Query 014331
Match_columns 426
No_of_seqs 518 out of 3205
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:05:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 5.6E-30 1.2E-34 248.3 22.1 156 52-226 104-277 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-29 7.6E-34 247.0 24.8 214 10-225 44-350 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-28 3.6E-33 249.7 25.2 197 11-226 99-309 (578)
4 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.6E-28 1.2E-32 249.9 23.0 210 11-223 223-501 (509)
5 KOG0117 Heterogeneous nuclear 100.0 5.4E-28 1.2E-32 228.5 16.5 200 10-227 124-334 (506)
6 TIGR01645 half-pint poly-U bin 100.0 1.3E-27 2.9E-32 243.3 20.5 164 53-224 105-284 (612)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.7E-27 1.5E-31 238.9 24.3 220 5-224 32-351 (481)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-27 7.3E-32 232.9 20.1 151 55-224 3-171 (352)
9 KOG0109 RNA-binding protein LA 100.0 6.5E-28 1.4E-32 216.5 12.0 149 56-225 3-151 (346)
10 TIGR01622 SF-CC1 splicing fact 99.9 6E-27 1.3E-31 239.0 20.3 163 53-223 87-265 (457)
11 TIGR01628 PABP-1234 polyadenyl 99.9 7.4E-27 1.6E-31 244.1 20.1 212 11-225 129-365 (562)
12 TIGR01622 SF-CC1 splicing fact 99.9 3.6E-26 7.8E-31 233.3 24.6 212 11-224 131-448 (457)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1.9E-26 4.1E-31 241.0 22.2 199 12-224 43-261 (562)
14 KOG0148 Apoptosis-promoting RN 99.9 4.9E-27 1.1E-31 208.9 14.9 168 56-226 63-240 (321)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.5E-25 5.4E-30 227.4 21.6 167 54-223 274-479 (481)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.2E-25 6.9E-30 229.4 20.2 169 52-224 172-375 (509)
17 KOG0131 Splicing factor 3b, su 99.9 6.5E-25 1.4E-29 184.9 13.2 159 52-228 6-181 (203)
18 KOG0127 Nucleolar protein fibr 99.9 2.6E-24 5.5E-29 207.9 18.0 213 9-224 45-378 (678)
19 KOG0145 RNA-binding protein EL 99.9 8.4E-24 1.8E-28 187.2 18.0 208 12-224 84-358 (360)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 4.3E-24 9.3E-29 217.5 18.0 149 52-224 55-222 (578)
21 KOG0144 RNA-binding protein CU 99.9 1.1E-24 2.4E-29 205.2 12.1 159 53-227 32-209 (510)
22 KOG0127 Nucleolar protein fibr 99.9 6.5E-24 1.4E-28 205.2 15.1 167 56-225 6-197 (678)
23 KOG0106 Alternative splicing f 99.9 6.1E-24 1.3E-28 188.3 11.9 160 56-218 2-165 (216)
24 KOG0105 Alternative splicing f 99.9 2.4E-22 5.2E-27 169.5 19.7 157 54-213 5-177 (241)
25 KOG0117 Heterogeneous nuclear 99.9 6.6E-23 1.4E-27 194.2 17.2 150 52-225 80-249 (506)
26 KOG0145 RNA-binding protein EL 99.9 6.1E-23 1.3E-27 181.7 13.5 153 53-224 39-209 (360)
27 KOG0110 RNA-binding protein (R 99.9 2.1E-22 4.6E-27 200.7 13.8 160 55-224 515-693 (725)
28 KOG0124 Polypyrimidine tract-b 99.9 1E-22 2.2E-27 188.0 7.2 162 55-224 113-290 (544)
29 TIGR01645 half-pint poly-U bin 99.9 2.1E-20 4.6E-25 190.8 22.8 117 10-128 148-283 (612)
30 KOG0123 Polyadenylate-binding 99.9 3.3E-21 7.2E-26 188.1 15.9 197 10-224 36-246 (369)
31 KOG0147 Transcriptional coacti 99.9 5.1E-21 1.1E-25 186.3 14.7 211 11-223 221-527 (549)
32 KOG0144 RNA-binding protein CU 99.8 1.6E-20 3.6E-25 177.2 13.9 214 9-224 74-504 (510)
33 KOG0123 Polyadenylate-binding 99.8 3.3E-20 7.2E-25 181.1 15.5 143 56-226 2-155 (369)
34 KOG4207 Predicted splicing fac 99.8 5.6E-19 1.2E-23 151.8 18.3 79 146-225 8-94 (256)
35 KOG0107 Alternative splicing f 99.8 6.1E-19 1.3E-23 148.0 16.4 77 150-227 9-88 (195)
36 KOG4206 Spliceosomal protein s 99.8 1.1E-18 2.4E-23 153.2 15.4 167 53-222 7-220 (221)
37 KOG0147 Transcriptional coacti 99.8 4.9E-20 1.1E-24 179.5 7.3 168 51-224 175-358 (549)
38 KOG0107 Alternative splicing f 99.8 4E-18 8.7E-23 143.2 16.8 76 53-130 8-86 (195)
39 KOG0146 RNA-binding protein ET 99.8 4.6E-19 9.9E-24 157.8 10.9 172 54-226 18-367 (371)
40 KOG4676 Splicing factor, argin 99.7 1.6E-18 3.5E-23 161.8 6.3 160 56-220 8-222 (479)
41 KOG4205 RNA-binding protein mu 99.7 8.5E-18 1.8E-22 158.7 10.2 158 54-226 5-178 (311)
42 KOG0148 Apoptosis-promoting RN 99.7 1.2E-17 2.6E-22 149.2 10.5 132 53-225 4-143 (321)
43 KOG4207 Predicted splicing fac 99.7 5.1E-16 1.1E-20 133.7 18.4 78 51-130 9-94 (256)
44 KOG1548 Transcription elongati 99.7 5E-16 1.1E-20 143.5 16.2 171 51-223 130-351 (382)
45 KOG1457 RNA binding protein (c 99.7 2.5E-16 5.4E-21 137.1 13.2 160 52-212 31-274 (284)
46 KOG0110 RNA-binding protein (R 99.7 2.1E-16 4.6E-21 158.2 12.5 165 55-222 385-596 (725)
47 PLN03134 glycine-rich RNA-bind 99.7 3.2E-16 6.8E-21 133.7 11.4 76 53-130 32-115 (144)
48 TIGR01659 sex-lethal sex-letha 99.7 2.6E-16 5.6E-21 153.0 12.2 118 12-130 150-276 (346)
49 KOG0124 Polypyrimidine tract-b 99.7 2.5E-15 5.4E-20 139.4 15.4 118 11-130 155-291 (544)
50 KOG0120 Splicing factor U2AF, 99.7 9.8E-16 2.1E-20 151.6 13.5 211 11-223 223-491 (500)
51 KOG0121 Nuclear cap-binding pr 99.6 4.7E-16 1E-20 123.9 6.7 76 53-130 34-117 (153)
52 KOG1190 Polypyrimidine tract-b 99.6 1.9E-14 4E-19 135.6 14.6 170 56-225 151-374 (492)
53 KOG1190 Polypyrimidine tract-b 99.6 4.3E-14 9.4E-19 133.2 16.5 166 55-223 297-490 (492)
54 PF00076 RRM_1: RNA recognitio 99.6 7.6E-15 1.6E-19 109.2 8.5 63 58-122 1-70 (70)
55 PLN03134 glycine-rich RNA-bind 99.6 5.1E-14 1.1E-18 120.1 14.1 77 148-225 31-115 (144)
56 KOG1456 Heterogeneous nuclear 99.6 3.2E-13 6.9E-18 126.0 19.0 171 54-224 119-363 (494)
57 KOG4212 RNA-binding protein hn 99.5 2.4E-13 5.3E-18 129.0 16.0 165 55-222 44-292 (608)
58 PLN03120 nucleic acid binding 99.5 3.2E-14 7E-19 129.8 9.8 72 55-129 4-80 (260)
