Query 014330
Match_columns 426
No_of_seqs 127 out of 1295
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 2.3E-18 7.9E-23 169.2 28.9 346 29-391 5-380 (445)
2 3gia_A Uncharacterized protein 99.7 6.1E-16 2.1E-20 151.8 26.1 342 29-390 3-369 (444)
3 4djk_A Probable glutamate/gamm 99.6 2.9E-13 9.8E-18 135.2 26.5 283 29-329 8-317 (511)
4 2jln_A MHP1; hydantoin, transp 98.9 2.1E-07 7.1E-12 92.0 23.8 324 29-372 22-372 (501)
5 3dh4_A Sodium/glucose cotransp 98.2 0.0025 8.4E-08 63.3 29.3 150 30-199 18-169 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.024 8.3E-07 56.9 26.4 148 31-198 48-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.5 0.059 2E-06 52.8 25.5 299 30-335 5-374 (519)
8 4b4a_A TATC, SEC-independent p 45.6 1.3E+02 0.0044 26.0 9.4 41 297-337 57-97 (249)
9 3tx3_A Uncharacterized protein 39.2 1.2E+02 0.004 26.2 8.1 33 252-285 24-56 (249)
10 4ain_A Glycine betaine transpo 37.5 92 0.0031 30.3 7.8 105 29-134 91-213 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.83 E-value=2.3e-18 Score=169.20 Aligned_cols=346 Identities=10% Similarity=-0.015 Sum_probs=221.8
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
+++++.+.++..+..+++++|+|++.+|...++.|.. +++..++.++........+.|..++. |+.....+..
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~------p~~Gg~y~~~ 77 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD------PSPGGSYAYA 77 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC------CCTTTHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC------CCCCCchhhH
Confidence 4568899999999999999999999999988888864 78888888999988888888887774 5555677778
Q ss_pred HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
++.+||+.+++..+..++.......++....++.++.+++...++ .....+.. ...+.......++.|...+
T Consensus 78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------WVLTITCV-VVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-------HHHHHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-------HHHHHHHH-HHHHHHHHHHHhchHHHHH
Confidence 999999999999999999888888888888888888776642211 11122222 2222222334567777777
Q ss_pred HHHHHHHHHHHHhheeeeechhhhh-cc-Cccccc--cccchhhhHHHHHHHhhhccceeeccccccCcch-hhHHhHHH
Q 014330 189 LSIFADIVDLGAMGLVMVEDVMISM-KQ-RPALKA--FGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK-QRFGRILG 263 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~~~~~~~ 263 (426)
++.+.....+...+.+......... .. .++..+ ..++.++..++....|+|.|.+......+|+||| |+.+|++.
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~ 229 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence 7766555444333322221111100 00 011111 1135578899999999999999999999999998 55999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccccc----e---eccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-
Q 014330 264 WCMAFISLLYGSFGALGYFAFGEETKDI----I---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY- 335 (426)
Q Consensus 264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~~~----i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~- 335 (426)
.+..++.++|.+.........+.+...+ . ..+...++...+..+...+..+.+.-...+...+.+...-+++
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 309 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999888777665443211 1 1111123444555666666666665555555666555444321
Q ss_pred ---------c--hhhHHHHHHHHHHHHHhhc--c----CCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccC
Q 014330 336 ---------R--YCLWLRWAVVLGVSLVALL--V----PNFADFLSLVGSSVCCILGFVLPALFHLIVFKQEL 391 (426)
Q Consensus 336 ---------~--~~~~~~~~~~~~~~~va~~--~----p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~ 391 (426)
| .+.........++.++... . +.++.+.++.+ ....+.|.++++.+++.+|++.
T Consensus 310 lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 310 FPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp SCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred CcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 1 1111111111222222222 2 23556666533 4557889999999999987654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.74 E-value=6.1e-16 Score=151.84 Aligned_cols=342 Identities=11% Similarity=0.037 Sum_probs=213.4
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhH-HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPY-TFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+++++.+.++..+..+++++|+|++.+|. +....|. ..++..++.+++...+...+.|..++. |+.....+.
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~------P~~Gg~y~~ 75 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKI------VSNAGPIAF 75 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTC------CCTTTHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC------CCCCcHHHh
Confidence 45789999999999999999999999874 4555666 688888898999988888888887764 455566678
Q ss_pred hHHhhchh--hhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCc
Q 014330 108 GYTVCGSV--GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTH 185 (426)
Q Consensus 108 ~~~~~G~~--~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 185 (426)
.++.+|++ +++ ..+..++........+....++.+..+++....+ | ... ...+...+.+-....++.|.
