Query 014330
Match_columns 426
No_of_seqs 127 out of 1295
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 09:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 97.2 0.091 6.6E-06 49.3 25.9 104 33-143 4-112 (509)
2 d1mgta1 a.4.2.1 (A:89-169) O6- 7.9 1.4E+02 0.01 18.9 2.9 21 96-117 16-36 (81)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 2.8E+02 0.02 22.7 5.5 46 35-80 378-425 (447)
4 d3cx5d2 f.23.11.1 (D:261-307) 6.4 1.7E+02 0.013 16.4 2.4 7 251-257 2-8 (47)
5 d1ppjd2 f.23.11.1 (D:196-241) 5.9 1.9E+02 0.014 16.1 2.4 23 251-273 2-25 (46)
6 d1nekd_ f.21.2.2 (D:) Succinat 5.1 1.6E+02 0.011 19.8 2.0 25 255-279 84-108 (113)
7 d2dara1 g.39.1.3 (A:53-84) PDZ 3.6 1.5E+02 0.011 15.0 0.6 9 1-9 12-20 (32)
8 d1q90g_ f.23.26.1 (G:) PetG su 3.5 3.1E+02 0.023 13.3 2.7 18 62-79 7-24 (30)
9 d1sfea1 a.4.2.1 (A:93-176) Ada 3.5 2.5E+02 0.018 17.7 1.9 28 97-124 16-43 (84)
10 d1qnta1 a.4.2.1 (A:92-176) O6- 3.4 2.5E+02 0.018 17.7 1.9 28 97-124 16-43 (85)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=97.21 E-value=0.091 Score=49.34 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHHhhhhhhc-hhhHHHhhhcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330 33 LSTRSKTFANVFISIVGAGVL-GLPYTFKKTGWI----MGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL 107 (426)
Q Consensus 33 ~~s~~~~~~~l~~~~iG~GiL-~LP~a~~~~G~~----~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l 107 (426)
=.|..+-+...++..+|.|=+ -.||...+.|-. +-.+.+++.+.=..+--..+.+..++ +....+..+
T Consensus 4 W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-------g~i~~~~~i 76 (509)
T d2a65a1 4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-------QGHGTTPAI 76 (509)
T ss_dssp CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------TTCCSHHHH
T ss_pred CCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CcccHHHHH
Confidence 367888999999999999854 489987776533 23333333333333333333333222 455666666
Q ss_pred hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 014330 108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTL 143 (426)
Q Consensus 108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l 143 (426)
.....+++....+.....+..+..++-|.+..+-.+
T Consensus 77 ~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l 112 (509)
T d2a65a1 77 FYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTL 112 (509)
T ss_dssp HHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555444344444444444445555555555443
No 2
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=7.87 E-value=1.4e+02 Score=18.94 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=15.2
Q ss_pred hCCCccccccchhHHhhchhhh
Q 014330 96 HGFSKINSFGDLGYTVCGSVGR 117 (426)
Q Consensus 96 ~~~~~~~~y~~l~~~~~G~~~~ 117 (426)
.++.+..||.|+++.+ |+..+
T Consensus 16 IP~G~v~TYg~iA~~~-g~~~R 36 (81)
T d1mgta1 16 VKRGSVITYGDLAKAL-NTSPR 36 (81)
T ss_dssp SCTTCCEEHHHHHHHT-TSCHH
T ss_pred CCCCCeEeHHHHHHHc-CCcHH
Confidence 4467888999999876 55444
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=2.8e+02 Score=22.72 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHhhhh--hhchhhHHHhhhcHHHHHHHHHHHHHHHHH
Q 014330 35 TRSKTFANVFISIVGA--GVLGLPYTFKKTGWIMGLLMLFSVAALTYY 80 (426)
Q Consensus 35 s~~~~~~~l~~~~iG~--GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~ 80 (426)
+...++.+.++...|. |-+..++.....|+-.....+....++...