59 KOG0113 U1 small nuclear ribon 99.5 1.4E-13 3E-18 125.1 11.8 75 53-129 99-181 (335)
60 KOG0114 Predicted RNA-binding 99.5 7E-14 1.5E-18 107.4 8.3 77 52-130 15-96 (124)
61 KOG4211 Splicing factor hnRNP- 99.5 3.8E-13 8.2E-18 130.1 15.0 158 55-223 10-181 (510)
62 KOG0109 RNA-binding protein LA 99.5 6.5E-14 1.4E-18 126.7 8.9 120 6-130 28-151 (346)
63 COG0724 RNA-binding proteins ( 99.5 2.3E-13 5E-18 128.4 13.3 128 55-185 115-258 (306)
64 KOG0113 U1 small nuclear ribon 99.5 4.9E-12 1.1E-16 115.1 19.7 77 147-224 97-181 (335)
65 KOG0130 RNA-binding protein RB 99.5 8.5E-14 1.8E-18 112.1 6.2 74 55-130 72-153 (170)
66 PLN03121 nucleic acid binding 99.4 3.8E-13 8.1E-18 120.9 9.4 72 55-129 5-81 (243)
67 KOG0125 Ataxin 2-binding prote 99.4 1.9E-13 4E-18 125.7 7.3 76 53-130 94-175 (376)
68 PF14259 RRM_6: RNA recognitio 99.4 5.2E-13 1.1E-17 99.6 7.9 63 58-122 1-70 (70)
69 KOG0122 Translation initiation 99.4 4.2E-13 9E-18 118.9 8.4 75 53-129 187-269 (270)
70 PLN03213 repressor of silencin 99.4 4.9E-13 1.1E-17 128.7 9.5 75 53-129 8-88 (759)
71 KOG0105 Alternative splicing f 99.4 1.9E-12 4.2E-17 109.9 9.6 75 149-224 4-83 (241)
72 KOG0126 Predicted RNA-binding 99.4 5.4E-14 1.2E-18 119.0 -0.5 76 53-130 33-116 (219)
73 KOG1456 Heterogeneous nuclear 99.4 7.8E-12 1.7E-16 116.8 13.7 167 50-225 26-200 (494)
74 KOG4212 RNA-binding protein hn 99.4 1.4E-11 3E-16 117.2 15.5 72 149-221 534-608 (608)
75 PF00076 RRM_1: RNA recognitio 99.4 2.1E-12 4.5E-17 96.0 7.5 63 154-217 1-70 (70)
76 KOG0111 Cyclophilin-type pepti 99.4 7.9E-13 1.7E-17 115.1 5.9 77 53-131 8-92 (298)
77 KOG0121 Nuclear cap-binding pr 99.4 1.6E-12 3.4E-17 104.0 7.0 80 148-228 33-120 (153)
78 smart00362 RRM_2 RNA recogniti 99.4 4.1E-12 8.9E-17 94.1 8.9 65 57-123 1-71 (72)
79 KOG0130 RNA-binding protein RB 99.3 5.5E-12 1.2E-16 101.7 8.8 80 146-226 67-154 (170)
80 KOG0125 Ataxin 2-binding prote 99.3 3.4E-12 7.4E-17 117.5 8.1 76 147-223 92-173 (376)
81 PF13893 RRM_5: RNA recognitio 99.3 9E-12 2E-16 88.5 8.3 53 72-126 1-56 (56)
82 KOG0149 Predicted RNA-binding 99.3 3.4E-12 7.3E-17 112.8 6.6 73 53-128 10-90 (247)
83 PLN03120 nucleic acid binding 99.3 1.2E-11 2.6E-16 113.1 10.1 72 151-224 4-80 (260)
84 cd00590 RRM RRM (RNA recogniti 99.3 2.5E-11 5.4E-16 90.3 9.3 67 57-125 1-74 (74)
85 KOG0112 Large RNA-binding prot 99.3 2.4E-12 5.2E-17 132.3 4.0 151 53-224 370-531 (975)
86 smart00360 RRM RNA recognition 99.3 2.4E-11 5.1E-16 89.6 7.7 63 60-124 1-71 (71)
87 KOG0122 Translation initiation 99.2 2.2E-11 4.8E-16 108.1 8.5 75 149-224 187-269 (270)
88 KOG0415 Predicted peptidyl pro 99.2 4.9E-12 1.1E-16 117.4 4.2 77 52-130 236-320 (479)
89 KOG0129 Predicted RNA-binding 99.2 1.4E-10 2.9E-15 113.4 13.9 144 55-205 259-432 (520)
90 PLN03213 repressor of silencin 99.2 3.3E-11 7.1E-16 116.3 9.3 76 148-224 7-88 (759)
91 KOG0132 RNA polymerase II C-te 99.2 2.5E-11 5.5E-16 123.0 8.9 74 55-130 421-496 (894)
92 KOG0131 Splicing factor 3b, su 99.2 1.5E-11 3.2E-16 104.5 5.7 118 11-130 51-178 (203)
93 KOG0114 Predicted RNA-binding 99.2 6.7E-11 1.5E-15 91.1 8.7 74 149-223 16-94 (124)
94 KOG0120 Splicing factor U2AF, 99.2 3.6E-11 7.8E-16 119.4 8.6 169 53-225 173-370 (500)
95 PF14259 RRM_6: RNA recognitio 99.2 6.5E-11 1.4E-15 88.1 7.7 63 154-217 1-70 (70)
96 KOG0108 mRNA cleavage and poly 99.2 5E-11 1.1E-15 117.8 7.9 74 56-131 19-100 (435)
97 PF13893 RRM_5: RNA recognitio 99.2 1.1E-10 2.5E-15 82.8 7.7 53 169-221 1-56 (56)
98 PLN03121 nucleic acid binding 99.1 2.4E-10 5.2E-15 102.9 9.8 72 150-223 4-80 (243)
99 KOG4454 RNA binding protein (R 99.1 9.6E-12 2.1E-16 108.5 0.7 138 52-217 6-156 (267)
100 smart00362 RRM_2 RNA recogniti 99.1 2.8E-10 6E-15 84.1 8.1 66 153-219 1-72 (72)
101 KOG0111 Cyclophilin-type pepti 99.1 5.5E-11 1.2E-15 103.7 4.5 77 149-226 8-92 (298)
102 KOG0149 Predicted RNA-binding 99.0 3.1E-10 6.8E-15 100.5 6.3 73 149-223 10-90 (247)
103 KOG0126 Predicted RNA-binding 99.0 4.4E-11 9.5E-16 101.5 0.6 72 151-223 35-114 (219)
104 KOG0153 Predicted RNA-binding 99.0 6.8E-10 1.5E-14 103.4 8.4 79 50-129 223-303 (377)
105 cd00590 RRM RRM (RNA recogniti 99.0 1.6E-09 3.5E-14 80.4 8.6 67 153-220 1-74 (74)
106 KOG4211 Splicing factor hnRNP- 99.0 3.1E-09 6.7E-14 103.3 12.0 205 12-221 50-355 (510)
107 KOG4205 RNA-binding protein mu 99.0 6.4E-10 1.4E-14 105.5 7.1 117 12-131 49-178 (311)
108 smart00361 RRM_1 RNA recogniti 99.0 1.4E-09 3.1E-14 80.9 7.1 53 69-123 2-69 (70)
109 COG0724 RNA-binding proteins ( 99.0 1.5E-09 3.3E-14 102.2 8.1 72 151-223 115-194 (306)
110 smart00360 RRM RNA recognition 98.9 2.5E-09 5.5E-14 78.5 7.2 63 156-219 1-71 (71)
111 KOG2193 IGF-II mRNA-binding pr 98.9 1.2E-10 2.6E-15 110.5 -0.4 148 56-224 2-157 (584)
112 KOG4206 Spliceosomal protein s 98.9 3.4E-09 7.3E-14 93.8 7.7 78 148-226 6-92 (221)
113 KOG0146 RNA-binding protein ET 98.9 1.3E-09 2.9E-14 97.8 4.9 77 52-130 282-366 (371)
114 KOG4660 Protein Mei2, essentia 98.9 1.5E-09 3.3E-14 107.0 4.9 165 53-223 73-249 (549)
115 KOG1365 RNA-binding protein Fu 98.9 2.5E-09 5.4E-14 100.6 5.2 166 55-224 161-362 (508)
116 KOG0106 Alternative splicing f 98.9 2.6E-09 5.6E-14 95.4 5.0 74 152-226 2-75 (216)
117 KOG0108 mRNA cleavage and poly 98.8 5.7E-09 1.2E-13 103.4 7.3 75 152-227 19-101 (435)
118 KOG0415 Predicted peptidyl pro 98.8 6.3E-09 1.4E-13 97.0 6.1 79 145-224 233-319 (479)
119 KOG0128 RNA-binding protein SA 98.8 7.2E-10 1.6E-14 114.0 -0.1 133 55-223 667-814 (881)
120 KOG0132 RNA polymerase II C-te 98.8 9E-09 1.9E-13 104.8 7.6 75 149-224 419-495 (894)
121 smart00361 RRM_1 RNA recogniti 98.8 1.2E-08 2.6E-13 75.9 6.2 53 166-218 2-69 (70)
