Query 014329
Match_columns 426
No_of_seqs 113 out of 789
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 98.9 7E-08 2.4E-12 96.8 18.1 348 47-421 39-403 (451)
2 3o7q_A L-fucose-proton symport 98.4 2.5E-05 8.6E-10 77.7 21.5 127 51-191 41-173 (438)
3 4aps_A DI-OR tripeptide H+ sym 97.8 0.00025 8.6E-09 71.8 14.6 58 364-421 385-442 (491)
4 2gfp_A EMRD, multidrug resista 97.5 0.00035 1.2E-08 68.1 10.3 318 50-418 14-343 (375)
5 4gc0_A D-xylose-proton symport 97.3 0.0059 2E-07 61.5 16.0 133 36-168 9-160 (491)
6 2xut_A Proton/peptide symporte 97.0 0.0039 1.3E-07 63.6 11.8 58 364-421 404-461 (524)
7 1pw4_A Glycerol-3-phosphate tr 94.0 0.19 6.4E-06 49.4 9.5 108 311-421 66-175 (451)
8 4aps_A DI-OR tripeptide H+ sym 92.4 0.66 2.3E-05 46.3 10.8 32 136-167 387-419 (491)
9 3o7q_A L-fucose-proton symport 92.2 0.22 7.5E-06 48.8 6.8 113 308-423 62-175 (438)
10 2cfq_A Lactose permease; trans 91.8 0.62 2.1E-05 45.9 9.7 77 81-169 270-347 (417)
11 2cfq_A Lactose permease; trans 91.6 0.54 1.8E-05 46.3 8.9 37 74-110 47-83 (417)
12 2xut_A Proton/peptide symporte 86.1 0.74 2.5E-05 46.4 5.4 105 310-420 57-167 (524)
13 4gc0_A D-xylose-proton symport 83.6 7.6 0.00026 38.3 11.5 43 75-117 317-359 (491)
14 2gfp_A EMRD, multidrug resista 77.5 2.3 8E-05 40.5 5.1 107 309-422 37-145 (375)
15 1q1s_A Large T antigen; import 42.3 11 0.00038 22.0 1.3 21 9-34 1-21 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.86 E-value=7e-08 Score=96.76 Aligned_cols=348 Identities=12% Similarity=0.080 Sum_probs=169.1
Q ss_pred hhhHHHHHHhchhHhhccccCCCccchhhHHHHHHHHHHHHHHHHHhhcCCCcceEehhHHHHHHHHHHHHhhhhheeec
Q 014329 47 GFLLPWNAFITAVDYFSYLYPEASVDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIK 126 (426)
Q Consensus 47 ~~L~pwN~~ita~dyf~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~s~~~Ri~~~l~~~~v~~i~i~~~~~~~~~ 126 (426)
...+.++.+....+++.+++-+......+...+.+...+.....-.+.+|+..|.-+..+.++..+..+........ .+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~ 117 (451)
T 1pw4_A 39 AYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TS 117 (451)
T ss_dssp HHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HS
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-cc
Confidence 33334444445556665555222233455566777777777777777888876655556666655555443321100 11
Q ss_pred ccCCcchhhHHHHHHHHHhhhhhhhhhhhhhhhccC-CCHH----HHHHHHhccccccccchhHHHHHHHHHHHHhcccC
Q 014329 127 GRVGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR----YMQALVAGTAGSALLSAGVLVSVLRILTKAVYTQD 201 (426)
Q Consensus 127 ~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~~la~~-fp~~----~~~a~~~G~g~a~~~~~Gv~~s~l~ii~~~~~~~~ 201 (426)
.++..++.-++.|++.+.......++.+. +|++ ..+-...+.+++ +++...+.-......+
T Consensus 118 -------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-----~~~g~~~~~~l~~~~g-- 183 (451)
T 1pw4_A 118 -------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG-----GGIPPLLFLLGMAWFN-- 183 (451)
T ss_dssp -------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH-----HTSHHHHHHHHHHHTC--
T ss_pred -------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhc--
Confidence 23345556778899888888888888764 6644 233444555555 4444443322111111
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhhhhhhhhccCCCCccccch--HHHHH--HHHHHHH
Q 014329 202 AIGLRKSANLYFAVGIVVMVICIVFYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSA--VWHIV--GRVKWYG 277 (426)
Q Consensus 202 ~~~~~~sa~~yF~i~~~~~~~~~~~~~~l~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~--k~i~~~~ 277 (426)
+-+. .|...+.+..+..++.+..+++.|..+...+.+..+.+++.+++.+.+++....+ .++++ |..|...
