=26.49 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
.|..|+.++.....+...|...+..-+......+.++..+...|..|..
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666666653
No 130
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.12 E-value=79 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.+|.+.|+.|+.|...|..+...|
T Consensus 39 ~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 39 SEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333344444444433333333333
No 131
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.08 E-value=60 Score=25.42 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.-...++.++.++...+..+..+...+..|++.+..|+.+...+..+|...
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555555555555444433
No 132
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.95 E-value=80 Score=26.82 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATS 268 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~ 268 (426)
+|.+.|+.|+.|...
T Consensus 42 elrr~iq~L~~el~~ 56 (131)
T 3tnu_A 42 ELRRTMQNLEIELQS 56 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 133
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=59.77 E-value=27 Score=27.69 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
+||.++..|+...+-+..-|..|.........+...|+.+|..|
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555555554444444333333333333333333
No 134
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=59.66 E-value=72 Score=26.14 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 242 ARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 242 ~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.|-+.+-..|...=..|- + .+...|..++..|..+...|..||..+...+..+.+.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr--~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKR--V-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554433221 1 2234455555555555556666666666666655544
No 135
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=59.09 E-value=12 Score=36.02 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLT 284 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~ 284 (426)
+.+|+.++..|...|..|...+..+++++..|.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666555555555444333333
No 136
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.02 E-value=41 Score=35.20 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNG 282 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~ 282 (426)
.|.+|..+...++.+...|.++...+.+++..
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555544444444433
No 137
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.52 E-value=1e+02 Score=27.55 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLT---AENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAM 326 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~---sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~ 326 (426)
|.....++.|...|++. +...-+..+. .+...++.++..|+.++.-.+.+.+.+..++..||.....+.
T Consensus 78 E~~~~~ie~ElEeLTas--LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTAS--LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555555532 1222222222 233446777778888888888899999999999998776554
No 138
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.67 E-value=91 Score=26.43 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ---VHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ---~qLrdALnEaLk~EVqrLRv 320 (426)
|..|+..+..|...+..|...+-.|...+..|+...+..-.-|+.|+.. +.-+-|+.+.=-.|-..|++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666666666666655555555555533 22333444333334444443
No 139
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.42 E-value=43 Score=26.45 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 288 SELKLRLQTMEQQVHLQDALNDALKEEIQHLK 319 (426)
Q Consensus 288 ~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLR 319 (426)
+....+|..++.++..++.+...|+.++..++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334445555555555555556666665554
No 140
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=54.34 E-value=10 Score=30.21 Aligned_cols=19 Identities=42% Similarity=0.422 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLS 270 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls 270 (426)
|.+|+.++..|+.||+.|+
T Consensus 24 I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 24 IRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 141
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=54.33 E-value=11 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 250 RYIAELERKVQTLQTEATSLSAQL 273 (426)
Q Consensus 250 qyieeLE~kVq~Lq~ENs~Ls~ql 273 (426)
.||+.||.+|..|+..+..|...|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999988888777776543
No 142
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.91 E-value=24 Score=26.11 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 014327 261 TLQTEATSLSAQLTLLQRDT 280 (426)
Q Consensus 261 ~Lq~ENs~Ls~ql~~Lqrq~ 280 (426)
.|+.||..|+.++..|...+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 143
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=53.45 E-value=1.2e+02 Score=26.97 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ-------VHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ-------~qLrdALnEaLk~EVqrLRv 320 (426)
|..|..+++..++...-....+..|+..+..|..+...-|.+...+... +.-..+-+-.|..||.||+.
T Consensus 79 Ik~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 79 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Confidence 4444444444444444444555555555555554444433333333222 22123445667788888864
No 144
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=53.44 E-value=35 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 014327 259 VQTLQTEATSLSAQLTLLQRDTNGLTAEN 287 (426)
Q Consensus 259 Vq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN 287 (426)
|..|..-|-.|..++..|...+...+.|+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEi 41 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEI 41 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333333333
No 145
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.21 E-value=65 Score=25.10 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+--+..|..|+.++..|. .....|..||..|+..|..|..+
T Consensus 25 eRK~~~i~~LE~~v~~le-------~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLK-------ELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333 33444556666666666555543
No 146
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=52.69 E-value=1.2e+02 Score=26.73 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 236 ANRQSAARSKERKMRYIAELERKVQTLQTEATS 268 (426)
Q Consensus 236 ~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~ 268 (426)
+.|.++.+--+.-.+...-|+..+..|..|...
T Consensus 65 kDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~d 97 (152)
T 4fla_A 65 TDKEAAERLSKTVDEACLLLAEYNGRLAAELED 97 (152)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444444444555555555444443
No 147
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.65 E-value=1.1e+02 Score=26.27 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=13.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 280 TNGLTAENSELKLRLQTMEQQVHLQDALNDALKE 313 (426)
Q Consensus 280 ~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~ 313 (426)
...|..|+..|+.+|+....++.-....++.|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3344444444444444444443333333443333
No 148
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=52.61 E-value=64 Score=23.47 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.|+..|..+..+...+...+..+...+..+......++..|..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444443
No 149
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.47 E-value=92 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
.||..|...+..+...+..|..||.+|+.-
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888899999888753
No 150
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.40 E-value=55 Score=24.11 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
|.++..|+.++..|.+++..|..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~ 30 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLME 30 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555444444333
No 151
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.91 E-value=84 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.....+..++.........+..|...|+.+++.|+..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444455555555444443
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.57 E-value=46 Score=33.68 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
|++|+.++..|+.++..+..++..+.+.....+.+.+.|-.+++.|
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444444444444333333444444444333
No 153
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=51.43 E-value=44 Score=33.99 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------hHHHHHHHHHHHHHH
Q 014327 227 DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTN----------GLTAENSELKLRLQT 296 (426)
Q Consensus 227 DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~----------~L~sEN~eLK~rLqa 296 (426)
+|..++..+++|-... .--...|.+|..+...++.+...|.++...+.+++. .|..+-++|+.++..
