Your job contains 1 sequence.
>014331
MSKSVSVYQCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEVAMMRPIFC
GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR
LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII
SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR
SPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGR
NSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP
YERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSR
SPPAED
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014331
(426 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2131864 - symbol:RS40 "arginine/serine-rich sp... 698 1.3e-94 2
TAIR|locus:2173088 - symbol:RS41 "arginine/serine-rich sp... 697 1.4e-93 2
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 589 1.1e-66 2
TAIR|locus:2039975 - symbol:RS31a "arginine/serine-rich s... 546 6.1e-62 2
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 153 6.7e-18 2
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 153 6.7e-18 2
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 170 1.5e-16 3
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 170 1.5e-16 3
DICTYBASE|DDB_G0275409 - symbol:DDB_G0275409 "RNA-binding... 219 5.9e-16 2
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 153 1.1e-15 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 117 3.2e-14 2
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 117 1.1e-13 2
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 117 2.2e-13 2
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 117 2.8e-13 2
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 117 2.8e-13 2
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 137 3.8e-13 2
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 146 5.9e-13 2
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 138 2.5e-12 2
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 138 2.5e-12 2
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 189 4.5e-12 1
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 141 8.7e-12 2
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 141 1.1e-11 2
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 141 1.1e-11 2
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 141 1.1e-11 2
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 141 1.1e-11 2
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 141 1.1e-11 2
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 141 1.3e-11 2
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 141 1.3e-11 2
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 142 1.6e-11 2
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 140 1.7e-11 2
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ... 111 2.2e-11 3
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 146 2.4e-11 2
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 178 3.3e-11 1
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd... 125 3.7e-11 2
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor... 125 3.7e-11 2
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 126 4.1e-11 2
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 126 4.1e-11 2
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 177 4.4e-11 1
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 176 5.4e-11 1
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 145 5.7e-11 2
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 176 6.9e-11 1
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 175 7.5e-11 1
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 178 8.2e-11 1
ZFIN|ZDB-GENE-030131-3019 - symbol:rbm4.2 "RNA binding mo... 117 9.5e-11 3
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 174 9.8e-11 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 138 1.0e-10 2
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 136 1.0e-10 2
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 136 1.0e-10 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 177 1.0e-10 1
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 135 1.0e-10 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 177 1.1e-10 1
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 145 1.4e-10 2
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 133 1.6e-10 2
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 172 1.6e-10 1
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 119 1.7e-10 2
ZFIN|ZDB-GENE-040426-1938 - symbol:rbm4.3 "RNA binding mo... 114 2.2e-10 3
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 170 2.9e-10 1
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 158 3.2e-10 1
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 130 3.3e-10 3
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 132 5.0e-10 2
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 127 5.3e-10 2
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 130 7.3e-10 2
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 156 8.0e-10 1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 120 9.2e-10 2
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 119 9.2e-10 2
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 107 1.0e-09 2
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 155 1.1e-09 1
UNIPROTKB|F1S4R5 - symbol:SRSF7 "Uncharacterized protein"... 125 1.2e-09 2
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 155 1.3e-09 1
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 154 1.8e-09 1
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 101 2.0e-09 2
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 101 2.0e-09 2
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl... 119 2.0e-09 2
FB|FBgn0030479 - symbol:Rbp1-like "Rbp1-like" species:722... 121 2.2e-09 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 165 2.4e-09 1
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 153 2.5e-09 1
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 119 3.3e-09 2
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl... 103 5.2e-09 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 136 5.3e-09 2
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 136 5.3e-09 2
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 136 5.3e-09 2
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 136 5.4e-09 2
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 120 5.5e-09 2
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 120 5.6e-09 2
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 120 5.6e-09 2
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 120 5.7e-09 2
POMBASE|SPAC16.02c - symbol:srp2 "mRNA export factor Srp2... 111 6.6e-09 2
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 120 6.6e-09 2
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 120 6.6e-09 2
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 120 6.6e-09 2
ZFIN|ZDB-GENE-071005-2 - symbol:srsf3b "serine/arginine-r... 111 6.7e-09 2
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 120 6.8e-09 2
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 120 6.8e-09 2
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 120 6.8e-09 2
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 120 6.8e-09 2
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 120 6.8e-09 2
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 120 6.9e-09 2
ZFIN|ZDB-GENE-040426-1798 - symbol:zgc:77155 "zgc:77155" ... 109 7.7e-09 2
DICTYBASE|DDB_G0284245 - symbol:DDB_G0284245 "CCHC-type z... 131 7.8e-09 2
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 137 8.8e-09 3
WARNING: Descriptions of 176 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 698 (250.8 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 132/178 (74%), Positives = 150/178 (84%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EF
Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFE 174
GRKGRRLRVEWTK E ++ RPSKTLFVINFD +TRTRDLE+HFE
Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSGGGSRRSS-SSMRPSKTLFVINFDADNTRTRDLEKHFE 119
Query: 175 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 232
PYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NGH
Sbjct: 120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGH 177
Score = 263 (97.6 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 68/162 (41%), Positives = 93/162 (57%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRRDR-GSPENGHG-- 337
R RSPSPY+R+RGSPDYGR +S + Y+KER + +GR S SPY++ R GSPE G
Sbjct: 190 RRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRR 249
Query: 338 SSPSPYRKGK---P-----SPNNGR---GPSRSPYERERP-SPENXXXXXXXXXXXXXXX 385
+ SP R+ + P SPNN R P+ SP+++E P +
Sbjct: 250 GNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSRSS 309
Query: 386 XDNGRVPSPNSMPEPRDSPG-YDGADSPINERYRSRSPPAED 426
+NG+V SP S+ RDS G YDGA+SP+ + RSPPA++
Sbjct: 310 PENGQVESPGSIGR-RDSDGGYDGAESPMQKSRSPRSPPADE 350
Score = 189 (71.6 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
Identities = 56/149 (37%), Positives = 70/149 (46%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSR-SPYRRDRGSPENGHG 337
D R SP RR SP+ R S SPYK+ER + +GRG S + YR++R SP+ G
Sbjct: 170 DDARGNGHSPERRRDRSPERRRRSP-SPYKRERGSPDYGRGASPVAAYRKERTSPDYGRR 228
Query: 338 SSPSPYRKGKP-SPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNS 396
SPSPY+K + SP GR R SP R+ SPN
Sbjct: 229 RSPSPYKKSRRGSPEYGRD------RRGNDSPRRRERVASPTKYSRSPNNKRERM-SPNH 281
Query: 397 MPEPRDSP--GYDGADSPINERYRSRSPP 423
P ++SP G +SPI R RSRS P
Sbjct: 282 SPFKKESPRNGVGEVESPIERRERSRSSP 310
Score = 166 (63.5 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 47/99 (47%), Positives = 59/99 (59%)
Query: 279 DYGRVRSPSPYRRDR-GSPDYGRN--SSRSPYKKERAAIGHGRGPSRSPY-RRDRGSPEN 334
DYGR RSPSPY++ R GSP+YGR+ + SP ++ER A SRSP +R+R SP +
Sbjct: 224 DYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVA--SPTKYSRSPNNKRERMSPNH 281
Query: 335 GHGSSPSPYRKGKPSPNNGRGPSRSPYERE---RPSPEN 370
SP++K SP NG G SP ER R SPEN
Sbjct: 282 ------SPFKK--ESPRNGVGEVESPIERRERSRSSPEN 312
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 697 (250.4 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 131/178 (73%), Positives = 150/178 (84%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+
Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFE 174
GR GRRLRVEWTK++ + RPSKTLFVINFD +TRTRDLERHFE
Sbjct: 61 GRTGRRLRVEWTKNDRGGAGRSGGSRRSS--SGLRPSKTLFVINFDAQNTRTRDLERHFE 118
Query: 175 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGH 232
PYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG+
Sbjct: 119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGY 176
Score = 254 (94.5 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
Identities = 70/159 (44%), Positives = 83/159 (52%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNS-SRSPYKKERAAIGHGRGPSRSPYRRDR-GSPENGH 336
DYGR SP ++R+R SPDYGR S SPYK+ R + + R RR+R SPENG
Sbjct: 204 DYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDY----KRDDRRRERVASPENGA 259
Query: 337 GSSPSPYRKGK-----PSPNNGRGPSRSP--YE--RERPSPENXXXXXXXXXXXXXXXXD 387
+ SP RKG+ P P R SRSP YE RE SP +
Sbjct: 260 VRNRSP-RKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPE 318
Query: 388 NGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 426
NG+V SP + E GYDGADSPI E SRSPPAE+
Sbjct: 319 NGQVESPGQIMEVEAGRGYDGADSPIRESSPSRSPPAEE 357
Score = 189 (71.6 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 47/96 (48%), Positives = 57/96 (59%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHG--- 337
R RSPSPYRR+RGSPDYGR +S +K+ER + +GRG S SPY+R R SP+
Sbjct: 189 RRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRR 248
Query: 338 ----SSPSPYRKGKPSPNNGRGPSRSP--YERERPS 367
+SP SP GRG SRSP YE+ R S
Sbjct: 249 RERVASPENGAVRNRSPRKGRGESRSPPPYEKRRES 284
Score = 121 (47.7 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 43/127 (33%), Positives = 57/127 (44%)
Query: 309 KERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
K+ + G+G P R RRDR SP+ SPSPYR+ + SP+ GRG S ++RER SP
Sbjct: 167 KDDDSRGNGYSPER---RRDR-SPDRRR-RSPSPYRRERGSPDYGRGASPVAHKRERTSP 221
Query: 369 E-----NXXXXXXXXXXXXXXXXDNGR---VPSPNSMP----EPRDSPGYDGADSPINER 416
+ D+ R V SP + PR G + P +R
Sbjct: 222 DYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKR 281
Query: 417 YRSRSPP 423
SRSPP
Sbjct: 282 RESRSPP 288
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 589 (212.4 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 113/179 (63%), Positives = 138/179 (77%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+AF+Y +DERDAEDAIR LD F
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFE 174
G + RRL VEW K E +N +P+KTLFVINFDP T+ D+E+HFE
Sbjct: 61 GYEKRRLSVEWAKGERGRPRGDAKAP-----SNLKPTKTLFVINFDPIRTKEHDIEKHFE 115
Query: 175 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR--RNG 231
PYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT SK+ DRV+SVEYA++DDD+R RNG
Sbjct: 116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNG 174
Score = 107 (42.7 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 34/88 (38%), Positives = 40/88 (45%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-----RDRGSPENGHGS 338
RS SP R R SPDYGR S ++ G R P Y+ R SP+ G S
Sbjct: 180 RSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSPEYDRYKGPAAYERRRSPDYGRRS 239
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERP 366
S Y + + SP R SRSP R RP
Sbjct: 240 SD--YGRQR-SPGYDRYRSRSPVPRGRP 264
Score = 93 (37.8 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 33/77 (42%), Positives = 39/77 (50%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSP-YKKER--AAIGHGRGPS----RSPYRRDRGS 331
DYGR PSP + R SPDYGR +RSP Y + + AA R P S Y R R S
Sbjct: 193 DYGR--RPSPGQGRRPSPDYGR--ARSPEYDRYKGPAAYERRRSPDYGRRSSDYGRQR-S 247
Query: 332 PENGHGSSPSPYRKGKP 348
P S SP +G+P
Sbjct: 248 PGYDRYRSRSPVPRGRP 264
Score = 90 (36.7 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 35/99 (35%), Positives = 42/99 (42%)
Query: 328 DRGSPENGHGSSP----SPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXX 383
D NG G SP SP + +PSP+ GR PS P + RPSP+
Sbjct: 167 DERDDRNG-GRSPRRSLSPVYRRRPSPDYGRRPS--PGQGRRPSPDYGRARSPEYDRYKG 223
Query: 384 XXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSP 422
R SP+ R S Y SP +RYRSRSP
Sbjct: 224 PAAYERR-RSPDY---GRRSSDYGRQRSPGYDRYRSRSP 258
Score = 87 (35.7 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 310 ERAAIGHGRGPSRS--PYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP-YER 363
ER GR P RS P R R SP+ +G PSP + +PSP+ GR +RSP Y+R
Sbjct: 168 ERDDRNGGRSPRRSLSPVYRRRPSPD--YGRRPSPGQGRRPSPDYGR--ARSPEYDR 220
Score = 83 (34.3 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 38/92 (41%), Positives = 44/92 (47%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
RSP RR SP Y R S P R + G GR PS Y R R SPE P+ Y
Sbjct: 176 RSP---RRSL-SPVYRRRPS--PDYGRRPSPGQGRRPSPD-YGRAR-SPEYDRYKGPAAY 227
Query: 344 RKGKPSPNNGR-----GPSRSP-YERERP-SP 368
+ + SP+ GR G RSP Y+R R SP
Sbjct: 228 ERRR-SPDYGRRSSDYGRQRSPGYDRYRSRSP 258
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 546 (197.3 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 104/176 (59%), Positives = 131/176 (74%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
MR ++ GNF+YD R SDLERLF ++G+V RVDMKSG+AF+Y +DERDAEDAIR D T F
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFE 174
G R+L VEW K +N RP+KTLFVINFDP TR RD+ERHFE
Sbjct: 61 GYGRRKLSVEWAKD---FQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFE 117
Query: 175 PYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN 230
PYGK+++VR+RRNFAFVQ+ QEDAT+ALD+T+ SKL D+V+SVEYA+R+ +R +
Sbjct: 118 PYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGERED 173
Score = 105 (42.0 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA-AIGHGRGPSRSPYRRDRG 330
+Y R + P+PY R R SPDYGR SS Y + RA + G+ R SRSP +R RG
Sbjct: 203 EYDRYKGPAPYER-RKSPDYGRRSS--DYGRARARSPGYDR--SRSPIQRARG 250
Score = 102 (41.0 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 37/84 (44%), Positives = 45/84 (53%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RSPSP R R SPDY R RSP + +R +GP+ PY R R SP+ G SS
Sbjct: 180 RRRSPSPVYRRRPSPDYTRR--RSP-EYDRY-----KGPA--PYER-RKSPDYGRRSSDY 228
Query: 342 PYRKGKPSPNNGRGPSRSPYERER 365
+ + SP R SRSP +R R
Sbjct: 229 GRARAR-SPGYDR--SRSPIQRAR 249
Score = 71 (30.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 32/76 (42%), Positives = 40/76 (52%)
Query: 308 KKERAAIGHGRGPSRSP-YRR----D---RGSPENGHGSSPSPY--RK----GKPSPNNG 353
+++R A G R S SP YRR D R SPE P+PY RK G+ S + G
Sbjct: 171 REDRYA-GSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYG 229
Query: 354 RGPSRSP-YERERPSP 368
R +RSP Y+R R SP
Sbjct: 230 RARARSPGYDRSR-SP 244
Score = 70 (29.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
Identities = 35/99 (35%), Positives = 46/99 (46%)
Query: 327 RDRGSPENGH-GS----SPSPYRKGKPSPNNGRGPSRSP-YERER-PSPENXXXXXXXXX 379
R+ G E+ + GS SPSP + +PSP+ R RSP Y+R + P+P
Sbjct: 166 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTR--RRSPEYDRYKGPAPYERRKSP---- 219
Query: 380 XXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYR 418
D GR S R SPGYD + SPI +R R
Sbjct: 220 -------DYGRRSSDYGRARAR-SPGYDRSRSPI-QRAR 249
Score = 62 (26.9 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 317 GRGPSRSPYRRDRGSPENGHGSSPSP-Y-RKGKPSPNNGRGPSRSPYERERPSPE 369
G R R R SP + PSP Y R+ P + +GP+ PYER R SP+
Sbjct: 169 GEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPA--PYER-RKSPD 220
Score = 50 (22.7 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 393 SPNSMPEPRDSPGYDGADSPINERYRSRSP 422
SP+ + R SP Y SP +RY+ +P
Sbjct: 183 SPSPVYRRRPSPDYTRRRSPEYDRYKGPAP 212
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 153 (58.9 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y+AR+ D+ER + YGK++ + MK GFAF+ +D RDAEDA LD
Sbjct: 1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTM 60
Query: 115 GRKGRRLRVEWTK 127
RL VE +
Sbjct: 61 EGSSMRLVVEMAR 73
Score = 106 (42.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNMSKLTDRVIS 217
PY+ R RD+ER + YGKI ++ ++ FAFV +E EDA LD M + R++
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLV- 68
Query: 218 VEYA 221
VE A
Sbjct: 69 VEMA 72
Score = 90 (36.7 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 42/130 (32%), Positives = 50/130 (38%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS SP RR R +P R+ SR K+ R + SRSP R R E+ SPS
Sbjct: 88 RRRSRSPRRRSR-TPPRRRSRSRDR-KRSRRSRSRSSSRSRSPVRESRRRSES---RSPS 142
Query: 342 PYRKGKPSPNNGRGP----SRSPYERERPSPENXXXXXXXXXXXXXXXXDNG-----RVP 392
P R K + R P RS P P+N D R P
Sbjct: 143 PKRDLKREASRSRSPLPAKDRSRTRSGSP-PKNGGDRKRSVSRGRSHSRDGSNRSVSRSP 201
Query: 393 SPNSMPEPRD 402
SP S P+D
Sbjct: 202 SPGS---PKD 208
Score = 67 (28.6 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 293 RGSP-DYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGHGSSPSPYRKGKP-S 349
RG P R+ SRSP ++ R+ R P R R RDR S S R P
Sbjct: 73 RGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSS--RSRSPVR 130
Query: 350 PNNGRGPSRSP 360
+ R SRSP
Sbjct: 131 ESRRRSESRSP 141
Score = 58 (25.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 22/66 (33%), Positives = 27/66 (40%)
Query: 309 KERAAIGHG-RGP---SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERE 364
K R HG R P SRSP RR R P S ++ + S + SRSP
Sbjct: 75 KPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDR--KRSRRSRSRSSSRSRSPVRES 132
Query: 365 RPSPEN 370
R E+
Sbjct: 133 RRRSES 138
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 153 (58.9 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y+AR+ D+ER + YGK++ + MK GFAF+ +D RDAEDA LD
Sbjct: 1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTM 60
Query: 115 GRKGRRLRVEWTK 127
RL VE +
Sbjct: 61 EGSSMRLVVEMAR 73
Score = 106 (42.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQ---EDATRALDATNMSKLTDRVIS 217
PY+ R RD+ER + YGKI ++ ++ FAFV +E EDA LD M + R++
Sbjct: 10 PYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLV- 68
Query: 218 VEYA 221
VE A
Sbjct: 69 VEMA 72
Score = 90 (36.7 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
Identities = 42/130 (32%), Positives = 50/130 (38%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS SP RR R +P R+ SR K+ R + SRSP R R E+ SPS
Sbjct: 88 RRRSRSPRRRSR-TPPRRRSRSRDR-KRSRRSRSRSSSRSRSPVRESRRRSES---RSPS 142
Query: 342 PYRKGKPSPNNGRGP----SRSPYERERPSPENXXXXXXXXXXXXXXXXDNG-----RVP 392
P R K + R P RS P P+N D R P
Sbjct: 143 PKRDLKREASRSRSPLPAKDRSRTRSGSP-PKNGGDRKRSVSRGRSHSRDGSNRSVSRSP 201
Query: 393 SPNSMPEPRD 402
SP S P+D
Sbjct: 202 SPGS---PKD 208
Score = 67 (28.6 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 293 RGSP-DYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGHGSSPSPYRKGKP-S 349
RG P R+ SRSP ++ R+ R P R R RDR S S R P
Sbjct: 73 RGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSS--RSRSPVR 130
Query: 350 PNNGRGPSRSP 360
+ R SRSP
Sbjct: 131 ESRRRSESRSP 141
Score = 58 (25.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 22/66 (33%), Positives = 27/66 (40%)
Query: 309 KERAAIGHG-RGP---SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERE 364
K R HG R P SRSP RR R P S ++ + S + SRSP
Sbjct: 75 KPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDR--KRSRRSRSRSSSRSRSPVRES 132
Query: 365 RPSPEN 370
R E+
Sbjct: 133 RRRSES 138
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 170 (64.9 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 113
++ GN D R+ ++E +F +YG++ VD+KSG FAF+ +D RDAEDA+R D E
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 114 FGRKGRRLRVEWTK 127
F GRR+RVE+T+
Sbjct: 71 FD--GRRIRVEFTR 82
Score = 69 (29.3 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 282 RVRSPSPYRRDRGSPDYG--RNSSRSPYKKERAAIGHGRGPSRSP 324
R RS SP R SP Y R+ SRS + + R PSRSP
Sbjct: 211 RSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSP 255
Score = 63 (27.2 bits), Expect = 6.2e-16, Sum P(3) = 6.2e-16
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 369
G R SRSP R SP+ S S R S + R SRSP PSP+
Sbjct: 208 GRDRSRSRSPRAERRASPKYSPRRSRS--RSRSRSRSRSRSASRSP--SRSPSPQ 258
Score = 46 (21.3 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 387 DNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRS 421
D R SP + E R SP Y S R RSRS
Sbjct: 210 DRSRSRSPRA--ERRASPKYSPRRSRSRSRSRSRS 242
Score = 45 (20.9 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 13/56 (23%), Positives = 16/56 (28%)
Query: 346 GKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
G R SRSP R SP+ SP+ P P+
Sbjct: 203 GSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPSPQ 258
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 202 ALDATNMSKLTDRVISVEYAVRDDDDRR 229
A D T + + T R V+YAVR DD +
Sbjct: 155 ARDGTGVVEFT-RYEDVKYAVRKLDDTK 181
Score = 40 (19.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 399 EPRDSPGYDGADSPINERYRSRSPPAE 425
E S G G +R RSRSP AE
Sbjct: 196 EDNSSGGGSGGGG--RDRSRSRSPRAE 220
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 170 (64.9 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTE 113
++ GN D R+ ++E +F +YG++ VD+KSG FAF+ +D RDAEDA+R D E
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 114 FGRKGRRLRVEWTK 127
F GRR+RVE+T+
Sbjct: 71 FD--GRRIRVEFTR 82
Score = 69 (29.3 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 282 RVRSPSPYRRDRGSPDYG--RNSSRSPYKKERAAIGHGRGPSRSP 324
R RS SP R SP Y R+ SRS + + R PSRSP
Sbjct: 211 RSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSP 255
Score = 63 (27.2 bits), Expect = 6.2e-16, Sum P(3) = 6.2e-16
Identities = 21/55 (38%), Positives = 24/55 (43%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 369
G R SRSP R SP+ S S R S + R SRSP PSP+
Sbjct: 208 GRDRSRSRSPRAERRASPKYSPRRSRS--RSRSRSRSRSRSASRSP--SRSPSPQ 258
Score = 46 (21.3 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 387 DNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRS 421
D R SP + E R SP Y S R RSRS
Sbjct: 210 DRSRSRSPRA--ERRASPKYSPRRSRSRSRSRSRS 242
Score = 45 (20.9 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 13/56 (23%), Positives = 16/56 (28%)
Query: 346 GKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
G R SRSP R SP+ SP+ P P+
Sbjct: 203 GSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPSPQ 258
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 202 ALDATNMSKLTDRVISVEYAVRDDDDRR 229
A D T + + T R V+YAVR DD +
Sbjct: 155 ARDGTGVVEFT-RYEDVKYAVRKLDDTK 181
Score = 40 (19.1 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 399 EPRDSPGYDGADSPINERYRSRSPPAE 425
E S G G +R RSRSP AE
Sbjct: 196 EDNSSGGGSGGGG--RDRSRSRSPRAE 220
>DICTYBASE|DDB_G0275409 [details] [associations]
symbol:DDB_G0275409 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0275409 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_001134599.1 ProteinModelPortal:Q1ZXL1
EnsemblProtists:DDB0233346 GeneID:8619946 KEGG:ddi:DDB_G0275409
eggNOG:NOG288151 InParanoid:Q1ZXL1 OMA:DIKNGYA Uniprot:Q1ZXL1
Length = 737
Score = 219 (82.2 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 54/174 (31%), Positives = 89/174 (51%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGK-VDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN D D+E LF+ Y K +++VD+K+G+AF+ + D + ++ L R EF
Sbjct: 142 IFVGNLPRDTIVKDIENLFKNYVKSIEKVDIKNGYAFVIVSTN-DPDIVVKELHRKEFLN 200
Query: 117 KGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPY 176
K L V+ K E +PS+ +F++N++ T T D+ PY
Sbjct: 201 KS--LTVQIAKSESKKKEESE---------EVKPSRAIFIVNYNVSKTTTNDIADWCSPY 249
Query: 177 GKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN 230
G + V++ +NF FV++E + A++AL A ++ ++VEY V DR N
Sbjct: 250 GNVNRVQMVKNFCFVEFETIDQASKALKALDLKSFDGHSLTVEY-VNGSIDRDN 302
Score = 47 (21.6 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 18/89 (20%), Positives = 36/89 (40%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP-ENGHGSS 339
GR RS S + DR + +Y N++ + + + + + + NG+ +
Sbjct: 633 GRSRSRS-HSGDRRNNNYNNNNTNNNNNNNNNNNNNNNNNNNNNNNINNSNHFNNGYQNK 691
Query: 340 PSPYRKGKPSPNNGRGPSRSPYERERPSP 368
+ P+ NN S + ++ PSP
Sbjct: 692 TNSNNNNYPNNNNNNNDSNN---KQSPSP 717
Score = 43 (20.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 289 YRRDRG--SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKG 346
YR D + + N+ R+ ++ + H RG SRS R G N + ++ +
Sbjct: 601 YRDDNNFNNNEEFENNRRTYNNDKKRSRSHSRGRSRS--RSHSGDRRNNNYNNNNTNNNN 658
Query: 347 KPSPNN 352
+ NN
Sbjct: 659 NNNNNN 664
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 153 (58.9 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLD 110
R ++ GN D R+ ++E LF +YG V ++D+K G+AF+ DD RDAEDAI G D
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66
Query: 111 RTEFGRKGRRLRVE 124
+F G RLRVE
Sbjct: 67 GYDFD--GHRLRVE 78
Score = 106 (42.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 32/87 (36%), Positives = 39/87 (44%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR-----DRGSPEN 334
Y RVR R+D SP GR+ S+S + ++ R SRS R R SP
Sbjct: 189 YVRVREYDS-RKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAK 247
Query: 335 GHGSSPSPYRKGK-PSPNNGRGPSRSP 360
SP P K + PSP R SRSP
Sbjct: 248 STSRSPGPRSKSRSPSPRRSRSRSRSP 274
Score = 83 (34.3 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 30/88 (34%), Positives = 38/88 (43%)
Query: 281 GRVRSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
GR S S R R R ++S RSP K + G R SRSP R S
Sbjct: 219 GRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGP-RSKSRSP--SPRRSRSRSRSPL 275
Query: 340 PSPYRKGKPSPNNGRGPSRSPYERERPS 367
PS ++G SP+ P++SP PS
Sbjct: 276 PSVQKEGSKSPSKP-SPAKSPIHTRSPS 302
Score = 80 (33.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---R--NFAFVQYEVQEDATR 201
++R S+T++V N P R R++E F YG ++ + ++ R +AFV+++ DA
Sbjct: 2 SSRSSRTVYVGNL-PGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 202 ALDATNMSKLTDRVISVEYAV---RDDDDRR 229
A+ + + VE A R DD R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTR 91
Score = 63 (27.2 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 31/106 (29%), Positives = 38/106 (35%)
Query: 326 RRDRGSPENGHGSSPSPYR-KGKP---SPNNGRGPSRSPYERE-RPSPENXXXXXXXXXX 380
R+D SP G S S R +G+ S + R SRSP + R SP
Sbjct: 198 RKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRS 257
Query: 381 XXXX-----XXDNGRVPSPNSMPEPRDSPGYDG-ADSPINERYRSR 420
R P P+ E SP A SPI+ R SR
Sbjct: 258 KSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIHTRSPSR 303
Score = 59 (25.8 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 24/81 (29%), Positives = 30/81 (37%)
Query: 344 RKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP--SPNSMPEPR 401
RK SP+ GR S+S R R + + R P S + P PR
Sbjct: 198 RKDSRSPSRGRSYSKSR-SRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPR 256
Query: 402 DSPGYDGADSPINERYRSRSP 422
+ SP R RSRSP
Sbjct: 257 SK---SRSPSPRRSRSRSRSP 274
Score = 38 (18.4 bits), Expect = 6.8e-12, Sum P(3) = 6.8e-12
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 315 GHGRGPSRSPYRR 327
G G G SR P RR
Sbjct: 104 GRGDGGSRGPSRR 116
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 117 (46.2 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 111 (44.1 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF-GR 116
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF GR
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGR 139
Score = 93 (37.8 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVIS 217
++ R+I+
Sbjct: 133 NTEFQGRIIA 142
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 117 (46.2 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 88 (36.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTD 213
++ D
Sbjct: 133 NTEFQD 138
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 117 (46.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 85 (35.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 203
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 117 (46.2 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 84 (34.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 203
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 117 (46.2 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136
Score = 84 (34.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRAL 203
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAI 128
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 137 (53.3 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD-- 70
Query: 118 GRRLRVE 124
G R+ VE
Sbjct: 71 GSRITVE 77
Score = 99 (39.9 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 38/94 (40%), Positives = 45/94 (47%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRR--DR---------GSP 332
RS SP RR++ D SRSP ER+ GR S SP R+ D GSP
Sbjct: 181 RSRSPVRREKSVED----RSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDGSP 236
Query: 333 -ENGHG-SSPSPYRKGKPSPNNGRGPSRSPYERE 364
ENG+G +S SP G SP G RSP + E
Sbjct: 237 KENGNGRNSASPIVGGGESPVGLNGQDRSPIDDE 270
Score = 96 (38.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 164 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRA 202
TRTRDLER F YG++ V ++R++AFV++ DA A
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDA 60
Score = 81 (33.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 41/144 (28%), Positives = 51/144 (35%)
Query: 289 YR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGSSPSPYRK 345
YR +RG + +S SP KK R + R P SRSP RR S + S R
Sbjct: 124 YRCGERGHIERNCKNSPSP-KKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRS 182
Query: 346 GKP--SPNNGRGPSRSPYERERP-SPENXXXXXXXXXXXXXXXXDNGR----VPSPNSMP 398
P + SRSP ER SP+ G P N
Sbjct: 183 RSPVRREKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDGSPKENGNG 242
Query: 399 EPRDSPGYDGADSPINERYRSRSP 422
SP G +SP+ + RSP
Sbjct: 243 RNSASPIVGGGESPVGLNGQDRSP 266
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 146 (56.5 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 115 GRKGRRLRVE 124
G R+ VE
Sbjct: 61 C--GERVIVE 68
Score = 106 (42.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
Y R RD+ER F+ YGKI+ V ++ + FV+++ DA A+ N L + VE+A
Sbjct: 11 YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 50 (22.7 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 27/86 (31%), Positives = 37/86 (43%)
Query: 290 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR------RDRGSPENGHGSSPSPY 343
RRD GS YG S RS Y R+ P+R+ YR R S ++ P P
Sbjct: 74 RRD-GS--YG--SGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKVGLPLPE 128
Query: 344 RKGKPSPNNGRGPSRSPYERERPSPE 369
++ +P P S ERE+ P+
Sbjct: 129 QEPEPEPE-----SEPEQEREKQEPQ 149
Score = 48 (22.0 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 310 ERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRK-GKPS 349
ER + H RGP R GS +G+G S K G P+
Sbjct: 63 ERVIVEHARGPRRDG---SYGSGRSGYGYRRSGRDKYGPPT 100
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 138 (53.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
M I+ G + D+E FR YG++ V +K+GF F+ DD+RDAEDA+ L+ E
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 114 FGRKGRRLRVEWTK 127
G G R+ ++++K
Sbjct: 61 LG--GERVILDYSK 72
Score = 92 (37.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 31/75 (41%), Positives = 35/75 (46%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RSP P R R S R+ SRS R + R PSRSP + DR SP GS S
Sbjct: 237 RSRSP-PKRSRRESKSKSRSRSRSRSADNRKS----RSPSRSPKKVDR-SPSPPRGSR-S 289
Query: 342 PYRKGKPSPNNGRGP 356
P KG P + P
Sbjct: 290 PSEKGSPRRSRSASP 304
Score = 82 (33.9 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 167 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
+D+E F YG+I V ++ F FV+++ + DA A+ N +L + ++Y+
Sbjct: 17 KDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 78 (32.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 35/88 (39%), Positives = 43/88 (48%)
Query: 282 RVRSPS-PYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
R RS S RR R S ++ SRSP K+ R + SRS R R S +N S
Sbjct: 215 RSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRE-SKSKSRSRS---RSR-SADNRKSRS 269
Query: 340 PSPY-RKGKPSPNNGRGPSRSPYERERP 366
PS +K SP+ RG SRSP E+ P
Sbjct: 270 PSRSPKKVDRSPSPPRG-SRSPSEKGSP 296
Score = 73 (30.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 31/89 (34%), Positives = 39/89 (43%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP 340
GR RS S R S R SRS R++ + SRSP +R R ++ S
Sbjct: 204 GRSRSRSNSRSRSRSRSRDRRRSRS-----RSS-SRSKSRSRSPPKRSRRESKS---KSR 254
Query: 341 SPYRKGKPSPNNGRGPSRSPYERER-PSP 368
S R R PSRSP + +R PSP
Sbjct: 255 SRSRSRSADNRKSRSPSRSPKKVDRSPSP 283
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 138 (53.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