T Consensus 184 --~w~~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (451)
T 1pw4_A 184 --DWHA---ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIA 258 (451)
T ss_dssp --CSTT---CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHH
T ss_pred --cHHH---HHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHH
Confidence 1222 1222333333333333444444432211000000000000000000000011111 23333 3455555
Q ss_pred HHHHHHHhhh---hccccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhh-cc--cchhHHHHH-HHHHHHHh
Q 014329 278 FGILLIYIVT---LSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYL-LE--NEKVAIGGC-FARLLFFP 350 (426)
Q Consensus 278 l~~fl~f~vT---l~vFP~i~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~-~~--~~~~l~~~s-~~R~~fiP 350 (426)
+..++..+.. ...+|.+..+ ....+....-.....+.++..+|+.+..+.. +. ++|+.+... .+-. .+-
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~-~~~ 334 (451)
T 1pw4_A 259 IANVFVYLLRYGILDWSPTYLKE---VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV-TIA 334 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBTT---BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHH
Confidence 5555444432 2233433221 1112233334567788899999998875543 22 444433222 2111 111
Q ss_pred hhhccccCCCccccchhHHHHHHHHhhhcchhhhheeeecCCCCChhhHHHHhHHHHHHHHH-HHHHHHHHH
Q 014329 351 LFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVL-GLAAGSIVA 421 (426)
Q Consensus 351 lf~~c~~~p~~~~~d~~~~il~~lfglTnGyl~t~~mi~ap~~v~~~ere~ag~~~~~~l~~-Gl~~Gs~~s 421 (426)
+.++... +. .+.+...+..+++|+..|........+..+..++++|..+-.+......+ |..+|..+.
T Consensus 335 ~~~~~~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 335 TIVYWMN-PA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHTTSC-CT--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-cc--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 11 23355667777888887777777667777788888888888888887777 877776553
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.42 E-value=2.5e-05 Score=77.73 Aligned_cols=127 Identities=9% Similarity=0.010 Sum_probs=77.9
Q ss_pred HHHHHhchhHhhccccCCCcc-chhhHHHHHHHHHHHHHHHHHhhcCCCcceEehhHHHHHHHHHHHHhhhhheeecccC
Q 014329 51 PWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRV 129 (426)
Q Consensus 51 pwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~s~~~Ri~~~l~~~~v~~i~i~~~~~~~~~~~~ 129 (426)
.++.+-...+++++.+.-++. ...+...+.+...+.....-.+.+|+..|.-+..+.++..+..+....... .
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~---- 114 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--I---- 114 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--T----
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--c----
Confidence 344444556667776654332 234455666677777777777788888776666777766665554321111 1
Q ss_pred CcchhhHHHHHHHHHhhhhhhhhhhhhhhhcc-CCCHHH----HHHHHhccccccccchhHHHHHHH
Q 014329 130 GLYDGFTVTVGAVALSGLADALVQGGLIGAAG-ELPDRY----MQALVAGTAGSALLSAGVLVSVLR 191 (426)
Q Consensus 130 ~~~~~f~~~l~~v~~~g~~~~~~q~s~~~la~-~fp~~~----~~a~~~G~g~a~~~~~Gv~~s~l~ 191 (426)
..++..++.-++.|++.+..+....++.+ .+|++. ++-...+.+++ +++...+.
