Query 014330
Match_columns 426
No_of_seqs 127 out of 1295
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 3.5E-56 7.5E-61 416.9 31.8 384 30-421 43-449 (449)
2 PTZ00206 amino acid transporte 100.0 2E-55 4.3E-60 432.2 28.7 384 32-422 58-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.1E-53 4.5E-58 405.7 27.4 394 26-424 30-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 2.3E-51 4.9E-56 402.1 2.3 379 32-418 1-408 (409)
5 PLN03074 auxin influx permease 100.0 1.9E-47 4.1E-52 373.7 26.5 385 30-425 42-455 (473)
6 KOG1305 Amino acid transporter 100.0 2.1E-43 4.6E-48 335.6 20.3 387 30-426 2-410 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.5E-42 3.3E-47 306.2 5.6 385 29-423 112-516 (524)
8 COG0814 SdaC Amino acid permea 100.0 8.6E-32 1.9E-36 259.9 25.7 378 29-418 4-412 (415)
9 PRK10483 tryptophan permease; 100.0 3.7E-27 8E-32 223.8 26.0 372 29-414 6-403 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 100.0 5.4E-27 1.2E-31 225.1 26.3 366 32-411 1-392 (394)
11 PRK15132 tyrosine transporter 100.0 8.4E-27 1.8E-31 222.5 23.6 363 35-414 4-392 (403)
12 PRK09664 tryptophan permease T 100.0 1.9E-26 4.1E-31 218.7 25.4 372 30-414 5-404 (415)
13 TIGR00837 araaP aromatic amino 99.9 8.6E-27 1.9E-31 225.7 19.9 336 40-389 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 1.3E-21 2.9E-26 185.7 25.3 365 40-416 25-441 (443)
15 TIGR00814 stp serine transport 99.9 1.6E-21 3.4E-26 187.0 21.1 338 38-388 7-378 (397)
16 TIGR00912 2A0309 spore germina 99.8 7E-17 1.5E-21 155.2 21.4 335 32-387 1-352 (359)
17 PRK10655 potE putrescine trans 99.8 5.9E-16 1.3E-20 152.8 27.8 240 29-283 3-247 (438)
18 TIGR03810 arg_ornith_anti argi 99.7 1.2E-15 2.7E-20 151.5 27.7 344 32-390 1-381 (468)
19 TIGR00909 2A0306 amino acid tr 99.7 7.2E-16 1.6E-20 151.9 25.5 348 31-389 2-376 (429)
20 PRK10435 cadB lysine/cadaverin 99.7 1.5E-15 3.2E-20 149.6 27.5 240 29-285 2-247 (435)
21 PRK15049 L-asparagine permease 99.7 3.6E-15 7.8E-20 148.8 28.1 342 29-389 25-406 (499)
22 PRK11021 putative transporter; 99.7 8.1E-15 1.8E-19 143.4 29.1 336 34-390 1-363 (410)
23 TIGR00905 2A0302 transporter, 99.7 4.4E-15 9.6E-20 147.8 27.2 348 29-390 4-385 (473)
24 PRK10249 phenylalanine transpo 99.7 5.7E-15 1.2E-19 146.2 27.6 338 29-388 18-394 (458)
25 PRK10644 arginine:agmatin anti 99.7 6.9E-15 1.5E-19 145.4 27.7 241 29-285 5-251 (445)
26 PRK11387 S-methylmethionine tr 99.7 1.1E-14 2.4E-19 144.9 28.1 287 29-333 11-321 (471)
27 PRK10746 putative transport pr 99.7 1.3E-14 2.8E-19 143.6 28.4 342 29-389 7-388 (461)
28 PRK11049 D-alanine/D-serine/gl 99.7 1.2E-14 2.5E-19 144.5 27.4 342 28-389 16-399 (469)
29 KOG1287 Amino acid transporter 99.7 7.7E-16 1.7E-20 146.7 17.8 353 29-394 9-391 (479)
30 TIGR01773 GABAperm gamma-amino 99.7 1.9E-14 4.2E-19 142.6 28.7 286 29-333 9-317 (452)
31 COG1113 AnsP Gamma-aminobutyra 99.7 2.9E-15 6.3E-20 140.5 19.8 339 29-388 10-388 (462)
32 TIGR00906 2A0303 cationic amin 99.7 2.3E-14 4.9E-19 144.6 26.6 348 29-388 25-410 (557)
33 PRK10238 aromatic amino acid t 99.7 7.1E-14 1.5E-18 138.4 27.6 340 29-389 9-386 (456)
34 PRK10836 lysine transporter; P 99.7 1E-13 2.2E-18 138.6 28.1 287 29-333 12-328 (489)
35 TIGR00913 2A0310 amino acid pe 99.6 2E-13 4.4E-18 136.3 28.8 339 31-388 1-391 (478)
36 PRK10580 proY putative proline 99.6 3E-13 6.5E-18 134.2 29.6 339 29-389 6-385 (457)
37 TIGR00930 2a30 K-Cl cotranspor 99.6 1.5E-13 3.2E-18 145.1 27.6 245 29-281 73-336 (953)
38 TIGR00908 2A0305 ethanolamine 99.6 2.3E-13 5E-18 134.5 27.1 233 29-279 4-245 (442)
39 PF13520 AA_permease_2: Amino 99.6 1.5E-13 3.2E-18 135.4 25.4 341 34-392 1-378 (426)
40 TIGR00911 2A0308 L-type amino 99.6 1.8E-13 3.9E-18 137.4 25.2 245 28-285 38-295 (501)
41 PRK11357 frlA putative fructos 99.6 4.1E-13 9E-18 132.8 26.2 239 29-283 5-253 (445)
42 PRK10197 gamma-aminobutyrate t 99.6 4.2E-13 9.1E-18 132.5 25.3 324 43-388 3-367 (446)
43 PF03845 Spore_permease: Spore 99.6 1.5E-13 3.3E-18 129.8 20.1 286 33-338 1-298 (320)
44 COG0833 LysP Amino acid transp 99.6 5.6E-12 1.2E-16 121.2 27.9 340 30-388 42-427 (541)
45 COG0531 PotE Amino acid transp 99.5 2.1E-11 4.6E-16 121.6 26.4 348 29-389 9-389 (466)
46 KOG1286 Amino acid transporter 99.5 2.1E-12 4.6E-17 128.0 18.1 346 28-388 26-422 (554)
47 TIGR03428 ureacarb_perm permea 99.4 9.1E-10 2E-14 109.9 28.2 250 29-285 10-273 (475)
48 TIGR00907 2A0304 amino acid pe 99.3 8.2E-10 1.8E-14 110.5 26.7 243 29-279 9-271 (482)
49 PRK15238 inner membrane transp 99.3 5E-09 1.1E-13 105.1 27.7 244 29-282 4-268 (496)
50 KOG3832 Predicted amino acid t 99.3 1.3E-10 2.8E-15 96.9 13.3 225 32-257 10-304 (319)
51 PF00324 AA_permease: Amino ac 99.3 4.2E-11 9.1E-16 119.6 12.5 274 43-329 6-316 (478)
52 TIGR03813 put_Glu_GABA_T putat 99.2 7.3E-09 1.6E-13 103.4 28.0 240 33-286 2-255 (474)
53 TIGR00910 2A0307_GadC glutamat 99.2 8.2E-09 1.8E-13 103.5 25.8 229 31-278 3-247 (507)
54 COG3949 Uncharacterized membra 98.9 5.6E-07 1.2E-11 81.6 21.6 226 38-285 7-238 (349)
55 KOG1289 Amino acid transporter 98.7 1.4E-06 3.1E-11 84.3 19.0 253 29-289 45-316 (550)
56 COG1457 CodB Purine-cytosine p 98.6 3.2E-05 7E-10 74.5 23.9 249 106-371 85-344 (442)
57 TIGR02358 thia_cytX probable h 98.6 2.1E-05 4.6E-10 76.1 22.5 268 38-334 9-278 (386)
58 TIGR00800 ncs1 NCS1 nucleoside 98.6 3.2E-05 6.8E-10 76.5 24.2 297 30-334 10-329 (442)
59 PRK11375 allantoin permease; P 98.5 8.2E-05 1.8E-09 74.1 25.5 334 29-376 22-390 (484)
60 TIGR00796 livcs branched-chain 98.3 0.0003 6.5E-09 67.3 23.8 312 42-384 3-345 (378)
61 PF00474 SSF: Sodium:solute sy 98.3 0.00025 5.4E-09 69.5 22.6 147 31-197 5-154 (406)
62 PRK11017 codB cytosine permeas 98.2 0.00021 4.4E-09 69.8 20.8 284 62-372 39-326 (404)
63 PRK12488 acetate permease; Pro 98.2 0.005 1.1E-07 62.6 30.0 148 30-198 65-215 (549)
64 TIGR02119 panF sodium/pantothe 98.2 0.0028 6.1E-08 63.3 27.7 238 30-283 38-293 (471)
65 TIGR02711 symport_actP cation/ 98.2 0.0063 1.4E-07 61.9 30.1 144 31-195 66-212 (549)
66 PRK09442 panF sodium/panthothe 98.1 0.0066 1.4E-07 60.8 29.0 147 30-195 39-190 (483)
67 TIGR00813 sss transporter, SSS 98.0 0.0039 8.5E-08 61.1 25.5 147 31-197 2-150 (407)
68 PF02133 Transp_cyt_pur: Perme 98.0 5.7E-05 1.2E-09 74.8 11.0 338 29-377 4-366 (440)
69 TIGR00835 agcS amino acid carr 97.9 0.0042 9.2E-08 60.1 22.4 306 31-355 44-387 (425)
70 PRK09395 actP acetate permease 97.9 0.027 5.8E-07 57.4 29.3 144 30-193 67-212 (551)
71 COG0591 PutP Na+/proline sympo 97.8 0.021 4.6E-07 57.2 25.3 115 30-148 36-152 (493)
72 COG4147 DhlC Predicted symport 97.7 0.051 1.1E-06 52.4 25.2 277 99-389 101-442 (529)
73 KOG1288 Amino acid transporter 97.7 0.0029 6.3E-08 63.0 17.5 108 227-334 295-404 (945)
74 TIGR03648 Na_symport_lg probab 97.6 0.11 2.3E-06 53.1 28.6 144 30-193 30-175 (552)
75 COG1953 FUI1 Cytosine/uracil/t 97.6 0.074 1.6E-06 52.0 24.6 233 99-335 100-358 (497)
76 PRK00701 manganese transport p 97.5 0.1 2.3E-06 51.3 25.9 48 100-147 92-139 (439)
77 PF02554 CstA: Carbon starvati 97.5 0.0055 1.2E-07 57.3 15.7 106 34-145 52-157 (376)
78 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.11 2.5E-06 50.3 29.2 304 101-416 76-410 (416)
79 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.15 3.2E-06 51.2 28.1 151 30-195 34-188 (487)
80 PRK15419 proline:sodium sympor 97.4 0.2 4.3E-06 50.5 29.2 151 30-196 38-193 (502)
81 COG0733 Na+-dependent transpor 97.3 0.094 2E-06 50.6 21.2 302 30-338 5-341 (439)
82 KOG2083 Na+/K+ symporter [Inor 96.9 0.0073 1.6E-07 59.5 9.9 234 29-276 25-274 (643)
83 PF01566 Nramp: Natural resist 96.6 0.57 1.2E-05 45.0 21.0 48 100-147 40-87 (358)
84 PF01235 Na_Ala_symp: Sodium:a 96.6 0.37 8.1E-06 46.7 19.1 309 29-355 14-361 (416)
85 PRK10484 putative transporter; 96.6 1.1 2.3E-05 45.6 27.9 90 30-127 36-126 (523)
86 PF00209 SNF: Sodium:neurotran 96.4 0.75 1.6E-05 46.7 21.0 103 176-278 192-302 (523)
87 PRK15015 carbon starvation pro 96.3 0.06 1.3E-06 54.1 12.4 101 37-143 86-186 (701)
88 PF05525 Branch_AA_trans: Bran 95.6 2.5 5.4E-05 41.3 21.2 316 37-386 6-353 (427)
89 COG1966 CstA Carbon starvation 95.5 0.24 5.2E-06 48.9 12.3 104 34-143 52-155 (575)
90 KOG2082 K+/Cl- cotransporter K 94.8 5.8 0.00013 41.0 20.1 111 33-148 114-226 (1075)
91 COG1115 AlsT Na+/alanine sympo 92.7 10 0.00023 36.9 20.3 321 29-366 58-417 (452)
92 PF05525 Branch_AA_trans: Bran 92.7 0.57 1.2E-05 45.6 8.4 102 42-149 204-308 (427)
93 TIGR00796 livcs branched-chain 92.6 0.77 1.7E-05 44.2 9.2 50 100-149 253-302 (378)
94 KOG2349 Na+:iodide/myo-inosito 90.2 2.3 5.1E-05 42.9 9.9 232 31-283 44-297 (585)
95 COG1114 BrnQ Branched-chain am 89.3 3.8 8.2E-05 39.4 10.1 101 43-149 207-310 (431)
96 TIGR01197 nramp NRAMP (natural 87.0 31 0.00067 33.5 23.0 49 100-148 62-110 (390)
97 PF02028 BCCT: BCCT family tra 86.3 39 0.00084 33.9 21.6 120 28-148 69-207 (485)
98 PRK15433 branched-chain amino 81.6 5.7 0.00012 38.9 7.4 85 58-148 227-311 (439)
99 KOG2466 Uridine permease/thiam 81.6 58 0.0013 32.3 14.4 291 29-333 51-376 (572)
100 PHA02764 hypothetical protein; 79.6 54 0.0012 30.6 20.3 92 31-130 11-105 (399)
101 KOG1289 Amino acid transporter 77.7 17 0.00037 36.3 9.3 50 100-149 323-372 (550)
102 PRK15433 branched-chain amino 68.5 1.3E+02 0.0028 29.8 19.6 150 227-386 195-356 (439)
103 PLN00151 potassium transporter 65.5 1.8E+02 0.0038 31.2 13.6 131 228-362 346-495 (852)
104 PLN02680 carbon-monoxide oxyge 64.4 95 0.0021 27.6 10.1 97 220-324 45-143 (232)
105 KOG3659 Sodium-neurotransmitte 63.1 1.3E+02 0.0029 30.7 11.8 88 34-129 82-174 (629)
106 PF05805 L6_membrane: L6 membr 62.3 22 0.00048 30.5 5.6 62 362-423 46-117 (195)
107 COG4145 PanF Na+/panthothenate 53.9 2.1E+02 0.0046 27.6 25.7 114 31-148 38-153 (473)
108 PRK03356 L-carnitine/gamma-but 51.6 2.3E+02 0.005 28.7 11.6 115 29-144 81-216 (504)
109 CHL00182 tatC Sec-independent 48.7 1.9E+02 0.0042 26.1 9.7 38 299-336 76-113 (249)
110 COG0534 NorM Na+-driven multid 48.2 1.6E+02 0.0034 29.4 10.0 127 252-384 86-215 (455)
111 TIGR00945 tatC Twin arginine t 47.7 2E+02 0.0042 25.3 9.6 41 298-338 54-94 (215)
112 TIGR00842 bcct choline/carniti 47.4 3E+02 0.0065 27.4 20.3 116 29-145 32-167 (453)
113 PRK09598 lipid A phosphoethano 40.3 1.2E+02 0.0026 30.9 7.8 27 371-397 126-152 (522)
114 PRK01766 multidrug efflux prot 38.7 1.6E+02 0.0035 29.1 8.5 29 252-280 308-336 (456)
115 PRK15065 PTS system mannose-sp 36.9 1.1E+02 0.0023 27.9 6.2 61 253-313 131-194 (262)
116 TIGR01912 TatC-Arch Twin argin 36.5 3.1E+02 0.0068 24.5 10.3 40 298-337 62-101 (237)
117 PF02705 K_trans: K+ potassium 36.3 4.8E+02 0.01 26.6 13.8 156 227-387 202-376 (534)
118 PRK10921 twin-arginine protein 34.5 3.6E+02 0.0077 24.5 9.4 38 299-336 66-103 (258)
119 PRK11598 putative metal depend 34.5 1.7E+02 0.0037 29.9 7.8 13 376-388 131-143 (545)
120 PF04835 Pox_A9: A9 protein co 34.3 94 0.002 20.4 3.8 33 256-289 20-52 (54)
121 PRK04949 putative sulfate tran 33.6 3.6E+02 0.0079 24.4 9.1 35 250-285 19-53 (251)
122 TIGR00909 2A0306 amino acid tr 32.9 4.7E+02 0.01 25.4 13.5 48 102-149 264-311 (429)
123 PRK13183 psbN photosystem II r 32.9 51 0.0011 20.9 2.4 29 259-287 5-33 (46)
124 KOG1291 Mn2+ and Fe2+ transpor 32.5 5.2E+02 0.011 25.8 20.7 132 101-243 88-224 (503)
125 TIGR00907 2A0304 amino acid pe 30.0 5.6E+02 0.012 25.5 14.3 48 102-149 289-337 (482)
126 CHL00020 psbN photosystem II p 29.6 44 0.00096 20.8 1.7 27 261-287 4-30 (43)
127 cd08765 Cyt_b561_CYBRD1 Verteb 27.0 3.6E+02 0.0079 22.3 7.7 67 255-324 43-111 (153)
128 PF07954 DUF1689: Protein of u 27.0 1E+02 0.0022 25.5 3.9 57 366-422 35-92 (152)
129 COG0534 NorM Na+-driven multid 26.6 4.7E+02 0.01 25.9 9.5 30 252-281 310-339 (455)
130 PF02468 PsbN: Photosystem II 26.5 69 0.0015 20.0 2.2 27 261-287 4-30 (43)
131 PF08019 DUF1705: Domain of un 26.2 2.8E+02 0.0062 22.8 6.7 24 372-395 72-95 (156)
132 TIGR03750 conj_TIGR03750 conju 25.7 3.2E+02 0.0069 21.2 8.3 57 32-88 16-73 (111)
133 TIGR02230 ATPase_gene1 F0F1-AT 25.7 1.7E+02 0.0036 22.3 4.6 43 374-416 50-94 (100)
134 PRK09575 vmrA multidrug efflux 25.6 4.3E+02 0.0093 26.1 9.0 21 363-383 188-208 (453)
135 COG3817 Predicted membrane pro 25.2 5.1E+02 0.011 23.4 9.5 28 396-423 168-195 (313)
136 PF03609 EII-Sor: PTS system s 23.8 3E+02 0.0065 24.7 6.7 60 253-312 131-193 (238)
137 PRK09950 putative transporter; 23.0 8E+02 0.017 24.9 25.7 118 30-147 80-216 (506)
138 KOG1619 Cytochrome b [Energy p 23.0 5.2E+02 0.011 23.2 7.7 84 237-324 66-152 (245)
139 TIGR00797 matE putative efflux 22.9 6.1E+02 0.013 23.4 11.3 25 253-277 63-87 (342)
140 TIGR00822 EII-Sor PTS system, 22.6 2.8E+02 0.0061 25.3 6.3 59 254-313 132-193 (265)
141 PHA02680 ORF090 IMV phosphoryl 21.4 2.6E+02 0.0056 20.5 4.6 54 232-286 17-71 (91)
142 PF00950 ABC-3: ABC 3 transpor 21.3 5.1E+02 0.011 23.5 7.8 48 365-418 186-233 (257)
143 PRK10367 DNA-damage-inducible 21.2 5.1E+02 0.011 25.5 8.5 30 252-281 79-108 (441)
144 PRK00187 multidrug efflux prot 20.8 5.5E+02 0.012 25.4 8.8 20 253-272 306-325 (464)
145 PF11990 DUF3487: Protein of u 20.4 4.4E+02 0.0095 20.8 7.6 48 32-80 19-67 (121)
146 PRK11560 phosphoethanolamine t 20.3 5.9E+02 0.013 26.2 8.8 33 357-389 110-144 (558)
147 PF03845 Spore_permease: Spore 20.1 7.1E+02 0.015 23.1 10.6 81 61-149 32-113 (320)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-56 Score=416.89 Aligned_cols=384 Identities=34% Similarity=0.557 Sum_probs=346.9
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh-
Q 014330 30 SKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG- 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~- 108 (426)
.++..|..++..|+.+.++|+|+|++|+||+++||+.|.+..++.+.++.|+++.+++|.+++.++.+.+. .+|+|.+
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~-~~y~~~~~ 121 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPS-LDYAETAE 121 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCcc-ccHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999987654443 5555554
Q ss_pred ---------HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcc
Q 014330 109 ---------YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS 179 (426)
Q Consensus 109 ---------~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 179 (426)
.+.+|+++|.+++..+.++++|.|+.|++.++++++++.+..... ..+...++++.++..+++++
T Consensus 122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~------~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG------VLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC------CccHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999999999999843322 36678999999999999999
Q ss_pred ccccCccchHHHHHHHHHHHHhheeeeechhhhhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHH
Q 014330 180 IPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFG 259 (426)
Q Consensus 180 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~ 259 (426)
+|++|.++.+|.++.++++..++++.++...+.. +.++...+.++++++..+|+.+|||.|+.++.|++++||+|++++
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~ 274 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFP 274 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcC
Confidence 9999999999999999999999999988877544 444555566789999999999999999999999999999999999
Q ss_pred ---hHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC--
Q 014330 260 ---RILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD-- 334 (426)
Q Consensus 260 ---~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~-- 334 (426)
.++..++.+++++|..+|++||+.||+++++.++.|+|+++....+++++++.++.+||++++|..+.+|+.+++
T Consensus 275 g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~ 354 (449)
T KOG1304|consen 275 GPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKF 354 (449)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred --cc---hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc---CchhHHhhhHHHHHHH
Q 014330 335 --YR---YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE---LGWNGIVMDAALLVFG 406 (426)
Q Consensus 335 --~~---~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~---~~~~~~~~~~~~~~~g 406 (426)
+| ...+.|+.+++++..+|..+||++..++++|+++++.+.+++|++++++..+++ +.+|+.+.+.+++++|
T Consensus 355 ~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G 434 (449)
T KOG1304|consen 355 SENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFG 434 (449)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHH
Confidence 22 234589999999999999999999999999999999999999999999998754 3467888999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014330 407 VVIGISGTWSSLMEI 421 (426)
Q Consensus 407 ~~~~~~g~~~si~~~ 421 (426)
++.++.|||.++.|+
T Consensus 435 ~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 435 VFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHhhhhhcC
Confidence 999999999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2e-55 Score=432.17 Aligned_cols=384 Identities=20% Similarity=0.263 Sum_probs=318.4
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHh
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTV 111 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~ 111 (426)
+..+..++.+|++|+++|+|+|+||++++++||+.|++++++.+.++.|+.+++.++.++ ++..+|+|+++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-------~~~~sY~~la~~~ 130 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-------TNIRTYEGVARVL 130 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCCCCHHHHHHHH
Confidence 346678999999999999999999999999999999999999999999999999998775 5668999999999
Q ss_pred hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHH
Q 014330 112 CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSI 191 (426)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~ 191 (426)
+||++++++++.+.+.++|.|++|++..+|.++.+++.....+++......+..+..+..++++|++++|+++.++++|.
T Consensus 131 ~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 131 LGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 99999999999999999999999999999999998875432222211112233333334556789999999999999999
Q ss_pred HHHHHHHHHhheeeeechhhhhcc-----------CccccccccchhhhHHHHHHHhhhccceeeccccccCcc--hhhH
Q 014330 192 FADIVDLGAMGLVMVEDVMISMKQ-----------RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN--KQRF 258 (426)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~--~~~~ 258 (426)
++..++++.++.++++...+..++ .++...++...+.+.++++++|||.||.+.|++++|||| |+|+
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~ 290 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKF 290 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHH
Confidence 999888777766655443221111 112222333346889999999999999999999999998 5789
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhccccccccceecccc-C-ChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-
Q 014330 259 GRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG-A-GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY- 335 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~-~-~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~- 335 (426)
.++...++.++.++|.++|++||+.||++++++++.|++ . +....+++++..+.++++||++.+|.|+.+++.+..+
T Consensus 291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~ 370 (467)
T PTZ00206 291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999994 3 4677888899999999999999999999999887322
Q ss_pred -c----hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhh---hcccCchhHHhhhHHHHHHHH
Q 014330 336 -R----YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIV---FKQELGWNGIVMDAALLVFGV 407 (426)
Q Consensus 336 -~----~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~---~~~~~~~~~~~~~~~~~~~g~ 407 (426)
+ ++...+..+..++.++|+++|+++.+++++|+++++.++|++|+++|++. .+++.++++++.++.++++|+
T Consensus 371 ~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv 450 (467)
T PTZ00206 371 RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGV 450 (467)
T ss_pred ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHh
Confidence 1 12234455566778899999999999999999999999999999999984 233445566788999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 014330 408 VIGISGTWSSLMEIV 422 (426)
Q Consensus 408 ~~~~~g~~~si~~~i 422 (426)
+.++.|||+++++.+
T Consensus 451 ~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 451 IAIVFGTGATIWGVT 465 (467)
T ss_pred heEEecchhHhhHHh
Confidence 999999999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=405.72 Aligned_cols=394 Identities=23% Similarity=0.393 Sum_probs=339.2
Q ss_pred CCcCCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccc
Q 014330 26 LLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFG 105 (426)
Q Consensus 26 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~ 105 (426)
.....+++.|++++.++.++.++|+|+|+|||++++.||..|++++++.++++.||..+|.+|.+..+...+ ++.++|.
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~-~r~~~Y~ 108 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG-KRRYRYP 108 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-ccCCChH
Confidence 333557889999999999999999999999999999999999999999999999999999999998765432 2347899
Q ss_pred chhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCc
Q 014330 106 DLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
|+++++||+++++++..++.+.+++.++.|.+..++++..+++....+.. ......++.+...+++|++++|+++.
T Consensus 109 dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~----~l~~~~f~iif~~i~~~~s~lp~~~~ 184 (437)
T KOG1303|consen 109 DLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN----SLDKQYFIIIFGLIVLPLSQLPNFHS 184 (437)
T ss_pred HHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----cccceehhhhHHHHHHHHHHCCCcch
Confidence 99999999999999999999999999999999999999999997655421 12256677777788889999999999
Q ss_pred cchHHHHHHHHHHHHhheeeeechhhhhcc---CccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHHhHH
Q 014330 186 LAPLSIFADIVDLGAMGLVMVEDVMISMKQ---RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRIL 262 (426)
Q Consensus 186 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~ 262 (426)
+++++..+.+..+....+.+..+...+... ..+....++....++++|++.|+|.+|..+|++|++||+|+|++|++
T Consensus 185 l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~ 264 (437)
T KOG1303|consen 185 LSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKAL 264 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHH
Confidence 999999998888776655554443332211 11122121111127999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccccceecccc-CChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcc-----
Q 014330 263 GWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG-AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR----- 336 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~-~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~----- 336 (426)
..++.+++.+|+..++.||++||++.+|+++.|++ +.+....+++++.+|++.+++.+..|..+.+|+..+.++
T Consensus 265 lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~ 344 (437)
T KOG1303|consen 265 LISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKK 344 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccc
Confidence 99999999999999999999999999999999996 789999999999999999999999999999999997432
Q ss_pred ----hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCchhHHhhhHHH-HHHHHHHHH
Q 014330 337 ----YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAAL-LVFGVVIGI 411 (426)
Q Consensus 337 ----~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 411 (426)
.|...|..++..+.++|+.+|.|+++++++|+....++++++|+++|++.+|.++...+....+.. .++|++.++
T Consensus 345 ~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v 424 (437)
T KOG1303|consen 345 RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSV 424 (437)
T ss_pred cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHH
Confidence 345589999999999999999999999999999999999999999999998766666667777777 799999999
Q ss_pred HHHHHHHHHHhCC
Q 014330 412 SGTWSSLMEIVAP 424 (426)
Q Consensus 412 ~g~~~si~~~i~~ 424 (426)
.....++++++.+
T Consensus 425 ~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 425 LAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988764
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.3e-51 Score=402.11 Aligned_cols=379 Identities=30% Similarity=0.517 Sum_probs=326.9
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHh
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTV 111 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~ 111 (426)
||.|.++++++++|+++|+|+|+||+++++.||+.|++++++++.++.+|.+++.++..+.+ ++++..+|+|+++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~---~~~~~~~y~~l~~~~ 77 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP---NGTGRRSYGDLARRA 77 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc---ccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999988754 236789999999999
Q ss_pred hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHH
Q 014330 112 CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSI 191 (426)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~ 191 (426)
+||++++++++++.++++|.+++|++..+|.++++.+...++ ...++..+..+..++++|++++|+++.+++.+.
T Consensus 78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~ 152 (409)
T PF01490_consen 78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSI 152 (409)
T ss_pred ccccccccccchheeccccccceeEEEeeeeeeccccccccc-----ccccccccccccccccccccccchhhHHHHHhh
Confidence 999999999999999999999999999999999999875443 124556666777888899999999999999999
Q ss_pred HHHHHHHHHhheeeeech---hhhhcc--CccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHH---hHHH
Q 014330 192 FADIVDLGAMGLVMVEDV---MISMKQ--RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFG---RILG 263 (426)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~---~~~~ 263 (426)
++.++++....+...... .....+ .++.....++.+++.+++++.|||.+|.++|++++|||+|+|++ ++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~ 232 (409)
T PF01490_consen 153 LGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLS 232 (409)
T ss_pred hhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeee
Confidence 999888764222222211 111111 11111223566899999999999999999999999999998766 9999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccccceeccccCC-hhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-------
Q 014330 264 WCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG-LVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY------- 335 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~-~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~------- 335 (426)
.++.+++++|..+|+.||++||+++++|++.|++++ +...++++++.++++.++|++.+|.|+.+++.+.++
T Consensus 233 ~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~ 312 (409)
T PF01490_consen 233 ISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDS 312 (409)
T ss_pred ehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccc
Confidence 999999999999999999999999999999999987 699999999999999999999999999999999642
Q ss_pred ----c----hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCchhHH-----hhhHHH
Q 014330 336 ----R----YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGI-----VMDAAL 402 (426)
Q Consensus 336 ----~----~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~~~-----~~~~~~ 402 (426)
+ ++...|.+++..+.++|..+||++.+++++|+++++.++|++|+++|+|.+|+++.+.++ ...+..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (409)
T PF01490_consen 313 PKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWII 392 (409)
T ss_pred cccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEE
Confidence 1 233478889999999999999999999999999999999999999999999876543322 457899
Q ss_pred HHHHHHHHHHHHHHHH
Q 014330 403 LVFGVVIGISGTWSSL 418 (426)
Q Consensus 403 ~~~g~~~~~~g~~~si 418 (426)
+++|+++++.|+|+++
T Consensus 393 ~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 393 IVFGVVLMVFGTYQSI 408 (409)
T ss_pred EEEeeehhHHhHHHHc
Confidence 9999999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.9e-47 Score=373.68 Aligned_cols=385 Identities=17% Similarity=0.163 Sum_probs=308.9
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcc------cc
Q 014330 30 SKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKI------NS 103 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~------~~ 103 (426)
..++.|..++.+++.+..+|.|+|+||+++++.||++|++.+++.+.++.||.+++.++..+..+++++++. .+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999987776654433221 26
Q ss_pred ccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcccccc
Q 014330 104 FGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTL 183 (426)
Q Consensus 104 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 183 (426)
|.|+++..+||+++.+..+...+++++.++.|++..++.+..+-+. .+...++.+...+..|++++|++
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~-----------~~~~~~~~i~~~v~~~~~~i~sl 190 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDN-----------LDKRTWTYIFGACCATTVFIPSF 190 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCC-----------cCCCeEEeehHHHHHHHHHccCH
Confidence 7899999999999999999999999999999999888877766322 12233333444455567789999
Q ss_pred CccchHHHHHHHHHHHHhheeeeechhhhhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHHhHHH
Q 014330 184 THLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILG 263 (426)
Q Consensus 184 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~ 263 (426)
+++++++.++..+++.....+.+........+..+.....+...++.++++++|+|.+|..+|++++|||||+|++++..
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~ 270 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL 270 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHH
Confidence 99999999998876554333332222221111110011114446777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccc--ceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcc-----
Q 014330 264 WCMAFISLLYGSFGALGYFAFGEETKD--IITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR----- 336 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~~--~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~----- 336 (426)
.+...++++|+.+++.+|+.||+++.+ +.+.|.|++.....++++..++++.+||++..|+.+..|+..+.++
T Consensus 271 l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~ 350 (473)
T PLN03074 271 AATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSIC 350 (473)
T ss_pred HHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHH
Confidence 999999999999999999999998764 5577788776678999999999999999999999999998875331
Q ss_pred hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc-------------Cchh--HHhhhHH
Q 014330 337 YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE-------------LGWN--GIVMDAA 401 (426)
Q Consensus 337 ~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~-------------~~~~--~~~~~~~ 401 (426)
.+...|..++++++++|..+|+|+.+++++|+++++.+++++|+++|++.++++ .+++ ..+.++.
T Consensus 351 ~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 430 (473)
T PLN03074 351 LRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAF 430 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhH
Confidence 234479999999999999999999999999999999999999999999866532 2222 3578888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhCCC
Q 014330 402 LLVF-GVVIGISGTWSSLMEIVAPK 425 (426)
Q Consensus 402 ~~~~-g~~~~~~g~~~si~~~i~~~ 425 (426)
++++ +++..+.|+|.|+.+++++-
T Consensus 431 iiv~~~~~g~~~G~~asi~~ii~~~ 455 (473)
T PLN03074 431 VVVWVLVVGFGFGGWASMTNFVRQI 455 (473)
T ss_pred HHHhhhhHhhccchHHHHHHHHHhh
Confidence 8875 55557899999999999764
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=335.57 Aligned_cols=387 Identities=23% Similarity=0.384 Sum_probs=328.0
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 30 SKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.+++.|.+.+++|+.|+++|+|++++|++|++.|.+.|++++++++.++.++.+++.++..+ .++.+|+++++
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~-------~~~~ty~~l~~ 74 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK-------SGERTYSSLGD 74 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh-------cCCCCHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999988 45559999999
Q ss_pred HhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhH-HHHHHhHHHhhhccccccCccch
Q 014330 110 TVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL-YIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
+.+|+.++....+.......| +++|++.++|.++.+.......++-...+..+.. ++...+.+..|++..|++.++++
T Consensus 75 ~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 75 LIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred HHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 999999987777777777777 7999999999999766543221110000133433 56667778889999999999999
Q ss_pred HHHHHHHHHHHHhheeeeechhhhh-ccCc--cccccccchhhhHHHHHHHhhhccceeeccccccCcch--hhHHhHHH
Q 014330 189 LSIFADIVDLGAMGLVMVEDVMISM-KQRP--ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK--QRFGRILG 263 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~--~~~~~~~~ 263 (426)
.|.++...++..+.++.++....+. .... ....-..+.+.+.+++++.|+|.||++..++++|||+| +|+.++..
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 9999999999988888876655332 1111 11111122579999999999999999999999999997 56999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccccceeccccCCh-------hhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-
Q 014330 264 WCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGL-------VSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY- 335 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~~-------~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~- 335 (426)
.+...+.++|..+|.+||+.||+++.+|++.+++.+. .....+....++++.++|+..+|.|..+++.+.++
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~ 313 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQ 313 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccC
Confidence 9999999999999999999999999999999998642 35789999999999999999999999998887532
Q ss_pred --------chhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCchhHHhhhHHHHHHHH
Q 014330 336 --------RYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGV 407 (426)
Q Consensus 336 --------~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 407 (426)
+++.+++..++..+.+.|++.|+++.+.+++|++++..++|++|+++|++..|+ +++++...++..++++
T Consensus 314 ~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~ 391 (411)
T KOG1305|consen 314 PGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGV 391 (411)
T ss_pred CCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHH
Confidence 234557788888889999999999999999999999999999999999999887 6778889999999999
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 014330 408 VIGISGTWSSLMEIVAPKA 426 (426)
Q Consensus 408 ~~~~~g~~~si~~~i~~~~ 426 (426)
...+.|+...+.++..+++
T Consensus 392 ~~~i~~~~~~i~~~~~~~~ 410 (411)
T KOG1305|consen 392 LLSIIGVAVMIYDLLAKNA 410 (411)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999987753
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-42 Score=306.16 Aligned_cols=385 Identities=23% Similarity=0.334 Sum_probs=332.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhC-CCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHG-FSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~-~~~~~~y~~l 107 (426)
+.+.+++.+++..|+.|++-|-=+++||+|....||. ++..++..+.++.||+.+|.+|..+-+++-+ -..+++|.++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 3457899999999999999999999999999999998 9999999999999999999999776332100 1235699999
Q ss_pred hHHhhchh-hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 108 GYTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 108 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
++.++++. |++.+.+.+.+.+..+|+.|.++.++.+++-+|..+- .+..|+.+.....+|.+++|++|..