M I+ G + D+E FR YG++ V +K+GF F+ DD+RDAEDA+ L+ E
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 114 FGRKGRRLRVEWTK 127
G G R+ ++++K
Sbjct: 61 LG--GERVILDYSK 72
Score = 92 (37.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 31/75 (41%), Positives = 35/75 (46%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RSP P R R S R+ SRS R + R PSRSP + DR SP GS S
Sbjct: 237 RSRSP-PKRSRRESKSKSRSRSRSRSADNRKS----RSPSRSPKKVDR-SPSPPRGSR-S 289
Query: 342 PYRKGKPSPNNGRGP 356
P KG P + P
Sbjct: 290 PSEKGSPRRSRSASP 304
Score = 82 (33.9 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 167 RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
+D+E F YG+I V ++ F FV+++ + DA A+ N +L + ++Y+
Sbjct: 17 KDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 78 (32.5 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 35/88 (39%), Positives = 43/88 (48%)
Query: 282 RVRSPS-PYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
R RS S RR R S ++ SRSP K+ R + SRS R R S +N S
Sbjct: 215 RSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRE-SKSKSRSRS---RSR-SADNRKSRS 269
Query: 340 PSPY-RKGKPSPNNGRGPSRSPYERERP 366
PS +K SP+ RG SRSP E+ P
Sbjct: 270 PSRSPKKVDRSPSPPRG-SRSPSEKGSP 296
Score = 73 (30.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 31/89 (34%), Positives = 39/89 (43%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP 340
GR RS S R S R SRS R++ + SRSP +R R ++ S
Sbjct: 204 GRSRSRSNSRSRSRSRSRDRRRSRS-----RSS-SRSKSRSRSPPKRSRRESKS---KSR 254
Query: 341 SPYRKGKPSPNNGRGPSRSPYERER-PSP 368
S R R PSRSP + +R PSP
Sbjct: 255 SRSRSRSADNRKSRSPSRSPKKVDRSPSP 283
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 189 (71.6 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 71/325 (21%), Positives = 123/325 (37%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYHTRT--R 167
G R+ VE + + R P++T + + + +R +
Sbjct: 61 C--GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 168 DLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224
DL+ + G++ + R+N +++ D RAL+ + +++ R I + V D
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL---VED 175
Query: 225 DDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVR 284
R R R
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR 235
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S S R R + SRSP K++ + H G SRS +D+ + + + +
Sbjct: 236 SQS---RSRSK----KEKSRSPSKEKSRSRSHSAGKSRSK-SKDQAEEKIQNNDNVGKPK 287
Query: 345 KGKPSPNNGRGPSRSPYERERPSPE 369
PS + + SRS + R E
Sbjct: 288 SRSPSRHKSKSKSRSRSQERRVEEE 312
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 141 (54.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 77 (32.2 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRNRSRSNSRSRSYSP-RRSRGSP 235
Score = 62 (26.9 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SR+
Sbjct: 202 YGRSRSRSRSRSRNRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRSRT 248
Score = 58 (25.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRNRSRSNSRSRSYSP-RRSRGSP 235
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 61 (26.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SR+
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRSRT 248
Score = 58 (25.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 61 (26.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SR+
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRSRT 248
Score = 58 (25.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 61 (26.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SR+
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRSRT 248
Score = 58 (25.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 61 (26.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SR+
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRSRT 248
Score = 58 (25.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 61 (26.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SR+
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSRSRSRT 248
Score = 58 (25.5 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 52 (23.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 141 (54.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 58 (25.5 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 57 (25.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/52 (40%), Positives = 24/52 (46%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRSPYERE 364
+GR SRS R S N S SP R +G P SP + R SRS E
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSR--SRSHISEE 251
Score = 52 (23.4 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 141 (54.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 50/183 (27%), Positives = 81/183 (44%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TRPSKTLFVINFDPYHTRTR 167
++ G RLRVE+ + +R S+ V++ P +
Sbjct: 78 DYD--GYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Query: 168 DLERHFEPYGKIISVRIRRN-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYA-VRDD 225
DL+ H G + + R+ V++ +ED T A+ + +K Y V+ D
Sbjct: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
Query: 226 DDR 228
R
Sbjct: 196 GPR 198
Score = 76 (31.8 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP 332
SP YGR+ SRS + + + R S SP RR RGSP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 58 (25.5 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 222 RSRSYSP-RRSRGSPRYSPRHSRS 244
Score = 57 (25.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/52 (40%), Positives = 24/52 (46%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRSPYERE 364
+GR SRS R S N S SP R +G P SP + R SRS E
Sbjct: 202 YGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRHSR--SRSHISEE 251
Score = 52 (23.4 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP G S S R S +N R S SP R R SP
Sbjct: 199 SPSYGRSRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 235
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 197 PR-SPSYGRSRSRSRSRSRSRS 217
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 142 (55.0 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
++ G R DLERLF RYG+V VDMK +AF+ D RDA+DA LD +F
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD-- 70
Query: 118 GRRLRVEWTK 127
G R+ VE+++
Sbjct: 71 GSRITVEFSR 80
Score = 96 (38.9 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 164 TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
TRTRDLER F YG++ V ++R++AFV++ DA A + I+VE++
Sbjct: 22 TRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
Score = 78 (32.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/89 (34%), Positives = 35/89 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPE-NGHGSSP 340
R R SP D GSP + S P K + +G R D GSP+ NG S
Sbjct: 206 RARDRSPVLDDEGSPKI-IDGSPPPSPKLQKEVGSDR---------DGGSPQDNGRNSVV 255
Query: 341 SPY-RKGKPSPNNGRGPSRSPYERERPSP 368
SP G S R P YE R SP
Sbjct: 256 SPVVGAGGDSSKEDRSPVDDDYEPNRTSP 284
Score = 71 (30.1 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 41/136 (30%), Positives = 50/136 (36%)
Query: 289 YR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGK 347
YR +RG + RN SP KK R + + R P RS R R SP S S R
Sbjct: 124 YRCGERGHIE--RNCKNSP-KKLRRSGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 180
Query: 348 PSPNNGRGP---SRSPYERERP-SPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPE---P 400
P R SRSP + SP D PSP E
Sbjct: 181 PVRRRERSVEERSRSPKRMDDSLSPRARDRSPVLDDEGSPKIIDGSPPPSPKLQKEVGSD 240
Query: 401 RD--SPGYDGADSPIN 414
RD SP +G +S ++
Sbjct: 241 RDGGSPQDNGRNSVVS 256
Score = 58 (25.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 29/103 (28%), Positives = 37/103 (35%)
Query: 325 YR-RDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXX 383
YR +RG E +SP R+ S + R P RS R R SP
Sbjct: 124 YRCGERGHIERNCKNSPKKLRR---SGSYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRS 180
Query: 384 XXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 426
R S+ E SP D ++ R R RSP +D
Sbjct: 181 PVRRRER-----SVEERSRSP--KRMDDSLSPRARDRSPVLDD 216
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 140 (54.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLD 110
R I+ GN D R+ ++E LF +YG V ++D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 111 RTEFGRKGRRLRVE 124
+F G LRVE
Sbjct: 67 GYDFD--GHHLRVE 78
Score = 80 (33.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---R--NFAFVQYEVQEDATR 201
++R S+T++V N P R R++E F YG ++ + ++ R +AFV++E DA
Sbjct: 2 SSRSSRTIYVGNL-PGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 202 ALDATNMSKLTDRVISVEYAVRDDDDRRNGH 232
A+ + + VE A RR+ H
Sbjct: 61 AIYGRDGYDFDGHHLRVELA---HGGRRSSH 88
Score = 79 (32.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 34/88 (38%), Positives = 39/88 (44%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
+Y RVR RRD SP GR+ Y K R+ GR PSRS R R
Sbjct: 186 EYVRVREYDS-RRDSRSPSRGRS-----YSKSRS---RGRSPSRS---RSRS---RSRSK 230
Query: 339 SPSPYRKG-KPSPNNGRGPSRSPYERER 365
S SP K + SP + SRSP R R
Sbjct: 231 SRSPKAKSLRRSP--AKSTSRSPRSRSR 256
Score = 38 (18.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 344 RKGKPSPNNGRGPSRSPYERERPS 367
R+ SP+ GR S+S PS
Sbjct: 196 RRDSRSPSRGRSYSKSRSRGRSPS 219
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 111 (44.1 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M IF GN + +L LF +YG V D+ + F++MD+E A+ A+ L + E
Sbjct: 1 MVKIFVGNVASATTEDELRALFEKYGAVSDCDILKNYGFVHMDEEEAAQKAVSALHKHEV 60
Query: 115 GRKGRRLRVEW 125
G R+ VE+
Sbjct: 61 N--GSRITVEY 69
Score = 92 (37.4 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDA 205
T R + ++V N P ++ F+P+GK++ I +N+AFV + + +A A+
Sbjct: 72 TKVRNATKIYVGNV-PEGVAAAKIKELFQPFGKVVECDIVKNYAFVHMQRENEALDAIAK 130
Query: 206 TNMSKLTDRVISVEYAVRDDDDRRNG 231
N SK+ + I V + R + R NG
Sbjct: 131 LNHSKVDGQKIFVSLS-RSNPSR-NG 154
Score = 58 (25.5 bits), Expect = 2.2e-11, Sum P(3) = 2.2e-11
Identities = 26/91 (28%), Positives = 31/91 (34%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
D+ P P RD P GR P + R P R D +P +
Sbjct: 173 DHPHFLPPRPPPRDY-YPPRGRIPPPPPLPPPPPRSYYERDPYERSLRHDPYAPPSPRFY 231
Query: 339 SPSPYRKGKPSPNNGRGPS-RSPYERERPSP 368
PY + P P P S Y RER SP
Sbjct: 232 DRDPYDRRLPPPQRPVSPPVASRYYRER-SP 261
Score = 56 (24.8 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 19/50 (38%), Positives = 21/50 (42%)
Query: 320 PSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 369
P RS Y RD H PY PSP R R PY+R P P+
Sbjct: 204 PPRSYYERDPYERSLRH----DPY--APPSP---RFYDRDPYDRRLPPPQ 244
Score = 46 (21.3 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 19/82 (23%), Positives = 28/82 (34%)
Query: 345 KGKPSPNNGRGPSRSPYERER--PSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD 402
+ PS NGRG P P P + GR+P P +P P
Sbjct: 147 RSNPS-RNGRGEDYYPPPPPHYPPHPHDHPHFLPPRPPPRDYYPPRGRIPPPPPLPPPPP 205
Query: 403 SPGYDGADSPINERYRSRSPPA 424
Y+ + R+ +PP+
Sbjct: 206 RSYYERDPYERSLRHDPYAPPS 227
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 146 (56.5 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
IF G AR+ D+ER F+ YG++ +D+K GF F+ DD RDAEDA+ LD E
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV+++ DA A+ + +L +
Sbjct: 6 IFIGRLNP-SAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGKELCN 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A VR R G
Sbjct: 65 ERVTIEHARVRLRGGRGRG 83
Score = 71 (30.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 31/96 (32%), Positives = 40/96 (41%)
Query: 282 RVRSPSPYR-RDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGH 336
R RS S R R RG S R+ S SP R+ R S SP R ++ PE+
Sbjct: 189 RSRSNSSSRSRSRGRSASRSRSRSRSHSPKSHNRSR-SRSRSASASPVRPKEAPRPESAS 247
Query: 337 --GSSPSPYRKGKPSPNNGRGPSRSPYERERPSPEN 370
S+ P R S + R SRS PS ++
Sbjct: 248 PPASAQHPPRSRSRSRSRSRSRSRSRSRSRSPSTDS 283
Score = 65 (27.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 290 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP 348
R+ S +SSRS + A+ R S SP +R S +S SP R K P
Sbjct: 183 RKKSRSRSRSNSSSRSRSRGRSASRSRSRSRSHSPKSHNR-SRSRSRSASASPVRPKEAP 241
Query: 349 SPNNGRGPSRS---PYERER 365
P + P+ + P R R
Sbjct: 242 RPESASPPASAQHPPRSRSR 261
Score = 54 (24.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 22/72 (30%), Positives = 31/72 (43%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R SRS + ++ RG S S R R S H SP + + + + R S S
Sbjct: 183 RKKSRSRSRSNSSSRSRSRGRSAS---RSR-SRSRSH--SPKSHNRSR---SRSRSASAS 233
Query: 360 PYE-RERPSPEN 370
P +E P PE+
Sbjct: 234 PVRPKEAPRPES 245
Score = 50 (22.7 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 22/100 (22%), Positives = 31/100 (31%)
Query: 326 RRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXX 385
R+ S + SS S R S + R S SP R +
Sbjct: 183 RKKSRSRSRSNSSSRSRSRGRSASRSRSRSRSHSPKSHNRSRSRSRSASASPVRPKEAPR 242
Query: 386 XDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAE 425
++ P+ P S + S R RSRSP +
Sbjct: 243 PESASPPASAQHPPRSRSRSRSRSRSRSRSRSRSRSPSTD 282
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 178 (67.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 73/329 (22%), Positives = 121/329 (36%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL----- 109
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 110 --DRT--EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTR 165
+R E R RR R ++ P +T F + + +R
Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 166 T--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS-VE 219
+DL+ G++ + R N +++ D RALD + +++ R I +E
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 220 YAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXX 278
R R +G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R +S S + DRGS R+ S+ Y+K R+ R SRSP +G ++ S
Sbjct: 241 RKSRSKSKSKAKSDRGSRSRSRSRSKDEYEKSRS---RSRSRSRSPKENGKGDVKSKSRS 297
Query: 339 -SPSPYRKGKPSP-NNGRGPSRSPYERER 365
S S P+P + R S P R
Sbjct: 298 RSQSRSHSPLPAPPSKARSVSPPPKRASR 326
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 125 (49.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ G DA +LE +F R+G++ +V + GFAF+ DD RDAEDA+R LD +
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 115 GRKGRRLRVE 124
G R RVE
Sbjct: 65 C--GVRARVE 72
Score = 82 (33.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYE-VQ--EDATRALDATNMSKLTDR 214
P +++LE F+ +G+I V + R FAFV+Y+ V+ EDA RALD + + + R
Sbjct: 11 PSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRAR 70
Query: 215 V 215
V
Sbjct: 71 V 71
Score = 73 (30.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 29/77 (37%), Positives = 33/77 (42%)
Query: 279 DYGRVRSPSPYR-RDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPEN 334
D GR RS S R RDR S D R+ SR ++ R SRSP RDR S
Sbjct: 104 DRGRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDR-SHSK 162
Query: 335 GHGSSPSPYRKGKPSPN 351
S S R SP+
Sbjct: 163 SRSRSRSRSRSRSASPH 179
Score = 70 (29.7 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 33/94 (35%), Positives = 41/94 (43%)
Query: 281 GRVRSPSPYRRDRG-----SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPEN 334
G R SPYR DRG S D GR+ SR ++R+ R RS R R+R E
Sbjct: 93 GGGRDRSPYRGDRGRSRSRSRDRGRDRSRDR-SRDRS---RDRSRDRSRERSRER---ER 145
Query: 335 GHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
S SP + + S + R SRS SP
Sbjct: 146 TRSRSRSPQERDR-SHSKSRSRSRSRSRSRSASP 178
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 125 (49.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ G DA +LE +F R+G++ +V + GFAF+ DD RDAEDA+R LD +
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 115 GRKGRRLRVE 124
G R RVE
Sbjct: 65 C--GVRARVE 72
Score = 82 (33.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYE-VQ--EDATRALDATNMSKLTDR 214
P +++LE F+ +G+I V + R FAFV+Y+ V+ EDA RALD + + + R
Sbjct: 11 PSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRAR 70
Query: 215 V 215
V
Sbjct: 71 V 71
Score = 73 (30.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 29/77 (37%), Positives = 33/77 (42%)
Query: 279 DYGRVRSPSPYR-RDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPEN 334
D GR RS S R RDR S D R+ SR ++ R SRSP RDR S
Sbjct: 104 DRGRSRSRSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDR-SHSK 162
Query: 335 GHGSSPSPYRKGKPSPN 351
S S R SP+
Sbjct: 163 SRSRSRSRSRSRSASPH 179
Score = 70 (29.7 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 33/94 (35%), Positives = 41/94 (43%)
Query: 281 GRVRSPSPYRRDRG-----SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPEN 334
G R SPYR DRG S D GR+ SR ++R+ R RS R R+R E
Sbjct: 93 GGGRDRSPYRGDRGRSRSRSRDRGRDRSRDR-SRDRS---RDRSRDRSRERSRER---ER 145
Query: 335 GHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
S SP + + S + R SRS SP
Sbjct: 146 TRSRSRSPQERDR-SHSKSRSRSRSRSRSRSASP 178
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 126 (49.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
M+R ++ G A D+E FR YGK+ V MK+GF F+ D+RDA+DA+ L+ E
Sbjct: 1 MVR-VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKE 59
Query: 114 FGRKGRRLRVEWTKHE 129
G R+ +E+ + +
Sbjct: 60 LC--GERVILEFPRRK 73
Score = 92 (37.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 35/83 (42%), Positives = 41/83 (49%)
Query: 282 RVRSPSPYRRDRGSPDYGRNS-SRSPYKK-ERAAIGHGRGPSRSPYRRDRG-SPENGHGS 338
R RSP RR GS R S S SP K+ ++ A + SRS RR R SP N
Sbjct: 205 RSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPN---R 261
Query: 339 SPSPY-RKGKPSPNNGRGPSRSP 360
SPSP R+ SP +G S SP
Sbjct: 262 SPSPKKRRDNSSPRSG---SASP 281
Score = 90 (36.7 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220
P RD+E F YGK+ V ++ F FV ++ Q DA A+ N +L + +E+
Sbjct: 10 PNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69
Query: 221 AVR 223
R
Sbjct: 70 PRR 72
Score = 75 (31.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 31/87 (35%), Positives = 39/87 (44%)
Query: 282 RVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGS 338
R RS SP RR R SP SRSP + R+ G R SRS + R S +
Sbjct: 188 RSRSRSPRRRSRSRSP----TRSRSPPARRRSP-GSDRSDRKSRSASPKKR-SDKRARSE 241
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERER 365
S S R G + P+RSP ++R
Sbjct: 242 SKSRSRSGGRRSRSNSPPNRSPSPKKR 268
Score = 65 (27.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 31/100 (31%), Positives = 36/100 (36%)
Query: 318 RGPSRSPYRRDRG-SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXX 376
R SRSP RR R SP SP P R+ P + SRS ++R
Sbjct: 188 RSRSRSPRRRSRSRSPTRSR--SP-PARRRSPGSDRSDRKSRSASPKKRSDKRARSESKS 244
Query: 377 XXXXXXXXXXDNGRVPSPNSMPEP---RD-SPGYDGADSP 412
N P PN P P RD S G+ SP
Sbjct: 245 RSRSGGRRSRSNS--P-PNRSPSPKKRRDNSSPRSGSASP 281
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 126 (49.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
M+R ++ G A D+E FR YGK+ V MK+GF F+ D+RDA+DA+ L+ E
Sbjct: 1 MVR-VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKE 59
Query: 114 FGRKGRRLRVEWTKHE 129
G R+ +E+ + +
Sbjct: 60 LC--GERVILEFPRRK 73
Score = 92 (37.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 35/83 (42%), Positives = 41/83 (49%)
Query: 282 RVRSPSPYRRDRGSPDYGRNS-SRSPYKK-ERAAIGHGRGPSRSPYRRDRG-SPENGHGS 338
R RSP RR GS R S S SP K+ ++ A + SRS RR R SP N
Sbjct: 205 RSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPN---R 261
Query: 339 SPSPY-RKGKPSPNNGRGPSRSP 360
SPSP R+ SP +G S SP
Sbjct: 262 SPSPKKRRDNSSPRSG---SASP 281
Score = 90 (36.7 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220
P RD+E F YGK+ V ++ F FV ++ Q DA A+ N +L + +E+
Sbjct: 10 PNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69
Query: 221 AVR 223
R
Sbjct: 70 PRR 72
Score = 75 (31.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 31/87 (35%), Positives = 39/87 (44%)
Query: 282 RVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGP--SRSPYRRDRGSPENGHGS 338
R RS SP RR R SP SRSP + R+ G R SRS + R S +
Sbjct: 188 RSRSRSPRRRSRSRSP----TRSRSPPARRRSP-GSDRSDRKSRSASPKKR-SDKRARSE 241
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERER 365
S S R G + P+RSP ++R
Sbjct: 242 SKSRSRSGGRRSRSNSPPNRSPSPKKR 268
Score = 65 (27.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 31/100 (31%), Positives = 36/100 (36%)
Query: 318 RGPSRSPYRRDRG-SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXX 376
R SRSP RR R SP SP P R+ P + SRS ++R
Sbjct: 188 RSRSRSPRRRSRSRSPTRSR--SP-PARRRSPGSDRSDRKSRSASPKKRSDKRARSESKS 244
Query: 377 XXXXXXXXXXDNGRVPSPNSMPEP---RD-SPGYDGADSP 412
N P PN P P RD S G+ SP
Sbjct: 245 RSRSGGRRSRSNS--P-PNRSPSPKKRRDNSSPRSGSASP 281
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 177 (67.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 73/330 (22%), Positives = 120/330 (36%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL----- 109
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 110 --DRT--EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTR 165
+R E R RR R ++ P +T F + + +R
Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 166 T--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS-VE 219
+DL+ G++ + R N +++ D RALD + +++ R I +E
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 220 YAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXX 278
R R +G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R +S S + DRGS R+ S+ Y+K R+ R SRSP +G ++
Sbjct: 241 RKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRS---RSRSRSRSPKENGKGDIKS-KSR 296
Query: 339 SPSPYRKGKP---SPNNGRGPSRSPYERER 365
S S R P P+ R S P R
Sbjct: 297 SRSQSRSDSPLPAPPSKARSVSPPPKRASR 326
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 176 (67.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 75/332 (22%), Positives = 124/332 (37%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKEL 60
Query: 115 GRKGRRLRVEWTKHEX------XXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYH 163
G R+ VE + T+ R P +T + + +
Sbjct: 61 C--GERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 164 TRT--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS- 217
+R +DL+ G++ + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
Query: 218 VEYAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXX 276
+EY R R +G
Sbjct: 179 IEYKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRS 238
Query: 277 XXDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
R +S S + DRGS + R+ S+ Y K R+ R SRSP ENG
Sbjct: 239 KGRKSRSKSKSKPKSDRGSHSHSRSRSKDKYGKSRS-----RSRSRSP-------KENGK 286
Query: 337 GSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
G S R S ++ P+ P + SP
Sbjct: 287 GDIKSKSRSRSQSRSHSPLPA-PPSKARSMSP 317
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 145 (56.1 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 44/169 (26%), Positives = 79/169 (46%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
+F G+ AR+ D+E+ F+ YG++ + +K+GF F+ +D RDA+DAI L+ E +
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDE 65
Query: 118 GRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR---PSKTLFVINFDPYHTRT--RDLERH 172
RR+ +E + ++R P +T I + +R +DL+
Sbjct: 66 -RRVTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRIIVENLSSRISWQDLKDV 124
Query: 173 FEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218
G++ V R RN V++ D AL+ + ++L R I +
Sbjct: 125 MRKAGEVTYVDAHRNNRNEGVVEFASYSDMKSALEKLDGTELNGRRIKL 173
Score = 65 (27.9 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGS-PENGHGSSP 340
R++ +RR S R+ SRS + + R SRS R + S + H SS
Sbjct: 170 RIKLIEDHRRHSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRTPKKSYSQKSHRSS- 228
Query: 341 SPYRKGKPSPNNGRGPSRS 359
P PSP++ + SRS
Sbjct: 229 LP--ASSPSPSSSKRKSRS 245
Score = 43 (20.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 316 HGRGPSRSPYR---RDRG-SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPEN 370
H R SRS R R R S S S R P + + RS PSP +
Sbjct: 180 HSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRTPKKSYSQKSHRSSLPASSPSPSS 238
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 176 (67.0 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 81/335 (24%), Positives = 130/335 (38%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MSRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDL 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN-----TR---PSKTLFVINFDPYHTRT 166
G+R+ VE T + R P++T + + + +R
Sbjct: 61 C--GKRVIVEHTIGQRRDGGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENLSSRC 118
Query: 167 --RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
+DL+ + G++ + R+N +++ D RAL+ + +++ R I +
Sbjct: 119 SWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRL-IE 177
Query: 222 VRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYG 281
R RR +
Sbjct: 178 DRPGARRRRSYSRSASRSRSRSRRSRRSRSHSRTSSRSGASGSRSRSRSTSKKAKSRS-S 236
Query: 282 RVRSPSPYRRDRGSPDYGR-NS-SRSPY-KKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R+ S R G D GR NS SRSP KK + GR SRS R + +
Sbjct: 237 RMEESSNGARKGG--DSGRDNSLSRSPQNKKSKRENKRGRSDSRSRSRSKSRNDRDLSRE 294
Query: 339 SPSPYRKGKPSPNNGR-GPSRS-PYERERP-SPEN 370
S S ++ S + GR G RS + R R +P N
Sbjct: 295 SGSKSQEASKSGDEGRAGTHRSRAHSRSRSQTPPN 329
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 175 (66.7 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 73/330 (22%), Positives = 120/330 (36%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL----- 109
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 110 --DRT--EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTR 165
+R E R RR R ++ P +T F + + +R
Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 166 T--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS-VE 219
+DL+ G++ + R N +++ D RALD + +++ R I +E
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 220 YAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXX 278
R R +G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R +S S + DRGS R+ S+ Y+K R+ R SRSP +G ++
Sbjct: 241 RKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRS---RSRSRSRSPKENGKGDIKS-KSR 296
Query: 339 SPSPYRKGKP---SPNNGRGPSRSPYERER 365
S S R P P+ R S P R
Sbjct: 297 SRSQSRSDSPLPAPPSKARSVSPPPKRASR 326
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 178 (67.7 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 78/378 (20%), Positives = 129/378 (34%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYHTRT--R 167
G R+ VE + + R P++T + + + +R +
Sbjct: 61 C--GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 168 DLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224
DL+ + G++ + R+N +++ D RAL+ + +++ R I + V D
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL---VED 175
Query: 225 DDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVR 284
R R R
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR 235
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRD-RGSPENGHGSSPSPY 343
S S R R + R+ S+ + + R S+ P + S G S SP
Sbjct: 236 SQS---RSRSKKEKSRSPSKDKSRSRSRSADKRRSKSKDPAEEKVQNSDRTGKSKSRSPS 292
Query: 344 RKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDS 403
R S + R R E R S R S + + R
Sbjct: 293 RH--KSKSRSRSQERGA-EEARGSASRSRSKEKSLRKSRSRSQGGSRSRSRSKSKDKRKG 349
Query: 404 PGYDGADSPINERYRSRS 421
+S R RS+S
Sbjct: 350 RKRSREESRSRSRSRSKS 367
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 117 (46.2 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M IF GN + DL LF +G V D+ + F++MD +++AE AIR L E
Sbjct: 1 MVKIFIGNLSPTSTADDLRSLFSEFGIVKECDVLKNYGFVHMDSKKEAEAAIRKLHHYEL 60
Query: 115 GRKGRRLRVEWTK 127
KG+ + VE +K
Sbjct: 61 --KGQAINVELSK 71
Score = 82 (33.9 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 208
R S L V N T ++L FE YG ++ I +++AFV E +DA A+
Sbjct: 75 RGSTKLHVSNISSGCTN-QELRAKFEEYGPVVECDIVKDYAFVHMERMDDAMEAISGLEN 133
Query: 209 SKLTDRVISVE 219
+ ++I V+
Sbjct: 134 TTFQGKLIKVQ 144
Score = 58 (25.5 bits), Expect = 9.5e-11, Sum P(3) = 9.5e-11
Identities = 34/91 (37%), Positives = 37/91 (40%)
Query: 281 GRVRSPSPYRRDR-GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
G P Y RDR GS DY Y+K RA H P+ S Y DR P H
Sbjct: 250 GYPERPPVYERDRFGSIDY--------YEKFRA---H---PAASSYYEDR--P---HAIP 290
Query: 340 PSPYRKGKPSPNNGR----GPSRSPYERERP 366
P P S + R PS PYER RP
Sbjct: 291 PPPPPPPLSSSSLSRMRLAPPSLDPYER-RP 320
Score = 56 (24.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 18/50 (36%), Positives = 20/50 (40%)
Query: 320 PSRSPY-RRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
PS PY RR P ++ S R P G G YER R SP
Sbjct: 311 PSLDPYERRPLAPPPPTAAAAASFARDRSPIRRVGAGAEGYSYERSRLSP 360
Score = 56 (24.8 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 21/60 (35%), Positives = 23/60 (38%)
Query: 310 ERAAIGHGRG--PSRSPYRRDRGSPENGHGSSPSP-YRKGK--PSPNNGRGPSRSPYERE 364
+ + G G G PSR P R G G PS Y G P P R PS Y E
Sbjct: 179 QNGSYGGGMGGYPSRGPPRGGPSYGMGGPGGHPSRGYPAGPLPPPPPMSRRPSYGEYGAE 238
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 174 (66.3 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 69/312 (22%), Positives = 116/312 (37%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL----- 109
M ++ G Y+ R+ D++R F YG++ VD+K+G+ F+ +D RDA+DA+ L
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 110 --DRT--EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTR 165
+R E R RR R ++ P +T + + + +R
Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR 120
Query: 166 T--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS-VE 219
+DL+ G++ + R N +++ D RALD + +++ R I +E
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 220 YAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXX 278
R R +G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R +S S + DRGS + R+ S+ Y+K R+ R SRSP +G ++
Sbjct: 241 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRS-----RSRSRSPKENGKGDIKS-KSR 294
Query: 339 SPSPYRKGKPSP 350
S S R P P
Sbjct: 295 SRSQSRSNSPLP 306
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 138 (53.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y R+ D++R F YGK+ VD+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 1 MPRVYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKEL 60
Query: 115 GRKGRRLRVE 124
G R+ VE
Sbjct: 61 C--GERVMVE 68
Score = 116 (45.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
YH R +D++R F YGK++ V ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVMVEHA 70
Query: 222 --VRDDDDRRNG 231
R D D G
Sbjct: 71 RGPRRDRDSYGG 82
Score = 80 (33.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 36/145 (24%), Positives = 53/145 (36%)
Query: 282 RVRSPSPYRRDRGSPDYGRNS-SRSPYK-KERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
R RS S RR R GR S S+S +K + ++ R +R + R R S
Sbjct: 221 RSRSRSRSRRHRSRSRSGRRSRSKSGHKSRSKSPSSKSRSRNRKSHSRSRSRTHKSRSRS 280
Query: 340 PSPYRKGKPSPNNGRGPSRSPYERERP-SPENXXXXXXXXXXXXXXXXDNGRVP-SPNSM 397
S + + R S S + +R S E +G P S +
Sbjct: 281 TSRKSRSRSDDRKSRSKSTSKVKSDRGRSKEKSVSKKSRSRSASPMENGDGERPKSASRS 340
Query: 398 PEPR-DSPGYDGADSPINERYRSRS 421
P P+ + Y D + R RS+S
Sbjct: 341 PSPQAEQSKYKSPDR--HSRSRSKS 363
Score = 73 (30.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 30/130 (23%), Positives = 49/130 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS-SPSPYRKGKPSPNN-GRGPS 357
R SRS ++ + + R SRS RR R +G S S S ++ SP++ R +
Sbjct: 203 RRRSRSRSRRSSRSRSNSRSRSRSRSRRHRSRSRSGRRSRSKSGHKSRSKSPSSKSRSRN 262
Query: 358 RSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERY 417
R + R R R S + + R + ++++
Sbjct: 263 RKSHSRSRSRTHKSRSRSTSRKSRSRSDDRKSRSKSTSKVKSDRGR----SKEKSVSKKS 318
Query: 418 RSRSP-PAED 426
RSRS P E+
Sbjct: 319 RSRSASPMEN 328
Score = 70 (29.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 40/148 (27%), Positives = 52/148 (35%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGR-GPSRSPYRRDRGSPENGHGSSP 340
R RS S RR S R+ SRS ++ R+ GR S+S ++ SP + S
Sbjct: 203 RRRSRSRSRRSSRSRSNSRSRSRSRSRRHRSRSRSGRRSRSKSGHKSRSKSPSS---KSR 259
Query: 341 SPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEP 400
S RK + SRS R S D GR + +
Sbjct: 260 SRNRKSHSRSRSRTHKSRSR-STSRKSRSRSDDRKSRSKSTSKVKSDRGRSKEKSVSKKS 318
Query: 401 RD---SPGYDGADSPINERYRSRSPPAE 425
R SP +G RS SP AE
Sbjct: 319 RSRSASPMENGDGERPKSASRSPSPQAE 346
Score = 57 (25.1 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 20/56 (35%), Positives = 22/56 (39%)
Query: 310 ERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNN-GRGPSRSPYERE 364
ER + H RGP RRDR S G G R G S + GR P E
Sbjct: 63 ERVMVEHARGP-----RRDRDSYGGGGGGGGGGGRSGYSSRSRTGRDKYGPPVRTE 113
Score = 41 (19.5 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 399 EPRDSPGYDGADSPINERYRSRS 421
+PR Y G+ S R RSRS
Sbjct: 186 KPRRRRSYSGSRSRSRSRRRSRS 208
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 136 (52.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 136 (52.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 177 (67.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 69/320 (21%), Positives = 120/320 (37%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYHTRT--R 167
G R+ VE + + R P++T + + + +R +
Sbjct: 61 C--GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 168 DLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224
DL+ + G++ + R+N +++ D RAL+ + +++ R I + V D
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL---VED 175
Query: 225 DDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVR 284
R R R
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSR 235
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGHGSSPSPY 343
S S R R + SRSP K ++ R P +S + +D + + S
Sbjct: 236 SQS---RSRSK----KEKSRSPSKDNKSR-SRSRSPDKSRSKSKDHAEDKLQNNDSAGKA 287
Query: 344 RKGKPSPNNGRGPSRSPYER 363
+ PS ++ + SRS R
Sbjct: 288 KSHSPSRHDSKSRSRSQERR 307
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 135 (52.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 115 GRKGRRLRVE 124
G R+ VE
Sbjct: 61 C--GERVIVE 68
Score = 104 (41.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
Y+ R +D++R F YG+++ + ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
Query: 222 VRDDDDRRNGH 232
R R+G+
Sbjct: 71 -RGPRRDRDGY 80
Score = 40 (19.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 310 ERAAIGHGRGPSR 322
ER + H RGP R
Sbjct: 63 ERVIVEHARGPRR 75
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 69/320 (21%), Positives = 120/320 (37%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYHTRT--R 167
G R+ VE + + R P++T + + + +R +
Sbjct: 61 C--GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 168 DLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224
DL+ + G++ + R+N +++ D RAL+ + +++ R I + V D
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL---VED 175
Query: 225 DDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVR 284
R R R
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSR 235
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGHGSSPSPY 343
S S R R + SRSP K ++ R P +S + +D + + S