T Consensus 115 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-----~~~g~~~~ 173 (438)
T 3o7q_A 115 ---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG-----AIIAVVFG 173 (438)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHH-----HHHHHHHT
T ss_pred ---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 13455566778899999999988888877 467544 44555566666 55555443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.80 E-value=0.00025 Score=71.81 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHhhhcchhhhheeeecCCCCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014329 364 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 421 (426)
Q Consensus 364 ~d~~~~il~~lfglTnGyl~t~~mi~ap~~v~~~ere~ag~~~~~~l~~Gl~~Gs~~s 421 (426)
+.+...+..+++|+..|......+.+..+..++++|..+..+......+|..+|..+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788889999888888888888888888898888888888888888887664
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.52 E-value=0.00035 Score=68.13 Aligned_cols=318 Identities=13% Similarity=-0.000 Sum_probs=154.7
Q ss_pred HHHHHHhchhHhhccccCCCcc-chhhHHHHHHHHHHHHHHHHHhhcCCCcceEehhHHHHHHHHHHHHhhhhheeeccc
Q 014329 50 LPWNAFITAVDYFSYLYPEASV-DRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGR 128 (426)
Q Consensus 50 ~pwN~~ita~dyf~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~s~~~Ri~~~l~~~~v~~i~i~~~~~~~~~~~ 128 (426)
+.++.+....+.+.+++.-++. .......+.+...+.....-.+.+|...|.-+..+..+..+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 4455555555656655543322 3345566777777777777788899887777777777766666544321
Q ss_pred CCcchhhHHHHHHHHHhhhhhhhhhhhhhhhccC-CCHH----HHHHHHhccccccccchhHHHHHHHHHHHHhcccCcc
Q 014329 129 VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDR----YMQALVAGTAGSALLSAGVLVSVLRILTKAVYTQDAI 203 (426)
Q Consensus 129 ~~~~~~f~~~l~~v~~~g~~~~~~q~s~~~la~~-fp~~----~~~a~~~G~g~a~~~~~Gv~~s~l~ii~~~~~~~~~~ 203 (426)
..++..++..++.|++.+..+....++.+. +|++ ..+....+.+++ +++...+.-. ..+ ..
T Consensus 86 ----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~---l~~--~~ 151 (375)
T 2gfp_A 86 ----SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVS-----PLLAPLIGGL---LDT--MW 151 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHH-----HHHHHHHHHH---SSC--HH
T ss_pred ----ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHH-----HHhhHHHHHH---HHH--hc
Confidence 134445566777888888888777777664 3322 355555566666 5554443322 111 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHH-HHHHhhcchhhHHHHhhhhhhhhhhhhhccCCCCccccchHHHHH--HHHHHHHHHH
Q 014329 204 GLRKSANLYFAVGIVVMVICIV-FYNVAHRLPVIKYHEDLKIQAVNEEKEEKGSLTGSMWRSAVWHIV--GRVKWYGFGI 280 (426)
Q Consensus 204 ~~~~sa~~yF~i~~~~~~~~~~-~~~~l~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--k~i~~~~l~~ 280 (426)
+ + ..-|.+..++.+++.+ .+..+++.| .+ ++ +++ +.+++.++++ |+.|...+..
T Consensus 152 ~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~-~~~------~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 152 N--W--RACYLFLLVLCAGVTFSMARWMPETR---------PV---DA-PRT------RLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp H--H--HHHHHHHHHHHHHHHCCCCCSSCCCS---------TT---TC-CCC------CTTTCSTHHHHHHHHHHHHHHH
T ss_pred c--H--HHHHHHHHHHHHHHHHHHHHHCcccC---------CC---Cc-ccc------cHHHHHHHHhcCcchHHHHHHH
Confidence 1 1 1122222222222222 111111111 00 00 000 0111222333 3455555555
Q ss_pred HHHHhhh---hccccceeeecccccCCCchHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHHHHHHhhhhcccc
Q 014329 281 LLIYIVT---LSIFPGYITEDVHSEILKDWYGIILIAGYNVFDLVGKSLTAIYLLENEKVAIGGCFARLLFFPLFLGCLH 357 (426)
Q Consensus 281 fl~f~vT---l~vFP~i~~~~~~~~~~~~w~~~~~~~~FnvgD~iGR~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~c~~ 357 (426)
++.++.. ....|-+..+..+ .++...-.....+.++..+|+.+..+...+..++....... ....-+.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~-~~~~~~~~~~~~ 284 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLG---LSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVIC-CLLAGLLMWIPD 284 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHH-HHHTSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 5444332 2233433221011 11122234566777888899887655432111111111110 011111110000
Q ss_pred CCCccccchhHHHHHHHHhhhcchhhhheeeecCCCCChhhHHHHhHHHHHHHHHHHHHHH
Q 014329 358 GPKFFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGS 418 (426)
Q Consensus 358 ~p~~~~~d~~~~il~~lfglTnGyl~t~~mi~ap~~v~~~ere~ag~~~~~~l~~Gl~~Gs 418 (426)
. ..-++.+..++..+++|+..|........+..+..+ |+|..+..+....-.+|-.+|.