122 KOG4210 Nuclear localization s 98.8 6.9E-09 1.5E-13 98.2 5.1 160 54-224 87-264 (285)
123 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.7E-13 100.2 6.6 74 55-130 405-486 (940)
124 KOG4208 Nucleolar RNA-binding 98.7 2.3E-08 5E-13 87.1 7.2 75 53-129 47-130 (214)
125 KOG0151 Predicted splicing reg 98.7 2.2E-08 4.7E-13 101.1 7.7 76 53-130 172-258 (877)
126 KOG0153 Predicted RNA-binding 98.7 3.7E-08 8.1E-13 91.9 8.1 80 143-223 220-302 (377)
127 KOG0533 RRM motif-containing p 98.7 4.2E-08 9.2E-13 89.6 8.2 76 53-130 81-163 (243)
128 KOG4661 Hsp27-ERE-TATA-binding 98.6 8.7E-08 1.9E-12 94.4 7.6 76 148-224 402-485 (940)
129 KOG4676 Splicing factor, argin 98.5 1.7E-08 3.6E-13 95.4 0.5 59 55-114 151-213 (479)
130 KOG0116 RasGAP SH3 binding pro 98.5 1.6E-07 3.5E-12 92.6 6.8 70 55-127 288-365 (419)
131 KOG4208 Nucleolar RNA-binding 98.5 3.6E-07 7.9E-12 79.7 7.7 77 147-224 45-130 (214)
132 PF11608 Limkain-b1: Limkain b 98.5 5E-07 1.1E-11 67.4 7.4 71 56-130 3-78 (90)
133 KOG1457 RNA binding protein (c 98.4 1.5E-06 3.3E-11 76.6 9.5 80 148-228 31-122 (284)
134 KOG4209 Splicing factor RNPS1, 98.4 3.5E-07 7.7E-12 83.8 5.3 76 51-129 97-180 (231)
135 PF04059 RRM_2: RNA recognitio 98.4 2.1E-06 4.6E-11 67.3 8.1 73 56-128 2-86 (97)
136 KOG0116 RasGAP SH3 binding pro 98.4 2.7E-06 5.8E-11 84.1 10.8 72 151-224 288-367 (419)
137 KOG4454 RNA binding protein (R 98.3 3.8E-07 8.3E-12 80.1 2.0 77 147-224 5-87 (267)
138 KOG4660 Protein Mei2, essentia 98.2 7.3E-07 1.6E-11 88.4 3.9 69 148-217 72-143 (549)
139 PF11608 Limkain-b1: Limkain b 98.2 5.3E-06 1.1E-10 62.1 7.4 71 152-225 3-78 (90)
140 KOG0533 RRM motif-containing p 98.2 4.7E-06 1E-10 76.3 8.4 76 149-225 81-163 (243)
141 KOG0226 RNA-binding proteins [ 98.2 1.5E-06 3.1E-11 78.2 4.1 154 56-222 97-268 (290)
142 PF08777 RRM_3: RNA binding mo 98.2 3.8E-06 8.2E-11 67.4 6.0 69 56-124 2-75 (105)
143 KOG1365 RNA-binding protein Fu 98.1 4E-05 8.7E-10 72.8 12.6 148 54-205 59-225 (508)
144 KOG0151 Predicted splicing reg 98.1 3.8E-06 8.2E-11 85.3 6.1 75 148-223 171-256 (877)
145 KOG4307 RNA binding protein RB 98.1 7.1E-06 1.5E-10 83.1 8.1 162 55-221 311-511 (944)
146 KOG4209 Splicing factor RNPS1, 98.0 1.3E-05 2.9E-10 73.4 7.5 75 148-224 98-180 (231)
147 PF04059 RRM_2: RNA recognitio 98.0 4.1E-05 8.9E-10 60.1 8.0 72 152-224 2-87 (97)
148 KOG4210 Nuclear localization s 98.0 4.9E-06 1.1E-10 78.9 3.4 119 9-130 128-265 (285)
149 KOG0226 RNA-binding proteins [ 98.0 1E-05 2.3E-10 72.8 5.1 71 53-125 188-266 (290)
150 PF08777 RRM_3: RNA binding mo 98.0 2.3E-05 4.9E-10 62.9 6.6 68 152-220 2-76 (105)
151 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.2E-05 4.7E-10 54.7 5.0 50 56-106 2-53 (53)
152 KOG1995 Conserved Zn-finger pr 97.8 1.5E-05 3.3E-10 75.3 4.1 77 52-130 63-155 (351)
153 KOG1548 Transcription elongati 97.8 5E-05 1.1E-09 71.4 7.1 76 148-224 131-221 (382)
154 COG5175 MOT2 Transcriptional r 97.8 6.8E-05 1.5E-09 70.0 7.2 75 53-129 112-203 (480)
155 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.6E-09 50.9 5.5 50 152-203 2-53 (53)
156 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00024 5.2E-09 56.2 7.1 70 55-128 6-91 (100)
157 KOG0129 Predicted RNA-binding 97.6 0.00024 5.2E-09 70.4 8.3 70 53-125 368-450 (520)
158 KOG0128 RNA-binding protein SA 97.5 4.1E-06 8.9E-11 86.9 -4.7 148 55-212 571-735 (881)
159 KOG2202 U2 snRNP splicing fact 97.5 4.8E-05 1E-09 68.9 2.0 57 70-128 83-147 (260)
160 KOG2416 Acinus (induces apopto 97.5 8.7E-05 1.9E-09 74.3 4.0 77 53-129 442-522 (718)
161 KOG0112 Large RNA-binding prot 97.5 0.0001 2.2E-09 77.2 4.5 79 52-130 452-532 (975)
162 COG5175 MOT2 Transcriptional r 97.4 0.00034 7.4E-09 65.5 6.7 76 149-224 112-203 (480)
163 KOG1855 Predicted RNA-binding 97.4 9.8E-05 2.1E-09 71.3 3.1 63 52-114 228-311 (484)
164 KOG2314 Translation initiation 97.4 0.00031 6.7E-09 70.0 6.5 75 53-128 56-143 (698)
165 PF08952 DUF1866: Domain of un 97.3 0.00086 1.9E-08 56.3 7.5 56 70-128 51-106 (146)
166 KOG2202 U2 snRNP splicing fact 97.3 9.7E-05 2.1E-09 66.9 1.6 58 167-224 83-148 (260)
167 KOG4307 RNA binding protein RB 97.2 0.00083 1.8E-08 68.6 7.6 72 52-125 864-943 (944)
168 PF08952 DUF1866: Domain of un 97.2 0.0014 2.9E-08 55.1 7.3 77 147-224 23-107 (146)
169 KOG1995 Conserved Zn-finger pr 97.1 0.00034 7.4E-09 66.4 3.3 77 148-225 63-155 (351)
170 KOG0115 RNA-binding protein p5 97.1 0.0011 2.4E-08 60.2 6.2 98 100-223 5-113 (275)
171 PF08675 RNA_bind: RNA binding 97.1 0.0024 5.2E-08 48.0 6.8 56 55-111 9-64 (87)
172 KOG2416 Acinus (induces apopto 97.0 0.00063 1.4E-08 68.3 4.3 77 147-224 440-522 (718)
173 KOG1855 Predicted RNA-binding 97.0 0.00089 1.9E-08 64.8 5.0 65 147-212 227-312 (484)
174 KOG3152 TBP-binding protein, a 97.0 0.00044 9.5E-09 62.6 2.8 62 54-115 73-154 (278)
175 KOG1996 mRNA splicing factor [ 97.0 0.0015 3.2E-08 60.3 5.9 57 166-222 300-365 (378)
176 KOG1996 mRNA splicing factor [ 96.9 0.0022 4.7E-08 59.2 6.5 60 69-130 300-368 (378)
177 KOG2314 Translation initiation 96.9 0.0031 6.7E-08 63.2 7.7 71 150-221 57-141 (698)
178 PF15023 DUF4523: Protein of u 96.8 0.0048 1E-07 51.1 7.0 75 51-128 82-161 (166)
179 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.004 8.6E-08 49.3 6.1 69 151-222 6-90 (100)
180 KOG2135 Proteins containing th 96.6 0.0015 3.3E-08 64.0 3.2 61 162-223 383-445 (526)
181 KOG3152 TBP-binding protein, a 96.2 0.0035 7.6E-08 56.9 2.7 65 150-215 73-157 (278)
182 PF03880 DbpA: DbpA RNA bindin 96.2 0.032 6.9E-07 41.7 7.5 66 57-126 2-74 (74)