T Consensus 10 ~~~~~~~~~~~r~~~~---~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 86 (425)
T 2dq3_A 10 KPDYVKERLATRDKEL---VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDR 86 (425)
T ss_dssp CHHHHHHHHTTTCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHH
Confidence 4555555555553210 000233444444444444444444444444444433 334455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 014327 297 MEQQVHLQDALNDALKEEIQHLKVLTGQAMPN 328 (426)
Q Consensus 297 LeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~~ 328 (426)
++. ....+.+++..+-....-++..
T Consensus 87 ~~~-------~~~~~~~~~~~~~~~ipN~~~~ 111 (425)
T 2dq3_A 87 LEE-------ELRKVEEELKNTLLWIPNLPHP 111 (425)
T ss_dssp HHH-------HHHHHHHHHHHHHHTSCCCCCT
T ss_pred HHH-------HHHHHHHHHHHHHHhCCCCCCC
Confidence 544 4445666666666666555533
No 154
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.89 E-value=1.4e+02 Score=26.73 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.+..|+.++.....|...|...+..-.......+.++..+...|+.|...
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888888888888888888888888888888888743
No 155
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.78 E-value=97 Score=24.99 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014327 237 NRQSAARSKERKMRYI 252 (426)
Q Consensus 237 NReSA~RSReRKkqyi 252 (426)
|-+||..+--|-|+-|
T Consensus 14 eLQSALeaEIqAKQ~i 29 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSL 29 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566665555555533
No 156
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.31 E-value=1e+02 Score=39.44 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=6.6
Q ss_pred cchhhhhhccc
Q 014327 118 TEEDLLSMYLD 128 (426)
Q Consensus 118 ~~~dlfs~y~d 128 (426)
+.+.|+.+|++
T Consensus 1762 t~~~l~~~Fi~ 1772 (3245)
T 3vkg_A 1762 SEEELYKYFTS 1772 (3245)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44556666665
No 157
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.22 E-value=93 Score=28.79 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
-|..|-.++..|..++.+...++..|+++...+...-+.++..+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 355666666666666666666666666666666555555554443
No 158
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=49.29 E-value=21 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=18.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 274 TLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 274 ~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
..|.++....+.||..|..++..|+.++
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3344455556778888888777776543
No 159
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.60 E-value=22 Score=27.02 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=14.2
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
+..|......|..+|..|+.++..|..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555566666655555544
No 160
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=48.38 E-value=97 Score=24.30 Aligned_cols=9 Identities=33% Similarity=0.265 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 014327 249 MRYIAELER 257 (426)
Q Consensus 249 kqyieeLE~ 257 (426)
...+.+|..
T Consensus 22 n~~f~~L~~ 30 (82)
T 1am9_A 22 NDKIIELKD 30 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 161
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.36 E-value=80 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 014327 257 RKVQTLQTEATSLSAQLTLLQRDTNGLTAENS 288 (426)
Q Consensus 257 ~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~ 288 (426)
.+|..|..+..+|..++..|..+...|..+..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777666665555554333
No 162
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.09 E-value=1.4e+02 Score=31.18 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 014327 229 KRAKRIWANRQSAARSKERKM-RYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQT 296 (426)
Q Consensus 229 KR~KRil~NReSA~RSReRKk-qyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqa 296 (426)
+-++.+|+.|+.-..--+... +|.++||+++..|+..+..--..|..|+..+..+..+...|..-|..
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.03 E-value=1.7e+02 Score=29.94 Aligned_cols=19 Identities=5% Similarity=-0.081 Sum_probs=10.4
Q ss_pred cCCCCCCchhHhhhccHHH
Q 014327 201 SASDEAPSADSKKAMSAAK 219 (426)
Q Consensus 201 ~~~~~~~~~~~kk~~~~~~ 219 (426)
||.-+.+.=+.+..+...+
T Consensus 15 ~G~~CPT~C~i~d~L~k~e 33 (409)
T 1m1j_C 15 FGSYCPTTCGIADFFNKYR 33 (409)
T ss_dssp GCCEEECTTHHHHHHHHHH
T ss_pred cCCcCCCcccHHHHHHHHH
Confidence 5555556556655554443
No 164
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=47.46 E-value=9.6 Score=36.28 Aligned_cols=39 Identities=31% Similarity=0.240 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 282 GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
.|..||.+|+.++..|+.++. ..+.|+.|..+||.+.+.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI 61 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 344556666666655554432 344566677788776554
No 165
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.28 E-value=1.1e+02 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.162 Sum_probs=9.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHH
Q 014327 272 QLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
++..++..+..|+.+...++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~ 51 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARM 51 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 166
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=46.82 E-value=49 Score=31.69 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
-|.++..||+.|..-...+..+|..|+++-..|+.+...++.|+..++
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777777777777765554
No 167
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=46.80 E-value=28 Score=23.75 Aligned_cols=15 Identities=40% Similarity=0.621 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhh
Q 014327 308 NDALKEEIQHLKVLT 322 (426)
Q Consensus 308 nEaLk~EVqrLRvaa 322 (426)
++.|..||.|||...