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv---------d~~sWm~i~~a~LLpc~FLk~Lk~V 261 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV---------DKASWMMITSASLLPCSFLKDLKIV 261 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCc---------cccchhhhhhHHHhhhHHHHHHHHH
Confidence 99988877 6699999999999999999999999999999986432 2345666667778899999999999
Q ss_pred chHHHHHHHHHHHHhheeeeechhh-hhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHHhHHHHH
Q 014330 187 APLSIFADIVDLGAMGLVMVEDVMI-SMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWC 265 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 265 (426)
+++|...++.=++.-.+++.++... ....+..+.-.-+..+++.++|+++|+|..|..+|.+...|+||.+++....++
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~Ws 341 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWS 341 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehH
Confidence 9999888887766655555555432 222233322222677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccccccceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC-----------
Q 014330 266 MAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD----------- 334 (426)
Q Consensus 266 ~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~----------- 334 (426)
-+...++-..+|..+|++||++++..+.+|+|+..++.+++++..+..+.|||+.++.+.+.+|+-+..
T Consensus 342 HIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscy 421 (524)
T KOG4303|consen 342 HIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCY 421 (524)
T ss_pred HHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceee
Confidence 999999999999999999999999999999999999999999999999999999999999999987742
Q ss_pred ---cchhhH---HHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCchhHHhhhHHHHHHHHH
Q 014330 335 ---YRYCLW---LRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVV 408 (426)
Q Consensus 335 ---~~~~~~---~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 408 (426)
.+.+.| .|+++++.+.+.|+++|.+..+++++|++.++.++|++|+++++++..++..+.++.....++++|..
T Consensus 422 s~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~ 501 (524)
T KOG4303|consen 422 SPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCS 501 (524)
T ss_pred CCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeee
Confidence 122333 79999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q 014330 409 IGISGTWSSLMEIVA 423 (426)
Q Consensus 409 ~~~~g~~~si~~~i~ 423 (426)
+.+.|.|.|..++++
T Consensus 502 ~~vsG~y~S~~~Li~ 516 (524)
T KOG4303|consen 502 VCVSGVYFSSMELIR 516 (524)
T ss_pred EEEEeEehhhHHHHH
Confidence 999999999988875
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-32 Score=259.91 Aligned_cols=378 Identities=19% Similarity=0.148 Sum_probs=287.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcc-ccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKI-NSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~y~~l 107 (426)
..+++.+..+++.++.+++||+|+|++|++++..|+.++++++++.+..++++++++.|+..+. ++. .++.++
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~------~~~~~~~~~~ 77 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS------PNGKASITSL 77 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999884 333 599999
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+||++++++++.+.+.+++.+.+|.+..++.+++.+++....+ ...|.....+...++.++++.++....+
T Consensus 78 ~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-----~~~r~~~~lif~~~~~~l~~~~~~~~lk 152 (415)
T COG0814 78 VEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-----PLPRKLGSLIFALVLAFLSWLGTLAVLK 152 (415)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-----CcchHHHHHHHHHHHHHHHHhchhHHHH
Confidence 99999999999999999999999999999999999999998643321 1345566666555666688888888888
Q ss_pred hHHHHHHHHHHHHhheeeeechhh---hhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcch-hh-HHhHH
Q 014330 188 PLSIFADIVDLGAMGLVMVEDVMI---SMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK-QR-FGRIL 262 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~-~~~~~ 262 (426)
..+.+....+.+.++...+..... .....+... ..++..+..++|+++|||.+|+++|++++|||++ +| .+|+.
T Consensus 153 ~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 153 ITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 888777766665555444433221 111111111 1267789999999999999999999999999986 44 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccccceeccccCC--------------hhhHHHHHHHHHHHHhhccccccchHHHH
Q 014330 263 GWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG--------------LVSTLVNVGLCVNLFLTFPLMMNPVYEVV 328 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~--------------~~~~~~~i~~~~~~~~s~pl~~~~~~~~l 328 (426)
.++..+..++|..+++++|..+|+++.+++.++.+++ ...+..+++..+.+.+|+--+....+|.+
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 9999999999999999999999999999988887653 24556677778888888877888888888
Q ss_pred HHhhcCc--ch-hhH--------HHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCchhHHh
Q 014330 329 ERRFCDY--RY-CLW--------LRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIV 397 (426)
Q Consensus 329 ~~~~~~~--~~-~~~--------~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~~~~ 397 (426)
++.++++ +. |.. .....+.....++...+..+.+.+.+|+.....+.++.|...+.|....++.+.++.
T Consensus 312 ~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~ 391 (415)
T COG0814 312 ADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFL 391 (415)
T ss_pred hHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCch
Confidence 8888631 11 111 112222333455555666666666666666666666666666655554443333235
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 014330 398 MDAALLVFGVVIGISGTWSSL 418 (426)
Q Consensus 398 ~~~~~~~~g~~~~~~g~~~si 418 (426)
...+++++|+..+....++..
T Consensus 392 ~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 392 LLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888887776543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=3.7e-27 Score=223.76 Aligned_cols=372 Identities=13% Similarity=0.096 Sum_probs=265.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
.++++.+..++.+.+.++.||+|+|+||.+.++.|+.+++++++++|.+..+|+.++.|...+. ++..++.+++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~------~~g~~~~tma 79 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY------RIGSSFDTIT 79 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999998764 5567899999
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhH--HHHHHhHHHhhhccccccCcc
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL--YIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~pl~~~~~l~~~ 186 (426)
|+.+||+|+.+..+.+.+..++.+++|+.-.++.+++.+++.+.+ .++.. +++....-.+...-.|..++.
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~-------i~~~~~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN-------VPARAAGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC-------CcHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999999999999998752211 11221 111111111111122444444
Q ss_pred chHHHHHHHHHHHHhheeeeechhhhhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcc-hhhHHhHHHHH
Q 014330 187 APLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN-KQRFGRILGWC 265 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-~~~~~~~~~~~ 265 (426)
.+.-..+.+..+...+.......+...-.+........+.....+++++++||+.|.++|++.+++++ +||.+|++..+
T Consensus 153 n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 153 TAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 44444443333332222222221111101111111113456889999999999999999999888876 68999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccccc-------ccce---ecc----ccCChhhHHHHHHHHHHHHhhccccccchHHHHHHh
Q 014330 266 MAFISLLYGSFGALGYFAFGEET-------KDII---TTN----FGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERR 331 (426)
Q Consensus 266 ~~~~~~~Y~~~~~~gy~~fG~~~-------~~~i---~~~----~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~ 331 (426)
..+..++|++.-......-+.+. .+|+ ... .++........++..+.+.+||--....++|.+.+.
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986554444333211 1111 111 223366778889999999999999999999999999
Q ss_pred hcCcch---hhHHHHHHHHHHHHHhhccCC-cchhhhhcchhhhhhHHHHhhhHHHHhhhcc-cCc----hhHHhhhHHH
Q 014330 332 FCDYRY---CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQ-ELG----WNGIVMDAAL 402 (426)
Q Consensus 332 ~~~~~~---~~~~~~~~~~~~~~va~~~p~-~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~-~~~----~~~~~~~~~~ 402 (426)
++.++. |...-....+.+.+++.+.|+ |-..+++.|.. ...+..++|+++.++.||+ +.+ +..+.....+
T Consensus 313 ~k~~~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~ 391 (414)
T PRK10483 313 FGFDDSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLI 391 (414)
T ss_pred hCCCCccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHH
Confidence 975532 222334566778999999998 99999999966 6677789999999999975 222 2234444666
Q ss_pred HHHHHHHHHHHH
Q 014330 403 LVFGVVIGISGT 414 (426)
Q Consensus 403 ~~~g~~~~~~g~ 414 (426)
+++|+...++-.
T Consensus 392 ~~~g~~~i~~~i 403 (414)
T PRK10483 392 LLFGVGNALVHI 403 (414)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=5.4e-27 Score=225.07 Aligned_cols=366 Identities=17% Similarity=0.125 Sum_probs=263.2
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHh
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTV 111 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~ 111 (426)
++.+.+++++.+.++.||+|+|+||++.+..|..++++.+++.+...++|+.++.|...+. ++..++.+++++.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~------~~~~~~~~~a~~~ 74 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT------PEGSSLTSMAEKY 74 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999998873 5678999999999
Q ss_pred hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHH
Q 014330 112 CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSI 191 (426)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~ 191 (426)
+||+++++..+.+.+..++.+++|....++.+++++++.... ..++.....+...+.-... ..+.+...+.+.
T Consensus 75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~------~~~~~~~~~~f~~i~~~iv-~~g~~~v~~~n~ 147 (394)
T PF03222_consen 75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT------DLSPWLSSLLFTIIFGGIV-YFGTKAVDRINR 147 (394)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 999999999999999999999999999999999999864421 0122221111111111011 112223444444
Q ss_pred HHHHHHHHHhheeeeechhhhhc-c-CccccccccchhhhHHHHHHHhhhccceeeccccccCcc-hhhHHhHHHHHHHH
Q 014330 192 FADIVDLGAMGLVMVEDVMISMK-Q-RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN-KQRFGRILGWCMAF 268 (426)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-~~~~~~~~~~~~~~ 268 (426)
..+...+..+........++... . ........++.....++|+.++||..|+.+|++.+.+++ +||.+|++..+..+
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 44333333333222222221110 0 000111237888999999999999999999999998885 78899999999999
Q ss_pred HHHHHHHHhhhhhhcc-----------cccccc--ceeccc-cCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC
Q 014330 269 ISLLYGSFGALGYFAF-----------GEETKD--IITTNF-GAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD 334 (426)
Q Consensus 269 ~~~~Y~~~~~~gy~~f-----------G~~~~~--~i~~~~-~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~ 334 (426)
..++|++.-......- +++..+ ....+. .+.+......++..+++.+||--....++|.+.+.++.
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999997644443211 111111 122222 23467888999999999999999999999999999976
Q ss_pred cc---hhhHHHHHHHHHHHHHhhccCC-cchhhhhcchhhhhhHHHHhhhHHHHhhhcccCch-----hHHhhhHHHHHH
Q 014330 335 YR---YCLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQELGW-----NGIVMDAALLVF 405 (426)
Q Consensus 335 ~~---~~~~~~~~~~~~~~~va~~~p~-~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~-----~~~~~~~~~~~~ 405 (426)
++ .|..........+.++|...|+ |...+++.| .....+..++|+++.+|.||++... ..+.....++++
T Consensus 308 ~~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~ 386 (394)
T PF03222_consen 308 KNNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIF 386 (394)
T ss_pred CccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHH
Confidence 32 2223334445666888999988 889999999 8999999999999999998754321 235555566666
Q ss_pred HHHHHH
Q 014330 406 GVVIGI 411 (426)
Q Consensus 406 g~~~~~ 411 (426)
|++..+
T Consensus 387 ~i~iii 392 (394)
T PF03222_consen 387 GILIII 392 (394)
T ss_pred HHHHHH
Confidence 665544
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=8.4e-27 Score=222.50 Aligned_cols=363 Identities=15% Similarity=0.122 Sum_probs=260.8
Q ss_pred ChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhch
Q 014330 35 TRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGS 114 (426)
Q Consensus 35 s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 114 (426)
+..++.+.+.++.||+|+|+||.+.+..|+.++++++++++.+..|+++++.|...+ +++..++.+++|+.+||
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~------~~~~~~~~~~a~~~LG~ 77 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH------VPADTGLGTLAKRYLGR 77 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CCCCCCHHHHHHHHhCh
Confidence 778999999999999999999999999999999999999999999999999996554 24557899999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHH
Q 014330 115 VGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFAD 194 (426)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~ 194 (426)
+++++..+.+.+..+..+.+|....++.+.+.++++..++ ....+..+.+......+.. .+.+..-+++...+
T Consensus 78 ~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~----i~~~~~~l~F~~~~~~iv~---~g~~~v~~~n~~L~ 150 (403)
T PRK15132 78 YGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS----MSPTAGVLLFTLVAGGVVC---VGTSSVDLFNRFLF 150 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHH
Confidence 9999999999999999999999998888888776532221 0111222222221111111 22233333443333
Q ss_pred HHHHHHhheeeeechhhhhccCcccc--ccccchhhhHHHHHHHhhhccceeeccccccCcc-hhhHHhHHHHHHHHHHH
Q 014330 195 IVDLGAMGLVMVEDVMISMKQRPALK--AFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN-KQRFGRILGWCMAFISL 271 (426)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-~~~~~~~~~~~~~~~~~ 271 (426)
...+..++.......++... .... +. +...+..++|++.+||+.|.++|++.+.+++ +||.+|++.++..+..+
T Consensus 151 ~~~ii~~~~~~~~l~p~~~~--~~L~~~~~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li 227 (403)
T PRK15132 151 SAKIIFLVVMLALMMPHIHK--VNLLTLPL-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLV 227 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCH--HHHhcCCc-cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 32222222221111121100 0010 11 2224899999999999999999999888876 68899999999999999
Q ss_pred HHHHHhhhhhhcccccc-----cc-----ceecc----ccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcch
Q 014330 272 LYGSFGALGYFAFGEET-----KD-----IITTN----FGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRY 337 (426)
Q Consensus 272 ~Y~~~~~~gy~~fG~~~-----~~-----~i~~~----~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~ 337 (426)
+|++.-..+...-+.+. .+ +++.. .+..+...+..++..+++.+|+--....++|.+.+.+++++.
T Consensus 228 ~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~ 307 (403)
T PRK15132 228 AYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT 307 (403)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 99987766665554331 11 12222 233477788899999999999999999999999999964322
Q ss_pred ---hhHHHHHHHHHHHHHhhccCC-cchhhhhcchhhhhhHHHHhhhHHHHhhhccc-Cchh----HHhhhHHHHHHHHH
Q 014330 338 ---CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQE-LGWN----GIVMDAALLVFGVV 408 (426)
Q Consensus 338 ---~~~~~~~~~~~~~~va~~~p~-~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~-~~~~----~~~~~~~~~~~g~~ 408 (426)
|.....+..+.+.++|.+.|+ |....++.|. ....+.+++|+++.+|.||++ .+++ .+...++++++|++
T Consensus 308 ~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~ 386 (403)
T PRK15132 308 VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIA 386 (403)
T ss_pred ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHH
Confidence 333445566777899999998 8889999885 578899999999999999754 2222 46677778888887
Q ss_pred HHHHHH
Q 014330 409 IGISGT 414 (426)
Q Consensus 409 ~~~~g~ 414 (426)
.++.-.
T Consensus 387 ~i~~~~ 392 (403)
T PRK15132 387 VIGIQF 392 (403)
T ss_pred HHHHHH
Confidence 776544
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=1.9e-26 Score=218.65 Aligned_cols=372 Identities=13% Similarity=0.117 Sum_probs=263.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 30 SKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.++|.+..++.+.+.++.||+|+|+||.+.++.|+.+++++++++|....+|+.++.|...+. ++..++.+++|
T Consensus 5 ~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~------~~g~~l~tma~ 78 (415)
T PRK09664 5 AEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY------PVGSSFNTITK 78 (415)
T ss_pred hhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCHHHHHH
Confidence 345558888999999999999999999999999999999999999999999999999998774 56678999999
Q ss_pred HhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhH--HHHHHhHHHhhhccccccCccc
Q 014330 110 TVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKAL--YIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+.+||+|+.+.++.+.+..++.+++|+.-.++.+++.+++..+- ..++.. +.+......+...-.+..++.+
T Consensus 79 ~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~------~i~~~~~~llF~~~~~~~v~~gt~~vd~~n 152 (415)
T PRK09664 79 DLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGY------HANPRIVGICTAIFVASVLWISSLAASRIT 152 (415)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC------CCcHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 99999999999999999999999999999999999998752111 111211 1111111111122234444444
Q ss_pred hHHHHHHHHHHHHhheeeeechhh-hhccCccccc-cccchhhhHHHHHHHhhhccceeeccccccCcc-hhhHHhHHHH
Q 014330 188 PLSIFADIVDLGAMGLVMVEDVMI-SMKQRPALKA-FGDFSVFSYGIGVAVYAFEGVGMILPLESETRN-KQRFGRILGW 264 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-~~~~~~~~~~ 264 (426)
+.-..+.+..+...+.......+. ...+.+.... ...+..+..++|++++||+.|.++|++.+.+++ +||.+|++..
T Consensus 153 r~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~ 232 (415)
T PRK09664 153 SLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVF 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHH
Confidence 444433333333222222222111 1111110000 001335788999999999999999999888875 6889999999
Q ss_pred HHHHHHHHHHHHhhhhhh-----------ccccccccc---eeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHH
Q 014330 265 CMAFISLLYGSFGALGYF-----------AFGEETKDI---ITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 330 (426)
Q Consensus 265 ~~~~~~~~Y~~~~~~gy~-----------~fG~~~~~~---i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~ 330 (426)
+..+..++|++.=.+... ..|++.... ...+.+..+......++..+.+.+||--....++|.+.+
T Consensus 233 Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 233 GSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999754332222 122222221 122333347788889999999999999999999999999
Q ss_pred hhcCcch---hhHHHHHHHHHHHHHhhccCC-cchhhhhcchhhhhhHHHHhhhHHHHhhhcc-cCc----hhHHhhhHH
Q 014330 331 RFCDYRY---CLWLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQ-ELG----WNGIVMDAA 401 (426)
Q Consensus 331 ~~~~~~~---~~~~~~~~~~~~~~va~~~p~-~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~-~~~----~~~~~~~~~ 401 (426)
.++.++. |...-.+..+.+.+++.+.|+ |-..+++.|.. ......++|+++-+|.||+ ... +..+....+
T Consensus 313 ~~~~~~~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~ 391 (415)
T PRK09664 313 LFKIDNSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAI 391 (415)
T ss_pred HhCCCCccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHH
Confidence 9975532 222334556777899999998 99999999885 6678889999999999986 222 234666677
Q ss_pred HHHHHHHHHHHHH
Q 014330 402 LLVFGVVIGISGT 414 (426)
Q Consensus 402 ~~~~g~~~~~~g~ 414 (426)
.+++|++..++-.
T Consensus 392 ~~~~g~~ii~~~~ 404 (415)
T PRK09664 392 VILFGITVILCWF 404 (415)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=8.6e-27 Score=225.68 Aligned_cols=336 Identities=14% Similarity=0.077 Sum_probs=254.0
Q ss_pred HHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHH
Q 014330 40 FANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVA 119 (426)
Q Consensus 40 ~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 119 (426)
.+.++++++|+|++++|..+++.|..++++.+++.+.++.++...+.|...+. ++..++.+++++.+||+++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~------p~~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY------PGGASFNTIAKDLLGKTGNII 76 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCHHHHHHHHhCHHHHHH
Confidence 45678999999999999999999999999999999999999999999998773 566899999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHHHH
Q 014330 120 VDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLG 199 (426)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~~~ 199 (426)
..+.+++.++..+.+|.+..++.+..+++.....+ .++.....+...++ .....++.+...+++.+.+...+.
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~v~-~~l~~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFP------WSARAIVLIFTVLF-GSFVWLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCC------ccHHHHHHHHHHHH-HHHHHhchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887432211 12222222222222 233456778888888777776665
Q ss_pred Hhheeeeechhhhh-ccCccccc-cccchhhhHHHHHHHhhhccceeeccccccCc-chhhHHhHHHHHHHHHHHHHHHH
Q 014330 200 AMGLVMVEDVMISM-KQRPALKA-FGDFSVFSYGIGVAVYAFEGVGMILPLESETR-NKQRFGRILGWCMAFISLLYGSF 276 (426)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~~~~~~~~~~~~~~~~~~~Y~~~ 276 (426)
.+..+......+.. .+..+... ..++.++..+++...++|++|.+++++.+|++ |+||.+|++..+..+++++|+++
T Consensus 150 ~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443332222110 01000000 11456788999999999999989999999996 56889999999999999999998
Q ss_pred hhhhhhccccccccce-------------ec-cccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc---chhh
Q 014330 277 GALGYFAFGEETKDII-------------TT-NFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY---RYCL 339 (426)
Q Consensus 277 ~~~gy~~fG~~~~~~i-------------~~-~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~---~~~~ 339 (426)
........+.+..++. .. ..+..+...+..++..+.+.+|+.....+.+|.+.+.++++ +.|.
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~~~ 309 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKGRF 309 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 8777776654432111 11 12333567788889999999999999999999999888642 2344
Q ss_pred HHHHHHHHHHHHHhhccCC-cchhhhhcchhhhhhHHHHhhhHHHHhhhcc
Q 014330 340 WLRWAVVLGVSLVALLVPN-FADFLSLVGSSVCCILGFVLPALFHLIVFKQ 389 (426)
Q Consensus 340 ~~~~~~~~~~~~va~~~p~-~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~ 389 (426)
....+....+.++|.+.|+ +-..++++| +....+.+++|+++++|.||+
T Consensus 310 ~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 310 KTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 4455566777889999998 448999999 888999999999999998875
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=1.3e-21 Score=185.72 Aligned_cols=365 Identities=15% Similarity=0.120 Sum_probs=252.7
Q ss_pred HHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHH
Q 014330 40 FANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVA 119 (426)
Q Consensus 40 ~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 119 (426)
...+.++.||+|+|+||...+..|..+.++++++.+..+++++..+.|.....+ ++..++.+++|+.+||+++.+
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-----~~~~~i~~v~~~~lG~~g~~i 99 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-----NPSGNITETVEEHFGKTGGVV 99 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CCCCCHHHHHHHHcChhHHHH
Confidence 388899999999999999999999999999999999999999999999876531 456799999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHHHH
Q 014330 120 VDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLG 199 (426)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~~~ 199 (426)
..+++++..+..+.+|...+.+.+++++.+..+.+ ..++.....++..++.... ..+-+..-+++...+...+.
T Consensus 100 ~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~-----~~~r~l~slifv~~l~~iv-~~G~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 100 ITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFA-----PLNRGFVALFLLLLMAFVI-WFGKDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcC-----CccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888655432110 1233333322221211111 22334444444443333333
Q ss_pred Hhheeeeechhh----hhccCcc-c-cccc---cchhhhHHHHHHHhhhccceeecccccc----Cc-----c--hhhHH
Q 014330 200 AMGLVMVEDVMI----SMKQRPA-L-KAFG---DFSVFSYGIGVAVYAFEGVGMILPLESE----TR-----N--KQRFG 259 (426)
Q Consensus 200 ~~~~~~~~~~~~----~~~~~~~-~-~~~~---~~~~~~~~~~~~~faf~~~~~~~~i~~~----m~-----~--~~~~~ 259 (426)
.+........++ ...+.+. . ...+ ....+..++|++++||+.|+++|++..+ .+ | +||.+
T Consensus 174 ~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ 253 (443)
T PRK13629 174 SLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCS 253 (443)
T ss_pred HHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHH
Confidence 333332222222 1111110 0 1110 1134788899999999999999997555 42 4 68899
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccccc-----ccce--e----ccccC---------ChhhHHHHHHHHHHHHhhccc
Q 014330 260 RILGWCMAFISLLYGSFGALGYFAFGEET-----KDII--T----TNFGA---------GLVSTLVNVGLCVNLFLTFPL 319 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~-----~~~i--~----~~~~~---------~~~~~~~~i~~~~~~~~s~pl 319 (426)
|++..+..+..++|+..-+.+...-+++. ++|. + +.+++ ........++..+++.+||--
T Consensus 254 rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlG 333 (443)
T PRK13629 254 QIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFG 333 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888777766543 1222 1 12232 335677778888899999999
Q ss_pred cccchHHHHHHhhcC----c-c----h---hhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhh
Q 014330 320 MMNPVYEVVERRFCD----Y-R----Y---CLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVF 387 (426)
Q Consensus 320 ~~~~~~~~l~~~~~~----~-~----~---~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~ 387 (426)
+...++|.++.++.+ . + . +........+.+.+++..-|++-.+++-.|+-....+.|++|...-+|..
T Consensus 334 v~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp 413 (443)
T PRK13629 334 HYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP 413 (443)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH
Confidence 999999999888831 1 1 1 12233445566788999999999999977777788899999999888775
Q ss_pred cccCchhHHhhhHHHHHHHHHHHHHHHHH
Q 014330 388 KQELGWNGIVMDAALLVFGVVIGISGTWS 416 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 416 (426)
.-++-| ++..++.+.+.|.+......|.
T Consensus 414 ~l~~yr-~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 414 SLAKYR-GRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHhC-CCchhHHHHHHHHHHHHHHHHh
Confidence 422111 1334678888887776655543
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.89 E-value=1.6e-21 Score=186.97 Aligned_cols=338 Identities=15% Similarity=0.102 Sum_probs=248.1
Q ss_pred HHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhh
Q 014330 38 KTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGR 117 (426)
Q Consensus 38 ~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (426)
.-.+.+.++++|+|+|.||...++.||...++..++...+.+++..++.|.....+ .+..++.|++|+.+||+++
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-----~p~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-----NPCEDITEVVEEHFGKNWG 81 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHcCHHHH
Confidence 35678899999999999999999999999999999999999999999988855421 2368999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHH
Q 014330 118 VAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVD 197 (426)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~ 197 (426)
.+..+.+++..+..+.+|....++.+++++.+....+ .+.+.+..+..++.+......+.+.+.+++.+.+...
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~------~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ 155 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA------PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPL 155 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887532211 1122222222222222333457777777776666555
Q ss_pred HHHhheeeeechhhh----hccCccccccccchhhhHHHHHHHhhhccceeecccc----ccCc--c--hhhHHhHHHHH
Q 014330 198 LGAMGLVMVEDVMIS----MKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLE----SETR--N--KQRFGRILGWC 265 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~--~--~~~~~~~~~~~ 265 (426)
+..+........++. ....|... +.+.++..+.+..++||.+|+.+|++. +|.+ | +||.+|+...+
T Consensus 156 ii~l~~l~~~lip~~~~~~L~~~p~~~--~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~ 233 (397)
T TIGR00814 156 VLILVLLSLYLIPHWNGANLTTFPSFN--GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGA 233 (397)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCCccc--chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 444444333333221 11111111 145679999999999999999999986 3344 3 57899999999
Q ss_pred HHHHHHHHHHHhhhhhhccccccc-----cce--ec----cccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhc-
Q 014330 266 MAFISLLYGSFGALGYFAFGEETK-----DII--TT----NFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFC- 333 (426)
Q Consensus 266 ~~~~~~~Y~~~~~~gy~~fG~~~~-----~~i--~~----~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~- 333 (426)
..+..++|+..-+.+....+.+.. +|+ +. ..+......+..++..+++.+|+--+...++|.+.+++.
T Consensus 234 ~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~ 313 (397)
T TIGR00814 234 SLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLN 313 (397)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999988888888775532 222 11 223346778888889999999999999999999999882
Q ss_pred ------C-cchh---hHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhc
Q 014330 334 ------D-YRYC---LWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 334 ------~-~~~~---~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~ 388 (426)
+ .+.+ ........+.+.+++..-|++-.+++-.|+-....+.|++|...-+|...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~ 378 (397)
T TIGR00814 314 SLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPA 378 (397)
T ss_pred HhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHH
Confidence 1 1112 22334455667889999999999999777777788999999998877754
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.76 E-value=7e-17 Score=155.19 Aligned_cols=335 Identities=12% Similarity=0.141 Sum_probs=226.8
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHh
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTV 111 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~ 111 (426)
++.|.+|..+.++++++|+|++.+|...++.+-..+++..++.+.........+.+..++. |+ .+..|..++.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~------p~-~~~~~~~~~~ 73 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF------PE-KNFSEILSKY 73 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC------CC-CCHHHHHHHH
Confidence 4689999999999999999999999988776666688888999999999999999988773 44 4788999999
Q ss_pred hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHH
Q 014330 112 CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSI 191 (426)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~ 191 (426)
+||+.+++..+...++............++.++...... .+.+.. .++..+..-....++++..++++.
T Consensus 74 ~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------tp~~~~-~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 74 LGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPR----------TPIIVI-IILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CCHHHH-HHHHHHHHHHHHHccHHHHHHHHH
Confidence 999999999998888877776666666666665543211 122222 222222223445678888888887
Q ss_pred HHHHHHHHHh-heeeeechhhh-hccCccccccccchhhhHHHH-HHHhhhccceeeccccccCcchhhHHhHHHHHHHH
Q 014330 192 FADIVDLGAM-GLVMVEDVMIS-MKQRPALKAFGDFSVFSYGIG-VAVYAFEGVGMILPLESETRNKQRFGRILGWCMAF 268 (426)
Q Consensus 192 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~ 268 (426)
+.....+... ..+........ ..+-.+... +++.+...+.- ...++|.+.+......+++|||||.+|+...+..+
T Consensus 143 i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~-~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~ 221 (359)
T TIGR00912 143 ILLIIFLILFILVLILLAPKLGNIKNLLPVLE-NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIII 221 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHccCccc-cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 7766555442 22222111111 111111222 24556666554 78899999999888999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccccccccce----e---c--cccC--ChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcch
Q 014330 269 ISLLYGSFGALGYFAFGEETKDII----T---T--NFGA--GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRY 337 (426)
Q Consensus 269 ~~~~Y~~~~~~gy~~fG~~~~~~i----~---~--~~~~--~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~ 337 (426)
+.++|..........+|.+..++. . . +.++ +....+.-..+....+...-+..+.....+.+.++.+++
T Consensus 222 ~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
T TIGR00912 222 GVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY 301 (359)
T ss_pred HHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999987654322 1 1 1121 123345556678888888899999999999999988876
Q ss_pred hhHHHHHHHHHHHHHhhccCCcchhhhhcc---hhhhhhHHHHhhhHHHHhhh
Q 014330 338 CLWLRWAVVLGVSLVALLVPNFADFLSLVG---SSVCCILGFVLPALFHLIVF 387 (426)
Q Consensus 338 ~~~~~~~~~~~~~~va~~~p~~~~i~~~~G---~~~~~~~~~ilP~l~~~~~~ 387 (426)
+... ..+..+...++...++... ..... ...+....+++|.++.+...
T Consensus 302 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 302 SILI-LPVLMVIFSISFFPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred chhH-HHHHHHHHHHHHccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 1222233334433333333 22211 23334566778998766544
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.76 E-value=5.9e-16 Score=152.82 Aligned_cols=240 Identities=10% Similarity=0.004 Sum_probs=159.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
+++++.+.++.++..+++++|+|++.+|..+++.|. .+++..++.+++.......+.|...+. |+.....+..
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~------P~~GG~y~y~ 75 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFS------RKSGGMGGYA 75 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhC------CCCCchHHHH
Confidence 357889999999999999999999999988888887 477888888888888888888876664 4445556668
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
++.+||+.+++..+.+++.......++.....+++..+++...++ .....+.. ..+..+-....+..+...+
T Consensus 76 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~-------~~~~~~~~-~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 76 EYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSP-------VQICLATI-GVLWLCTVANFGGARITGQ 147 (438)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch-------HHHHHHHH-HHHHHHHHHHHhCHHHHHH
Confidence 899999999999998888776666665555566666666521111 11111111 1111222233456666666
Q ss_pred HHHHHHHHHHHHhheeeeechh--hhhccCccccc--cccchhhhHHHHHHHhhhccceeeccccccCcchh-hHHhHHH
Q 014330 189 LSIFADIVDLGAMGLVMVEDVM--ISMKQRPALKA--FGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILG 263 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~ 263 (426)
++.+.+...+.....+...... +.....+...+ .+.+.++..++....|+|.|.+......+|+|||+ +.+|++.
T Consensus 148 i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~ 227 (438)
T PRK10655 148 ISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHH
Confidence 6655444333222211111100 00000111111 11234567778888999999999999999999985 5999999
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 014330 264 WCMAFISLLYGSFGALGYFA 283 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~ 283 (426)
.+..++.++|++........
T Consensus 228 ~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999876655443
No 18
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.74 E-value=1.2e-15 Score=151.54 Aligned_cols=344 Identities=12% Similarity=0.049 Sum_probs=208.4
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHh-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccc-cccchhH
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFK-KTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKIN-SFGDLGY 109 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~-~y~~l~~ 109 (426)
|+.+.++.++..++++||+|++.+|.... .+|....++..++.++.....+..+.|...+. |+.. ...+.++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~------P~~gGG~y~y~~ 74 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKK------PELDGGVYSYAK 74 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCCCChhhhHH
Confidence 57899999999999999999999997655 45544345567777777777777777776664 3322 4455588
Q ss_pred HhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHH-HHHhHHHhhhccccccCccch
Q 014330 110 TVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYI-WGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pl~~~~~l~~~~~ 188 (426)
+.+||+.+++..+.+++.......++.....+.+..+++....+ .+...+. ....+..+-....+..|..++
T Consensus 75 ~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 75 AGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG-------NNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred hHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-------CcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999999999988876667777777777777766643221 1111111 111111222233467777777
Q ss_pred HHHHHHHHHHHHhheeeee---ch-hhhhcc--Cccc---ccc-ccchhhhHHHHHHHhhhccceeeccccccCcchhhH
Q 014330 189 LSIFADIVDLGAMGLVMVE---DV-MISMKQ--RPAL---KAF-GDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRF 258 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~---~~-~~~~~~--~~~~---~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 258 (426)
++.+..+..+.....+++. .. .+.... +.+. ... +.+.++..++....|+|.|.+......+|.||+|+.
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~i 227 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccc
Confidence 7766655443322111110 00 111100 1100 001 123456678888999999999999999999998889
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhccccccc----cc----eeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHH
Q 014330 259 GRILGWCMAFISLLYGSFGALGYFAFGEETK----DI----ITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 330 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~----~~----i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~ 330 (426)
+|++..+...+.++|.+..+..+...+.+.. ++ ...+...++...+..+...++.+.+.-.......+.+..
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776655543211 11 111222234455666666777776666666656555544
Q ss_pred hhcCc------------chhhH---HHHHHHHHHHHHhhc-cCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc
Q 014330 331 RFCDY------------RYCLW---LRWAVVLGVSLVALL-VPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE 390 (426)
Q Consensus 331 ~~~~~------------~~~~~---~~~~~~~~~~~va~~-~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~ 390 (426)
.-+++ +.+.. ...++..+..++... .+.++.+.++. .....+.|.++++.++++++++
T Consensus 308 ~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~--~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 308 MAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLA--TSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 43321 11111 111111111111111 13356666653 3345788999999999987653
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=99.74 E-value=7.2e-16 Score=151.90 Aligned_cols=348 Identities=10% Similarity=0.031 Sum_probs=216.7
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhh-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAGVLGLPYTFKK-TGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
+|+.+.++.++..+++++|+|++.+|....+ .|. ..++..++.++........+.|..++. |+.....+..+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~------p~~Gg~y~~~~ 74 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAML------PVAGSPYTYAY 74 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCcceeeHH
Confidence 5789999999999999999999999966554 444 356677777888878888888887764 44456667788
Q ss_pred HhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCC---Ccccccc-cccchhHHHHHHhHHHhhhccccccCc
Q 014330 110 TVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNST---TSQTILG-FLSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
+.+||+.+++..+..++........+....++.+..+++..+ ++..+.. .......+..+...+.+-....++.|.
T Consensus 75 ~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~ 154 (429)
T TIGR00909 75 EAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKE 154 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHH
Confidence 999999999999999998888888888888888887776321 1100000 000011111122222222334567788
Q ss_pred cchHHHHHHHHHHHHhheeeeechhhh-hccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchh-hHHhHHH
Q 014330 186 LAPLSIFADIVDLGAMGLVMVEDVMIS-MKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILG 263 (426)
Q Consensus 186 ~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~ 263 (426)
..+++.+.....+..+..+........ ..+..+..+. +..++..++....|+|.|.+......+|+|||+ +.+|++.