183 PF15023 DUF4523: Protein of u 96.2 0.034 7.4E-07 46.2 8.1 76 146-222 81-160 (166)
184 PF10309 DUF2414: Protein of u 96.0 0.044 9.5E-07 39.1 7.0 53 55-109 5-62 (62)
185 KOG2135 Proteins containing th 95.9 0.0048 1E-07 60.6 2.7 73 55-130 372-447 (526)
186 KOG2253 U1 snRNP complex, subu 95.7 0.0057 1.2E-07 62.6 2.2 72 52-126 37-108 (668)
187 KOG4849 mRNA cleavage factor I 95.6 0.01 2.2E-07 56.1 3.4 68 55-124 80-157 (498)
188 PF10309 DUF2414: Protein of u 95.5 0.074 1.6E-06 38.0 6.7 53 151-206 5-62 (62)
189 KOG2193 IGF-II mRNA-binding pr 95.1 0.024 5.2E-07 55.1 4.2 72 152-224 2-76 (584)
190 PF04847 Calcipressin: Calcipr 95.1 0.064 1.4E-06 47.5 6.4 61 68-130 8-72 (184)
191 PF08675 RNA_bind: RNA binding 95.0 0.12 2.6E-06 39.0 6.8 55 152-208 10-64 (87)
192 KOG4285 Mitotic phosphoprotein 95.0 0.11 2.4E-06 48.5 7.9 72 55-130 197-271 (350)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 94.9 0.029 6.4E-07 49.4 3.9 76 54-129 6-98 (176)
194 KOG2068 MOT2 transcription fac 94.8 0.009 1.9E-07 56.6 0.3 73 55-129 77-163 (327)
195 KOG2591 c-Mpl binding protein, 94.6 0.05 1.1E-06 54.7 4.9 68 55-124 175-247 (684)
196 PF03880 DbpA: DbpA RNA bindin 94.6 0.18 3.9E-06 37.5 6.9 59 162-221 11-74 (74)
197 KOG4574 RNA-binding protein (c 94.5 0.024 5.2E-07 59.6 2.7 74 57-130 300-375 (1007)
198 KOG2591 c-Mpl binding protein, 94.4 0.1 2.3E-06 52.5 6.6 69 151-220 175-248 (684)
199 KOG4849 mRNA cleavage factor I 94.2 0.044 9.5E-07 52.0 3.4 70 149-219 78-157 (498)
200 PF10567 Nab6_mRNP_bdg: RNA-re 94.1 1.6 3.4E-05 41.0 13.2 151 53-207 13-212 (309)
201 KOG0115 RNA-binding protein p5 94.0 0.044 9.6E-07 50.0 2.9 71 56-126 32-111 (275)
202 KOG2068 MOT2 transcription fac 93.9 0.02 4.2E-07 54.4 0.5 73 152-224 78-163 (327)
203 KOG4285 Mitotic phosphoprotein 93.9 0.17 3.6E-06 47.4 6.4 62 152-216 198-261 (350)
204 PF07576 BRAP2: BRCA1-associat 93.4 0.38 8.2E-06 38.8 7.1 59 56-114 14-79 (110)
205 PF04847 Calcipressin: Calcipr 92.9 0.22 4.7E-06 44.2 5.4 59 166-224 9-71 (184)
206 PF07292 NID: Nmi/IFP 35 domai 92.5 0.25 5.3E-06 38.1 4.6 74 92-174 1-74 (88)
207 PF07576 BRAP2: BRCA1-associat 92.1 2.7 5.9E-05 33.9 10.4 61 152-212 13-80 (110)
208 KOG2253 U1 snRNP complex, subu 91.9 0.13 2.8E-06 53.1 3.1 74 145-220 34-107 (668)
209 PF11767 SET_assoc: Histone ly 91.6 0.94 2E-05 32.9 6.5 55 66-123 11-65 (66)
210 PF11767 SET_assoc: Histone ly 91.4 0.93 2E-05 32.9 6.3 57 161-218 9-65 (66)
211 KOG2318 Uncharacterized conser 91.4 0.96 2.1E-05 46.2 8.5 77 52-128 171-307 (650)
212 PF14111 DUF4283: Domain of un 90.4 0.2 4.2E-06 42.9 2.4 107 66-185 28-138 (153)
213 KOG2318 Uncharacterized conser 88.9 1.6 3.5E-05 44.6 7.7 76 148-223 171-307 (650)
214 KOG4574 RNA-binding protein (c 88.5 0.28 6.1E-06 52.0 2.3 76 149-224 284-374 (1007)
215 KOG0804 Cytoplasmic Zn-finger 88.1 2.3 5E-05 42.2 8.0 61 55-115 74-141 (493)
216 KOG0835 Cyclin L [General func 85.7 3.7 8E-05 39.2 7.7 12 162-173 211-222 (367)
217 PF03467 Smg4_UPF3: Smg-4/UPF3 85.1 0.96 2.1E-05 39.9 3.5 72 151-223 7-97 (176)
218 KOG0804 Cytoplasmic Zn-finger 79.5 6.4 0.00014 39.2 7.0 62 151-213 74-142 (493)
219 PRK11634 ATP-dependent RNA hel 79.3 39 0.00085 36.2 13.6 61 162-223 497-562 (629)
220 KOG4019 Calcineurin-mediated s 78.7 2.3 4.9E-05 37.1 3.3 74 55-130 10-91 (193)
221 KOG2146 Splicing coactivator S 78.1 62 0.0013 30.5 13.4 11 389-399 322-332 (354)
222 KOG2891 Surface glycoprotein [ 77.2 1.2 2.6E-05 41.2 1.3 33 55-87 149-193 (445)
223 KOG2891 Surface glycoprotein [ 73.6 2.8 6E-05 38.9 2.6 102 84-185 69-194 (445)
224 KOG4483 Uncharacterized conser 71.1 6.6 0.00014 38.5 4.6 54 55-109 391-446 (528)
225 KOG4410 5-formyltetrahydrofola 66.8 7.6 0.00017 36.3 3.9 46 55-100 330-378 (396)
226 KOG2295 C2H2 Zn-finger protein 66.2 1.3 2.9E-05 44.9 -1.1 62 53-114 229-298 (648)
227 PF07292 NID: Nmi/IFP 35 domai 64.0 3.8 8.2E-05 31.6 1.2 64 14-77 1-74 (88)
228 PF03468 XS: XS domain; Inter 61.3 8.5 0.00018 31.4 2.9 45 57-101 10-68 (116)
229 KOG1295 Nonsense-mediated deca 61.1 7.9 0.00017 37.8 3.1 62 54-115 6-78 (376)
230 PF14111 DUF4283: Domain of un 60.1 5.9 0.00013 33.5 1.9 79 10-88 54-138 (153)
231 KOG4008 rRNA processing protei 59.3 6.3 0.00014 35.8 1.9 45 53-97 38-82 (261)
232 PF15513 DUF4651: Domain of un 57.4 19 0.00041 25.7 3.7 19 69-87 8-26 (62)
233 KOG0835 Cyclin L [General func 57.3 30 0.00065 33.3 6.1 11 77-87 130-140 (367)
234 KOG2888 Putative RNA binding p 55.5 8.3 0.00018 36.8 2.2 7 70-76 84-90 (453)
235 COG5638 Uncharacterized conser 55.5 50 0.0011 32.7 7.4 74 53-126 144-295 (622)
236 PF09869 DUF2096: Uncharacteri 52.9 56 0.0012 28.3 6.5 55 53-110 110-164 (169)
237 PRK14548 50S ribosomal protein 51.9 57 0.0012 24.9 5.8 53 57-109 22-81 (84)
238 KOG4410 5-formyltetrahydrofola 51.4 50 0.0011 31.1 6.4 47 149-196 328-377 (396)
239 PF02714 DUF221: Domain of unk 50.4 24 0.00051 34.2 4.6 33 92-128 1-33 (325)
240 PRK10629 EnvZ/OmpR regulon mod 49.8 1.3E+02 0.0027 25.0 8.1 70 55-126 35-108 (127)
241 KOG4019 Calcineurin-mediated s 49.3 14 0.00029 32.4 2.3 72 153-224 12-90 (193)
242 COG5638 Uncharacterized conser 47.0 99 0.0021 30.7 7.9 76 147-222 142-296 (622)
243 COG4874 Uncharacterized protei 46.1 76 0.0017 29.3 6.6 49 53-102 156-223 (318)
244 KOG4213 RNA-binding protein La 46.0 22 0.00048 31.1 3.1 49 55-108 111-169 (205)
245 COG0018 ArgS Arginyl-tRNA synt 45.8 91 0.002 33.0 8.2 99 64-184 55-162 (577)
246 KOG2888 Putative RNA binding p 44.2 17 0.00037 34.8 2.3 11 166-176 171-181 (453)
247 PF09902 DUF2129: Uncharacteri 40.5 58 0.0012 24.0 4.1 39 75-114 16-54 (71)