Sbjct: 236 SQS---RSRSK----KEKSRSPSKDNKSR-SRSRSPDKSRSKSKDHAEDKLQNNDSAGKA 287
Query: 344 RKGKPSPNNGRGPSRSPYER 363
+ PS ++ + SRS R
Sbjct: 288 KSHSPSRHDSKSRSRSQERR 307
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 145 (56.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 46/164 (28%), Positives = 75/164 (45%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D ++ D+E LF +YGK+ +++K+ FAF+ +D RDAEDA+ G R
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFG--RN 63
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTN------TRPSKTLFVINFDPYHTRT 166
+G +LRVE+ + TR S+ ++ P
Sbjct: 64 GYGFGDCKLRVEYPRSSGSKFSGPAGGGGGGGGPRGRFGPPTRRSEFRVIVTGLPPTGSW 123
Query: 167 RDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDAT 206
+DL+ H G + ++R+ F++ E E A R LD+T
Sbjct: 124 QDLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDST 167
Score = 60 (26.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 21/79 (26%), Positives = 28/79 (35%)
Query: 295 SPDYGRNSSRSPYKK--ERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNN 352
S ++ + + Y + E GR SRS R P GS P YR
Sbjct: 166 STEFRSHQGETAYIRVMEERGTSWGRSRSRSRSRGRYTPPYQSRGSPPPRYRSPPRHMTR 225
Query: 353 GRGPSRSP-YERERPSPEN 370
PSR P + P P +
Sbjct: 226 HSPPSRRPPLQHHSPPPRH 244
Score = 48 (22.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 21/66 (31%), Positives = 25/66 (37%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSP-YKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
+GR RS S R R +P Y S P Y+ + PSR P P H
Sbjct: 189 WGRSRSRSR-SRGRYTPPYQSRGSPPPRYRSPPRHMTRHSPPSRRP-------PLQHHSP 240
Query: 339 SPSPYR 344
P YR
Sbjct: 241 PPRHYR 246
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 133 (51.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 113 EFGRKGRRLRVEWTK 127
++ G RLRVE+ +
Sbjct: 77 DYD--GYRLRVEFPR 89
Score = 76 (31.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENG--HGSSPSP 342
SP YGR+ SRS + R+ + R S SP RR RGSP H S SP
Sbjct: 198 SPSYGRSRSRSR-SRSRSR-SNSRSRSYSP-RRSRGSPRYSPRHSRSRSP 244
Score = 60 (26.2 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 282 RVRSPSPYRRDRGSPDYG-RNS-SRSP 306
R RS SP RR RGSP Y R+S SRSP
Sbjct: 219 RSRSYSP-RRSRGSPRYSPRHSRSRSP 244
Score = 56 (24.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRSP 360
+GR SRS R R S N S SP R +G P SP + R SRSP
Sbjct: 201 YGRSRSRSR-SRSR-SRSNSRSRSYSPRRSRGSPRYSPRHSR--SRSP 244
Score = 46 (21.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 330 GSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
G +G S S R S +N R S SP R R SP
Sbjct: 195 GPRSPSYGRSRSRSRSRSRSRSNSRSRSYSP-RRSRGSP 232
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 196 PR-SPSYGRSRSRSRSRSRSRS 216
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 172 (65.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 78/344 (22%), Positives = 126/344 (36%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKEL 60
Query: 115 GRKGRRLRVEWTKHEX------XXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYH 163
G R+ VE + T+ R P +T + + +
Sbjct: 61 C--GERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 164 TRT--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS- 217
+R +DL+ G++ + R N +++ D RALD + +++ R I
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
Query: 218 VEYAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXX 276
+E R R +G
Sbjct: 179 IEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRS 238
Query: 277 XXDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG------ 330
R +S S + DRGS + R+ S+ Y K R+ R SRSP +G
Sbjct: 239 KGRKSRSKSKSKPKSDRGSHSHSRSRSKDKYGKSRS-----RSRSRSPKENGKGDIKSKS 293
Query: 331 ---SPENGHGSSPSPYRKGK---PSPNNG-RGPSRSPYERERPS 367
S H P+P K + P P R SRS R R S
Sbjct: 294 RSRSQSRSHSPLPAPPSKARSMSPPPKRASRSRSRSR-SRSRSS 336
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 119 (46.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 90 (36.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 35/89 (39%), Positives = 39/89 (43%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGHGSSP 340
R RS SP RR R S R+ S S + +I R PSRS R R P + S
Sbjct: 154 RSRSASP-RRSR-SISLRRSRSASLRRSRSGSIKGSRSPSRSRSRSRSISRPRSSRSKSR 211
Query: 341 SPYRKGKPSPNNGRGPSRSPYERERPSPE 369
SP SP R PS SP R SPE
Sbjct: 212 SP------SPKRSRSPSGSP--RRSASPE 232
Score = 74 (31.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQ---EDATRALD 204
+LER F YG + +V I RN FAFV++E EDA R LD
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 68
Score = 65 (27.9 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 33/86 (38%), Positives = 40/86 (46%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S + R RG Y R+ SRS ++ R+A R S S RR R + S S
Sbjct: 129 RSRSRS-HSRSRGRR-YSRSRSRSRGRRSRSASPR-RSRSIS-LRRSRSASLR---RSRS 181
Query: 342 PYRKGKPSPNNGRGPSRSPYERERPS 367
KG SP+ R SRS R R S
Sbjct: 182 GSIKGSRSPSRSRSRSRS-ISRPRSS 206
Score = 57 (25.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 22/49 (44%), Positives = 25/49 (51%)
Query: 284 RSPSPYR-RDRG--SPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRD 328
RSPS R R R P R+ SRSP K+ R+ G R S SP R D
Sbjct: 188 RSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRR-SASPERMD 235
Score = 55 (24.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHG-RGPSRSPYRRDRGSPENGHGSSP 340
R RS S R GS R+ SRS + + R SRSP + SP S
Sbjct: 170 RSRSASLRRSRSGSIKGSRSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSA 229
Query: 341 SPYR 344
SP R
Sbjct: 230 SPER 233
Score = 54 (24.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 27/105 (25%), Positives = 31/105 (29%)
Query: 307 YKKERAAIGHGRGPSRSP---YRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS----RS 359
Y + R + R SRS Y R R S SP R S R S RS
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRS 181
Query: 360 PYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSP 404
+ SP + R PSP P SP
Sbjct: 182 GSIKGSRSPSRSRSRSRSISRPRSSRSKS-RSPSPKRSRSPSGSP 225
Score = 50 (22.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 28/104 (26%), Positives = 33/104 (31%)
Query: 325 YRRDRGSPENGHGSSPSPYRKGKPSPNNGRGP-SRSPYERERPSPENXXXXXXXXXXXXX 383
Y R R S S S R+ S + RG SRS R S
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRS 181
Query: 384 XXXDNGRVPSPN-----SMPEPRDSPGYDGADSPINERYRSRSP 422
R PS + S+ PR S + SP R S SP
Sbjct: 182 GSIKGSRSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSP 225
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 114 (45.2 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 71 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
+L LF YG V + FAF++M++ +A DAI+GLD TEF +G+R+ V+ +K
Sbjct: 92 ELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEF--QGKRIHVQISK 146
Score = 104 (41.7 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL 109
M IF GN A +L+ LF +YG V + FAF++MDD + A AI+ L
Sbjct: 1 MVKIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNL 55
Score = 88 (36.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ N P +L+ F YG + I +NFAFV + ++ AT+A+ ++ KL
Sbjct: 4 IFIGNL-PQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHG 62
Query: 214 RVISVE 219
I+VE
Sbjct: 63 TPINVE 68
Score = 84 (34.6 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 38/139 (27%), Positives = 44/139 (31%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPY-----KKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R+ Y R R DY PY + I P S RDR P G+G
Sbjct: 206 RAAPAYERQRDVVDYYEKYRARPYGVAYDDRRPGGIPPPPPPPSSAIMRDR-MP--GNGL 262
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMP 398
P R P P + RSP R P+P R P S+P
Sbjct: 263 DPYERRPLPPPPASFYARDRSPIRRAPPAPPAPAGNGYSYERSRLSPVSMSRAPM-YSVP 321
Query: 399 EPRDSPGYDGADSPINERY 417
PRD A P RY
Sbjct: 322 RPRDPYADRAAPPPPPARY 340
Score = 65 (27.9 bits), Expect = 2.2e-10, Sum P(3) = 2.2e-10
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 168 DLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219
+L FE YG + I +NFAFV ++A A+ + ++ + I V+
Sbjct: 92 ELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQ 143
Score = 64 (27.6 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 25/73 (34%), Positives = 30/73 (41%)
Query: 303 SRSPYKKERAAIGH---GRGPSRSPYRRDR--GSPENGHGSSPSPYRKGKPSPNNGRGPS 357
S+S + E GH G P R P R G P +G P P P P P
Sbjct: 145 SKSRPRGEEDDYGHPDAGYWPPRYPGERPEPPGYPRGRYGYPPGPPPPPPPPP-----PR 199
Query: 358 RSPY-ERERPSPE 369
RSPY +R P+ E
Sbjct: 200 RSPYPDRAAPAYE 212
Score = 47 (21.6 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 392 PSPNSMPEPRDSPGYDGADSPINERYR 418
P P P PR SP D A +P ER R
Sbjct: 190 PPPPPPPPPRRSPYPDRA-APAYERQR 215
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 170 (64.9 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 73/330 (22%), Positives = 120/330 (36%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL----- 109
M ++ G Y+ R+ D++R F YG++ +D+K+G+ F+ +D RDA+DA+ L
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKEL 60
Query: 110 --DRT--EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTR 165
+R E R RR R ++ P +T F + + +R
Sbjct: 61 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 166 T--RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVIS-VE 219
+DL+ G++ + R N +++ D RALD + +++ R I +E
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 220 YAVRDDDDRR-NGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXX 278
R R +G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R +S S + DRGS R+ S+ Y+K R+ R SRSP +G ++
Sbjct: 241 RKSRSKSKSKPKSDRGSRSRSRSRSKE-YEKSRS---RSRSRSRSPKENGKGDIKS-KSR 295
Query: 339 SPSPYRKGKP---SPNNGRGPSRSPYERER 365
S S R P P+ R S P R
Sbjct: 296 SRSQSRSNSPLPAPPSKARSVSPPPKRASR 325
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 158 (60.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERH 172
++G+ RLRVE+ + TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR---TYGGRGGWPRGGRSGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 173 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDAT 206
G + ++++ V+Y +ED A R LD T
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDET 168
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 130 (50.8 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+E+ F+ YG++ +++K+GF F+ DD RDA+DA+ L+ E
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKE 61
Score = 110 (43.8 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ P H R RD+E+ F+ YG+I + ++ F FV+++ DA A+ N +L
Sbjct: 6 VFIGRLSP-HARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKELCS 64
Query: 214 RVISVEYA 221
+++E+A
Sbjct: 65 ERVTIEHA 72
Score = 70 (29.7 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 297 DYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS-SPSPYRKGKPSPNNGRG 355
D RN SRS + R++ R PSRS +RGS + S S +P +K S +N R
Sbjct: 184 DRKRNRSRSR-SRSRSS-SRSRSPSRSR-SPERGSKRSRSRSLSRTPEKK---STSN-RS 236
Query: 356 PSRSPYERERPS 367
PSRSP + + S
Sbjct: 237 PSRSPTPQRKQS 248
Score = 65 (27.9 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 282 RVRSPSPYRR-DRGSP-DYGRNSSRSPYKKERAAIGHGRGPSRSP 324
R RSPS R +RGS R+ SR+P KK + R PSRSP
Sbjct: 201 RSRSPSRSRSPERGSKRSRSRSLSRTPEKKSTS----NRSPSRSP 241
Score = 60 (26.2 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 24/71 (33%), Positives = 33/71 (46%)
Query: 290 RRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKP 348
+R+R S R+SSRS + + RG RS R +PE S+ SP R P
Sbjct: 186 KRNRSRSRSRSRSSSRS--RSPSRSRSPERGSKRSRSRSLSRTPEKKSTSNRSPSRS--P 241
Query: 349 SPNNGRGPSRS 359
+P + SRS
Sbjct: 242 TPQRKQSRSRS 252
Score = 38 (18.4 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 167 RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223
+DL+ G++ V R ++N V++ D A++ + + L R + + Y
Sbjct: 127 QDLKDLMRKVGEVTFVDAHRTKKNEGVVEFASHSDMKNAIEKLDGTDLNGRKLKL-Y--- 182
Query: 224 DDDDRRN 230
+D +RN
Sbjct: 183 -EDRKRN 188
Score = 37 (18.1 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 390 RVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 424
R S + PE + + + SP +R +SRS A
Sbjct: 219 RSRSLSRTPEKKSTSNRSPSRSPTPQRKQSRSRSA 253
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 132 (51.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y R+ D++R F YGK+ D+K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 1 MPRVYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKEL 60
Query: 115 GRKGRRLRVE 124
G R+ VE
Sbjct: 61 C--GERVIVE 68
Score = 107 (42.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
YH R +D++R F YGK++ ++ + FV++E DA A+ N +L + VE+A
Sbjct: 11 YHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCGERVIVEHA 70
Query: 222 --VRDDDDRRNG 231
R D D G
Sbjct: 71 RGPRRDRDGYGG 82
Score = 79 (32.9 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 27/75 (36%), Positives = 31/75 (41%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SP-ENGHGSSPSPYRKGKP 348
R R R+ SRS K ER + R S S R R SP ENG G + P
Sbjct: 263 RSRTEKSRSRSRSRSKAKSERDSRSRSREKSTSRKSRSRSASPRENGDGERVKSTSRS-P 321
Query: 349 SPNNGRGPSRSPYER 363
SP R SP +R
Sbjct: 322 SPKENRHQLESPRKR 336
Score = 62 (26.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 30/98 (30%), Positives = 39/98 (39%)
Query: 280 YGRVRSPSPYR-RDRGS-PDYGRNSSRSPYKKERAAI--GHGRGPSRSPYRRDRGSPENG 335
+ R RS YR R R S + ++ S+ + R+ R SRS + +R S
Sbjct: 230 HSRSRSGRKYRSRSRSSRKSHSKSHSKKSRSRSRSRTEKSRSRSRSRSKAKSERDSRSRS 289
Query: 336 HGSSPS-PYRKGKPSPN-NGRGPSRSPYERERPSP-EN 370
S S R SP NG G R PSP EN
Sbjct: 290 REKSTSRKSRSRSASPRENGDGERVKSTSRS-PSPKEN 326
Score = 59 (25.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 34/146 (23%), Positives = 47/146 (32%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSR--SPYKKERAAIGHGRGPSRSPYRRDRGSPENG--HG 337
R+ P RR S R+ SR S + R++ R SRS R +G +
Sbjct: 181 RLVEDKPRRRRSYSASRSRSRSRRRSRSRSRRSSRSQSRSRSRSRSRSKHSRSRSGRKYR 240
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSM 397
S RK ++ + SRS R R R S +
Sbjct: 241 SRSRSSRKSHSKSHSKKSRSRS---RSRTEKSRSRSRSRSKAKSERDSRSRSREKSTSRK 297
Query: 398 PEPRD-SPGYDGADSPINERYRSRSP 422
R SP +G + RS SP
Sbjct: 298 SRSRSASPRENGDGERVKSTSRSPSP 323
Score = 58 (25.5 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 23/79 (29%), Positives = 30/79 (37%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSP 340
R RS S + +R S R S S + R+A G R SP+
Sbjct: 272 RSRSRSKAKSERDSRSRSREKSTSRKSRSRSASPRENGDGERVKSTSRSPSPKENRHQLE 331
Query: 341 SPYRKGKPSPNNGRGPSRS 359
SP RK S + + SRS
Sbjct: 332 SP-RKRSASRSRSKSRSRS 349
Score = 53 (23.7 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/54 (35%), Positives = 22/54 (40%)
Query: 310 ERAAIGHGRGPSRSPYRRDRGSPENGHGS-SPSPYRKGKPSPNNGRGPS-RSPY 361
ER + H RGP R R G G G S S Y S + GP R+ Y
Sbjct: 63 ERVIVEHARGPRRD--RDGYGGGYGGFGGRSNSGYSSRSRSGRDKYGPPVRTEY 114
Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 405 GYDGADSPINERYRSRSPPAED 426
GY G N Y SRS D
Sbjct: 83 GYGGFGGRSNSGYSSRSRSGRD 104
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 127 (49.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ D
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 113 EFGRKGRRLRVEWTK 127
++ G RLRVE+ +
Sbjct: 77 DYD--GYRLRVEFPR 89
Score = 78 (32.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPE 333
SP YGR+ SRS + + + R S SP RR RGSP+
Sbjct: 208 SPSYGRSRSRSRSRSRSRSRSNNRSRSYSP-RRSRGSPQ 245
Score = 64 (27.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGKP--SPNNGRGPSRS 359
+GR SRS R S N S SP R +G P SP + R SRS
Sbjct: 211 YGRSRSRSRSRSRSRSRSNNRSRSYSPRRSRGSPQYSPRHSRSRSRS 257
Score = 60 (26.2 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS 305
R RS SP RR RGSP Y SRS
Sbjct: 231 RSRSYSP-RRSRGSPQYSPRHSRS 253
Score = 54 (24.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 331 SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 369
SP G S S R S +N R S SP R R SP+
Sbjct: 208 SPSYGRSRSRSRSRSRSRSRSNNRSRSYSP-RRSRGSPQ 245
Score = 38 (18.4 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 400 PRDSPGYDGADSPINERYRSRS 421
PR SP Y + S R RSRS
Sbjct: 206 PR-SPSYGRSRSRSRSRSRSRS 226
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 130 (50.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
+F GN DL+ LF+ +GKV D G+AF++M+++ DA AI L T F K
Sbjct: 85 VFVGNLSSMCTTEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEALHGTSF--K 142
Query: 118 GRRLRVEWTK 127
GR L VE +K
Sbjct: 143 GRPLSVELSK 152
Score = 117 (46.2 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
+F GN D Q +L +F YG+V + FAF+++ E AE AIR L+ EF K
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQVVSCSVLRQFAFVHLQGEGAAERAIRELNGREF--K 66
Query: 118 GRRLRVE 124
GR L VE
Sbjct: 67 GRNLVVE 73
Score = 100 (40.3 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 149 RP--SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP S +FV N T T DL+ F+ +GK++ + +AFV E +EDA +A++A
Sbjct: 78 RPLHSTKVFVGNLSSMCT-TEDLQELFQTFGKVLECDKVKGYAFVHMENKEDALQAIEAL 136
Query: 207 NMSKLTDRVISVE 219
+ + R +SVE
Sbjct: 137 HGTSFKGRPLSVE 149
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 156 (60.0 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERH 172
++G+ RLRVE+ + TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR---AYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 173 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDAT 206
G + ++++ V+Y +ED A R LD T
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDT 168
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 120 (47.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 86 (35.3 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 119 (46.9 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 83 (34.3 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 34/89 (38%), Positives = 38/89 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRGSPENGHGSSP 340
R RS SP RR R S R+ S S + +I R SRS R R P + S
Sbjct: 154 RSRSASP-RRSR-SVSLRRSRSASLRRSRSGSIKGSRSRSRSRSRSRSLSRPRSSRSKSR 211
Query: 341 SPYRKGKPSPNNGRGPSRSPYERERPSPE 369
SP SP R PS SP R SPE
Sbjct: 212 SP------SPKRSRSPSGSP--RRSASPE 232
Score = 74 (31.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQ---EDATRALD 204
+LER F YG + +V I RN FAFV++E EDA R LD
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 68
Score = 56 (24.8 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 25/75 (33%), Positives = 30/75 (40%)
Query: 289 YRRDRGSPDYGRNSSRSP---YKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYR 344
Y R R S R+ SRS Y + R+ R S SP RR R S +S R
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASP-RRSRSVSLRRSRSASLRRSR 180
Query: 345 KGKPSPNNGRGPSRS 359
G + R SRS
Sbjct: 181 SGSIKGSRSRSRSRS 195
Score = 55 (24.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHG-RGPSRSPYRRDRGSPENGHGSSP 340
R RS S R GS R+ SRS + + R SRSP + SP S
Sbjct: 170 RSRSASLRRSRSGSIKGSRSRSRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSPRRSA 229
Query: 341 SPYR 344
SP R
Sbjct: 230 SPER 233
Score = 53 (23.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 21/49 (42%), Positives = 24/49 (48%)
Query: 282 RVRSPSPYR-RDRGSPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRD 328
R RS S R R P R+ SRSP K+ R+ G R S SP R D
Sbjct: 188 RSRSRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSPRR-SASPERVD 235
Score = 44 (20.5 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 31/122 (25%), Positives = 34/122 (27%)
Query: 307 YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS--RSPYERE 364
Y + R + R SRS RR S G R SP R S RS
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-----RSRSASPRRSRSVSLRRSRSASL 176
Query: 365 RPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 424
R S R P S SP + SP RS SP
Sbjct: 177 RRSRSGSIKGSRSRSRSRSRSRSLSR---PRSSRSKSRSPSPKRSRSPSGSPRRSASPER 233
Query: 425 ED 426
D
Sbjct: 234 VD 235
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 107 (42.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGALLD--GRELRVQMARY 92
Score = 96 (38.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 30/92 (32%), Positives = 39/92 (42%)
Query: 280 YGRVRSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
+ R RS S R R R Y R+ SRS Y + R+ R +R+P R SP
Sbjct: 127 HSRSRSRSRSRSRSRSRSRYSRSRSRS-YSRSRSR-SRSRSKTRTPRRSKSKSPSRSRSR 184
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERP-SPE 369
S S +P + +G R RP SPE
Sbjct: 185 SKSKSHSRSRTPRSNKGSKSRSRSRSRPKSPE 216
Score = 86 (35.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/87 (35%), Positives = 39/87 (44%)
Query: 280 YGR-VRSPSPYRRDRG-----SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPE 333
YGR RS SP RR S R+ SRS Y + R+ + R SRS R +P
Sbjct: 113 YGRRSRSRSPRRRKHSRSRSRSRSRSRSRSRSRYSRSRSR-SYSRSRSRSRSRSKTRTPR 171
Query: 334 NGHGSSPSPYRKGKPSPNNGRGPSRSP 360
SPS R S ++ R SR+P
Sbjct: 172 RSKSKSPSRSRSRSKSKSHSR--SRTP 196
Score = 82 (33.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGALLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 56 (24.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 29/113 (25%), Positives = 39/113 (34%)
Query: 315 GHGR-GPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXX 373
G+GR SRSP RR + S + + S + R SRS R R S
Sbjct: 112 GYGRRSRSRSPRRRKHSRSRSRSRSRSRSRSRSRYSRSRSRSYSRSR-SRSR-SRSKTRT 169
Query: 374 XXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 426
+ S + PR + G + S R R +SP A D
Sbjct: 170 PRRSKSKSPSRSRSRSKSKSHSRSRTPRSNKG---SKSRSRSRSRPKSPEATD 219
Score = 52 (23.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 26/106 (24%), Positives = 37/106 (34%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P + Y R RG+P +G Y G+ S R P R + R R +
Sbjct: 92 YGRPPD-AHYSR-RGAPPRRYGG----Y--GRRS--RSRSPRRRKHSRSRSRSRSRSRSR 141
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRS 421
R S + +P + SP R RS+S
Sbjct: 142 SRSRYSRSRSRSYSRSRSRSRSRSKTRTPRRSKSKSPSRSRSRSKS 187
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 155 (59.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERH 172
++G+ RLRVE+ + TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR---TYGSRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 173 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDAT 206
G + ++++ V+Y +ED A R LD T
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDT 168
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 125 (49.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 34 YVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G 90
+V F L + E+ ++ GN A + +LER F YG + V + G
Sbjct: 16 FVFSFSSFERSLWLWGGELESKTKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPG 75
Query: 91 FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124
FAF+ +D RDAEDA+RGLD G R+RVE
Sbjct: 76 FAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVE 107
Score = 78 (32.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 37/96 (38%), Positives = 42/96 (43%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRNSS--RSPYKK-ERAAIGHGRGPSRSPYRRDRGSPENG 335
Y R RS S RR R SP R+ S RS R+ G +G SR R R +
Sbjct: 173 YSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIKG-SRYFQSRSRSRSRSR 231
Query: 336 HGSSPSPYR-KGK-PSPNNGRGPSRSPYERERPSPE 369
S P R K + PSP R PS SP R SPE
Sbjct: 232 SLSRPRSSRSKSRSPSPKRSRSPSGSP--RRSASPE 265
Score = 74 (31.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQ---EDATRALD 204
+LER F YG + +V I RN FAFV++E EDA R LD
Sbjct: 53 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 95
Score = 62 (26.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 30/85 (35%), Positives = 34/85 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGR---GPSRSPYR-RDRGSPENGHG 337
R RS SP RR R S R+ S S + +I R SRS R R P +
Sbjct: 184 RSRSASP-RRSR-SVSLRRSRSASLRRSRSGSIKGSRYFQSRSRSRSRSRSLSRPRSSRS 241
Query: 338 SS--PSPYRKGKPS--PNNGRGPSR 358
S PSP R PS P P R
Sbjct: 242 KSRSPSPKRSRSPSGSPRRSASPER 266
Score = 53 (23.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 280 YGRVRSPSPYR-RDRGSPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRD 328
Y + RS S R R P R+ SRSP K+ R+ G R S SP R D
Sbjct: 219 YFQSRSRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSPRR-SASPERVD 268
Score = 49 (22.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 29/116 (25%), Positives = 37/116 (31%)
Query: 307 YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERP 366
Y + R + + R SRS + R RG + S R SP R S R R
Sbjct: 149 YSRRRRNLKN-RSRSRS-HSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVS---LRRSRS 203
Query: 367 SPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSP 422
+ R S S+ PR S + SP R S SP
Sbjct: 204 ASLRRSRSGSIKGSRYFQSRSRSRSRS-RSLSRPRSSRSKSRSPSPKRSRSPSGSP 258
Score = 46 (21.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 25/106 (23%), Positives = 30/106 (28%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGKPSPNNGRGPSR 358
+N SRS + R SRS RR R SP S R +
Sbjct: 157 KNRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIKG 216
Query: 359 SPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSP 404
S Y + R + R PSP P SP
Sbjct: 217 SRYFQSR----SRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSP 258
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 155 (59.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G +
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERH 172
++G+ RLRVE+ + TR S +++ P +DL+ H
Sbjct: 77 DYGQC--RLRVEFPR---TYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 131
Query: 173 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDAT 206
G + ++++ V+Y +ED A R LD T
Sbjct: 132 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDT 169
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 154 (59.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERH 172
++G+ RLRVE+ + TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR---TYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 173 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDAT 206
G + ++++ V+Y +ED A R LD T
Sbjct: 131 MREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDT 168
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 101 (40.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 48 AAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDE 99
AA ++ + + N Y +DL R F RYG + D+ +S GF F+ +
Sbjct: 11 AAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
Query: 100 RDAEDAIRGLDRTEFGR--KGRRLRVEWTKHE 129
RDAE A LDRT+ G+ GR LRV K++
Sbjct: 71 RDAEHA---LDRTD-GKLVDGRELRVTLAKYD 98
Score = 97 (39.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 37/106 (34%), Positives = 44/106 (41%)
Query: 286 PSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRK 345
PS R RG GR SRSP ++ R+ + R SRSP RR R S PS R+
Sbjct: 100 PSDERGGRGGGG-GRRRSRSPRRRSRSP-RYSR--SRSP-RRSRSRTR----SPPSRDRR 150
Query: 346 GKPSP-NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGR 390
P +N R SRSP RE SP+ N R
Sbjct: 151 DSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNSR 196
Score = 94 (38.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 32/80 (40%), Positives = 38/80 (47%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T DL R FE YG I V I R+ F FV++ + DA ALD T+ KL D
Sbjct: 28 YQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVD 86
Query: 214 -RVISVEYAVRD-DDDRRNG 231
R + V A D D R G
Sbjct: 87 GRELRVTLAKYDRPSDERGG 106
Score = 90 (36.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 33/86 (38%), Positives = 40/86 (46%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSS--------RSPYKKERAAI----GHGRGPSRSPYRRD 328
GR RS SP RR R SP Y R+ S RSP ++R + R SRSP R+
Sbjct: 112 GRRRSRSPRRRSR-SPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPRE 170
Query: 329 RGSPENGHGSSPSPYRKGKPSPNNGR 354
GSP+ S S R S +N R
Sbjct: 171 DGSPKERRSRSRSASRSPSRSRSNSR 196
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 32/87 (36%), Positives = 35/87 (40%)
Query: 340 PSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPE 399
PS R G+ GR SRSP R R SP R SP S +
Sbjct: 100 PSDERGGRGG-GGGRRRSRSPRRRSR-SPR--------YSRSRSPRRSRSRTRSPPSR-D 148
Query: 400 PRDSPGYDGADSPINERYRSRSPPAED 426
RDSP D D N R RSRSPP +
Sbjct: 149 RRDSP--DRRD---NSRSRSRSPPPRE 170
Score = 60 (26.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 33/109 (30%), Positives = 41/109 (37%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER-PSPENXXX 373
G G G R RR R SP SP Y + + SP R +RSP R+R SP+
Sbjct: 106 GRGGGGGR---RRSR-SPRR-RSRSPR-YSRSR-SPRRSRSRTRSPPSRDRRDSPDRRDN 158
Query: 374 XXXXXXXXXXXXXDNGRVPSP--NSMPEPRDSPGYDGADSPINERYRSR 420
R P P + P+ R S + SP R SR
Sbjct: 159 SRS-----------RSRSPPPREDGSPKERRSRSRSASRSPSRSRSNSR 196
Score = 55 (24.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS SP R+ GSP R+ SRS
Sbjct: 157 DNSRSRSRSPPPREDGSPKERRSRSRS 183
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 101 (40.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 48 AAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDE 99
AA ++ + + N Y +DL R F RYG + D+ +S GF F+ +
Sbjct: 11 AAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70
Query: 100 RDAEDAIRGLDRTEFGR--KGRRLRVEWTKHE 129
RDAE A LDRT+ G+ GR LRV K++
Sbjct: 71 RDAEHA---LDRTD-GKLVDGRELRVTLAKYD 98
Score = 97 (39.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 37/106 (34%), Positives = 44/106 (41%)
Query: 286 PSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRK 345
PS R RG GR SRSP ++ R+ + R SRSP RR R S PS R+
Sbjct: 100 PSDERGGRGGGG-GRRRSRSPRRRSRSP-RYSR--SRSP-RRSRSRTR----SPPSRDRR 150
Query: 346 GKPSP-NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGR 390
P +N R SRSP RE SP+ N R
Sbjct: 151 DSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNSR 196
Score = 94 (38.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 32/80 (40%), Positives = 38/80 (47%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T DL R FE YG I V I R+ F FV++ + DA ALD T+ KL D
Sbjct: 28 YQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTD-GKLVD 86
Query: 214 -RVISVEYAVRD-DDDRRNG 231
R + V A D D R G
Sbjct: 87 GRELRVTLAKYDRPSDERGG 106
Score = 90 (36.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 33/86 (38%), Positives = 40/86 (46%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSS--------RSPYKKERAAI----GHGRGPSRSPYRRD 328
GR RS SP RR R SP Y R+ S RSP ++R + R SRSP R+
Sbjct: 112 GRRRSRSPRRRSR-SPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPRE 170
Query: 329 RGSPENGHGSSPSPYRKGKPSPNNGR 354
GSP+ S S R S +N R
Sbjct: 171 DGSPKERRSRSRSASRSPSRSRSNSR 196
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 32/87 (36%), Positives = 35/87 (40%)
Query: 340 PSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPE 399
PS R G+ GR SRSP R R SP R SP S +
Sbjct: 100 PSDERGGRGG-GGGRRRSRSPRRRSR-SPR--------YSRSRSPRRSRSRTRSPPSR-D 148
Query: 400 PRDSPGYDGADSPINERYRSRSPPAED 426
RDSP D D N R RSRSPP +
Sbjct: 149 RRDSP--DRRD---NSRSRSRSPPPRE 170
Score = 60 (26.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 33/109 (30%), Positives = 41/109 (37%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER-PSPENXXX 373
G G G R RR R SP SP Y + + SP R +RSP R+R SP+
Sbjct: 106 GRGGGGGR---RRSR-SPRR-RSRSPR-YSRSR-SPRRSRSRTRSPPSRDRRDSPDRRDN 158
Query: 374 XXXXXXXXXXXXXDNGRVPSP--NSMPEPRDSPGYDGADSPINERYRSR 420
R P P + P+ R S + SP R SR
Sbjct: 159 SRS-----------RSRSPPPREDGSPKERRSRSRSASRSPSRSRSNSR 196
Score = 55 (24.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS SP R+ GSP R+ SRS
Sbjct: 157 DNSRSRSRSPPPREDGSPKERRSRSRS 183
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 119 (46.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 80 (33.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 37/97 (38%), Positives = 43/97 (44%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRN----SSRSP-YKKERAAIGHGRGPSRSPYR-RDRGSP 332
Y R RS S RR R SP R+ SRS ++ R+ G +SP R R R
Sbjct: 143 YSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRS 202
Query: 333 ENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 369
+ SS S R PSP R PS SP R SPE
Sbjct: 203 ISRPRSSRSKSRS--PSPKRSRSPSGSP--RRSASPE 235
Score = 74 (31.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQ---EDATRALD 204
+LER F YG + +V I RN FAFV++E EDA R LD
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 68
Score = 69 (29.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 31/85 (36%), Positives = 35/85 (41%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGR---GPSRSPYR-RDRGSPENGHG 337
R RS SP RR R S R+ S S + +I R PSRS R R P +
Sbjct: 154 RSRSASP-RRSR-SISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRS 211
Query: 338 SS--PSPYRKGKPS--PNNGRGPSR 358
S PSP R PS P P R
Sbjct: 212 KSRSPSPKRSRSPSGSPRRSASPER 236
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/49 (42%), Positives = 25/49 (51%)
Query: 284 RSPSPYR-RDRG--SPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRD 328
+SPS R R R P R+ SRSP K+ R+ G R S SP R D
Sbjct: 191 QSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRR-SASPERMD 238
Score = 50 (22.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 33/117 (28%), Positives = 38/117 (32%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGK 347
Y R R S R+ SRS ++ + R SRS RR R SP S S R
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRR------YSRSRSRSRGRRSRSASPRRSR--SISLRRSRS 173
Query: 348 PSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSP 404
S R S R SP + R PSP P SP
Sbjct: 174 ASLRRSRSGSIKG-SRYFQSPSRSRSRSRSISRPRSSRSKS-RSPSPKRSRSPSGSP 228
Score = 49 (22.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/122 (24%), Positives = 35/122 (28%)
Query: 307 YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS--RSPYERE 364
Y + R + R SRS RR S G R SP R S RS
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-----RSRSASPRRSRSISLRRSRSASL 176
Query: 365 RPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 424
R S + + P S SP + SP RS SP
Sbjct: 177 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER 236
Query: 425 ED 426
D
Sbjct: 237 MD 238
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 121 (47.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + ++E F +YG + V + GFAF+ +D RDAEDA RGLD T
Sbjct: 13 VYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTRC 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GTRIRVE 80
Score = 42 (19.8 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 17/55 (30%), Positives = 19/55 (34%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
R+ G G G G G GS G+ GR SRSP R R
Sbjct: 85 RSREGRGGGGGGGGGGGGSGGGGRGGGSGARAGGGGRAGDGGGRYRSRSP-RRSR 138
Score = 37 (18.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 416 RYRSRSP 422
RYRSRSP
Sbjct: 128 RYRSRSP 134
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 165 (63.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 67/319 (21%), Positives = 115/319 (36%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M ++ G Y AR+ D+ER F+ YGK+ VD+K+G+ F+ DD RDA+DA+ L+ +