T Consensus 76 ~~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~-----~~~-~~~~~~~~~~~~in~~g~~~ 146 (444)
T 3gia_A 76 IHKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPINT--F-----NIA-ITEIGIVAFFTALNFFGSKA 146 (444)
T ss_dssp HHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH--H-----HHH-HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch--H-----HHH-HHHHHHHHHHHHHHHHhHHH
Confidence 89999997 343 3566677766677778888888888877642211 0 011 11122222222344567777
Q ss_pred cchHHHHHHHHHHHHhheeeeechhh--hhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhh-HHhHH
Q 014330 186 LAPLSIFADIVDLGAMGLVMVEDVMI--SMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQR-FGRIL 262 (426)
Q Consensus 186 ~~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~-~~~~~ 262 (426)
..+++.......+.....+++..... .....+...+. ++.++..++....|+|.|++......+|+|||+| .+|++
T Consensus 147 ~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai 225 (444)
T 3gia_A 147 VGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPS-AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAI 225 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHH-HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCc-chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHH
Confidence 77777666554444333332222111 11111111111 4456888888999999999999999999999965 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccc----c-ee---ccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC
Q 014330 263 GWCMAFISLLYGSFGALGYFAFGEETKD----I-IT---TNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD 334 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~~~~gy~~fG~~~~~----~-i~---~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~ 334 (426)
..+..++.++|.+..+......+.+... . .. .....++...+..+...+..+.+.-...+...+.+...-++
T Consensus 226 ~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 226 FISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999887766655433211 1 10 01111223334555555555555555555555555444322
Q ss_pred c-----------chhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc
Q 014330 335 Y-----------RYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE 390 (426)
Q Consensus 335 ~-----------~~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~ 390 (426)
+ +.+.........++.++.. ..+++.+.++. ..+..+.|.++++.+++.+|++
T Consensus 306 g~lP~~f~~~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 306 GELPEFFERKVWFKSTEGLYITSALGVLFAL-LFNMEGVASIT--SAVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp SSCCSSCCTTSCCSCTHHHHHHHHHHHHHHH-HSCHHHHHHHH--HHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHhCCCCCCCcHHHHHHHHHHHHHHH-HcCHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcC
Confidence 1 1111111111222222222 34677777763 3455788888998888887754
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.60 E-value=2.9e-13 Score=135.23 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=166.0
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HhhhhhCCCcccccc
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALT-YYCMMLLVHTRR--KLETIHGFSKINSFG 105 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~--~~~~~~~~~~~~~y~ 105 (426)
+.+++.+.++.++..++.++| +.++|. .+..|.. .++..++.+++. ......+.|... + +| .....
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~------~P-~GG~y 76 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDG------WE-EGGVF 76 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSC------C----CHH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccccc------CC-CCChh
Confidence 457889999999999999986 667775 4566654 444444444433 236666777666 5 35 56677
Q ss_pred chhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhc--ccCCCcccccccccchhHHHHHHhHHHhhhcccccc
Q 014330 106 DLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMI--NNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTL 183 (426)
Q Consensus 106 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 183 (426)
...++.+|++.+++..+..++.......++....++.+..++ ++...+ .| ....+..++ .+.+.....+..
T Consensus 77 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~-----~~~~~~~~~-~~~~~~in~~g~ 149 (511)
T 4djk_A 77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNED-PI-----TKTIAALII-LWALALTQFGGT 149 (511)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSC-SS-----HHHHHHHHH-HHHHHHHHHTCS
T ss_pred hhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC-cH-----HHHHHHHHH-HHHHHHHHHhCh
Confidence 788999999999999999999888877777777777776653 222111 11 112222222 222223345677
Q ss_pred CccchHHHHHHHHH-HH---Hhheeee-echh-hh--h-ccCccccccccchhhhHHHHHHHhhhccceeeccccccCcc
Q 014330 184 THLAPLSIFADIVD-LG---AMGLVMV-EDVM-IS--M-KQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRN 254 (426)
Q Consensus 184 ~~~~~~s~~~~~~~-~~---~~~~~~~-~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 254 (426)
|...+++.+..... +. .+++... .... +. . .+.....+.........++...+|+|.|.+......+|+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 77777665543321 11 1111100 0000 00 0 01111111101123456678889999999999999999999
Q ss_pred hhh-HHhHHHHHHHHHHHHHHHHhhhhhhccccccccc----------eecccc--CChhhHHHHHHHHHHHHhhccccc
Q 014330 255 KQR-FGRILGWCMAFISLLYGSFGALGYFAFGEETKDI----------ITTNFG--AGLVSTLVNVGLCVNLFLTFPLMM 321 (426)
Q Consensus 255 ~~~-~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~----------i~~~~~--~~~~~~~~~i~~~~~~~~s~pl~~ 321 (426)
|+| .+|++..+..++.++|++..+......+++.... ...+.+ ..+...+..+...+..+.+.-...