T Consensus 17 n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 17 NXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 344445555555443
No 168
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.38 E-value=76 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 256 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 256 E~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
+.++..|..+...-...-.........+..|.-.|.
T Consensus 25 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 25 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333333333444444444444443
No 169
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.57 E-value=1e+02 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
..|..|..|+.++..|...+..
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 170
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=45.30 E-value=71 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
|...|.+||.++.....++..|..++..+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33447777777777777766666665543
No 171
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=45.19 E-value=33 Score=29.95 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 285 AENSELKLRLQTMEQQVHLQDA 306 (426)
Q Consensus 285 sEN~eLK~rLqaLeQQ~qLrdA 306 (426)
..|..|+.+++.|+..+.+-.+
T Consensus 55 ~~~d~L~lQ~esmeaalkmEr~ 76 (130)
T 3cl3_D 55 VQVDQLRMQGQSVEAALRMERQ 76 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443
No 172
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=44.37 E-value=12 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTLQTEATSLS 270 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls 270 (426)
..||++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788899999988876665543
No 173
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.26 E-value=29 Score=22.68 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHH
Q 014327 281 NGLTAENSELKLRLQTM 297 (426)
Q Consensus 281 ~~L~sEN~eLK~rLqaL 297 (426)
..|+.||+.||.+++.|
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777666554
No 174
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.95 E-value=2e+02 Score=29.84 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 014327 230 RAKRIWANRQS 240 (426)
Q Consensus 230 R~KRil~NReS 240 (426)
..-..|.|+.+
T Consensus 107 ~~l~~lsn~Ts 117 (464)
T 1m1j_B 107 DRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhh
Confidence 33334445444
No 175
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.06 E-value=1e+02 Score=24.61 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
..|+.++..+..+...|..|...++.-+..+.....---.+...+..++..||..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666655555555554433332223445555566666544
No 176
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.73 E-value=23 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=15.9
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
+..|......|..||..|+.++..|..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566667777666666553
No 177
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.69 E-value=31 Score=35.12 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 014327 286 ENSELKLRLQTM 297 (426)
Q Consensus 286 EN~eLK~rLqaL 297 (426)
+.++|+.++..+
T Consensus 83 ~~~~~~~~~~~~ 94 (425)
T 2dq3_A 83 EIDRLEEELRKV 94 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 178
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.45 E-value=31 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhh
Q 014327 309 DALKEEIQHLKVLT 322 (426)
Q Consensus 309 EaLk~EVqrLRvaa 322 (426)
..|..||.|||...
T Consensus 17 ~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 17 WNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555555443
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.37 E-value=78 Score=25.61 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 014327 249 MRYIAELERKVQTL 262 (426)
Q Consensus 249 kqyieeLE~kVq~L 262 (426)
..-+.+++.-..+|
T Consensus 33 ~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 33 QLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 180
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.23 E-value=1.5e+02 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAELERKVQTLQ 263 (426)
Q Consensus 241 A~RSReRKkqyieeLE~kVq~Lq 263 (426)
++....=..+.+.+|+.+|..++
T Consensus 20 ~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 20 ARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666544
No 181
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=41.35 E-value=40 Score=27.78 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 285 AENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 285 sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
.|-..++..|-.|+.... .+.+...+||.+||.....
T Consensus 50 ~Emq~Ir~tvyeLE~~h~---kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHR---KMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344444444444443322 2335566788888876644
No 182
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=41.10 E-value=54 Score=21.70 Aligned_cols=11 Identities=27% Similarity=0.446 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 014327 286 ENSELKLRLQT 296 (426)
Q Consensus 286 EN~eLK~rLqa 296 (426)
|...||.++.+
T Consensus 17 eiaalkfeiaa 27 (33)
T 4dzn_A 17 EIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 183
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.72 E-value=2.1e+02 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 014327 294 LQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMP 327 (426)
Q Consensus 294 LqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq~~~ 327 (426)
...|..++...+.....+.+++..+-...+-++-
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~ 146 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILH 146 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444444443344445566666666555555543
No 184
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.65 E-value=3.6e+02 Score=28.62 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhh
Q 014327 308 NDALKEEIQHLKVLT 322 (426)
Q Consensus 308 nEaLk~EVqrLRvaa 322 (426)
.+.|..||+.|+...