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL 60
Query: 115 GRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR-----PSKTLFVINFDPYHTRT--R 167
G R+ VE + + R P++T + + + +R +
Sbjct: 61 C--GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 168 DLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224
DL+ + G++ + R+N +++ D RAL+ + +++ R I + V D
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL---VED 175
Query: 225 DDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVR 284
R R R
Sbjct: 176 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR 235
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S S R R + R+ S S +R + + + + S G S SP R
Sbjct: 236 SQS---RSRSKKEKSRSRSHSRSADKRRSKSKDQAEEKV-----QNSDNTGKSKSRSPSR 287
Query: 345 KGKPSPNNGRGPSRSPYER 363
S + R R E+
Sbjct: 288 HKSKSKSRSRSQERGVEEK 306
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 153 (58.9 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 49/158 (31%), Positives = 78/158 (49%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G +
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 113 EFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERH 172
++G+ RLRVE+ + TR S +++ P +DL+ H
Sbjct: 76 DYGQC--RLRVEFPR---TYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
Query: 173 FEPYGKIISVRIRRN-FAFVQYEVQED---ATRALDAT 206
G + ++++ V+Y +ED A R LD T
Sbjct: 131 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDT 168
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 119 (46.9 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 78 (32.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 37/96 (38%), Positives = 42/96 (43%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRNSS--RSPYKK-ERAAIGHGRGPSRSPYRRDRGSPENG 335
Y R RS S RR R SP R+ S RS R+ G +G SR R R +
Sbjct: 143 YSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIKG-SRYFQSRSRSRSRSR 201
Query: 336 HGSSPSPYR-KGK-PSPNNGRGPSRSPYERERPSPE 369
S P R K + PSP R PS SP R SPE
Sbjct: 202 SLSRPRSSRSKSRSPSPKRSRSPSGSP--RRSASPE 235
Score = 74 (31.1 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQ---EDATRALD 204
+LER F YG + +V I RN FAFV++E EDA R LD
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 68
Score = 62 (26.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/85 (35%), Positives = 34/85 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGR---GPSRSPYR-RDRGSPENGHG 337
R RS SP RR R S R+ S S + +I R SRS R R P +
Sbjct: 154 RSRSASP-RRSR-SVSLRRSRSASLRRSRSGSIKGSRYFQSRSRSRSRSRSLSRPRSSRS 211
Query: 338 SS--PSPYRKGKPS--PNNGRGPSR 358
S PSP R PS P P R
Sbjct: 212 KSRSPSPKRSRSPSGSPRRSASPER 236
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 280 YGRVRSPSPYR-RDRGSPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRD 328
Y + RS S R R P R+ SRSP K+ R+ G R S SP R D
Sbjct: 189 YFQSRSRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSPRR-SASPERVD 238
Score = 50 (22.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/116 (25%), Positives = 34/116 (29%)
Query: 307 YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERP 366
Y + R + R SRS RR S G R SP R S R R
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-----RSRSASPRRSRSVS---LRRSRS 173
Query: 367 SPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSP 422
+ R S S+ PR S + SP R S SP
Sbjct: 174 ASLRRSRSGSIKGSRYFQSRSRSRSRS-RSLSRPRSSRSKSRSPSPKRSRSPSGSP 228
Score = 48 (22.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 29/117 (24%), Positives = 36/117 (30%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGK 347
Y R R S R+ SRS ++ + R SRS RR R SP S R
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRR------YSRSRSRSRGRRSRSASPRRSRSVSLRRSRSAS 175
Query: 348 PSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSP 404
+ S Y + R + R PSP P SP
Sbjct: 176 LRRSRSGSIKGSRYFQSR----SRSRSRSRSLSRPRSSRSKSRSPSPKRSRSPSGSP 228
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 103 (41.3 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDR 111
M ++ GN + ++E FR +G + V + GFAFI DD RDAEDAIR LD
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLD- 59
Query: 112 TEFGRKGRRLRVEWTK 127
G+ G R+ + TK
Sbjct: 60 ---GKNGWRVELS-TK 71
Score = 91 (37.1 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 36/83 (43%), Positives = 41/83 (49%)
Query: 281 GRVRSPSPYRRDRGSPDY-GRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRG-SPENGHG 337
GR RS S R R SP Y GR+ SRSP + R + +GR P RSP RR SP
Sbjct: 113 GRRRSRS---RSR-SPRYRGRSRSRSP--RYRRSPSYGRSPRDRSPKRRSYSRSPPPARA 166
Query: 338 SSPSPYRKGKPSPNNGRGPSRSP 360
S Y + P P R SRSP
Sbjct: 167 RS---YSRSPPPPRE-RSYSRSP 185
Score = 79 (32.9 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 31/78 (39%), Positives = 39/78 (50%)
Query: 281 GRVRSPSP-YRRDRGSPDYGRNS-SRSPYKKERAAIGHGRGPSRS-PYRRDRGSP-ENGH 336
GR RS SP YRR SP YGR+ RSP +R + P+R+ Y R P E +
Sbjct: 128 GRSRSRSPRYRR---SPSYGRSPRDRSP---KRRSYSRSPPPARARSYSRSPPPPRERSY 181
Query: 337 GSSPS-PY-RKGKPSPNN 352
SP+ P R+ P NN
Sbjct: 182 SRSPAQPANREESPYANN 199
Score = 76 (31.8 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYEVQ---EDATRALDATN 207
++V N DP T R++E F +G + SV + R FAF+ ++ + EDA R LD N
Sbjct: 4 VYVGNLDPRVT-AREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKN 62
Score = 62 (26.9 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 32/127 (25%), Positives = 40/127 (31%)
Query: 299 GRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSR 358
G+N R +A G GR S + E GH + R G +GR SR
Sbjct: 60 GKNGWRVELST-KAGSGRGRDRSGGSDMKCYECGEPGHFARECRLRIGSGGLGSGRRRSR 118
Query: 359 SPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSM---PEPRDSPGYDGADSPINE 415
S R + R P S P P + Y + P E
Sbjct: 119 SRSRSPRYRGRSRSRSPRYRRSPSYGRSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRE 178
Query: 416 RYRSRSP 422
R SRSP
Sbjct: 179 RSYSRSP 185
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 136 (52.9 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/77 (31%), Positives = 32/77 (41%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRS--PYRRDRGSPENGHGSSPSPYRKGKPSPN 351
GS + R+ SRS + ++ R SRS Y R R S S S R P +
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSR-SRSRSRSKSRSVSRSPVPEKS 237
Query: 352 NGRGPS---RSPYERER 365
RG S +SP +R
Sbjct: 238 QKRGSSSRSKSPASVDR 254
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 282 RVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R RS S R R R Y R+ SRS + + ++ P +S + RGS +
Sbjct: 193 RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSKSRSVSRSPVPEKS---QKRGS--SSRSK 247
Query: 339 SPSPYRKGKPSPNNGRGPSRS 359
SP+ + + S + R SRS
Sbjct: 248 SPASVDRQR-SRSRSRSRSRS 267
Score = 39 (18.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
Score = 37 (18.1 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 284 RSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
RSP P + + RGS SSRS K A++ R SRS R R S ++G+
Sbjct: 230 RSPVPEKSQKRGS------SSRS---KSPASVDRQRSRSRSR-SRSR-SVDSGN 272
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 136 (52.9 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/77 (31%), Positives = 32/77 (41%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRS--PYRRDRGSPENGHGSSPSPYRKGKPSPN 351
GS + R+ SRS + ++ R SRS Y R R S S S R P +
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSR-SRSRSRSKSRSVSRSPVPEKS 237
Query: 352 NGRGPS---RSPYERER 365
RG S +SP +R
Sbjct: 238 QKRGSSSRSKSPASVDR 254
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 282 RVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R RS S R R R Y R+ SRS + + ++ P +S + RGS +
Sbjct: 193 RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSKSRSVSRSPVPEKS---QKRGS--SSRSK 247
Query: 339 SPSPYRKGKPSPNNGRGPSRS 359
SP+ + + S + R SRS
Sbjct: 248 SPASVDRQR-SRSRSRSRSRS 267
Score = 39 (18.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
Score = 37 (18.1 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 284 RSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
RSP P + + RGS SSRS K A++ R SRS R R S ++G+
Sbjct: 230 RSPVPEKSQKRGS------SSRS---KSPASVDRQRSRSRSR-SRSR-SVDSGN 272
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 136 (52.9 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 25/79 (31%), Positives = 30/79 (37%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERA-AIGHGRGPSRSPYRRDRGSPENGHGSSP 340
R RS S R S R+ SR Y + R+ + R SRS R PE
Sbjct: 187 RSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP--VPEKSQKRGS 244
Query: 341 SPYRKGKPSPNNGRGPSRS 359
S K S + R SRS
Sbjct: 245 SSRSKSPASVDRQRSRSRS 263
Score = 59 (25.8 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 24/78 (30%), Positives = 32/78 (41%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRS--PYRRDRG-SPENGHGSSPSPYRKGKPSP 350
GS + R+ SRS + ++ R SRS Y R R S S S R P
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
Query: 351 NNGRGPS---RSPYERER 365
+ RG S +SP +R
Sbjct: 239 SQKRGSSSRSKSPASVDR 256
Score = 39 (18.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 136 (52.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 58 (25.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 22/74 (29%), Positives = 29/74 (39%)
Query: 282 RVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R RS S R R R S Y R+ SRS + + ++ P +S + RGS
Sbjct: 193 RTRSSSRSRSRSRSRRSKSYSRSRSRSRSRSKSRSVSRSPVPEKS---QKRGSSSRSRSR 249
Query: 339 SPSPYRKGKPSPNN 352
S S R N
Sbjct: 250 SRSRSRSRSVDSGN 263
Score = 58 (25.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 22/74 (29%), Positives = 28/74 (37%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSR--SPYRRDRGSPENGHGSSPSPYRKGKPSPN 351
GS + R+ SRS + ++ R SR Y R R S S S R P +
Sbjct: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRRSKSYSRSR-SRSRSRSKSRSVSRSPVPEKS 237
Query: 352 NGRGPSRSPYERER 365
RG S R R
Sbjct: 238 QKRGSSSRSRSRSR 251
Score = 39 (18.8 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 86 (35.3 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 86 (35.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 86 (35.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 86 (35.3 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKTSTKLHVGNISPTCTN-KELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 111 (44.1 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 41/176 (23%), Positives = 69/176 (39%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
+F G A + D+ F+ YG++ + +GF F+ ++D RDA D + EF
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF--M 63
Query: 118 GRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG 177
G R+ VE + E R L V N +DL+ G
Sbjct: 64 GSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSE-DVSWQDLKDVMRKAG 122
Query: 178 K-IISVRIRRN--FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRN 230
+ + R N V++ +ED AL + N + + +++ R+D D N
Sbjct: 123 EPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTL----REDPDAAN 174
Score = 92 (37.4 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 42/138 (30%), Positives = 51/138 (36%)
Query: 282 RVRSPSP-----YRRD-RGSPDYGRNSSRSPYKKER--AAIGHGRGPSRSPYRRDRGSPE 333
R RS SP YR D R DY R++ R ER A G R +R YRR G +
Sbjct: 183 RFRSRSPPARRRYRDDYRRGGDYRRDAYRPGRDDERRYAPRGEYRRNNRDEYRR--GGRD 240
Query: 334 NGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPS 393
+S S YR+ P + R P Y R R PS
Sbjct: 241 EYRRNSRSDYRR--PHDDEYRRPRGDEYRPGRDEYRRSRDDGRPSHDDEYRRDAYSRSPS 298
Query: 394 PNSMPEPRDSPGYDGADS 411
P E SP Y+G+ S
Sbjct: 299 PRRDREENRSPAYEGSKS 316
Score = 75 (31.5 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 151 SKT-LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
S+T LFV P TR D+ F+ YG+I+ ++ F FV EV EDA A D N
Sbjct: 2 SETRLFVGRIPPQATR-EDMMDFFKGYGQILDCKLMNGFGFV--EV-EDARDARDIVN 55
Score = 57 (25.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 401 RDSPGYDGADSPINE---RYRSRSPPA 424
R+ P D A+ P+ E R+RSRSPPA
Sbjct: 167 REDP--DAANEPLPEVPSRFRSRSPPA 191
Score = 46 (21.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 284 RSPSPYRRDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPE 333
RSPSP RRDR SP Y S+S Y A P+ S Y + S E
Sbjct: 295 RSPSP-RRDREENRSPAY--EGSKS-YSAAPEASMESSAPTES-YDKPAASEE 342
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 111 (44.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +S+LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 11 VYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELD---- 66
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 67 GRTLCGCRVRVELSNGE 83
Score = 77 (32.2 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224
+LER F YG + SV + RN FAFV++E DAT A+ + L + VE + +
Sbjct: 24 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNGE 83
Query: 225 DDDRRNG 231
R G
Sbjct: 84 KRTRSRG 90
Score = 69 (29.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 23/72 (31%), Positives = 28/72 (38%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGK 347
R RG P R Y++ + R P R + R R S E S S R K
Sbjct: 87 RSRGPPPSWNRRPRDDYRRRSSPPQRRRSPRRRSFSRSRSRSFSRERRRERSLSRERNHK 146
Query: 348 PSPNNGRGPSRS 359
PS + R SRS
Sbjct: 147 PSRSFSRSRSRS 158
Score = 63 (27.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 26/77 (33%), Positives = 30/77 (38%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRS---PYRRDRG-SPENGHG 337
R R P P R DY R SS ++ R SRS RR+R S E H
Sbjct: 87 RSRGPPPSWNRRPRDDYRRRSSPPQRRRSPRRRSFSRSRSRSFSRERRRERSLSRERNHK 146
Query: 338 SSPSPYRKGKPSPNNGR 354
S S R S +N R
Sbjct: 147 PSRSFSRSRSRSRSNDR 163
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 327 RDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
R RG P + + YR+ P R P R + R R
Sbjct: 87 RSRGPPPSWNRRPRDDYRRRSSPPQRRRSPRRRSFSRSR 125
Score = 53 (23.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRG--PSRSPYRRDR 329
DY R SP RR + R+ SRS + +ER ++ R PSRS + R R
Sbjct: 102 DYRRRSSPPQRRRSPRRRSFSRSRSRS-FSRERRRERSLSRERNHKPSRS-FSRSR 155
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+ V+
Sbjct: 141 MHVQ 144
Score = 117 (46.2 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T ++L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMHVQ 144
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 109 (43.4 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ G+ A + +LER F YG + V + GFAF+ +D RDAEDA++G+D
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVL 75
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 76 C--GARVRVE 83
Score = 88 (36.0 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 35/102 (34%), Positives = 44/102 (43%)
Query: 282 RVRSPS-PYRRDR-GSPDYGRNSSRSPYKKERAAIGHGRGP-----SRSPYRRDRGSPEN 334
R RSPS RR R GSP GR+ SRSP + R+ + + P SR+P RD S
Sbjct: 157 RYRSPSYSKRRSRSGSP--GRSRSRSPGGRSRSPVRRSKSPVRRSRSRTPLHRDSRSRSR 214
Query: 335 GHGSSPSPYRKGKPSPNNGRG-------PSRSPYERERPSPE 369
S R S + R SRS R P+P+
Sbjct: 215 SRSGSRQRDRSVSRSRSRSRSISHKKDSHSRSASPRRSPTPD 256
Score = 84 (34.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 39/124 (31%), Positives = 45/124 (36%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSP-YKKERAAIGH-GRGPSRSPYRRDRGSPENGHGSS 339
R RS S RR R RSP Y K R+ G GR SRSP R R SP S
Sbjct: 137 RSRSRSRGRRYRSRSRSNERRYRSPSYSKRRSRSGSPGRSRSRSPGGRSR-SPVR---RS 192
Query: 340 PSPYRKGK---PSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNS 396
SP R+ + P + R SRS R + + R SP
Sbjct: 193 KSPVRRSRSRTPLHRDSRSRSRSR-SGSRQRDRSVSRSRSRSRSISHKKDSHSRSASPRR 251
Query: 397 MPEP 400
P P
Sbjct: 252 SPTP 255
Score = 78 (32.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNMSKLTDRVISVE 219
+LER F YG + SV + RN FAFV+YE DA A+ + L + VE
Sbjct: 29 ELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKVLCGARVRVE 83
Score = 77 (32.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 30/84 (35%), Positives = 36/84 (42%)
Query: 290 RRDR-GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP-----SPY 343
RR R GS R+ R + R+ R PS S R GSP SP SP
Sbjct: 130 RRSRSGSRSRSRSRGRRYRSRSRSNERRYRSPSYSKRRSRSGSPGRSRSRSPGGRSRSPV 189
Query: 344 RKGKPSPNNGRGPSRSPYERERPS 367
R+ K SP R SR+P R+ S
Sbjct: 190 RRSK-SPVR-RSRSRTPLHRDSRS 211
Score = 62 (26.9 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 25/73 (34%), Positives = 32/73 (43%)
Query: 298 YGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSP-YRKGKP-SPNNGRG 355
Y + R ++ R + R SRS RR R + SP Y K + S + GR
Sbjct: 117 YAYDCYRFSKRRSRRSRSGSRSRSRSRGRRYRSRSRSNERRYRSPSYSKRRSRSGSPGRS 176
Query: 356 PSRSPYERERPSP 368
SRSP R R SP
Sbjct: 177 RSRSPGGRSR-SP 188
>DICTYBASE|DDB_G0284245 [details] [associations]
symbol:DDB_G0284245 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0284245 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 EMBL:AAFI02000064 ProtClustDB:CLSZ2846728
RefSeq:XP_638672.1 ProteinModelPortal:Q54PX3 PRIDE:Q54PX3
EnsemblProtists:DDB0233309 GeneID:8624501 KEGG:ddi:DDB_G0284245
eggNOG:KOG0106 InParanoid:Q54PX3 OMA:DDAINSE Uniprot:Q54PX3
Length = 365
Score = 131 (51.2 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M I+ G +DAR+ DL F ++GK+DR++++ GF FI D+ A+DAI + F
Sbjct: 1 MSKIYIGRLNHDAREDDLYGRFSKFGKIDRLELRKGFCFIEYFDKASADDAINSEHKQNF 60
Query: 115 GRKGRRLRVE 124
GR + VE
Sbjct: 61 --LGRNIIVE 68
Score = 69 (29.3 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 282 RVRSPSP---YRRDRGSPDYG-RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH- 336
R RSPS YRR+R G RN + + + G + + + + + NG+
Sbjct: 266 RNRSPSKENRYRRERDRSSSGTRNGNGRDRSRSTSRNGLNKPNNNNNNNNNNNNKSNGNR 325
Query: 337 ---GS---SPSPYRKGKPSPNNGRGPSRSPYERERPS 367
GS +PSP R G S NG+ ++ E E+PS
Sbjct: 326 SRSGSRNRNPSPDRLGNNSAINGK---KNGLETEKPS 359
Score = 58 (25.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 35/148 (23%), Positives = 54/148 (36%)
Query: 279 DYGRVRSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHG 337
D R R S R RDR S + R+ S S G+G G + + N +
Sbjct: 183 DRSRDRDRSRDRSRDR-SRERERDRSNSRNNNNGNGNGNGNGNGNGNGNNNNNNNNNNNI 241
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYERER-PSPENXXXXXXXXXXXXXXXX---DNGRVPS 393
++ + + N R SR +R R PS EN D R S
Sbjct: 242 NNNNNSNSNGNNKRN-RSSSRDRNKRNRSPSKENRYRRERDRSSSGTRNGNGRDRSRSTS 300
Query: 394 PNSMPEPRDSPGYDGADSPINERYRSRS 421
N + +P ++ + ++ + RSRS
Sbjct: 301 RNGLNKPNNNNNNNNNNNNKSNGNRSRS 328
Score = 54 (24.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 293 RGSPDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRR--DRGSP----ENGHGSSPSPYRK 345
R P+ G+ +SR +PY +ER+ R SR RR DR E S S R
Sbjct: 97 RSCPNGGKKNSRYNPYHRERSR-SRSRDRSRDRDRRRDDRRRSDKRRERDRSRSRSRSRD 155
Query: 346 GKPSPNNGRGPSRSPYERER 365
+ + R RS +R+R
Sbjct: 156 NRRRDDRDRSRDRSR-DRDR 174
Score = 48 (22.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/81 (28%), Positives = 28/81 (34%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR---RDRGSPENG 335
D R RS S R R D R+ SR + + R R R RDR
Sbjct: 145 DRSRSRSRSRDNRRRDDRDRSRDRSRDRDRSRDRSRDRDRSRDRDRSRDRSRDRSRERER 204
Query: 336 HGSSPSPYRKGKPSPN-NGRG 355
S+ G + N NG G
Sbjct: 205 DRSNSRNNNNGNGNGNGNGNG 225
Score = 45 (20.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKE---RAAIGHGRGPSRSPYRRDRGSPENG 335
GR RS S R P+ N++ + K R+ G R + SP R S NG
Sbjct: 292 GRDRSRSTSRNGLNKPNNNNNNNNNNNNKSNGNRSRSG-SRNRNPSPDRLGNNSAING 348
Score = 44 (20.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 18/50 (36%), Positives = 20/50 (40%)
Query: 280 YGRVRSPSPYRRDRGSP-DYGRNSSRSPYKKERAAIGHGRGPSRSPYRRD 328
Y R RS S RDR D R+ R K+ R SR RRD
Sbjct: 112 YHRERSRSR-SRDRSRDRDRRRDDRRRSDKRRERDRSRSRSRSRDNRRRD 160
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 137 (53.3 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G--FAFIYMDDERDAEDAIRGLDRTE 113
I+ GN D R D++ LF ++GKV VD+K+ G FAF+ +D RDA+DA++ D +
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 114 FGRKGRRLRVEWTK 127
+ G RLRVE+ +
Sbjct: 69 YD--GYRLRVEFPR 80
Score = 46 (21.3 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 25/76 (32%), Positives = 28/76 (36%)
Query: 290 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPS 349
R D G D G S G G G SR YR DR S P R+G P+
Sbjct: 187 REDSGDNDRGGGGGGSG----GGGGGSGGGGSRD-YR-DRS---RSRSFSSRPRRRGTPT 237
Query: 350 PNNGRGPSRSPYERER 365
+ R R Y R R
Sbjct: 238 YSPVR---RQSYSRSR 250
Score = 44 (20.5 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 387 DNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRS 421
D R S +S P R +P Y R RSRS
Sbjct: 219 DRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSRSRS 253
Score = 44 (20.5 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA 312
D R RS S R RG+P Y R Y + R+
Sbjct: 219 DRSRSRSFSSRPRRRGTPTYSP-VRRQSYSRSRS 251
Score = 40 (19.1 bits), Expect = 8.8e-09, Sum P(3) = 8.8e-09
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHG--SSPSPYR 344
G RG +R+ RD G G G + S YR
Sbjct: 85 GSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYR 116
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 106 (42.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAILD--GRELRVQMARY 92
Score = 87 (35.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 294 GSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGKPS 349
GS +G SRSP ++ R+ + R SRS Y R R S S +P ++ S
Sbjct: 115 GSRRHGARRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSRSRSYSRSRSKSHTPNKRKSKS 174
Query: 350 PNNGRGPSRSPYE-RERP-SPENXXXXXXXXXXXXXXXXDNGRVPS 393
P+ R SRS R R +P + D+G+ S
Sbjct: 175 PSRSRSRSRSKSRSRSRSRTPASNRESRSRSKSAPKSAGDDGQASS 220
Score = 81 (33.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 28/81 (34%), Positives = 35/81 (43%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
+G RS SP RR R S R+ SRS + R+ R S S R +P S
Sbjct: 119 HGARRSRSPRRRRR-SRSRSRSRSRS---RSRSRYSRSRSRSYSRSRSKSHTPNKRKSKS 174
Query: 340 PSPYRKGKPSPNNGRGPSRSP 360
PS R S + R SR+P
Sbjct: 175 PSRSRSRSRSKSRSRSRSRTP 195
Score = 81 (33.6 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAILDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 66 (28.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS--PYKKERAAIGHGRGPSRSPYR-RDRG-SPENGHG 337
R RS S Y R R S Y R+ S+S P K++ + R SRS R R R +P +
Sbjct: 142 RSRSRSRYSRSR-SRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTPASNRE 200
Query: 338 SSPSPYRKGKPSPNNGRGPS 357
S K + ++G+ S
Sbjct: 201 SRSRSKSAPKSAGDDGQASS 220
Score = 53 (23.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 280 YGRVRSPS--PYRRDRGSPDYGRNSSRSPYK-KERAAIGHGRGPSRSPYRR-DRGSPENG 335
Y R RS S P +R SP R+ SRS + + R+ SRS + + + ++G
Sbjct: 157 YSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTPASNRESRSRSKSAPKSAGDDG 216
Query: 336 HGSS 339
SS
Sbjct: 217 QASS 220
Score = 48 (22.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/112 (23%), Positives = 30/112 (26%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P Y G G G R G R P R R R +
Sbjct: 92 YGRPPDS--YYGGGGGGRRGSGGGGGSRRHGA---RRSRSPRRRRRSRSRSRSRSRSRSR 146
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRS-PPAED 426
R S SP + S R RSRS PA +
Sbjct: 147 SRYSRSRSRSYSRSRSKSHTPNKRKSKSPSRSRSRSRSKSRSRSRSRTPASN 198
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 125 (49.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
++ G Y R+ DLER F+ YG+ + +K+G+ F+ +D RDA+DA+ L+ E
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 63
Query: 118 GRRLRVE 124
G R+ VE
Sbjct: 64 GERVVVE 70
Score = 103 (41.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220
PY R RDLER F+ YG+ + I+ + FV++E DA A+ N +L + VE
Sbjct: 12 PYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 71
Query: 221 A 221
A
Sbjct: 72 A 72
Score = 75 (31.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 33/90 (36%), Positives = 41/90 (45%)
Query: 281 GRVRSPSPYRRDRGSP-DYGRNSSRSPYK-KERAAIGHGRGPSRSPYR-RDRGSPENGHG 337
GR RS S R R R SS S K + R+ GR S+SP + R R +
Sbjct: 206 GRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKS 265
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYERERPS 367
S K K S ++ R SRSP +RER S
Sbjct: 266 RDVS---KSK-SKSHSRTRSRSP-KRERDS 290
Score = 63 (27.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNN----GRGPSRSPYERERPSPEN 370
G GRG SRS R R S S + + K + GR S+SP + R +
Sbjct: 202 GSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKSPV-KSRSRSRS 260
Query: 371 XXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRS 421
R SP RDS + S R RSRS
Sbjct: 261 RSNKSRDVSKSKSKSHSRTRSRSPK---RERDSRSRSRSVSKRESRSRSRS 308
Score = 62 (26.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 42/198 (21%), Positives = 64/198 (32%)
Query: 167 RDLERHFEPYGKIISV---RIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223
+DL+ + G++ + RRN V++ D A++ + ++L R I +
Sbjct: 134 QDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGRRIHLV---- 189
Query: 224 DDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRV 283
+DRR G GR
Sbjct: 190 --EDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSRSKSRG-GRS 246
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
+S SP + R N SR K + + H R SRSP +R+R S S
Sbjct: 247 KSKSPVK-SRSRSRSRSNKSRDVSKSKSKS--HSRTRSRSP-KRERDSRSRSRSVSKRES 302
Query: 344 RKGKPSPNNGRGP-SRSP 360
R S + R SR P
Sbjct: 303 RSRSRSKSIHRDSRSRPP 320
Score = 54 (24.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/76 (31%), Positives = 28/76 (36%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKP-S 349
R G GR SRS + R+ R RS RR S S S + K S
Sbjct: 196 RSGGGGGSGRGRSRSSSSRSRS-----RSRRRSRSRRSSHSRSKSRSRSKSRGGRSKSKS 250
Query: 350 PNNGRGPSRSPYERER 365
P R SRS + R
Sbjct: 251 PVKSRSRSRSRSNKSR 266
Score = 44 (20.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/65 (33%), Positives = 28/65 (43%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYK--------KERAAIGHGRGPSRSPYRRDRGSPE 333
R RS S +R R P S S YK +R+A + SRS R SP+
Sbjct: 305 RSRSKSIHRDSRSRPPTVSFKS-SFYKFTTMPFFCSDRSASAENKSRSRS--RSRSASPK 361
Query: 334 NGHGS 338
NG+ S
Sbjct: 362 NGNAS 366
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 313 AIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPY 361
A G RG +R Y G G G + K S + P R+ Y
Sbjct: 72 ARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 119 (46.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 73 (30.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPS--RSPY--RRDRGSPEN 334
Y R RS S RR R SP R+ S S + A++ R S S Y R R +
Sbjct: 143 YSRSRSRSRGRRSRSASPR--RSRSVSLRRSRSASLRRSRSGSIIGSRYFQSRSRSRSRS 200
Query: 335 GHGSSPSPYR-KGK-PSPNNGRGPSRSPYERERP 366
S P R K + PSP R PS SP+ P
Sbjct: 201 RSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASP 234
Score = 55 (24.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 22/55 (40%), Positives = 25/55 (45%)
Query: 280 YGRVRSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPE 333
Y + RS S R R P R+ SRSP K R PS SP+R SPE
Sbjct: 189 YFQSRSRSRSRSRSISRPRSSRSKSRSPSPKR------SRSPSGSPHRS--ASPE 235
Score = 55 (24.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 30/122 (24%), Positives = 36/122 (29%)
Query: 307 YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS--RSPYERE 364
Y + R + R SRS RR S G R SP R S RS
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-----RSRSASPRRSRSVSLRRSRSASL 176
Query: 365 RPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 424
R S + + P S SP + SP +RS SP
Sbjct: 177 RRSRSGSIIGSRYFQSRSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPER 236
Query: 425 ED 426
D
Sbjct: 237 MD 238
Score = 48 (22.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 33/119 (27%), Positives = 39/119 (32%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGK 347
Y R R S R+ SRS ++ + R SRS RR R SP S S R
Sbjct: 122 YSRRRRSRSRSRSHSRSRGRR------YSRSRSRSRGRRSRSASPRRSR--SVSLRRSRS 173
Query: 348 PSPNNGRGPS--RSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSP 404
S R S S Y + R + R PSP P SP
Sbjct: 174 ASLRRSRSGSIIGSRYFQSR----SRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSP 228
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 108 (43.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 84 (34.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 38/133 (28%), Positives = 47/133 (35%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGSSGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGAD 410
+ R SRS + R P P S R+S
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPTSK---RES------- 200
Query: 411 SPINERYRSRSPP 423
N R RS+SPP
Sbjct: 201 ---NSRSRSKSPP 210
Score = 80 (33.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 79 (32.9 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 28/80 (35%), Positives = 35/80 (43%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R GS YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRY--GSSGYGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 71 (30.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 34/101 (33%), Positives = 42/101 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAI---GHGRGPSRS-PYRRDRG-- 330
YGR RS SP RR R S R+ SRS Y + ++ R S+S RR +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKS 173
Query: 331 -SPENGHGSSPSPYRKGKPSPNNGR-GPSRSPYERERPSPE 369
S S S R P P + R SRS + SPE
Sbjct: 174 SSVSRSRSRSRSRSRSRSPPPTSKRESNSRSRSKSPPKSPE 214
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 123 (48.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 61 GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120
GN +L F YG V D+ +AF++M+ DA +AIRGLD TEF +G+R
Sbjct: 83 GNISPTCTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKR 140
Query: 121 LRVE 124
+RV+
Sbjct: 141 MRVQ 144
Score = 114 (45.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVCINVEASKNK 73
Score = 83 (34.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T +L FE YG +I I +++AFV E EDA A+ +
Sbjct: 74 SKASTKLHVGNISPTCTNL-ELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLD 132
Query: 208 MSKLTDRVISVE 219
++ + + V+
Sbjct: 133 NTEFQGKRMRVQ 144
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 136 (52.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 136 (52.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 102 (41.0 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA 221
+++E+A
Sbjct: 65 ERVTIEHA 72
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 117 (46.2 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + +GFAF+ +D RDAED++RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/85 (31%), Positives = 34/85 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGR-GPSRSPYRRDRGSPENGHGSSP 340
R RS S RG YGR+ SRS ++ R+ R G +RS R S H S
Sbjct: 127 RTRSRSR-SHSRGRR-YGRSHSRSRGRRSRSLSPRSRSGSARSGTRTHSRSRSRSHSGSA 184
Query: 341 SPYRKGKPSPNNGRGPSRSPYERER 365
R + P+RS ER
Sbjct: 185 HRSRSASVRRSESGSPARSAVSVER 209
Score = 54 (24.1 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGKPSPNNGRGPSR 358
R +RS + +GR SRS RR R SP + GS+ R G + + R S
Sbjct: 125 RRRTRSRSRSHSRGRRYGRSHSRSRGRRSRSLSPRSRSGSA----RSGTRTHSRSRSRSH 180
Query: 359 S 359
S
Sbjct: 181 S 181
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRNSSRS---PYKKERAAIGHG---RGPSRSPYRRDRGSP 332
YGR S S RR R SP S+RS + + R+ G R S S R + GSP
Sbjct: 141 YGRSHSRSRGRRSRSLSPRSRSGSARSGTRTHSRSRSRSHSGSAHRSRSASVRRSESGSP 200
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 108 (43.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 47 (21.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 332 PENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
P++ H P R S + R SRS Y R +
Sbjct: 96 PDSHHSRRGPPPRSRSRSRSRSRSRSRSRYSRSK 129
Score = 45 (20.9 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPS 321
YGR P + RG P R+ SRS + R+ + R S
Sbjct: 92 YGR--PPDSHHSRRGPPPRSRSRSRSR-SRSRSRSRYSRSKS 130
Score = 44 (20.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 294 GSPDYGRNSSRSPYKKERA-AIGHGRGPSRSPYRRDR 329
G P +S R P + R+ + R SRS Y R +
Sbjct: 93 GRPPDSHHSRRGPPPRSRSRSRSRSRSRSRSRYSRSK 129
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 119 (46.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 101
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 102 C--GSRVRVE 109
Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 33/94 (35%), Positives = 40/94 (42%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPS--RSPY--RRDRGSPEN 334
Y R RS S RR R SP R+ S S + A++ R S S Y R R +
Sbjct: 172 YSRSRSRSRGRRSRSASPR--RSRSVSLRRSRSASLRRSRSGSIIGSRYFQSRSRSRSRS 229
Query: 335 GHGSSPSPYR-KGK-PSPNNGRGPSRSPYERERP 366
S P R K + PSP R PS SP+ P
Sbjct: 230 RSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASP 263
Score = 55 (24.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/55 (40%), Positives = 25/55 (45%)
Query: 280 YGRVRSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPE 333
Y + RS S R R P R+ SRSP K R PS SP+R SPE
Sbjct: 218 YFQSRSRSRSRSRSISRPRSSRSKSRSPSPKR------SRSPSGSPHRS--ASPE 264
Score = 55 (24.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/122 (24%), Positives = 36/122 (29%)
Query: 307 YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS--RSPYERE 364
Y + R + R SRS RR S G R SP R S RS
Sbjct: 151 YSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGR-----RSRSASPRRSRSVSLRRSRSASL 205
Query: 365 RPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPA 424
R S + + P S SP + SP +RS SP
Sbjct: 206 RRSRSGSIIGSRYFQSRSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPER 265
Query: 425 ED 426
D
Sbjct: 266 MD 267
Score = 48 (22.0 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 33/119 (27%), Positives = 39/119 (32%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPYRKGK 347
Y R R S R+ SRS ++ + R SRS RR R SP S S R
Sbjct: 151 YSRRRRSRSRSRSHSRSRGRR------YSRSRSRSRGRRSRSASPRRSR--SVSLRRSRS 202
Query: 348 PSPNNGRGPS--RSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSP 404
S R S S Y + R + R PSP P SP
Sbjct: 203 ASLRRSRSGSIIGSRYFQSR----SRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSP 257
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 136 (52.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 53 (23.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/81 (34%), Positives = 32/81 (39%)
Query: 282 RVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R RS S R R R S Y R+ SRS + R+ R SRSP PE
Sbjct: 192 RTRSSSRSRSRSRSRRSKSYSRSRSRS---RSRSK---SRSGSRSPV------PEKSQKR 239
Query: 339 SPSPYRKGKPSPNNGRGPSRS 359
S K S + R SRS
Sbjct: 240 GSSSRSKSPASVDRQRSRSRS 260
Score = 40 (19.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 308 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP 360
K+ R+ R +RS R R + S S R S + R SRSP
Sbjct: 181 KRHRSR-SRSRSRTRSS-SRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSP 231