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 855 9999999999999999999887777665443211 112222 234555666666666666654444
Q ss_pred cchHHHHH
Q 014330 322 NPVYEVVE 329 (426)
Q Consensus 322 ~~~~~~l~ 329 (426)
....+.+.
T Consensus 310 ~~~sR~l~ 317 (511)
T 4djk_A 310 VGPSRGMY 317 (511)
T ss_dssp THHHHHTC
T ss_pred HHHHHHHH
Confidence 54444443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.93 E-value=2.1e-07 Score=91.97 Aligned_cols=324 Identities=13% Similarity=-0.015 Sum_probs=172.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhh-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKK-TGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~-~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
+++|+.+.++-+..-++..++.+.+.+...+.. .++..+++.+++..++...-+.+......+ ...++.++
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~--------~Gl~~~v~ 93 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR--------WGINFTVA 93 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH--------HCCCHHHH
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh--------cCCChhhh
Confidence 344667888877777777777777766654433 344556666666666655555555454444 22458899
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
.|..||+++..+..++..+..+|....-....++.+...+...... .+......+..++.++.. ....+.+.
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-------~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-------TNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------chHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 9999999999999999999999988888888888887776421110 112222333333333333 34555565
Q ss_pred hHHHHHHHHHHHHhheeeeechhh------hhccCccccccccchhhhHHHHHH-HhhhccceeeccccccCcchhh---
Q 014330 188 PLSIFADIVDLGAMGLVMVEDVMI------SMKQRPALKAFGDFSVFSYGIGVA-VYAFEGVGMILPLESETRNKQR--- 257 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i~~~m~~~~~--- 257 (426)
+++.+.....+..++...+..... .....++. . ....+..++... .+.-....+.+.+.+++|++++
T Consensus 166 ~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~--~-~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~ 242 (501)
T 2jln_A 166 WMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGE--N-PGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASR 242 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCS--S-CCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCc--c-chHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccc
Confidence 555555444433333222211111 01111110 1 122344444331 2222333567788899988776
Q ss_pred ---------HHhHHHHHHHHHHHHHHHHhhhhhhccccccccceecc-ccCC-hhhHHHH-HHHHHHHHhhccc-cccch
Q 014330 258 ---------FGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTN-FGAG-LVSTLVN-VGLCVNLFLTFPL-MMNPV 324 (426)
Q Consensus 258 ---------~~~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~-~~~~-~~~~~~~-i~~~~~~~~s~pl-~~~~~ 324 (426)
..+....+..+...+..++|.......+...+..+... ++.. .+..+.. +...+..+++--. ..++.
T Consensus 243 ~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~ 322 (501)
T 2jln_A 243 EGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSP 322 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHH
T ss_pred cchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45555566666666666666543333222212222222 2222 2234444 5555555555543 67888
Q ss_pred HHHHHHhhcCc-chhhHHHHHHHHHHHHHhhcc--CCcchhhhhcchhhhh
Q 014330 325 YEVVERRFCDY-RYCLWLRWAVVLGVSLVALLV--PNFADFLSLVGSSVCC 372 (426)
Q Consensus 325 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~va~~~--p~~~~i~~~~G~~~~~ 372 (426)
...+.+.+.+. +++. ...+..++.++++... +.+...+++.|.....
T Consensus 323 ~~~l~~~~~~~i~~~~-~~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P 372 (501)
T 2jln_A 323 AYTLCSTFPRVFTFKT-GVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGP 372 (501)
T ss_dssp HHHHHHHSTTTCCHHH-HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHhCccccchhH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888887553 3222 2233333333333332 2244455554444433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.18 E-value=0.0025 Score=63.29 Aligned_cols=150 Identities=11% Similarity=-0.023 Sum_probs=84.4
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330 30 SKPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG 108 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~ 108 (426)
..|+.+++...+.+..+.+++.. +++|-...+.|+......... ++.....+..+....++ .+..|..|.-
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~-------~~~~T~~e~l 89 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE-------KGIYTIPEFV 89 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH-------TTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH-------cCCccHHHHH
Confidence 46788899888888888777654 789987778887532211111 11111222222222233 5778999999
Q ss_pred HHhhchhhhHHHHHHHHH-HHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccc
Q 014330 109 YTVCGSVGRVAVDAMIVL-AQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLA 187 (426)
Q Consensus 109 ~~~~G~~~~~~~~~~~~~-~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~ 187 (426)
++-||++.+.+..+...+ +.+....+-+...+..++.+++ .+....+++..+++........++...