T Consensus 285 ~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~ 343 (375)
T 2gfp_A 285 W-FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA 343 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred h-hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence 0 000233445567778888888877777777776665 6777777776666666655443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.25 E-value=0.0059 Score=61.51 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=70.5
Q ss_pred hhhHHHHHHhhhh-hHHHHHHhc--hhHhhccccCCCc---------cchhhHHHHHHHHHHHHHHHHHhhcCCCcceEe
Q 014329 36 LAYIIYFTLGLGF-LLPWNAFIT--AVDYFSYLYPEAS---------VDRIFAVAYMLVGLFCLVIIVFYAHKSDAWVRI 103 (426)
Q Consensus 36 ~~y~~f~llGi~~-L~pwN~~it--a~dyf~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~s~~~Ri 103 (426)
.+|.+.++..+|. +..|+.-+. +.+++++.|...+ ....+...+.+...+..++.-.+.+|+..|.=+
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4444444445544 456665432 4566655442211 112344556777777777777777777766556
Q ss_pred hhHHHHHHHHHHHHhhhhheee--ccc----CCcchhhHHHHHHHHHhhhhhhhhhhhhhhhccC-CCHHHH
Q 014329 104 NVGLGLFVVALLVVPVMDAVYI--KGR----VGLYDGFTVTVGAVALSGLADALVQGGLIGAAGE-LPDRYM 168 (426)
Q Consensus 104 ~~~l~~~~v~~i~i~~~~~~~~--~~~----~~~~~~f~~~l~~v~~~g~~~~~~q~s~~~la~~-fp~~~~ 168 (426)
..+.+++.+..+.......... ... ......+...++.=++.|++.|........+.+- .|++.-
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~r 160 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence 6666666555443221100000 000 0001234445566778888888888888887774 566543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.00 E-value=0.0039 Score=63.56 Aligned_cols=58 Identities=12% Similarity=-0.061 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHhhhcchhhhheeeecCCCCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014329 364 TEIPVTLLTCLLGLTNGYLTSVLMILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 421 (426)
Q Consensus 364 ~d~~~~il~~lfglTnGyl~t~~mi~ap~~v~~~ere~ag~~~~~~l~~Gl~~Gs~~s 421 (426)
+.++.++..+++|+..|......+.+..+..++++|..+..+......+|-.+|..+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~ 461 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN 461 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667788889999988888888887888888888887777777777777776654
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.97 E-value=0.19 Score=49.41 Aligned_cols=108 Identities=11% Similarity=-0.060 Sum_probs=70.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhh-cccchhHHH-HHHHHHHHHhhhhccccCCCccccchhHHHHHHHHhhhcchhhhheee
Q 014329 311 ILIAGYNVFDLVGKSLTAIYL-LENEKVAIG-GCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVLMI 388 (426)
Q Consensus 311 ~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~-~s~~R~~fiPlf~~c~~~p~~~~~d~~~~il~~lfglTnGyl~t~~mi 388 (426)
++...+.++..++..+..+.. +..+|+.+. ..++..+...+.... |..-++.+..++..++.|+..|........