Score = 39 (18.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 136 (52.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 53 (23.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/81 (34%), Positives = 32/81 (39%)
Query: 282 RVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R RS S R R R S Y R+ SRS + R+ R SRSP PE
Sbjct: 192 RTRSSSRSRSRSRSRRSKSYSRSRSRS---RSRSK---SRSGSRSPV------PEKSQKR 239
Query: 339 SPSPYRKGKPSPNNGRGPSRS 359
S K S + R SRS
Sbjct: 240 GSSSRSKSPASVDRQRSRSRS 260
Score = 40 (19.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 308 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP 360
K+ R+ R +RS R R + S S R S + R SRSP
Sbjct: 181 KRHRSR-SRSRSRTRSS-SRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSP 231
Score = 39 (18.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 136 (52.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ +D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKE 61
Score = 103 (41.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV++E DA A+ + +L
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
Query: 214 RVISVEYA-VRDDDDRRNG 231
+++E+A R R G
Sbjct: 65 ERVTIEHARARSRGGRGRG 83
Score = 53 (23.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/81 (34%), Positives = 32/81 (39%)
Query: 282 RVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
R RS S R R R S Y R+ SRS + R+ R SRSP PE
Sbjct: 192 RTRSSSRSRSRSRSRRSKSYSRSRSRS---RSRSK---SRSGSRSPV------PEKSQKR 239
Query: 339 SPSPYRKGKPSPNNGRGPSRS 359
S K S + R SRS
Sbjct: 240 GSSSRSKSPASVDRQRSRSRS 260
Score = 40 (19.1 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 308 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP 360
K+ R+ R +RS R R + S S R S + R SRSP
Sbjct: 181 KRHRSR-SRSRSRTRSS-SRSRSRSRSRRSKSYSRSRSRSRSRSKSRSGSRSP 231
Score = 39 (18.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S R + RA GRG R R P N ++P P R
Sbjct: 64 SERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAP-PVR 105
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 111 (44.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+ GLD
Sbjct: 11 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVLGLDGKII 70
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 71 C--GSRVRVE 78
Score = 77 (32.2 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 28/81 (34%), Positives = 35/81 (43%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR-KGK 347
Y R R S GR S + Y++ R+ I R S SP R GS S S R +
Sbjct: 141 YSRSR-SRSRGRRSRSASYRRSRS-ISPRRYRSFSPRRSRSGSLRRSRSRSRSRSRSRSV 198
Query: 348 PSPNNGRGPSRSPYERERPSP 368
P + R SRSP + SP
Sbjct: 199 VWPRSSRSKSRSPSPKRSHSP 219
Score = 73 (30.8 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 27/74 (36%), Positives = 32/74 (43%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSP-YRRDRG-SPENGHGSSPSPYRK 345
Y R R S R+ SRS ++ + RG SRS YRR R SP SP R
Sbjct: 120 YSRRRRSRSRSRSRSRSRGRRYSRSRSRSRGRRSRSASYRRSRSISPRRYRSFSPRRSRS 179
Query: 346 GKPSPNNGRGPSRS 359
G + R SRS
Sbjct: 180 GSLRRSRSRSRSRS 193
Score = 71 (30.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/84 (34%), Positives = 34/84 (40%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPS--RSPYR-RDRGSPENGH 336
Y R RS S RR R S Y R+ S SP + + R S RS R R R +
Sbjct: 141 YSRSRSRSRGRRSR-SASYRRSRSISPRRYRSFSPRRSRSGSLRRSRSRSRSRSRSRSVV 199
Query: 337 GSSPSPYRKGKPSPNNGRGPSRSP 360
S + PSP PS SP
Sbjct: 200 WPRSSRSKSRSPSPKRSHSPSGSP 223
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 149 (57.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 56/186 (30%), Positives = 81/186 (43%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLD 110
R I+ GN D R+ ++E LF +YG + +D+K G+AF+ +D RDA+DAI G D
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 111 RTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKT----LFVINFDPYHTRT 166
+F G RLRVE H + PS+ + V P
Sbjct: 67 GYDFD--GCRLRVE-IAHGGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPP-SASW 122
Query: 167 RDLERHFEPYGKIISVRI---RRNFA-FVQYEVQED---ATRALDATNM-SKLTDRVISV 218
+DL+ H G + + R+ + V Y +D A R LDAT + + I V
Sbjct: 123 QDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRV 182
Query: 219 -EYAVR 223
EY R
Sbjct: 183 REYESR 188
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 107 (42.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 55 MRP----IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDA 102
MRP +F N ++R DL R F RYG + V D S GFA+I +D RDA
Sbjct: 5 MRPPNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDA 64
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTK 127
EDA+ LDR GR++ +++ +
Sbjct: 65 EDALHNLDRKWVC--GRQIEIQFAQ 87
Score = 95 (38.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 28/83 (33%), Positives = 40/83 (48%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATR 201
P+ +LFV N +R DL R F YG I+ V I R FA++Q+E DA
Sbjct: 8 PNSSLFVRNISD-ESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL + + R I +++A D
Sbjct: 67 ALHNLDRKWVCGRQIEIQFAQGD 89
Score = 82 (33.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 29/78 (37%), Positives = 35/78 (44%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS-SP 340
R RS S RR SP Y R RS +E H R SR + R RGS + H S +
Sbjct: 117 RSRSRSYDRRRSRSPSYDRRRRRSDSPRESRGRTHSRR-SRE-HDRHRGSTRDHHRSRTD 174
Query: 341 SPYRKGKPSPNNGRGPSR 358
+ R PS + RG R
Sbjct: 175 AASRSRSPSRSRARGGRR 192
Score = 62 (26.9 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 26/83 (31%), Positives = 32/83 (38%)
Query: 279 DYGRVRSPSPYRRDRGSP--------DYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG 330
D R RS SP R RG D R S+R ++ A R PSRS R R
Sbjct: 134 DRRRRRSDSP-RESRGRTHSRRSREHDRHRGSTRDHHRSRTDAASRSRSPSRSRARGGRR 192
Query: 331 SPENG--HGSSPSPYRKGKPSPN 351
+ H S SP + + N
Sbjct: 193 ESDGARSHTHSASPQQNHSTAEN 215
Score = 58 (25.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/82 (28%), Positives = 33/82 (40%)
Query: 290 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR------------GSPENGHG 337
RR R D R S+R ++ A R PSRS R R SP+ H
Sbjct: 153 RRSR-EHDRHRGSTRDHHRSRTDAASRSRSPSRSRARGGRRESDGARSHTHSASPQQNHS 211
Query: 338 SSPSPYRKGKPSPNNGRGPSRS 359
++ + + G + + R SRS
Sbjct: 212 TAENKHSAGDDTHIHTRSASRS 233
Score = 55 (24.4 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 25/75 (33%), Positives = 30/75 (40%)
Query: 292 DRGSPDYGRNSSRSPYKKERAAIGHGRGPSRS-PYRRDRG-SPENGHGSSPSPYRKGKPS 349
DR +P +N RS + R R SRS Y R R SP S R+ S
Sbjct: 89 DRKTPGQMKNKERSSPRSSRYEDSDRRRRSRSRSYDRRRSRSP------SYDRRRRRSDS 142
Query: 350 PNNGRGPSRSPYERE 364
P RG + S RE
Sbjct: 143 PRESRGRTHSRRSRE 157
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 108 (43.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 42 (19.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
+GR P S + R RG P +G R S + R SRS
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGGYGRRSRSRSRSRSRSRSRS 133
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDR 329
G P +S R P + G+GR SRS R R R
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSRSRSRSR 128
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 113 (44.8 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M IF GN + ++ LF +YGK+ D+ F F++MD + +A++AI+ L +
Sbjct: 1 MVKIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHH--Y 58
Query: 115 GRKGRRLRVEWTK 127
G + VE +K
Sbjct: 59 MLNGMAMNVEMSK 71
Score = 81 (33.6 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 208
+ S L V N T ++L FE YG ++ I +++AFV E EDA A+ +
Sbjct: 75 KTSTKLHVGNISSSCTN-QELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDN 133
Query: 209 SKLTDRVISVE 219
+ +++SV+
Sbjct: 134 TAFQGKLMSVK 144
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 123 (48.4 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G AR+ D+ER F+ YG++ +D+K GF F+ D RDA+DA+ LD E
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFV---DPRDADDAVYELDGKE 58
Score = 91 (37.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ +P R +D+ER F+ YG+I + ++R F FV +DA LD + ++
Sbjct: 6 VFIGRLNPA-AREKDVERFFKGYGRIRDIDLKRGFGFVDPRDADDAVYELDGKELC--SE 62
Query: 214 RVISVEYA 221
RV ++E+A
Sbjct: 63 RV-TIEHA 69
Score = 62 (26.9 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/82 (32%), Positives = 32/82 (39%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP--ENGHG 337
YG +RS S R S R+ SRS + R + R SRS R SP E
Sbjct: 181 YGYLRSRSRSRSRSRSSSRSRSRSRS---RSRKSYSRSRSRSRSKSRSVSRSPMPEKSQK 237
Query: 338 SSPSPYRKGKPSPNNGRGPSRS 359
S K S + R SRS
Sbjct: 238 RGSSSRSKSPSSVDRQRSRSRS 259
Score = 59 (25.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRG-SPENGHGSSPSPY-RKGKPSPNNGRGPS 357
R+ SRS + + R SR Y R R S S SP K + ++ R S
Sbjct: 187 RSRSRSRSRSSSRSRSRSRSRSRKSYSRSRSRSRSKSRSVSRSPMPEKSQKRGSSSRSKS 246
Query: 358 RSPYERER 365
S +R+R
Sbjct: 247 PSSVDRQR 254
Score = 37 (18.1 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 326 RRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
+R R S S R S + R SR Y R R
Sbjct: 177 KRHRYGYLRSRSRSRSRSRSSSRSRSRSRSRSRKSYSRSR 216
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 128 (50.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTE 113
+F G+ AR+ D+E+ F+ YG++ + +K+GF F+ +D RDA+DAI L+ E
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKE 61
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 165 RTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
R RD+E+ F+ YG+I + ++ F FV++E DA A+ N +L D +++E+A
Sbjct: 16 RERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEHA 72
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 125 (49.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD-R 111
R ++ G+ +AR++DLE +F YG + V + GFAF+ + RDA DA+RGLD R
Sbjct: 8 RKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGR 67
Query: 112 TEFGRKGR 119
T GR+ R
Sbjct: 68 TVCGRRAR 75
Score = 58 (25.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/94 (31%), Positives = 39/94 (41%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKK-ERAAIGHGRGPSRSPYRRDRGSPENGHG- 337
+ R RS S RR R S R+ SRS R+ +GR + S R NG G
Sbjct: 144 FSRSRSTSRRRRTR-SKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYS-DHERNGSGA 201
Query: 338 --SSPSPYRKGKPSPNNG-RGPSRSPYERERPSP 368
S P P R+ + ++ RG RS SP
Sbjct: 202 VDSPPPPKRRYEDEDDDRVRGSPRSRSRSRSASP 235
Score = 55 (24.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 290 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR------RDRGSPENGHGSSPSPY 343
R+ R S + R+ S S ++ R+ G R SRS R G ENG S S +
Sbjct: 136 RQRRRSNSFSRSRSTSRRRRTRSKSGT-RSRSRSAGSVGRRSGRSNGRDENGSASRYSDH 194
Query: 344 RKGKPSPNNGRGPSRSPYERE 364
+ + P + YE E
Sbjct: 195 ERNGSGAVDSPPPPKRRYEDE 215
Score = 54 (24.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/100 (34%), Positives = 40/100 (40%)
Query: 282 RVRSPSPYR-RDRGSPDYGRNSSRSPYKKERAAIG-------HGRGPSRSP------YR- 326
R RS S R R R + GR S RS + E + +G G SP Y
Sbjct: 155 RTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERNGSGAVDSPPPPKRRYED 214
Query: 327 ----RDRGSPENGHGS-SPSP-YRKGKPSPNNG-RGPSRS 359
R RGSP + S S SP R+G P G SRS
Sbjct: 215 EDDDRVRGSPRSRSRSRSASPAVRRGSPPRRRGDSSASRS 254
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 118 (46.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG-----FAFIYMDDERDAEDAIRGLD 110
R I+ GN D R+ ++E +F +YG++ +++K + F+ + RDAEDAI+G D
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRD 66
Query: 111 RTEFGRKGRRLRVE 124
+ G RLRVE
Sbjct: 67 G--YNLDGCRLRVE 78
Score = 69 (29.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 30/90 (33%), Positives = 37/90 (41%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP----SRSPYRRDRGSPENGHG 337
R RSPS R S R RS + + R+ + + P S+SP RR S
Sbjct: 204 RSRSPSRSRSRSRSRSRSRGRGRS-HSRSRS-LSRSKSPRKDLSKSP-RRSL-SRSISKS 259
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYERERPS 367
SPSP +K P R SRS PS
Sbjct: 260 RSPSPDKKKSPPRAMSRSKSRSRSRSRSPS 289
Score = 64 (27.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 29/103 (28%), Positives = 38/103 (36%)
Query: 308 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR---KGK-PSPNNGRGP----SRS 359
KK ++ R PSRS R S G G S S R + K P + + P SRS
Sbjct: 196 KKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRS 255
Query: 360 PYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD 402
+ PSP+ R PS S P+ R+
Sbjct: 256 ISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPS-KSPPKVRE 297
Score = 61 (26.5 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 282 RVRSPSPYR-RDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
R RS S R R RG S R+ SRS ++ + R SRS + SP+
Sbjct: 212 RSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPP 271
Query: 340 PSPYRKGKPSPNNGRGPSRSP 360
+ R S + R PS+SP
Sbjct: 272 RAMSRSKSRSRSRSRSPSKSP 292
Score = 56 (24.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPS----RSPYRRDRGSPENGH 336
GR RS S R S ++ S+SP + +I R PS +SP R S
Sbjct: 223 GRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSR 282
Query: 337 GSSPSPYRKGKPSPNNG 353
S SP K P G
Sbjct: 283 SRSRSP-SKSPPKVREG 298
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 27/110 (24%), Positives = 35/110 (31%)
Query: 318 RGP-SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERP---SPENXXX 373
R P +R R + SPS R S + RG RS + R R S
Sbjct: 185 RNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRS-HSRSRSLSRSKSPRKD 243
Query: 374 XXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
R PSP+ P + + S R S+SPP
Sbjct: 244 LSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPP 293
Score = 51 (23.0 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGS 331
RSPSP ++ SP R SRS K R+ R PS+SP + GS
Sbjct: 260 RSPSPDKKK--SPP--RAMSRS---KSRSR-SRSRSPSKSPPKVREGS 299
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPASKRESK 201
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 34/101 (33%), Positives = 42/101 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAI---GHGRGPSRS-PYRRDRG-- 330
YGR RS SP RR R S R+ SRS Y + ++ R S+S RR +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKS 173
Query: 331 -SPENGHGSSPSPYRKGKPSPNNGR-GPSRSPYERERPSPE 369
S S S R P P + R SRS + SPE
Sbjct: 174 SSVSRSRSRSRSRSRSRSPPPASKRESKSRSRSKSPPKSPE 214
Score = 67 (28.6 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 25/81 (30%), Positives = 33/81 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K A + S S R S P+
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPA 195
Query: 342 PYRKGKPSPNNGRGPSRSPYE 362
R+ K S + + P +SP E
Sbjct: 196 SKRESK-SRSRSKSPPKSPEE 215
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRSRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK 201
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
YGR RS SP RR R S R+ SRS Y + ++ R SRS +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSK 172
Query: 337 GSSPSPYRKGKPSPNNGRGP 356
SS S R S + R P
Sbjct: 173 SSSVSRSRSRSRSRSRSRSP 192
Score = 66 (28.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEE 215
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRSRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK 201
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
YGR RS SP RR R S R+ SRS Y + ++ R SRS +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSK 172
Query: 337 GSSPSPYRKGKPSPNNGRGP 356
SS S R S + R P
Sbjct: 173 SSSVSRSRSRSRSRSRSRSP 192
Score = 66 (28.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEE 215
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRSRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK 201
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
YGR RS SP RR R S R+ SRS Y + ++ R SRS +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSK 172
Query: 337 GSSPSPYRKGKPSPNNGRGP 356
SS S R S + R P
Sbjct: 173 SSSVSRSRSRSRSRSRSRSP 192
Score = 66 (28.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEE 215
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRSRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK 201
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
YGR RS SP RR R S R+ SRS Y + ++ R SRS +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSK 172
Query: 337 GSSPSPYRKGKPSPNNGRGP 356
SS S R S + R P
Sbjct: 173 SSSVSRSRSRSRSRSRSRSP 192
Score = 66 (28.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEE 215
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRSRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 73 (30.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK 201
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGH 336
YGR RS SP RR R S R+ SRS Y + ++ R SRS +
Sbjct: 115 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSK 172
Query: 337 GSSPSPYRKGKPSPNNGRGP 356
SS S R S + R P
Sbjct: 173 SSSVSRSRSRSRSRSRSRSP 192
Score = 66 (28.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEE 215
Score = 52 (23.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRSRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 97 (39.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDR 111
M ++ GN + + +LE F+ +G + V + G+AF+ DDERDA DAI LDR
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Score = 83 (34.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 34/84 (40%), Positives = 37/84 (44%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RSPSP RR SPDYG Y R +I RG P RR P G S S
Sbjct: 112 RRRSPSPRRRR--SPDYG-------YA--RRSISP-RGRRSPPRRRSVTPPRRGRSYSRS 159
Query: 342 PYRKG--KPSPNNGRGP--SRSPY 361
P +G + SP P RSPY
Sbjct: 160 PPYRGSRRDSPRRRDSPYGRRSPY 183
Score = 73 (30.8 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDA 205
++V N DP T R+LE F+ +G + +V + R +AF++++ + DA A+ A
Sbjct: 4 VYVGNLDPRVTE-RELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISA 57
Score = 68 (29.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 25/64 (39%), Positives = 28/64 (43%)
Query: 315 GHGRGPSRSPYRRDRGSPENGHGS---SPS-----PYRKGKPSPNNGRGPSRSPYER--E 364
G G RSP R R SP+ G+ SP P R+ P GR SRSP R
Sbjct: 107 GRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 166
Query: 365 RPSP 368
R SP
Sbjct: 167 RDSP 170
Score = 49 (22.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 389 GRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
G V + P R SP Y A I+ R R RSPP
Sbjct: 109 GSVRRRSPSPRRRRSPDYGYARRSISPRGR-RSPP 142
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 104 (41.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYG--KVDRVDMKSGFAFIYMDDERDAEDAIRG 108
EV+ R ++ GN + + D+E F +G K+ + + +GF FI +D DA D +
Sbjct: 3 EVSSTR-LYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMNGFGFIEYEDAMDARDIVPA 61
Query: 109 LDRTEFGRKGRRLRVEWTK 127
++F KG RL V++ +
Sbjct: 62 FHGSDF--KGERLTVQFAR 78
Score = 89 (36.4 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIRRNFAFVQYEVQEDATRALDA 205
T S T + P + +D+E HF +G KI +++ F F++YE DA + A
Sbjct: 2 TEVSSTRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMNGFGFIEYEDAMDARDIVPA 61
Query: 206 TNMSKLTDRVISVEYA 221
+ S ++V++A
Sbjct: 62 FHGSDFKGERLTVQFA 77
Score = 84 (34.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/88 (32%), Positives = 39/88 (44%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP-----ENGH 336
R RSP P RRD YGR + P ++ P R PY G P ++ +
Sbjct: 218 RERSPIPMRRDYYGDGYGRRTPPRPRMEDYP-------PPRRPYEDPYGPPPPPRYDDPY 270
Query: 337 GSSPSPYRKGKP-SPNNGRGPSRSPYER 363
+ P PY G+P SP G +PY+R
Sbjct: 271 AAPPRPY--GRPRSPPRG---DYAPYDR 293
Score = 61 (26.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 24/77 (31%), Positives = 28/77 (36%)
Query: 288 PYR-RD--RGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
PYR R RG P R + + H R S P RRD G + P P
Sbjct: 185 PYRSRSPRRGYPPMDEYDRRYSVPRGYSPRSHYRERSPIPMRRDYYGDGYGRRTPPRPRM 244
Query: 345 KGKPSPNNGRGPSRSPY 361
+ P P R P PY
Sbjct: 245 EDYPPP---RRPYEDPY 258
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 134 (52.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+ G D
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 113 EFGRKGRRLRVEWTK 127
++ G RLRVE+ +
Sbjct: 78 DYD--GYRLRVEFPR 90
Score = 45 (20.9 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 295 SPDYGRNSSRSPYKKERAAIG 315
SP YGR+ SRS E A +G
Sbjct: 199 SPSYGRSRSRSVVVAE-AVVG 218
>POMBASE|SPBC11C11.08 [details] [associations]
symbol:srp1 "SR family protein, human SRFS2 ortholog
Srp1" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC11C11.08 GO:GO:0005634 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0045292 EMBL:U66833 PIR:T48696 RefSeq:NP_596398.1
ProteinModelPortal:Q10193 STRING:Q10193 PRIDE:Q10193
EnsemblFungi:SPBC11C11.08.1 GeneID:2539818 KEGG:spo:SPBC11C11.08
eggNOG:NOG77895 OMA:DCYRYSK OrthoDB:EOG473T21 NextBio:20800967
Uniprot:Q10193
Length = 275
Score = 95 (38.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 41/150 (27%), Positives = 58/150 (38%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
D GR+RS SP SP R SRSPY ER+ R S SP R R +G
Sbjct: 109 DSGRLRSRSP------SPHEAR--SRSPYNDERS----DRR-SMSPRYRSRSRSPDGRSR 155
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXD--NGRVPSPNS 396
SP Y + P N+ R PS + ++ EN + +G S
Sbjct: 156 SPD-YDRRSPKRNH-RSPSPVSFAPQKSPVENETETNVDNGDTKISESNEKSGTEVEQQS 213
Query: 397 MPEPRDSPGYDGADSPINERYRSRSPPAED 426
P + + + P+ + + PP E+
Sbjct: 214 APNSNGNEEVNNLE-PVGQNESKQEPPKEE 242
Score = 91 (37.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIR 107
+R ++ F R +L F +G + R D+ FAF+ +D RDAEDA
Sbjct: 6 LRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYY 65
Query: 108 GLDRTEFGRKGRRLRVEWTK 127
+ R G LRVEW K
Sbjct: 66 EVHGRRLERGGGVLRVEWAK 85
Score = 84 (34.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 29/82 (35%), Positives = 39/82 (47%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-------VRIRRNFAFVQYEVQEDATR 201
R +TL+V F R R+L FEP+G +I R R FAFV+YE DA
Sbjct: 4 RSLRTLYVTGFRD-GMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAED 62
Query: 202 ALDATNMSKLT--DRVISVEYA 221
A + +L V+ VE+A
Sbjct: 63 AYYEVHGRRLERGGGVLRVEWA 84
Score = 70 (29.7 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 22/48 (45%), Positives = 25/48 (52%)
Query: 319 GP-SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
GP S+ RR+RG HG S R PSP+ R SRSPY ER
Sbjct: 91 GPGSKRGGRRERGG--RVHGDS-GRLRSRSPSPHEAR--SRSPYNDER 133
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 108 (43.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 80 (33.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALDATNMSKLTD 213
Y T L R FE YG++ V I R+ FAFV++ + DA A+DA + + L
Sbjct: 23 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 82
Query: 214 RVISVEYA 221
R + V+ A
Sbjct: 83 RELRVQMA 90
Score = 71 (30.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR + RSP ++ R+ + R SRS Y R + S S
Sbjct: 103 RGPPPRRYGGGG--YGRRT-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 160 TSKSRSARRSKSKSSSVSRS 179
Score = 71 (30.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 26/79 (32%), Positives = 32/79 (40%)
Query: 280 YGR-VRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHG 337
YGR RSP RR R S R+ SRS Y + ++ R SRS +
Sbjct: 115 YGRRTRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSKS 173
Query: 338 SSPSPYRKGKPSPNNGRGP 356
SS S R S + R P
Sbjct: 174 SSVSRSRSRSRSRSRSRSP 192
Score = 70 (29.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 29/111 (26%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR +RSP RR R S S S Y + K S
Sbjct: 93 GRPPDSHHSRRGPPPRRYGGGGYGRR-TRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 150
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 151 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK 201
Score = 66 (28.3 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 137 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 193
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 194 PVSKRESKSRSRSKSPPKSPEE 215
Score = 51 (23.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 28/108 (25%), Positives = 36/108 (33%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXX 375
+GR P S + R RG P +G Y + SP R SRS R R +
Sbjct: 92 YGRPPD-SHHSR-RGPPPRRYGGGG--YGRRTRSPRRRRR-SRSR-SRSRSRSRSRSRYS 145
Query: 376 XXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPP 423
S ++ S + S R RSRSPP
Sbjct: 146 RSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 193
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 124 (48.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--G---FAFIYMDDERDAEDAIRG 108
I+ GN D R+ DLE LF +YG++ +++K+ G FAF+ +D RDAEDAI G
Sbjct: 4 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 59
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 100 (40.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 49/151 (32%), Positives = 58/151 (38%)
Query: 293 RGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS---PSPYRKGKP 348
RG P R SR P + R G RGP SR Y D G N + SS P P ++G P
Sbjct: 94 RGPPPPPR--SRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPP 151
Query: 349 SPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD---SP 404
P +G GP P +R PS P G P +P RD SP
Sbjct: 152 -PRSG-GP---PPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYLSP 206
Query: 405 ---GYDGADS------PINERYRSRSPPAED 426
GY DS P + R +PP D
Sbjct: 207 RDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 237
Score = 87 (35.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 80 (33.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 29/92 (31%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ + + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Score = 75 (31.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 37/141 (26%), Positives = 46/141 (32%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DY +SSR Y +R G R PS YR S N
Sbjct: 229 RDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 288
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 289 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 348
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 349 SMERGYPPPRDSYSSSSRGAP 369
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 108 (43.1 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 30/86 (34%), Positives = 43/86 (50%)
Query: 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDA 102
+V M + N Y L R+F +YG+V DR +S GFAF+ D+RDA
Sbjct: 9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 68
Query: 103 EDAIRGLDRTEFGRKGRRLRVEWTKH 128
EDA+ +D GR LRV+ ++
Sbjct: 69 EDAMDAMDGAVLD--GRELRVQMARY 92
Score = 66 (28.3 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 27/82 (32%), Positives = 35/82 (42%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K R+A + S S R S SP
Sbjct: 125 RSRSRSRYSRSK-SRSRTRSRSRST-SKSRSA-RRSKSKSSSVSRSRSRSRSRSRSRSPP 181
Query: 342 PYRKGKP-SPNNGRGPSRSPYE 362
P K + S + + P +SP E
Sbjct: 182 PVSKRESKSRSRSKSPPKSPEE 203
Score = 62 (26.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/74 (31%), Positives = 29/74 (39%)
Query: 284 RSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSP 342
RSP RR R S R+ SRS Y + ++ R SRS + SS S
Sbjct: 108 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSR-SRTRSRSRSTSKSRSARRSKSKSSSVSR 166
Query: 343 YRKGKPSPNNGRGP 356
R S + R P
Sbjct: 167 SRSRSRSRSRSRSP 180
Score = 53 (23.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/88 (27%), Positives = 28/88 (31%)
Query: 318 RGPS-RSPYRRDRG---SPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXX 373
RGP RSP RR R S S S Y + K S + R SRS +
Sbjct: 103 RGPPPRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SRSRTRSRSRSTSKSRSARRSKSKS 161
Query: 374 XXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
R P P S E +
Sbjct: 162 SSVSRSRSRSRSRSRSRSPPPVSKRESK 189
Score = 48 (22.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 24/91 (26%), Positives = 33/91 (36%)
Query: 344 RKGKP--SPNNGRGPS-RSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPN-SMPE 399
R G+P S ++ RGP RSP R R + R S + S +
Sbjct: 91 RYGRPPDSHHSRRGPPPRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSK 150
Query: 400 PRDSPGYDGADSPINE-------RYRSRSPP 423
R + S ++ R RSRSPP
Sbjct: 151 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPP 181
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 105 (42.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGGTL 71
Query: 115 GRKGRRLRVEWTKHE 129
G R+RVE + E
Sbjct: 72 C--GCRVRVELSNGE 84
Score = 59 (25.8 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSP-SPYRKGKPSPNNGRGPSRSPYERER 365
R + G RS R+RG P + G P YR+ P P R P R + R R
Sbjct: 75 RVRVELSNGEKRS---RNRGPPPSW-GRRPRDDYRRRSPPPRR-RSPRRRSFSRSR 125
Score = 58 (25.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERA--AIGHGRG--PSRSPYRRDR 329
DY R RSP P RR + R+ SRS + R ++ R PSRS + R R
Sbjct: 103 DYRR-RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRS-FSRSR 155
Score = 38 (18.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 99 (39.9 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110
+F GN + + ++L LF +YG V D+ + F++M+ E+ DAI+ L+
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLN 61
Score = 73 (30.8 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
NT P+ +FV N TR ++ F+ YG ++ I RN+ FV + D A+
Sbjct: 82 NT-PTTKIFVGNLTD-KTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKEL 139
Query: 207 N 207
N
Sbjct: 140 N 140
Score = 46 (21.3 bits), Expect = 9.7e-07, Sum P(3) = 9.7e-07
Identities = 20/52 (38%), Positives = 22/52 (42%)
Query: 284 RSPSPYRRDRGSPDYG-------RNSSRSPYKKERAAIGHG-RGPSRSPYRR 327
RSP P R G YG + SR + ER G RGPS P RR
Sbjct: 299 RSPPPPRSSNGMSRYGSPTPHGYEDFSRDAFD-ERMISSRGMRGPS-PPGRR 348
Score = 42 (19.8 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 393 SPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 426
S S P PR S G SP Y S A D
Sbjct: 297 SRRSPPPPRSSNGMSRYGSPTPHGYEDFSRDAFD 330
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 119 (46.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/70 (42%), Positives = 40/70 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDAEDA+RGLD
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 97 (39.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 62 NFEYDARQSDLERLFRRYGKVDRVDM------KS--GFAFIYMDDERDAEDAIRGLDRTE 113
N Y L R+F +YG+V V + K+ GFAF+ D RDA+DA +D E
Sbjct: 20 NLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79
Query: 114 FGRKGRRLRVEWTKH 128
GR LRV+ ++
Sbjct: 80 LD--GRELRVQVARY 92
Score = 82 (33.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/90 (41%), Positives = 38/90 (42%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
D R R P R RG YGR S RS +GR SRSP RR R S G
Sbjct: 96 DLPRSRQGEPRGRSRGG-GYGRRS-RS----------YGRR-SRSPRRRHR-SRSRGPSC 141
Query: 339 SPSPYRKGKPSPNNGRGP-SRSPYERERPS 367
S S R R P SRSPY R R S
Sbjct: 142 SRSRSRSRYRGSRYSRSPYSRSPYSRSRYS 171
Score = 76 (31.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 29/73 (39%), Positives = 32/73 (43%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS---SPSPYRKGKPSP 350
G D R+ P + R G+GR SRS RR R SP H S PS R S
Sbjct: 93 GRRDLPRSRQGEPRGRSRGG-GYGRR-SRSYGRRSR-SPRRRHRSRSRGPSCSRSRSRSR 149
Query: 351 NNGRGPSRSPYER 363
G SRSPY R
Sbjct: 150 YRGSRYSRSPYSR 162
Score = 75 (31.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 31/90 (34%), Positives = 41/90 (45%)
Query: 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALD 204
TL V N Y T L R FE YG++ V I R FAFV++ + DA A
Sbjct: 15 TLKVDNLT-YRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 205 ATNMSKLTDRVISVE---YAVRDDDDRRNG 231
A + ++L R + V+ Y RD R G
Sbjct: 74 AMDGAELDGRELRVQVARYGRRDLPRSRQG 103
Score = 71 (30.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 34/123 (27%), Positives = 41/123 (33%)
Query: 284 RSP---SPYRRDRGSPDYGRNS-SRSPYKKERAAIGH--GRGPSRSPYRRDRGSPENGH- 336
RSP SPY R R Y R+ SRS Y++ R H G S S Y R S +
Sbjct: 157 RSPYSRSPYSRSR----YSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKS 212
Query: 337 GSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNS 396
GSS S ++ R S R R + R P
Sbjct: 213 GSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKRPPK 272
Query: 397 MPE 399
PE
Sbjct: 273 SPE 275
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 100 (40.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 49/151 (32%), Positives = 58/151 (38%)
Query: 293 RGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS---PSPYRKGKP 348
RG P R SR P + R G RGP SR Y D G N + SS P P ++G P
Sbjct: 94 RGPPPPPR--SRGPPRGLRGGSGGTRGPPSRGGYMDDGGYSMNFNMSSSRGPLPVKRGPP 151
Query: 349 SPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD---SP 404
P +G GP P +R PS P G P +P RD SP
Sbjct: 152 -PRSG-GP---PPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYLSP 206
Query: 405 ---GYDGADS------PINERYRSRSPPAED 426
GY DS P + R +PP D
Sbjct: 207 RDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 237
Score = 83 (34.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+D
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDV 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 76 (31.8 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 28/92 (30%), Positives = 39/92 (42%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ + + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
N L + I VE A + + R G
Sbjct: 64 DVARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Score = 74 (31.1 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 37/141 (26%), Positives = 46/141 (32%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DY +SSR Y +R G R PS YR S N
Sbjct: 229 RDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRDREYSDHPSGGSYRDSYESYGNS 288
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 289 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 348
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 349 SMERGYPPPRDSYSSSSRGAP 369
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 100 (40.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 33/86 (38%), Positives = 41/86 (47%)
Query: 148 TRPSKT-LFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQED 198
TRP T LF+ N TR DL R F YG I+ V I R FA+VQ+E D
Sbjct: 5 TRPPNTSLFIRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRD 63
Query: 199 ATRALDATNMSKLTDRVISVEYAVRD 224
A AL N + R I +++A D
Sbjct: 64 AEDALYNLNRKWVCGRQIEIQFAQGD 89
Score = 87 (35.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
+R GR++ +++ +
Sbjct: 72 NRKWVC--GRQIEIQFAQ 87
Score = 77 (32.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 36/148 (24%), Positives = 56/148 (37%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
D+ R RSPS R S +GRN RS KE H R R + P +
Sbjct: 108 DHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESR---HRRFSYSQSKSRSKSLPRRSTSA 164
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMP 398
S + + + GR S+S +R + ++ +GR S +