T Consensus 569 ~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 569 SRIMKNEIQDLQTKM 583 (592)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 467889999998874
No 185
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=40.11 E-value=1.5e+02 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
..+..|++.+..+..++..|..++..|.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666655555544
No 186
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.63 E-value=29 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
|+.++...+..|..||..|..++..|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444433
No 187
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=39.51 E-value=1.1e+02 Score=31.81 Aligned_cols=19 Identities=5% Similarity=0.232 Sum_probs=11.2
Q ss_pred HHH-HHHHHHHHHHHHHHHH
Q 014327 284 TAE-NSELKLRLQTMEQQVH 302 (426)
Q Consensus 284 ~sE-N~eLK~rLqaLeQQ~q 302 (426)
..| -++|+.+|..++.++.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~ 128 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQ 128 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 444 5666666666665544
No 188
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=39.25 E-value=1.9e+02 Score=25.03 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
.+|+.++..|+..|..|..++..+..+...|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666655555555444333
No 189
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=39.22 E-value=16 Score=31.11 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~ 274 (426)
-+++|+.++..|+.||..|+.++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999988875
No 190
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.22 E-value=1.7e+02 Score=24.53 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014327 264 TEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLT 322 (426)
Q Consensus 264 ~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaa 322 (426)
.|-+.|.-+|..|......++....+++..+......+...-.....|+.++..|+...
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544444444443333334445555555555443
No 191
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=38.85 E-value=2.4e+02 Score=26.11 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGL 283 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L 283 (426)
+..|..++..|+.+...|.+++..+......+
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544444333
No 192
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.59 E-value=27 Score=27.30 Aligned_cols=6 Identities=33% Similarity=0.672 Sum_probs=2.1
Q ss_pred HHHHHH
Q 014327 251 YIAELE 256 (426)
Q Consensus 251 yieeLE 256 (426)
||..|+
T Consensus 58 YI~~L~ 63 (80)
T 1hlo_A 58 YIQYMR 63 (80)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 193
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.48 E-value=1.1e+02 Score=22.14 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRL 294 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rL 294 (426)
+...++.+++.++..+..+...+...+..+...+.....+-..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555544
No 194
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=38.36 E-value=63 Score=25.54 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 295 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLq 295 (426)
|.++..|+..|..-...+-.+++.+.++-..|+.+...++.+|.
T Consensus 23 I~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 23 IRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444555555444444445555555554445444444444443
No 195
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.30 E-value=1.6e+02 Score=23.96 Aligned_cols=12 Identities=42% Similarity=0.470 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhh
Q 014327 310 ALKEEIQHLKVL 321 (426)
Q Consensus 310 aLk~EVqrLRva 321 (426)
+|..||...|..
T Consensus 76 ~Le~EIatYrkL 87 (95)
T 3mov_A 76 ALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355555555543
No 196
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=38.27 E-value=30 Score=27.21 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
|..++..++..+..|..-+..-...+..|+.+|+.||.+|..++
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334443344444444455555666665555444
No 197
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.65 E-value=95 Score=25.93 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.|+..+..|+.....++.+++.+
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~ 121 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 198
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.05 E-value=2e+02 Score=24.56 Aligned_cols=32 Identities=6% Similarity=-0.013 Sum_probs=16.2
Q ss_pred CCCchhHhhhccHHHHhhhhhcChHHHHHHHHH
Q 014327 205 EAPSADSKKAMSAAKLAELALIDPKRAKRIWAN 237 (426)
Q Consensus 205 ~~~~~~~kk~~~~~~l~ela~~DpKR~KRil~N 237 (426)
.|+..+...+.---.|.++- .-.+.+|+++..
T Consensus 40 ~Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~ 71 (142)
T 3gp4_A 40 KFGAEDLRWILFTRQMRRAG-LSIEALIDYLAL 71 (142)
T ss_dssp CBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 35556665544444444432 345666666654
No 199
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.00 E-value=45 Score=24.35 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLT 284 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~ 284 (426)
-..||.-|..|+..|..|...+..|..++..|+
T Consensus 19 naklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777766666554
No 200
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.80 E-value=2.3e+02 Score=25.23 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 014327 255 LERKVQTLQTE 265 (426)
Q Consensus 255 LE~kVq~Lq~E 265 (426)
.|.++..|+.+
T Consensus 40 aE~k~~eLEee 50 (155)
T 2efr_A 40 SEGKSAELEEE 50 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 201
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.67 E-value=49 Score=22.58 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhc
Q 014327 310 ALKEEIQHLKVLTG 323 (426)
Q Consensus 310 aLk~EVqrLRvaaG 323 (426)
.|..||.|||...+
T Consensus 19 ~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 19 HXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 34445555554443
No 202
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=36.53 E-value=57 Score=21.57 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=10.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 014327 280 TNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 280 ~~~L~sEN~eLK~rLqaLeQQ 300 (426)
...|...|...|.++++|+..
T Consensus 10 vqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 10 VQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 334444555556555555543
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.60 E-value=98 Score=30.64 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014327 255 LERKVQT 261 (426)
Q Consensus 255 LE~kVq~ 261 (426)
||..|..