T Consensus 155 ~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~ 233 (429)
T TIGR00909 155 SGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPM-GFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAII 233 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCC-cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHH
Confidence 888887776655544433222111110 0111111122 455678889999999999999999999999985 5899999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccc----c---ceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-
Q 014330 264 WCMAFISLLYGSFGALGYFAFGEETK----D---IITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY- 335 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~----~---~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~- 335 (426)
.+..++.++|++.........+.+.. + ....+...++...+..+...+..+.+.-.......+.+...-+++
T Consensus 234 ~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 313 (429)
T TIGR00909 234 LSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGL 313 (429)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999887665544332211 0 111122223455566677777777777666666666666555432
Q ss_pred ----------c--hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcc
Q 014330 336 ----------R--YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQ 389 (426)
Q Consensus 336 ----------~--~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~ 389 (426)
| .+... .++.....++.....+++.+.++. .....+.|++.++..++++|+
T Consensus 314 lP~~~~~~~~~~~~P~~a-~~~~~~i~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~a~~~lr~~ 376 (429)
T TIGR00909 314 LPGSLSKVHPKTGTPHMS-IIIFSLTAALLASLVPLEGLAELT--SIGTLIAFAAVNVAVIILRRR 376 (429)
T ss_pred CcHHHHHcCCCCCCcHHH-HHHHHHHHHHHHHHcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 1 11111 111111122222234566666653 233457777777777777653
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.74 E-value=1.5e-15 Score=149.57 Aligned_cols=240 Identities=10% Similarity=-0.029 Sum_probs=160.8
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .++..++.++........+.|...+. |+.....+.+
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~------P~~GG~y~y~ 74 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKN------PQQGGPIAYA 74 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC------CCCCChhHHH
Confidence 4578999999999999999999999999999888864 66667777777777777777776664 3444444556
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
++ +|++.++...+.++........++.....+++..+++...++ .....+ .+..+..+-+...+..|..++
T Consensus 75 ~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~-------~~~~~~-~~~i~~~~~~ln~~gvk~~~~ 145 (435)
T PRK10435 75 GE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP-------IPAGIA-CIAIVWVFTFVNMLGGTWVSR 145 (435)
T ss_pred HH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh-------HHHHHH-HHHHHHHHHHHHHHhHHHHHH
Confidence 77 799999999988887655555666666777777776642211 111111 111111222334566677777
Q ss_pred HHHHHHHHHHHHhheeeeechh-----hhhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchh-hHHhHH
Q 014330 189 LSIFADIVDLGAMGLVMVEDVM-----ISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRIL 262 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~ 262 (426)
++.+..+..+..+......... ...+++.+..+ .+..++..++....|+|.|.+.+....+|+|||| +++|++
T Consensus 146 i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi 224 (435)
T PRK10435 146 LTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDT-TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLAT 224 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHH
Confidence 7665554443322221111111 00011111111 1456788889999999999999999999999995 599999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q 014330 263 GWCMAFISLLYGSFGALGYFAFG 285 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~~~~gy~~fG 285 (426)
..+..++.++|++..........
T Consensus 225 ~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 225 MLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998877655544
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=99.73 E-value=3.6e-15 Score=148.85 Aligned_cols=342 Identities=11% Similarity=0.089 Sum_probs=204.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPY-TFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+++.+.++..+..++.+||+|++..|. +++.+|- .+++..++.+++....+..+.|...+. |+.....+.
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~------P~aGg~y~y 97 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHR------PSSGSFVSY 97 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCHHHH
Confidence 35788999999999999999999999885 6777776 467788888888888888888887774 555677777
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+|++.++++.+..++.............+.....+ +.... .+.+.+..++..+. -.......|...
T Consensus 98 ~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~~--------~~~~~~~~~~~~l~-~~iN~~gvk~~~ 167 (499)
T PRK15049 98 AREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFGG--------VPQWVFALAALTIV-GTMNMIGVKWFA 167 (499)
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCC--------CcHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 899999999999999988865544443343444443322 11111 12222222222222 233445666666
Q ss_pred hHHHHHHHHHHHHhheeeee-----chhhhhc-cC------cccccc--ccchhhhHHHHHHHhhhccceeeccccccCc
Q 014330 188 PLSIFADIVDLGAMGLVMVE-----DVMISMK-QR------PALKAF--GDFSVFSYGIGVAVYAFEGVGMILPLESETR 253 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~-----~~~~~~~-~~------~~~~~~--~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 253 (426)
+++....+..+..++.+++. ......+ .. .+...+ +++..+..++....|+|.|.+.+....+|+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 66655443222221111100 0000000 00 000000 1223345556678999999999999999999
Q ss_pred chhh-HHhHHHHHHHHHHHHHHHHhhhhhhcccccccc----ce---eccccCChhhHHHHHHHHHHHHhhccccccchH
Q 014330 254 NKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETKD----II---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVY 325 (426)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~----~i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~ 325 (426)
||+| .+|++..+.....++|+..........+.+..+ +. .......+...+.++...+..+.+.--..+...
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~s 327 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTG 327 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9966 999999999999999998776555544432111 11 111222233455666666666666666666666
Q ss_pred HHHHHhhcCcc------------hhh---HHHHHHHHHHHHHhhccCC--cchhhhhcchhhhhhHHHHhhhHHHHhhhc
Q 014330 326 EVVERRFCDYR------------YCL---WLRWAVVLGVSLVALLVPN--FADFLSLVGSSVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 326 ~~l~~~~~~~~------------~~~---~~~~~~~~~~~~va~~~p~--~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~ 388 (426)
+.+...-+++. .+. +...++..+..++....|+ ++.++++ +.....+.|++|++.+++.||
T Consensus 328 R~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~--~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 328 RILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNF--ASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 76655554321 111 1111111122222223332 5556666 345567899999999998876
Q ss_pred c
Q 014330 389 Q 389 (426)
Q Consensus 389 ~ 389 (426)
+
T Consensus 406 ~ 406 (499)
T PRK15049 406 A 406 (499)
T ss_pred h
Confidence 3
No 22
>PRK11021 putative transporter; Provisional
Probab=99.72 E-value=8.1e-15 Score=143.39 Aligned_cols=336 Identities=14% Similarity=0.085 Sum_probs=198.6
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhh
Q 014330 34 STRSKTFANVFISIVGAGVLGLPYT-FKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVC 112 (426)
Q Consensus 34 ~s~~~~~~~l~~~~iG~GiL~LP~a-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~ 112 (426)
.+.++++...++++||+|++.+|-. .+.+|- ..++..++.++........+.|...+. |+........++.+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~------P~aGG~y~y~~~~~ 73 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHF------PHAGGPAHFVGMAF 73 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCHHHhHHHHh
Confidence 3678999999999999999999955 555664 477888888888888888888888775 44456667788999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHH
Q 014330 113 GSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIF 192 (426)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~ 192 (426)
||+.++...+..++.......+......+.+...++... | ......... ...+-+...++.|..++++..
T Consensus 74 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~-~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 74 GPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS----W-----QLLLAELLT-LALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC----c-----hHHHHHHHH-HHHHHHHHHhhHHHHHHHHHH
Confidence 999999999888765444444444445555555554211 1 111111111 122223445677777777766
Q ss_pred HHHHHHHHhheeeeechhhhhc-cCccccccccchhhhHHHHHHHhhhccceeeccccccCcchh-hHHhHHHHHHHHHH
Q 014330 193 ADIVDLGAMGLVMVEDVMISMK-QRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRILGWCMAFIS 270 (426)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~~~~~~~~~ 270 (426)
..+..+............+..+ ..++..+. ++.++..++....|+|.|.+......+|+|||+ +++|++..+..++.
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~ 222 (410)
T PRK11021 144 IALLIVALVVAIWWAGDIKPADIPFPAPGSI-EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAG 222 (410)
T ss_pred HHHHHHHHHHHHHHHcCCchhcCCCCCCCCc-cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 5544333222221111000000 11111112 566788899999999999999999999999985 49999999999999
Q ss_pred HHHHHHhhhhh--hcccccccc--ce---ecc-ccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-------
Q 014330 271 LLYGSFGALGY--FAFGEETKD--II---TTN-FGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY------- 335 (426)
Q Consensus 271 ~~Y~~~~~~gy--~~fG~~~~~--~i---~~~-~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~------- 335 (426)
++|++...... ..+++...+ .. ... +++ +...+..+...+..+.+.........+.+...-+++
T Consensus 223 ~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~ 301 (410)
T PRK11021 223 LVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGG-YALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLA 301 (410)
T ss_pred HHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHH
Confidence 99999876532 222222111 10 111 111 122333444445555554444444455554443321
Q ss_pred -----chhhH---HHHHHHHHHHHHh-hccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc
Q 014330 336 -----RYCLW---LRWAVVLGVSLVA-LLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE 390 (426)
Q Consensus 336 -----~~~~~---~~~~~~~~~~~va-~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~ 390 (426)
+.+.. ...++..+..++. ....+++.+.+... ....+.|.++.+..+|++|++
T Consensus 302 k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 302 RLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 11111 1111111111111 12356777777643 445688888888888887654
No 23
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.72 E-value=4.4e-15 Score=147.78 Aligned_cols=348 Identities=12% Similarity=0.040 Sum_probs=205.8
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCc-cccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWI-MGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSK-INSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~-~~~y~~ 106 (426)
+++|+.|.+++++..+++++|+|++.+|....+.|-. ..++..++.++........+.|..++. |+ .....+
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~------P~~sGG~y~ 77 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKK------PELDGGIYA 77 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCCCChhh
Confidence 3468899999999999999999999999887765533 345667777887777888888877764 44 444555
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
..++.+||+.+++..+.+++.......++.....+.+..+++....+..+ ......+...+..-....++.|..
T Consensus 78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~------~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 78 YAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPV------PSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcH------HHHHHHHHHHHHHHHHHHhCHHHH
Confidence 67999999999999999888766666777777777777776632211000 111111222222223445677777
Q ss_pred chHHHHHHHHHHHHhheeeee-----chhhhh-ccCccccc--cccchhhhHHHHHHHhhhccceeeccccccCcchhhH
Q 014330 187 APLSIFADIVDLGAMGLVMVE-----DVMISM-KQRPALKA--FGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRF 258 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~ 258 (426)
++++.+.....+...+.+.+. ...+.. +.+++..+ .+.+..+..++....|+|.|.+......+|+||+|+.
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~i 231 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccc
Confidence 777776665433322221111 111100 00111000 1134467778888999999999999999999996669
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhccccccc----cc-e---eccccCChhhHHHHHHHHHHHHhhccccccchHHHHHH
Q 014330 259 GRILGWCMAFISLLYGSFGALGYFAFGEETK----DI-I---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 330 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~----~~-i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~ 330 (426)
+|++..+..++.++|++.........+.+.. ++ . .......+...+..+...++.+.+.-.......+.+..
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887765544433211 11 1 11111122333444444455544444444444444444
Q ss_pred hhcCc------------chhhHHHHHHHHHHH--HHhhc--cCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc
Q 014330 331 RFCDY------------RYCLWLRWAVVLGVS--LVALL--VPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE 390 (426)
Q Consensus 331 ~~~~~------------~~~~~~~~~~~~~~~--~va~~--~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~ 390 (426)
.-+++ +.+...-.....++. .+... .++++.+.++. .....+.|.++.+..++.+|++
T Consensus 312 mardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLA--VVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHhCCChhHHHHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcC
Confidence 33321 111111111111111 11111 23456666653 3445688888888888887654
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=99.72 E-value=5.7e-15 Score=146.25 Aligned_cols=338 Identities=13% Similarity=0.085 Sum_probs=204.8
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPY-TFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++..+..++.++|+|++.+|- +.+++|. ..++..++.+++....+..+.|...+. |......+.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~------P~~Gg~~~y 90 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEE------PVSGSFAHF 90 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCHHHH
Confidence 46788999999999999999999999884 5656676 477888888999998898888888774 555677778
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+|+..+++..+.+++.......+.....+..++.+.++. +.+.+..+...+. -....++.|..+
T Consensus 91 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~~l~-~~lN~~gv~~~~ 158 (458)
T PRK10249 91 AYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-----------PTWIWAAAFFIII-NAVNLVNVRLYG 158 (458)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----------cHHHHHHHHHHHH-HHHHHhcchhhh
Confidence 9999999999999999988876666666666777776655421 1122222222221 223445666666
Q ss_pred hHHHHHHHHHHHHhhe------ee-eechhh---hhcc-C--ccccccccchhhhHHHHHHHhhhccceeeccccccCcc
Q 014330 188 PLSIFADIVDLGAMGL------VM-VEDVMI---SMKQ-R--PALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN 254 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~------~~-~~~~~~---~~~~-~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 254 (426)
+++....+..+..+.. .. ...... ..++ + ++..+ +++.++..++....|+|.|.+......+|+||
T Consensus 159 ~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 159 ETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFA-TGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCC-CcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 6554433222211111 11 011000 0000 0 11111 25667888999999999999999999999999
Q ss_pred hhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccccc----ccee---ccccCChhhHHHHHHHHHHHHhhccccccchHH
Q 014330 255 KQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETK----DIIT---TNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYE 326 (426)
Q Consensus 255 ~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~----~~i~---~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~ 326 (426)
|+| .+|++..+.....++|.+.........+++.. ++.. .+........+..++..+..+.+..-..+...+
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR 317 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865 99999999999999998765544444332211 1111 111112334444445555555555444455555
Q ss_pred HHHHhhcCcc------------hhh---HHHHHHHHHHHHHhhccCC--cchhhhhcchhhhhhHHHHhhhHHHHhhhc
Q 014330 327 VVERRFCDYR------------YCL---WLRWAVVLGVSLVALLVPN--FADFLSLVGSSVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 327 ~l~~~~~~~~------------~~~---~~~~~~~~~~~~va~~~p~--~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~ 388 (426)
.+...-+++. .+. +...++..+..++....|+ ++.+.+.. .....+.|++|++.+++.||
T Consensus 318 ~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 318 MLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALV--VATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5544443211 111 1111111112222222332 44555543 33457899999999999885
No 25
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.71 E-value=6.9e-15 Score=145.42 Aligned_cols=241 Identities=12% Similarity=0.012 Sum_probs=157.1
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
+.+|+.+.++.++..++.++|+|++.+|...++.|.. .+...++.++........+.|..... |+.....+.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~------P~aGG~y~~~ 77 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLD------PSPGGSYAYA 77 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC------CCCCChhHHH
Confidence 3568899999999999999999999999888887753 55666666777777777777777764 3444444558
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
++.+||+.+++..+..++.......+......++...+.+...++ | ......+.....+-.......|...+
T Consensus 78 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP--L------VLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc--H------HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 899999999999988887765555555555556666555432111 0 11111111111222334456677777
Q ss_pred HHHHHHHHHHHHhheeeeech---h-hh-hccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchh-hHHhHH
Q 014330 189 LSIFADIVDLGAMGLVMVEDV---M-IS-MKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFGRIL 262 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~---~-~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~~~~ 262 (426)
++.+.+...+..+........ . +. .+.++ ....++...+..++....|+|.|.+......+|+|||| +.+|++
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 766555444332221111111 1 00 11110 01111344566778889999999999999999999995 599999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q 014330 263 GWCMAFISLLYGSFGALGYFAFG 285 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~~~~gy~~fG 285 (426)
..+..++.++|.+.........+
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999998877554443
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.70 E-value=1.1e-14 Score=144.91 Aligned_cols=287 Identities=11% Similarity=-0.008 Sum_probs=174.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYT-FKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++..+..++.++|+|++..|-. .+.+|-...++..++.+++.......+.|...+. |+...+.+.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~------P~aGG~y~y 84 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAM------PETGAFHVY 84 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCHHHH
Confidence 457889999999999999999999988854 5677765457778888888888888888888775 444556678
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
.++.+|++.+++..+..++.............+..++.+.++. ..+....+...+. -....++.|...
T Consensus 85 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----------~~~~~~~~~~~~~-~~in~~gvk~~~ 152 (471)
T PRK11387 85 AARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV-----------PVWPWCLLFCALI-FGLNVVSTRFFA 152 (471)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC-----------cHHHHHHHHHHHH-HHHHHHhHHHHH
Confidence 8999999999999999888766665555555554454444321 1111111111111 223345555555
Q ss_pred hHHHHHHHHHHHHhheeee------e--chh-hh-----hccCccccc-cccchhhhHHHHHHHhhhccceeeccccccC
Q 014330 188 PLSIFADIVDLGAMGLVMV------E--DVM-IS-----MKQRPALKA-FGDFSVFSYGIGVAVYAFEGVGMILPLESET 252 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~------~--~~~-~~-----~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 252 (426)
+.+.......+..++.++. . ... .. .++...... ..+..++..++....|+|.|.+.+....+|+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 5443332222211111110 0 000 00 000000000 0122346777778899999999999999999
Q ss_pred cchhh-HHhHHHHHHHHHHHHHHHHhhhhhhcccccccc----c---eeccccCChhhHHHHHHHHHHHHhhccccccch
Q 014330 253 RNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETKD----I---ITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPV 324 (426)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~----~---i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~ 324 (426)
|||+| ++|++..+..++.++|+..........+.+..+ + ...+....+...+..++..++.+.+.--..+..
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~ 312 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYAS 312 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99965 999999999999999998876554444322111 1 111222223444555555555555554445555
Q ss_pred HHHHHHhhc
Q 014330 325 YEVVERRFC 333 (426)
Q Consensus 325 ~~~l~~~~~ 333 (426)
.+.+...-+
T Consensus 313 sR~l~a~ar 321 (471)
T PRK11387 313 GRMLWSLSN 321 (471)
T ss_pred hHHHHHHHh
Confidence 555554443
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.70 E-value=1.3e-14 Score=143.60 Aligned_cols=342 Identities=11% Similarity=0.046 Sum_probs=210.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhh-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLP-YTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP-~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++..+..++.+||+|++..| .+.+.+|. ..++..++.+++....+..+.|..... |+...+.+.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~------P~sGg~~~y 79 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE------PVTGSFAVY 79 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCHHHH
Confidence 4578899999999999999999999988 56777787 466778888888888888888887774 566677888
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+|++.++...+.+++.......+.....+..++.++++. +.+.+..++..+. -.......|..+
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-----------~~~~~~~~~~~~~-~~lN~~gv~~~~ 147 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-----------AQWIPALIAVALV-ALANLAAVRLYG 147 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------chHHHHHHHHHHH-HHHHHHhHHHHH
Confidence 9999999999999999998877777777777778877776531 1122222211111 122334555554
Q ss_pred hHHHHHHHHHHHH------hhe--e-eeechh-h--hhccCcccc-c-cccchhhhHHHHHHHhhhccceeeccccccCc
Q 014330 188 PLSIFADIVDLGA------MGL--V-MVEDVM-I--SMKQRPALK-A-FGDFSVFSYGIGVAVYAFEGVGMILPLESETR 253 (426)
Q Consensus 188 ~~s~~~~~~~~~~------~~~--~-~~~~~~-~--~~~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 253 (426)
.++.......+.. ... . ...... + ...+..+.. . .+++.++..++....|+|.|.+.+....+|+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 4443322211111 111 1 110000 0 011110000 0 12456778999999999999999999999999
Q ss_pred chhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccccccc----e---eccccCChhhHHHHHHHHHHHHhhccccccchH
Q 014330 254 NKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETKDI----I---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVY 325 (426)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~----i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~ 325 (426)
|||| ++|++..+.....++|.+...........+..+. . ..+........+.+.+..+..+.+.-...+...
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9965 9999999999999999986555544443332211 1 111111223345566666666666666666777
Q ss_pred HHHHHhhcCcc------------hhhH---HHHHHHHHHHHHhhccCCcchhhhhcch--hhhhhHHHHhhhHHHHhhhc
Q 014330 326 EVVERRFCDYR------------YCLW---LRWAVVLGVSLVALLVPNFADFLSLVGS--SVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 326 ~~l~~~~~~~~------------~~~~---~~~~~~~~~~~va~~~p~~~~i~~~~G~--~~~~~~~~ilP~l~~~~~~~ 388 (426)
+.+...-+++. .+.. ...+..++...+....|+.+.+++..-+ .....+.++.+++.+++.||
T Consensus 308 R~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRR 387 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766554321 1111 1111111122233334544444444332 23347888899999999987
Q ss_pred c
Q 014330 389 Q 389 (426)
Q Consensus 389 ~ 389 (426)
+
T Consensus 388 ~ 388 (461)
T PRK10746 388 A 388 (461)
T ss_pred h
Confidence 4
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.70 E-value=1.2e-14 Score=144.55 Aligned_cols=342 Identities=11% Similarity=0.066 Sum_probs=199.0
Q ss_pred cCCCCCCChHHHHHHHHHHhhhhhhchhh-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 28 TKSKPLSTRSKTFANVFISIVGAGVLGLP-YTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 28 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP-~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
++.+|+.+.++.....++++||+|++..| .+++++|. ..++..++.+++......-+.|..... +....+.+
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~------~~~~~~~~ 88 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN------LEYKSFSD 88 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcHHH
Confidence 45789999999999999999999999987 57778887 467777788887777777777765532 33345567
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
.+++.+||..+++..+.+++.......+.....+..+..+.+.. ..+.+..++..+. -.....+.|..
T Consensus 89 ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-----------~~~~~~~~~~~~~-~~iN~~g~~~~ 156 (469)
T PRK11049 89 FASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-----------SDWVASLAVVLLL-LSLNLATVKMF 156 (469)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------cHHHHHHHHHHHH-HHHHHHhHHHH
Confidence 89999999999999999998776555566666676776665431 1122222211111 22334556666
Q ss_pred chHHHHHHHHHHHHhheeeeec-------h--hhh----hcc-Cc--cccccccchhhhHHHHHHHhhhccceeeccccc
Q 014330 187 APLSIFADIVDLGAMGLVMVED-------V--MIS----MKQ-RP--ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLES 250 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~-------~--~~~----~~~-~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 250 (426)
++++.+.....+..+..+++.. . .+. ..+ ++ ...+ .++.++..++....|+|.|.+.+....+
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~~~~~~~~~~~~af~G~e~~~~~a~ 235 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFP-KGLSGFFAGFQIAVFAFVGIELVGTTAA 235 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCc-ccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 6666444433222221111110 0 000 000 00 0111 1345688899999999999999999999
Q ss_pred cCcchhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccccc----cce---eccccCChhhHHHHHHHHHHHHhhcccccc
Q 014330 251 ETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETK----DII---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMN 322 (426)
Q Consensus 251 ~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~----~~i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~ 322 (426)
|+|||+| .+|++..+.....+.|.+........-+.+.. +.. .......+...+..++..+..+.+.-....
T Consensus 236 E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~ 315 (469)
T PRK11049 236 ETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVF 315 (469)
T ss_pred HhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999965 99999877778888888776665443222211 111 111111233344455555555554444444
Q ss_pred chHHHHHHhhcCc------------chhhH---HHHHHHHHHHHHhhccCCcchhhhhcc--hhhhhhHHHHhhhHHHHh
Q 014330 323 PVYEVVERRFCDY------------RYCLW---LRWAVVLGVSLVALLVPNFADFLSLVG--SSVCCILGFVLPALFHLI 385 (426)
Q Consensus 323 ~~~~~l~~~~~~~------------~~~~~---~~~~~~~~~~~va~~~p~~~~i~~~~G--~~~~~~~~~ilP~l~~~~ 385 (426)
...+.+...-+++ +.+.. ...++..+..++....|+.....+..- +.....+.|.++++.+++
T Consensus 316 ~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 316 STSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443321 11111 111111111222334455433333322 223345778888888888
Q ss_pred hhcc
Q 014330 386 VFKQ 389 (426)
Q Consensus 386 ~~~~ 389 (426)
.+|+
T Consensus 396 lr~~ 399 (469)
T PRK11049 396 YRKQ 399 (469)
T ss_pred HHHh
Confidence 8764
No 29
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.70 E-value=7.7e-16 Score=146.74 Aligned_cols=353 Identities=12% Similarity=0.122 Sum_probs=226.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhh-hcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKK-TGWI-MGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~-~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+.+|+.+.+.+++.+++++||+|++.-|....+ +|-+ .+++..++.++++...+....|.....+ +..-...
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ip------ksGgd~a 82 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIP------KSGGDYA 82 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc------CCCcchh
Confidence 457899999999999999999999999977554 5443 3666788889999999998888766543 2222223
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhh-HHHHHHHHhh-hhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccC
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFC-VSYLIFIANT-LTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLT 184 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~-~~y~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 184 (426)
...++||+...+...+.-.+...... ..+....+++ +++.++. .+.. ......+... .+..+-+....+.|
T Consensus 83 yi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~p-----~~~~~lla~~-~l~~lt~~n~~~V~ 155 (479)
T KOG1287|consen 83 YISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDVP-----RVASKLLAAA-LLVLLTLINSFSVK 155 (479)
T ss_pred hHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCCc-----hHHHHHHHHH-HHHHHHHHhhhhhh
Confidence 35577888877766666555555554 6777788887 8888873 2211 1122222222 22222344456777
Q ss_pred ccchHHHHHHHHHHHHhheeeeechhh----hhcc--Cccccc-cccchhhhHHHHHHHhhhccceeeccccccCcchhh
Q 014330 185 HLAPLSIFADIVDLGAMGLVMVEDVMI----SMKQ--RPALKA-FGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR 257 (426)
Q Consensus 185 ~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 257 (426)
..++++.+.+++-+.++..+.+-+... ..++ +++... -.+..++..++-...|||.|.+.+-...+|+|||+|
T Consensus 156 ~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k 235 (479)
T KOG1287|consen 156 WATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc
Confidence 788888777776666555554322211 1111 010111 125567889999999999999999999999999966
Q ss_pred -HHhHHHHHHHHHHHHHHHHhhhhhhccccccc--cc-eeccccCC---hhhHHHHHHHHHHHHhhccccccchHHHHHH
Q 014330 258 -FGRILGWCMAFISLLYGSFGALGYFAFGEETK--DI-ITTNFGAG---LVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 330 (426)
Q Consensus 258 -~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~--~~-i~~~~~~~---~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~ 330 (426)
+||++.+++.++++.|+++.+..+..-..+.. ++ +...+.+. .......++..++.+.+.-..++...+.+..
T Consensus 236 tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~ 315 (479)
T KOG1287|consen 236 TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYA 315 (479)
T ss_pred cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999998876665533221 11 11112221 1113444445555555554555555454444
Q ss_pred hhcC------------cchhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCchh
Q 014330 331 RFCD------------YRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWN 394 (426)
Q Consensus 331 ~~~~------------~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~ 394 (426)
..++ ++...+...++.....++..+.+|++.++++.+-.........+=+++++|.++++.++.
T Consensus 316 ~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 316 GAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 4332 111223344455555666667789999999988777777777778888888887654443
No 30
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.70 E-value=1.9e-14 Score=142.59 Aligned_cols=286 Identities=11% Similarity=0.042 Sum_probs=184.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhh-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLP-YTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP-~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++..+..++++||+|++.+| .++++.|.. +++..++.+++....+..+.|...+. |+.....+.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~------P~~Gg~~~~ 81 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVAN------PDTGSFSTY 81 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCHHHH
Confidence 5689999999999999999999999999 667788864 77888888888888888888887764 455566778
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+||+.+++..+.+++.....+.+.....++.++.+.++ .+.+.+..++..+ .-.......+...
T Consensus 82 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~-~~~~n~~gv~~~~ 149 (452)
T TIGR01773 82 ADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-----------IPLWLFSLILTIV-LTLTNLYSVKSYG 149 (452)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------CcHHHHHHHHHHH-HHHHHHHhcchhh
Confidence 999999999999999999888777777777788888776653 1122222222211 2233445666666
Q ss_pred hHHHHHHHHHHHHhheee------ee-chhh-h---hccCccccc--cccchhhhHHHHHHHhhhccceeeccccccCcc
Q 014330 188 PLSIFADIVDLGAMGLVM------VE-DVMI-S---MKQRPALKA--FGDFSVFSYGIGVAVYAFEGVGMILPLESETRN 254 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~------~~-~~~~-~---~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 254 (426)
+++....+..+.....++ .. .... . ..+..+... .+++.++..++....|+|.|.+......+|+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 666544433222111111 00 0000 0 000000000 113456888999999999999999999999999
Q ss_pred hh-hHHhHHHHHHHHHHHHHHHHhhhhhhcccccccc-----c---eeccccCChhhHHHHHHHHHHHHhhccccccchH
Q 014330 255 KQ-RFGRILGWCMAFISLLYGSFGALGYFAFGEETKD-----I---ITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVY 325 (426)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~-----~---i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~ 325 (426)
|+ +.+|++..+......+|++.........+.+..+ + ..+.........+......+..+.+..-......
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 5999999989999999998765544443322211 1 1111222233444455555555555555555556
Q ss_pred HHHHHhhc
Q 014330 326 EVVERRFC 333 (426)
Q Consensus 326 ~~l~~~~~ 333 (426)
+.+...-+
T Consensus 310 R~~~a~ar 317 (452)
T TIGR01773 310 RMLYSLAE 317 (452)
T ss_pred HHHHHHHh
Confidence 66555443
No 31
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.69 E-value=2.9e-15 Score=140.54 Aligned_cols=339 Identities=13% Similarity=0.107 Sum_probs=236.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|..+.++--+.-++..||+|. ++-..+.+.+|.- -++..++.+++.++-++.+.|.... +|...++.+.
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~------~p~~gSF~~~ 82 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA------NPVSGSFSDY 82 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCCcHHHH
Confidence 356788888888999999999997 5677889999876 5677888899999999999888665 4677899999
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHH--HHhHHHhhhccccccCc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIW--GCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~pl~~~~~l~~ 185 (426)
+++++|++++++..+.++++....+++.++.++.+++.|+|+.+ .|.... +......-+...|...+
T Consensus 83 a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP-----------~Wv~al~~~~l~~~~NL~sVk~FGE 151 (462)
T COG1113 83 ARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP-----------QWVFALAAVVLLLAVNLISVKVFGE 151 (462)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999752 222222 23333344556677777
Q ss_pred cchHHHHHHHHHHHHhheeee----echhhh-----hcc---CccccccccchhhhHHHHHHHhhhccceeeccccccCc
Q 014330 186 LAPLSIFADIVDLGAMGLVMV----EDVMIS-----MKQ---RPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETR 253 (426)
Q Consensus 186 ~~~~s~~~~~~~~~~~~~~~~----~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 253 (426)
+..+..+..+..+..++++.. .....+ .++ +....+ +++.++..++.+.+|||.+.+.+-....|-|
T Consensus 152 ~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP-~G~~g~~~~~~~v~Faf~GiElvGitA~Et~ 230 (462)
T COG1113 152 LEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFP-NGFLGFLSALQIVMFAFGGIELVGITAAEAK 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCC-CchHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 766665555444443333221 111111 111 111122 3677899999999999999999999999999
Q ss_pred chhh-HHhHHHHHHHHHHHHHHHHhhhhhhcc-----ccccccc--eeccccCChhhHHHHHHHHHHHHhhccccccchH
Q 014330 254 NKQR-FGRILGWCMAFISLLYGSFGALGYFAF-----GEETKDI--ITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVY 325 (426)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~f-----G~~~~~~--i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~ 325 (426)
||+| .+|++..-..-..++|..-=++-...+ +++..+. +....+......+.++..+.+...+.--.++...
T Consensus 231 dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglysts 310 (462)
T COG1113 231 DPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTS 310 (462)
T ss_pred ChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccc
Confidence 9977 788888888778888874333333333 2322221 2333344466677777788888888888889999
Q ss_pred HHHHHhhcCcc---------------hhhHHHHHHHHHHHHHhhccCC--cchhhhhcchhhhhhHHHHhhhHHHHhhhc
Q 014330 326 EVVERRFCDYR---------------YCLWLRWAVVLGVSLVALLVPN--FADFLSLVGSSVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 326 ~~l~~~~~~~~---------------~~~~~~~~~~~~~~~va~~~p~--~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~ 388 (426)
+.+..+-++.+ .......+...+..++....|+ |+.+.+..+ ......+.+=.+.++|.||
T Consensus 311 RmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~--~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 311 RMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG--LGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred hHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 99988754321 1122445556666777788884 444444432 3334555555677888888
No 32
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.68 E-value=2.3e-14 Score=144.55 Aligned_cols=348 Identities=15% Similarity=0.080 Sum_probs=217.9
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHH--hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTF--KKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~--~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+.+|+.+.++.++..++.++|+|++.+|-.. ..+|.. .++..++.++.+...+..+.|...+. |+......
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~------P~sGg~Y~ 97 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARV------PKAGSAYL 97 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCccee
Confidence 4689999999999999999999999999643 346765 66778888888888888888888775 34444445
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCC----cc-cccccc--cchhHHHHHHhHHHhhhcc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTT----SQ-TILGFL--SPKALYIWGCFPFQLGLNS 179 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~----~~-~~~~~~--~~~~~~~~~~~~~~~pl~~ 179 (426)
..++.+|+..++++.+..++.......+.....+++++.++..... .. .+.... ....... +..++.+-...
T Consensus 98 y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a-~~ii~l~~~ln 176 (557)
T TIGR00906 98 YSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFA-VCLILLLAVLL 176 (557)
T ss_pred eHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHH-HHHHHHHHHHH
Confidence 5778899999999999988877766666666666666665542100 00 000000 0111111 11112222344
Q ss_pred ccccCccchHHHHHHHHHHHHhheeeeechhh-hhccCc--------cccccccchhhhHHHHHHHhhhccceeeccccc
Q 014330 180 IPTLTHLAPLSIFADIVDLGAMGLVMVEDVMI-SMKQRP--------ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLES 250 (426)
Q Consensus 180 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 250 (426)
.++.|..++++.+.+...+..+..+++..... ...++. +..++ ++.+++.+.....|+|.|.+.+....+
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~-g~~g~l~g~~~~~faf~Gfd~v~~~ae 255 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPY-GFTGVLSGAATCFFAFIGFDAIATTGE 255 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCc-chHHHHHHHHHHHHHHhhHHHHHHhHH
Confidence 57888888888777666555444333322211 001111 12222 445788889999999999999999999
Q ss_pred cCcchhh-HHhHHHHHHHHHHHHHHHHhhhhhhcccccc---ccc---eeccccCChhhHHHHHHHHHHHHhhccccccc
Q 014330 251 ETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEET---KDI---ITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNP 323 (426)
Q Consensus 251 ~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~---~~~---i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~ 323 (426)
|.|||+| .+|++..+..+++++|.++...-...-+.+. .+. .....+.++...+..+...+..+.+.....+.
T Consensus 256 E~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~ 335 (557)
T TIGR00906 256 EVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFP 335 (557)
T ss_pred hccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999966 9999999999999999998766554433221 111 11222223455555666666666666555666
Q ss_pred hHHHHHHhhcCc-----------c--hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhc
Q 014330 324 VYEVVERRFCDY-----------R--YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 324 ~~~~l~~~~~~~-----------~--~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~ 388 (426)
..+.+...-+++ | .+.........++.+++.+ .+++.+.++. ..+..+.|.++++..+.+|+
T Consensus 336 ~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~-~~~~~l~~l~--sig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 336 LPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL-FDLKALVDLL--SIGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH-cCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666665554432 1 1122222223333344433 3566666663 34457889999888877774
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.66 E-value=7.1e-14 Score=138.37 Aligned_cols=340 Identities=11% Similarity=0.061 Sum_probs=203.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYT-FKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++..+..++.+||+|++..|.. .+++|. ..++..++.+++....+..+.|...+. |....+.+.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~------P~aGg~y~~ 81 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE------PVAGSFSHF 81 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCHHHH
Confidence 468999999999999999999999999855 555665 567778888888888888888877774 555677777
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+||..+++..+..++.......+.....++.++.+.++. +.+.+..+...+. -.......|...
T Consensus 82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----------~~~~~~~i~~~~~-~~lN~~gv~~~~ 149 (456)
T PRK10238 82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI-----------PTWVSAAVFFVVI-NAINLTNVKVFG 149 (456)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----------cHHHHHHHHHHHH-HHHHHHhHHHHH
Confidence 8899999999999999999988888888888888887765531 1222222221121 122233445555
Q ss_pred hHHHHHHHHHHHHhhe------ee-eechhhh---hcc-Cccc-cccccchhhhHHHHHHHhhhccceeeccccccCcch
Q 014330 188 PLSIFADIVDLGAMGL------VM-VEDVMIS---MKQ-RPAL-KAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK 255 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~------~~-~~~~~~~---~~~-~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 255 (426)
+++....+..+..+++ .. ....... ..+ +++. +..+.+.++..++....|+|.|.+......+|+|||
T Consensus 150 ~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP 229 (456)
T PRK10238 150 EMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh
Confidence 5554433332221111 11 1110000 000 1100 001134466677888999999999999999999999
Q ss_pred hh-HHhHHHHHHHHHHHHHHHHhhhhhhccccc-c---ccce---eccccCChhhHHHHHHHHHHHHhhccccccchHHH
Q 014330 256 QR-FGRILGWCMAFISLLYGSFGALGYFAFGEE-T---KDII---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEV 327 (426)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~-~---~~~i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~ 327 (426)
+| .+|++..+.....+.|..........-..+ . .++. ..+........+.+....+..+.+..-..+...+.