Sbjct: 165 RQSRTPR-RNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR-HSDSIAR 222
Query: 399 EPRDSP-GYDGADSPI----NERYRSRS 421
P SP GY +++ + + +RS S
Sbjct: 223 SPCKSPKGYTNSETKVQTAKHSHFRSHS 250
>TAIR|locus:2025092 [details] [associations]
symbol:SR45a "serine/arginine rich-like protein 45a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0009644 "response to high light
intensity" evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009644
GO:GO:0030529 GO:GO:0043484 eggNOG:COG0724 HSSP:Q14103
EMBL:BT005797 IPI:IPI00529615 RefSeq:NP_563787.2 UniGene:At.24511
ProteinModelPortal:Q84TH4 SMR:Q84TH4 STRING:Q84TH4
EnsemblPlants:AT1G07350.1 GeneID:837246 KEGG:ath:AT1G07350
TAIR:At1g07350 HOGENOM:HOG000239942 InParanoid:Q84TH4 OMA:SYSPYYR
ProtClustDB:CLSN2918464 ArrayExpress:Q84TH4 Genevestigator:Q84TH4
Uniprot:Q84TH4
Length = 382
Score = 92 (37.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/93 (39%), Positives = 43/93 (46%)
Query: 282 RVRSPSPYRRDRG---SPDYGR---NSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENG 335
R RS S Y DRG SP YGR +SS SP+ + R PSRSP DR +
Sbjct: 189 RSRSRS-YSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYS----PSRSPSPDDRYNRRRD 243
Query: 336 HGSSPSPYRKGKPSPN---NGRGPSRSPYERER 365
SP YR+ S + N R RSPY R
Sbjct: 244 RSYSPY-YRRRDRSRSYSRNCRARDRSPYYMRR 275
Score = 91 (37.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATR 201
P +L+V + RDLE HF GK+ V + R F F+ + DA R
Sbjct: 73 PGNSLYVTGLS-HRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR 131
Query: 202 ALDATNMSKLTDRVISVEYAVR 223
+ + + S L RVI+VE A R
Sbjct: 132 CIRSLDHSVLQGRVITVEKARR 153
Score = 78 (32.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 36/91 (39%), Positives = 41/91 (45%)
Query: 282 RVRSPSP-YR-RDRG-SPDY-GRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHG 337
R RS SP YR RDR SP Y GR+ S SP+ + R P YRR R +G
Sbjct: 279 RSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGR---DRSYSPESRYYRRHRSV--SGSV 333
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYER-ERPS 367
S SP GR SRS R +R S
Sbjct: 334 SPGGRSMSRSISPRKGRKESRSKSRRHDRQS 364
Score = 78 (32.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 39/101 (38%), Positives = 44/101 (43%)
Query: 280 YGRVRSPSP---Y--RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPY--RRDRG-- 330
Y RSPSP Y RRDR Y R RS R+ + R RSPY RR R
Sbjct: 226 YSPSRSPSPDDRYNRRRDRSYSPYYRRRDRS-----RSYSRNCRARDRSPYYMRRYRSRS 280
Query: 331 ---SPE-NGHGSSPSPYRKGKP---SPN-NGRGPSRSPYER 363
SP S SPY +G+ SP+ GR S SP R
Sbjct: 281 RSYSPRYRARDRSCSPYYRGRDRSYSPHYQGRDRSYSPESR 321
Score = 65 (27.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 32/116 (27%), Positives = 48/116 (41%)
Query: 17 YSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLF 76
YS S+ P K+ R RS ++ S+++ ++ + + DLE F
Sbjct: 39 YSPSLSPYDKRR--GRSVSRSLSRSPTR-SVSSDAENPGNSLYVTGLSHRVTERDLEDHF 95
Query: 77 RRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124
+ GKV V + GF FI M DA IR LD + +GR + VE
Sbjct: 96 AKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL--QGRVITVE 149
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 121 (47.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 48/187 (25%), Positives = 76/187 (40%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDR-----VDMKS-GFAFIYMDDERDAEDAIRGLDR 111
++ NF + LE+LF ++G + V+ KS GF F+ + +AE A++ L
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 112 TEFGRKGRRLRV--EWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRD- 168
+ +L V K E L+V N D T D
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLD--ETVDDDG 332
Query: 169 LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
L++ FE YG I S ++ + F FV +E E+AT A+ N + + + V A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 222 VRDDDDR 228
R +D R
Sbjct: 393 QRKEDRR 399
Score = 65 (27.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 21/93 (22%), Positives = 40/93 (43%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKK-ERAAIGHGR--GPSRSPYRRDRGSPENGH 336
Y + P Y+ G P + R P ++ + A G R GP R+ ++ G +
Sbjct: 471 YMMAQGPGVYQNRMGRPQNQQGGPRGPPQQYNQVAQGGVRMQGPPRT---QNPGVQQQNV 527
Query: 337 GSSPSPYRKGKPSPNNGRGPSRSPYERERPSPE 369
P ++ +P+P + P + PY+ + P+
Sbjct: 528 PRPPQQQQQQRPAPTGPKAPPQ-PYQAYQQRPQ 559
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 101 (40.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 34/86 (39%), Positives = 41/86 (47%)
Query: 148 TRPSKT-LFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQED 198
TRP T LFV N TR DL R F YG I+ V I R FA+VQ+E D
Sbjct: 5 TRPPNTSLFVRNVADA-TRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRD 63
Query: 199 ATRALDATNMSKLTDRVISVEYAVRD 224
A AL N + R I +++A D
Sbjct: 64 AEDALYNLNRKWVCGRQIEIQFAQGD 89
Score = 87 (35.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
+R GR++ +++ +
Sbjct: 72 NRKWVC--GRQIEIQFAQ 87
Score = 75 (31.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/96 (32%), Positives = 40/96 (41%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKE--RAAIGHGRGPSRS---PYR----RDR 329
D+ R RSPS R S +GRN RS KE + + SRS P R R
Sbjct: 108 DHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQS 167
Query: 330 GSPENGHGSSPSPYRKG--KPSPNNGRGPSRSPYER 363
+P GS K K S + G+ S SP ++
Sbjct: 168 RTPRRNSGSRERSRSKSLQKRSKSIGKSQSSSPQKQ 203
Score = 60 (26.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 28/82 (34%), Positives = 33/82 (40%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSP-YKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
SPS +RR R SP R SRS + + R R S R R S S S
Sbjct: 105 SPSDHRRSR-SPSQRRTRSRSSSWGRNRR-----RSDSLKESRHRRFSYSQSKSRSKSLP 158
Query: 344 RKGKPSPNNGRGPSRSPYERER 365
R+ S R P R+ RER
Sbjct: 159 RRST-SARQSRTPRRNSGSRER 179
Score = 53 (23.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
RS S RR S R R+ +ER+ + S+S + SP+ S
Sbjct: 153 RSKSLPRRST-SARQSRTPRRNSGSRERSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSR 211
Query: 344 RKGKPSPNNGRGPSRSP 360
G+ S + R P +SP
Sbjct: 212 SHGRHSDSIARSPCKSP 228
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 117 (46.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 199
++ S L V N P T ++L FE YG ++ +++++ F+ E ++ A
Sbjct: 74 SKASTKLHVGNISPTCTN-QELRAKFEAYGGLLRCFLKKDYIFIHLEREQPA 124
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 92 (37.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 49/153 (32%), Positives = 59/153 (38%)
Query: 293 RGSPDYGRNSSRSPYKKERAAIGHG--RGP-SRSPYRRDRGSPENGHGSS---PSPYRKG 346
RG P R SR P + R G G RGP SR + D G N + SS P P ++G
Sbjct: 94 RGPPPPPR--SRGPPRGLRGGRGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRG 151
Query: 347 KPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD--- 402
P P +G GP P +R PS P G P +P RD
Sbjct: 152 PP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYL 206
Query: 403 SP---GYDGADS------PINERYRSRSPPAED 426
SP GY DS P + R +PP D
Sbjct: 207 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 239
Score = 87 (35.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 90 (36.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 51/163 (31%), Positives = 60/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP SR + D G N + SS
Sbjct: 94 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSRGGHMDDGGYSMNFNMSS 144
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 145 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 199
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 200 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 242
Score = 87 (35.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 8 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 68 ARDMNGKSLD--GKAIKVE 84
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 8 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 65
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 66 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 97
>UNIPROTKB|E1C270 [details] [associations]
symbol:E1C270 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KPRSSHR
EMBL:AADN02019572 EMBL:AADN02019573 IPI:IPI00578317
ProteinModelPortal:E1C270 Ensembl:ENSGALT00000001462 Uniprot:E1C270
Length = 348
Score = 92 (37.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYM 96
M ++ G Y R+ D++R F YG++ VD+K+G+ +I M
Sbjct: 1 MPRVYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYVYINM 42
Score = 87 (35.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 37/144 (25%), Positives = 51/144 (35%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGS----PENGHG 337
R RS S RR R S R+ S+S + + + R SRS R+ R P++ G
Sbjct: 202 RRRSRSRSRRSRSSRSRSRSVSKSRSRSKSRSRSKDRSRSRSKSRKSRSKSKSKPKSDRG 261
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSM 397
S + + K R SRS R R EN N P++
Sbjct: 262 SRS--HSRSKEKSEKSRSRSRS---RSRSPKENGKGDTKSKSRSRSRSRSNSPQQQPSAK 316
Query: 398 PEPRDSPGYDGADSPINERYRSRS 421
P + S R +SRS
Sbjct: 317 ARSESPPKRAASRSRSRSRSKSRS 340
Score = 74 (31.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 37/133 (27%), Positives = 45/133 (33%)
Query: 290 RRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPS 349
R+ R D R+S R Y R+ R SRS RR R S S S R S
Sbjct: 175 RKIRLVEDKPRSSHRRSYSCSRSR-SRSRRRSRSRSRRSRSSRSRSRSVSKSRSRSKSRS 233
Query: 350 PNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDG- 408
+ R SRS + R S + S R SP +G
Sbjct: 234 RSKDRSRSRSKSRKSR-SKSKSKPKSDRGSRSHSRSKEKSEKSRSRSRSRSR-SPKENGK 291
Query: 409 ADSPINERYRSRS 421
D+ R RSRS
Sbjct: 292 GDTKSKSRSRSRS 304
Score = 73 (30.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 162 YHTRTRDLERHFEPYGKIISVRIRRNFAFV 191
YH R +D++R F YG+++ V ++ + ++
Sbjct: 11 YHVREKDIQRFFSGYGRLLEVDLKNGYVYI 40
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 90 (36.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 51/163 (31%), Positives = 60/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP SR + D G N + SS
Sbjct: 92 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 143 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 197
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 198 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Score = 87 (35.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 105 (42.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATR 201
+PS + + N P+ + +++ + F YG+I SVRI R F FV++ +E+A
Sbjct: 792 KPSSKIIIKNL-PFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKN 850
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
A++A S R + ++YA +D
Sbjct: 851 AMEALGNSHFYGRHLVLQYAEQD 873
Score = 83 (34.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV------DMKS--GFAFI-YMDDERDAEDAIRG 108
IF N Y ++ DLE++F ++GK+ + D K G AFI Y+ E +A A+
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPE-NAVQALND 421
Query: 109 LDRTEFGRKGRRLRV 123
+D F +GR + V
Sbjct: 422 MDGKVF--QGRLIHV 434
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 42/160 (26%), Positives = 72/160 (45%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KS-GFAFIYMDDERDAEDAIRGL 109
+F G+ D L+ F ++G+V + KS G+ F+ ++++AE+AI G+
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 110 DRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDL 169
+ G+ R +R W + + + +++V N T DL
Sbjct: 287 NGKWIGK--RAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQ-QTTDADL 343
Query: 170 ERHFEPYGKIISVRI--RRNFAFVQYEVQEDATRALDATN 207
F YG I VRI + +AFV+YE +E AT+A+ N
Sbjct: 344 RDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIMEMN 383
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 108 (43.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 16 VYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELD---- 71
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 72 GRTLCGCRVRVEMSNGE 88
Score = 52 (23.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/82 (31%), Positives = 31/82 (37%)
Query: 282 RVRSPSPY--RRDRGS----PDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRRDRGSPEN 334
R R P P RR R DY R SS + ++ R + R S S RR S
Sbjct: 92 RFRGPPPSWSRRPRDDYRRGDDYRRRSSPPARHRSPRRSFSRSRSRSLSRERRRERSLSR 151
Query: 335 GHGSSPSPYRKGKPSPN--NGR 354
PS G S + NGR
Sbjct: 152 DRNYKPSRSFSGSRSRSRSNGR 173
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 114 (45.2 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + ++E F +YG + V + GFAF+ +D RDAEDA R LD T
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRC 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GTRIRVE 80
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 92 (37.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 49/153 (32%), Positives = 59/153 (38%)
Query: 293 RGSPDYGRNSSRSPYKKERAAIGHG--RGP-SRSPYRRDRGSPENGHGSS---PSPYRKG 346
RG P R SR P + R G G RGP SR + D G N + SS P P ++G
Sbjct: 94 RGPPPPPR--SRGPPRGLRGGRGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRG 151
Query: 347 KPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD--- 402
P P +G GP P +R PS P G P +P RD
Sbjct: 152 PP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYL 206
Query: 403 SP---GYDGADS------PINERYRSRSPPAED 426
SP GY DS P + R +PP D
Sbjct: 207 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 239
Score = 87 (35.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Score = 81 (33.6 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 231 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 290
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 291 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 350
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 351 SMERGYPPPRDSYSSSSRGAP 371
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 103 (41.3 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLD 110
++ GN A + +LER YG + V + GFAF+ +D RDAED +RGLD
Sbjct: 16 VYVGNLGTGAGKGELERALSYYGSLRTVWIARNPPGFAFVEFEDPRDAEDLVRGLD 71
Score = 69 (29.3 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 28/83 (33%), Positives = 35/83 (42%)
Query: 287 SPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS--PSPYR 344
SP RR R R+ S+S +E + R SRS YR P + S PSP R
Sbjct: 126 SPQRRSRSR---SRSHSQS---REGSRYFQSRPRSRSKYR-SISLPRSSRSKSRSPSPKR 178
Query: 345 KGKP--SPNNGRGPSRSPYERER 365
P SP+ P+R R R
Sbjct: 179 SRSPAGSPHRSTSPARRGRRRRR 201
Score = 61 (26.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 282 RVRSPSPYRRDRGSPDY-GRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP 340
R RS S + GS + R SRS Y+ R SRSP + SP S
Sbjct: 132 RSRSRSHSQSREGSRYFQSRPRSRSKYRSISLPRS-SRSKSRSPSPKRSRSPAGSPHRST 190
Query: 341 SPYRKGK 347
SP R+G+
Sbjct: 191 SPARRGR 197
Score = 55 (24.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 28/88 (31%), Positives = 32/88 (36%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPY-KKERAAIG--H-GRGPSRSPYRRDRGSPENGHG 337
R RS S YR P R+ SRSP K+ R+ G H P+R RR R
Sbjct: 151 RPRSRSKYR-SISLPRSSRSKSRSPSPKRSRSPAGSPHRSTSPARRGRRRRRRRRRRRRR 209
Query: 338 SSPSPYRKGKPSPNNGRGPSRSPYERER 365
R GRG R R R
Sbjct: 210 RRRGRGRGRGRGRGRGRGRRRRRRRRRR 237
Score = 48 (22.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 19/61 (31%), Positives = 23/61 (37%)
Query: 316 HGRGPSRSPYRRDRGSPENGHGS--------SPSPYRKGKPSPNNGRGPSRSPYERERPS 367
H P R R R ++ GS S S YR P + R SRSP + S
Sbjct: 123 HRYSPQRRSRSRSRSHSQSREGSRYFQSRPRSRSKYRSIS-LPRSSRSKSRSPSPKRSRS 181
Query: 368 P 368
P
Sbjct: 182 P 182
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 98 (39.6 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDR 111
M ++ GN + + +LE FR +G V V + G+AF+ +D RDA DAIR LD
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALD- 59
Query: 112 TEFGRKGRRLRVEWTKHE 129
G+ G R+ + E
Sbjct: 60 ---GKNGWRVEQSHNRGE 74
Score = 69 (29.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 28/72 (38%), Positives = 33/72 (45%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 350
R+RG GR S+S + R + R PS Y R SP SP P R+ PSP
Sbjct: 115 RNRGGT--GRRRSKS---RSRTPPRYRRSPS---YGRRSYSPR---ARSPPPPRRRSPSP 163
Query: 351 N--NGRGPSRSP 360
GR SRSP
Sbjct: 164 PPARGRSYSRSP 175
Score = 64 (27.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 282 RVRSPSPYRRDRGSPD--YGRNSSRSPYK-KERAAIGHGRGPSRSPYRRDR 329
R RSP P RR SP GR+ SRSP + R + + G RR R
Sbjct: 149 RARSPPPPRRRSPSPPPARGRSYSRSPPPYRAREEVPYANGNGLKERRRSR 199
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 124 (48.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 46/184 (25%), Positives = 74/184 (40%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV------DMKS-GFAFIYMDDERDAEDAIRGLD 110
I+ N + + + E+LF +GK+ + D KS GF F+ +D A A+ L+
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 111 RTEFGRKGRRLRV--EWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRD 168
E G+++ V K E LFV N D +
Sbjct: 295 DKEIN--GQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDT-IDSEK 351
Query: 169 LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
LE F+P+G I S ++ + F FV + E+AT+A+ N + + + V A
Sbjct: 352 LEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411
Query: 222 VRDD 225
R D
Sbjct: 412 QRKD 415
Score = 57 (25.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 303 SRSPYKKERAAIGHGRGPSRSP--YRRDRGSPENGHGSSPSPYRKGKPSPN---NGRGPS 357
+R+ + + AA G G P Y + P NG G++P P G P+P GRG
Sbjct: 427 ARNQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPYP---G-PNPQMMMRGRGQP 482
Query: 358 RSPYERERPSP 368
P + RP P
Sbjct: 483 -FPEQWPRPGP 492
Score = 44 (20.5 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 319 GPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGP 356
GP+ R RG P P P G+P P G P
Sbjct: 469 GPNPQMMMRGRGQPFPEQWPRPGP--NGQPVPVYGIPP 504
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 104 (41.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDAT 200
+R TL+V F + TR RDL FE YG+++ I R FAFV+YE + DA
Sbjct: 2 SRGGTTLYVTGFS-HGTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDAD 60
Query: 201 RALDATNMSKL-TDRVISVEYA 221
A + +L D ++ +E+A
Sbjct: 61 EAYHDMHNKRLGRDDILKIEWA 82
Score = 98 (39.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSG----FAFIYMDDERDAEDAIRGLD 110
++ F + R DL F RYG++ R D+ +S FAF+ +D RDA++A +
Sbjct: 8 LYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDADEAYHDMH 67
Query: 111 RTEFGRKGRRLRVEWTK 127
GR L++EW +
Sbjct: 68 NKRLGRDDI-LKIEWAR 83
Score = 62 (26.9 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 29/77 (37%), Positives = 33/77 (42%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSP--ENGHGSSPSPYRKGKP 348
RDRGS D G S RSP + GR PS P RRD SP ++ R
Sbjct: 98 RDRGS-DRGDRSRRSPRR--------GRSPS-PPRRRDY-SPRKDDRRDRDRDRDRDYDR 146
Query: 349 SPNNGRGPSRSPYERER 365
R SRSP R+R
Sbjct: 147 DSRRDRDRSRSPDNRDR 163
Score = 59 (25.8 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 21/50 (42%), Positives = 23/50 (46%)
Query: 282 RVRSPSPYRRDRGSP--DYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR 329
R RSPSP RR SP D R+ R + R SRSP RDR
Sbjct: 114 RGRSPSPPRRRDYSPRKDDRRDRDRDRDRDYDRDSRRDRDRSRSPDNRDR 163
Score = 56 (24.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 317 GRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
GR R R DR G SPSP R+ SP R R +R+R
Sbjct: 95 GRDRDRGSDRGDRSRRSPRRGRSPSPPRRRDYSP---RKDDRRDRDRDR 140
Score = 46 (21.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSR-SP 324
D R RSP RDR D R+ R ++E G R P+ SP
Sbjct: 151 DRDRSRSPDNRDRDREMKDVDRDD-RD--RRENGTNGEDRKPAADSP 194
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 90 (36.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 51/163 (31%), Positives = 60/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP SR + D G N + SS
Sbjct: 92 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 143 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 197
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 198 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Score = 87 (35.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 85 (35.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 39/141 (27%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 291
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + D G P
Sbjct: 292 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQDRGLPP 351
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 352 SMERGYPPPRDSYSSSSRGAP 372
Score = 81 (33.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 90 (36.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 51/163 (31%), Positives = 60/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP SR + D G N + SS
Sbjct: 92 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 143 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 197
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 198 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Score = 87 (35.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Score = 81 (33.6 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 291
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 292 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 351
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 352 SMERGYPPPRDSYSSSSRGAP 372
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 90 (36.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 51/163 (31%), Positives = 60/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP SR + D G N + SS
Sbjct: 92 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 143 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 197
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 198 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Score = 87 (35.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Score = 81 (33.6 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 291
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 292 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 351
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 352 SMERGYPPPRDSYSSSSRGAP 372
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 90 (36.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 51/163 (31%), Positives = 60/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP SR + D G N + SS
Sbjct: 93 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSRGGHMDDGGYSMNFNMSS 143
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 144 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 198
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 199 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 241
Score = 87 (35.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 7 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 66
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 67 ARDMNGKSLD--GKAIKVE 83
Score = 81 (33.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 7 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 64
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 65 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 96
Score = 81 (33.6 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 233 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 292
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 293 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 352
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 353 SMERGYPPPRDSYSSSSRGAP 373
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 111 (44.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 118 GRRLRVE 124
G+R+ VE
Sbjct: 139 GKRINVE 145
Score = 86 (35.3 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 81 (33.6 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + +++AFV E + DA A+
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N ++ + I+VE + +
Sbjct: 133 NGKEVKGKRINVELSTK 149
Score = 55 (24.4 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSR-----SPYRR 327
+P PY R R SP R S PYKK A+ G R S YRR
Sbjct: 572 TPPPYERTRLSPP--RASYDDPYKKA-VAMSKRYGSDRRLAELSDYRR 616
Score = 50 (22.7 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 18/69 (26%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR G+ +G G + Y +
Sbjct: 517 RTQSSASLAASYAAQQHPQ--AAASYRGQPGNAYDGTGQPSAAYLSMSQGAVANANSTPP 574
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 575 PYERTRLSP 583
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 301 NSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP-----SPYRKGKPSPNN-GR 354
NS+ PY ER + R PY++ + +GS S YR+ S + R
Sbjct: 570 NSTPPPY--ERTRLSPPRASYDDPYKKAVAMSKR-YGSDRRLAELSDYRRLSESQLSFRR 626
Query: 355 GPSRSPYERER 365
P++S + R
Sbjct: 627 SPTKSSLDYRR 637
>UNIPROTKB|E2RS43 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016575 "histone deacetylation"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
Length = 669
Score = 111 (44.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 118 GRRLRVE 124
G+R+ VE
Sbjct: 139 GKRINVE 145
Score = 85 (35.0 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 81 (33.6 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + +++AFV E + DA A+
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N ++ + I+VE + +
Sbjct: 133 NGKEVKGKRINVELSTK 149
Score = 55 (24.4 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSR-----SPYRR 327
+P PY R R SP R S PYKK A+ G R S YRR
Sbjct: 572 TPPPYERTRLSPP--RASYDDPYKKA-VAMSKRYGSDRRLAELSDYRR 616
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 18/69 (26%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR G+ +G G + Y +
Sbjct: 517 RTQSSASLAASYAAQQHPQ--AAASYRGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPP 574
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 575 PYERTRLSP 583
Score = 38 (18.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 301 NSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP-----SPYRKGKPSPNN-GR 354
NS+ PY ER + R PY++ + +GS S YR+ S + R
Sbjct: 570 NSTPPPY--ERTRLSPPRASYDDPYKKAVAMSKR-YGSDRRLAELSDYRRLSESQLSFRR 626
Query: 355 GPSRSPYERER 365
P++S + R
Sbjct: 627 SPTKSSLDYRR 637
>UNIPROTKB|Q96PK6 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IPI] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
"response to hormone stimulus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
"DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
"transcription factor complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
GermOnline:ENSG00000173959 Uniprot:Q96PK6
Length = 669
Score = 111 (44.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 118 GRRLRVE 124
G+R+ VE
Sbjct: 139 GKRINVE 145
Score = 85 (35.0 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 81 (33.6 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + +++AFV E + DA A+
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N ++ + I+VE + +
Sbjct: 133 NGKEVKGKRINVELSTK 149
Score = 55 (24.4 bits), Expect = 8.6e-06, Sum P(3) = 8.6e-06
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSR-----SPYRR 327
+P PY R R SP R S PYKK A+ G R S YRR
Sbjct: 572 TPPPYERTRLSPP--RASYDDPYKKA-VAMSKRYGSDRRLAELSDYRR 616
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 18/69 (26%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR G+ +G G + Y +
Sbjct: 517 RTQSSASLAASYAAQQHPQ--AAASYRGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPP 574
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 575 PYERTRLSP 583
Score = 38 (18.4 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 301 NSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP-----SPYRKGKPSPNN-GR 354
NS+ PY ER + R PY++ + +GS S YR+ S + R
Sbjct: 570 NSTPPPY--ERTRLSPPRASYDDPYKKAVAMSKR-YGSDRRLAELSDYRRLSESQLSFRR 626
Query: 355 GPSRSPYERER 365
P++S + R
Sbjct: 627 SPTKSSLDYRR 637
>UNIPROTKB|I3LRW8 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:FP565487
Ensembl:ENSSSCT00000025710 OMA:SAPPRRY Uniprot:I3LRW8
Length = 188
Score = 90 (36.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 76 FRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
F +YG+V DR + +S GFAF+ D+RDAEDA+ +D GR LRV+ +
Sbjct: 1 FEKYGRVGDVYIPRDRYNKESRGFAFVRXHDKRDAEDAMDAMDGAVLD--GRELRVQMAR 58
Query: 128 H 128
+
Sbjct: 59 Y 59
Score = 74 (31.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 27/80 (33%), Positives = 34/80 (42%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERA---AIGHGRGPSRSPYRRDRG-SPENGHGSS 339
R P P R G YGR S RSP ++ R+ + R SRS Y R + S S
Sbjct: 70 RGPPPRRYGGGG--YGRRS-RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 126
Query: 340 PSPYRKGKPSPNNGRGPSRS 359
S R + S + SRS
Sbjct: 127 TSKSRSARRSKSKSSSVSRS 146
Score = 74 (31.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 30/111 (27%), Positives = 37/111 (33%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPYRKGKPSP 350
G P +S R P + G+GR SRSP RR R S S S Y + K S
Sbjct: 60 GRPPDSHHSRRGPPPRRYGGGGYGRR-SRSPRRRRRSRSRSRSRSRSRSRSRYSRSK-SR 117
Query: 351 NNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPR 401
+ R SRS + R P P S E +
Sbjct: 118 SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPASKRESK 168
Score = 70 (29.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 34/101 (33%), Positives = 42/101 (41%)
Query: 280 YGRVRSPSPYRRDRG---SPDYGRNSSRSPYKKERAAI---GHGRGPSRS-PYRRDRG-- 330
YGR RS SP RR R S R+ SRS Y + ++ R S+S RR +
Sbjct: 82 YGR-RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKS 140
Query: 331 -SPENGHGSSPSPYRKGKPSPNNGR-GPSRSPYERERPSPE 369
S S S R P P + R SRS + SPE
Sbjct: 141 SSVSRSRSRSRSRSRSRSPPPASKRESKSRSRSKSPPKSPE 181
Score = 67 (28.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 25/81 (30%), Positives = 33/81 (40%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RS S Y R + S R+ SRS K A + S S R S P+
Sbjct: 104 RSRSRSRYSRSK-SRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPA 162
Query: 342 PYRKGKPSPNNGRGPSRSPYE 362
R+ K S + + P +SP E
Sbjct: 163 SKRESK-SRSRSKSPPKSPEE 182
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 92 (37.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDR 111
M ++ GN + + +LE FR +G + V + G+AF+ +D RDA DAIR +D
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVD- 59
Query: 112 TEFGRKGRRL 121
G+ G R+
Sbjct: 60 ---GKNGWRV 66
Score = 72 (30.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/49 (42%), Positives = 24/49 (48%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYK-KERAAIGHGRGPSRSPYRRDR 329
R RSP P RR SP GRN SRSP + R + + G RR R
Sbjct: 148 RARSPPPPRRRSPSPR-GRNYSRSPPPYRARDEVPYANGNGLKDVRRSR 195
Score = 66 (28.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 27/70 (38%), Positives = 33/70 (47%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSP 350
R RG GR SRS + R+ + + P+ RR SP SP P R+ PSP
Sbjct: 112 RSRGGSG-GRRRSRS---RSRSPPRYRKSPTYGG-RRSY-SPR---ARSPPPPRRRSPSP 162
Query: 351 NNGRGPSRSP 360
GR SRSP
Sbjct: 163 R-GRNYSRSP 171
Score = 58 (25.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 34/122 (27%), Positives = 37/122 (30%)
Query: 299 GRNSSRSPYKKERAAIGHGRGPSRS--PYRRDRGSP--------ENGHGSSPSPYRKGKP 348
G+N R R G GRG R R RG E+GH + R G
Sbjct: 60 GKNGWRVEQSHNRGG-GGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSG 118
Query: 349 SPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDG 408
R SRSP R R SP R PSP R P Y
Sbjct: 119 GRRRSRSRSRSP-PRYRKSP-TYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPYRA 176
Query: 409 AD 410
D
Sbjct: 177 RD 178
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 111 (44.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 118 GRRLRVE 124
G+R+ VE
Sbjct: 139 GKRINVE 145
Score = 86 (35.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + +++AFV E + DA A+
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N ++ + I+VE + +
Sbjct: 133 NGKEVKGKRINVELSTK 149
Score = 53 (23.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 19/69 (27%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR GS +G G + Y +
Sbjct: 517 RTQSSASLAASYAAQQHPQ--AAASYRGQPGSAYDGTGQPSAAYLSMSQGAVANANSTPP 574
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 575 PYERTRLSP 583
Score = 50 (22.7 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSP 342
++ + YR GS G + Y + A+ + + PY R R SP S P
Sbjct: 535 QAAASYRGQPGSAYDGTGQPSAAYLSMSQGAVANANS-TPPPYERTRLSPPRA--SYDDP 591
Query: 343 YRK 345
Y+K
Sbjct: 592 YKK 594
>UNIPROTKB|J9NZ46 [details] [associations]
symbol:ZNF318 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR003604 InterPro:IPR007087
InterPro:IPR015880 PROSITE:PS00028 SMART:SM00355 SMART:SM00451
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 CTD:24149 OMA:QTKIRPN
EMBL:AAEX03008338 GeneTree:ENSGT00390000000614 RefSeq:XP_851845.2
Ensembl:ENSCAFT00000045907 GeneID:609493 KEGG:cfa:609493
Uniprot:J9NZ46
Length = 2283
Score = 140 (54.3 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 48/140 (34%), Positives = 59/140 (42%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGH-GRGPSRSPYRRDRGSPE--NGHGSSPS 341
S P RR P G +SSR+P ++ R+ GH GR S SP R RGSP G +SPS
Sbjct: 32 SSGPARR-ASPPPSGSSSSRNPARRPRSPSGHRGRRASPSPPRGRRGSPSPPRGRRASPS 90
Query: 342 PYR--KGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXD-NGRVPSPNSMP 398
P R + PSP R S SP R P +GR P
Sbjct: 91 PPRGRRVSPSPPRARRGSPSPPRGRRLFPPGSAGFRGSSRGESRADFSRDGRGDHPGDSG 150
Query: 399 EPRDSPGYDGADSPINERYR 418
R SPG +DS + + R
Sbjct: 151 SRRRSPGLR-SDSSLEQSLR 169
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 51/171 (29%), Positives = 81/171 (47%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
+F GN + + Q DL LF +G+V + + FAF+++ E A+ AIR L+ E+ +
Sbjct: 9 LFVGNLDLETTQDDLIALFAPFGEVVHITVLRQFAFVHLQGEGAADSAIRDLNGREY--R 66
Query: 118 GRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRP--SKTLFVINFDPYHTRTRDLERHFEP 175
GR L VE +K RP S +FV N DL F P
Sbjct: 67 GRSLVVEESKG--------------------RPLNSTKVFVGNLCA-SCSVEDLYDLFSP 105
Query: 176 YGKIIS---VRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRVISVE 219
YGK++ V+ + + +AFV E +EDA +A++ + + R ++VE
Sbjct: 106 YGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVE 156
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 34/77 (44%), Positives = 42/77 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKV---DRVDMK----SGFAFIYMDDERDAEDAIRGLD 110
+F GN DL LF YGKV D+V K +G+AF+YM+ + DAE AI GL
Sbjct: 85 VFVGNLCASCSVEDLYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLH 144
Query: 111 RTEFGRKGRRLRVEWTK 127
T F GR L VE +K
Sbjct: 145 GTTF--MGRPLAVELSK 159
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 103 (41.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV-R 223
DLE F YGK+ SV I N FAFV++E ++DA +A D N S+L + VE + R
Sbjct: 22 DLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISKGR 81
Query: 224 DDDDRRNG 231
RR G
Sbjct: 82 PRQGRRGG 89
Score = 93 (37.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN ++ DLE F +YGK++ V + GFAF+ + DAE A L+ +E
Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSEL 68