248 PRK10629 EnvZ/OmpR regulon mod 40.0 2E+02 0.0043 23.8 7.8 59 164-222 50-109 (127)
249 PF14893 PNMA: PNMA 39.1 48 0.001 32.3 4.6 72 53-129 16-97 (331)
250 cd00027 BRCT Breast Cancer Sup 38.5 1.2E+02 0.0026 20.6 5.8 47 57-103 3-49 (72)
251 PF08544 GHMP_kinases_C: GHMP 37.8 1.3E+02 0.0027 22.2 6.0 40 70-110 37-80 (85)
252 COG0150 PurM Phosphoribosylami 36.8 21 0.00045 34.6 1.7 45 68-112 274-322 (345)
253 KOG4483 Uncharacterized conser 36.2 63 0.0014 32.0 4.8 55 150-205 390-446 (528)
254 KOG0670 U4/U6-associated splic 35.0 76 0.0016 33.0 5.3 7 248-254 112-118 (752)
255 PF00403 HMA: Heavy-metal-asso 33.9 1.6E+02 0.0034 20.3 6.1 52 57-108 1-58 (62)
256 PRK02886 hypothetical protein; 33.7 81 0.0018 24.2 4.1 38 76-114 21-58 (87)
257 PF01782 RimM: RimM N-terminal 33.6 75 0.0016 23.8 4.1 33 81-114 46-78 (84)
258 PF02714 DUF221: Domain of unk 33.5 45 0.00098 32.2 3.6 34 189-224 1-34 (325)
259 PRK02302 hypothetical protein; 33.2 84 0.0018 24.3 4.2 38 76-114 23-60 (89)
260 PRK08559 nusG transcription an 32.5 1.2E+02 0.0025 26.0 5.6 31 82-112 36-69 (153)
261 PF03439 Spt5-NGN: Early trans 31.7 81 0.0018 23.9 4.0 31 178-208 33-66 (84)
262 COG1207 GlmU N-acetylglucosami 31.1 98 0.0021 31.2 5.3 104 10-115 45-177 (460)
263 KOG4365 Uncharacterized conser 30.6 8.1 0.00018 38.3 -2.1 70 56-128 4-81 (572)
264 PF08734 GYD: GYD domain; Int 30.5 1.6E+02 0.0035 22.6 5.6 42 166-207 22-68 (91)
265 KOG3671 Actin regulatory prote 30.5 37 0.00079 34.5 2.3 46 163-208 89-137 (569)
266 PF03439 Spt5-NGN: Early trans 29.3 92 0.002 23.6 3.9 34 81-114 33-69 (84)
267 KOG4008 rRNA processing protei 29.0 34 0.00073 31.3 1.6 36 148-184 37-72 (261)
268 PF11411 DNA_ligase_IV: DNA li 27.5 44 0.00096 21.0 1.5 17 65-81 19-35 (36)
269 TIGR02542 B_forsyth_147 Bacter 26.9 82 0.0018 25.5 3.3 87 63-175 11-97 (145)
270 COG0030 KsgA Dimethyladenosine 26.5 1.3E+02 0.0029 28.2 5.2 50 55-112 95-144 (259)
271 PF08734 GYD: GYD domain; Int 25.9 2.3E+02 0.0051 21.7 5.7 42 69-110 22-68 (91)
272 KOG0862 Synaptobrevin/VAMP-lik 25.9 44 0.00096 30.2 1.8 32 70-101 89-121 (216)
273 KOG2187 tRNA uracil-5-methyltr 25.5 38 0.00083 34.8 1.5 69 60-130 30-102 (534)
274 TIGR03636 L23_arch archaeal ri 25.1 2.6E+02 0.0056 20.9 5.5 52 57-108 15-73 (77)
275 KOG4357 Uncharacterized conser 24.3 3.6E+02 0.0077 22.2 6.5 42 171-212 98-139 (164)
276 COG1308 EGD2 Transcription fac 24.2 2E+02 0.0043 23.6 5.1 32 161-208 80-111 (122)
277 PF07530 PRE_C2HC: Associated 24.1 1E+02 0.0022 22.4 3.2 55 167-224 2-65 (68)
278 PRK11634 ATP-dependent RNA hel 24.0 2E+02 0.0043 30.9 6.6 69 55-127 486-561 (629)
279 PF11491 DUF3213: Protein of u 24.0 2E+02 0.0044 21.8 4.7 64 154-219 3-72 (88)
280 PRK08559 nusG transcription an 23.9 1.9E+02 0.0041 24.6 5.4 42 167-208 23-68 (153)
281 smart00596 PRE_C2HC PRE_C2HC d 23.3 91 0.002 22.8 2.7 54 167-223 2-64 (69)
282 PRK12450 foldase protein PrsA; 22.8 1.4E+02 0.0031 28.8 4.8 43 66-114 132-176 (309)
283 PRK12451 arginyl-tRNA syntheta 22.1 3.1E+02 0.0067 29.0 7.6 80 82-184 70-158 (562)
284 PF06804 Lipoprotein_18: NlpB/ 22.0 3.4E+02 0.0075 26.0 7.3 98 55-174 198-296 (303)
285 KOG1295 Nonsense-mediated deca 21.8 1E+02 0.0022 30.4 3.5 61 151-212 7-78 (376)
286 COG2608 CopZ Copper chaperone 21.4 3.2E+02 0.007 19.7 5.7 43 56-98 4-48 (71)
287 PF11823 DUF3343: Protein of u 21.3 1.1E+02 0.0025 22.2 3.1 26 187-212 2-27 (73)
288 PF11823 DUF3343: Protein of u 21.2 1.1E+02 0.0023 22.4 2.9 25 90-114 2-26 (73)
289 PF15063 TC1: Thyroid cancer p 21.0 63 0.0014 24.0 1.5 50 56-109 26-78 (79)
290 PF10567 Nab6_mRNP_bdg: RNA-re 20.7 1.8E+02 0.0038 27.8 4.7 74 148-222 12-106 (309)
291 PF09707 Cas_Cas2CT1978: CRISP 20.7 1.6E+02 0.0034 22.6 3.7 43 55-97 25-72 (86)
292 KOG3580 Tight junction protein 20.4 8E+02 0.017 26.1 9.5 37 149-185 59-95 (1027)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=5.6e-30 Score=248.30 Aligned_cols=156 Identities=24% Similarity=0.435 Sum_probs=138.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||+++|+++|+++|+.||+|++|+|. +|||||+|.++++|++||+.|||..| .++.|+|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~V 181 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLKV 181 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceeee
Confidence 3457899999999999999999999999999999882 58999999999999999999999999 8999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecC
Q 014331 124 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV 195 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~ 195 (426)
.|+.... ......+|||+|| +..+++++|+++|++||+|+.|.|. ++||||+|.+
T Consensus 182 ~~a~p~~----------------~~~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 182 SYARPGG----------------ESIKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ecccccc----------------cccccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 9986532 1123568999999 7899999999999999999999885 4799999999
Q ss_pred HHHHHHHHHHcCCCCCCC--ceEEEEEeecCCC
Q 014331 196 QEDATRALDATNMSKLTD--RVISVEYAVRDDD 226 (426)
Q Consensus 196 ~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 226 (426)
.++|++||+.||+..|.| ..|.|.++.....
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999999876 6899999887543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.5e-29 Score=246.98 Aligned_cols=214 Identities=19% Similarity=0.243 Sum_probs=165.8
Q ss_pred eeeEEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-
Q 014331 10 CHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM- 87 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i- 87 (426)