T Consensus 230 ~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~ 309 (456)
T PRK10238 230 EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRM 309 (456)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 999999888888888876543322111111 1 0111 11222223344455555555555555556666666
Q ss_pred HHHhhcCcc------------hhhH---HHHHHHHHHHHHhhccCC--cchhhhhcchhhhhhHHHHhhhHHHHhhhcc
Q 014330 328 VERRFCDYR------------YCLW---LRWAVVLGVSLVALLVPN--FADFLSLVGSSVCCILGFVLPALFHLIVFKQ 389 (426)
Q Consensus 328 l~~~~~~~~------------~~~~---~~~~~~~~~~~va~~~p~--~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~ 389 (426)
+...-+++. .+.. ...++..+..+.....|+ ++.+.++ +..+..+.|.+|++.+++.||+
T Consensus 310 l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 310 LFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMAL--VVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 655443221 1111 111111111111112232 5555665 3345568999999999998873
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.65 E-value=1e-13 Score=138.59 Aligned_cols=287 Identities=12% Similarity=0.068 Sum_probs=168.1
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPY-TFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++..+..++++||+|++.+|. +.+++|....++..++.+++....+..+.|...+. |+.....+.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~------P~sGg~y~y 85 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM------PVSGSFATY 85 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHH
Confidence 56788999999999999999999999995 67777865468888999999999999999988885 555666677
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++++|+..+++..+.+++................+..+.++. +.+.+..++..+. -.....+.|..+
T Consensus 86 ~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~lN~~gv~~~~ 153 (489)
T PRK10836 86 GQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT-----------PGWIWSALFLGVI-FLLNYISVRGFG 153 (489)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----------chHHHHHHHHHHH-HHHHHHcchhhh
Confidence 8889999998888888776543333222222333333333321 1111111111111 122333444444
Q ss_pred hHHHHHHHHHH------HHhheeeeech-hh----hhccCcc-cccc-ccchhhhHHHHHHHhhhccceeeccccccCcc
Q 014330 188 PLSIFADIVDL------GAMGLVMVEDV-MI----SMKQRPA-LKAF-GDFSVFSYGIGVAVYAFEGVGMILPLESETRN 254 (426)
Q Consensus 188 ~~s~~~~~~~~------~~~~~~~~~~~-~~----~~~~~~~-~~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 254 (426)
..+....+..+ ........... .. ...+..+ ..++ +.+..+..+.....|+|.|.+.+....+|+||
T Consensus 154 ~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn 233 (489)
T PRK10836 154 EAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED 233 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 43322221111 11111111000 00 0001100 0011 13334555555667999999999999999999
Q ss_pred hhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccccccceec---------------cccCChhhHHHHHHHHHHHHhhcc
Q 014330 255 KQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITT---------------NFGAGLVSTLVNVGLCVNLFLTFP 318 (426)
Q Consensus 255 ~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~---------------~~~~~~~~~~~~i~~~~~~~~s~p 318 (426)
||| .+|++..+...+.++|.+.........+.+..+.... +........+..++..+.++.+.-
T Consensus 234 P~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n 313 (489)
T PRK10836 234 PAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGN 313 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence 965 9999999999999999988766555443221111100 111112234445555556666655
Q ss_pred ccccchHHHHHHhhc
Q 014330 319 LMMNPVYEVVERRFC 333 (426)
Q Consensus 319 l~~~~~~~~l~~~~~ 333 (426)
-..+...+.+...-+
T Consensus 314 ~~~~~~sR~l~a~Ar 328 (489)
T PRK10836 314 SGMYASTRMLYTLAC 328 (489)
T ss_pred HHHHHHHHHHHHHHc
Confidence 555666666655443
No 35
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.64 E-value=2e-13 Score=136.34 Aligned_cols=339 Identities=13% Similarity=0.034 Sum_probs=202.4
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhh-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAGVLGLP-YTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~GiL~LP-~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
+|+.+.++..+..++.++|+|++..| .+.++.|....++..++.+++.......+.|.....++ ....|.+.++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~-----~gG~~~~~~~ 75 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV-----VSGSFATYAS 75 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCHHHHHH
Confidence 46789999999999999999999877 56667775534667888888888888888888777431 3346778899
Q ss_pred HhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchH
Q 014330 110 TVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPL 189 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~ 189 (426)
+.+|++.+++..+.+++.......+.....+..++.+.++. ....+..+... ..-+...++.|..+++
T Consensus 76 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~in~~gv~~~~~~ 143 (478)
T TIGR00913 76 RFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV-----------NPAVWIAIFYV-FIVIINLFGVKGYGEA 143 (478)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHH-HHHHHHHhcchHHHHH
Confidence 99999999999999998887777777777777776554321 11111111111 1123345667776666
Q ss_pred HHHHHHHHHHHhh---e---eee-echhhh----hcc---Ccccccc---ccchhhhHHHHHHHhhhccceeeccccccC
Q 014330 190 SIFADIVDLGAMG---L---VMV-EDVMIS----MKQ---RPALKAF---GDFSVFSYGIGVAVYAFEGVGMILPLESET 252 (426)
Q Consensus 190 s~~~~~~~~~~~~---~---~~~-~~~~~~----~~~---~~~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 252 (426)
+.......+.... + ... ....+. ... .+...+. +.+.++..++....|+|.|.+......+|+
T Consensus 144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 223 (478)
T TIGR00913 144 EFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA 223 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh
Confidence 6544432221111 1 110 100000 000 0011110 124567888888999999999999999999
Q ss_pred cchhh-HHhHHHHHHHHHHHHHHHHhhhhhhcccccccc-------------ce---eccccCChhhHHHHHHHHHHHHh
Q 014330 253 RNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETKD-------------II---TTNFGAGLVSTLVNVGLCVNLFL 315 (426)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~-------------~i---~~~~~~~~~~~~~~i~~~~~~~~ 315 (426)
|||+| ++|++..+..++.++|.+.........+.+..+ +. ..+....+...+..++..++.+.
T Consensus 224 knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~ 303 (478)
T TIGR00913 224 ANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLS 303 (478)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHH
Confidence 99855 999999999999999998765433333322110 10 11122223444555556666666
Q ss_pred hccccccchHHHHHHhhcCcc------------hhhHHHHHHHHHHHHHhhccC-----CcchhhhhcchhhhhhHHHHh
Q 014330 316 TFPLMMNPVYEVVERRFCDYR------------YCLWLRWAVVLGVSLVALLVP-----NFADFLSLVGSSVCCILGFVL 378 (426)
Q Consensus 316 s~pl~~~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~va~~~p-----~~~~i~~~~G~~~~~~~~~il 378 (426)
+.--......+.+...-+++. .+.........++.+.....+ .++.+.++. .....+.|++
T Consensus 304 ~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~--~~~~~i~y~~ 381 (478)
T TIGR00913 304 AANSSLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNIS--GLSGFFTWMC 381 (478)
T ss_pred HHHhhHHHHHHHHHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH--HHHHHHHHHH
Confidence 655555555666555443211 111111111111111111111 144455542 3345688999
Q ss_pred hhHHHHhhhc
Q 014330 379 PALFHLIVFK 388 (426)
Q Consensus 379 P~l~~~~~~~ 388 (426)
+++.+++.+|
T Consensus 382 ~~~~~i~~r~ 391 (478)
T TIGR00913 382 ICLSHIRFRK 391 (478)
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.64 E-value=3e-13 Score=134.16 Aligned_cols=339 Identities=10% Similarity=0.084 Sum_probs=198.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYT-FKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+|+.+.++.++..+++++|+|++.+|.. .+.+|. ..++..++.++.....+..+.|...+. |+.....+.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~------P~~Gg~y~y 78 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHN------PAASSFSRY 78 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCHHHH
Confidence 457889999999999999999999999855 556676 468888888999899999888888774 455566667
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+++.+||..+++..+.+++.............+..++.+.++. +.+.+...+..+ .-....++.|...
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l-~~~ln~~gv~~~~ 146 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV-----------PHWIWVLSVVLI-ICAVNLMSVKVFG 146 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------ChHHHHHHHHHH-HHHHHHccchhHH
Confidence 8999999999999999888766655555566666666655431 112222222222 2233445667666
Q ss_pred hHHHHHHHHHHHHhhee-------eeechh---hh--hcc-Cc--cccccccchhhhHHHHHHHhhhccceeeccccccC
Q 014330 188 PLSIFADIVDLGAMGLV-------MVEDVM---IS--MKQ-RP--ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESET 252 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~-------~~~~~~---~~--~~~-~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 252 (426)
+++.......+.....+ ...... .. ..+ ++ ...+ .++.++..++....|+|.|.+......+|+
T Consensus 147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFS-NGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCC-cchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 66644333222211111 000000 00 000 11 1111 134467788889999999999999999999
Q ss_pred cchhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccccc----cce---eccccCChhhHHHHHHHHHHHHhhccccccch
Q 014330 253 RNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETK----DII---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPV 324 (426)
Q Consensus 253 ~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~----~~i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~ 324 (426)
|||+| .+|++..+.....++|...........+.+.. +.. .++....+...+..+...+..+.+.-......
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99966 99999988888888898776554333222111 111 11222223334444444455555544444445
Q ss_pred HHHHHHhhcCc------------chhhH---HHHHHHHHHHHHhhccCC--cchhhhhcchhhhhhHHHHhhhHHHHhhh
Q 014330 325 YEVVERRFCDY------------RYCLW---LRWAVVLGVSLVALLVPN--FADFLSLVGSSVCCILGFVLPALFHLIVF 387 (426)
Q Consensus 325 ~~~l~~~~~~~------------~~~~~---~~~~~~~~~~~va~~~p~--~~~i~~~~G~~~~~~~~~ilP~l~~~~~~ 387 (426)
.+.+...-+++ +.+.. ...+...+..++....|+ ++.+.++. .....++|+++++.+++.|
T Consensus 306 sR~~~~~ardg~lP~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 306 GRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLA--TFATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 55554443321 11111 111111111112222332 23333332 2234678999999999888
Q ss_pred cc
Q 014330 388 KQ 389 (426)
Q Consensus 388 ~~ 389 (426)
|+
T Consensus 384 ~~ 385 (457)
T PRK10580 384 RR 385 (457)
T ss_pred HH
Confidence 64
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.63 E-value=1.5e-13 Score=145.07 Aligned_cols=245 Identities=11% Similarity=0.034 Sum_probs=167.4
Q ss_pred CCCCCCChHHHHHHH-HHHhhhhhhch-hhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhCCCcccccc
Q 014330 29 KSKPLSTRSKTFANV-FISIVGAGVLG-LPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRK-LETIHGFSKINSFG 105 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~~~~~~~~y~ 105 (426)
.++++.+.+++++.- +.+++|+|++- +++...++|...+++.+++.++++..|+.-+.+...+ . ++...-.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~------p~aGG~Y 146 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGV------VKGGGAY 146 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCccHHH
Confidence 446788999988888 99999999965 5688889998878899999999999999988887765 2 2223333
Q ss_pred chhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCc
Q 014330 106 DLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
.+.++.+|+..+..+.++.++.....+..|.+..++++..+++..... ...+.......+..++.+++ ......+.+.
T Consensus 147 ~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~-~~~~~~~~~~iia~i~l~ll-~~In~~Gvk~ 224 (953)
T TIGR00930 147 YLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK-IMVDPINDIRIYGTVTVVVL-LGISFAGMEW 224 (953)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccCccccchHHHHHHHHHH-HHHHHhhHHH
Confidence 446788999999999999999888888999999999988887532110 00000111122222222222 2334568888
Q ss_pred cchHHHHHHHHHHHHhheeeeechhhhh-cc------------Cccc-cccc-cchhhhHHHHHHHhhhccceeeccccc
Q 014330 186 LAPLSIFADIVDLGAMGLVMVEDVMISM-KQ------------RPAL-KAFG-DFSVFSYGIGVAVYAFEGVGMILPLES 250 (426)
Q Consensus 186 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~-~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~ 250 (426)
.++++.+.+++.+..++.+++....... .. ..+. ..+. ....+...++++++||.|......+..
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877766644433333221111000 00 0000 0111 122377788888889999999999999
Q ss_pred cCcchhh-HHhHHHHHHHHHHHHHHHHhhhhh
Q 014330 251 ETRNKQR-FGRILGWCMAFISLLYGSFGALGY 281 (426)
Q Consensus 251 ~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy 281 (426)
|+|||+| ++|++..+..+++++|+++.+...
T Consensus 305 ElKnP~r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 305 DLKDPQKAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999965 999999999999999999876433
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.63 E-value=2.3e-13 Score=134.54 Aligned_cols=233 Identities=14% Similarity=0.090 Sum_probs=157.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
+.+|+.|.++.+...++.++|+...+.+..+++.|+..-++..++.++.....+..+.|...+. |+.......+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~------P~~Gg~y~~~ 77 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI------PTAGGGYGFA 77 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCHHHHH
Confidence 4578899999999999999995556678888899987555566666777777777788877774 4445556678
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
++.+||+.+++..+..++.......++....++++..++++.. .+....++..+ +-+...+..|..++
T Consensus 78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~-----------~~~~~~~~~~~-~~~ln~~g~~~~~~ 145 (442)
T TIGR00908 78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP-----------GWLAALVFYIV-FIGINILGVGEAAK 145 (442)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-----------hhHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 9999999999999999988888888888888888888776421 12222221111 12334456666666
Q ss_pred HHHHHHHHHHHHhheeeee-----chhhhhcc-Ccccccc--ccchhhhHHHHHHHhhhccceeeccccccCcchh-hHH
Q 014330 189 LSIFADIVDLGAMGLVMVE-----DVMISMKQ-RPALKAF--GDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ-RFG 259 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~-~~~ 259 (426)
++....+..+..+.++... ...+.... +.+...+ ..+.++..++....|+|.|++......+|+|||+ +.+
T Consensus 146 i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~ip 225 (442)
T TIGR00908 146 LEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIP 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC
Confidence 6655544433322221111 10111111 0011111 1234567788888999999999999999999995 499
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 014330 260 RILGWCMAFISLLYGSFGAL 279 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~~~~ 279 (426)
|++..+..++.++|......
T Consensus 226 rai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 226 RGLIGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988876543
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.63 E-value=1.5e-13 Score=135.43 Aligned_cols=341 Identities=15% Similarity=0.147 Sum_probs=215.8
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhCCCccccccchhHHhh
Q 014330 34 STRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALT-YYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVC 112 (426)
Q Consensus 34 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~ 112 (426)
.|.++++...++.++|+|++..| ...+.|.. .++..++.+.+. ......+.|..++. ++.....+..++.+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~------p~~GG~y~~~~~~~ 72 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAY------PSAGGIYVWVSRAF 72 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTT------TSSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC------CCcCeeeehhhhcc
Confidence 36889999999999999999999 77777776 565566655555 56677777765543 56666667789999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHH
Q 014330 113 GSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIF 192 (426)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~ 192 (426)
||+.+++..+..++.......++.....+.+...+.....++.| ....+.+..++.......++.|...+++..
T Consensus 73 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 73 GPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPW------PQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHH------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cccchhcccceeEEEeeccccccccchhhhhhhccccccccccc------hheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999999999988888888888888887776431111111 112222222222233445667777777766
Q ss_pred HHHHHHH-Hhheeee---ech-hhhhc----cCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHHhHHH
Q 014330 193 ADIVDLG-AMGLVMV---EDV-MISMK----QRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILG 263 (426)
Q Consensus 193 ~~~~~~~-~~~~~~~---~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~ 263 (426)
.....+. .+...+. ... .+..+ ..++..+. .+.....++....|+|.|.+..+...+|+|| |+.+|++.
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-GWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCc-cccchhhHHHHHHhhcccccccccccccccc-hhheeecc
Confidence 6655552 2211111 111 11111 01111122 3445789999999999999999999999999 88999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccccc---ce-------eccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhc
Q 014330 264 WCMAFISLLYGSFGALGYFAFGEETKD---II-------TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFC 333 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~~---~i-------~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~ 333 (426)
.+..++.++|.+.........+++..+ +. .+....++...+..++..+..+.+.........+.+...-+
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 999999999999987777766553221 11 11122246666777777778888887777777777776665
Q ss_pred Ccc------------hhhHHHHHHHHHHHHHh---hccC--CcchhhhhcchhhhhhHHHHhhhHHHHhhhcccCc
Q 014330 334 DYR------------YCLWLRWAVVLGVSLVA---LLVP--NFADFLSLVGSSVCCILGFVLPALFHLIVFKQELG 392 (426)
Q Consensus 334 ~~~------------~~~~~~~~~~~~~~~va---~~~p--~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~~ 392 (426)
++. .+.........++.++. .+.| +++.+.+. +.....+.++++.+.+++.++++++
T Consensus 305 d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (426)
T PF13520_consen 305 DGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKRPD 378 (426)
T ss_dssp TTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHSCS
T ss_pred ccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 321 11111122222222222 1223 35555554 3445567778888888877765443
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.62 E-value=1.8e-13 Score=137.38 Aligned_cols=245 Identities=13% Similarity=0.100 Sum_probs=152.5
Q ss_pred cCCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhhhcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccc
Q 014330 28 TKSKPLSTRSKTFANVFISIVGAGVLGLPYT-FKKTGWIM-GLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFG 105 (426)
Q Consensus 28 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a-~~~~G~~~-g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~ 105 (426)
++.+|+.+.++.++..+++++|+|++..|.. ..++|-.. .++..++.+++....+..+.|..... |+.....
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~------P~sGG~y 111 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI------PKSGGEY 111 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCchh
Confidence 3568899999999999999999999999865 55566431 23455677777778888888887775 3444455
Q ss_pred chhHHhhchhhhHHHHHHHHHHH-hhhhHHHHHHHHhhh-hhhcccCCCcccccccccchhHHHHHHhHHHhhhcccccc
Q 014330 106 DLGYTVCGSVGRVAVDAMIVLAQ-AGFCVSYLIFIANTL-THMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTL 183 (426)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~-~g~~~~y~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 183 (426)
...++.+||+.+++..+..+... .+.+..+....++.+ +.+.++...+ .| ....+...+ +...-.....+.
T Consensus 112 ~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~-~~-----~~~~i~~~~-i~~~~~ln~~Gv 184 (501)
T TIGR00911 112 NYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP-EW-----AIRLVAVLC-VLLLTLVNCLSV 184 (501)
T ss_pred hhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-hH-----HHHHHHHHH-HHHHHHHHHhhh
Confidence 55778999998888876654422 233444445455554 2233321111 01 011111111 122223345677
Q ss_pred CccchHHHHHHHHHHHHhheeeeec---hh--hhhccCc-cc-ccc-ccchhhhHHHHHHHhhhccceeeccccccCcch
Q 014330 184 THLAPLSIFADIVDLGAMGLVMVED---VM--ISMKQRP-AL-KAF-GDFSVFSYGIGVAVYAFEGVGMILPLESETRNK 255 (426)
Q Consensus 184 ~~~~~~s~~~~~~~~~~~~~~~~~~---~~--~~~~~~~-~~-~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 255 (426)
|...+++.+.....+..++.+++.. .. +....++ .. ... ++..++..++....|+|.|.+......+|+|||
T Consensus 185 k~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP 264 (501)
T TIGR00911 185 KWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc
Confidence 7777777666655443322221111 00 0000111 11 111 134567788899999999999999999999999
Q ss_pred hh-HHhHHHHHHHHHHHHHHHHhhhhhhccc
Q 014330 256 QR-FGRILGWCMAFISLLYGSFGALGYFAFG 285 (426)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG 285 (426)
+| .+|++..+..++.++|++..+......+
T Consensus 265 ~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 265 YRTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55 9999999999999999998766554443
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.60 E-value=4.1e-13 Score=132.82 Aligned_cols=239 Identities=12% Similarity=0.029 Sum_probs=152.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHH-hhhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTF-KKTGWI-MGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~-~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+.+|+.+.++.+...++.++|+|++..|... ...|-. ..++..++.+++....+..+.|.....+ +......
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P------~~GG~y~ 78 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYP------ENGADYV 78 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCCcee
Confidence 4678999999999999999999999999764 445643 3566677888888888888888887754 3333334
Q ss_pred hhHHhhchhhhHHHHHHHH-HHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCc
Q 014330 107 LGYTVCGSVGRVAVDAMIV-LAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
..++.+||..+++..+..+ .........+....++++..+.+. +. .....+ .+.....+-....++.+.
T Consensus 79 y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---~~------~~~~~~-~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 79 YLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI---DP------LLGKFI-AAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred eHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ch------HHHHHH-HHHHHHHHHHHHHhhhhH
Confidence 4778899998888887644 333334445666666666554431 10 001111 111112222334567777
Q ss_pred cchHHHHHHHHHHHHhheeeeec---h-hhhhccCccc--cccccchhhhHHHHHHHhhhccceeeccccccCcchhh-H
Q 014330 186 LAPLSIFADIVDLGAMGLVMVED---V-MISMKQRPAL--KAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR-F 258 (426)
Q Consensus 186 ~~~~s~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~-~ 258 (426)
.++++.+..+..+..+++++... . .......... ...+++.++..++....|+|.|.+......+|+||||| +
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~i 228 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTM 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccc
Confidence 77777666554433221111110 0 1111111110 11113456777888899999999999999999999965 8
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhc
Q 014330 259 GRILGWCMAFISLLYGSFGALGYFA 283 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~~~~gy~~ 283 (426)
+|++..+..++.++|.+........
T Consensus 229 P~Ai~~~~~i~~~~Y~l~~~~~~~~ 253 (445)
T PRK11357 229 PRALIGSCLLVLVLYTLLALVISGL 253 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999877654433
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.60 E-value=4.2e-13 Score=132.49 Aligned_cols=324 Identities=10% Similarity=0.056 Sum_probs=198.0
Q ss_pred HHHHhhhhhhchhhH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHHHH
Q 014330 43 VFISIVGAGVLGLPY-TFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVD 121 (426)
Q Consensus 43 l~~~~iG~GiL~LP~-a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~ 121 (426)
.++++||+|++..|. +++++|. ..++..++.+++....+..+.|...+. |+.....+.+++.+||+.++...
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~------P~~Gg~y~y~~~~~G~~~gf~~g 75 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT------PDTGSFSTYADKAIGRWAGYTIG 75 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCCHHHHHHHHcChHHHHHHH
Confidence 357899999999985 7888886 488889999999999888888887774 55567777889999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHHHHHh
Q 014330 122 AMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAM 201 (426)
Q Consensus 122 ~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~~~~~ 201 (426)
+.+++.............+..++.+.++ .+...+..++..+. -+....+.|..+.++.......+...
T Consensus 76 w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~-~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 76 WLYWWFWVLVIPLEANIAAMILHSWVPG-----------IPIWLFSLVITLAL-TGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-----------CcHHHHHHHHHHHH-HHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9999877666666665555555554332 11222222222222 12234455555555554443332222
Q ss_pred heee------eechhh-hh-----ccCc--cccccccchhhhHHHHHHHhhhccceeeccccccCcchhh-HHhHHHHHH
Q 014330 202 GLVM------VEDVMI-SM-----KQRP--ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCM 266 (426)
Q Consensus 202 ~~~~------~~~~~~-~~-----~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~-~~~~~~~~~ 266 (426)
..++ ...... .. +.++ +..+ +.+.++..++....|+|.|.+.+....+|+||||| .+|++..+.
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p-~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~ 222 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMP-NGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVI 222 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCc-ccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 1111 111000 00 0000 1111 14557889999999999999999999999999966 999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccccc--------ceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcc--
Q 014330 267 AFISLLYGSFGALGYFAFGEETKD--------IITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR-- 336 (426)
Q Consensus 267 ~~~~~~Y~~~~~~gy~~fG~~~~~--------~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~-- 336 (426)
..+.++|++..+........+..+ ....+....+...+.+.+..+..+.+..-..+...+.+...-+++.
T Consensus 223 ~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP 302 (446)
T PRK10197 223 WRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP 302 (446)
T ss_pred HHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 999999998766644433322111 0112222233445566666666666766666777777665554321
Q ss_pred ----------hhhH---HHHHHHHHHHHHhhccC--CcchhhhhcchhhhhhHHHHhhhHHHHhhhc
Q 014330 337 ----------YCLW---LRWAVVLGVSLVALLVP--NFADFLSLVGSSVCCILGFVLPALFHLIVFK 388 (426)
Q Consensus 337 ----------~~~~---~~~~~~~~~~~va~~~p--~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~ 388 (426)
.+.. ...++..+..+.....| .++.++++.+... .+.|.++++.+++.||
T Consensus 303 ~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 303 AVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 1111 11111111122222222 3666777654433 5888889999998886
No 43
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.59 E-value=1.5e-13 Score=129.75 Aligned_cols=286 Identities=13% Similarity=0.120 Sum_probs=213.1
Q ss_pred CCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhh
Q 014330 33 LSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVC 112 (426)
Q Consensus 33 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~ 112 (426)
|.|..|....+..+++|+|++.+|...++.+ -.|++..++.+.......+++.+..++ .+..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~-------~p~~~l~~~~~~~~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKR-------FPGKTLVEISEKLF 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCCHHHHHHHHh
Confidence 5789999999999999999999999877765 266677777777777777777777776 34578999999999
Q ss_pred chhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHH
Q 014330 113 GSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIF 192 (426)
Q Consensus 113 G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~ 192 (426)
||+.+++..+...++.+......+...++.++...-.. .+.+.... +..+.......++++.+++.+.+
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~----------TP~~~i~~-~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPE----------TPIWVIIL-LFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------CCHHHHHH-HHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999988888888888888887765321 22333333 33333345667899999987766
Q ss_pred HHHHHHHHhheeeeechhhh-hccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHHhHHHHHHHHHHH
Q 014330 193 ADIVDLGAMGLVMVEDVMIS-MKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISL 271 (426)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~ 271 (426)
.....+.....+......+. ..+-.+.... ++.++.++.....+.|.+......+.+.+|+|||.+|....+..++.+
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~-g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~ 220 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLLPVLES-GIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGL 220 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHeeCcccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 66555554444433332221 1122223322 777889998888899999988888999999999999999999999999
Q ss_pred HHHHHhhhhhhcccccccccee-------c--cccC--ChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcchh
Q 014330 272 LYGSFGALGYFAFGEETKDIIT-------T--NFGA--GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYC 338 (426)
Q Consensus 272 ~Y~~~~~~gy~~fG~~~~~~i~-------~--~~~~--~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~~ 338 (426)
+|....+.....||.+..++.. . ++++ +....+.-..+....+....+..+.+.+.+.+.++.++++
T Consensus 221 ~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 298 (320)
T PF03845_consen 221 FLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDYK 298 (320)
T ss_pred HHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999976544321 1 1121 2344555667788888889999999999999999877766
No 44
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.56 E-value=5.6e-12 Score=121.18 Aligned_cols=340 Identities=14% Similarity=0.090 Sum_probs=234.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
.+|+...+.-.+.-++..||+|. ++...+++++|....++..++.+...+..+.-+.|.+..+ |...+|.+.+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~------P~sGsF~~ya 115 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY------PVSGSFSTYA 115 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCchhhhh
Confidence 56888888999999999999998 6788999999999889999999999999999999998885 5556788899
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHH--HhHHHhhhccccccCcc
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWG--CFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pl~~~~~l~~~ 186 (426)
.+.-.+-.++...+.+++....++...++..+..++.|.++.- +.+.|..+ ++++.+-+...|...+.
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v----------~~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV----------PPWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC----------ChHHHHHHHHHHHHHHHHhccccccee
Confidence 9999999999999999999999999999999999999987531 22333333 33344444455666666
Q ss_pred chHHHHHHHHHHHHh---heeeeechhhhh-----c--cCccccccccchhhhHHHHHHHhhhccceeeccccccCcchh
Q 014330 187 APLSIFADIVDLGAM---GLVMVEDVMISM-----K--QRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQ 256 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~---~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 256 (426)
.++....-+..++.+ .+++..+..... . .+|.... ++++++...+-...|||+|.+.+--...|-+||+
T Consensus 186 Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~-~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~ 264 (541)
T COG0833 186 EFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFA-GGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR 264 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCC-cchHHHHHHHhhheeeeeceeeeeeeecccCCch
Confidence 655544333333222 222222211110 1 1122222 2567788888888999999999999999999997
Q ss_pred h-HHhHHHHHHHHHHHHHHHHhhhhhhc--ccccc----------ccce---eccccCChhhHHHHHHHHHHHHhhcccc
Q 014330 257 R-FGRILGWCMAFISLLYGSFGALGYFA--FGEET----------KDII---TTNFGAGLVSTLVNVGLCVNLFLTFPLM 320 (426)
Q Consensus 257 ~-~~~~~~~~~~~~~~~Y~~~~~~gy~~--fG~~~----------~~~i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~ 320 (426)
| ++|++.-.+.-..++|++.-++--+. |.|.. .++. .+|.+-.....+.|...+++++.+---.
T Consensus 265 K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~ 344 (541)
T COG0833 265 KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSG 344 (541)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhcc
Confidence 7 99999999999999998654433222 32210 0111 1222223566788999999999999999
Q ss_pred ccchHHHHHHhhcCcchh---------------hHHHHHHHHHHHHHhhccC--CcchhhhhcchhhhhhHHHHhhhHHH
Q 014330 321 MNPVYEVVERRFCDYRYC---------------LWLRWAVVLGVSLVALLVP--NFADFLSLVGSSVCCILGFVLPALFH 383 (426)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~va~~~p--~~~~i~~~~G~~~~~~~~~ilP~l~~ 383 (426)
++...+.+..+-++++-+ ...+.++-+++++-+..-. -++-++++.|... +++.+-=++.|
T Consensus 345 lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~sh 422 (541)
T COG0833 345 LYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSH 422 (541)
T ss_pred chHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 999999999888653211 1123333333344333322 1555666655332 45555557778
Q ss_pred Hhhhc
Q 014330 384 LIVFK 388 (426)
Q Consensus 384 ~~~~~ 388 (426)
++.||
T Consensus 423 irFR~ 427 (541)
T COG0833 423 IRFRR 427 (541)
T ss_pred HHHHH
Confidence 87776
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.48 E-value=2.1e-11 Score=121.60 Aligned_cols=348 Identities=14% Similarity=0.081 Sum_probs=212.7
Q ss_pred CCCCCCChHH-HHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSK-TFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+.+++.+.++ ......+.++|.|++.+|......+ ....+..++.+.+....+..+.|..++ +|+...+.+.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~------~p~~GG~y~~ 81 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA------IPSAGGAYAY 81 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCeeee
Confidence 4567788888 8888999999999999998887765 222333455555555656666666664 3566677788
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
.++.+||+.+++..+..++.......+......+.+..+++..... .... -......+.....+-+...++.+...
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~ln~~G~~~~~ 157 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL---SIGP-LLIILIALALIALLTLLNLRGIKASA 157 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh---cCCc-hHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999888888888888888777742200 0000 01122222223333344567777777
Q ss_pred hHHHHHHHHHHHHhheeeeechhhhh----ccCcccc-ccccchhhhHHHHHHHhhhccceeeccccccCcch-hhHHhH
Q 014330 188 PLSIFADIVDLGAMGLVMVEDVMISM----KQRPALK-AFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK-QRFGRI 261 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~~~~~ 261 (426)
+++.+..+..+...++..+....... ....... ..+....+..++....++|.|.+...+..+|+||| |+.+|+
T Consensus 158 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~a 237 (466)
T COG0531 158 KINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRA 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHH
Confidence 77766666555544433322211111 0111111 11134467888888999999999999999999998 558999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccc-cccc-----ee---ccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhh
Q 014330 262 LGWCMAFISLLYGSFGALGYFAFGEE-TKDI-----IT---TNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRF 332 (426)
Q Consensus 262 ~~~~~~~~~~~Y~~~~~~gy~~fG~~-~~~~-----i~---~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~ 332 (426)
+..+...+.++|.+.........+++ .... .. ......+...+..+...+..+.+.........+.+...-
T Consensus 238 ii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~a 317 (466)
T COG0531 238 IILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMA 317 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988877777652 2211 10 011112344555555556666665444444444443333
Q ss_pred cCc-----------c--hhhHHHHHHHHHHHHHhhcc----CCcchhhhhcchhhhhhHHHHhhhHHHHhhhcc
Q 014330 333 CDY-----------R--YCLWLRWAVVLGVSLVALLV----PNFADFLSLVGSSVCCILGFVLPALFHLIVFKQ 389 (426)
Q Consensus 333 ~~~-----------~--~~~~~~~~~~~~~~~va~~~----p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~ 389 (426)
+++ + .+.............+.... ..++.+.++ +.....+.|.++.+..++.+|+
T Consensus 318 rdg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 318 RDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred hCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 321 1 11111111111111122221 224555555 4455678999999999888875
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=2.1e-12 Score=128.03 Aligned_cols=346 Identities=14% Similarity=0.073 Sum_probs=243.5
Q ss_pred cCCCCCCChHHHHHHHHHHhhhhhhch-hhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCc-ccccc
Q 014330 28 TKSKPLSTRSKTFANVFISIVGAGVLG-LPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSK-INSFG 105 (426)
Q Consensus 28 ~~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~-~~~y~ 105 (426)
++.+|+.+.+.-.+.-++.+||+|++- ...+.++.|-..-++..++.+...+.++..+.|...++ |. ..++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~------P~~aGs~~ 99 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRF------PVSAGSFY 99 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheec------ccccccce
Confidence 366889999999999999999999965 56888888888778889999999999999999988885 44 35666
Q ss_pred chhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhc---------ccCCCcccccccccchhHHHHHHhHHHhh
Q 014330 106 DLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI---------NNSTTSQTILGFLSPKALYIWGCFPFQLG 176 (426)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 176 (426)
..+++..|+...+.+.+.+++..+..+.+.+...+.+++.+. ++.... .| -...+.+++.+.++.
T Consensus 100 ~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~-~~-----~~~fla~~v~in~~g 173 (554)
T KOG1286|consen 100 TYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPG-GW-----IPDFLAFILIINLFG 173 (554)
T ss_pred eeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCC-cc-----HHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999987 111111 11 112333334444444
Q ss_pred hccccccCccchHHHHHHHHHHHHhheeeeechhhhh-cc------Cc---cccccccchhhhHHHHHHHhhhccceeec
Q 014330 177 LNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISM-KQ------RP---ALKAFGDFSVFSYGIGVAVYAFEGVGMIL 246 (426)
Q Consensus 177 l~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~------~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~ 246 (426)
....-+.++...+..+.++..+....+++..+..... .+ +. ...++ .++++..++....|+|.|.+.+-
T Consensus 174 v~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~-gf~Gv~s~~~~~~fsf~G~e~va 252 (554)
T KOG1286|consen 174 VLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPF-GFKGVLSGAATAFFSFIGFELVA 252 (554)
T ss_pred HhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCC-CcceeeHHHHHHHHHHhhHHHHH
Confidence 4555677777777777766666666666654432211 01 11 12222 47889999999999999999999
Q ss_pred cccccCcchhh-HHhHHHHHHHHHHHHHHHHhhhhhhcccc-c--cccceec------cccCChhhH---HHHHHHHHHH
Q 014330 247 PLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGE-E--TKDIITT------NFGAGLVST---LVNVGLCVNL 313 (426)
Q Consensus 247 ~i~~~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~-~--~~~~i~~------~~~~~~~~~---~~~i~~~~~~ 313 (426)
...+|-||||| .++++..++..+.++|.+..+.--+.-.. + ..++... ..++.+.+. +.+...++.+
T Consensus 253 ~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~ 332 (554)
T KOG1286|consen 253 TTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL 332 (554)
T ss_pred HHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence 99999999966 99999999999999999988765554321 2 2221111 122334555 8899999999
Q ss_pred HhhccccccchHHHHHHhhcCcc-----------hhhH-HHHHHHHHHHHHhhccCC-----cchhhhhcchhhhhhHHH
Q 014330 314 FLTFPLMMNPVYEVVERRFCDYR-----------YCLW-LRWAVVLGVSLVALLVPN-----FADFLSLVGSSVCCILGF 376 (426)
Q Consensus 314 ~~s~pl~~~~~~~~l~~~~~~~~-----------~~~~-~~~~~~~~~~~va~~~p~-----~~~i~~~~G~~~~~~~~~ 376 (426)
+++--...++..+.+....+++. .+.+ ...+..++..+.++..+. ++.++++.| .++.+.+
T Consensus 333 ~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w 410 (554)
T KOG1286|consen 333 LSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSS--IGTLFAW 410 (554)
T ss_pred HHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHh--HHHHHHH
Confidence 99999999999999988775321 1122 222233333444443332 477777754 3445667
Q ss_pred HhhhHHHHhhhc
Q 014330 377 VLPALFHLIVFK 388 (426)
Q Consensus 377 ilP~l~~~~~~~ 388 (426)
.+=++.+++.|+
T Consensus 411 ~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 411 TLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHeeeee
Confidence 666777887776
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.35 E-value=9.1e-10 Score=109.86 Aligned_cols=250 Identities=12% Similarity=0.032 Sum_probs=148.5
Q ss_pred CCCCCCChHHHHHHHHHHh-hhhhhchhh-HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFANVFISI-VGAGVLGLP-YTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~-iG~GiL~LP-~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+.+|+.|.++.+..-++.+ +|.|+.+++ .+..+.|- ..+...++.++.....+..+.|...+. |+......