T Consensus 90 ~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G------------i~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 90 EKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG------------IPLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------------CCHHHHHHHHHHHHHHTTC------CC
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 999999998887766543 2333333334444555555543 223444444555555677778888877
Q ss_pred hHHHHHHHHHHH
Q 014330 188 PLSIFADIVDLG 199 (426)
Q Consensus 188 ~~s~~~~~~~~~ 199 (426)
+...+=.++++.
T Consensus 158 ~TD~iQ~~im~~ 169 (530)
T 3dh4_A 158 WTDVIQVFFLVL 169 (530)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777555554443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.67 E-value=0.024 Score=56.95 Aligned_cols=148 Identities=10% Similarity=-0.023 Sum_probs=78.8
Q ss_pred CCCCChHHHHHHHHHHhhhhhh-chhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchhH
Q 014330 31 KPLSTRSKTFANVFISIVGAGV-LGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGY 109 (426)
Q Consensus 31 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~~ 109 (426)
.|+.+++.....+..+.+++.. ++.|-...+.|+........ .++........+..-.++ .+..|..|.-+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r-------~~~~T~~e~l~ 119 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE-------KGIYTIPEFVE 119 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH-------TTCCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh-------CCCCCcHHHHH
Confidence 4677888888888777666555 68887777778643221111 111111112222222233 57789999999
Q ss_pred HhhchhhhHHHHHHHHH-HHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330 110 TVCGSVGRVAVDAMIVL-AQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP 188 (426)
Q Consensus 110 ~~~G~~~~~~~~~~~~~-~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~ 188 (426)
+-||++.+.+..+...+ +.+......+...+..++.+++ .+....+++...++........++...+
T Consensus 120 ~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G------------i~~~~~i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 120 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG------------IPLMYSILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHTTC---CCH
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------ccHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 99999988877765443 3333333334445556666554 1223333334444444666777777766
Q ss_pred HHHHHHHHHH
Q 014330 189 LSIFADIVDL 198 (426)
Q Consensus 189 ~s~~~~~~~~ 198 (426)
...+=.+.++
T Consensus 188 TD~iQ~iiml 197 (593)
T 2xq2_A 188 TDVIQVFFLV 197 (593)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655444443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.50 E-value=0.059 Score=52.76 Aligned_cols=299 Identities=14% Similarity=0.056 Sum_probs=135.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhhhcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccc
Q 014330 30 SKPLSTRSKTFANVFISIVGAG-VLGLPYTFKKTGW----IMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSF 104 (426)
Q Consensus 30 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~G~----~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y 104 (426)
+++=.|..+-+...+++.+|-| +-=.||...+.|- ++-++.+++.++=..+.-..+.+-..+ ..+++....+
T Consensus 5 R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~---~~r~~~i~a~ 81 (519)
T 2a65_A 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA---QGHGTTPAIF 81 (519)
T ss_dssp CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TTCCSHHHHH
T ss_pred cccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchh---ccCCCHHHHH
Confidence 3455788899999999999999 5678999888874 334444444444333333333332111 1111222334
Q ss_pred cchhHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccC--------C--C--c-------cccccccc----
Q 014330 105 GDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNS--------T--T--S-------QTILGFLS---- 161 (426)
Q Consensus 105 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~--------~--~--~-------~~~~~~~~---- 161 (426)
.++++ ++....+.....+..+....-|.++.+-.+..++... . . + ++|.....
T Consensus 82 ~~l~~----~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (519)
T 2a65_A 82 YLLWR----NRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKG 157 (519)
T ss_dssp HHHSC----SHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHhcC----CcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCC
Confidence 33332 2111222222233333333334444443332222110 0 0 0 11110000
Q ss_pred -------chhHHHHH-HhHHHhhhcccccc-CccchHHHHHHHHHHHHhheeeeechhh---------hhc--cCccccc
Q 014330 162 -------PKALYIWG-CFPFQLGLNSIPTL-THLAPLSIFADIVDLGAMGLVMVEDVMI---------SMK--QRPALKA 221 (426)
Q Consensus 162 -------~~~~~~~~-~~~~~~pl~~~~~l-~~~~~~s~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~ 221 (426)
+.....+. ...+..-++..|.+ |.+.+.+.+.+......+++..++...- +.. -.|+...