+..++||.|...+++++++. +++..+.+..+.+.... ........++|||+|||..+++++|+++|..||.|..+.|
T Consensus 44 s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~-~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~ 122 (352)
T TIGR01661 44 SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR-PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRIL 122 (352)
T ss_pred cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec-ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEE
Confidence 34589999999999999985 67777777666543211 1112234678999999999999999999999999998887
Q ss_pred -------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCC------------CCCC---C-----
Q 014331 88 -------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP------------GGGS---S----- 140 (426)
Q Consensus 88 -------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~------------~~~~---~----- 140 (426)
.+|||||+|.+.++|+.||+.|||..+...+..|.|.|+......... .... .
T Consensus 123 ~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (352)
T TIGR01661 123 SDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA 202 (352)
T ss_pred ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc
Confidence 278999999999999999999999988423467899988644311000 0000 0
Q ss_pred ---------------------------------------CC-----------------CCCCCCCCCcEEEEecCCCCCC
Q 014331 141 ---------------------------------------AR-----------------RPSTNTRPSKTLFVINFDPYHT 164 (426)
Q Consensus 141 ---------------------------------------~~-----------------~~~~~~~~~~~l~v~nl~p~~~ 164 (426)
.. ..........+|||+|| +..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL-~~~~ 281 (352)
T TIGR01661 203 AGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL-SPDT 281 (352)
T ss_pred cCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCC-CCCC
Confidence 00 00000122347999999 7889
Q ss_pred CHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 165 RTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 165 ~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
++++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|+|+.|.|.|+..+.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999984 7899999999999999999999999999999999998753
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.6e-28 Score=249.66 Aligned_cols=197 Identities=23% Similarity=0.288 Sum_probs=158.4
Q ss_pred eeEEEEecCCchhHHhhhcCCc-ceec-CeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRR-LYVL-GFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM 87 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i 87 (426)
.-++||.|.+.+++++++.... ..+. +..+.+. .....++|||+|||..+|+++|.++|.+|++ |+++.+
T Consensus 99 RGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~-------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv 171 (578)
T TIGR01648 99 RGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC-------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIV 171 (578)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc-------ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEE
Confidence 3589999999999999987433 2222 2221111 1134689999999999999999999999864 444444
Q ss_pred ---------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEec
Q 014331 88 ---------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVIN 158 (426)
Q Consensus 88 ---------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 158 (426)
.+|||||+|.+.++|..|++.|+...+.+.|+.|.|+|+...... ........++|||+|
T Consensus 172 ~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~-----------d~~~~~~~k~LfVgN 240 (578)
T TIGR01648 172 YHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEV-----------DEDVMAKVKILYVRN 240 (578)
T ss_pred eccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccc-----------cccccccccEEEEeC
Confidence 279999999999999999998875433237999999999765421 112234467999999
Q ss_pred CCCCCCCHHHHHHhhccC--CceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 159 FDPYHTRTRDLERHFEPY--GKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 159 l~p~~~~~~~L~~~F~~~--G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
| +..+++++|+++|++| |.|+.|.+.++||||+|++.++|++|++.|||..|.|+.|+|.|++....
T Consensus 241 L-~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 241 L-MTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred C-CCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9 7899999999999999 99999999999999999999999999999999999999999999987643
No 4
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=5.6e-28 Score=249.91 Aligned_cols=210 Identities=16% Similarity=0.227 Sum_probs=164.0
Q ss_pred eeEEEEecCCchhHHhhhcCCcceecCeecccccchh----------------------------hhhccCCCccEEEcC
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSI----------------------------AAFEVAMMRPIFCGN 62 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~l~V~n 62 (426)
..++||.|.+.++++.+|.+++..+.|..+.+..... ........++|||+|
T Consensus 223 kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 302 (509)
T TIGR01642 223 KNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGN 302 (509)
T ss_pred CCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeC
Confidence 3589999999999999999999888886665432100 000112357899999
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCC
Q 014331 63 FEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR 134 (426)
Q Consensus 63 Lp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~ 134 (426)
||..+|+++|+++|+.||.|..|.| .+|||||+|.+.++|+.||+.|||+.| .|+.|.|.++........