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~ 142 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV---PWATSSIAVMFVLLFLCGWFQGMGWPPCGR 142 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---HHHHSSSSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh---hhccccHHHHHHHHHHHHHHhhhccchHHH
Confidence 456677788888776654432 344555433 223222221111110 000123355677788899999988888888
Q ss_pred ecCCCCChhhHHHHhHHHHHHHHHHHHHHHHHH
Q 014329 389 LAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVA 421 (426)
Q Consensus 389 ~ap~~v~~~ere~ag~~~~~~l~~Gl~~Gs~~s 421 (426)
+.++..++++|..+..+......+|..+|..++
T Consensus 143 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 143 TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999988887776
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=92.43 E-value=0.66 Score=46.27 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcc-CCCHHH
Q 014329 136 TVTVGAVALSGLADALVQGGLIGAAG-ELPDRY 167 (426)
Q Consensus 136 ~~~l~~v~~~g~~~~~~q~s~~~la~-~fp~~~ 167 (426)
+...+..++.|++.+........+.. ..|++.
T Consensus 387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 419 (491)
T 4aps_A 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 34445566777777776666666665 466664
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.23 E-value=0.22 Score=48.80 Aligned_cols=113 Identities=7% Similarity=-0.090 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhh-cccchhHHHHHHHHHHHHhhhhccccCCCccccchhHHHHHHHHhhhcchhhhhe
Q 014329 308 YGIILIAGYNVFDLVGKSLTAIYL-LENEKVAIGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 386 (426)
Q Consensus 308 ~~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l~~~s~~R~~fiPlf~~c~~~p~~~~~d~~~~il~~lfglTnGyl~t~~ 386 (426)
..-++...+.++..++..+..+.. +..+|+.+.... ++.....+.+.. ..+.++.+..++..++.|+..|-.....
T Consensus 62 ~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 62 QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALGAALFWP-AAEIMNYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH--HHHHHHHHHHHh-ccccccHHHHHHHHHHHHhhHHHhhhhH
Confidence 344567788888888877754433 345555443332 111111111100 0012344566777889999999888888
Q ss_pred eeecCCCCChhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014329 387 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAWF 423 (426)
Q Consensus 387 mi~ap~~v~~~ere~ag~~~~~~l~~Gl~~Gs~~s~~ 423 (426)
..+..+..++++|..+..+...+..+|..+|..++-.
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888898999998888899999998888876543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.84 E-value=0.62 Score=45.85 Aligned_cols=77 Identities=8% Similarity=0.003 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhcCCCcceEehhHHHHHHHHHHHHhhhhheeecccCCcchhhHHHHHHHHHhhhhhhhhhhhhhhhc
Q 014329 81 LVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVVPVMDAVYIKGRVGLYDGFTVTVGAVALSGLADALVQGGLIGAA 160 (426)
Q Consensus 81 ~~~l~~~l~~~~~~~~~s~~~Ri~~~l~~~~v~~i~i~~~~~~~~~~~~~~~~~f~~~l~~v~~~g~~~~~~q~s~~~la 160 (426)
+...+..++.-++.+|+..+..+..+..+..+.++.... .+ . .+..++...+.+++.+..+.....+.
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----AT----S---ALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CC----S---HHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hc----c---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566677776554444455444443332211 11 1 11122233334444555555555555
Q ss_pred c-CCCHHHHH
Q 014329 161 G-ELPDRYMQ 169 (426)
Q Consensus 161 ~-~fp~~~~~ 169 (426)
+ .+|++..+
T Consensus 338 ~~~~p~~~~g 347 (417)
T 2cfq_A 338 TSQFEVRFSA 347 (417)
T ss_dssp HHHSCHHHHH
T ss_pred HHHCCHHHHH
Confidence 5 57877553
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.61 E-value=0.54 Score=46.32 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCcceEehhHHHHH
Q 014329 74 IFAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLF 110 (426)
Q Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~~s~~~Ri~~~l~~~ 110 (426)
.....+.+...+.+...-.+.+|+..|..+..+..+.