T Consensus 17 ~e~~i~~ 23 (323)
T 1lwu_C 17 LEQIGVS 23 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 3333333
No 204
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.53 E-value=92 Score=31.62 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
|+.+++.|+.++..+..++..+.++....+.+.+.|-..|+.|.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333333333333333333334444555555554444
No 205
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.93 E-value=31 Score=25.64 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=15.1
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 275 LLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 275 ~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
.+..++..|..||.+|+.++..++.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666677777777777776654
No 206
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=34.56 E-value=55 Score=22.39 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014327 258 KVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
|..+.+.+...|+.++..|..+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 207
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.07 E-value=81 Score=33.33 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
..+|+.++..++.+.......|...++....|..+.+.....-..|+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~ 386 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQ 386 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877777777766666666666655555444444433
No 208
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=33.96 E-value=3.2e+02 Score=26.06 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014327 238 RQSAARSKERKMRYIAELERKVQTLQTEA-TSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH-LQDALNDALKEEI 315 (426)
Q Consensus 238 ReSA~RSReRKkqyieeLE~kVq~Lq~EN-s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q-LrdALnEaLk~EV 315 (426)
...|...+.|=..++++|..++.-+-.+. ..|...+..++. .|..-+..++.+++++.+.+. ..+.++.+|...+
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~ 240 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM 240 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 34466666666677777766665442221 112222223333 333445677777888876643 5667788999999
Q ss_pred HHHHhhhccCC
Q 014327 316 QHLKVLTGQAM 326 (426)
Q Consensus 316 qrLRvaaGq~~ 326 (426)
..||...+-..
T Consensus 241 e~l~~~l~~~~ 251 (273)
T 3s84_A 241 EQLRQKLGPHA 251 (273)
T ss_dssp HHHHHHHSCC-
T ss_pred HHHHHHhCcch
Confidence 99998886544
No 209
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=33.80 E-value=1.8e+02 Score=23.16 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
.++.++..|.............|...+..|..|...|..+
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444444333
No 210
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.18 E-value=4.1e+02 Score=27.08 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 282 GLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
.|+.....||.+|..--..+.+.....+.+..+|+||-+.+..
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444445555556667777888888877744
No 211
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=33.05 E-value=1.6e+02 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 014327 285 AENSELKLRLQTME 298 (426)
Q Consensus 285 sEN~eLK~rLqaLe 298 (426)
.|..+|+..|+.|+
T Consensus 56 ~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 56 QESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 212
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=32.98 E-value=2.8e+02 Score=26.31 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 233 RIWANRQSA-ARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 233 Ril~NReSA-~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.-|+|||.. +-+|.||..-..++. .|+... --+.+|..|+++....+.|+.....+|..+..+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 346777765 455555554433332 232211 123456666666666667776666666666553
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.93 E-value=58 Score=33.23 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 266 ATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 266 Ns~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
+..|..++..|++.+..|..|+..|+.++..+.
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~ 76 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLK 76 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555444443
No 214
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.58 E-value=63 Score=21.92 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhh
Q 014327 310 ALKEEIQHLKVLT 322 (426)
Q Consensus 310 aLk~EVqrLRvaa 322 (426)
.|..||.|||...
T Consensus 18 ~Le~EV~RLk~lL 30 (33)
T 3c3g_A 18 HXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
No 215
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.39 E-value=2.3e+02 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=16.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 273 LTLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 273 l~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
++.|+.++..|..+|..|+.+|..|++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665554
No 216
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=31.75 E-value=80 Score=20.61 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~ 274 (426)
.||.|...|+.....|...+.
T Consensus 5 alekkcaalesklqalekkle 25 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444444444433
No 217
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.35 E-value=73 Score=20.38 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014327 284 TAENSELKLRLQTME 298 (426)
Q Consensus 284 ~sEN~eLK~rLqaLe 298 (426)
+-||..|..++.+|.
T Consensus 6 efendaleqkiaalk 20 (28)
T 3ra3_A 6 EFENDALEQKIAALK 20 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 334444444443333
No 218
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.06 E-value=2.4e+02 Score=23.74 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 014327 258 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTM 297 (426)
Q Consensus 258 kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaL 297 (426)
.+...+.+...|..++..|...+..|+.|..-+=.+|..+
T Consensus 12 eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 51 (106)
T 4e61_A 12 ELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444555544444444333
No 219
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=30.73 E-value=50 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
.|..-+..|+.||..|.+++..|
T Consensus 3 qlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777776655
No 220
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=30.18 E-value=1.1e+02 Score=24.17 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSL 269 (426)
Q Consensus 255 LE~kVq~Lq~ENs~L 269 (426)
||..+..+..|..++
T Consensus 13 ~eT~iaa~~~ev~t~ 27 (74)
T 1avy_A 13 IETDIASVRQEVNTA 27 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cccchhhhheeeccc
Confidence 333333333333333
No 221
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=30.11 E-value=1.5e+02 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 277 QRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 277 qrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
..++..|..+...|...++.|+.+.++.++....|..++...|.+..+
T Consensus 86 ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKq 133 (146)
T 2xnx_M 86 KLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQ 133 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555566666666666667777777777666666555443
No 222
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.86 E-value=62 Score=22.09 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhc
Q 014327 309 DALKEEIQHLKVLTG 323 (426)
Q Consensus 309 EaLk~EVqrLRvaaG 323 (426)
..|..||.|||...+
T Consensus 18 ~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 18 HHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455555555443
No 223
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.72 E-value=2e+02 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 268 SLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 268 ~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
.+++++..|.+....+..|++.+..+|+..++++.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555566666666666666654
No 224
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.67 E-value=63 Score=28.39 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 288 SELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 288 ~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
..++.++..|+.+..-.+.+.+.+..++..||..