T Consensus 303 lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~--~~~~l~v~~a~~~~~~~~ 380 (509)
T TIGR01642 303 LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT--GDNKLHVQRACVGANQAT 380 (509)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECccCCCCCC
Confidence 9999999999999999999999887 379999999999999999999999999 799999999865432111
Q ss_pred CCCCC--------C----CCCCCCCCCCCcEEEEecCCCCC----------CCHHHHHHhhccCCceEEEEEe-------
Q 014331 135 PGGGS--------S----ARRPSTNTRPSKTLFVINFDPYH----------TRTRDLERHFEPYGKIISVRIR------- 185 (426)
Q Consensus 135 ~~~~~--------~----~~~~~~~~~~~~~l~v~nl~p~~----------~~~~~L~~~F~~~G~v~~v~i~------- 185 (426)
..... . .........++.+|+|.|| ... ...++|+++|.+||.|+.|.|+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~-~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 381 IDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNL-VTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred ccccccccccccccccchhhhccccCCCceEEEeccC-CchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 10000 0 0001122346788999998 321 1136799999999999999996
Q ss_pred ----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 186 ----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 186 ----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
.|+|||+|.+.++|++|+..|||.+|+|+.|.|.|...
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 27899999999999999999999999999999999754
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=228.47 Aligned_cols=200 Identities=23% Similarity=0.323 Sum_probs=163.0
Q ss_pred eeeEEEEecCCchhHHhhhcCCcceecCeeccccc-chhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQ-LSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM 87 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i 87 (426)
..-++||.|..-+++|.++.+ +++.++...+ +... ....++.|||||||.+.++++|.+.|++.++ |++|.|
T Consensus 124 nRGYAFVtf~~Ke~Aq~Aik~----lnn~Eir~GK~igvc--~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdViv 197 (506)
T KOG0117|consen 124 NRGYAFVTFCTKEEAQEAIKE----LNNYEIRPGKLLGVC--VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIV 197 (506)
T ss_pred CcceEEEEeecHHHHHHHHHH----hhCccccCCCEeEEE--EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEE
Confidence 345788888888877777742 3333333222 1111 1245789999999999999999999999875 677777
Q ss_pred ---------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEec
Q 014331 88 ---------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVIN 158 (426)
Q Consensus 88 ---------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 158 (426)
.+|||||+|.+...|..|-..|-.-.|.++|+.|.|+||.+.. ..........+.|||.|
T Consensus 198 y~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~-----------e~ded~ms~VKvLYVRN 266 (506)
T KOG0117|consen 198 YPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE-----------EPDEDTMSKVKVLYVRN 266 (506)
T ss_pred ecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCccc-----------CCChhhhhheeeeeeec
Confidence 2899999999999999998887654444589999999998876 22233456678999999
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCCC
Q 014331 159 FDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDD 227 (426)
Q Consensus 159 l~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 227 (426)
| +..+|++.|+++|.+||.|..|..++.||||+|.+.++|.+|++.|||++|+|..|.|.+|++....
T Consensus 267 L-~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 267 L-MESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred c-chhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 9 8999999999999999999999999999999999999999999999999999999999999986543
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.3e-27 Score=243.35 Aligned_cols=164 Identities=18% Similarity=0.423 Sum_probs=140.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+||++.+|+++|+++|..||+|.+|.| ++|||||+|.+.++|+.||+.|||..| .|+.|.|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i--~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE--ecceeeec
Confidence 34789999999999999999999999999999998 489999999999999999999999999 79999998
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQ 196 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~ 196 (426)
+......... . ............+|||+|| +..+++++|+++|+.||.|+.|.|. +|||||+|.+.
T Consensus 183 rp~~~p~a~~-~----~~~~~~~~~~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 183 RPSNMPQAQP-I----IDMVQEEAKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred cccccccccc-c----cccccccccccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 7543321100 0 0011112234579999999 7889999999999999999999984 67999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 197 EDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 197 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
++|.+||+.||+..|+|+.|.|.++...
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999999999999999999999998864
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=6.7e-27 Score=238.92 Aligned_cols=220 Identities=18% Similarity=0.160 Sum_probs=165.2
Q ss_pred eeeeeeeeEEEEecCCchhHHhhhc---CCcceecCeecccccc-----hhhh------hccCCCccEEEcCCCCCCCHH
Q 014331 5 VSVYQCHYLLIVYSHSVWPVQKKYL---PRRLYVLGFRRSHSQL-----SIAA------FEVAMMRPIFCGNFEYDARQS 70 (426)
Q Consensus 5 vs~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~l~V~nLp~~~te~ 70 (426)
|.+.....++||+|.+.+++++++. .+...+.|..+.+..- .... .......+|||+||++.+|++
T Consensus 32 v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~ 111 (481)
T TIGR01649 32 VMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLD 111 (481)
T ss_pred EEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHH
Confidence 3444455689999999999999886 3555666655543221 1000 011223479999999999999
Q ss_pred HHHHHHhhcCCeeEEEEe----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCC------C-----C-
Q 014331 71 DLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI------R-----R- 134 (426)
Q Consensus 71 ~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~------~-----~- 134 (426)
+|+++|+.||+|+.|.|. .++|||+|.+.++|.+|++.|||..|...+..|+|+|++..... . .
T Consensus 112 ~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~ 191 (481)
T TIGR01649 112 VLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNP 191 (481)
T ss_pred HHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCC
Confidence 999999999999999883 36999999999999999999999998312358999998753310 0 0
Q ss_pred --CCCCC-----------C----------------------C---------------C-------------C----CCCC
Q 014331 135 --PGGGS-----------S----------------------A---------------R-------------R----PSTN 147 (426)
Q Consensus 135 --~~~~~-----------~----------------------~---------------~-------------~----~~~~ 147 (426)
++... . . . . ....
T Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (481)
T TIGR01649 192 DLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAG 271 (481)
T ss_pred CCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCC
Confidence 00000 0 0 0 0 0001
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
..++.+|||+||++..+++++|.++|+.||.|..|.|+ +|+|||+|.+.++|..|+..|||..|.|+.|.|.+++..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 23567999999943468999999999999999999985 689999999999999999999999999999999998764
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.3e-27 Score=232.87 Aligned_cols=151 Identities=21% Similarity=0.480 Sum_probs=135.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.++|||+|||..+|+++|+++|+.||+|.+|+|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~a 80 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSYA 80 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEee
Confidence 5789999999999999999999999999999983 68999999999999999999999999 7999999998
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHH
Q 014331 127 KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQED 198 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~ 198 (426)
.+.. ......+|||+|| +..+++++|+.+|..||.|..+.+. +|||||+|.+.++
T Consensus 81 ~~~~----------------~~~~~~~l~v~~l-~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 81 RPSS----------------DSIKGANLYVSGL-PKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred cccc----------------cccccceEEECCc-cccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 6543 1223568999999 7889999999999999999988884 5799999999999
Q ss_pred HHHHHHHcCCCCCCC--ceEEEEEeecC
Q 014331 199 ATRALDATNMSKLTD--RVISVEYAVRD 224 (426)
Q Consensus 199 A~~A~~~l~g~~~~g--~~l~v~~a~~~ 224 (426)
|+.|++.|||..+.| ..|.|.++...