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~------P~aGG~Y~ 82 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARY------PISGAIYQ 82 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCCCHHH
Confidence 5678899999999998885 999998887 55666666 456777777888888888888877774 44455556
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc---CCCccccc-ccccchhHHHHHHhHHHhhhccccc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINN---STTSQTIL-GFLSPKALYIWGCFPFQLGLNSIPT 182 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~ 182 (426)
..++.+||+.+++..+..++.......+........+..+.+. ...+..+. +........+....+...-+.....
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 6888999999999998888776554444444444444433221 01010110 0000011122212222222334456
Q ss_pred cCccchHHHHHHHHHHHHhheeeeech---hhhhc--cCcccccc-cc-chhhhHHHHHHHhhhccceeeccccccCcch
Q 014330 183 LTHLAPLSIFADIVDLGAMGLVMVEDV---MISMK--QRPALKAF-GD-FSVFSYGIGVAVYAFEGVGMILPLESETRNK 255 (426)
Q Consensus 183 l~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~-~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 255 (426)
.|..++++.+..+..+..+.+++.... .+... ........ ++ ...+..+.....|+|.|.+......+|+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 667777765555433322222211111 10000 00000000 01 1234455666789999999999999999999
Q ss_pred hh-HHhHHHHHHHHHHHHHHHHhhhhhhccc
Q 014330 256 QR-FGRILGWCMAFISLLYGSFGALGYFAFG 285 (426)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG 285 (426)
+| .+|++..+..+..++|.+.-+......+
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 65 9999999999988777665555444333
No 48
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.34 E-value=8.2e-10 Score=110.53 Aligned_cols=243 Identities=10% Similarity=-0.019 Sum_probs=134.6
Q ss_pred CCCCCCChHHHHHHHHHHhhh--hhhch-hhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVG--AGVLG-LPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFG 105 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG--~GiL~-LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~ 105 (426)
+.+|+.+.++.+...++. +| .|+.. ++.++++.|....++..++.+++....+..+.|...+. |+.....
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~------P~~Gg~y 81 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY------PTSGGQY 81 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC------CCCccHH
Confidence 456889999988888774 44 66644 45677778876567778888888888888888888774 4445555
Q ss_pred chhHHhhch----hhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcccc
Q 014330 106 DLGYTVCGS----VGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIP 181 (426)
Q Consensus 106 ~l~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 181 (426)
..+++++|+ ...++..+..++.....+.+.....++.+........+.+.|.+.... ...+.+.....+-.....
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~in~~ 160 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWH-IFGIMIGIHLIHALINSL 160 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCch-hhhhHHHHHHHHHHHHHh
Confidence 556777764 456666666666655555555555555655443211111001100001 111111111111222334
Q ss_pred ccCccchHHHHHHHHHHHHhh---ee-eeechhh---h---hcc-Ccccccc-ccchhhhHHHHHHHhhhccceeecccc
Q 014330 182 TLTHLAPLSIFADIVDLGAMG---LV-MVEDVMI---S---MKQ-RPALKAF-GDFSVFSYGIGVAVYAFEGVGMILPLE 249 (426)
Q Consensus 182 ~l~~~~~~s~~~~~~~~~~~~---~~-~~~~~~~---~---~~~-~~~~~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~ 249 (426)
..|..++++....+..+.... ++ +...... . ..+ .++...+ ++...+..++....|+|.|.+......
T Consensus 161 g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a 240 (482)
T TIGR00907 161 PTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMA 240 (482)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHH
Confidence 555555555443333222211 11 1111000 0 000 0000011 011134455556779999999999999
Q ss_pred ccCcchhh-HHhHHHHHHHHHHHHHHHHhhh
Q 014330 250 SETRNKQR-FGRILGWCMAFISLLYGSFGAL 279 (426)
Q Consensus 250 ~~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~ 279 (426)
+|+||||| ++|++..+..+..++|.+..+.
T Consensus 241 ~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 241 EEIENPEVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred HhcCChhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999865 9999999988877655444333
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.26 E-value=5e-09 Score=105.12 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=133.8
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhCCCc-cccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALT-YYCMMLLVHTRRKLETIHGFSK-INSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~-~~~y~~ 106 (426)
+.+++.|.++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ......+.|..... |+ ...-..
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~------P~~aGG~Y~ 74 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAF------KDEKGGIYS 74 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCcHHH
Confidence 44678999999999999999976 679888888875 455555545443 33555566666653 33 344455
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHh-hhhhhcccCCCccccc--ccccchhH-HHHHHhHHHhhhccccc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIAN-TLTHMINNSTTSQTIL--GFLSPKAL-YIWGCFPFQLGLNSIPT 182 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~-~l~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~pl~~~~~ 182 (426)
..++.+|++.+++..+..+................ .....+.... .+.|. +....... ...+..+..+-....+.
T Consensus 75 w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g 153 (496)
T PRK15238 75 WMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDT-TQTWHFLGLNSTQVVGILAVIWMILVTFVASKG 153 (496)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hhhhhhhcccchHHHHHHHHHHHHHHHHHHccc
Confidence 68899999988876655444333222111111000 0111111110 00010 00011111 11112212223345677
Q ss_pred cCccchHHHHHHHHHHHH----h---heee-eec--hhhhhc--cC-cc-ccccccchhhhHHHHHHHhhhccceeeccc
Q 014330 183 LTHLAPLSIFADIVDLGA----M---GLVM-VED--VMISMK--QR-PA-LKAFGDFSVFSYGIGVAVYAFEGVGMILPL 248 (426)
Q Consensus 183 l~~~~~~s~~~~~~~~~~----~---~~~~-~~~--~~~~~~--~~-~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 248 (426)
++..++++.+.....+.. + .+.. ... ..+... +. +. ...+.+..++..++....|+|.|.+.....
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 233 (496)
T PRK15238 154 INKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGL 233 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 888877775543222111 1 1111 111 000000 00 00 011111234666777789999999999999
Q ss_pred cccCcchhh-HHhHHHHHHHHHHHHHHHHhhhhhh
Q 014330 249 ESETRNKQR-FGRILGWCMAFISLLYGSFGALGYF 282 (426)
Q Consensus 249 ~~~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~ 282 (426)
.+|+||||| .+|++..+...+.++|.+..+....
T Consensus 234 a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~ 268 (496)
T PRK15238 234 VDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGV 268 (496)
T ss_pred HHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999865 9999999999999999987554433
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.26 E-value=1.3e-10 Score=96.86 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=151.7
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------h-------
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLET---------I------- 95 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~---------~------- 95 (426)
..+|...+...+.|-++|+|-|+||.+|+.+||..++.++.+.++.++.+..+..|+....+. .
T Consensus 10 elysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd 89 (319)
T KOG3832|consen 10 ELYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDD 89 (319)
T ss_pred chhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccc
Confidence 346667788899999999999999999999999999999999999999999988887544321 0
Q ss_pred ----------------------------------hCCCccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHh
Q 014330 96 ----------------------------------HGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIAN 141 (426)
Q Consensus 96 ----------------------------------~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~ 141 (426)
.+.+++.+.+|++...|.|.+..+..++++++++|.+..|...+-.
T Consensus 90 ~stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpf 169 (319)
T KOG3832|consen 90 ESTASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPF 169 (319)
T ss_pred ccccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCch
Confidence 0011223456778888999999999999999999999999988877
Q ss_pred hhhhhccc---------------CCCcccccccccch----hHHHHHHhHHHhhhccccccCccchHHHHHHHHHHHHhh
Q 014330 142 TLTHMINN---------------STTSQTILGFLSPK----ALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMG 202 (426)
Q Consensus 142 ~l~~~~~~---------------~~~~~~~~~~~~~~----~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~~~~~~ 202 (426)
...++... .+...+|++..... ..+.+..+++.+|+.. -+++.-..++.+....-.....
T Consensus 170 s~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~ 248 (319)
T KOG3832|consen 170 SAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFI 248 (319)
T ss_pred HhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhcc
Confidence 76665531 11224465422222 1222234444556553 4666667777776665554333
Q ss_pred eeeeec-hhhhhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhh
Q 014330 203 LVMVED-VMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR 257 (426)
Q Consensus 203 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~ 257 (426)
....-. .....+..+..++.....++.+.++..+|+|.+|.+.|.....++.+..
T Consensus 249 ~g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~g 304 (319)
T KOG3832|consen 249 LGISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKDG 304 (319)
T ss_pred chhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeeccc
Confidence 222111 1111111222222224556777889999999999999998888877543
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.26 E-value=4.2e-11 Score=119.65 Aligned_cols=274 Identities=14% Similarity=0.079 Sum_probs=173.1
Q ss_pred HHHHhhhhhhch-hhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHHHH
Q 014330 43 VFISIVGAGVLG-LPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVD 121 (426)
Q Consensus 43 l~~~~iG~GiL~-LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~ 121 (426)
.+..++|.|++. .+.+..+.|....++..++.+++...++.-+.|..++. ++...+.+..++.+|++.+....
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~------p~~Gg~y~y~~~~lg~~~Gf~~g 79 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF------PSAGGFYAYASRGLGPALGFAAG 79 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh------ccccchhhhhhhccCCcCCceee
Confidence 467889999854 67889999997788889999999999999999988885 45567778889999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhhh--cccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHHHH
Q 014330 122 AMIVLAQAGFCVSYLIFIANTLTHM--INNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLG 199 (426)
Q Consensus 122 ~~~~~~~~g~~~~y~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~~~ 199 (426)
+.+++.............+..++.+ .++......|. . .+..+...++. .......|..+..+.......+.
T Consensus 80 w~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~-~l~~~gv~~~~~~~~~~~~i~~~ 152 (478)
T PF00324_consen 80 WAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWG----I--LIAIIFILLIT-LLNLFGVRVSGKIEFILTIIKLI 152 (478)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccccccccccccc----c--hhhhhhhhhhh-hhhhhhhhccchHHHHHHHHhhh
Confidence 9988888888777777777777666 33322111110 0 11122111111 22234555555544333332222
Q ss_pred Hhheeeeec-----hh-hhhcc-----Cc---cccc-------cccchhhhHHHHHHHhhhccceeeccccccCcchhh-
Q 014330 200 AMGLVMVED-----VM-ISMKQ-----RP---ALKA-------FGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR- 257 (426)
Q Consensus 200 ~~~~~~~~~-----~~-~~~~~-----~~---~~~~-------~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~- 257 (426)
.....++.. .. ++.+. +. +..+ ..++.++..++...+++|.|.+......+|.|||||
T Consensus 153 ~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~ 232 (478)
T PF00324_consen 153 ALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKT 232 (478)
T ss_pred HhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhh
Confidence 221111111 11 01000 00 0011 114678999999999999999999999999999966
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhcccccccccee------------ccccCChhhHHHHHHHHHHHHhhccccccchH
Q 014330 258 FGRILGWCMAFISLLYGSFGALGYFAFGEETKDIIT------------TNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVY 325 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~------------~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~ 325 (426)
++|++..+.....++|.+.....-...+.+..+... ......+...+.++....+.+.+.--..+...
T Consensus 233 IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~s 312 (478)
T PF00324_consen 233 IPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAAS 312 (478)
T ss_pred hhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccc
Confidence 999999999999999998888777766654432211 11122344455555555555555444444444
Q ss_pred HHHH
Q 014330 326 EVVE 329 (426)
Q Consensus 326 ~~l~ 329 (426)
+.+.
T Consensus 313 R~l~ 316 (478)
T PF00324_consen 313 RLLY 316 (478)
T ss_pred eeeh
Confidence 4443
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.25 E-value=7.3e-09 Score=103.39 Aligned_cols=240 Identities=10% Similarity=0.057 Sum_probs=124.3
Q ss_pred CCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhCCCccccccchhHHh
Q 014330 33 LSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTY-YCMMLLVHTRRKLETIHGFSKINSFGDLGYTV 111 (426)
Q Consensus 33 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~ 111 (426)
|.+.+.-+...+.+++ ++-.+|.+ ++.|.. .++..++.+++.. -.+....|..... |+.....+..++.
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~------P~~GG~y~~~~~a 71 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAW------PEKGGVFRWVGEA 71 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccC------CCCCCceeeHhhh
Confidence 3555555554444444 44555755 578864 4444555444433 3555666666553 4555666778999
Q ss_pred hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHH--HhHHHhhhccccccCccchH
Q 014330 112 CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWG--CFPFQLGLNSIPTLTHLAPL 189 (426)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pl~~~~~l~~~~~~ 189 (426)
+|++.++...+.+++.......+-+......+..+.+.....+. ...+++....+ .....+-....++.|..+++
T Consensus 72 ~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i 148 (474)
T TIGR03813 72 FGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDES---LAGNKLYVLVSVLFVYWLATFIALRGVAAFTKV 148 (474)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcc---cccccHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 99999999998888865432222222222222222111100000 00112221111 11112223456677777666
Q ss_pred HHHHHHHH-H------HHhheeee-echhhhhc-cCcc-ccccccchhhhHHHHHHHhhhccceeeccccccCcchhh-H
Q 014330 190 SIFADIVD-L------GAMGLVMV-EDVMISMK-QRPA-LKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR-F 258 (426)
Q Consensus 190 s~~~~~~~-~------~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~-~ 258 (426)
+....... + ........ .......+ .+.+ .....++..+..+. .+.|+|.|.+......+|+||||| .
T Consensus 149 ~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~i 227 (474)
T TIGR03813 149 AKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccch
Confidence 64432211 1 11111100 00000000 0001 11111233333333 457899999999999999999855 9
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 014330 259 GRILGWCMAFISLLYGSFGALGYFAFGE 286 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~~~~gy~~fG~ 286 (426)
+|++..+..++.++|++..+......++
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 9999999999999999877665544443
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.21 E-value=8.2e-09 Score=103.47 Aligned_cols=229 Identities=13% Similarity=0.005 Sum_probs=124.3
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 31 KPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALT--YYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~--~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
++|.|.++-++..+.++. ++-.+| .+++.|+- .+...+.+.+. .-.+....|.....+ ++.......+
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~--~i~~~i~~~l~~~lp~al~~AELas~~p-----~~~GG~y~wv 72 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGFH--LVFFLLLGGILWFIPVALCAAEMATVDG-----WEEGGIFAWV 72 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccC-----CCCCCeeeeh
Confidence 566888888877777775 557888 57788854 33333334443 335666666655431 0234555668
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcc--cCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN--NSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
++++|++.+++..+..++.......+........+..... ....+ .| ......+.....+.+...+..|..
T Consensus 73 ~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~------~~~i~~l~i~~~~t~~n~~G~k~~ 145 (507)
T TIGR00910 73 SNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNED-PI------IKFIAALIIFWALAFSQFGGTKRT 145 (507)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccC-cH------HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8999999999887777776553333322222222222221 11111 00 011111122222234456677777
Q ss_pred chHHHHHHHHHHHH-hh--ee-eeechhhhh----ccC-ccccccccch--hhhHHHHHHHhhhccceeeccccccCcch
Q 014330 187 APLSIFADIVDLGA-MG--LV-MVEDVMISM----KQR-PALKAFGDFS--VFSYGIGVAVYAFEGVGMILPLESETRNK 255 (426)
Q Consensus 187 ~~~s~~~~~~~~~~-~~--~~-~~~~~~~~~----~~~-~~~~~~~~~~--~~~~~~~~~~faf~~~~~~~~i~~~m~~~ 255 (426)
.+++.++.+..+.. .+ +. ......... +.. .+..+ ++. .....+....|+|.|.+......+|+|||
T Consensus 146 ~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP 223 (507)
T TIGR00910 146 AKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFP--DFSKVGTLVVFVAFIGAYMGVEASASHINELENP 223 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCC--CcccccHHHHHHHHHHHHhcHHHHHHHHHHccCC
Confidence 77665543311111 11 10 000001000 000 11111 221 22334445688999999999999999999
Q ss_pred hh-HHhHHHHHHHHHHHHHHHHhh
Q 014330 256 QR-FGRILGWCMAFISLLYGSFGA 278 (426)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~Y~~~~~ 278 (426)
+| ++|++..+.+++.++|.+.++
T Consensus 224 ~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 224 GRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 65 999999999999999986554
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.90 E-value=5.6e-07 Score=81.55 Aligned_cols=226 Identities=14% Similarity=0.087 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhhhhhch---hhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhch
Q 014330 38 KTFANVFISIVGAGVLG---LPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGS 114 (426)
Q Consensus 38 ~~~~~l~~~~iG~GiL~---LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 114 (426)
+-.+..+.+++|+|.=+ .=.-|.+-|+. |...+++++.+-..++....+..++. +..+|.|.-++.+|+
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-------~a~~y~~~~~~v~~~ 78 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-------NATSYREILKYVSGP 78 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHhhH
Confidence 34456678999999543 22345566777 67777777877778888887877774 668999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHH
Q 014330 115 VGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFAD 194 (426)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~ 194 (426)
+..++.+....+++++.++.-+.-.++.+++.++- +.+.=..+...++..+-..++.+.+..+..+.+
T Consensus 79 ~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l------------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~ 146 (349)
T COG3949 79 KFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL------------PYWIGALIIILLVLILLFLGRVEGIITVNGIIT 146 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc------------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHH
Confidence 99999999999999999999888888888887752 222221111111112223454665555544433
Q ss_pred HHHHHHhheee-eechhh-hhccCccccccccchhhhHHHHHHHhhh-ccceeeccccccCcchhhHHhHHHHHHHHHHH
Q 014330 195 IVDLGAMGLVM-VEDVMI-SMKQRPALKAFGDFSVFSYGIGVAVYAF-EGVGMILPLESETRNKQRFGRILGWCMAFISL 271 (426)
Q Consensus 195 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~ 271 (426)
-..+.....+. .....+ +...+.+...-++|.. .+.+=..+.. .+...+.++-+||+++|...+....+-.+.++
T Consensus 147 P~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgv 224 (349)
T COG3949 147 PFLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGV 224 (349)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHH
Confidence 33332221111 111111 1111111111114432 1221111111 13444556779999998877776666666665
Q ss_pred HHHHHhhhhhhccc
Q 014330 272 LYGSFGALGYFAFG 285 (426)
Q Consensus 272 ~Y~~~~~~gy~~fG 285 (426)
+-.+....-...++
T Consensus 225 l~~l~nlsLi~~~~ 238 (349)
T COG3949 225 LLFLINLSLIALYD 238 (349)
T ss_pred HHHHHHHHHHhhcc
Confidence 55554443333343
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.72 E-value=1.4e-06 Score=84.28 Aligned_cols=253 Identities=13% Similarity=0.057 Sum_probs=124.6
Q ss_pred CCCCCCChHHHHHHHH---HHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccc-
Q 014330 29 KSKPLSTRSKTFANVF---ISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSF- 104 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~---~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y- 104 (426)
+.+|+.|.++.+..-. +..-|.- -++.+.+...|-..-.-..++.+.+....+.-|.|.+..+|+ ++..-|
T Consensus 45 ef~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt----sGgLy~w 119 (550)
T KOG1289|consen 45 ELKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT----SGGLYFW 119 (550)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC----CCcHHHH
Confidence 4577777665543332 2222221 345666666676666666788888888888888888888642 221111
Q ss_pred -cchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcccccc
Q 014330 105 -GDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTL 183 (426)
Q Consensus 105 -~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 183 (426)
.+++-.-+|+...+++.....+.......+-.-..++.+.....-. + ..+.+... +.+.+.....++..+......
T Consensus 120 aa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~-n-p~y~~~~~-~~~~v~~ai~~v~~lln~~p~ 196 (550)
T KOG1289|consen 120 AAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT-N-PNYEPTNY-HQFGVFEAILFVHGLLNSLPT 196 (550)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc-C-CCCcccce-EeehHHHHHHHHHHHHhcCCc
Confidence 1222222334444444444333333222222222222222222211 1 11111111 111111111111112222233
Q ss_pred CccchHHHHHHHHHHHHhheeee----echhh-hhcc----Cccccccccch----hhhHHHHHHHhhhccceeeccccc
Q 014330 184 THLAPLSIFADIVDLGAMGLVMV----EDVMI-SMKQ----RPALKAFGDFS----VFSYGIGVAVYAFEGVGMILPLES 250 (426)
Q Consensus 184 ~~~~~~s~~~~~~~~~~~~~~~~----~~~~~-~~~~----~~~~~~~~~~~----~~~~~~~~~~faf~~~~~~~~i~~ 250 (426)
|.+++++.+++...++.+++..+ ..... ++.. ..+..+..+|+ .+..++-.-.+++.|.+..+++.+
T Consensus 197 r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aE 276 (550)
T KOG1289|consen 197 RVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAE 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHH
Confidence 44445554444443333322222 11111 1111 11111122333 355556667888999999999999
Q ss_pred cCcchh-hHHhHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 014330 251 ETRNKQ-RFGRILGWCMAFISLLYGSFGALGYFAFGEETK 289 (426)
Q Consensus 251 ~m~~~~-~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~ 289 (426)
|.||++ +.+|++..+..+..++=..+-+.-.+.-+++.+
T Consensus 277 E~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 277 ETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred HhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 999985 489999999999888877666666666665443
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.58 E-value=3.2e-05 Score=74.45 Aligned_cols=249 Identities=11% Similarity=-0.053 Sum_probs=143.8
Q ss_pred chhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhc--ccccc
Q 014330 106 DLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLN--SIPTL 183 (426)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~--~~~~l 183 (426)
.++|..||.++.++..+++.+.+.|-...-.+..++..... +. .+.+.++.+..++++... -.|.+
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~-----------~~~~~~ili~g~l~~l~~ifG~r~l 152 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TG-----------LPVWAGILIIGVLMTLVTIFGYRAL 152 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CC-----------CcHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45788999999999999999999999888888877761111 11 233444443333332222 23444
Q ss_pred CccchHHHHHHHHHHHHhheeeeechhhhhccCccccccccchhhhHHHHHHHhhhc-cceeeccccccCcchh--hHHh
Q 014330 184 THLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFE-GVGMILPLESETRNKQ--RFGR 260 (426)
Q Consensus 184 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~--~~~~ 260 (426)
+.+.+++................++.......+ .....++.++..+++...=.+. .-...+.+.+.+|+|+ |.-.
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~--~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~ 230 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLDALW--VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFL 230 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceee--ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHH
Confidence 444444444433333332222222211111011 1111255566666655433332 4445566888888877 8888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccc-ccceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC-cchh
Q 014330 261 ILGWCMAFISLLYGSFGALGYFAFGEET-KDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD-YRYC 338 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~~~~gy~~fG~~~-~~~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~-~~~~ 338 (426)
....+..+...+-++.|...-..-|+.. ..+....++. +...+.+...+...++-...+++..-.+.+...+ +|.+
T Consensus 231 ~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~k~~ 308 (442)
T COG1457 231 AAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLSKVT 308 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhhhHH
Confidence 8888888888888888888888887665 2222222322 6667777778888888888888888888888763 2222
Q ss_pred hHHHHHHHHHHHHHhhc----cCCcchhhhhcchhhh
Q 014330 339 LWLRWAVVLGVSLVALL----VPNFADFLSLVGSSVC 371 (426)
Q Consensus 339 ~~~~~~~~~~~~~va~~----~p~~~~i~~~~G~~~~ 371 (426)
...-... .+.++++.. ..+++..+.+.|+...
T Consensus 309 ~~v~~~v-~igt~la~~~~~f~~~f~~Fl~~i~~~i~ 344 (442)
T COG1457 309 RVVIAGV-GIGTLLALAGPFFYNFFENFLLLLGYFIP 344 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 133444443 4456666666554443
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.56 E-value=2.1e-05 Score=76.10 Aligned_cols=268 Identities=12% Similarity=-0.037 Sum_probs=147.9
Q ss_pred HHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhh
Q 014330 38 KTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGR 117 (426)
Q Consensus 38 ~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 117 (426)
...+++.+-..|+.... .++..+++..++...+...-.-+......+ ..-++.-+.|..||++|.
T Consensus 9 ~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~--------~Gl~~~v~sR~~FG~~Gs 73 (386)
T TIGR02358 9 GAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGAD--------TGLSAMGSLKLSLGSKGS 73 (386)
T ss_pred HHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cCcCHHHHHHHHHccchh
Confidence 33444445555543211 445555555555555444433333333322 335677889999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHH
Q 014330 118 VAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVD 197 (426)
Q Consensus 118 ~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~ 197 (426)
++..+...+...|-........++.++.+.+...+.+ +......+...+..+.+ ....+.++++..++..+.
T Consensus 74 ~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~-------~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~ 145 (386)
T TIGR02358 74 VLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE-------SPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLL 145 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888998888876422110 11112222222222222 234455555555555544
Q ss_pred HHHhheeeeechhhh-hccCccccccccchhhhHHHHHHHh-hhccceeeccccccCcchhhHHhHHHHHHHHHHHHHHH
Q 014330 198 LGAMGLVMVEDVMIS-MKQRPALKAFGDFSVFSYGIGVAVY-AFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGS 275 (426)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f-af~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~ 275 (426)
........+...... .....+ ..++ ..+..++....- .-......|.+.|..|+|||..+....+..+...+-.+
T Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~--~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~ 222 (386)
T TIGR02358 146 LIATLWLLVVVFSKADLSELWN--RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYF 222 (386)
T ss_pred HHHHHHHHHHHHhccchhhhcC--CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHH
Confidence 443333222111110 000000 0001 223333322221 11223347889999999999888899999999999888
Q ss_pred HhhhhhhccccccccceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC
Q 014330 276 FGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD 334 (426)
Q Consensus 276 ~~~~gy~~fG~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~ 334 (426)
+|.......++. |..+.+.........-+...++..++-....++....+.+.+++
T Consensus 223 ~G~~~~~a~~~~---d~~~~~~~~g~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~ 278 (386)
T TIGR02358 223 LGLAVTLATGQT---DIISILAGAGLGIPALLIILLSTVTTTFMDIYSAAISTGNLLPR 278 (386)
T ss_pred HHHHHHHhcCCC---CHHHHHHhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888777666543 22222221122223444555566666777788888888888743
No 58
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.56 E-value=3.2e-05 Score=76.51 Aligned_cols=297 Identities=11% Similarity=-0.031 Sum_probs=153.4
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhh--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 30 SKPLSTRSKTFANVFISIVGAGVLGLPYTFKK--TGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
++|+.+.++-+..-.+..+...-+........ .++..+++..++...+...-..+......| ..-++..+
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r--------~Gl~~~v~ 81 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAK--------YGLPFPVL 81 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH--------hCCCcchh
Confidence 34445655555444444444333333333222 344555655555555544444444444443 33577788
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCccccccc--ccchhHHHHHHhHHHhhhccccccCc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGF--LSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
.|..||++|..+..++..+...|-...-....++.+...+....++....+. .........+...+.+++......+.
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~ 161 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKI 161 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 9999999999999999999999999988888888777766543221000000 00112222222333333333333333
Q ss_pred cchHHHHHH---HHHHHHhheeeeech--hhhhccCccccccccchhhhHHHHHHH-hhhccceeeccccccCcchhhHH
Q 014330 186 LAPLSIFAD---IVDLGAMGLVMVEDV--MISMKQRPALKAFGDFSVFSYGIGVAV-YAFEGVGMILPLESETRNKQRFG 259 (426)
Q Consensus 186 ~~~~s~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~~~~~~ 259 (426)
..+....+. ...+........... .+.....+..........+..++...+ +.-..-.+.+.+.+.+|+|++-.
T Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~ 241 (442)
T TIGR00800 162 RHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchH
Confidence 333333333 222222221111111 100001110011112234555555432 22345567888999999988877
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhc----cccccccc--eeccccCChhhHHH------HHHHHH-HHHhhccccccchHH
Q 014330 260 RILGWCMAFISLLYGSFGALGYFA----FGEETKDI--ITTNFGAGLVSTLV------NVGLCV-NLFLTFPLMMNPVYE 326 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~~~~gy~~----fG~~~~~~--i~~~~~~~~~~~~~------~i~~~~-~~~~s~pl~~~~~~~ 326 (426)
+....++....+....+|+.+-.. +|+...+. ....+......... .++..+ ...+......++...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l 321 (442)
T TIGR00800 242 WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGL 321 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 778888888888877777777665 76543332 22223222222111 123322 222466777888888
Q ss_pred HHHHhhcC
Q 014330 327 VVERRFCD 334 (426)
Q Consensus 327 ~l~~~~~~ 334 (426)
.+.+.+.+
T Consensus 322 ~l~~l~~~ 329 (442)
T TIGR00800 322 DIAALLPK 329 (442)
T ss_pred HHHHhCcC
Confidence 88888754
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.50 E-value=8.2e-05 Score=74.08 Aligned_cols=334 Identities=12% Similarity=0.019 Sum_probs=161.1
Q ss_pred CCCCCCChHHHHHHHH-------HHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcc
Q 014330 29 KSKPLSTRSKTFANVF-------ISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKI 101 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~-------~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 101 (426)
+++|+.++++-+..-. +..+++|.+++ ..++..+++.+++...+...-+.+......+ ..
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~-----GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~--------~G 88 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFIL-----GLSTFSIMLAIILSAFFIAAVMVLNGAAGSK--------YG 88 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHHHHHHHHhcccccc--------cC
Confidence 4455555554333322 32344454432 2344445555555544444433333333322 33
Q ss_pred ccccchhHHhhchhhhHHHHHHHH-HHHhhhhHHHHHHHHhhhhhhc----ccCCC--ccc-ccccccchhHHHHHHhHH
Q 014330 102 NSFGDLGYTVCGSVGRVAVDAMIV-LAQAGFCVSYLIFIANTLTHMI----NNSTT--SQT-ILGFLSPKALYIWGCFPF 173 (426)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~~~~~~~l~~~~----~~~~~--~~~-~~~~~~~~~~~~~~~~~~ 173 (426)
-++.-+.|..||++|.++..+... +..++-........++.+..++ +...+ ++. ..+..........+..++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 578888999999999989888884 4555555555555666655433 22111 000 000011111211222333
Q ss_pred HhhhccccccCccchHHHHHHHHHHHHhheeeee-----chhhhhccCcc-ccc-cccchhhhHHHHHHHhhhc-cceee
Q 014330 174 QLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVE-----DVMISMKQRPA-LKA-FGDFSVFSYGIGVAVYAFE-GVGMI 245 (426)
Q Consensus 174 ~~pl~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~faf~-~~~~~ 245 (426)
..+.. ....+.+++++.++........+...+. +.....+..++ ... ....-.+..++...+=++. ...+.
T Consensus 169 ~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~ 247 (484)
T PRK11375 169 NVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSA 247 (484)
T ss_pred HHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccc
Confidence 33333 3344445444444443333222221111 11111111111 000 0011234444433333444 45588
Q ss_pred ccccccCcchhhHHhHHHHHHHHHHHHHHHHhhhh----hhcccccccc--ceeccccCChhhHHHHHHHHHHHHhh-cc
Q 014330 246 LPLESETRNKQRFGRILGWCMAFISLLYGSFGALG----YFAFGEETKD--IITTNFGAGLVSTLVNVGLCVNLFLT-FP 318 (426)
Q Consensus 246 ~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~g----y~~fG~~~~~--~i~~~~~~~~~~~~~~i~~~~~~~~s-~p 318 (426)
|.+.|..|++|+..+....++.+...+...+|+.. ...+|....| ++..++.+.....++.+...++..++ ..
T Consensus 248 ~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~ 327 (484)
T PRK11375 248 SDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNAT 327 (484)
T ss_pred cchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999888888878877776665555443 3456654333 23333333344445555566666666 34
Q ss_pred ccccchHHHHHHhhcCcchhhHHHHHHHHHHHHHhh--ccCC---cchhhhhcchhhhhhHHH
Q 014330 319 LMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVAL--LVPN---FADFLSLVGSSVCCILGF 376 (426)
Q Consensus 319 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~--~~p~---~~~i~~~~G~~~~~~~~~ 376 (426)
...++....+.+.+.++..++....+...+..+++- ...+ +...+++.|++.+.....
T Consensus 328 ~N~ys~~~~l~~l~pk~i~~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gI 390 (484)
T PRK11375 328 GNIIPAGYQIAALAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGV 390 (484)
T ss_pred hhcccHHHHHHHhCcCccchhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999886432222222222222222222 1223 556666666555444433
No 60
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.34 E-value=0.0003 Score=67.30 Aligned_cols=312 Identities=15% Similarity=0.167 Sum_probs=157.5
Q ss_pred HHHHHhhhhhhchhhHHHhh-h--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhH
Q 014330 42 NVFISIVGAGVLGLPYTFKK-T--GWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRV 118 (426)
Q Consensus 42 ~l~~~~iG~GiL~LP~a~~~-~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (426)
.+...-+|+|.|-.|-...+ + .|..+.+..++.++..-..+.. +..+ .+ .+|+++.++. ||+...
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~-------~g-G~~~~l~~~~-g~~f~~ 70 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALAL-------VG-GGYDSLSARI-GKVFGI 70 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeee-------cC-CCHHHHHHHh-ChHHHH
Confidence 45677899999999965443 3 4556677777777666655544 1111 22 5888888776 677666
Q ss_pred HHHHHHHHHHh-------hhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHH
Q 014330 119 AVDAMIVLAQA-------GFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSI 191 (426)
Q Consensus 119 ~~~~~~~~~~~-------g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~ 191 (426)
+..+.+.+..- ...++|-.. +.+++++...+ ........+.+.+.+ +...+.-|...+++.
T Consensus 71 lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~~-------~~l~i~siiff~i~~-~l~~~~~k~~~~iGk 138 (378)
T TIGR00796 71 LFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHSPTSL-------LALFIFSLIFFAVVL-LLSLNPSKLIDRVGK 138 (378)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCcccch-------HHHHHHHHHHHHHHH-HHHcCcccHHHHhHH
Confidence 66655554322 122333322 34444421100 111112222222211 123455555666666
Q ss_pred HHHHHHHHHhheeeeechhhhhccC-ccccccccchhhhHHHHHHHhhhc-------cceeeccccc-cCcchhh-HHhH
Q 014330 192 FADIVDLGAMGLVMVEDVMISMKQR-PALKAFGDFSVFSYGIGVAVYAFE-------GVGMILPLES-ETRNKQR-FGRI 261 (426)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~-------~~~~~~~i~~-~m~~~~~-~~~~ 261 (426)
+.+...+......++.....+.... ++...+.+...+.+++-...+++. +...+-.+.+ |+||||| .+++
T Consensus 139 ~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~ 218 (378)
T TIGR00796 139 FLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYT 218 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6665555555544444433221111 111111010234444444444444 4555555555 9999866 5666
Q ss_pred HHHHH-HH--HHHHHHHHhhhhhhcccc--c--cccceeccccC----ChhhHHHHHHHHHHHHhhccccccchHHHHHH
Q 014330 262 LGWCM-AF--ISLLYGSFGALGYFAFGE--E--TKDIITTNFGA----GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 330 (426)
Q Consensus 262 ~~~~~-~~--~~~~Y~~~~~~gy~~fG~--~--~~~~i~~~~~~----~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~ 330 (426)
...+. .. ...+|.-.+..|...-+. + ..+.++.+..+ +.-..+..+...++++++.--......+.+++
T Consensus 219 i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~ 298 (378)
T TIGR00796 219 IKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHK 298 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 22 333344444444332211 1 01122222221 23455666677777887777777778888888
Q ss_pred hhcCcchhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHH
Q 014330 331 RFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHL 384 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~ 384 (426)
...+-+++.|. .+....+.+++.. +++.++++ ....+.++.|...-+
T Consensus 299 ~~~k~~y~~~v-~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~l 345 (378)
T TIGR00796 299 LVPKLSYKTWV-IVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVL 345 (378)
T ss_pred hcCCCCHHHHH-HHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHH
Confidence 76654454443 3333444444443 56677764 345666666766544
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.28 E-value=0.00025 Score=69.47 Aligned_cols=147 Identities=13% Similarity=0.041 Sum_probs=87.2
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.|+.+++...+.+..+.+|++ +++.|-...+.|+. +....+............+.+-.++ .+..|..|+-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~-------~~~~T~~e~~~ 76 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRR-------SGAVTIPEYLE 76 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHH-------TT--SHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcc-------cchhhhhhhhh
Confidence 467788888888888888775 47789888888886 3333333333333344444444443 57789999999
Q ss_pred Hhhchhh--hHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 110 TVCGSVG--RVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 110 ~~~G~~~--~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
+-||++. +.+..+...+.........+...+..++.+++- +....+++...+.........++...