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666677776666643
No 225
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=29.64 E-value=25 Score=33.33 Aligned_cols=9 Identities=56% Similarity=0.781 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 014327 283 LTAENSELK 291 (426)
Q Consensus 283 L~sEN~eLK 291 (426)
|..||..|+
T Consensus 48 l~~En~rLr 56 (255)
T 2j5u_A 48 LKKENKDLK 56 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444444
No 226
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.54 E-value=2e+02 Score=22.44 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 014327 311 LKEEIQHLK 319 (426)
Q Consensus 311 Lk~EVqrLR 319 (426)
|..||...|
T Consensus 45 Le~EIatYR 53 (74)
T 2xv5_A 45 LDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344554444
No 227
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.32 E-value=66 Score=21.93 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhc
Q 014327 310 ALKEEIQHLKVLTG 323 (426)
Q Consensus 310 aLk~EVqrLRvaaG 323 (426)
.|..||.||+.+.|
T Consensus 19 ~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 19 HLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34445555555443
No 228
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=29.02 E-value=2.6e+02 Score=23.54 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=18.5
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 276 LQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKV 320 (426)
Q Consensus 276 Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRv 320 (426)
|......|.....++..++...+....-..+....|..+|..|+.
T Consensus 74 L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443333333333344444444443
No 229
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.90 E-value=3.9e+02 Score=25.52 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQ 316 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVq 316 (426)
-++-|+.+-.....|...+-.++..| ..-...+..+|+.|++.....+-....++..+.
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L-------~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rie 222 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENL-------RQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLD 222 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35567777766677776666666655 444555667777777776655555544444443
No 230
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=28.74 E-value=3.3e+02 Score=26.75 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014327 247 RKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 324 (426)
Q Consensus 247 RKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRvaaGq 324 (426)
.-+.+|..|...+...+.+...+...|..++.. |..-...++.....+...+.-..+..+.|+++|..++.....
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~---l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~ 194 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDS---IGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNY 194 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555444432 222233344444444444444445567888999888776653
No 231
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.49 E-value=2.3e+02 Score=23.02 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQTEATSLSAQLTL 275 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~ 275 (426)
+.|+..|.+.|..+...+.-...+.-++..
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~ 74 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRY 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666777777776555544444444433
No 232
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.96 E-value=2.2e+02 Score=22.35 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=22.8
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 272 QLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 272 ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
++..++..+..|+.+...++..++..-+.-+..=-..-+|..||...|..
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444555555555555555544333222221111223456666665543
No 233
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=27.90 E-value=14 Score=23.32 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 014327 3 KDKSLSHGGIPPPSGR 18 (426)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (426)
||.+ ++.|-||||..
T Consensus 11 kdgg-pssgrppps~~ 25 (26)
T 1rij_A 11 KDGG-PSSGRPPPSXX 25 (26)
T ss_dssp HTTG-GGSSSCCCC--
T ss_pred HcCC-CCCCCCCCCCc
Confidence 3444 66788999853
No 234
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.48 E-value=3.1e+02 Score=23.93 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=39.0
Q ss_pred cHHHHhhh--hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 014327 216 SAAKLAEL--ALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLR 293 (426)
Q Consensus 216 ~~~~l~el--a~~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~r 293 (426)
...+|.+. +..+-.|.++.|-||.-+-.-| |..||.+++....-............+.+..+..+......+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE~r~~~deEr------~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR 95 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIESRAQKDEEK------MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 95 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3334568888888888766554 344555554444444333333444444444444444444444
Q ss_pred HHHHHHH
Q 014327 294 LQTMEQQ 300 (426)
Q Consensus 294 LqaLeQQ 300 (426)
+...+..
T Consensus 96 ae~aE~k 102 (147)
T 2b9c_A 96 AELSEGK 102 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
No 235
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.32 E-value=3.1e+02 Score=23.91 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=52.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 226 IDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 226 ~DpKR~KRil~NReSA~RSReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
.|..|+..+...-.-|...-+=.-+-..+..+|+..++.+......+.......+..|..+.+.+-..|..|+..
T Consensus 49 ~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 344444444333333444444444446788899999999988888888888888888888888888777777643
No 236
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.31 E-value=2.9e+02 Score=23.45 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
+...|..+...+.++..|..++..+..
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554433
No 237
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.95 E-value=2.9e+02 Score=23.56 Aligned_cols=29 Identities=34% Similarity=0.362 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 245 KERKMRYIAELERKVQTLQTEATSLSAQL 273 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql 273 (426)
-++|.+-..++|++|+.+..+-..+..++
T Consensus 56 E~kklqLkse~e~E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 56 EEKKSILKAELERKMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777888888877776666555443
No 238
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=26.66 E-value=83 Score=21.82 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=6.6
Q ss_pred HHhHHHHHHHHHHHH
Q 014327 280 TNGLTAENSELKLRL 294 (426)
Q Consensus 280 ~~~L~sEN~eLK~rL 294 (426)
...|+.+|+.|..++
T Consensus 22 VR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 22 VRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 239
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=26.39 E-value=3.1e+02 Score=23.60 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=7.2
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 014327 280 TNGLTAENSELKLRLQTM 297 (426)
Q Consensus 280 ~~~L~sEN~eLK~rLqaL 297 (426)
...|...|..|+.++..+
T Consensus 59 ~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 59 KQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 240
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.30 E-value=94 Score=27.87 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014327 246 ERKMRYIAELERKVQTLQ 263 (426)
Q Consensus 246 eRKkqyieeLE~kVq~Lq 263 (426)
++|+.|+.+|......++
T Consensus 22 ~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888876665543
No 241
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.06 E-value=2.6e+02 Score=22.52 Aligned_cols=6 Identities=50% Similarity=0.700 Sum_probs=2.4
Q ss_pred HHHHHH
Q 014327 254 ELERKV 259 (426)
Q Consensus 254 eLE~kV 259 (426)
.|+..|
T Consensus 18 ALeaEI 23 (81)
T 1wt6_A 18 ALEEEV 23 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 242
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.03 E-value=1.7e+02 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 255 LERKVQTLQTEATSLSAQLTLL 276 (426)
Q Consensus 255 LE~kVq~Lq~ENs~Ls~ql~~L 276 (426)
+..+|..|+.+...++..+...