T Consensus 378 g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 425 (447)
T d1pw4a_ 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 3334444444444332 222334556667876555544444444433
No 4
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.44 E-value=1.7e+02 Score=16.38 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=3.4
Q ss_pred cCcchhh
Q 014330 251 ETRNKQR 257 (426)
Q Consensus 251 ~m~~~~~ 257 (426)
|+.+.++
T Consensus 2 EhDeRK~ 8 (47)
T d3cx5d2 2 EHDERKR 8 (47)
T ss_dssp THHHHHH
T ss_pred chhHHHH
Confidence 4455444
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.91 E-value=1.9e+02 Score=16.07 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=10.3
Q ss_pred cCcchhhHH-hHHHHHHHHHHHHH
Q 014330 251 ETRNKQRFG-RILGWCMAFISLLY 273 (426)
Q Consensus 251 ~m~~~~~~~-~~~~~~~~~~~~~Y 273 (426)
||++.+++. +++....++..+.|
T Consensus 2 e~d~RK~mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 2 EHDHRKRMGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 566655542 44333333333333
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=5.05 E-value=1.6e+02 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=12.6
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHhhh
Q 014330 255 KQRFGRILGWCMAFISLLYGSFGAL 279 (426)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~Y~~~~~~ 279 (426)
+++.++............+...++.
T Consensus 84 ~~~~r~~~~~~~~~~~~~~~~~~i~ 108 (113)
T d1nekd_ 84 PLALRLMLQLVIVVALVVYVIYGFV 108 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555543
No 7
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.58 E-value=1.5e+02 Score=14.98 Aligned_cols=9 Identities=56% Similarity=1.025 Sum_probs=0.0
Q ss_pred CCCccccCC
Q 014330 1 MGFDEEAGS 9 (426)
Q Consensus 1 ~~~~~~~~~ 9 (426)
|||-||.+.
T Consensus 12 ~gFVEE~g~ 20 (32)
T d2dara1 12 IGFVEEKGA 20 (32)
T ss_dssp SCBEESSSC
T ss_pred cceeeecCc
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.49 E-value=3.1e+02 Score=13.26 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHH
Q 014330 62 TGWIMGLLMLFSVAALTY 79 (426)
Q Consensus 62 ~G~~~g~i~l~~~~~~~~ 79 (426)
.|++.|.+-.-+.+.+..
T Consensus 7 ~GivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHH
No 9
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=3.46 E-value=2.5e+02 Score=17.72 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCccccccchhHHhhchhhhHHHHHHH
Q 014330 97 GFSKINSFGDLGYTVCGSVGRVAVDAMI 124 (426)
Q Consensus 97 ~~~~~~~y~~l~~~~~G~~~~~~~~~~~ 124 (426)
++.+..||.|+++.+--++....+.-..
T Consensus 16 p~G~v~TYg~iA~~~g~~~a~RaVg~a~ 43 (84)
T d1sfea1 16 PCGETVSYQQLANAIGKPKAVRAVASAC 43 (84)
T ss_dssp CTTCCEEHHHHHHHTTCTTCHHHHHHHH
T ss_pred CCCCeeeHHHHHHHhCCcccHHHHHHHH
No 10
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=2.5e+02 Score=17.74 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCccccccchhHHhhchhhhHHHHHHH
Q 014330 97 GFSKINSFGDLGYTVCGSVGRVAVDAMI 124 (426)
Q Consensus 97 ~~~~~~~y~~l~~~~~G~~~~~~~~~~~ 124 (426)
++.+..||.|+++.+.-++....+.-..
T Consensus 16 P~G~v~TYg~iA~~~g~p~aaRaVg~a~ 43 (85)
T d1qnta1 16 KFGEVISYQQLAALAGNPKAARAVGGAM 43 (85)
T ss_dssp CTTCCEEHHHHHHHTTCTTCHHHHHHHH
T ss_pred CCCCcccHHHHHHHcCCcchHHHHHHHH
Done!