T Consensus 77 ~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi------------~~~~~~~i~~~i~~iYt~~GGl~av~ 144 (406)
T PF00474_consen 77 KRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI------------PYNTAILIVGVIVIIYTFFGGLRAVA 144 (406)
T ss_dssp HHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHTTCTT------
T ss_pred hhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch------------hhhHHHHHHHHHHHHhhhhhhHhhhh
Confidence 9999998 777777777777788888888888888887651 22333334444444567777888777
Q ss_pred hHHHHHHHHH
Q 014330 188 PLSIFADIVD 197 (426)
Q Consensus 188 ~~s~~~~~~~ 197 (426)
+...+=.+++
T Consensus 145 ~td~iQ~~i~ 154 (406)
T PF00474_consen 145 WTDFIQGVIM 154 (406)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6664444433
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=98.24 E-value=0.00021 Score=69.77 Aligned_cols=284 Identities=18% Similarity=0.034 Sum_probs=137.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHh
Q 014330 62 TGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIAN 141 (426)
Q Consensus 62 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~ 141 (426)
.++..+++.+++...+...-..+......| ..-++..+.|..||++|.++..+...+...+-........+.
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k--------~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~ 110 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAK--------TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAI 110 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444445555555444433333333333222 345788889999999999999999888887766666666666
Q ss_pred hhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchHHHHHHHHHHHHhheeeeechh--hhhccCccc
Q 014330 142 TLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVM--ISMKQRPAL 219 (426)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 219 (426)
.++...+. .. .....++..........-.|.++.+.++..................... ......++.
T Consensus 111 ~l~~~~~~-~~---------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (404)
T PRK11017 111 PVVKATGL-DI---------NLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPA 180 (404)
T ss_pred HHHHHhCC-CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCC
Confidence 66554431 11 1111111111111112223455554444444333322222111111111 111111111
Q ss_pred cccccchhhhHHHHHHHhh-hccceeeccccccCcchhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccC
Q 014330 220 KAFGDFSVFSYGIGVAVYA-FEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGA 298 (426)
Q Consensus 220 ~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~ 298 (426)
....+..++....=. -..-.+.+.+.|..|++|+.......++.+...+-.++|...-...|+. |+.+.+..
T Consensus 181 ----~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~---d~~~~~~~ 253 (404)
T PRK11017 181 ----EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA---DISDVMIA 253 (404)
T ss_pred ----CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHH
Confidence 122445555443322 3345678889999998887667777777777776666776655555542 22222221
Q ss_pred ChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcchhhHHHHHHHHHHHHHhh-ccCCcchhhhhcchhhhh
Q 014330 299 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVAL-LVPNFADFLSLVGSSVCC 372 (426)
Q Consensus 299 ~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~-~~p~~~~i~~~~G~~~~~ 372 (426)
.......-+...+...++-....+...-.+.+..+.++++ ...+...+.++++. +..++...+++.|.....
T Consensus 254 ~~~~~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~~~~~--~~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P 326 (404)
T PRK11017 254 QGLLIPAIVMLGLNIWTTNDNALYASGLGFCNITRLSSRT--LTVVNGIIGTVLALWLYNNFVGWLTLLGSAIPP 326 (404)
T ss_pred hchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2222223333444444444455555555566665433332 22222222333332 335566666665544433
No 63
>PRK12488 acetate permease; Provisional
Probab=98.18 E-value=0.005 Score=62.59 Aligned_cols=148 Identities=11% Similarity=0.041 Sum_probs=93.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhCCCccccccch
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYY-CMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
..|+.+++...+.+..+.++++. ++.|-...+.|+. +....+ ...+.+. ...++.+-.++ .+..|..|.
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~-g~~~g~~~~~~~~a~~lr~-------~g~~T~~d~ 135 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYAL-GVLAGWPIILFLIAERLRN-------LGKYTFADV 135 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHH-HHHHHHHHHHHHHHHHHHH-------CCCcchHHH
Confidence 35778888888888888777765 7899877788875 322221 1112211 12223332333 466899998
Q ss_pred hHHhhc-hhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 108 GYTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 108 ~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
-++-|| |+.|.+..+...+.........+...+..++.+++ .+...-+++..+++........++..
T Consensus 136 l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g------------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 136 VSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG------------ISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHHHHhccchhHH
Confidence 877777 56888888888888778788888888888877754 12233333444444456667788887
Q ss_pred chHHHHHHHHHH
Q 014330 187 APLSIFADIVDL 198 (426)
Q Consensus 187 ~~~s~~~~~~~~ 198 (426)
.+...+=.+.++
T Consensus 204 ~~td~iQ~~im~ 215 (549)
T PRK12488 204 TWVQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHHHH
Confidence 777655444443
No 64
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.17 E-value=0.0028 Score=63.33 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=124.5
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+.+.....+..+.+|++. ++.|-...+.|+........ .....+.....+.+-..+. .++.+..|..|+-
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~T~~e~l 113 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAII---SRKYNAITINDVL 113 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHcCCccHHHHH
Confidence 46788999999999999888776 67887777777642111110 0111111112222111111 1125778999999
Q ss_pred HHhhchh-hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 109 YTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 109 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
++-||++ .+.+..+...+..++...+.+...+..++.+++- +.+.-+++...++........++...
T Consensus 114 ~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi------------~~~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 114 KARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL------------SYLTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999966 4677888888877777777777788888777641 22233333333344456667777776
Q ss_pred hHHHHHHHHHHHHhheee----ee--chhh---hhc-cCccc-cccc--cc--hhhhHHHH-HHHhhhccceeecccccc
Q 014330 188 PLSIFADIVDLGAMGLVM----VE--DVMI---SMK-QRPAL-KAFG--DF--SVFSYGIG-VAVYAFEGVGMILPLESE 251 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~----~~--~~~~---~~~-~~~~~-~~~~--~~--~~~~~~~~-~~~faf~~~~~~~~i~~~ 251 (426)
+...+=.+.++....++. .. +..+ ..+ ..++. .+++ ++ .....++. ...+...+.+....-.-.
T Consensus 182 ~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~a 261 (471)
T TIGR02119 182 LTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMS 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHh
Confidence 665444433332211111 11 1111 011 11111 1110 10 01111221 112222222222222344
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHHHhhhhhhc
Q 014330 252 TRNKQRFGRILGWCMAFISLLYGSFGALGYFA 283 (426)
Q Consensus 252 m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~ 283 (426)
.||+|+.+|....+..+...++......|...
T Consensus 262 ak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 262 YKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred cCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 67788899998888777777766655555443
No 65
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.15 E-value=0.0063 Score=61.91 Aligned_cols=144 Identities=10% Similarity=0.041 Sum_probs=85.1
Q ss_pred CCCCChHHHHHHHHHHhhh-hhhchhhHHHhhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 31 KPLSTRSKTFANVFISIVG-AGVLGLPYTFKKTGWIMGLLMLFSVAALTY-YCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG-~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
.++.+.+.....+..+.++ ...++.|-...+.|+- +....+. ..+.. ....++.+-.++ .+..|..|.-
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr-------~g~~T~~d~l 136 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRN-------LGRYTFADVA 136 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHH-------cCCccHHHHH
Confidence 4667677666666666555 5668899777777875 3322211 11111 222333333333 4668999988
Q ss_pred HHhhc-hhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 109 YTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 109 ~~~~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
++-|| |..+.+..+...+.........+...+..++.+++- +...-+++..+++........++...
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi------------~~~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL------------NYHVAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 77776 557887777777776777777777777777777541 12233333334444456667777766
Q ss_pred hHHHHHHH
Q 014330 188 PLSIFADI 195 (426)
Q Consensus 188 ~~s~~~~~ 195 (426)
+...+=.+
T Consensus 205 ~td~iQ~~ 212 (549)
T TIGR02711 205 WVQIIKAV 212 (549)
T ss_pred HHHHHHHH
Confidence 66644433
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.11 E-value=0.0066 Score=60.85 Aligned_cols=147 Identities=10% Similarity=-0.105 Sum_probs=85.1
Q ss_pred CCCCCChHHHHHHHHHHhhhh-hhchhhHHHhhhcHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHhhhhhCCCcccccc
Q 014330 30 SKPLSTRSKTFANVFISIVGA-GVLGLPYTFKKTGWIMGLLML--FSVAA-LTYYCMMLLVHTRRKLETIHGFSKINSFG 105 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~G~~~g~i~l--~~~~~-~~~~t~~~l~~~~~~~~~~~~~~~~~~y~ 105 (426)
..|+.+++...+.+..+.+|+ ..++.|-...+.|+....... ..... ...+-+..+.+-.++ .+..|..
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-------~~~~T~~ 111 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK-------YNAVTLN 111 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCccHH
Confidence 467788888888888887766 457788766677764211111 01111 111112222222233 5778999
Q ss_pred chhHHhhchh-hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccC
Q 014330 106 DLGYTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLT 184 (426)
Q Consensus 106 ~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 184 (426)
|+-++-||++ .+.+..+...+..+....+.+...+..++.+++- +....+++..+++.......+++
T Consensus 112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi------------~~~~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI------------SYETGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHHHHHhccHH
Confidence 9999988876 4666666666666666677777777777777641 12233333333334466677777
Q ss_pred ccchHHHHHHH
Q 014330 185 HLAPLSIFADI 195 (426)
Q Consensus 185 ~~~~~s~~~~~ 195 (426)
...+...+=.+
T Consensus 180 av~~TD~iQ~~ 190 (483)
T PRK09442 180 AVVLTDALQGI 190 (483)
T ss_pred HHHHHHHHHHH
Confidence 76665544433
No 67
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.05 E-value=0.0039 Score=61.06 Aligned_cols=147 Identities=13% Similarity=-0.031 Sum_probs=93.9
Q ss_pred CCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.|+.+++...+.+..+.+|++. ++.|....+.|+. +....+...........+..+..++ .+..|..|.-+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~T~~e~l~ 73 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN-------NGAYTMPEYLE 73 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCchhHHHH
Confidence 4667778888888777776654 7889877788864 3322222222222333444443333 46789999999
Q ss_pred Hhhchh-hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 110 TVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 110 ~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
+-||++ .+.+..+...+..+....+.+...+..++.+.+- +.+..+++...+++.......++...+
T Consensus 74 ~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi------------~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 74 KRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL------------DLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------hHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 999984 7777778888888888888888888888887641 123333333344444566677777666
Q ss_pred HHHHHHHHH
Q 014330 189 LSIFADIVD 197 (426)
Q Consensus 189 ~s~~~~~~~ 197 (426)
...+=.+++
T Consensus 142 Td~iQ~~i~ 150 (407)
T TIGR00813 142 TDTIQAVIM 150 (407)
T ss_pred HHHHHHHHH
Confidence 665444433
No 68
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.96 E-value=5.7e-05 Score=74.81 Aligned_cols=338 Identities=13% Similarity=-0.003 Sum_probs=152.9
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHh--hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFK--KTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~--~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+++|+.+.++-+..-.+..+....+.+..... ..++..+++.+++...+...-.-+......| ...+...
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r--------~Gl~~~v 75 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR--------TGLPTMV 75 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC--------C---HHH
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc--------cCCCchh
Confidence 44566667766666555555555554444332 2344556666666555554444444443333 3356677
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccc-----cccchhHHHHHHhHHHhhhcccc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILG-----FLSPKALYIWGCFPFQLGLNSIP 181 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~pl~~~~ 181 (426)
+.|..||.+|..+..+...+...|-...-....++.+....+....+..+.+ .........++..++... ....
T Consensus 76 ~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 154 (440)
T PF02133_consen 76 LSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTL-FAIY 154 (440)
T ss_dssp HTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHH-HHCT
T ss_pred cchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHH-HHhc
Confidence 8899999999999999999999999888888999999988875422100000 001111111111122221 1223
Q ss_pred ccCccchHHHHHHHHHHHHhheeeeechhh----hhccCccccccccchhhhHHHHHHHhhhc-cceeeccccccCcchh
Q 014330 182 TLTHLAPLSIFADIVDLGAMGLVMVEDVMI----SMKQRPALKAFGDFSVFSYGIGVAVYAFE-GVGMILPLESETRNKQ 256 (426)
Q Consensus 182 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~ 256 (426)
..+.+.++................+..... .....+.... ....+..++....-.+. .-.+.+.+.+.+|+++
T Consensus 155 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~ 232 (440)
T PF02133_consen 155 GMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPS--PSGSFLAAIALVIGSWISWAPNASDYSRYAKSDT 232 (440)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S------S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HH
T ss_pred CHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccch--hHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCC
Confidence 444444444444333332221111111111 1111111000 01123333333322222 3344557889999988
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhhhhhccc----cccccc--eeccccCChhhHHHHH-HHHHHHHhhccccccchHHHHH
Q 014330 257 RFGRILGWCMAFISLLYGSFGALGYFAFG----EETKDI--ITTNFGAGLVSTLVNV-GLCVNLFLTFPLMMNPVYEVVE 329 (426)
Q Consensus 257 ~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG----~~~~~~--i~~~~~~~~~~~~~~i-~~~~~~~~s~pl~~~~~~~~l~ 329 (426)
+..+....++.........+++.+...-+ ++..+. +...+.+.....+..+ .......+..-...++....+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~ 312 (440)
T PF02133_consen 233 SAWWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQ 312 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHH
T ss_pred CcEEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Confidence 88888888888877777777766654432 222111 1222222211111111 2222333344556677777777
Q ss_pred HhhcCcchhhHHHHHHHHHHHH--HhhccCC----cchhhhhcchhhhhhHHHH
Q 014330 330 RRFCDYRYCLWLRWAVVLGVSL--VALLVPN----FADFLSLVGSSVCCILGFV 377 (426)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~--va~~~p~----~~~i~~~~G~~~~~~~~~i 377 (426)
+.++++-.++..+.+...+..+ ......+ +...+++.|..........
T Consensus 313 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~ 366 (440)
T PF02133_consen 313 NIFPKRISRRRGVIIVGVIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIM 366 (440)
T ss_dssp CCSTTT--HHHHHHHHHHHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHH
T ss_pred HccceeecchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHH
Confidence 7776222222222222222222 2212333 4456777776666555544
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.92 E-value=0.0042 Score=60.14 Aligned_cols=306 Identities=14% Similarity=0.079 Sum_probs=150.3
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccc-----
Q 014330 31 KPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSF----- 104 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y----- 104 (426)
+++.|.+|+.+....+.+|.| +++.|.+.+..| ..++..+-+.+++..-+.+...-...++++ ++++.+|
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~---~~~~g~~~GGP~ 119 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE---RDADGVFRGGPM 119 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee---eCCCCCEecChH
Confidence 356999999999999999998 999999976665 556555555555555444444444444332 1333446
Q ss_pred cchhHHhhchhhhHHHHHHHHHHHhh-hhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcccccc
Q 014330 105 GDLGYTVCGSVGRVAVDAMIVLAQAG-FCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTL 183 (426)
Q Consensus 105 ~~l~~~~~G~~~~~~~~~~~~~~~~g-~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 183 (426)
.++-+...||+...+..++ .+..++ ..........+.+++.++ .+.+....+.. +...+.....+
T Consensus 120 yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~------------~~~~v~~i~l~-~l~~~vi~GGi 185 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN------------VPKLVTGIVLT-VLTALIIFGGL 185 (425)
T ss_pred HHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC------------CcHHHHHHHHH-HHHHHHHhcCc
Confidence 6777778888877777777 333322 233334444444443221 12222222222 22223345688
Q ss_pred CccchHHHHHHHHHHHHh----heeeeechhhhhccCccc--ccc------ccchh------hhHHHHHHHhhhc-ccee
Q 014330 184 THLAPLSIFADIVDLGAM----GLVMVEDVMISMKQRPAL--KAF------GDFSV------FSYGIGVAVYAFE-GVGM 244 (426)
Q Consensus 184 ~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~------~~~~~------~~~~~~~~~faf~-~~~~ 244 (426)
|.++.++...+..+.... ..+......+..+....+ ..+ +...+ +-..+.--+||-. |...
T Consensus 186 k~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gs 265 (425)
T TIGR00835 186 KRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGS 265 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCc
Confidence 888888866655543322 111121222111100000 001 01111 1123333455544 5555
Q ss_pred eccccc--cCcchhhHHhHHHHHHHH-HHHHHHHHhhhhhh--ccc-c-cccc-cee-cccc---CChhhHHHHHHHHHH
Q 014330 245 ILPLES--ETRNKQRFGRILGWCMAF-ISLLYGSFGALGYF--AFG-E-ETKD-IIT-TNFG---AGLVSTLVNVGLCVN 312 (426)
Q Consensus 245 ~~~i~~--~m~~~~~~~~~~~~~~~~-~~~~Y~~~~~~gy~--~fG-~-~~~~-~i~-~~~~---~~~~~~~~~i~~~~~ 312 (426)
.|..+. +-++|.|=.-.-..+..+ +.++....++.-.. .+. + +.++ .+. ..+. .++...+..+++.+-
T Consensus 266 a~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lF 345 (425)
T TIGR00835 266 APIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLF 345 (425)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555544 345575544444444444 23334444432221 121 0 1111 111 1121 123445555555555
Q ss_pred HHhhccccccchHHHHHHhhcCcchhhHHHHHHHHHHHHHhhc
Q 014330 313 LFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALL 355 (426)
Q Consensus 313 ~~~s~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~ 355 (426)
-+++.--..+-...+++.++.++. ....|.+.+..+.+-+..
T Consensus 346 aftTii~~~yyge~~~~yl~~~~~-~~~~r~~~~~~~~~g~~~ 387 (425)
T TIGR00835 346 AFSTIIGWYYYGEKNAEFLKGNKK-VKLYRLVFLAAVFVGAFL 387 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc-cceeeehhhHHHHHHHHh
Confidence 566666666667777777665442 334566666655555543
No 70
>PRK09395 actP acetate permease; Provisional
Probab=97.91 E-value=0.027 Score=57.42 Aligned_cols=144 Identities=9% Similarity=-0.035 Sum_probs=86.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+++...+.+..+.+|++. ++.|-...+.|+.. ....+...+-......++.+-.+ +.+..|+.|.-
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r-------~~g~~T~~d~l 138 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLR-------NLGKYTFADVA 138 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHh-------hCCCccHHHHH
Confidence 45778888777778788777554 78897777888752 22221111111111222222222 25678999998
Q ss_pred HHhhc-hhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 109 YTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 109 ~~~~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
++-|| |+.|.+..+...+.......+.+...+..++.+.+ .+...-+.+..+++........++...
T Consensus 139 ~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g------------i~~~~~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 139 SYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG------------LNYHVAVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 88888 45888888877776666666777777777777654 122333334444444466667777766
Q ss_pred hHHHHH
Q 014330 188 PLSIFA 193 (426)
Q Consensus 188 ~~s~~~ 193 (426)
+...+=
T Consensus 207 ~TD~iQ 212 (551)
T PRK09395 207 WVQIIK 212 (551)
T ss_pred HHHHHH
Confidence 665443
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.76 E-value=0.021 Score=57.20 Aligned_cols=115 Identities=13% Similarity=0.024 Sum_probs=79.9
Q ss_pred CCCCCChHHHHHHHHHHhhh-hhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVG-AGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+.+-.......+..+ .-++++|-...+.|+......... .+.......++.+-..++.+ +.+..|..|.-
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~-~~~~~~~~~~~~~rl~~~~~---~~~~~T~~d~l 111 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGL-LIGAFLLWLLFAPRLRRLAK---ARGATTIPDFL 111 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc---ccCCccHHHHH
Confidence 34666666666666666666 778999988888888743333332 12222223333322222221 35778999999
Q ss_pred HHhhc-hhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcc
Q 014330 109 YTVCG-SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 148 (426)
Q Consensus 109 ~~~~G-~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (426)
++-|| +..+.+..+...+.....+...++..+..++..++
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 99999 88999999999999999999999999999876665
No 72
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.71 E-value=0.051 Score=52.44 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=152.0
Q ss_pred Cccccccch-hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhh
Q 014330 99 SKINSFGDL-GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGL 177 (426)
Q Consensus 99 ~~~~~y~~l-~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 177 (426)
-+++|+.|. ++|+.-++.|.+..+.-.+..+...++.++-.+..+..+++-. ...-+.+..+++...
T Consensus 101 ~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~------------~~vgv~ig~ilm~~Y 168 (529)
T COG4147 101 LGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP------------YHVGVVIGGILMMVY 168 (529)
T ss_pred cCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC------------ceeehhhHhHHHHHH
Confidence 467889887 5667777899999999988888889999999999998888731 112222233333345
Q ss_pred ccccccCccchHHHHHHHHHHHHhheeee----e---chhhhh------c-c--C-ccccccccchhhhHHHHHHHhhhc
Q 014330 178 NSIPTLTHLAPLSIFADIVDLGAMGLVMV----E---DVMISM------K-Q--R-PALKAFGDFSVFSYGIGVAVYAFE 240 (426)
Q Consensus 178 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~----~---~~~~~~------~-~--~-~~~~~~~~~~~~~~~~~~~~faf~ 240 (426)
.....++..+|.+.+=.+..+....+..+ + +..... + . + ....+....++-.+.++..+--..
T Consensus 169 vv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 169 VVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH
Confidence 56778888888886544443332222111 1 110000 0 0 0 011111122344555555555555
Q ss_pred cceeeccccccC---cchhhHHhHHHHHHHHHHHHHHHHhhhhhhc---ccccccc------------c-----ee-c-c
Q 014330 241 GVGMILPLESET---RNKQRFGRILGWCMAFISLLYGSFGALGYFA---FGEETKD------------I-----IT-T-N 295 (426)
Q Consensus 241 ~~~~~~~i~~~m---~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~---fG~~~~~------------~-----i~-~-~ 295 (426)
|...+|++.-.- ++-|+-++++..+..+...+|+..-+.|+.+ -+++... + +. . |
T Consensus 249 GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n 328 (529)
T COG4147 249 GTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTN 328 (529)
T ss_pred ccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccc
Confidence 777888763332 2347799999999999999999887776643 2322111 0 00 0 1
Q ss_pred c---------c-CC-hhhHHHHHHHHHHHHhhccccccc----hHHHHHHhhcCc----chh---hHHHHHHHHHHHHHh
Q 014330 296 F---------G-AG-LVSTLVNVGLCVNLFLTFPLMMNP----VYEVVERRFCDY----RYC---LWLRWAVVLGVSLVA 353 (426)
Q Consensus 296 ~---------~-~~-~~~~~~~i~~~~~~~~s~pl~~~~----~~~~l~~~~~~~----~~~---~~~~~~~~~~~~~va 353 (426)
. . .+ ....++.......+-+.--+.+.. ..|...+.++++ |.- ++...+..++..+++
T Consensus 329 ~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~~lg 408 (529)
T COG4147 329 MAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLG 408 (529)
T ss_pred hHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHHHhe
Confidence 1 1 12 222333333333333332222221 223334444321 211 223344455566777
Q ss_pred hccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcc
Q 014330 354 LLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQ 389 (426)
Q Consensus 354 ~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~ 389 (426)
+..|+ .+..++|--++...+-.+|.+.+=...||
T Consensus 409 i~~~g--nVaflVa~AF~lAaSa~fPvivlglfWKr 442 (529)
T COG4147 409 ILPPG--NVAFLVALAFALAASANFPVIVLGLFWKR 442 (529)
T ss_pred ecCCc--cHHHHHHHHHHHHHHcccchhhHHHHHhh
Confidence 78777 56666666666677778899876544443
No 73
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.71 E-value=0.0029 Score=63.01 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=65.3
Q ss_pred hhhHHHHHHHhhhccceeeccccccCcchhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccc-cccceeccccCChhhHH
Q 014330 227 VFSYGIGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGEE-TKDIITTNFGAGLVSTL 304 (426)
Q Consensus 227 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~-~~~~i~~~~~~~~~~~~ 304 (426)
++-..|++++=+-.|.-.=.....|+|+|.| .+|-...+....+++|.++.++--..-... ..++..--.+.+....+
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~isl~p~f 374 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHISLHPPF 374 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeeccccchH
Confidence 5566666665555555555567899999966 999999999999999998776544332111 11222111122222223
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHhhcC
Q 014330 305 VNVGLCVNLFLTFPLMMNPVYEVVERRFCD 334 (426)
Q Consensus 305 ~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~ 334 (426)
.-+...-+-+.+.-..+..+.+.++.+-++
T Consensus 375 i~iGi~sttlfss~s~liGasrvL~alakD 404 (945)
T KOG1288|consen 375 ILIGILSTTLFSSMSGLIGASRVLEALAKD 404 (945)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Confidence 333344444555556677788888887764
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.61 E-value=0.11 Score=53.13 Aligned_cols=144 Identities=8% Similarity=-0.022 Sum_probs=86.9
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+++.....+..+.++++ .++.|-...+.|+. +....+...........++.+-.+| .+..|..|.-
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr-------~~~~T~~e~l 101 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRK-------FGKYTVPDFI 101 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH-------CCCccHHHHH
Confidence 4688888888888888877654 57888776677764 2212111111111233444444444 4667888887
Q ss_pred HHhhchh-hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 109 YTVCGSV-GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 109 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
++-||++ .+.+..+...+.........+...+..++.+.+- +...-+++..+++........++...
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi------------~~~~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV------------DFETGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7878755 5777777777777777777777777777776641 22333333334444456667777766
Q ss_pred hHHHHH
Q 014330 188 PLSIFA 193 (426)
Q Consensus 188 ~~s~~~ 193 (426)
+...+=
T Consensus 170 ~TD~iQ 175 (552)
T TIGR03648 170 WTQVAQ 175 (552)
T ss_pred HHHHHH
Confidence 655443
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.56 E-value=0.074 Score=51.97 Aligned_cols=233 Identities=13% Similarity=0.030 Sum_probs=118.2
Q ss_pred CccccccchhHHhhchhhhHHHHHHHH---HHHhhhhHHHHHHHHhhh----hhhcccCCCcccccccccchhHHHHHHh
Q 014330 99 SKINSFGDLGYTVCGSVGRVAVDAMIV---LAQAGFCVSYLIFIANTL----THMINNSTTSQTILGFLSPKALYIWGCF 171 (426)
Q Consensus 99 ~~~~~y~~l~~~~~G~~~~~~~~~~~~---~~~~g~~~~y~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (426)
+..-+|..+.|.-||-++..+-.+... +..+|... -..+..+ ..+.++...++... ........-+++.
T Consensus 100 ~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~-~~lg~tt~~~i~F 175 (497)
T COG1953 100 KYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLS-PLLGLTTLELICF 175 (497)
T ss_pred ccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccc-cccCCcHHHHHHH
Confidence 455689999999999887655554443 33344332 2233333 33333311111000 0112223333333
Q ss_pred HHHhh---hccccccCccchHHHHHHHHHHHHhheeeeechhh--h---hccCc-ccccccc-chhhhHHHHHHHhhh-c
Q 014330 172 PFQLG---LNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMI--S---MKQRP-ALKAFGD-FSVFSYGIGVAVYAF-E 240 (426)
Q Consensus 172 ~~~~p---l~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~~~~~~~-~~~~~~~~~~~~faf-~ 240 (426)
++.+. +...+..+.++++...+..++...+....+..... . ..+.+ .....+. +..+..+....+=.| .
T Consensus 176 ~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~At 255 (497)
T COG1953 176 FIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWAT 255 (497)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 22221 23346666666666666555555444443322211 1 11111 1111101 112222222211111 2
Q ss_pred cceeeccccccCcchhhHHhHHHHHHHHHHHHHHHHhhh----hhhccccccc--cceeccccCChhhH-HHHHHH-HHH
Q 014330 241 GVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGAL----GYFAFGEETK--DIITTNFGAGLVST-LVNVGL-CVN 312 (426)
Q Consensus 241 ~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~----gy~~fG~~~~--~~i~~~~~~~~~~~-~~~i~~-~~~ 312 (426)
...|.|...|+-|+||+-.+.-.++..+.+.+..++|++ ++..||++.- .++..++.+..... ++.+.. ..+
T Consensus 256 l~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iat 335 (497)
T COG1953 256 LALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVAT 335 (497)
T ss_pred HhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 567888999999998876666677777777776666644 4567898854 46778887664443 444333 334
Q ss_pred HHhhccccccchHHHHHHhhcCc
Q 014330 313 LFLTFPLMMNPVYEVVERRFCDY 335 (426)
Q Consensus 313 ~~~s~pl~~~~~~~~l~~~~~~~ 335 (426)
+.+...-...+.-..+.+++.+.
T Consensus 336 i~~Ni~aN~vsp~~D~s~l~Pk~ 358 (497)
T COG1953 336 ISTNIAANIVSPGYDLSALFPKY 358 (497)
T ss_pred HhhhHHhccCChHHHHHHhcccc
Confidence 44555566667777777777543
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.53 E-value=0.1 Score=51.32 Aligned_cols=48 Identities=10% Similarity=-0.166 Sum_probs=36.6
Q ss_pred ccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhc
Q 014330 100 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI 147 (426)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (426)
...+..|+.++-+||+..++..+...+.+.++..+...-.+.-++.++
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446788999999999988888877777777777777776666665554
No 77
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.52 E-value=0.0055 Score=57.33 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhc
Q 014330 34 STRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCG 113 (426)
Q Consensus 34 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G 113 (426)
.+.+..+-+=..++-|+|-..=|..-++-||.++.+.+++.+++.---..+..-..+. +++.++.+|++++..|
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv------R~~G~Si~~i~~~~lG 125 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV------RHKGKSIGEIAGKYLG 125 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh------cCCCccHHHHHHHHHH
Confidence 4556667777899999999999988899999999999888777776655555544433 2566899999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 014330 114 SVGRVAVDAMIVLAQAGFCVSYLIFIANTLTH 145 (426)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (426)
|+++.+..+..++.+......+.....+.+.+
T Consensus 126 ~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 126 KRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998888888777777666644
No 78
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.11 Score=50.28 Aligned_cols=304 Identities=12% Similarity=-0.031 Sum_probs=140.2
Q ss_pred cccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccc
Q 014330 101 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 180 (426)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 180 (426)
..+..|..++.++|+..++..+...+....++++...-.+--++-++...... -..+..+...+++ ..
T Consensus 76 G~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~---------g~iItav~~~iil---~~ 143 (416)
T COG1914 76 GKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLII---------GAVITAVDVLIIL---LL 143 (416)
T ss_pred CCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH---------HHHHHHHHHHHHH---Hh
Confidence 35778888888999999999999999999999999998888888877521110 1111111222221 12
Q ss_pred cccCccchHHHHHHHHHHHHhheeeeechhhhhc-cCccccccccc-hhhhHHHHHH------Hhhhccceeecc-cccc
Q 014330 181 PTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMK-QRPALKAFGDF-SVFSYGIGVA------VYAFEGVGMILP-LESE 251 (426)
Q Consensus 181 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~------~faf~~~~~~~~-i~~~ 251 (426)
++.+.+..+.......+...+........+.... ...+..+...+ .......+++ --.|.+.+.+-+ ...+
T Consensus 144 ~~~r~~E~~v~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~ 223 (416)
T COG1914 144 KGYRLLERVVLILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKG 223 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccc
Confidence 2444554444444333333332222211111000 00001111011 1122222221 111222222222 1111
Q ss_pred CcchhhHHh---HHHHHHHHHHHHHHHHhhhhhhcc-ccccccceecccc------C---ChhhHHHHHHHHHHHHhhcc
Q 014330 252 TRNKQRFGR---ILGWCMAFISLLYGSFGALGYFAF-GEETKDIITTNFG------A---GLVSTLVNVGLCVNLFLTFP 318 (426)
Q Consensus 252 m~~~~~~~~---~~~~~~~~~~~~Y~~~~~~gy~~f-G~~~~~~i~~~~~------~---~~~~~~~~i~~~~~~~~s~p 318 (426)
-+++++.++ -..+++....++...+-.+....| +++..++..+..+ + +....+.-+..+.+-..+-.
T Consensus 224 ~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~ 303 (416)
T COG1914 224 EENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTV 303 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH
Confidence 111233333 344555555555555544444444 3332222211111 1 11111112222222222222
Q ss_pred ccccchHHHHHHhhcC---c-chhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhcc-----
Q 014330 319 LMMNPVYEVVERRFCD---Y-RYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQ----- 389 (426)
Q Consensus 319 l~~~~~~~~l~~~~~~---~-~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~----- 389 (426)
...+.....++...+. + +++...|......+.++.....+...++.+.+.+.+..+.+..++++.+..+|+
T Consensus 304 ~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~ 383 (416)
T COG1914 304 VATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDY 383 (416)
T ss_pred HHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcc
Confidence 2233333344443331 1 222334433444444444444488999999998888888888888887777664
Q ss_pred cCchhHHhhhHHHHHHHHHHHHHHHHH
Q 014330 390 ELGWNGIVMDAALLVFGVVIGISGTWS 416 (426)
Q Consensus 390 ~~~~~~~~~~~~~~~~g~~~~~~g~~~ 416 (426)
+.+++.++..|.+.++-....+.-.+.
T Consensus 384 ~~~~~~~~~~~~v~~~i~~L~i~li~~ 410 (416)
T COG1914 384 KNPRWLTVLGWIVVILIVALNIILLVG 410 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455555555555544444444443
No 79
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.47 E-value=0.15 Score=51.25 Aligned_cols=151 Identities=10% Similarity=-0.031 Sum_probs=81.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+++...+.+..+.+++. +++.|-...+.|+.. ........+.......++.+-.++..++ +.+..|..|+-
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~--~~~~~T~~e~l 110 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEA--AHNSITLPDFF 110 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHh--hcCCccHHHHH
Confidence 3577888888888877777655 467887777788753 2222221222223333343322222110 24667889999
Q ss_pred HHhhchhh---hHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCc
Q 014330 109 YTVCGSVG---RVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 109 ~~~~G~~~---~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
++-||++. +.+..+...+.........+...+..++.+.+- +...-+++...++........++.
T Consensus 111 ~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi------------~~~~~iii~~~i~~~Yt~~GGl~a 178 (487)
T TIGR02121 111 ENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL------------DYKTGLLIGALIIVIYTFFGGFLA 178 (487)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------cHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99898643 334444444444444555555666666666531 122333333334444566667776
Q ss_pred cchHHHHHHH
Q 014330 186 LAPLSIFADI 195 (426)
Q Consensus 186 ~~~~s~~~~~ 195 (426)
..+...+=.+
T Consensus 179 v~~TD~iQ~~ 188 (487)
T TIGR02121 179 VSWTDFVQGL 188 (487)
T ss_pred HHHHHHHHHH
Confidence 6665544333
No 80
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.38 E-value=0.2 Score=50.54 Aligned_cols=151 Identities=13% Similarity=-0.010 Sum_probs=82.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTY-YCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
..|+.+.+...+.+..+.+++.. ++.|-...+.|+.. ... .+...+.. ....++..-.++ +. +++.+..|..|.
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~-~~~~~~~~~l~~~~~~~~l~~-~~-~~~~~~~T~~e~ 113 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWI-AIGLTLGAWINWKLVAGRLRV-HT-EYNNNALTLPDY 113 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHH-HHHHHHHHHHHHHHHHHHHHH-HH-HHhcCceeHHHH
Confidence 46788888888888888777766 67898777888753 111 11111111 111121111111 11 112466788898
Q ss_pred hHHhhchh---hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccC
Q 014330 108 GYTVCGSV---GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLT 184 (426)
Q Consensus 108 ~~~~~G~~---~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 184 (426)
-++-||++ .+.+..+...+.....+.+-+...+..++.+++ .+....+++...+++.......++
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g------------i~~~~~iii~~~iv~iYt~~GGl~ 181 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG------------MSYETALWAGAAATILYTFIGGFL 181 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHHHHHhhhHH
Confidence 88888864 344455555555555555555556666666654 122333344444444566677777
Q ss_pred ccchHHHHHHHH
Q 014330 185 HLAPLSIFADIV 196 (426)
Q Consensus 185 ~~~~~s~~~~~~ 196 (426)
...+...+=.+.