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q 26 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARL 26 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 243
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=25.44 E-value=2.3e+02 Score=26.17 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 245 KERKMRYIAELERKVQTLQTEATSLSAQLT 274 (426)
Q Consensus 245 ReRKkqyieeLE~kVq~Lq~ENs~Ls~ql~ 274 (426)
+.||.+-|..|.+|+..|+.+-..|...+.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777666665443
No 244
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.97 E-value=1e+02 Score=23.91 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSLSAQLTLLQ 277 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~Ls~ql~~Lq 277 (426)
|...|.+||..+..-..|+..|+.++..++
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677787777777777777766655543
No 245
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=24.74 E-value=1.6e+02 Score=27.51 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 014327 267 TSLSAQLTLLQRDTNGLTAENSELKLRLQTME 298 (426)
Q Consensus 267 s~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLe 298 (426)
.....+...|+..+..|.+|+..|+..+..|+
T Consensus 40 ~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 40 GSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 33333334444444445555666665555554
No 246
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.25 E-value=2.1e+02 Score=22.80 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 014327 284 TAENSELKLRLQ 295 (426)
Q Consensus 284 ~sEN~eLK~rLq 295 (426)
..+|..|+.+|+
T Consensus 72 ~~~n~~L~~rl~ 83 (88)
T 1nkp_A 72 RKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 247
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.88 E-value=2e+02 Score=20.46 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=18.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014327 276 LQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVL 321 (426)
Q Consensus 276 Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVqrLRva 321 (426)
|..+...|+.||.-||.+- |. +.-+..-|.+||..||..
T Consensus 8 lenevaslenenetlkkkn--lh-----kkdliaylekeianlrkk 46 (49)
T 3he5_A 8 LENEVASLENENETLKKKN--LH-----KKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhc--cc-----HHHHHHHHHHHHHHHHHH
Confidence 3344445555666665432 11 112334456666666654
No 248
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=23.84 E-value=1.6e+02 Score=19.41 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 253 AELERKVQTLQTEATSLSAQLTLLQR 278 (426)
Q Consensus 253 eeLE~kVq~Lq~ENs~Ls~ql~~Lqr 278 (426)
..|..+|+.|...|-.....+..|+.
T Consensus 4 qalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666666666666666665543
No 249
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.02 E-value=3.2e+02 Score=25.63 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
|.=.|+.+..|+.+|..|+.+++.|.. ...+|..+-.++..+.-++.
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 445567777777777777777766543 45678888888877776554
No 250
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.93 E-value=1.3e+02 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSA 271 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ 271 (426)
.|+..+..|+.....+..
T Consensus 109 ~l~~~l~~l~~~l~~l~~ 126 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEK 126 (151)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 251
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.73 E-value=1.6e+02 Score=25.31 Aligned_cols=8 Identities=0% Similarity=-0.043 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 014327 271 AQLTLLQR 278 (426)
Q Consensus 271 ~ql~~Lqr 278 (426)
..+..|..
T Consensus 32 ~~v~~l~~ 39 (171)
T 2zvf_A 32 KTVERFFE 39 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 252
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.69 E-value=1.2e+02 Score=27.78 Aligned_cols=33 Identities=27% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014327 249 MRYIAELERKVQTLQTEATSLSAQLTLLQRDTN 281 (426)
Q Consensus 249 kqyieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~ 281 (426)
+..+.+|..++..|+.+|..|..+.+....+..
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 253
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.33 E-value=1.7e+02 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 014327 280 TNGLTAENSELKLRLQTMEQQVHLQ 304 (426)
Q Consensus 280 ~~~L~sEN~eLK~rLqaLeQQ~qLr 304 (426)
...|..-|-.|-.+++.|+.++-..