T Consensus 47 ~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~ 83 (417)
T 2cfq_A 47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344556667777777777788888766555555443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=86.10 E-value=0.74 Score=46.40 Aligned_cols=105 Identities=8% Similarity=-0.125 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-cc-cchhHHHH-HHHHHHHHhhhhccccCCCccccchhHHHHHHHHhhhcchhhhhe
Q 014329 310 IILIAGYNVFDLVGKSLTAIYL-LE-NEKVAIGG-CFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 386 (426)
Q Consensus 310 ~~~~~~FnvgD~iGR~~~~~~~-~~-~~~~l~~~-s~~R~~fiPlf~~c~~~p~~~~~d~~~~il~~lfglTnGyl~t~~ 386 (426)
-.....+.++..+|.....+.. +. .+|+.+.. .++..+.. +.+...+ .+.+..++..++.|+..|-.....
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH---AFLAIFE---HSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH---HHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---HHHHHhc---ccHHHHHHHHHHHHHhccccchhH
Confidence 3456677888888877654433 34 55554433 22222221 1111111 133556677788899999888888
Q ss_pred eeecCCCCChhhHHHHhHH---HHHHHHHHHHHHHHH
Q 014329 387 MILAPKVVQLQHAETAGIV---IVLFLVLGLAAGSIV 420 (426)
Q Consensus 387 mi~ap~~v~~~ere~ag~~---~~~~l~~Gl~~Gs~~ 420 (426)
..+.++..++++|..+... ......+|..+|..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~ 167 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS 167 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888766655 566666777666654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=83.59 E-value=7.6 Score=38.26 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCcceEehhHHHHHHHHHHHH
Q 014329 75 FAVAYMLVGLFCLVIIVFYAHKSDAWVRINVGLGLFVVALLVV 117 (426)
Q Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~s~~~Ri~~~l~~~~v~~i~i 117 (426)
.+....+..+...++...+.+|+..|.....+.....++++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence 3444555666666666666777766666666666666655544
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=77.46 E-value=2.3 Score=40.46 Aligned_cols=107 Identities=7% Similarity=0.011 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh-cccchhH-HHHHHHHHHHHhhhhccccCCCccccchhHHHHHHHHhhhcchhhhhe
Q 014329 309 GIILIAGYNVFDLVGKSLTAIYL-LENEKVA-IGGCFARLLFFPLFLGCLHGPKFFRTEIPVTLLTCLLGLTNGYLTSVL 386 (426)
Q Consensus 309 ~~~~~~~FnvgD~iGR~~~~~~~-~~~~~~l-~~~s~~R~~fiPlf~~c~~~p~~~~~d~~~~il~~lfglTnGyl~t~~ 386 (426)
.-.....+.++..+++....+.. +.++|+. ....+...+...+... .++.+..++..++.|+..|......
T Consensus 37 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 37 VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-------TSSLTVLIAASAMQGMGTGVGGVMA 109 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHHhhhhhH
Confidence 34567788888888887765433 3344443 3333333322222211 1233456677778899888887777
Q ss_pred eeecCCCCChhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 014329 387 MILAPKVVQLQHAETAGIVIVLFLVLGLAAGSIVAW 422 (426)
Q Consensus 387 mi~ap~~v~~~ere~ag~~~~~~l~~Gl~~Gs~~s~ 422 (426)
..+.++..++|+|..+..+......+|..+|..++-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 777777667778888888888888888888877654
No 15
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=42.28 E-value=11 Score=21.95 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=12.1
Q ss_pred CCCCcccccccCCCcccCCCCCCCCc
Q 014329 9 PGSESESSLLLGNSITVHQKPPPDTF 34 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~p~d~~ 34 (426)
+|||+|+.-|- .+..|||.++
T Consensus 1 ~~sdde~~ads-----~~sTPPKkKr 21 (26)
T 1q1s_A 1 PGSDDEAAADA-----QHAAPPKKKR 21 (26)
T ss_pred Ccccccccccc-----cccCCCcccc
Confidence 68899776543 3344555443
Done!