T Consensus 182 aV~~TD~iQ~~i 193 (502)
T PRK15419 182 AVSWTDTVQASL 193 (502)
T ss_pred HHHHHHHHHHHH
Confidence 766665444433
No 81
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.27 E-value=0.094 Score=50.58 Aligned_cols=302 Identities=16% Similarity=0.106 Sum_probs=150.1
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
+++-.|..+-+....++.||-|= --.||...+.|-..=++..++ ..+..---.++.|..- .++.+.+....|+++.
T Consensus 5 re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~i--Gr~~~~~~~~a~~~l~ 81 (439)
T COG0733 5 REQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAI--GRRGRKNAVGAFRKLA 81 (439)
T ss_pred ccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHh--hhhcCCChhHHHHHhc
Confidence 34567888888999999999884 457999888886633333333 3333222334444322 2222234455666655
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc----CC-----Cccccccccc-chhHHHH-HHhHHHhhh
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINN----ST-----TSQTILGFLS-PKALYIW-GCFPFQLGL 177 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~----~~-----~~~~~~~~~~-~~~~~~~-~~~~~~~pl 177 (426)
. +|+++ .+.....+..+..+.-|.++.+=.+...... .. ..+.+..... ......+ ....+..-+
T Consensus 82 ~---~~~~~-~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~ 157 (439)
T COG0733 82 P---KKKWE-WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTAL 157 (439)
T ss_pred c---Cccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 4 23322 2222323333344444555555444333321 11 0111111111 1111111 111111112
Q ss_pred ccccccCc-cchHHHHHHHHHHHHhheeeeechh-----hhh--ccCccccccccchhhhHHHHHHHhhhc-cceeeccc
Q 014330 178 NSIPTLTH-LAPLSIFADIVDLGAMGLVMVEDVM-----ISM--KQRPALKAFGDFSVFSYGIGVAVYAFE-GVGMILPL 248 (426)
Q Consensus 178 ~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i 248 (426)
...+.++. +.+.+.+.+-..+...++..++... +.. --.|+.....+++....++|...|+.+ |...+.+.
T Consensus 158 iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitY 237 (439)
T COG0733 158 IVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITY 237 (439)
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345444 5555655555444444444443322 111 112333333356778889999988876 66666677
Q ss_pred cccCcchhhHHhHHHHHHHHHHHHHHHHhhhhhh---cccccccc----------ceeccccCC-hhhHHHHHHHHHHHH
Q 014330 249 ESETRNKQRFGRILGWCMAFISLLYGSFGALGYF---AFGEETKD----------IITTNFGAG-LVSTLVNVGLCVNLF 314 (426)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~---~fG~~~~~----------~i~~~~~~~-~~~~~~~i~~~~~~~ 314 (426)
...++++++..+........-..+=.+.|+.-.- .+|.+.++ ++.+.+|-. ....+.-++..++-+
T Consensus 238 sSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAal 317 (439)
T COG0733 238 SSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAAL 317 (439)
T ss_pred HhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence 8888888888776666666655555555443332 34444322 233444422 233344445555666
Q ss_pred hhccccccchHHHHHHhhcCcchh
Q 014330 315 LTFPLMMNPVYEVVERRFCDYRYC 338 (426)
Q Consensus 315 ~s~pl~~~~~~~~l~~~~~~~~~~ 338 (426)
+|..-.+-+....+++.++.+|++
T Consensus 318 TS~iSmlE~~va~l~~~~~~~R~~ 341 (439)
T COG0733 318 TSAISMLEVLVAALIDKFGISRKK 341 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHH
Confidence 666666666666666666655543
No 82
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0073 Score=59.46 Aligned_cols=234 Identities=14% Similarity=0.075 Sum_probs=137.6
Q ss_pred CCCCCCChHHHHHH-HHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFAN-VFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~-l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+.+-+-+++++++. +.-.+.|.=+ |=|++...|+|+..+++++.+...++..|..=..-...+ + +-.....|.-
T Consensus 25 ~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~--~--~vk~Gg~yfl 100 (643)
T KOG2083|consen 25 KGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTR--G--QVKSGGVYFL 100 (643)
T ss_pred CCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeec--c--eeccCcEEEE
Confidence 44445566666543 3333444332 557999999999999999888888877766532222111 1 1112234433
Q ss_pred hhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 107 LGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 107 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
..|..|+..+--+.+++.+.+.-.+..|.+-.++...+++...+.. . ... +..+...+.+. ...-..+.-
T Consensus 101 -is~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~-~----i~g---i~~vt~~ill~-i~~ag~~w~ 170 (643)
T KOG2083|consen 101 -ISRSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE-M----IDG---IGSVTVLILLA-INVAGVEWE 170 (643)
T ss_pred -EEecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH-H----hcc---hhHHHHHHHHH-hhhccchhH
Confidence 3455677776777777777777788899999999999998865321 1 111 11111111111 123577777
Q ss_pred chHHHHHHHHHHHHhheeeeechhh-h-----h-----cc-Cccccc-cccchhhhHHHHHHHhhhccceeeccccccCc
Q 014330 187 APLSIFADIVDLGAMGLVMVEDVMI-S-----M-----KQ-RPALKA-FGDFSVFSYGIGVAVYAFEGVGMILPLESETR 253 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~-~-----~-----~~-~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 253 (426)
++.+.+..+...+...-.++..+.. . . +. ..+..+ +.+-..++.-|++++=+..|.-.=..+..++|
T Consensus 171 ~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 171 AKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCC
Confidence 7777766665555433222211110 0 0 00 011111 11112566667777767766666667889999
Q ss_pred chhh-HHhHHHHHHHHHHHHHHHH
Q 014330 254 NKQR-FGRILGWCMAFISLLYGSF 276 (426)
Q Consensus 254 ~~~~-~~~~~~~~~~~~~~~Y~~~ 276 (426)
+|++ .++....+......+|..+
T Consensus 251 ~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 251 DPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred Cchhhcccchhhhhhhhhhhhhhh
Confidence 9966 8999999999999999654
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.62 E-value=0.57 Score=45.00 Aligned_cols=48 Identities=17% Similarity=-0.014 Sum_probs=39.8
Q ss_pred ccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhc
Q 014330 100 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI 147 (426)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (426)
..++..|..++-+||+..++..+...+.......+.....+.-++.++
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~ 87 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF 87 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456788888888999999999999999888888888877777777665
No 84
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.57 E-value=0.37 Score=46.70 Aligned_cols=309 Identities=14% Similarity=0.103 Sum_probs=142.4
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccc--
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFG-- 105 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~-- 105 (426)
+++++.|.+|+++..+.+.+|.|= .+..-|+.-.|. .++..+-+.+++..-+-+.-.....+.+++ .+..+|.
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~---~~~G~~~GG 89 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREK---DEDGEYRGG 89 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEE---CCCCCEeec
Confidence 445789999999999999999996 446677755544 366666666666554444333333333221 1122331
Q ss_pred --chhHHhhchh-hhHHHHHHHHHHHhhh--hHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccc
Q 014330 106 --DLGYTVCGSV-GRVAVDAMIVLAQAGF--CVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 180 (426)
Q Consensus 106 --~l~~~~~G~~-~~~~~~~~~~~~~~g~--~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 180 (426)
-..++.+|+| ...+..++. +..++. .......+.+.+++-++ .+++..- +.+.+...+...
T Consensus 90 P~yyi~~gl~~k~la~~fai~~-~~~~~~~~~~~Q~nsi~~~~~~~f~------------i~~~~~g-i~l~~l~~~vi~ 155 (416)
T PF01235_consen 90 PMYYIEKGLGSKWLAILFAIFL-IIAFGIGFNMVQANSIADALSSAFG------------IPPWITG-IILAILVALVIF 155 (416)
T ss_pred HHHHHHHHhccchHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhhcc------------ccHHHHH-HHHHHHHHHHHH
Confidence 2245555554 444444442 222222 23333333333333221 1222222 222222233446
Q ss_pred cccCccchHHHHHHHHHHHH-hhe---eeeec---hhhhh-----ccCccccccccchh--h----hHHHHHHHhhhc-c
Q 014330 181 PTLTHLAPLSIFADIVDLGA-MGL---VMVED---VMISM-----KQRPALKAFGDFSV--F----SYGIGVAVYAFE-G 241 (426)
Q Consensus 181 ~~l~~~~~~s~~~~~~~~~~-~~~---~~~~~---~~~~~-----~~~~~~~~~~~~~~--~----~~~~~~~~faf~-~ 241 (426)
..+|+++.++...+-.+... ++. ++... .++.. +........+...+ + -..+.--+||-. |
T Consensus 156 GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG 235 (416)
T PF01235_consen 156 GGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAG 235 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCC
Confidence 78888877775444433221 111 11111 11110 00000000101111 1 122333355543 5
Q ss_pred ceeeccccc--cCcchhhHHhHHHH-----HHHHHHHHHHHHhhhhhhccccccccc--eecccc---CChhhHHHHHHH
Q 014330 242 VGMILPLES--ETRNKQRFGRILGW-----CMAFISLLYGSFGALGYFAFGEETKDI--ITTNFG---AGLVSTLVNVGL 309 (426)
Q Consensus 242 ~~~~~~i~~--~m~~~~~~~~~~~~-----~~~~~~~~Y~~~~~~gy~~fG~~~~~~--i~~~~~---~~~~~~~~~i~~ 309 (426)
....|..+. +-++|.|=...-.. ++++|+..=+.+-..|.+.-+++.++. ....+. +++...+..+++
T Consensus 236 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l 315 (416)
T PF01235_consen 236 LGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIAL 315 (416)
T ss_pred CChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555555544 44557442222222 333343333333333322222222221 112222 145555666666
Q ss_pred HHHHHhhccccccchHHHHHHhhcCcchhhHHHHHHHHHHHHHhhc
Q 014330 310 CVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALL 355 (426)
Q Consensus 310 ~~~~~~s~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~ 355 (426)
.+--++|.--..+-...+++.++++++.....|.+.+....+-+..
T Consensus 316 ~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~i~~~~~G~~~ 361 (416)
T PF01235_consen 316 FLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILFIAMVFIGAVI 361 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehhhhhhhhhhcc
Confidence 6666677777777778888888855555555677666665555543
No 85
>PRK10484 putative transporter; Provisional
Probab=96.56 E-value=1.1 Score=45.62 Aligned_cols=90 Identities=12% Similarity=0.082 Sum_probs=54.8
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+++-..+.+..+.++++. ++.|-...+.|+.... ..............++..-.+| .+..|..|+-
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r-------~~~~T~~e~l 107 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK-------SGITTIPDFL 107 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh-------cCCccHHHHH
Confidence 46788888888888888666655 7788766677765311 1111111111223333322222 4678889999
Q ss_pred HHhhchhhhHHHHHHHHHH
Q 014330 109 YTVCGSVGRVAVDAMIVLA 127 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~ 127 (426)
++-||++.+.+......+.
T Consensus 108 ~~Ryg~~~~~~~~~~~~i~ 126 (523)
T PRK10484 108 EERYDKTTRRIVSILFLIG 126 (523)
T ss_pred HHhcCchhHHHHHHHHHHH
Confidence 9999999887776665544
No 86
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.36 E-value=0.75 Score=46.68 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=52.7
Q ss_pred hhccccccCccchHHHHHHHHHHHHhheeeeec-----hhhhhc--cCccccccccchhhhHHHHHHHhhhc-cceeecc
Q 014330 176 GLNSIPTLTHLAPLSIFADIVDLGAMGLVMVED-----VMISMK--QRPALKAFGDFSVFSYGIGVAVYAFE-GVGMILP 247 (426)
Q Consensus 176 pl~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~ 247 (426)
.+...|+++..+++.......-.....+..++. ..++.. ..|+.....+.+-...+++..+|+.+ |...+..
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 355668888777766554431111111112221 111110 12222222244456888999999987 5666666
Q ss_pred ccccCcchhhHHhHHHHHHHHHHHHHHHHhh
Q 014330 248 LESETRNKQRFGRILGWCMAFISLLYGSFGA 278 (426)
Q Consensus 248 i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~ 278 (426)
+...+|++++..|.............++.|+
T Consensus 272 ~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~ 302 (523)
T PF00209_consen 272 YGSYNKFKNNIFRDALIVAFINTLVSLLAGL 302 (523)
T ss_dssp HHTTS-TTS-SHHHHHHHHHHHHHHHHTTGT
T ss_pred EcCcCCCCccccccceEEEcCchhhhHhHHH
Confidence 6777777777766666555555555554443
No 87
>PRK15015 carbon starvation protein A; Provisional
Probab=96.34 E-value=0.06 Score=54.14 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhh
Q 014330 37 SKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVG 116 (426)
Q Consensus 37 ~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 116 (426)
+--+-+=..++-|+|-+-=|..-++.||.++.+.+++..++.---..+..-..+. +.+.++.+|++++..|+++
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~------R~~GrSig~ia~~~iG~~~ 159 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST------RRDGRSLGELVKEEMGPTA 159 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee------cCCCccHHHHHHHHhhHHH
Confidence 3455666789999999999998889999999999888777665444444433222 1466899999999999999
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 014330 117 RVAVDAMIVLAQAGFCVSYLIFIANTL 143 (426)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~y~~~~~~~l 143 (426)
+.+..+..++.+......+..++.+.+
T Consensus 160 ~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 160 GVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887777777766666665
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.60 E-value=2.5 Score=41.28 Aligned_cols=316 Identities=14% Similarity=0.194 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhhhhhhchhhHHHhh---hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhc
Q 014330 37 SKTFANVFISIVGAGVLGLPYTFKK---TGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCG 113 (426)
Q Consensus 37 ~~~~~~l~~~~iG~GiL~LP~a~~~---~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G 113 (426)
...-+.+...-.|+|=|-.|-...+ .-|..+.+..++.++.--.-+.+- ..+ .+ .++++++++..
T Consensus 6 l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia---~~~-------~~-~~~~~l~~~v~- 73 (427)
T PF05525_consen 6 LIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIA---VAK-------SG-GGIEDLASRVG- 73 (427)
T ss_pred hhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---Hhh-------cC-CCHHHHhcccC-
Confidence 3345667788999999999966543 446667777777666554433211 111 12 38888888874
Q ss_pred hhhhHHHHHHHHHHH-hh------hhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCcc
Q 014330 114 SVGRVAVDAMIVLAQ-AG------FCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHL 186 (426)
Q Consensus 114 ~~~~~~~~~~~~~~~-~g------~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~ 186 (426)
|+...+......+.. -. ..++|-.. ..++++. ++. ........+...+.+-++ .|.=|-+
T Consensus 74 ~~f~~if~~~i~l~IGP~~aiPRtaa~sfe~~----i~p~~~~---~~~-----~~~~ifs~iFF~i~~~l~-~~p~kiv 140 (427)
T PF05525_consen 74 PKFALIFTILIYLSIGPLFAIPRTAAVSFEMG----IAPFFPE---NSN-----ISLLIFSIIFFAITYLLS-LNPSKIV 140 (427)
T ss_pred cHHHHHHHHHHHHHHHhcccCcchhhhhHHHh----hhccCCc---ccc-----cchhhhhHHHHHHHHHHH-hchhhHH
Confidence 444444443333211 11 11122111 2222221 111 223333333333332222 2333333
Q ss_pred chHHHHHHHHHHHHhheeeeechhhhhcc--Ccc--c--ccc-ccc---hhhhHHHHHHHhhhccceeeccccccCcchh
Q 014330 187 APLSIFADIVDLGAMGLVMVEDVMISMKQ--RPA--L--KAF-GDF---SVFSYGIGVAVYAFEGVGMILPLESETRNKQ 256 (426)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~--~~~-~~~---~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~ 256 (426)
.++..+.+-..+....+.++.....+..+ +++ . .++ .+. -+-.+++.-+.|+-.....+- .+..+++|
T Consensus 141 d~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~--~~g~~~~k 218 (427)
T PF05525_consen 141 DRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIR--QKGYKDKK 218 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HhCCCCHH
Confidence 34443444444333333333333222111 111 0 111 001 123344444444433222221 22233344
Q ss_pred hH----HhHHHHHHHHHHHHHHHHhhhhhhcccc---ccc-cceeccccC----ChhhHHHHHHHHHHHHhhccccccch
Q 014330 257 RF----GRILGWCMAFISLLYGSFGALGYFAFGE---ETK-DIITTNFGA----GLVSTLVNVGLCVNLFLTFPLMMNPV 324 (426)
Q Consensus 257 ~~----~~~~~~~~~~~~~~Y~~~~~~gy~~fG~---~~~-~~i~~~~~~----~~~~~~~~i~~~~~~~~s~pl~~~~~ 324 (426)
+. .++-.++.....++|...+..|...-+. +.+ +.++.+..+ +.-..+..+...++++++..-.....
T Consensus 219 ~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~ 298 (427)
T PF05525_consen 219 EIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISAC 298 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4555555566667787777777665432 222 233333332 34456777778888888888888899
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhh
Q 014330 325 YEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIV 386 (426)
Q Consensus 325 ~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~ 386 (426)
.|.+++.+++-+++.|. .+....++++|.+ .++.++.+ +...+.++.|...-+.+
T Consensus 299 a~yf~~~~~kisY~~~v-~i~~i~S~~ian~--Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 299 AEYFSELFPKISYKVWV-IIFTIFSFIIANL--GLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHHhcccChHHHH-HHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 99999999865666553 3333444444433 35556654 45677888888876644
No 89
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.52 E-value=0.24 Score=48.85 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhc
Q 014330 34 STRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCG 113 (426)
Q Consensus 34 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G 113 (426)
.+.+..+-+=..++-|+|-+-=|..-+|.||.+|.+.+++.+++.---..+++-..+. +.+..+.+|++++.+|
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv------R~~G~Si~~ia~~~lG 125 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV------RHGGKSIGEIAGKYLG 125 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee------ccCCccHHHHHHHHhh
Confidence 4455566677788999999999999999999999999988877766555555443322 1466799999999999
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 014330 114 SVGRVAVDAMIVLAQAGFCVSYLIFIANTL 143 (426)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 143 (426)
++.+.+..+..++.+......+.....+.+
T Consensus 126 ~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 126 RTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887766555555544444444
No 90
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=94.80 E-value=5.8 Score=40.99 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=75.7
Q ss_pred CCChHHHHHHHHHHhhhhhhc-hhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHh
Q 014330 33 LSTRSKTFANVFISIVGAGVL-GLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTV 111 (426)
Q Consensus 33 ~~s~~~~~~~l~~~~iG~GiL-~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~ 111 (426)
-++..+.+.=.+..+.|.=.+ =|-+....+|...+.++++++++.+..|+.=+...+.+ +.. +...+|.-+.| .
T Consensus 114 mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATN--GVV--paGGsYfmISR-s 188 (1075)
T KOG2082|consen 114 MGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATN--GVV--PAGGSYFMISR-S 188 (1075)
T ss_pred cceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Ccc--cCCCeeEEEec-c
Confidence 355556666777888887653 37788999999999999999999888888766544432 222 34457776664 4
Q ss_pred hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhh-hcc
Q 014330 112 CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTH-MIN 148 (426)
Q Consensus 112 ~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~-~~~ 148 (426)
+|+..+-.+.++..+-.-.....|++-.-+.+-. ++|
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P 226 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFP 226 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHcc
Confidence 5676666667776666666666777777776544 444
No 91
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=92.71 E-value=10 Score=36.89 Aligned_cols=321 Identities=14% Similarity=0.060 Sum_probs=156.8
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhc-hhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccc--
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVL-GLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFG-- 105 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL-~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~-- 105 (426)
+.++..|.+|+.+.-..+.+|+|=. +..-|.+-.|.- ++..+=+.+++..-|.+.-.-...+.+++ .+..+|.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~k---d~~G~~~GG 133 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVK---DKDGEYRGG 133 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEe---CCCCCCcCC
Confidence 4568899999999999999999954 466666555433 55555444554444433332223332211 1122331
Q ss_pred --chhHHhhc-hhhhHHHHHHHHHHHh-hhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcccc
Q 014330 106 --DLGYTVCG-SVGRVAVDAMIVLAQA-GFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIP 181 (426)
Q Consensus 106 --~l~~~~~G-~~~~~~~~~~~~~~~~-g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 181 (426)
-.-++-+| |+...++.+...+..- ..+......+++.+++-++- +++.. -+.+.++..+....
T Consensus 134 P~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~------------~~~~~-gi~la~l~~~VI~G 200 (452)
T COG1115 134 PAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGI------------PPLVT-GIVLALLVALVIFG 200 (452)
T ss_pred hHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCC------------cHHHH-HHHHHHHHHHHHHc
Confidence 11233333 3445555533333322 24555555666666655542 12221 11222222334468
Q ss_pred ccCccchHHHHHHHHHHHH-hh---eeeeechh---hhh--------ccCcccccccc---chhhhHHHHHHHhhhc-cc
Q 014330 182 TLTHLAPLSIFADIVDLGA-MG---LVMVEDVM---ISM--------KQRPALKAFGD---FSVFSYGIGVAVYAFE-GV 242 (426)
Q Consensus 182 ~l~~~~~~s~~~~~~~~~~-~~---~~~~~~~~---~~~--------~~~~~~~~~~~---~~~~~~~~~~~~faf~-~~ 242 (426)
.+|+++.++...+-.+-.. ++ +++....+ .-. ..++..-.+.+ ...+.+.+.--+||-. |.
T Consensus 201 Gi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGm 280 (452)
T COG1115 201 GIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGM 280 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccC
Confidence 8888888886555433221 11 11111111 100 01111111100 1123444445566654 55
Q ss_pred eeeccccc--cCcchhhHHhHHHHHHHH-HHHHHHHHh----hhhhhcccccccc-----ceeccccCChhhHHHHHHHH
Q 014330 243 GMILPLES--ETRNKQRFGRILGWCMAF-ISLLYGSFG----ALGYFAFGEETKD-----IITTNFGAGLVSTLVNVGLC 310 (426)
Q Consensus 243 ~~~~~i~~--~m~~~~~~~~~~~~~~~~-~~~~Y~~~~----~~gy~~fG~~~~~-----~i~~~~~~~~~~~~~~i~~~ 310 (426)
...|..+. +-++|.|=.-+-..+..+ +.++....+ +.+.+..++..++ .-+.+.-+++...+..+.+.
T Consensus 281 Gsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~ 360 (452)
T COG1115 281 GSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALF 360 (452)
T ss_pred CcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 66665543 445564433333334444 222233222 2232222321111 11222223567777777777
Q ss_pred HHHHhhccccccchHHHHHHhhcCcchhhHHHHHHHHHHHHHhhc-cCCcchhhhhc
Q 014330 311 VNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALL-VPNFADFLSLV 366 (426)
Q Consensus 311 ~~~~~s~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~-~p~~~~i~~~~ 366 (426)
+-.++|+--..+-...+++-+..+|......|.+.+....+-+.. .|....+.+..
T Consensus 361 lFafTTIlg~yyyge~~~~fl~~~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~ 417 (452)
T COG1115 361 LFAFTTILGWYYYGEKNIEFLFGSKKAILLYRLIVLAMVFLGAVLSLDLVWNLADLF 417 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 778888888888888888888855544445677777776665554 24455555553
No 92
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.66 E-value=0.57 Score=45.64 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=68.6
Q ss_pred HHHHHhhhhhhc---hhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhH
Q 014330 42 NVFISIVGAGVL---GLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRV 118 (426)
Q Consensus 42 ~l~~~~iG~GiL---~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 118 (426)
.++++.-.-|.- ..-....++|.+.+..+.++-..+.+.....-... ++ ..++..-..+++++.+|+.|..
T Consensus 204 iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~----~~--~~~g~~lL~~i~~~~~G~~G~~ 277 (427)
T PF05525_consen 204 IIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF----PD--DINGAELLSQIANHLFGSAGQI 277 (427)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc----cC--CCCHHHHHHHHHHHHcChhHHH
Confidence 344445555544 23445556677666666655555554443211111 10 1233445577899999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhhhccc
Q 014330 119 AVDAMIVLAQAGFCVSYLIFIANTLTHMINN 149 (426)
Q Consensus 119 ~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (426)
+..+...+.|+.++++-....+|..++..+.
T Consensus 278 ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k 308 (427)
T PF05525_consen 278 LLGIIVFLACLTTAIGLISACAEYFSELFPK 308 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999883
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.63 E-value=0.77 Score=44.23 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=45.1
Q ss_pred ccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc
Q 014330 100 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINN 149 (426)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (426)
+..-..+++++.+|+.|..+..+...+.|++++++.....++.++++.+.
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44556788999999999999999999999999999999999999998763
No 94
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=90.21 E-value=2.3 Score=42.90 Aligned_cols=232 Identities=12% Similarity=0.011 Sum_probs=115.9
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.++..++...+.++.+.+|++ ++++|--..+.|.......+.. ......+ ..-..+ .+-+.+..+-.|.-+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~-----l~~~~~~--~~~f~P-vf~~~~v~~~~eYl~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNA-----LLSVLLL--GWIFIP-VFYRLGVTTMYEYLE 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHH-----HHHHHhh--heEEEE-EEEecCeeehhHHHH
Confidence 455556666677777777666 4889988877777632222111 1111111 111111 111134445566677
Q ss_pred HhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccchH
Q 014330 110 TVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPL 189 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~~ 189 (426)
+-||++.+....+...++.+.-...++-.=+-.+++... .+......+...++........++..-|.
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg------------~~~~l~~~~~~~ic~~YT~~GGlkaVi~T 183 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG------------INLYLIVVILGLICVFYTALGGLKAVIWT 183 (585)
T ss_pred HHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc------------cCceeehHHHHHHHHHHHHhcCeeEEEEh
Confidence 778888777777766665554333322222222222222 11112222222333334445566555544
Q ss_pred HHHHHHHHHHHhheeeeechhh----------h-----------hccCccccccccchhhhHHHHHHHhhhccceeeccc
Q 014330 190 SIFADIVDLGAMGLVMVEDVMI----------S-----------MKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPL 248 (426)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 248 (426)
-.+=...++.....+.+.+... . ...+|... ...|.-++.....-...++.+++...=
T Consensus 184 Dv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr-~t~W~~~~Gg~~~~l~~~~vnQ~~VQR 262 (585)
T KOG2349|consen 184 DVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVR-HTPWSLLFGGTIMWLSYYGVNQLIVQR 262 (585)
T ss_pred hHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCccc-ccchhHhcCCcHHHHHHHhhhHHHHhH
Confidence 4444444444444333322110 0 00111111 113444444455566678888888776
Q ss_pred cccCcchhhHHhHHHHHHHHHHHHHHHHhhhhhhc
Q 014330 249 ESETRNKQRFGRILGWCMAFISLLYGSFGALGYFA 283 (426)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~ 283 (426)
+-.+|+.|+.++++.......++...+....|...
T Consensus 263 ~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~ 297 (585)
T KOG2349|consen 263 YLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMII 297 (585)
T ss_pred HhccccHHHhhhhhhhhhhHHHHHHHhhcccceeE
Confidence 77778878888888777777666666655555443
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=89.34 E-value=3.8 Score=39.41 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=67.3
Q ss_pred HHHHhhhhhhchhh---HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHH
Q 014330 43 VFISIVGAGVLGLP---YTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVA 119 (426)
Q Consensus 43 l~~~~iG~GiL~LP---~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 119 (426)
++|+.=.-|+-.=. ......|++.++.+-++...+.+.. -..+...+.- .++.+=..+..++.||+.|..+
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~-~nG~~IL~~~s~~~fG~~G~~l 280 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLA-ANGGQILSAYSQHLFGSYGSIL 280 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccc-cchHHHHHHHHHHHhchhhHHH
Confidence 33444444544333 3344567776666666555555544 1222211111 1233445677899999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhhhccc
Q 014330 120 VDAMIVLAQAGFCVSYLIFIANTLTHMINN 149 (426)
Q Consensus 120 ~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (426)
...++.+.|..++++-....+|..++.++.
T Consensus 281 L~~iv~lACLTTaiGLi~a~aefF~~~~p~ 310 (431)
T COG1114 281 LGLIVFLACLTTAVGLIVACAEFFSKLVPK 310 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999984
No 96
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=87.05 E-value=31 Score=33.52 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=32.4
Q ss_pred ccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcc
Q 014330 100 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 148 (426)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (426)
..++..|++|+-++|+.++...+...+...++..+...-.+.-++.+++
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g 110 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH 110 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4467889999999988777666666555556655555555555555543
No 97
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=86.29 E-value=39 Score=33.89 Aligned_cols=120 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred cCCCCCCChHHHHHHHHHHhhhhhhchh----hHHHhhh---c--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014330 28 TKSKPLSTRSKTFANVFISIVGAGVLGL----PYTFKKT---G--------WIMGLLMLFSVAALTYYCMMLLVHTRRKL 92 (426)
Q Consensus 28 ~~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~a~~~~---G--------~~~g~i~l~~~~~~~~~t~~~l~~~~~~~ 92 (426)
+++|++.|.++-..-+.++-+|+|++.- |....+. | .-.+.....+=+.+..++.+.+.-..-..
T Consensus 69 ~d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay 148 (485)
T PF02028_consen 69 DDAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAY 148 (485)
T ss_dssp TSS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhe
Confidence 3677889999999999999999999876 2211111 1 11233333344444444444333221110
Q ss_pred hhhhCCCccccccchhHHhhchh----hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcc
Q 014330 93 ETIHGFSKINSFGDLGYTVCGSV----GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 148 (426)
Q Consensus 93 ~~~~~~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (426)
- .+++++..+..+..+-.+|++ .+.++|++..+...+....-+-.....+..-+.
T Consensus 149 ~-~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~ 207 (485)
T PF02028_consen 149 F-FYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLS 207 (485)
T ss_dssp H-HHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred e-eeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 011244456666666666653 467777776666665555545444444444333
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=81.63 E-value=5.7 Score=38.95 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=57.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHH
Q 014330 58 TFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLI 137 (426)
Q Consensus 58 a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~ 137 (426)
...++|.+.++.+.++-+.+.+.... .....++ ..++..=.....++.+|+.+..+..+.+++.|+.++++-..
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~----s~~~~~~--~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~ 300 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSD----SASLVDQ--SANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTC 300 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CcccccC--CCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555555554431 1111110 00122223455888999999999999999999999999999
Q ss_pred HHHhhhhhhcc
Q 014330 138 FIANTLTHMIN 148 (426)
Q Consensus 138 ~~~~~l~~~~~ 148 (426)
..++.+++.++
T Consensus 301 a~a~~f~~~~~ 311 (439)
T PRK15433 301 ACAEFFAQYVP 311 (439)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 99
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=81.61 E-value=58 Score=32.27 Aligned_cols=291 Identities=9% Similarity=0.005 Sum_probs=130.9
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGW--IMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGD 106 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~--~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~ 106 (426)
+.+++-|+++-+..=....++.+.--...+.-+.|+ ..+++.+ +.++.+.-....++.+.+..-.-++.-
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv--------~vG~~~~~~f~~lns~~G~~yhIsFpv 122 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITV--------WVGYLFTAIFLVLNSRPGSDYHISFPV 122 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHH--------HHHHHHHHHHHHHccCCCcccccceee
Confidence 456777888777666555555555555544445553 2233322 222222222222332222222235666
Q ss_pred hhHHhhchhh---hHHHHHHHHHHHhhhhHHHHHHHHhhh----hhhcccCCC-cccccccccchhHHHHHHh----HHH
Q 014330 107 LGYTVCGSVG---RVAVDAMIVLAQAGFCVSYLIFIANTL----THMINNSTT-SQTILGFLSPKALYIWGCF----PFQ 174 (426)
Q Consensus 107 l~~~~~G~~~---~~~~~~~~~~~~~g~~~~y~~~~~~~l----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~ 174 (426)
..|.-||-++ ..+..+...+..+|... =+.++.+ ..++++..+ ++..+. -+....-+++. ++.
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~--~~~tt~e~i~FfIFwv~s 197 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGK--PGTTTYEFIGFFIFWVAS 197 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCC--CCCchHHHHHHHHHHHHh
Confidence 6666676664 44555555555554432 2233333 333333221 111110 11112222222 222
Q ss_pred hhhc--cccccCccchHHHHHHHHHHHHhheeeeechh---hhhccCcccccc-ccchhhhHHHHHHHhhhc-cceeecc
Q 014330 175 LGLN--SIPTLTHLAPLSIFADIVDLGAMGLVMVEDVM---ISMKQRPALKAF-GDFSVFSYGIGVAVYAFE-GVGMILP 247 (426)
Q Consensus 175 ~pl~--~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~faf~-~~~~~~~ 247 (426)
+|.- -+.+++++-.++.+.+......+++....-.. +..++....... ..|. +..++...+=.|. ...|.|.
T Consensus 198 ~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa-~~~~i~~~~~~fstl~~N~pD 276 (572)
T KOG2466|consen 198 LPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWA-FVRSIMSCIANFSTLIVNAPD 276 (572)
T ss_pred hheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHH-HHHHHHHHHhccchhhccCch
Confidence 2322 23456665555555444443333333322211 111111111111 0222 2333322222222 4567777
Q ss_pred ccccCcchhhHHhHHHHHHHHHHHHHHHHhh----hhhhcccccccc--ceeccccCC-------hhhHHHHHHHHH-HH
Q 014330 248 LESETRNKQRFGRILGWCMAFISLLYGSFGA----LGYFAFGEETKD--IITTNFGAG-------LVSTLVNVGLCV-NL 313 (426)
Q Consensus 248 i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~----~gy~~fG~~~~~--~i~~~~~~~-------~~~~~~~i~~~~-~~ 313 (426)
..+--|+|.+....-.++..+.+.+..++|+ .++..||.+.-+ ++++++-+. .....+.+..++ ++
T Consensus 277 FsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql 356 (572)
T KOG2466|consen 277 FSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQL 356 (572)
T ss_pred hHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHHH
Confidence 8888888877776667777777777666664 456678876543 344444221 222233333333 33
Q ss_pred HhhccccccchHHHHHHhhc
Q 014330 314 FLTFPLMMNPVYEVVERRFC 333 (426)
Q Consensus 314 ~~s~pl~~~~~~~~l~~~~~ 333 (426)
-..+.-...++-+.+..++.
T Consensus 357 ~~NISan~vaagnDl~~L~P 376 (572)
T KOG2466|consen 357 GTNISANSVAAGNDLSALLP 376 (572)
T ss_pred hcchhccccccchhhHhhCc
Confidence 34444455566666666554
No 100
>PHA02764 hypothetical protein; Provisional
Probab=79.59 E-value=54 Score=30.64 Aligned_cols=92 Identities=11% Similarity=-0.034 Sum_probs=59.9
Q ss_pred CCCCChHHHHH-HHHHHhhhhhhchhhHHHhhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 31 KPLSTRSKTFA-NVFISIVGAGVLGLPYTFKKT--GWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 31 ~~~~s~~~~~~-~l~~~~iG~GiL~LP~a~~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
-|+.|.+++++ |+.+...|.++ +.|+-++.. |.. .+...++.++++...+....|...++| +...-...
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmP------rAGGdYVY 82 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFP------LNGGDYAY 82 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCC------CCCceEEE
Confidence 46788888888 55555555543 666644433 443 455667777777777777777777653 33333344
Q ss_pred hHHhhchhhhHHHHHHHHHHHhh
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAG 130 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g 130 (426)
.++++|++.+.+..+..++....