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~ 37 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEK 37 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666555544
No 254
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.15 E-value=3.3e+02 Score=22.50 Aligned_cols=28 Identities=7% Similarity=0.155 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTLLQRDTN 281 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~ 281 (426)
.|++|+..|+.....|...+..++..+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444444444444333
No 255
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=21.86 E-value=4.1e+02 Score=23.39 Aligned_cols=9 Identities=44% Similarity=0.966 Sum_probs=4.4
Q ss_pred hhhhhhccc
Q 014327 120 EDLLSMYLD 128 (426)
Q Consensus 120 ~dlfs~y~d 128 (426)
-+.|-.|++
T Consensus 13 ~~~~w~Y~~ 21 (185)
T 3r2p_A 13 KDLATVYVD 21 (185)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 344555554
No 256
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.78 E-value=65 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 014327 282 GLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 282 ~L~sEN~eLK~rLqaLeQQ 300 (426)
.|..||++++.+|+.|+.+
T Consensus 159 ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 159 QLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 257
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.69 E-value=4.2e+02 Score=23.44 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=12.7
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHH
Q 014327 274 TLLQRDTNGLTAENSELKLRLQTMEQ 299 (426)
Q Consensus 274 ~~Lqrq~~~L~sEN~eLK~rLqaLeQ 299 (426)
..+.++..........+...++.++.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~ 94 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSS 94 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44444444444455555555554443
No 258
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.32 E-value=3.1e+02 Score=22.45 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHhHHHHHHHHHHHHHHHHHHHH
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRD-----TNGLTAENSELKLRLQTMEQQVH 302 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq-----~~~L~sEN~eLK~rLqaLeQQ~q 302 (426)
-|.+|+..++.......-|..-+..+... -..+..+..++..+|..|...+.
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665555555555444443321 22345555566666666655543
No 259
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=20.97 E-value=38 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014327 251 YIAELERKVQTLQTEATSLSAQLTLLQRD 279 (426)
Q Consensus 251 yieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq 279 (426)
.|+.|.+|++.|+.++..+..++..+++.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777776666543
No 260
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.81 E-value=3.7e+02 Score=22.42 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHhHHhHHHHHHHHHH
Q 014327 271 AQLTLLQRDTNGLTAENSELKL 292 (426)
Q Consensus 271 ~ql~~Lqrq~~~L~sEN~eLK~ 292 (426)
.....|-..+..|+.|...|..
T Consensus 49 e~~keLh~~I~~LEeEKYDlE~ 70 (106)
T 1j1d_B 49 EKAKELWQTIYNLEAEKFDLQE 70 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH
Confidence 3333333333444444444443
No 261
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.80 E-value=1.9e+02 Score=24.39 Aligned_cols=32 Identities=28% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 269 LSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 269 Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
|.+++.....++..|..+..+|+..+..|+.+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555556666777777777777654
No 262
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.55 E-value=58 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014327 248 KMRYIAELERKVQTLQTEATSL 269 (426)
Q Consensus 248 KkqyieeLE~kVq~Lq~ENs~L 269 (426)
+..||+.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5578999999998888665544
No 263
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.49 E-value=2.7e+02 Score=22.85 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH--hHHhHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQ-TLQTEATSLSAQLTLLQR--DTNGLTAENSELKLRLQTMEQQV 301 (426)
Q Consensus 254 eLE~kVq-~Lq~ENs~Ls~ql~~Lqr--q~~~L~sEN~eLK~rLqaLeQQ~ 301 (426)
+|..+|+ .|......|..++..|.. ....|..+-.+|...++.+..+.
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y 87 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSY 87 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555 444444444444442222 34455555555555555554443
No 264
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.36 E-value=1.3e+02 Score=29.42 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=5.8
Q ss_pred chhhhhhcccc
Q 014327 119 EEDLLSMYLDM 129 (426)
Q Consensus 119 ~~dlfs~y~d~ 129 (426)
|||+..++=++
T Consensus 70 eeev~~~lK~L 80 (315)
T 2ve7_A 70 EEEVPRIFKDL 80 (315)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 55555555444
No 265
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.27 E-value=5.1e+02 Score=23.85 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELK 291 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK 291 (426)
+.+|+.++..|+.+|..|...+..+..+...+..+..++.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777766666666666666655555555443
No 266
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.26 E-value=3.4e+02 Score=21.81 Aligned_cols=10 Identities=40% Similarity=0.571 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 014327 254 ELERKVQTLQ 263 (426)
Q Consensus 254 eLE~kVq~Lq 263 (426)
+|.-+|..|+
T Consensus 30 ~Lr~kv~elE 39 (81)
T 3qh9_A 30 HLKIKVEELE 39 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 267
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.24 E-value=4.3e+02 Score=23.02 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Q 014327 252 IAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQ 300 (426)
Q Consensus 252 ieeLE~kVq~Lq~ENs~Ls~ql~~Lqrq~~~L~sEN~eLK~rLqaLeQQ 300 (426)
+..|...+.....+...|...+..-+......+.++..+...|+.|...
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666667777777777777643
No 268
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.17 E-value=3.8e+02 Score=22.34 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 014327 241 AARSKERKMRYIAE 254 (426)
Q Consensus 241 A~RSReRKkqyiee 254 (426)
.+.-|+.|+.||++
T Consensus 19 ~q~e~EeKkkiLaE 32 (107)
T 1ytz_T 19 KQTARETKKKVLAE 32 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455667777775
No 269
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=20.01 E-value=3.9e+02 Score=22.40 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014327 254 ELERKVQTLQTEATSLSAQLTL-------LQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQ 316 (426)
Q Consensus 254 eLE~kVq~Lq~ENs~Ls~ql~~-------Lqrq~~~L~sEN~eLK~rLqaLeQQ~qLrdALnEaLk~EVq 316 (426)
+||.+...|..+.+.|..+|.. ....+..|.....+|...|..+...+---.-.+..|..+-.
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544433 33444455555555555555555555444444454544433
Done!