Query: 115 GRKGRRLRVEWTK 127
G +LRVE +K
Sbjct: 69 --LGSQLRVEISK 79
Score = 58 (25.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/68 (36%), Positives = 27/68 (39%)
Query: 299 GRNSSRSPYKKERAAIGHGRGPSRSP-YRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPS 357
G +S RS G G G +R Y R S GSS S R G S GR S
Sbjct: 131 GYSSGRSGASSYNGREGGGSGFNRREVYGGGRDSSRYSSGSSASYGRTGGQSA--GRFRS 188
Query: 358 RSPYERER 365
RSP R
Sbjct: 189 RSPVGNHR 196
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 117 (46.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114
M +F GN +A + ++ LF +YGKV D+ + F++++D+ AEDAIR L +
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL 60
Query: 115 GRKGRRLRVEWTKHE 129
G + VE +K++
Sbjct: 61 --HGVNINVEASKNK 73
Score = 53 (23.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207
++ S L V N P T + L F YG+ + I ++F FV + ++ AL ++
Sbjct: 74 SKTSTKLHVGNISPTCTN-KSLRSKFLCYGRAFILDIFKDFFFVHQQKKKKKVHALRISD 132
Query: 208 MS 209
++
Sbjct: 133 LT 134
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 87 (35.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 87 (35.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 44/146 (30%), Positives = 52/146 (35%)
Query: 293 RGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNN 352
RG P R SR P + R G G +R P RGS G P P ++G P P +
Sbjct: 95 RGPPPPPR--SRGPPRGLRG--GRGGSGARGP--PSRGS-HLGSSRGPLPMKRGPP-PRS 146
Query: 353 GRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD---SP----- 404
G GP P +R PS G P MP RD SP
Sbjct: 147 G-GP---PPKRSAPSGPVRSSSMGGRAPVSRGRDSYGGPPRREPMPSRRDVYMSPRDDGY 202
Query: 405 ----GYDGADSPINERYRSRSPPAED 426
GY D P + R +PP D
Sbjct: 203 STKDGYSSRDYPSSRDTRDYAPPPRD 228
Score = 81 (33.6 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 46/157 (29%), Positives = 55/157 (35%)
Query: 281 GRVRSPSPYRRDRGSPDY---GRNSSRSPYKKERAA-IGHGRGP---SRSPYRRDRGSPE 333
GR R P P R RG P GR S + R + +G RGP R P R G P
Sbjct: 93 GR-RGPPPPPRSRGPPRGLRGGRGGSGARGPPSRGSHLGSSRGPLPMKRGPPPRSGGPPP 151
Query: 334 NGHGSSPS-PYRK----GKPSPNNGRGPSRSPYERE-RPSPENXXXXXXXXXXXXXXXXD 387
S+PS P R G+ + GR P RE PS +
Sbjct: 152 KR--SAPSGPVRSSSMGGRAPVSRGRDSYGGPPRREPMPSRRDVYMSPRDDGYSTKDGYS 209
Query: 388 NGRVPSPNSM----PEPRDSPGYDGADSPINERYRSR 420
+ PS P PRD D S + Y SR
Sbjct: 210 SRDYPSSRDTRDYAPPPRDYAYRDYGHSSSRDEYPSR 246
Score = 80 (33.2 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 28/83 (33%), Positives = 37/83 (44%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVR 223
A N L + I VE A +
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATK 86
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 95 (38.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDA 205
+NTR LFV F P + +L F P+G + V+I FAFV++E E A +A++
Sbjct: 123 SNTR----LFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 177
Query: 206 TNMSKLTDRVISVEYA 221
+ ++ + V Y+
Sbjct: 178 VHGKSFANQPLEVVYS 193
Score = 80 (33.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
+F F D ++S+L +F +G + V + +GFAF+ ++ A AI + F +
Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQ 186
Query: 118 GRRLRVEWTK 127
L V ++K
Sbjct: 187 P--LEVVYSK 194
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/70 (35%), Positives = 29/70 (41%)
Query: 299 GRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSR 358
G +S R Y R G+ RG P R D G P +G S R G P GP R
Sbjct: 346 GYDSPRGGYDSPRG--GYSRGGYGGP-RNDYGPPRGSYGGS----RGGYDGPRGDYGPPR 398
Query: 359 SPYERERPSP 368
Y R R +P
Sbjct: 399 DAY-RTRDAP 407
Score = 73 (30.8 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 27/76 (35%), Positives = 29/76 (38%)
Query: 294 GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRG---SPENGHGSSPSPY-RKGKPS 349
G P G R Y G+G G SR Y RG SP G+ S Y R G
Sbjct: 311 GGPRGGFGGPRGGYGGYSRG-GYG-GYSRGGYGGSRGGYDSPRGGYDSPRGGYSRGGYGG 368
Query: 350 PNNGRGPSRSPYERER 365
P N GP R Y R
Sbjct: 369 PRNDYGPPRGSYGGSR 384
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 123 (48.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SG--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D+E FR+YG + + D+K SG FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 113 EFGRKGRRLRVE 124
+F +G +LRVE
Sbjct: 70 DF--EGNKLRVE 79
Score = 43 (20.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS-PYKKERA---AIGHGRGPSRSPYRRDRGSPENGH 336
R RS S RR R + D R+ SRS Y++ R I R SR+ R S + H
Sbjct: 241 RSRSRSMDRR-RDTYDKKRSYSRSLSYQERRRNNRTISKSRSRSRTNSRSSSWSHKRRH 298
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 123 (48.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SG--FAFIYMDDERDAEDAIRGLDRT 112
I+ GN D+E FR+YG + + D+K SG FAFI +D RDA DAI+ D
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 113 EFGRKGRRLRVE 124
+F +G +LRVE
Sbjct: 70 DF--EGNKLRVE 79
Score = 43 (20.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRS-PYKKERA---AIGHGRGPSRSPYRRDRGSPENGH 336
R RS S RR R + D R+ SRS Y++ R I R SR+ R S + H
Sbjct: 241 RSRSRSMDRR-RDTYDKKRSYSRSLSYQERRRNNRTISKSRSRSRTNSRSSSWSHKRRH 298
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 101 (40.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SG--FAFIYMDDERDAEDAIRGLDRTE 113
++ G + Q +L F +YG + R D+K +G +AF+ + RDA+DA++ L+ T
Sbjct: 3 LYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTT 62
Query: 114 FGRKGRRLRVEWTK 127
++ VEW K
Sbjct: 63 L--LNSKISVEWAK 74
Score = 92 (37.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 164 TRTRDLERHFEPYGKIISVRIRRN----FAFVQYEVQEDATRALDATNMSKLTDRVISVE 219
T ++L HF YG I +++ +AFV+Y+ + DA AL A N + L + ISVE
Sbjct: 12 TTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTTLLNSKISVE 71
Query: 220 YA 221
+A
Sbjct: 72 WA 73
Score = 68 (29.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 39/143 (27%), Positives = 51/143 (35%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDR---GSPENGHGS 338
R RSPS RRDR S D R+ SR ++R+ R R RDR G E
Sbjct: 122 RYRSPSWDRRDR-SRDRSRDRSRDR-SRDRSRDRRDRRRDRRDRSRDRSRDGRRERSRDR 179
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMP 398
S R + + + R SR R+R D R S ++
Sbjct: 180 SRDRSRDARRNRDTSRDRSRDR-SRDRSRDGGNIIRDTSRDRRRNNSRDRSRDRSRSNGG 238
Query: 399 EPRDSPGYDGADSPINERYRSRS 421
R S D + +R R RS
Sbjct: 239 GSRYSSRRDRSRDRSRDRSRDRS 261
Score = 56 (24.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 23/69 (33%), Positives = 32/69 (46%)
Query: 290 RRDRG---SPDYGRNSSRSPYKKER---AAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
RRDR S D R+ SRS KKE+ +++ R + D G+ NG+G S
Sbjct: 245 RRDRSRDRSRDRSRDRSRS-LKKEKKRDSSLSKERIAAGDAASADSGNNANGNGRSRERS 303
Query: 344 RKGKPSPNN 352
R S +N
Sbjct: 304 RSRSRSNSN 312
Score = 55 (24.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 32/93 (34%), Positives = 35/93 (37%)
Query: 283 VRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR-RDRG---SPENGHGS 338
+R S RR S D R+ SRS R + R RS R RDR E S
Sbjct: 213 IRDTSRDRRRNNSRDRSRDRSRSNGGGSRYSSRRDRSRDRSRDRSRDRSRSLKKEKKRDS 272
Query: 339 SPSPYR------KGKPSPNNGRGPSRSPYERER 365
S S R S NN G RS ER R
Sbjct: 273 SLSKERIAAGDAASADSGNNANGNGRSR-ERSR 304
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---G--FAFIYMDDERDAEDAI 106
I+ GN D R D+E +F +YG + +D+K+ G FAF+ +D RDAEDA+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 71
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 87 (35.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 86 (35.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 48/150 (32%), Positives = 60/150 (40%)
Query: 286 PSPYRRDRGSPDYGRNSSRSP---YKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS-- 339
PS R G P R SR P + R G RGP SR + D G N + SS
Sbjct: 87 PSFERGRHGPPPPPR--SRGPPRGFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSR 144
Query: 340 -PSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDN-GRVPSPNSM 397
P P ++G P P +G GPS P +R PS D+ G P +
Sbjct: 145 GPLPVKRGPP-PRSG-GPS--P-KRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPL 199
Query: 398 PEPRD---SPGYDGADSPINERYRSRSPPA 424
P RD SP DG + + Y SR P+
Sbjct: 200 PSRRDVYLSPRDDGYST--KDSYSSRDYPS 227
Score = 86 (35.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 31/92 (33%), Positives = 42/92 (45%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDDDDR-RNG 231
A N L + I VE A + +R R+G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFERGRHG 95
Score = 72 (30.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 32/98 (32%), Positives = 38/98 (38%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGR---GPSRSP-Y-------RRD 328
YG RS +P R P YG +S Y R G R SRS Y R++
Sbjct: 288 YGNSRS-APLTRGP-PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQE 345
Query: 329 RGSP---ENGHGSSPSPYRKGKPSPNNGRGPSRSPYER 363
RG P E G+ SS Y G GP S +R
Sbjct: 346 RGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDR 383
Score = 71 (30.1 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 28/79 (35%), Positives = 34/79 (43%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
R +P RD DYG +SSR Y G+G R Y RDR ++ G S Y
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSR----GYG---DRDGYGRDRDYSDHPSGGS---Y 281
Query: 344 RKGKPSPNNGRG-P-SRSP 360
R S N R P +R P
Sbjct: 282 RDSYESYGNSRSAPLTRGP 300
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 85 (35.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 36/89 (40%), Positives = 41/89 (46%)
Query: 282 RVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP 340
R RS S YRR R SP R+ S SP + ++ R SRS R R SS
Sbjct: 154 RSRSAS-YRRSRSVSPR--RSRSVSPRRSRSGSLKRSRSRSRS---RSRSRSVTWPRSSR 207
Query: 341 SPYRKGKPSPNNGRGPSRSPYERERPSPE 369
S R PSP R PS SP +R SPE
Sbjct: 208 SKSRS--PSPKRSRSPSGSP-QRSA-SPE 232
Score = 82 (33.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 27/81 (33%), Positives = 36/81 (44%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKP 348
Y R R S GR S + Y++ R+ + R S SP R GS + S S R
Sbjct: 143 YSRSR-SRSRGRRSRSASYRRSRS-VSPRRSRSVSPRRSRSGSLKRSRSRSRSRSRSRSV 200
Query: 349 S-PNNGRGPSRSPYERERPSP 368
+ P + R SRSP + SP
Sbjct: 201 TWPRSSRSKSRSPSPKRSRSP 221
Score = 81 (33.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN A + +LER F YG + V + GFAF+ +D RDA+ ++
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAKPLLKSSKSRVI 72
Query: 115 GRKGRRLRVE 124
G R+RVE
Sbjct: 73 C--GSRVRVE 80
Score = 77 (32.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 27/74 (36%), Positives = 32/74 (43%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSP-YRRDRG-SPENGHGSSPSPYRK 345
Y R R S R+ SRS ++ + RG SRS YRR R SP SP R
Sbjct: 122 YSRRRRSRSRSRSRSRSRGRRYSRSRSRSRGRRSRSASYRRSRSVSPRRSRSVSPRRSRS 181
Query: 346 GKPSPNNGRGPSRS 359
G + R SRS
Sbjct: 182 GSLKRSRSRSRSRS 195
Score = 71 (30.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRALDATNMSKLTDRVISVE 219
+LER F YG + +V I RN FAFV++E DA L ++ + + VE
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAKPLLKSSKSRVICGSRVRVE 80
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 87 (35.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 85 (35.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 50/163 (30%), Positives = 59/163 (36%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS 339
GR R P P R RG P R R G RGP S + D G N + SS
Sbjct: 92 GR-RGPPPPPRSRGPPRGLRGG--------RGGSGGTRGPPSHGGHMDDGGYSMNFNMSS 142
Query: 340 ---PSPYRKGKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPN 395
P P ++G P P +G GP P +R PS P G P
Sbjct: 143 SRGPLPVKRGPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRRE 197
Query: 396 SMPEPRD---SP---GYDGADS------PINERYRSRSPPAED 426
+P RD SP GY DS P + R +PP D
Sbjct: 198 PLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Score = 81 (33.6 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 291
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 292 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 351
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 352 SMERGYPPPRDSYSSSSRGAP 372
Score = 81 (33.6 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
>FB|FBgn0027548 [details] [associations]
symbol:nito "spenito" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0048749 "compound eye
development" evidence=IMP] [GO:0030177 "positive regulation of Wnt
receptor signaling pathway" evidence=IGI] [GO:0035222 "wing disc
pattern formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 HSSP:P19339 GO:GO:0071011 GO:GO:0000398
InterPro:IPR012921 Pfam:PF07744 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 GeneTree:ENSGT00530000063730
EMBL:AF145664 RefSeq:NP_610339.1 RefSeq:NP_724633.1 UniGene:Dm.2130
SMR:Q7KMJ6 IntAct:Q7KMJ6 STRING:Q7KMJ6 EnsemblMetazoa:FBtr0088857
EnsemblMetazoa:FBtr0088858 GeneID:35756 KEGG:dme:Dmel_CG2910
UCSC:CG2910-RA CTD:35756 FlyBase:FBgn0027548 InParanoid:Q7KMJ6
OMA:CKVELSG OrthoDB:EOG4W3R31 GenomeRNAi:35756 NextBio:795063
Uniprot:Q7KMJ6
Length = 793
Score = 78 (32.5 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK 88
R +F GN E +L R+F +YG VD +D+K
Sbjct: 314 RTLFAGNLEVTIADDELRRIFGKYGVVDDIDIK 346
Score = 72 (30.4 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 35/125 (28%), Positives = 44/125 (35%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPY 361
SS+ PY + +A+ + R P PY + + G SP P R G RG R Y
Sbjct: 480 SSKPPY--DESALEYRR-PEYDPYYEESAAYAPRGGYSPYPPRGGYRGRGGYRGRGRGMY 536
Query: 362 ----ERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERY 417
+ RP D R P P E D + P ER
Sbjct: 537 HYHNDVHRPPHPGSLAGSSSSVPPPGGVEDEWRRP-PG---ESYDRGARSSSREPGVERS 592
Query: 418 RSRSP 422
RSRSP
Sbjct: 593 RSRSP 597
Score = 70 (29.7 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 164 TRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRAL 203
T LER F+ +G I + ++ +A++QYE E AT A+
Sbjct: 406 TSVTQLEREFDRFGAIKKIEYQKGEPYAYIQYETVEAATAAV 447
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 92 (37.4 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDAT 206
R + + V NF Y T+T DL + FEP+G+I + + + A V + ++A +A +
Sbjct: 475 RGNLAILVKNFS-YGTKTEDLRKLFEPFGQITRLLMPPSGTIAIVAFARPDEAQKAFKSL 533
Query: 207 NMSKLTDRVISVEYAVRD 224
KL D ++ +E A +D
Sbjct: 534 AYRKLGDSILFLEKAPKD 551
Score = 87 (35.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGL 109
+F N Y+ ++S+LE +F +GK++ + + GFA++ D A +A R L
Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356
Query: 110 DRTEFGRKGRRLRV 123
D F +GR L +
Sbjct: 357 DGKIF--QGRLLHI 368
Score = 78 (32.5 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALD 204
+T +I P+ +D+ F YG++ SVR+ R F F + +A A+D
Sbjct: 696 RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMD 755
Query: 205 ATNMSKLTDRVISVEYA 221
A + L R + +E+A
Sbjct: 756 ALKNTHLLGRRLVLEFA 772
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 104 (41.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 201
P+ +LFV N TR+ DL R F YG I+ V R R FA+VQ+E DA
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL + + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 21/67 (31%), Positives = 26/67 (38%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKG--KPSPNN 352
S R+ S+S KKE A R S + R + H S S Y K K P
Sbjct: 175 SKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPR 234
Query: 353 GRGPSRS 359
+ SRS
Sbjct: 235 SKSQSRS 241
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 104 (41.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 201
P+ +LFV N TR+ DL R F YG I+ V R R FA+VQ+E DA
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL + + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 21/67 (31%), Positives = 26/67 (38%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKG--KPSPNN 352
S R+ S+S KKE A R S + R + H S S Y K K P
Sbjct: 175 SKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPR 234
Query: 353 GRGPSRS 359
+ SRS
Sbjct: 235 SKSQSRS 241
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 104 (41.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 201
P+ +LFV N TR+ DL R F YG I+ V R R FA+VQ+E DA
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL + + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 21/67 (31%), Positives = 26/67 (38%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKG--KPSPNN 352
S R+ S+S KKE A R S + R + H S S Y K K P
Sbjct: 175 SKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKSGSRYEKESRKKEPPR 234
Query: 353 GRGPSRS 359
+ SRS
Sbjct: 235 SKSQSRS 241
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 100 (40.3 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--GFAFIYMDDERDAEDAIRGLDRTEFG 115
++ G+ + +SDL LF RYG +DR+ + S GFAFIY R E+A+ + +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYY---RHVEEAVAAKEALQGA 76
Query: 116 R-KGRRLRVEWTK 127
G ++++E+ +
Sbjct: 77 NLNGSQIKIEYAR 89
Score = 76 (31.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RRNFAFVQYEVQEDATRA 202
+P K+L+V P ++ DLE F +GKI R R AF+ Y +DA +A
Sbjct: 92 KPCKSLWVGGIGPNVSKD-DLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA 146
Score = 62 (26.9 bits), Expect = 0.00063, Sum P(3) = 0.00063
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 147 NTRPSKTLFVINFDPYHTRTRD---LERHFEPYGKIISVRI--RRNFAFVQYEVQEDATR 201
+ +PSK L+ I F P T+ D L +G+I V+ RNFA V++ E+A +
Sbjct: 201 DVQPSKVLW-IGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQ 259
Query: 202 ALDATNMSKLTDRVISVEYA 221
+ + I + Y+
Sbjct: 260 CKEGLQGRLFNNPRIKIMYS 279
Score = 43 (20.2 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 389 GRVPSPNSM-PEPRDSPGYDGADSPINERYRSRS 421
G++P P S P ++P Y N +Y+S+S
Sbjct: 718 GQLPPPPSRYPPASNNPNYTSGMVHGNMQYQSQS 751
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 111 (44.1 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRK 117
IF GN +L LF R G+V D+ +AF++M+ E DA+ AI L+ E K
Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--K 138
Query: 118 GRRLRVE 124
G+R+ VE
Sbjct: 139 GKRINVE 145
Score = 86 (35.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 81 (33.6 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + +++AFV E + DA A+
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N ++ + I+VE + +
Sbjct: 133 NGKEVKGKRINVELSTK 149
Score = 49 (22.3 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 18/69 (26%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR G+ +G G + Y +
Sbjct: 517 RTQSSASLAASYAAQQHPQ--AAASYRGQPGNAYDGTGQPSAAYLSMSQGVVANANSTPP 574
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 575 PYERTRLSP 583
Score = 47 (21.6 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPY 343
++ + YR G+ G + Y + + PY R R SP S PY
Sbjct: 535 QAAASYRGQPGNAYDGTGQPSAAYLSMSQGVVANANSTPPPYERTRLSPPRA--SYDDPY 592
Query: 344 RK 345
+K
Sbjct: 593 KK 594
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 86 (35.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATRALD 204
+L V+N + T DL F YGK++ V I R+ FAFV+Y+ +++A +A++
Sbjct: 17 SLLVLNIT-FRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 205 ATNMSKLTDRVISVEYA 221
+ + R I+V++A
Sbjct: 76 RLDGRVVDGREITVQFA 92
Score = 82 (33.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 37/112 (33%), Positives = 41/112 (36%)
Query: 291 RDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPS 349
R R SPD R R Y E + H R S SP RR SP + SP R+ P
Sbjct: 185 RSRSASPDEKRRV-RGRYDNESRS--HSRSLSASPARR---SPRSSSPQKTSPAREVSPD 238
Query: 350 PNNGRGPSRSPYERERPSPENXXXXXXXXXXXXX-XXXDNGRVPSPNSMPEP 400
R RSP R SP + N R PSP S P P
Sbjct: 239 K---RSNERSPSPRRSLSPRSPALQKASPSKEMSPERRSNERSPSPGS-PAP 286
Score = 79 (32.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 32/96 (33%), Positives = 42/96 (43%)
Query: 282 RVRSPSPYRRDRGSPD-----YGRNSSRSPYKKE-RAAIGHGRGPSR--SPYRR-DRGSP 332
R SP RR RG D + R+ S SP ++ R++ P+R SP +R + SP
Sbjct: 187 RSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSP 246
Query: 333 ENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSP 368
SP K SP+ P R ER PSP
Sbjct: 247 SPRRSLSPRSPALQKASPSKEMSPERRSNERS-PSP 281
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 103 (41.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 50 FEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGL 109
F + R ++ G + LE F ++GKV D+K+G+AF+ D+E+ A DAI +
Sbjct: 169 FSLLAERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNGYAFVEFDNEKSARDAIEEM 228
Query: 110 -DRTEFGRK 117
D G K
Sbjct: 229 HDSIVDGEK 237
Score = 67 (28.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 25/90 (27%), Positives = 34/90 (37%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYR---RDRGSPENGHGSSP 340
R +PY + + + GRN RS Y + R+ R + YR RDR +G
Sbjct: 321 RRYNPYNNNNNNNN-GRNRDRS-YSRSRSRSPRYRSNGGNRYRDRSRDRSRDRSGDRRGG 378
Query: 341 SPYRKGKPSPNNGRGPSRSPYERERPSPEN 370
S R G+ R ER R N
Sbjct: 379 SDRRSGRDRSTERRRERSKSNERRREREGN 408
Score = 66 (28.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 27/73 (36%), Positives = 31/73 (42%)
Query: 280 YGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
Y R RS SP R G Y R+ SR + R G RG S RDR S E S
Sbjct: 342 YSRSRSRSPRYRSNGGNRY-RDRSRD---RSRDRSGDRRGGSDRRSGRDR-STERRRERS 396
Query: 340 PSPYRKGKPSPNN 352
S R+ + NN
Sbjct: 397 KSNERRREREGNN 409
>UNIPROTKB|F1S0E2 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:CU469321 Ensembl:ENSSSCT00000004768 Uniprot:F1S0E2
Length = 240
Score = 83 (34.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 68 RQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGLDRTEFGRKGR 119
R DL R F RYG + V D + GFA++ +D RDAEDA+ L+R GR
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVC--GR 58
Query: 120 RLRVEWTK 127
++ +++ +
Sbjct: 59 QIEIQFAQ 66
Score = 82 (33.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 165 RTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216
R DL R F YG I+ V I R FA+VQ+E DA AL N + R I
Sbjct: 1 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQI 60
Query: 217 SVEYAVRD 224
+++A D
Sbjct: 61 EIQFAQGD 68
Score = 81 (33.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 37/138 (26%), Positives = 56/138 (40%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKE----RAAIGHGRGPSRSPYRRDRGSPEN 334
D+ R RSPS R S +GRN RS KE R + + S+S RR + +
Sbjct: 87 DHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRCSYSQSKSRSKSLPRRSTSARQ- 145
Query: 335 GHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSP 394
S +P R S + GR S+S +R + ++ +GR S
Sbjct: 146 ----SRTPRRN---SGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR-HSD 197
Query: 395 NSMPEPRDSP-GYDGADS 411
+ P SP GY +++
Sbjct: 198 SIARSPCKSPKGYTNSET 215
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 108 (43.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEF 114
++ GN + +++LER F YG + V + GFAF+ +D RDA DA+R LD
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELD---- 67
Query: 115 GRK--GRRLRVEWTKHE 129
GR G R+RVE + E
Sbjct: 68 GRTLCGCRVRVELSNGE 84
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRS 305
D R RS S R + S + R+ SRS
Sbjct: 132 DRRRERSLSRERNHKPSRSFSRSRSRS 158
>UNIPROTKB|E9PTC9 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00781602 Ensembl:ENSRNOT00000054844 ArrayExpress:E9PTC9
Uniprot:E9PTC9
Length = 615
Score = 86 (35.3 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 74 (31.1 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + + ++F + Q DA A
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKVYSFAHLDKQADAEPACMCL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N S+++ + I+VE + +
Sbjct: 133 NRSEVSGKRINVELSTK 149
Score = 53 (23.7 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 19/69 (27%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR GS +G G + Y +
Sbjct: 515 RTQSSASLAASYAAQQHPQ--AAASYRGQPGSAYDGTGQPSAAYLSMSQGAVANANSTPP 572
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 573 PYERTRLSP 581
Score = 51 (23.0 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 20/78 (25%), Positives = 29/78 (37%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSP 342
++ + YR GS G + Y + A+ + + PY R R SP S P
Sbjct: 533 QAAASYRGQPGSAYDGTGQPSAAYLSMSQGAVANANS-TPPPYERTRLSPPRA--SYDDP 589
Query: 343 YRKGKPSPNNGRGPSRSP 360
Y+K P SP
Sbjct: 590 YKKAVAMSKRYCMPPLSP 607
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 97 (39.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KS-GFAFIYMDDERDAEDAIR 107
+ +F YD ++SD+ER F RYG ++R+ + KS G+AF+ + ERD + A +
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYK 159
Query: 108 GLDRTEFGRKGRRLRVE 124
GRR+ V+
Sbjct: 160 A--SAGLMLNGRRIVVD 174
Score = 88 (36.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--------FAFVQYEVQEDATR 201
P KT+F+ Y T+ D+ER F YG I +R+ RN +AFV +E + D
Sbjct: 98 PYKTMFLSRLS-YDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKV 156
Query: 202 ALDATNMSKLTDRVISVE 219
A A+ L R I V+
Sbjct: 157 AYKASAGLMLNGRRIVVD 174
Score = 65 (27.9 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKE-RAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
GR + RR+RGS G + R Y+ R + G G R P R S G SS
Sbjct: 195 GRHYTKERPRRERGSRFRGDSGFRGGYRGGFRKSSGGGSRFGRGPTRSSHSSDYGGRDSS 254
Query: 340 PSPYR 344
P R
Sbjct: 255 PKRRR 259
Score = 60 (26.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 308 KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKG--KPSPNN---GRGPSRSPYE 362
+K +G GR ++ RR+RGS G YR G K S GRGP+RS +
Sbjct: 187 RKLGGGLG-GRHYTKERPRRERGSRFRGDSGFRGGYRGGFRKSSGGGSRFGRGPTRSSHS 245
Query: 363 RE 364
+
Sbjct: 246 SD 247
>UNIPROTKB|E9PTZ4 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003676 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
IPI:IPI00948500 Ensembl:ENSRNOT00000026621 ArrayExpress:E9PTZ4
Uniprot:E9PTZ4
Length = 667
Score = 86 (35.3 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 58 IFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGR 116
IF GN + D +L LF YG V + FAF++M + A AI L E R
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHEL-R 61
Query: 117 KGRRLRVEWTK 127
GR L VE ++
Sbjct: 62 PGRALVVEMSR 72
Score = 74 (31.1 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 149 RPSKT--LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206
RP T +FV N T +++L FE G++I + + ++F + Q DA A
Sbjct: 74 RPLNTWKIFVGNVSAACT-SQELRSLFERRGRVIECDVVKVYSFAHLDKQADAEPACMCL 132
Query: 207 NMSKLTDRVISVEYAVR 223
N S+++ + I+VE + +
Sbjct: 133 NRSEVSGKRINVELSTK 149
Score = 53 (23.7 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 19/69 (27%), Positives = 26/69 (37%)
Query: 300 RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRS 359
R S + AA H + + + YR GS +G G + Y +
Sbjct: 515 RTQSSASLAASYAAQQHPQ--AAASYRGQPGSAYDGTGQPSAAYLSMSQGAVANANSTPP 572
Query: 360 PYERERPSP 368
PYER R SP
Sbjct: 573 PYERTRLSP 581
Score = 50 (22.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPY-KKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSP 342
++ + YR GS G + Y + A+ + + PY R R SP S P
Sbjct: 533 QAAASYRGQPGSAYDGTGQPSAAYLSMSQGAVANANS-TPPPYERTRLSPPRA--SYDDP 589
Query: 343 YRK 345
Y+K
Sbjct: 590 YKK 592
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 87 (35.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNS 291
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 292 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP 351
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 352 SMERGYPPPRDSYSSSSRGAP 372
Score = 81 (33.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 81 (33.6 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSK 210
T +V N PY T+ D+ F+ +G +I R++ R FAF++ + E+A A+ N
Sbjct: 309 TCYVGNLTPYTTQN-DIVPLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYN 367
Query: 211 LTDRVISVEY 220
+ R + +
Sbjct: 368 VNGRPLKCSW 377
Score = 75 (31.5 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 26/101 (25%), Positives = 38/101 (37%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVD--RV--DMKSG----FAFIYMDDERDAEDAIRGL 109
IF G+ + L + F +G V RV DMK+G + F+ + DAE A+ +
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 110 DRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRP 150
D G R +R W + T T P
Sbjct: 244 DGEWLG--SRAIRCNWANQKGQPSISQQQAMAAMGMTPTTP 282
Score = 51 (23.0 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKER-------AAIGHGRGPSRSPYRRDRGSPENG 335
SP PY G P G + + P + R A G G+ P + Y R + +P +G
Sbjct: 402 SPGPYFPQYGGPG-GPMTPQGPAQAGRGWEQPQMAQQGFGQVPGNTGYGRGQATPNSG 458
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 302 SSRSPYKKERAAIGHGRGPSRSPYRRDRG--SPE---NGHGSSP--SPYRKGKPSPNNG 353
SS PY + G P + P + RG P+ G G P + Y +G+ +PN+G
Sbjct: 401 SSPGPYFPQYGGPGGPMTP-QGPAQAGRGWEQPQMAQQGFGQVPGNTGYGRGQATPNSG 458
>TAIR|locus:2043172 [details] [associations]
symbol:AT2G29210 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0009294 "DNA mediated
transformation" evidence=RCA] InterPro:IPR002483 Pfam:PF01480
PROSITE:PS51025 SMART:SM00311 EMBL:CP002685 GO:GO:0008380
GO:GO:0006397 Gene3D:1.20.1390.10 SUPFAM:SSF101233 KO:K13171
eggNOG:NOG242213 EMBL:AY125501 EMBL:BT000633 IPI:IPI00546855
RefSeq:NP_180484.2 UniGene:At.25482 SMR:Q8L7W3 IntAct:Q8L7W3
STRING:Q8L7W3 EnsemblPlants:AT2G29210.1 GeneID:817470
KEGG:ath:AT2G29210 TAIR:At2g29210 HOGENOM:HOG000148632
InParanoid:Q8L7W3 OMA:HAGEESP ProtClustDB:CLSN2721845
Genevestigator:Q8L7W3 Uniprot:Q8L7W3
Length = 878
Score = 128 (50.1 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 55/146 (37%), Positives = 58/146 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPS 341
R RSPSP R R SP RSP R R PS P RR R P SPS
Sbjct: 319 RRRSPSPPARRRRSPSPPARRHRSPTPPARQR----RSPS-PPARRHRSPPPARRRRSPS 373
Query: 342 P--YRKGKPSPNNGRGPSRSP-YERER-PSPENXXXXXXXXXXXXXXXXDNGRVPSPNSM 397
P R+ PSP R S SP Y R R PSP GR PSP +
Sbjct: 374 PPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGRSPSP--V 431
Query: 398 PEPRDSPGYDGADSPINERYRSRSPP 423
RD G SP E+ R SPP
Sbjct: 432 ARLRDPTGAR-LPSPSIEQ-RLPSPP 455
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 53/154 (34%), Positives = 61/154 (39%)
Query: 282 RVRSPSP-YRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPS-----RSPYRRDRGSP-- 332
R RSPSP YRR+R SP Y RN SRSP K + GR PS R P SP
Sbjct: 388 RRRSPSPLYRRNRSPSPLYRRNRSRSPLAKRGRSDSPGRSPSPVARLRDPTGARLPSPSI 447
Query: 333 ENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
E S P R P P PS P +R P ++ P
Sbjct: 448 EQRLPSPPVAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESP 507
Query: 393 SPNSMPEPRDSPGYDGA-DSPINERYRSRSPPAE 425
SP+S+ P PG SP R RS +P E
Sbjct: 508 SPSSL-SP---PGRKKVLPSPPVRRRRSLTPDEE 537
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 86 (35.3 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG+V DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R L+ G+ ++VE
Sbjct: 66 ARELNGKALD--GKPIKVE 82
Score = 80 (33.2 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 38/137 (27%), Positives = 50/137 (36%)
Query: 281 GRVRSPSPYRRDRGS-PDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSS 339
G+ P + ++ + P + S R P R+ RGP R RGS G
Sbjct: 71 GKALDGKPIKVEQATKPSFSTPSRRGPPTSPRS-----RGPPRGL----RGSRGGGSSRG 121
Query: 340 PSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPE 399
P ++G P P +G GP P +R PS G P + MP
Sbjct: 122 QMPLKRGPP-PRSG-GP---PPKRSAPSGPLRSSEMGGRAPLSRERDGYGAPPRRDPMPS 176
Query: 400 PRD---SP---GYDGAD 410
RD SP GY G D
Sbjct: 177 RRDVYMSPRDDGYSGKD 193
Score = 75 (31.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 46/144 (31%), Positives = 55/144 (38%)
Query: 279 DYGRVRSPSPYR---RDRGSPDYGRNSSRSPYKKERAAI--GHGRGPSRSPY--RRDRGS 331
DYG R Y RD DYG +SSR Y + G+G SR Y + GS
Sbjct: 202 DYGSSRDSRDYGPPPRDYSYRDYGHSSSRDDYGSRGYSDRDGYGGRDSRD-YSDHQSGGS 260
Query: 332 PEN---GHGSSPS-PYRKGKPSPNNGRGPSR-SPYERERPSPENXXXXXXXXXXXXXXXX 386
+ G+G+S S P +G P P+ G G SR Y R
Sbjct: 261 YRDSYEGYGNSRSAPPARGPP-PSYG-GSSRYDDYSSTRDGYGGRDSYSSSRNDIYSSGR 318
Query: 387 DN-GRVPS--PNSM----PEPRDS 403
D GR P SM P PRDS
Sbjct: 319 DRVGRQERGLPPSMDRGYPPPRDS 342
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 87 (35.7 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG++ DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R ++ G+ ++VE
Sbjct: 66 ARDMNGKSLD--GKAIKVE 82
Score = 81 (33.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200
RP K LF+ + T + LE F YG+I+ V + R FAFV +E DA
Sbjct: 6 RPGK-LFIGGLNT-ETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 201 RALDATNMSKLTDRVISVEYAVRDD-DDRRNG 231
A N L + I VE A + + R G
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRG 95
Score = 79 (32.9 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 38/141 (26%), Positives = 47/141 (33%)
Query: 284 RSPSPYRRDRGSPDYGRNSSRSPYKK----ERAAIGHGRG----PSRSPYRRDRGSPENG 335
R +P RD DYG +SSR Y +R G R PS YR S N
Sbjct: 232 RDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRERDYSDHPSGGSYRDSYESYGNS 291
Query: 336 HGSSPS---PYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
+ P+ P G S + SR Y R S + + G P
Sbjct: 292 RSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYTSSRSDLYSSGRDRVGRQERGLPP 351
Query: 393 S-PNSMPEPRDSPGYDGADSP 412
S P PRDS +P
Sbjct: 352 SMERGYPPPRDSYSSSSRGAP 372
Score = 79 (32.9 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 48/154 (31%), Positives = 57/154 (37%)
Query: 293 RGSPDYGRNSSRSP---YKKERAAIGHGRGP-SRSPYRRDRGSPENGHGSS---PSPYRK 345
RG P R SR P + R G RGP SR + D G N SS P P ++
Sbjct: 94 RGLPPPPR--SRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFTLSSSRGPLPVKR 151
Query: 346 GKPSPNNGRGPSRSPYERERPS-PENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRD-- 402
G P P +G GP P +R PS P G P +P RD
Sbjct: 152 GPP-PRSG-GP---PPKRSAPSGPVRSSSGMGGRAPVSRGRDGYGGPPRREPLPSRRDVY 206
Query: 403 -SP---GYDGADS------PINERYRSRSPPAED 426
SP GY DS P + R +PP D
Sbjct: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 98 (39.6 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-------GFAFIYMDDERDAEDAIRG 108
R +F GN Y+ R DL+ LFR+ G V R D++ G + M ++A AI+
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 109 LDRTEFGRKGRRLRV 123
L T+F GR L V
Sbjct: 239 LHNTDF--MGRTLEV 251
Score = 69 (29.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRAL 203
S ++V N P+ T R+L F G +I RI + F VQ+E + DA ++
Sbjct: 309 SDCIYVGNL-PWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSI 367
Query: 204 DATNMSKLTDRVISVEYA 221
+ N + R + + YA
Sbjct: 368 EKLNGYRYGGRPLQLSYA 385
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 104 (41.7 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 98 (39.6 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 201
P+ +LFV N TR+ DL R F YG I+ V R R FA+VQ+E DA
Sbjct: 8 PNTSLFVRNVAD-DTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL + + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
Score = 43 (20.2 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSS 303
DY RS SP R G P R+ S
Sbjct: 135 DYNYRRSYSPRNRPTGRPRRSRSHS 159