T Consensus 158 ~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~ 237 (519)
T 2a65_A 158 DEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEK 237 (519)
T ss_dssp SSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTS
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHH
Confidence 01111111 11122224556777 5566666655554444444443333221 110 1122222
Q ss_pred cccchhhhHHHHHHHhhhc-cceeeccccccCcchhhHHhHHHHHHHHHHHHHHH-----Hhhhhhhccccc-cc-----
Q 014330 222 FGDFSVFSYGIGVAVYAFE-GVGMILPLESETRNKQRFGRILGWCMAFISLLYGS-----FGALGYFAFGEE-TK----- 289 (426)
Q Consensus 222 ~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~~~Y~~-----~~~~gy~~fG~~-~~----- 289 (426)
..+.+-...+.+...|+.+ |...+..+...+|++++..|........-...-++ ++..+|..+|.+ .+
T Consensus 238 L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~ 317 (519)
T 2a65_A 238 LKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKA 317 (519)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcC
Confidence 2244457888999999988 55555666666776666555544444443333332 223445445544 21
Q ss_pred c----------ceeccccCC-hhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc
Q 014330 290 D----------IITTNFGAG-LVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY 335 (426)
Q Consensus 290 ~----------~i~~~~~~~-~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~ 335 (426)
+ ....++|-. ....+..+++.+.-++|.-...-+....+++.++.+
T Consensus 318 G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~~ 374 (519)
T 2a65_A 318 GAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLS 374 (519)
T ss_dssp CSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCCc
Confidence 1 122333322 223333334444444555445555556666655433
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=45.58 E-value=1.3e+02 Score=25.96 Aligned_cols=41 Identities=12% Similarity=0.316 Sum_probs=28.7
Q ss_pred cCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCcch
Q 014330 297 GAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRY 337 (426)
Q Consensus 297 ~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~~~ 337 (426)
+.+....-.++.....++.+.|...+=.-.-+..-+.++++
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Er 97 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEK 97 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHH
Confidence 34577788899999999999999987554444444444333
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=39.23 E-value=1.2e+02 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.000 Sum_probs=20.7
Q ss_pred CcchhhHHhHHHHHHHHHHHHHHHHhhhhhhccc
Q 014330 252 TRNKQRFGRILGWCMAFISLLYGSFGALGYFAFG 285 (426)
Q Consensus 252 m~~~~~~~~~~~~~~~~~~~~Y~~~~~~gy~~fG 285 (426)
+.+| ++++.+.....+..++|..........++
T Consensus 24 i~~p-~lr~~vl~Pllinl~L~~~~~~~~~~~~~ 56 (249)
T 3tx3_A 24 IRTK-GLRRYVVVPILTNLILFSLAFTWLYGEVD 56 (249)
T ss_dssp HTST-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 67788888888888876655444333333
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=37.53 E-value=92 Score=30.29 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchh----hHHHhh--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014330 29 KSKPLSTRSKTFANVFISIVGAGVLGL----PYTFKK--------TGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIH 96 (426)
Q Consensus 29 ~~~~~~s~~~~~~~l~~~~iG~GiL~L----P~a~~~--------~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~ 96 (426)
+++++.|.++-++-+.++-+|.|++.- |....+ .-.-.+.-...+=+.+.-++.+.+.-....+- .+
T Consensus 91 d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~-~y 169 (539)
T 4ain_A 91 DEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYS-TF 169 (539)
T ss_dssp TCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCC-CC
T ss_pred CCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-Hh
Confidence 567889999999999999999999854 322111 01122444445555555555554443222111 11
Q ss_pred CCCccccccchhHHhhchh-----hhHHHHHHHHHH-HhhhhHH
Q 014330 97 GFSKINSFGDLGYTVCGSV-----GRVAVDAMIVLA-QAGFCVS 134 (426)
Q Consensus 97 ~~~~~~~y~~l~~~~~G~~-----~~~~~~~~~~~~-~~g~~~~ 134 (426)
|+....+..+..+-.+|++ .+.++|++-.+. .+|...+
T Consensus 170 rk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatS 213 (539)
T 4ain_A 170 RVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACS 213 (539)
T ss_dssp CTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhh
Confidence 2233344555544444443 245666665554 4444443
Done!