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVL 105 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHh
Confidence 77899999999988888775443
No 101
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=77.66 E-value=17 Score=36.34 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=42.1
Q ss_pred ccccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc
Q 014330 100 KINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINN 149 (426)
Q Consensus 100 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (426)
......++-....||++..+...+..+..+...++-++..+.....+..+
T Consensus 323 ~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 323 LGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred CCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 34566777788899999999999999999999999888888888777764
No 102
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=68.50 E-value=1.3e+02 Score=29.79 Aligned_cols=150 Identities=14% Similarity=0.085 Sum_probs=80.6
Q ss_pred hhhHHHHHHHhhhccceeeccccccCcchhhHH----hHHHHHHHHHHHHHHHHhhhhhhccc---cc-cccceecccc-
Q 014330 227 VFSYGIGVAVYAFEGVGMILPLESETRNKQRFG----RILGWCMAFISLLYGSFGALGYFAFG---EE-TKDIITTNFG- 297 (426)
Q Consensus 227 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~----~~~~~~~~~~~~~Y~~~~~~gy~~fG---~~-~~~~i~~~~~- 297 (426)
+-.++++...|+-.....+- .+..+++|+.. ++-.++.....++|...+..|...-+ +. ....++...-
T Consensus 195 ~TMDalaal~Fg~iii~~i~--~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~ 272 (439)
T PRK15433 195 LTMDTLGAMVFGIVIVNAAR--SRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQ 272 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHH
Confidence 34555666666654333332 23355555543 44445555566677777777654322 11 1112222211
Q ss_pred ---CChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcchhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhH
Q 014330 298 ---AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCIL 374 (426)
Q Consensus 298 ---~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~ 374 (426)
.++...+..+...+.++++-.-......+.+++.++ .+++.+ ..+...+++.+|.+ .++.++++ ....+
T Consensus 273 ~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-isY~~~-v~i~~l~S~~lSn~--G~~~II~~----s~PiL 344 (439)
T PRK15433 273 HTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LSYRTL-VFILGGFSMVVSNL--GLSQLIQI----SVPVL 344 (439)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHH-HHHHHHHHHHHHHh--HHHHHHHH----HHHHH
Confidence 134556667777788888888888888888888765 444433 23333344444332 24455553 34567
Q ss_pred HHHhhhHHHHhh
Q 014330 375 GFVLPALFHLIV 386 (426)
Q Consensus 375 ~~ilP~l~~~~~ 386 (426)
.++.|...-+.+
T Consensus 345 ~~iYP~~IvLil 356 (439)
T PRK15433 345 TAIYPPCIALVV 356 (439)
T ss_pred HHHhHHHHHHHH
Confidence 777787765533
No 103
>PLN00151 potassium transporter; Provisional
Probab=65.46 E-value=1.8e+02 Score=31.21 Aligned_cols=131 Identities=13% Similarity=0.195 Sum_probs=58.1
Q ss_pred hhHHHHHHHhhhccceeeccccccCcc-hhhHHhHHHHHHHHHHHHHHHHhhhhhhcccc-ccccceeccccCChhhHHH
Q 014330 228 FSYGIGVAVYAFEGVGMILPLESETRN-KQRFGRILGWCMAFISLLYGSFGALGYFAFGE-ETKDIITTNFGAGLVSTLV 305 (426)
Q Consensus 228 ~~~~~~~~~faf~~~~~~~~i~~~m~~-~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~-~~~~~i~~~~~~~~~~~~~ 305 (426)
-+.++|-++.+..|.+.+ +.||-+ .++--+.....+....++---+|-.+|+.=.+ +..+......|+...-...
T Consensus 346 gw~~LGgVvLciTGaEAL---fADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~ 422 (852)
T PLN00151 346 AWSALGGCVLCATGSEAM---FADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVF 422 (852)
T ss_pred eEEEecceeeeeccchhh---hcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHH
Confidence 445566677777777654 467766 22222222223333333322345555655322 2334445555644322222
Q ss_pred HHHHHHHHHhhccccccchHHHHHHhhcC-----------cc------hhhHHHHHHHHHHHHHhhccCCcchh
Q 014330 306 NVGLCVNLFLTFPLMMNPVYEVVERRFCD-----------YR------YCLWLRWAVVLGVSLVALLVPNFADF 362 (426)
Q Consensus 306 ~i~~~~~~~~s~pl~~~~~~~~l~~~~~~-----------~~------~~~~~~~~~~~~~~~va~~~p~~~~i 362 (426)
-++.+ +-+.+..-.+........+...- .+ +-..+.+++.+.++.+...+.+-+.+
T Consensus 423 vlAtl-AaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l 495 (852)
T PLN00151 423 LIANL-AALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDI 495 (852)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHH
Confidence 22222 22233333333333333333320 11 11225666777777766666654433
No 104
>PLN02680 carbon-monoxide oxygenase
Probab=64.44 E-value=95 Score=27.64 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=61.8
Q ss_pred cccccchhhhHHHHHHHhhhccceeeccccccCcchhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceeccc-c-
Q 014330 220 KAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNF-G- 297 (426)
Q Consensus 220 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~-~- 297 (426)
..+ +|..++...+.+.. .+...+. ++..+.+|+.+|.+....-...+....+|+.....+.++. .+ .|+ +
T Consensus 45 ~~F-n~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfySl 116 (232)
T PLN02680 45 LIF-NVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFYSL 116 (232)
T ss_pred ceE-echHHHHHHHHHHH--HHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-cccccH
Confidence 345 67777666665552 2222222 3445666778899999999999999999997766665433 22 233 2
Q ss_pred CChhhHHHHHHHHHHHHhhccccccch
Q 014330 298 AGLVSTLVNVGLCVNLFLTFPLMMNPV 324 (426)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~s~pl~~~~~ 324 (426)
.+|.....-+++.++....+....+|-
T Consensus 117 HSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 117 HSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 247777777777777777666666663
No 105
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=63.10 E-value=1.3e+02 Score=30.71 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHhhhhhhch-hhHH-HhhhcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 34 STRSKTFANVFISIVGAGVLG-LPYT-FKKTGW---IMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 34 ~s~~~~~~~l~~~~iG~GiL~-LP~a-~~~~G~---~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
.+-.+....+++..++.|=.= .||- +++.|+ ++-.+.+++.|.=-.|--..+.+..+. +...-+..++
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~-------g~~gvw~ri~ 154 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ-------GCIGVWRRIA 154 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc-------cchhHHHHhC
Confidence 455566677777777766433 5764 666665 344555555555444544444443332 3444444444
Q ss_pred HHhhchhhhHHHHHHHHHHHh
Q 014330 109 YTVCGSVGRVAVDAMIVLAQA 129 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~ 129 (426)
-.. |-.+.-++.++.+...+
T Consensus 155 P~l-~Gigy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 155 PAL-KGIGYAICLIAFFVGLY 174 (629)
T ss_pred HHh-cCCchhhhHHHHHHHHH
Confidence 433 33444444444444443
No 106
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=62.25 E-value=22 Score=30.55 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=48.8
Q ss_pred hhhhcchhhhhhHHHHhhhHHHHhhhccc----------CchhHHhhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 014330 362 FLSLVGSSVCCILGFVLPALFHLIVFKQE----------LGWNGIVMDAALLVFGVVIGISGTWSSLMEIVA 423 (426)
Q Consensus 362 i~~~~G~~~~~~~~~ilP~l~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~g~~~si~~~i~ 423 (426)
-.-+.|++.+.-+..++|+.+.+...++. .++.+.....+..++|++..+++...|...+.+
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45568889999999999999999998752 245566777888888888888888888877654
No 107
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=53.93 E-value=2.1e+02 Score=27.56 Aligned_cols=114 Identities=13% Similarity=0.005 Sum_probs=68.8
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.|+.+..--.+....+-+++. .++=|-+-.+.|.-.-.+. .+=--....+...+.+=.++..++ .+.-|..|+-+
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa-~iqvp~~~l~lgvlgkk~~~~ar~---~nAltI~D~l~ 113 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLA-MIQVPTVWLALGVLGKKFAILARE---YNALTINDLLF 113 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHH---hCCeeHHHHHH
Confidence 455555555555555555544 3555766656554331111 111112333444454444444333 46667777766
Q ss_pred Hh-hchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcc
Q 014330 110 TV-CGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN 148 (426)
Q Consensus 110 ~~-~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~ 148 (426)
+- =++...++..+...+...+...+..+-.+..++....
T Consensus 114 ~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g 153 (473)
T COG4145 114 ARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG 153 (473)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC
Confidence 54 4677889999999999999999988888888888775
No 108
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=51.63 E-value=2.3e+02 Score=28.65 Aligned_cols=115 Identities=15% Similarity=-0.017 Sum_probs=59.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchh----hHHHhh---hcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGL----PYTFKK---TGW--------IMGLLMLFSVAALTYYCMMLLVHTRRKLE 93 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~a~~~---~G~--------~~g~i~l~~~~~~~~~t~~~l~~~~~~~~ 93 (426)
+++++.|.++-+.-+.++-+|+|++-- |....+ .|. -.+...-.+=+.+.-++.+.+.-..-.+-
T Consensus 81 ~~kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~ 160 (504)
T PRK03356 81 DEKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYF 160 (504)
T ss_pred CCCCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999865 422221 121 11233333334444444444432211111
Q ss_pred hhhCCCcc-ccccchhHHhhchh-----hhHHHHHHHHHHHhhhhHHHHHHHHhhhh
Q 014330 94 TIHGFSKI-NSFGDLGYTVCGSV-----GRVAVDAMIVLAQAGFCVSYLIFIANTLT 144 (426)
Q Consensus 94 ~~~~~~~~-~~y~~l~~~~~G~~-----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~ 144 (426)
. +++++. ....+..+-.+|++ .+.++|++..+...+....-+-.....+.
T Consensus 161 ~-y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~ 216 (504)
T PRK03356 161 F-FVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVT 216 (504)
T ss_pred H-HhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 0 111233 25566666677732 45667766666555444444444333333
No 109
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=48.73 E-value=1.9e+02 Score=26.09 Aligned_cols=38 Identities=5% Similarity=0.213 Sum_probs=27.9
Q ss_pred ChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcc
Q 014330 299 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR 336 (426)
Q Consensus 299 ~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~ 336 (426)
+....-.++...+++..+.|...+=.-.-+..-+.+++
T Consensus 76 E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~E 113 (249)
T CHL00182 76 EYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKE 113 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 46777889999999999999998755555555554433
No 110
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=48.25 E-value=1.6e+02 Score=29.36 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=68.9
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccCC-hhhHHHHHHHHHHHHhhccccccchHHHHHH
Q 014330 252 TRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG-LVSTLVNVGLCVNLFLTFPLMMNPVYEVVER 330 (426)
Q Consensus 252 m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~-~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~ 330 (426)
-||+++.+++...+..+..++-.+.++..+..- ++++..+..+ .....+.--.-+......+...+-..+...+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 160 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFA-----EPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILR 160 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888877776665432 2232223211 1222222222223333333334444444444
Q ss_pred hhcCcchhhHHHHHHHHHHHHHhh-ccCC-cchhhhhcchhhhhhHHHHhhhHHHH
Q 014330 331 RFCDYRYCLWLRWAVVLGVSLVAL-LVPN-FADFLSLVGSSVCCILGFVLPALFHL 384 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~va~-~~p~-~~~i~~~~G~~~~~~~~~ilP~l~~~ 384 (426)
-..+.|.......+..++-.++.. ++-. ++. +++.|+-..+.+...+.+++.+
T Consensus 161 ~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~ 215 (455)
T COG0534 161 GLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLL 215 (455)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHH
Confidence 455555554444444444433322 1211 333 8999998888888888877654
No 111
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=47.66 E-value=2e+02 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=29.8
Q ss_pred CChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcchh
Q 014330 298 AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYC 338 (426)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~~ 338 (426)
.+....-.++...+....+.|...+=.-.-+..-+.+++++
T Consensus 54 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~Er~ 94 (215)
T TIGR00945 54 TEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHERR 94 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 35777888999999999999999875555555555444433
No 112
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=47.39 E-value=3e+02 Score=27.40 Aligned_cols=116 Identities=17% Similarity=0.066 Sum_probs=63.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchh----hHHHhhh---c---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGL----PYTFKKT---G---------WIMGLLMLFSVAALTYYCMMLLVHTRRKL 92 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~a~~~~---G---------~~~g~i~l~~~~~~~~~t~~~l~~~~~~~ 92 (426)
++|++.|.++-+.-+.++-+|+|++.- |....+. | .-.+...-.+=+.+.-++.+.+.-..-.+
T Consensus 32 d~kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY 111 (453)
T TIGR00842 32 DEKPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAY 111 (453)
T ss_pred CCCCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999765 3221111 1 11133334444455555555544332222
Q ss_pred hhhhCCCccccccchhHHhhchh----hhHHHHHHHHHHHhhhhHHHHHHHHhhhhh
Q 014330 93 ETIHGFSKINSFGDLGYTVCGSV----GRVAVDAMIVLAQAGFCVSYLIFIANTLTH 145 (426)
Q Consensus 93 ~~~~~~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~ 145 (426)
-.+|+.+..+..+..+-.+|++ .+.++|++..+...+....-+-.....+..
T Consensus 112 -~~~rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~ 167 (453)
T TIGR00842 112 -FHVRKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINA 167 (453)
T ss_pred -hheecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1122345456667676667654 456666666655444444434444444333
No 113
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=40.32 E-value=1.2e+02 Score=30.85 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=16.1
Q ss_pred hhhHHHHhhhHHHHhhhcccCchhHHh
Q 014330 371 CCILGFVLPALFHLIVFKQELGWNGIV 397 (426)
Q Consensus 371 ~~~~~~ilP~l~~~~~~~~~~~~~~~~ 397 (426)
...+..++|+++.++.+-+++++.+..
T Consensus 126 ~~~~l~~lp~~~~~~~~~~~~~~~~~~ 152 (522)
T PRK09598 126 YIVVLGVLPGYIIYKIPLKNSSKKAPF 152 (522)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHH
Confidence 334456789998777754444444444
No 114
>PRK01766 multidrug efflux protein; Reviewed
Probab=38.69 E-value=1.6e+02 Score=29.06 Aligned_cols=29 Identities=3% Similarity=-0.340 Sum_probs=17.6
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHHHhhhh
Q 014330 252 TRNKQRFGRILGWCMAFISLLYGSFGALG 280 (426)
Q Consensus 252 m~~~~~~~~~~~~~~~~~~~~Y~~~~~~g 280 (426)
-+|+++.++....+..+...+....+...
T Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (456)
T PRK01766 308 AGRTLDARQYAYIGLAVGLGMALLTAIFL 336 (456)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777766666655544433
No 115
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=36.91 E-value=1.1e+02 Score=27.90 Aligned_cols=61 Identities=11% Similarity=-0.031 Sum_probs=42.1
Q ss_pred cchhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccCC---hhhHHHHHHHHHHH
Q 014330 253 RNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG---LVSTLVNVGLCVNL 313 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~---~~~~~~~i~~~~~~ 313 (426)
.|-|++.+....+..+..+.|....++.-.+||.+.-+.+.+..|+. .+.....++..+..
T Consensus 131 g~~k~i~~~~~~~~~~~~~~~~~~~f~~~~~fG~~~v~~~~~~iP~~v~~GL~vaggmLPAvGf 194 (262)
T PRK15065 131 GNFRAIEWLHVSALLLQALRIAIPAALVALAVGTSAVQSMLNAIPEVLTGGLNIGGGMIVVVGY 194 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHH
Confidence 34566777777777777777777776666789999999999999853 34445555554433
No 116
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=36.51 E-value=3.1e+02 Score=24.50 Aligned_cols=40 Identities=10% Similarity=0.227 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcch
Q 014330 298 AGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRY 337 (426)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~ 337 (426)
.+....-.++.....+..+.|...+=.-.-+..-+.++++
T Consensus 62 ~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~Er 101 (237)
T TIGR01912 62 FAALELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHER 101 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3567788899999999999999987555555555544443
No 117
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=36.28 E-value=4.8e+02 Score=26.58 Aligned_cols=156 Identities=12% Similarity=0.121 Sum_probs=68.7
Q ss_pred hhhHHHHHHHhhhccceeeccccccCcch-hhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccc-eeccccCChhhHH
Q 014330 227 VFSYGIGVAVYAFEGVGMILPLESETRNK-QRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDI-ITTNFGAGLVSTL 304 (426)
Q Consensus 227 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~-i~~~~~~~~~~~~ 304 (426)
.-+..+|.++.+..|-+.+ +.||-+= ||--|.....+....++---.|-.+++.=.++..+| .....| ++....
T Consensus 202 ~~~~~LG~V~L~~TGaEAL---yADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P-~~~~~p 277 (534)
T PF02705_consen 202 IGFFVLGAVFLCVTGAEAL---YADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIP-EWLLWP 277 (534)
T ss_pred chhhhcchHHHHHhhHHHH---HhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhH-HHHHHH
Confidence 3566777888888887765 4688772 322222222222222222222444444433332233 333344 444433
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHhhcC-----------cc------hhhHHHHHHHHHHHHHhhccCCcchhhhhcc
Q 014330 305 VNVGLCVNLFLTFPLMMNPVYEVVERRFCD-----------YR------YCLWLRWAVVLGVSLVALLVPNFADFLSLVG 367 (426)
Q Consensus 305 ~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~-----------~~------~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G 367 (426)
.-+...++.+.+..-....+.....+..+- .+ +-....+.+.+.+..+-..+.+-+.+-+- =
T Consensus 278 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~A-Y 356 (534)
T PF02705_consen 278 MVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAA-Y 356 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHH-H
Confidence 333333333444444444444444443321 11 11124566666666666666553333322 1
Q ss_pred hhhhhhHHHHhhhHHHHhhh
Q 014330 368 SSVCCILGFVLPALFHLIVF 387 (426)
Q Consensus 368 ~~~~~~~~~ilP~l~~~~~~ 387 (426)
+++.+..+.+=-.++++..+
T Consensus 357 GiAVt~tM~iTT~L~~~v~~ 376 (534)
T PF02705_consen 357 GIAVTGTMLITTILLFLVMR 376 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 23333344443344444443
No 118
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=34.52 E-value=3.6e+02 Score=24.53 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=28.0
Q ss_pred ChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcc
Q 014330 299 GLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYR 336 (426)
Q Consensus 299 ~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~ 336 (426)
+....-.++...+.++.+.|...+=.-.-+..-+.+++
T Consensus 66 e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~E 103 (258)
T PRK10921 66 SPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHE 103 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 46777788899999999999998755555555554444
No 119
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=34.48 E-value=1.7e+02 Score=29.94 Aligned_cols=13 Identities=38% Similarity=0.278 Sum_probs=8.7
Q ss_pred HHhhhHHHHhhhc
Q 014330 376 FVLPALFHLIVFK 388 (426)
Q Consensus 376 ~ilP~l~~~~~~~ 388 (426)
-++|+++.++.+-
T Consensus 131 gvlP~~~~~~~~i 143 (545)
T PRK11598 131 GVLPALIACWIKI 143 (545)
T ss_pred HHHHHHHHHhhhh
Confidence 4589887766554
No 120
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=34.33 E-value=94 Score=20.36 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=22.4
Q ss_pred hhHHhHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 014330 256 QRFGRILGWCMAFISLLYGSFGALGYFAFGEETK 289 (426)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~ 289 (426)
..+.. +.+=..+++++|+++|+.-+..+.++..
T Consensus 20 NsF~f-Viik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 20 NSFWF-VIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 33444 4445568899999999988777755443
No 121
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=33.61 E-value=3.6e+02 Score=24.37 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=21.4
Q ss_pred ccCcchhhHHhHHHHHHHHHHHHHHHHhhhhhhccc
Q 014330 250 SETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFG 285 (426)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG 285 (426)
+.+++ .++++...+...+..+++...-..+...++
T Consensus 19 ~~l~~-P~lr~~~liPl~inllLf~~~l~~~~~~~~ 53 (251)
T PRK04949 19 KLILQ-PGLRRFVILPLLVNILLFGGAFWWLFTQLD 53 (251)
T ss_pred HHhcC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433 447778888888888777766444444444
No 122
>TIGR00909 2A0306 amino acid transporter.
Probab=32.87 E-value=4.7e+02 Score=25.45 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=40.4
Q ss_pred ccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc
Q 014330 102 NSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINN 149 (426)
Q Consensus 102 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (426)
....+..++..|+++..+..+...+..+++..+.....+..+..+..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345567778888999999999999999999999999999998877754
No 123
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=32.87 E-value=51 Score=20.87 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhccccc
Q 014330 259 GRILGWCMAFISLLYGSFGALGYFAFGEE 287 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~ 287 (426)
..+...++.+..++-.+.|..-|.+||+.
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34566677777777777777788889864
No 124
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=32.50 E-value=5.2e+02 Score=25.79 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=72.8
Q ss_pred cccccchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccc
Q 014330 101 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSI 180 (426)
Q Consensus 101 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 180 (426)
.....|++++.+.|+.++...+..=+...++.+...+-.+-.+.-+.. .+- | .-.++.++=.+.+++...
T Consensus 88 G~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~-IPL---~------~GVliTilD~f~fL~l~k 157 (503)
T KOG1291|consen 88 GKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN-IPL---W------AGVLITILDTFLFLFLDK 157 (503)
T ss_pred cHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC-CcH---H------HHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999888888888888877776666666655 111 1 112233322333333444
Q ss_pred cccCccchHHHHHHHHHHHHhheeeeechhhhhc-cC----ccccccccchhhhHHHHHHHhhhccce
Q 014330 181 PTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMK-QR----PALKAFGDFSVFSYGIGVAVYAFEGVG 243 (426)
Q Consensus 181 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~faf~~~~ 243 (426)
.+++.+..+-.+..+.+.+.+..-+...-+.... .. |....+ +...+.++++++=-.-.-|.
T Consensus 158 yGiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~-~~~~~~~avgilGA~IMPHn 224 (503)
T KOG1291|consen 158 YGIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGC-GSEGLYQAVGILGAVIMPHN 224 (503)
T ss_pred cchHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCC-CCcHHHHHHHHhceeeccch
Confidence 4666655555555555544455444443322111 01 111112 24467788877643333333
No 125
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=30.03 E-value=5.6e+02 Score=25.47 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=35.0
Q ss_pred ccccchhHHhhch-hhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhccc
Q 014330 102 NSFGDLGYTVCGS-VGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINN 149 (426)
Q Consensus 102 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~ 149 (426)
..+.++.+..+|. .+..+......+..+++..+++...+..+..+..+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777787 56666777777778888888888888877766654
No 126
>CHL00020 psbN photosystem II protein N
Probab=29.56 E-value=44 Score=20.83 Aligned_cols=27 Identities=26% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc
Q 014330 261 ILGWCMAFISLLYGSFGALGYFAFGEE 287 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~~~~gy~~fG~~ 287 (426)
+...++.+..++-.+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455666777777777777778888864
No 127
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=27.04 E-value=3.6e+02 Score=22.28 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=47.4
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceecccc--CChhhHHHHHHHHHHHHhhccccccch
Q 014330 255 KQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG--AGLVSTLVNVGLCVNLFLTFPLMMNPV 324 (426)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~--~~~~~~~~~i~~~~~~~~s~pl~~~~~ 324 (426)
+|+.+|.+....-...+...++|+.....+-++.. . .|+- .+|......+++.++-+..+....+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~--~-~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN--I-PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46678888888888888888888877777754422 1 2332 247777777778888877777777775
No 128
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=26.96 E-value=1e+02 Score=25.46 Aligned_cols=57 Identities=11% Similarity=-0.054 Sum_probs=36.4
Q ss_pred cchhhhhhHHHHhhhHHHHh-hhcccCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014330 366 VGSSVCCILGFVLPALFHLI-VFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIV 422 (426)
Q Consensus 366 ~G~~~~~~~~~ilP~l~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~si~~~i 422 (426)
.|+..+....|..|.+++.. ....+.-...+....+-+++|+..++.++..+..-..
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y 92 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQY 92 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777889999888764 1111111111256677888999999988887665443
No 129
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=26.64 E-value=4.7e+02 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=19.9
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHHHhhhhh
Q 014330 252 TRNKQRFGRILGWCMAFISLLYGSFGALGY 281 (426)
Q Consensus 252 m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy 281 (426)
-||++|.++....+......+-..++..-+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~ 339 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLL 339 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888777777777777665555443
No 130
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=26.54 E-value=69 Score=20.04 Aligned_cols=27 Identities=26% Similarity=0.205 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccc
Q 014330 261 ILGWCMAFISLLYGSFGALGYFAFGEE 287 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~~~~gy~~fG~~ 287 (426)
+...++.+..++-.+.|...|.+||+.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 345566667777777777788889854
No 131
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=26.19 E-value=2.8e+02 Score=22.78 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=13.7
Q ss_pred hhHHHHhhhHHHHhhhcccCchhH
Q 014330 372 CILGFVLPALFHLIVFKQELGWNG 395 (426)
Q Consensus 372 ~~~~~ilP~l~~~~~~~~~~~~~~ 395 (426)
..+.-++|+++.++.+-+++++.+
T Consensus 72 ~l~~~vlP~~~l~~~~i~~~~~~~ 95 (156)
T PF08019_consen 72 LLLLGVLPALLLWRVRIKKRSWKR 95 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHH
Confidence 344455788887766554444433
No 132
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.74 E-value=3.2e+02 Score=21.22 Aligned_cols=57 Identities=16% Similarity=0.018 Sum_probs=31.6
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTY-YCMMLLVHT 88 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~ 88 (426)
+..|.-.......-+....=++++|.+..-.+|.......++..+++. ++...+.+.
T Consensus 16 rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rl 73 (111)
T TIGR03750 16 RGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARL 73 (111)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445555555444444444456788876655678776555555444443 444445444
No 133
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.70 E-value=1.7e+02 Score=22.29 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=22.1
Q ss_pred HHHHhhhHHHHhhhc--ccCchhHHhhhHHHHHHHHHHHHHHHHH
Q 014330 374 LGFVLPALFHLIVFK--QELGWNGIVMDAALLVFGVVIGISGTWS 416 (426)
Q Consensus 374 ~~~ilP~l~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 416 (426)
..++.|.+.-..+-+ ++...-+..+.+.++++|++.+....|.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 455556665544422 2211112355566677777766666554
No 134
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=25.56 E-value=4.3e+02 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=15.3
Q ss_pred hhhcchhhhhhHHHHhhhHHH
Q 014330 363 LSLVGSSVCCILGFVLPALFH 383 (426)
Q Consensus 363 ~~~~G~~~~~~~~~ilP~l~~ 383 (426)
++..|+-..+.++..+-+++.
T Consensus 188 ~Gi~Gaa~At~is~~~~~~~~ 208 (453)
T PRK09575 188 WGLTGAAIATALAQLVVTVLG 208 (453)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 677788777777777776653
No 135
>COG3817 Predicted membrane protein [Function unknown]
Probab=25.24 E-value=5.1e+02 Score=23.42 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=18.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 014330 396 IVMDAALLVFGVVIGISGTWSSLMEIVA 423 (426)
Q Consensus 396 ~~~~~~~~~~g~~~~~~g~~~si~~~i~ 423 (426)
-+..=++..+|.+....|.-.++..+++
T Consensus 168 ~iLPQ~LaaLG~vFa~aGvG~~ia~L~~ 195 (313)
T COG3817 168 AILPQMLAALGAVFASAGVGDVIAHLIS 195 (313)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3444567778888887777777766653
No 136
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=23.77 E-value=3e+02 Score=24.68 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=41.2
Q ss_pred cchhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccCC---hhhHHHHHHHHHH
Q 014330 253 RNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG---LVSTLVNVGLCVN 312 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~---~~~~~~~i~~~~~ 312 (426)
.|-|+..|....+.....+.+...-.+-..+||++.-+++.+..|+. .+.....++..+.
T Consensus 131 gn~~~i~~~~~~~~~~~~~~~~v~~~fl~~~~G~~~v~~~~~~iP~~v~~gl~vagg~LPAvG 193 (238)
T PF03609_consen 131 GNYKKINRIHWIGPILFFLIYFVPPVFLAVYFGSDAVQALLNAIPEWVLNGLNVAGGMLPAVG 193 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34577888878887777777777755556789999989999999862 3444444444443
No 137
>PRK09950 putative transporter; Provisional
Probab=23.02 E-value=8e+02 Score=24.88 Aligned_cols=118 Identities=15% Similarity=0.048 Sum_probs=64.9
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchh----hHHHhh---hc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGVLGL----PYTFKK---TG--------WIMGLLMLFSVAALTYYCMMLLVHTRRKLET 94 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~GiL~L----P~a~~~---~G--------~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~ 94 (426)
+|++.|.++-+.-+.++-+|+|++.- |....+ .| .-.+...-.+=+.+.-++.+.+.-..-...-
T Consensus 80 ~kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~ 159 (506)
T PRK09950 80 GKPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHF 159 (506)
T ss_pred CCCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999765 322211 11 1113333344444555555544433222211
Q ss_pred hhCCCccccccchhHHhhchh----hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhc
Q 014330 95 IHGFSKINSFGDLGYTVCGSV----GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI 147 (426)
Q Consensus 95 ~~~~~~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~ 147 (426)
.+|+.+..+..+..+-.+|++ .+.++|++..+...+....-+-.....+..-+
T Consensus 160 ~~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl 216 (506)
T PRK09950 160 HVRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGL 216 (506)
T ss_pred HhhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 112244456777777777754 45677777666655555544544444444433
No 138
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=23.01 E-value=5.2e+02 Score=23.15 Aligned_cols=84 Identities=13% Similarity=0.185 Sum_probs=55.9
Q ss_pred hhhccceeecccccc-CcchhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceecccc--CChhhHHHHHHHHHHH
Q 014330 237 YAFEGVGMILPLESE-TRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFG--AGLVSTLVNVGLCVNL 313 (426)
Q Consensus 237 faf~~~~~~~~i~~~-m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~--~~~~~~~~~i~~~~~~ 313 (426)
|-|..=+.+. +|+- ....|+.+|.+....=.+.+.-.++|++....+-++.. ..|+- .+|.....-+++.++-
T Consensus 66 fI~l~GeAiL-~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfySLHSWlGl~~v~ly~~Q~ 141 (245)
T KOG1619|consen 66 FIYLQGEAIL-IYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYSLHSWLGLCVVILYSLQW 141 (245)
T ss_pred HHHhccceee-eeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceeeHHHHHHHHHHHHHHHHH
Confidence 3333333333 3444 44468899999999999999999999988888765554 23332 2577777777777777
Q ss_pred Hhhccccccch
Q 014330 314 FLTFPLMMNPV 324 (426)
Q Consensus 314 ~~s~pl~~~~~ 324 (426)
...+-..++|.
T Consensus 142 v~GF~tfl~pg 152 (245)
T KOG1619|consen 142 VFGFFTFLFPG 152 (245)
T ss_pred HHHHHHHhcCC
Confidence 66665555544
No 139
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=22.89 E-value=6.1e+02 Score=23.44 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=12.2
Q ss_pred cchhhHHhHHHHHHHHHHHHHHHHh
Q 014330 253 RNKQRFGRILGWCMAFISLLYGSFG 277 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~~~~ 277 (426)
+|+++.++....+......+-.+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (342)
T TIGR00797 63 GNYQRLGRQAQQSLLLALLLGLPVL 87 (342)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444433333
No 140
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=22.56 E-value=2.8e+02 Score=25.32 Aligned_cols=59 Identities=8% Similarity=-0.021 Sum_probs=39.7
Q ss_pred chhhHHhHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccCC---hhhHHHHHHHHHHH
Q 014330 254 NKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAG---LVSTLVNVGLCVNL 313 (426)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~---~~~~~~~i~~~~~~ 313 (426)
|-|+++|.-..+..+..+.|.+..+. ..+||++.-+.+.++.|+. .+.....++..+..
T Consensus 132 n~k~i~~~~~~~~~~~~~~~~i~~fl-a~~~G~~~v~~il~~iP~~v~~Gl~vaggmLPAvGf 193 (265)
T TIGR00822 132 NTAAISRLHVTAMLIQALRVAIPALI-VALVSQSAVQAMLKAIPEVVTHGLQIAGGIIVVVGY 193 (265)
T ss_pred CHHHhHHHHHHHHHHHHHHHHHHHHH-HHHcCHHHHHHHHHHCHHHHHHHHHHHHhhHHHHHH
Confidence 34667777777777777777777633 4578999999999999852 34455555554443
No 141
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.44 E-value=2.6e+02 Score=20.53 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHhhhccceeeccccccCcchhh-HHhHHHHHHHHHHHHHHHHhhhhhhcccc
Q 014330 232 IGVAVYAFEGVGMILPLESETRNKQR-FGRILGWCMAFISLLYGSFGALGYFAFGE 286 (426)
Q Consensus 232 ~~~~~faf~~~~~~~~i~~~m~~~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~ 286 (426)
.|+.+.+-.|.....++.+.-.+|.+ ..|++.+ ..+...+-+++|++.|-.||.
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSi-i~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSV-TCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 34444444454444566665445534 4444433 333444456677888888883
No 142
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=21.31 E-value=5.1e+02 Score=23.48 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=25.5
Q ss_pred hcchhhhhhHHHHhhhHHHHhhhcccCchhHHhhhHHHHHHHHHHHHHHHHHHH
Q 014330 365 LVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSL 418 (426)
Q Consensus 365 ~~G~~~~~~~~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~si 418 (426)
.+|.+... -..++|+.......|+- +-..+.-..+|.+....|.+-+.
T Consensus 186 ~vG~lLv~-allv~Paa~A~~~s~~~-----~~~~~~s~l~~~~~~~~G~~lS~ 233 (257)
T PF00950_consen 186 AVGVLLVF-ALLVIPAATARLLSRSF-----RRMIILSVLIGLLSSVLGLLLSY 233 (257)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 44567999987776542 12223334455555555555444
No 143
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=21.21 E-value=5.1e+02 Score=25.54 Aligned_cols=30 Identities=17% Similarity=0.011 Sum_probs=18.9
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHHHhhhhh
Q 014330 252 TRNKQRFGRILGWCMAFISLLYGSFGALGY 281 (426)
Q Consensus 252 m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy 281 (426)
-+|+++.++....+..+..++-.+..+.+.
T Consensus 79 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 108 (441)
T PRK10367 79 AKNPQALARALVQPLLLALGAGALIALLRT 108 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777766666555544433
No 144
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=20.79 E-value=5.5e+02 Score=25.43 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=11.3
Q ss_pred cchhhHHhHHHHHHHHHHHH
Q 014330 253 RNKQRFGRILGWCMAFISLL 272 (426)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~ 272 (426)
+|+++.++....+..+...+
T Consensus 306 ~~~~~~~~~~~~~l~~~~~~ 325 (464)
T PRK00187 306 GRLLEARRAGRVGIGFGAVV 325 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555444
No 145
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.39 E-value=4.4e+02 Score=20.82 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHH-HHHHHHHHHHHHHHH
Q 014330 32 PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWI-MGLLMLFSVAALTYY 80 (426)
Q Consensus 32 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~-~g~i~l~~~~~~~~~ 80 (426)
+..|.-.-......+.+-.-++++|.++. .||. .+....++..+++.+
T Consensus 19 rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~ 67 (121)
T PF11990_consen 19 RGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVF 67 (121)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555457789998886 6666 455554444444443
No 146
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=20.29 E-value=5.9e+02 Score=26.18 Aligned_cols=33 Identities=12% Similarity=0.004 Sum_probs=18.7
Q ss_pred CCcchhhhhcch--hhhhhHHHHhhhHHHHhhhcc
Q 014330 357 PNFADFLSLVGS--SVCCILGFVLPALFHLIVFKQ 389 (426)
Q Consensus 357 p~~~~i~~~~G~--~~~~~~~~ilP~l~~~~~~~~ 389 (426)
.|.....++++- +.-..+.-++|+++.++.+-+
T Consensus 110 Td~~Ea~~lls~~~~~~~l~~gvlP~~~i~~~~i~ 144 (558)
T PRK11560 110 TDIDLSKEVVGLHFILWLVAVSALPLILIWNNRCR 144 (558)
T ss_pred CCHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444444432 333344457899988877654
No 147
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=20.13 E-value=7.1e+02 Score=23.12 Aligned_cols=81 Identities=17% Similarity=0.046 Sum_probs=43.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccc-cchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHH
Q 014330 61 KTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSF-GDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFI 139 (426)
Q Consensus 61 ~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y-~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~ 139 (426)
+.||...++..+......+...++..+ ... ++-.+| +++..+..|+....+..+..........-.|.-..
T Consensus 32 ~d~Wi~~ll~~~~~l~~~~l~~~l~~~-~p~-------~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i 103 (320)
T PF03845_consen 32 GDAWISVLLGGLIGLLLALLIYYLLKR-FPG-------KTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFI 103 (320)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH-CCC-------CCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478875555555544444444444433 333 233344 34444566776666665555555555666666666
Q ss_pred Hhhhhhhccc
Q 014330 140 ANTLTHMINN 149 (426)
Q Consensus 140 ~~~l~~~~~~ 149 (426)
.+.+-+-.|.
T Consensus 104 ~~~~lp~TP~ 113 (320)
T PF03845_consen 104 KTYLLPETPI 113 (320)
T ss_pred HHHhcCcCCH
Confidence 6665555553
Done!