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 101 (40.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 210
+K LFV TR +++ HF ++ VR+ +AFV +E ++DA +AL+ N ++
Sbjct: 8 TKQLFVRPLRNDVTR-EEVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLNDAE 66
Query: 211 LTDRVISVEYAVRDDDDRR 229
+ +E+A +D R
Sbjct: 67 FNGEKLQIEFAKERREDTR 85
Score = 59 (25.8 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 27/87 (31%), Positives = 34/87 (39%)
Query: 291 RDRGSPDYGRNSSRSPYKK-ERAAI--GHG---RGPSRSPYRR-----DRGSPENGHGS- 338
R RG D G R Y + +R G G RG R +R DRG G G
Sbjct: 182 RGRGGFDRGFRGGRGGYDRYDRGGFRGGRGGFDRGFDRGGFRGGRGGYDRGGFRGGRGGF 241
Query: 339 SPSPYRKGKPSPNNGRGP-SRSPYERE 364
+R G+ GRG R Y+R+
Sbjct: 242 DRGGFRGGRGGFRGGRGGYDRGGYDRD 268
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 101 (40.6 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSK 210
+K LFV TR +++ HF ++ VR+ +AFV +E ++DA +AL+ N ++
Sbjct: 8 TKQLFVRPLRNDVTR-EEVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLNDAE 66
Query: 211 LTDRVISVEYAVRDDDDRR 229
+ +E+A +D R
Sbjct: 67 FNGEKLQIEFAKERREDTR 85
Score = 59 (25.8 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 27/87 (31%), Positives = 34/87 (39%)
Query: 291 RDRGSPDYGRNSSRSPYKK-ERAAI--GHG---RGPSRSPYRR-----DRGSPENGHGS- 338
R RG D G R Y + +R G G RG R +R DRG G G
Sbjct: 182 RGRGGFDRGFRGGRGGYDRYDRGGFRGGRGGFDRGFDRGGFRGGRGGYDRGGFRGGRGGF 241
Query: 339 SPSPYRKGKPSPNNGRGP-SRSPYERE 364
+R G+ GRG R Y+R+
Sbjct: 242 DRGGFRGGRGGFRGGRGGYDRGGYDRD 268
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 99 (39.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 154 LFV--INFDPYHTRTRDLERHFEPYGKI---ISVRIR-----RNFAFVQYEVQEDATRAL 203
LF+ +NFD T LE+ F YG+I + V+ R R F FV +E +DA A+
Sbjct: 7 LFIGGLNFD---TNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM 63
Query: 204 DATNMSKLTDRVISVEYAVRDDDDRRNGH 232
A N + R I V+ A + DRR G+
Sbjct: 64 MAMNGKAVDGRQIRVDQAGKSSGDRRGGY 92
Score = 93 (37.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 109
+F G +D + LE++F +YG++ DR +S GF F+ ++ DA+DA+ +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 110 DRTEFGRKGRRLRVE 124
+ GR++RV+
Sbjct: 67 NGKAVD--GRQIRVD 79
Score = 48 (22.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 311 RAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERER 365
R GRG R R RG + G+GSS R G ++G SR Y R
Sbjct: 93 RGGSSGGRGFFRGG--RGRGGGDRGYGSSRFDNRSGGYGGSSG---SRDYYSSGR 142
Score = 43 (20.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 18/54 (33%), Positives = 20/54 (37%)
Query: 291 RDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
R RG D G SSR + G G SR Y R G + S YR
Sbjct: 107 RGRGGGDRGYGSSR--FDNRSGGYGGSSG-SRDYYSSGRSQGSYGDRAGGS-YR 156
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 101 (40.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + D + + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
D+ GR++ +++ +
Sbjct: 72 DKKWIC--GRQIEIQFAQ 87
Score = 97 (39.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 201
P+ +LFV N R+ DL R F YG I+ V R R FA+VQ+E DA
Sbjct: 8 PNSSLFVRNIAD-DIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRDDDDRRNGH 232
AL + + R I +++A DR+ H
Sbjct: 67 ALHNLDKKWICGRQIEIQFA---QGDRKTPH 94
Score = 57 (25.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 42/143 (29%), Positives = 57/143 (39%)
Query: 281 GRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRS-PYRRDRG-SPENGHGS 338
G ++P + GS YG SSR Y +R + R SRS RR R S E +G
Sbjct: 88 GDRKTPHQMKAKEGSSTYG--SSR--YDDDRY---NRRSRSRSYERRRSRSRSIEQNYGR 140
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMP 398
S SP R G+ + R SRS + R + N N R S
Sbjct: 141 SNSP-RGGRGAERLRRSRSRSDHGRF--NRRNRSRSRSGS---------NSR---SRSKS 185
Query: 399 EPRDSPGYDGADSPINERYRSRS 421
EP+ + G+ S N R S++
Sbjct: 186 EPKKTVREQGSGSRSNSRGHSKA 208
Score = 56 (24.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/86 (32%), Positives = 33/86 (38%)
Query: 280 YGRVR-SPSPYRRDRGSPDYGRNSSRSP-----YKKERAAIGHGRGPSRSPYRRDRGSPE 333
YG R Y R S Y R SRS Y + + G GRG R RR R +
Sbjct: 105 YGSSRYDDDRYNRRSRSRSYERRRSRSRSIEQNYGRSNSPRG-GRGAER--LRRSRSRSD 161
Query: 334 NGHGSSPSPYRKGKPSPNNGRGPSRS 359
HG R S +N R S+S
Sbjct: 162 --HGRFNRRNRSRSRSGSNSRSRSKS 185
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 95 (38.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA+ + D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 64 (27.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKG--KPSPNN 352
S R+ S+S KKE A R S + R + H S S Y K K P
Sbjct: 175 SKSNSRSRSKSQPKKEMKAKSRSRSASHTKSRGTSKTDSKTHYKSSSRYEKESRKKEPAR 234
Query: 353 GRGPSRSPYERER 365
+ SRS + R R
Sbjct: 235 SKSQSRS-HSRSR 246
>WB|WBGene00004388 [details] [associations]
symbol:rnp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0007281 GO:GO:0040020 EMBL:FO080195
GeneTree:ENSGT00700000104336 eggNOG:NOG331533 KO:K14325
RefSeq:NP_497276.2 ProteinModelPortal:Q21155 SMR:Q21155
IntAct:Q21155 STRING:Q21155 PaxDb:Q21155 EnsemblMetazoa:K02F3.11.1
EnsemblMetazoa:K02F3.11.2 GeneID:175244 KEGG:cel:CELE_K02F3.11
UCSC:K02F3.11.1 CTD:175244 WormBase:K02F3.11 HOGENOM:HOG000015855
InParanoid:Q21155 OMA:MIDMPVN NextBio:887378 Uniprot:Q21155
Length = 289
Score = 118 (46.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 39/95 (41%), Positives = 44/95 (46%)
Query: 282 RVRSPSPYRRDR-GSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP 340
R RS S GS G +SS S + ++ GR SRSP RRD P G G S
Sbjct: 10 RARSSSSSSSSSSGSSSSGSSSSGS---RSSSSSSSGRSRSRSPRRRDTRPPARG-GRSR 65
Query: 341 SPYRKGKPSPNNGRG-------PSRSPYERERPSP 368
SP R+G P P R PS SP R RPSP
Sbjct: 66 SPIRRGSP-PRGARADRDRPMRPSPSPPRRRRPSP 99
Score = 112 (44.5 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 32/81 (39%), Positives = 39/81 (48%)
Query: 285 SPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYR 344
S S R S GR+ SRSP +++ G G SRSP RR GSP G +
Sbjct: 29 SSSSGSRSSSSSSSGRSRSRSPRRRDTRPPARG-GRSRSPIRR--GSPPRGARADRDRPM 85
Query: 345 KGKPSPNNGRGPSRSPYERER 365
+ PSP R PS SP R+R
Sbjct: 86 RPSPSPPRRRRPSPSPPRRDR 106
Score = 79 (32.9 bits), Expect = 0.00092, Sum P(2) = 0.00091
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 322 RSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP 360
RSP RDR SP G SP P+R+ P G G + P
Sbjct: 228 RSPPPRDRMSPMRRGGRSPPPHRRRSPMGGRGSGANNMP 266
Score = 74 (31.1 bits), Expect = 0.00092, Sum P(2) = 0.00091
Identities = 24/97 (24%), Positives = 44/97 (45%)
Query: 39 RRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS--------- 89
RR+ + S AA + + + N + ++ LE +F YG + VD+
Sbjct: 116 RRASPRRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHR 175
Query: 90 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126
G+ ++ D+ DAE +I+ +D + G + VE T
Sbjct: 176 GYGYVEYDNLEDAEKSIKHMDGGQID--GMAVHVEMT 210
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 389 GRVPSPNSMPEPRDSPGYDGADSPIN--ERYR----SRSP 422
GR P P+ P G + P+ R+R SRSP
Sbjct: 243 GRSPPPHRRRSPMGGRGSGANNMPLGGPNRFRRASRSRSP 282
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDAIRGL 109
++ GN Y +DLER F YG V DR +S GF F+ M +++A+ AI GL
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 110 DRTEFGRKGRRLRV 123
+ E GR L V
Sbjct: 65 NGKEMD--GRNLMV 76
>UNIPROTKB|J9NZF4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03008509
Ensembl:ENSCAFT00000047953 OMA:PRRFAYV Uniprot:J9NZF4
Length = 318
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/83 (33%), Positives = 38/83 (45%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATR 201
P L ++ P+ R DL R F YG I+ V I R FA+VQ+E DA
Sbjct: 65 PPGLLNLLPAQPFF-RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 123
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL N + R I +++A D
Sbjct: 124 ALYNLNRKWVCGRQIEIQFAQGD 146
Score = 83 (34.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 68 RQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGLDRTEFGRKGR 119
R DL R F RYG + V D + GFA++ +D RDAEDA+ L+R GR
Sbjct: 79 RPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVC--GR 136
Query: 120 RLRVEWTK 127
++ +++ +
Sbjct: 137 QIEIQFAQ 144
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 34/134 (25%), Positives = 51/134 (38%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGS 338
D+ R RSPS R S +GRN RS KE H R R + P +
Sbjct: 165 DHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESR---HRRFSYSQSKSRSKSLPRRSTSA 221
Query: 339 SPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMP 398
S + + S + GR S+S +R + ++ +GR S +
Sbjct: 222 RQSRTPR-RNSGSRGRSRSKSLPKRSKSIGKSQSSSPQKQTSSGTKSRSHGR-HSDSIAR 279
Query: 399 EPRDSP-GYDGADS 411
P SP GY +++
Sbjct: 280 SPCKSPKGYTNSEA 293
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 59 FCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDAEDAIRGLDRTEFG 115
+ GN + +LER F YG + V + GFAF++ +D RDAEDA+ GL
Sbjct: 9 YVGNLGTGVGKGELERAFSYYGPLRTVWIARNPPGFAFVF-EDPRDAEDAVGGLGGKVIC 67
Query: 116 RKGRRLRVE 124
G R+RVE
Sbjct: 68 --GSRVRVE 74
Score = 60 (26.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 26/74 (35%), Positives = 31/74 (41%)
Query: 280 YGRVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIG---HGRGPSRSPYRRDRG-SPEN 334
Y RS S RR R SP R++S K + IG H RS + R SP
Sbjct: 136 YSYSRSRSCGRRSRSTSPLCSRSTSLRR-SKSVSIIGSRSHKVERPRSCQSKSRSPSPRR 194
Query: 335 GHGSSPSPYRKGKP 348
H S SP+R P
Sbjct: 195 SHSPSGSPHRSASP 208
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 79 (32.9 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 27/101 (26%), Positives = 38/101 (37%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVD--RV--DMKSG----FAFIYMDDERDAEDAIRGL 109
IF G+ + L + F +G V RV DMK+G + F+ D DAE A+ +
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 110 DRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRP 150
D G R +R W + T T P
Sbjct: 238 DGEWLG--SRAIRCNWANQKGQPSIAQQQAMSAVGMTPTTP 276
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSK 210
T +V N PY T D+ F+ +G ++ R + R FAF++ + E+A +A+ N
Sbjct: 303 TCYVGNLTPY-TTANDVVPLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYN 361
Query: 211 LTDRVISVEY 220
+ R + +
Sbjct: 362 VNGRPLKCSW 371
Score = 48 (22.0 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 297 DYGRNSSRSP--------YKKERAAIGHGRGPS--RSPYRRDRGSPENGHGSSPSPYR 344
++G NS++SP + +A G+GRG + + +G P+N + + S Y+
Sbjct: 421 NFGPNSAQSPAGFQQPMPFSNPPSAGGYGRGQQAPNAQWSSPQGQPQNFNNNGFSGYQ 478
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 53 AMMRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110
+M +F GN ++SD+E +F +YGK+ + GFAF+ +ER+A A+ G D
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
Score = 94 (38.1 bits), Expect = 0.00053, P = 0.00053
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ N + + D+E F YGKI+ + + FAFVQY + +A A+ + +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 214 RVISVEYAVRDDDDR 228
+V+ + A +R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 53 AMMRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110
+M +F GN ++SD+E +F +YGK+ + GFAF+ +ER+A A+ G D
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
Score = 94 (38.1 bits), Expect = 0.00053, P = 0.00053
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ N + + D+E F YGKI+ + + FAFVQY + +A A+ + +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 214 RVISVEYAVRDDDDR 228
+V+ + A +R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 53 AMMRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110
+M +F GN ++SD+E +F +YGK+ + GFAF+ +ER+A A+ G D
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGED 71
Score = 94 (38.1 bits), Expect = 0.00053, P = 0.00053
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTD 213
+F+ N + + D+E F YGKI+ + + FAFVQY + +A A+ + +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAG 77
Query: 214 RVISVEYAVRDDDDR 228
+V+ + A +R
Sbjct: 78 QVLDINLAAEPKVNR 92
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQEDATR 201
P +L+V + P T E+ F P G I+S+R+ RR+ +A+V ++ DA R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEK-FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 202 ALDATNMSKLTDRVISVEYAVRDDDDRRNG 231
ALD N + + + + ++ RD R++G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQEDATR 201
P +L+V + P T E+ F P G I+S+R+ RR+ +A+V ++ DA R
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEK-FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAER 67
Query: 202 ALDATNMSKLTDRVISVEYAVRDDDDRRNG 231
ALD N + + + + ++ RD R++G
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
>UNIPROTKB|F1MI03 [details] [associations]
symbol:SRRM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR024945 SMART:SM01104 GO:GO:0016607
GO:GO:0015030 GO:GO:0071013 InterPro:IPR013170 Pfam:PF08312
OMA:HTPSRRM GeneTree:ENSGT00650000093061 EMBL:DAAA02057317
EMBL:DAAA02057318 IPI:IPI00688395 PRIDE:F1MI03
Ensembl:ENSBTAT00000037527 ArrayExpress:F1MI03 Uniprot:F1MI03
Length = 2724
Score = 130 (50.8 bits), Expect = 0.00016, P = 0.00016
Identities = 49/151 (32%), Positives = 65/151 (43%)
Query: 281 GRVRSPSPYRRDRG---SPDY-GRNSSRSP-YKKERAAIGHGRGPSRSPYRRDRG-SPEN 334
GR RSP+ +R R +P G + SRSP +++ R+A GR SRSP RR R SP+
Sbjct: 478 GRSRSPTTNKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGR--SRSPQRRGRSRSPQR 535
Query: 335 -GHGSSPSPYRKGKP-SPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVP 392
G S + R+G+ S GR SRSP R R R P
Sbjct: 536 PGWSRSRNAQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTP 595
Query: 393 SPN-SMPEPRDSPGYDGADSPINERYRSRSP 422
+ S G + +P R R+RSP
Sbjct: 596 ARRRSRSRTPARRGRSRSRTPARRRSRTRSP 626
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 104 (41.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSS 303
DY RS SP R G P R+ S
Sbjct: 135 DYNYRRSYSPRNRPTGRPRRSRSHS 159
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 104 (41.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N D R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 279 DYGRVRSPSPYRRDRGSPDYGRNSS 303
DY RS SP R G P R+ S
Sbjct: 135 DYNYRRSYSPRNRPTGRPRRSRSHS 159
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 50/212 (23%), Positives = 83/212 (39%)
Query: 31 RRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDMKS 89
+++YV F R + S A ++ N DL+ F YGK+ V MK
Sbjct: 192 KQVYVGPFLRRQERDSTA--NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 249
Query: 90 G------FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXX 143
G F F+ ++ DA A+ L+ +F K + K E
Sbjct: 250 GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLK 309
Query: 144 XXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN-------FAFVQYEVQ 196
+ S L+V N DP + + L+ F P+G + S ++ R+ FV +
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEK-LKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 368
Query: 197 EDATRALDATNMSKLTDRVISVEYAVRDDDDR 228
E+AT A+ + + + + V A R +D R
Sbjct: 369 EEATEAMSQLSGKMIESKPLYVAIAQRKEDRR 400
>UNIPROTKB|E1BRL9 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
ArrayExpress:E1BRL9 Uniprot:E1BRL9
Length = 226
Score = 82 (33.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/81 (33%), Positives = 36/81 (44%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKP 348
Y R R S GR S + Y++ R+ + R S SP R GS + S S R
Sbjct: 144 YSRSR-SRSRGRRSRSASYRRSRS-VSPRRSRSVSPRRSRSGSLKRSRSRSRSRSRSRSV 201
Query: 349 S-PNNGRGPSRSPYERERPSP 368
+ P + R SRSP + SP
Sbjct: 202 TWPRSSRSKSRSPSPKRSRSP 222
Score = 81 (33.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/80 (40%), Positives = 36/80 (45%)
Query: 282 RVRSPSPYRRDRG-SPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSP 340
R RS S YRR R SP R+ S SP + ++ R SRS R R SS
Sbjct: 155 RSRSAS-YRRSRSVSPR--RSRSVSPRRSRSGSLKRSRSRSRS---RSRSRSVTWPRSSR 208
Query: 341 SPYRKGKPSPNNGRGPSRSP 360
S R PSP R PS SP
Sbjct: 209 SKSRS--PSPKRSRSPSGSP 226
Score = 77 (32.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 27/74 (36%), Positives = 32/74 (43%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGP-SRSP-YRRDRG-SPENGHGSSPSPYRK 345
Y R R S R+ SRS ++ + RG SRS YRR R SP SP R
Sbjct: 123 YSRRRRSRSRSRSRSRSRGRRYSRSRSRSRGRRSRSASYRRSRSVSPRRSRSVSPRRSRS 182
Query: 346 GKPSPNNGRGPSRS 359
G + R SRS
Sbjct: 183 GSLKRSRSRSRSRS 196
Score = 74 (31.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMKS---GFAFIYMDDERDA 102
++ GN A + +LER F YG + V + GFAF+ +D RDA
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA 60
Score = 67 (28.6 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 168 DLERHFEPYGKIISVRIRRN---FAFVQYEVQEDA 199
+LER F YG + +V I RN FAFV++E DA
Sbjct: 26 ELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA 60
>TAIR|locus:2076121 [details] [associations]
symbol:AT3G23900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010638 "positive
regulation of organelle organization" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR001298 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
SMART:SM00557 EMBL:CP002686 Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR014756 SUPFAM:SSF81296 InterPro:IPR017868
Pfam:PF00630 PROSITE:PS50194 IPI:IPI00521323 RefSeq:NP_001189958.1
RefSeq:NP_189032.2 UniGene:At.37625 UniGene:At.73245
ProteinModelPortal:F4J5A7 SMR:F4J5A7 PRIDE:F4J5A7
EnsemblPlants:AT3G23900.1 EnsemblPlants:AT3G23900.3 GeneID:821973
KEGG:ath:AT3G23900 OMA:HIAYVEY Uniprot:F4J5A7
Length = 987
Score = 93 (37.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 43/153 (28%), Positives = 62/153 (40%)
Query: 284 RSPSPYRRDRGSPDYG-------RNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENG- 335
+SP YRR R SP Y + SRSP + +R + GR R YR R E+
Sbjct: 522 KSPISYRRRRRSPTYSPPFRRPRSHRSRSPLRYQRRSTYEGR---RRSYRDSRDISESRR 578
Query: 336 HGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXXXXXXXXXXXXXXXXDNGRVPS-- 393
+G S + S ++ R S SP +R + E+ + R S
Sbjct: 579 YGRSDEHH-----SSSSRRSRSVSPKKR-KSGQEDSELSRLRRDSSSRGEKKSSRAGSRS 632
Query: 394 PNSMPEPRDSPGYDGADSPINERYRSRSPPAED 426
P E + +P D ++ + R RSRS ED
Sbjct: 633 PRRRKEVKSTPR-DDEENKVKRRTRSRSRSVED 664
Score = 79 (32.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 152 KTLFVINFDPYHTRTRDLERHFEPYGKII--SVRIRRNFAFVQYEVQEDATRALDATNMS 209
K L V N P T T L + F G ++ S+ ++ A+++Y E+AT AL A N +
Sbjct: 351 KFLQVSNLSPSLT-TEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAAL-ALNNT 408
Query: 210 KLTDRVISVEYA 221
++ R ++VE A
Sbjct: 409 EVFGRALNVEIA 420
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 42/116 (36%), Positives = 55/116 (47%)
Query: 23 PVQK--KYLPRRLYVLGFRRSHS-QLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRY 79
PV K KY+P L G RR S Q + A + A +R N D R++DL+ LFR +
Sbjct: 194 PVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVT---NLSEDTRETDLQELFRPF 250
Query: 80 GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
G + R+ + GFAFI DA AI G+ + FG L VEW K
Sbjct: 251 GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVEWAK 304
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 118 (46.6 bits), Expect = 0.00019, P = 0.00019
Identities = 42/116 (36%), Positives = 55/116 (47%)
Query: 23 PVQK--KYLPRRLYVLGFRRSHS-QLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRY 79
PV K KY+P L G RR S Q + A + A +R N D R++DL+ LFR +
Sbjct: 194 PVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVT---NLSEDTRETDLQELFRPF 250
Query: 80 GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
G + R+ + GFAFI DA AI G+ + FG L VEW K
Sbjct: 251 GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVEWAK 304
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 42/116 (36%), Positives = 55/116 (47%)
Query: 23 PVQK--KYLPRRLYVLGFRRSHS-QLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRY 79
PV K KY+P L G RR S Q + A + A +R N D R++DL+ LFR +
Sbjct: 196 PVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVT---NLSEDTRETDLQELFRPF 252
Query: 80 GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
G + R+ + GFAFI DA AI G+ + FG L VEW K
Sbjct: 253 GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVEWAK 306
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 27/74 (36%), Positives = 36/74 (48%)
Query: 62 NFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTE 113
N D R++DL+ LFR +G + R+ + GFAFI DA AI G+ +
Sbjct: 43 NRREDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV--SG 100
Query: 114 FGRKGRRLRVEWTK 127
FG L VEW K
Sbjct: 101 FGYDHLILNVEWAK 114
>POMBASE|SPBC428.12c [details] [associations]
symbol:SPBC428.12c "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
Length = 116
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-------NFAFVQYEVQEDATR 201
R T+ V N P T + L F P+G+IISV + R ++AFV+++ EDA
Sbjct: 3 RRKATVHVGNLAPSVTESL-LYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKE 61
Query: 202 ALDATNMSKLTDRVISVEYA 221
A++ N S L DR I V A
Sbjct: 62 AMENMNYSILCDRCIRVSPA 81
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 120 (47.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 48/179 (26%), Positives = 71/179 (39%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGL 109
+F GN D + L+++F ++G +DR+ + G+AFI + A A L
Sbjct: 402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461
Query: 110 DRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDL 169
F R R LRV+W ++ + SKT+FV L
Sbjct: 462 GSIVFNR--RTLRVDWAEN--------------CNTMESMHSKTIFVDRLPRSFADVPIL 505
Query: 170 ERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221
+ F P+GKI + R FAF+ Y EDA +A N L I V +A
Sbjct: 506 RKVFSPFGKIKDCNVVPNYYGQPRGFAFIDYNNVEDAEKAQRMMNEKDLKGYKIRVNFA 564
Score = 49 (22.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 26/86 (30%), Positives = 31/86 (36%)
Query: 283 VRSPSPYR-RDRGSPDYG---RNSSRSPYKKERAAIGHGRGPSRSP------YRRDRGSP 332
V S SP+R R RG G NS GRG P Y+ RG
Sbjct: 588 VPSSSPFRGRGRGRGSMGVPPPNSQHFGIGSVGGGFRGGRGVGGYPGDHSGIYQGGRGGR 647
Query: 333 ENG--HGSSPSPYRKGKPSPNNGRGP 356
G +GS P +G P + GP
Sbjct: 648 GVGGVNGSGPIAMERGGPMHHQPYGP 673
Score = 46 (21.3 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 289 YRRDRGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKP 348
+R RG Y + S Y+ R G G P +RG P + P P+ G
Sbjct: 623 FRGGRGVGGYPGDHS-GIYQGGRGGRGVGGVNGSGPIAMERGGPMHHQPYGPPPHH-GPM 680
Query: 349 SPNNGRG 355
+G G
Sbjct: 681 LHQSGYG 687
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 86 (35.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 56 RP--IFCGNFEYDARQSDLERLFRRYGKV-------DRVDMKS-GFAFIYMDDERDAEDA 105
RP +F G + + LE +F +YG+V DR KS GFAF+ + DA+DA
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 106 IRGLDRTEFGRKGRRLRVE 124
R L+ G+ ++VE
Sbjct: 66 ARELNGKALD--GKPIKVE 82
Score = 75 (31.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 33/104 (31%), Positives = 39/104 (37%)
Query: 318 RGP-----SRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSPYERERPSPENXX 372
RGP SR P R RGS G P ++G P P +G GP P +R PS
Sbjct: 95 RGPPPPPRSRGPPRGLRGSRGGGSSRGQMPLKRGPP-PRSG-GP---PPKRSAPSGPVRS 149
Query: 373 XXXXXXXXXXXXXXDNGRVPSPNSMPEPRD---SP---GYDGAD 410
G P + +P RD SP GY G D
Sbjct: 150 SGMGGRAPLSRERDGYGAPPRRDPIPSRRDVYMSPRDDGYSGKD 193
Score = 73 (30.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/73 (32%), Positives = 31/73 (42%)
Query: 293 RGSPDYGRNSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNN 352
RG P R SR P + R + G G + P +R G P G P P ++
Sbjct: 95 RGPPPPPR--SRGPPRGLRGSRGGGSSRGQMPLKR--GPPPRSGGPPPKRSAPSGPVRSS 150
Query: 353 GRGPSRSPYERER 365
G G R+P RER
Sbjct: 151 GMG-GRAPLSRER 162
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 42/117 (35%), Positives = 55/117 (47%)
Query: 23 PVQKK---YLPRRLYVLGFRRSHS-QLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRR 78
PVQ K Y+P L G RR S Q + A + A +R N D R++DL+ LFR
Sbjct: 178 PVQNKTGKYVPPSLRDGGTRRGESMQPNRRADDNATIRVT---NLSEDTRETDLQELFRP 234
Query: 79 YGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
+G + R+ + GFAFI DA AI G+ + FG L VEW K
Sbjct: 235 FGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAIAGV--SGFGYDHLILNVEWAK 289
>UNIPROTKB|I3LMT3 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 OMA:SLTSYGA
Ensembl:ENSSSCT00000026592 Uniprot:I3LMT3
Length = 520
Score = 99 (39.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 71 DLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124
+L LF R G+V D S +AF++M+ E DA+ AI L+ E KG+R+ VE
Sbjct: 8 ELRSLFERRGRVIECDFLSDYAFVHMEKEADAKAAIAQLNGKEV--KGKRINVE 59
Score = 64 (27.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/84 (29%), Positives = 36/84 (42%)
Query: 295 SPDYGRNSSRSPYKKERAAIGHGRGPSRS---PYRRDRGSP------ENGHGSSPSPYRK 345
S YG S+ + AA +G PS + PYR + H + + YR
Sbjct: 371 SGSYGAQSAAAATGSYGAAAAYGAQPSATLAAPYRTQSSASLAASYAAQQHPQAAASYR- 429
Query: 346 GKP-SPNNGRGPSRSPYERERPSP 368
G+P + +G G + YER R SP
Sbjct: 430 GQPGNAYDGAGQPSAXYERTRLSP 453
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 92 (37.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 31/84 (36%), Positives = 40/84 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQED 198
N P+ L V Y T RDL F YG I V I RR+ FAFV +E ED
Sbjct: 113 NPDPNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVED 171
Query: 199 ATRALDATNMSKLTDRVISVEYAV 222
A A + N +L R I V++++
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSI 195
Score = 64 (27.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 30/95 (31%), Positives = 37/95 (38%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRD-RGSPENGHGSS 339
R +P+P G P YG + R Y + G+ RG R Y R RG G G
Sbjct: 198 RPHTPTPGIY-MGRPTYGSSRRRDYYDR-----GYDRGYDDRDYYSRSYRGGGGGGGGGW 251
Query: 340 PSP------YRKGKPSPNNGRGPSRSPYERERPSP 368
+ YR+ PSP RG RS SP
Sbjct: 252 RAVQDRDQFYRRRSPSPYYSRGGYRSRSRSRSYSP 286
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 89 (36.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQED 198
N P+ L V Y T RDL F YG I V I RR+ FAFV +E +D
Sbjct: 113 NPDPNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 199 ATRALDATNMSKLTDRVISVEYAV 222
A A + N +L R I V++++
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSI 195
Score = 67 (28.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/94 (31%), Positives = 37/94 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRD-RGSPENGHGSS 339
R +P+P G P YG + R Y + G+ RG R Y R RG G G
Sbjct: 198 RPHTPTPGIY-MGRPTYGSSRRRDYYDR-----GYDRGYDDRDYYSRSYRGGGGGGGGWR 251
Query: 340 PSP-----YRKGKPSPNNGRGPSRSPYERERPSP 368
+ YR+ PSP RG RS SP
Sbjct: 252 AAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSP 285
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 89 (36.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQED 198
N P+ L V Y T RDL F YG I V I RR+ FAFV +E +D
Sbjct: 113 NPDPNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 199 ATRALDATNMSKLTDRVISVEYAV 222
A A + N +L R I V++++
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSI 195
Score = 67 (28.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/94 (31%), Positives = 37/94 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRD-RGSPENGHGSS 339
R +P+P G P YG + R Y + G+ RG R Y R RG G G
Sbjct: 198 RPHTPTPGIY-MGRPTYGSSRRRDYYDR-----GYDRGYDDRDYYSRSYRGGGGGGGGWR 251
Query: 340 PSP-----YRKGKPSPNNGRGPSRSPYERERPSP 368
+ YR+ PSP RG RS SP
Sbjct: 252 AAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSP 285
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 89 (36.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQED 198
N P+ L V Y T RDL F YG I V I RR+ FAFV +E +D
Sbjct: 113 NPDPNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 199 ATRALDATNMSKLTDRVISVEYAV 222
A A + N +L R I V++++
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSI 195
Score = 67 (28.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/94 (31%), Positives = 37/94 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRD-RGSPENGHGSS 339
R +P+P G P YG + R Y + G+ RG R Y R RG G G
Sbjct: 198 RPHTPTPGIY-MGRPTYGSSRRRDYYDR-----GYDRGYDDRDYYSRSYRGGGGGGGGWR 251
Query: 340 PSP-----YRKGKPSPNNGRGPSRSPYERERPSP 368
+ YR+ PSP RG RS SP
Sbjct: 252 AAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSP 285
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 89 (36.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQED 198
N P+ L V Y T RDL F YG I V I RR+ FAFV +E +D
Sbjct: 113 NPDPNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 199 ATRALDATNMSKLTDRVISVEYAV 222
A A + N +L R I V++++
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSI 195
Score = 67 (28.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/94 (31%), Positives = 37/94 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRD-RGSPENGHGSS 339
R +P+P G P YG + R Y + G+ RG R Y R RG G G
Sbjct: 198 RPHTPTPGIY-MGRPTYGSSRRRDYYDR-----GYDRGYDDRDYYSRSYRGGGGGGGGWR 251
Query: 340 PSP-----YRKGKPSPNNGRGPSRSPYERERPSP 368
+ YR+ PSP RG RS SP
Sbjct: 252 AAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSP 285
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 89 (36.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------RRN--FAFVQYEVQED 198
N P+ L V Y T RDL F YG I V I RR+ FAFV +E +D
Sbjct: 113 NPDPNCCLGVFGLSLYTTE-RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 199 ATRALDATNMSKLTDRVISVEYAV 222
A A + N +L R I V++++
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSI 195
Score = 67 (28.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/94 (31%), Positives = 37/94 (39%)
Query: 282 RVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRD-RGSPENGHGSS 339
R +P+P G P YG + R Y + G+ RG R Y R RG G G
Sbjct: 198 RPHTPTPGIY-MGRPTYGSSRRRDYYDR-----GYDRGYDDRDYYSRSYRGGGGGGGGWR 251
Query: 340 PSP-----YRKGKPSPNNGRGPSRSPYERERPSP 368
+ YR+ PSP RG RS SP
Sbjct: 252 AAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSP 285
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 99 (39.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RIRRNFAFVQYEVQEDATR 201
P+ +LFV N +TR+ DL R F YG I+ V R R FA+VQ+E DA
Sbjct: 8 PNTSLFVRNVAD-NTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAED 66
Query: 202 ALDATNMSKLTDRVISVEYAVRD 224
AL + + R I +++A D
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGD 89
Score = 98 (39.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVDRV----DMKS----GFAFIYMDDERDAEDAIRGL 109
+F N + R DL R F RYG + V D + GFA++ +D RDAEDA+ L
Sbjct: 12 LFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALHNL 71
Query: 110 DRTEFGRKGRRLRVEWTK 127
DR GR++ +++ +
Sbjct: 72 DRKWIC--GRQIEIQFAQ 87
Score = 54 (24.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 279 DYGRVRSPSPYR-RDRGSPDYGRNSSRSPYKKER 311
DY RS SP R G P R+ S + KKER
Sbjct: 135 DYNNRRSYSPRNSRPAGRPQRSRSHSDNDRKKER 168
>SGD|S000001016 [details] [associations]
symbol:RIM4 "Putative RNA-binding protein required for
sporulation gene expression" species:4932 "Saccharomyces
cerevisiae" [GO:0030435 "sporulation resulting in formation of a
cellular spore" evidence=IEA;IGI;IMP] [GO:0003723 "RNA binding"
evidence=IEA;ISS;IMP] [GO:0006279 "premeiotic DNA replication"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007126
"meiosis" evidence=IEA;IEP;IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001016 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0030435 GO:GO:0003723
EMBL:U11582 GO:GO:0007131 GO:GO:0006279 eggNOG:NOG322326
OrthoDB:EOG41ZJKV EMBL:AY558114 PIR:S46838 RefSeq:NP_011839.1
ProteinModelPortal:P38741 SMR:P38741 DIP:DIP-5673N IntAct:P38741
MINT:MINT-497617 STRING:P38741 PaxDb:P38741 EnsemblFungi:YHL024W
GeneID:856361 KEGG:sce:YHL024W CYGD:YHL024w HOGENOM:HOG000142374
OMA:FIKYETE NextBio:981820 Genevestigator:P38741 GermOnline:YHL024W
Uniprot:P38741
Length = 713
Score = 97 (39.2 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRN-FAFVQYEVQEDATRAL 203
T +++FV D TR +L R F +GKI + + N FAF++YE +E A AL
Sbjct: 342 TIDKRSIFVGQLDKETTR-EELNRRFSTHGKIQDINLIFKPTNIFAFIKYETEEAAAAAL 400
Query: 204 DATNMSKLTDRVISVEY 220
++ N + ++ + V+Y
Sbjct: 401 ESENHAIFLNKTMHVQY 417
Score = 57 (25.1 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 76 FRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127
F++YG + RV + +AF+ +++ DA+ A+ T GRRLR E K
Sbjct: 117 FKKYGDLARVKVLRDNANRPYAFVQYNNDHDAKHALIRAQGTLLN--GRRLRCEPAK 171
Score = 50 (22.7 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 24/75 (32%), Positives = 32/75 (42%)
Query: 301 NSSRSPYKKE---RAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGK--P-SPNNGR 354
NS++S YKK R++ G+ P + PY P H P Y G P P+ G
Sbjct: 592 NSNKSQYKKRYARRSSYGYNEVPPK-PYYFQ---PYYYH---PMQYHMGPMGPLHPSQGS 644
Query: 355 GPSRSPYERERP-SP 368
+ PY P SP
Sbjct: 645 AGNHHPYMMVYPMSP 659
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 127 (49.8 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 51/182 (28%), Positives = 83/182 (45%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKV--DRV--DMKS---GFAFIYMDDERDAEDAIRGLD 110
+F + Y+ DLE LF +YGKV +V D K G+ F+ +++ AI LD
Sbjct: 111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELD 170
Query: 111 RTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTR-PSKTLFVINFDPYHTRTRDL 169
++ K R+ N++ PS LF+ PY L
Sbjct: 171 GYQYQNKKLLCRLS----------------NLYTNLNSKYPSNNLFIKPL-PYDVTDDQL 213
Query: 170 ERHFEPYGKIISVRI------RRNFA-FVQYEVQEDATRALDATN---MSKLTDRVISVE 219
+ FEP+GKII ++ + FA FV++ + DA++A+DA N ++K + + V+
Sbjct: 214 RKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVK 273
Query: 220 YA 221
YA
Sbjct: 274 YA 275
Score = 38 (18.4 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 323 SPYRRDRGSPENGHGSSPSPYRKGKPSPNN 352
SP SP + SP PY K + NN
Sbjct: 569 SPPNTSIPSPTSD-SISPLPYNKNNNNNNN 597
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00045
Identities = 44/188 (23%), Positives = 77/188 (40%)
Query: 58 IFCGNFEYDARQSDLERLFRRYGKVD--RV--DM---KS-GFAFIYMDDERDAEDAIRGL 109
+F G+ + D++ F +GK+ RV DM KS G+ F+ ++ DAE+AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 110 DRTEFGRKGRRLRVEWTKHE----XXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTR 165
G GR++R W + N K V
Sbjct: 176 GGQWLG--GRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 166 TRDLERH-FEPYGKIISVRI--RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222
T L R F P+G+I+ +R+ + ++FV++ E A A+ + N + + V+ +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Query: 223 RDDDDRRN 230
D +N
Sbjct: 294 ESPDMTKN 301
WARNING: HSPs involving 26 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.136 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 426 349 0.00099 116 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 276
No. of states in DFA: 613 (65 KB)
Total size of DFA: 233 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.43u 0.11s 31.54t Elapsed: 00:00:02
Total cpu time: 31.48u 0.11s 31.59t Elapsed: 00:00:02
Start: Fri May 10 14:10:17 2013 End: Fri May 10 14:10:19 2013
WARNINGS ISSUED: 2