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 999999999999987 56788887654
No 9
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=6.5e-28 Score=216.51 Aligned_cols=149 Identities=30% Similarity=0.535 Sum_probs=141.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP 135 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~ 135 (426)
-+|||||||..+++.+|+.||++||+|++|.|.|.||||..++...|+.||..|+|..| +|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtL--hg~nInVeaSksKs----- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASKSKS----- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhccccee--cceEEEEEeccccC-----
Confidence 47999999999999999999999999999999999999999999999999999999999 89999999887653
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCce
Q 014331 136 GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRV 215 (426)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 215 (426)
....+|+|+|| ...++.++|+..|++||.|+.|+|.++|+||.|.-.++|..|+..||+.+|.|+.
T Consensus 76 -------------k~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~ 141 (346)
T KOG0109|consen 76 -------------KASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKR 141 (346)
T ss_pred -------------CCccccccCCC-CccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccce
Confidence 45789999999 6788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q 014331 216 ISVEYAVRDD 225 (426)
Q Consensus 216 l~v~~a~~~~ 225 (426)
++|.++...-
T Consensus 142 m~vq~stsrl 151 (346)
T KOG0109|consen 142 MHVQLSTSRL 151 (346)
T ss_pred eeeeeecccc
Confidence 9999988753
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6e-27 Score=239.04 Aligned_cols=163 Identities=27% Similarity=0.435 Sum_probs=139.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|.+|.|. +|||||+|.+.++|++|| .|+|..| .|+.|.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~--~g~~i~v~ 163 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQML--LGRPIIVQ 163 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEE--CCeeeEEe
Confidence 457899999999999999999999999999999993 799999999999999999 6999999 79999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQ 196 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~ 196 (426)
++........... .......+...+|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.
T Consensus 164 ~~~~~~~~~~~~~----~~~~~~~p~~~~l~v~nl-~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 164 SSQAEKNRAAKAA----THQPGDIPNFLKLYVGNL-HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred ecchhhhhhhhcc----cccCCCCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 8765442211110 111111233789999999 7889999999999999999999885 57999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 197 EDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 197 ~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
++|.+|++.|||..|.|+.|.|.|+..
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999999874
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=7.4e-27 Score=244.06 Aligned_cols=212 Identities=17% Similarity=0.272 Sum_probs=166.3
Q ss_pred eeEEEEecCCchhHHhhhc-CCcceecCeecccccch----hhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 014331 11 HYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLS----IAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRV 85 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v 85 (426)
..++||.|...++++.++. +++..+.+..+...... .........++|||+||+.++|+++|+++|..||+|..|
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~ 208 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSA 208 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEE
Confidence 3578999999999988884 45555555544432211 001123446789999999999999999999999999999
Q ss_pred EEe-------CCEEEEEEcChHhHHHHHHhcCCceecCC----CcEEEEEEeeccCCCCCCCCC--CCCCCCCCCCCCCc
Q 014331 86 DMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRK----GRRLRVEWTKHERGIRRPGGG--SSARRPSTNTRPSK 152 (426)
Q Consensus 86 ~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~----g~~i~V~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~ 152 (426)
.|. +|||||+|.+.++|.+|++.|||..| . |..|.|.++............ ..............
T Consensus 209 ~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i--~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~ 286 (562)
T TIGR01628 209 AVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI--GLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGV 286 (562)
T ss_pred EEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe--cccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCC
Confidence 883 68999999999999999999999999 7 899999887654422100000 00011112234567
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
+|||+|| +..+++++|+++|++||.|+.|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.+|..+.
T Consensus 287 ~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 287 NLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred EEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 8999999 7889999999999999999999984 5899999999999999999999999999999999998753
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=3.6e-26 Score=233.32 Aligned_cols=212 Identities=18% Similarity=0.333 Sum_probs=163.6
Q ss_pred eeEEEEecCCchhHHhhhcCCcceecCeecccccchhh-----------hhccCCCccEEEcCCCCCCCHHHHHHHHhhc
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIA-----------AFEVAMMRPIFCGNFEYDARQSDLERLFRRY 79 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 79 (426)
..++||.|...+++++++.+++..+.+..+.+...... .......++|||+|||..+|+++|+++|+.|
T Consensus 131 kg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~ 210 (457)
T TIGR01622 131 KGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF 210 (457)
T ss_pred ceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc
Confidence 45899999999999999999998888876654321100 0011225899999999999999999999999
Q ss_pred CCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCC-----------C-----
Q 014331 80 GKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRR-----------P----- 135 (426)
Q Consensus 80 G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~-----------~----- 135 (426)
|.|..|.|. +|||||+|.+.++|.+||+.|||..| .|+.|.|.|+........ .
T Consensus 211 G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i--~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (457)
T TIGR01622 211 GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL--AGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKN 288 (457)
T ss_pred CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE--CCEEEEEEEccCCCccccchhhhccccccccCCcC
Confidence 999999883 68999999999999999999999999 799999999653210000 0
Q ss_pred ---------------CC---CC----C---------------CC---------------------CCCCCCCCCcEEEEe
Q 014331 136 ---------------GG---GS----S---------------AR---------------------RPSTNTRPSKTLFVI 157 (426)
Q Consensus 136 ---------------~~---~~----~---------------~~---------------------~~~~~~~~~~~l~v~ 157 (426)
.. .. . .. .......+..+|+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 368 (457)
T TIGR01622 289 LNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLS 368 (457)
T ss_pred CCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEe
Confidence 00 00 0 00 000022556789999
Q ss_pred cCCCCCCC---------HHHHHHhhccCCceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 158 NFDPYHTR---------TRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 158 nl~p~~~~---------~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
||...... .+||+++|.+||.|+.|.|. .|++||+|.+.++|++|++.|||.+|+|+.|.|.+....
T Consensus 369 n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 369 NMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 98322221 36899999999999999885 689999999999999999999999999999999997653
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.9e-26 Score=241.02 Aligned_cols=199 Identities=19% Similarity=0.253 Sum_probs=165.4
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchh-hhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSI-AAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-- 87 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-- 87 (426)
.++||.|.+.+++++++. ++...+.+..+.+..... .........+|||+||+.++|+++|+++|+.||.|..|+|
T Consensus 43 G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~ 122 (562)
T TIGR01628 43 GYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVAT 122 (562)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeee
Confidence 489999999999999995 455557776665543221 1222334678999999999999999999999999999988
Q ss_pred -----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCC
Q 014331 88 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 162 (426)
Q Consensus 88 -----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~ 162 (426)
++|||||+|.+.++|++||+.|||..+ .|+.|.|.......... ........+|||+|| +.
T Consensus 123 ~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~--~~~~i~v~~~~~~~~~~-----------~~~~~~~~~l~V~nl-~~ 188 (562)
T TIGR01628 123 DENGKSRGYGFVHFEKEESAKAAIQKVNGMLL--NDKEVYVGRFIKKHERE-----------AAPLKKFTNLYVKNL-DP 188 (562)
T ss_pred cCCCCcccEEEEEECCHHHHHHHHHHhcccEe--cCceEEEeccccccccc-----------cccccCCCeEEEeCC-CC
Confidence 378999999999999999999999999 89999998765443211 112344578999999 78
Q ss_pred CCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCC----CceEEEEEeecC
Q 014331 163 HTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLT----DRVISVEYAVRD 224 (426)
Q Consensus 163 ~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~ 224 (426)
.+++++|+++|..||.|..+.+. +|||||+|.+.++|.+|++.|||..|. |..|.|.++..+
T Consensus 189 ~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 189 SVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 89999999999999999999885 579999999999999999999999999 999999987654
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.9e-27 Score=208.91 Aligned_cols=168 Identities=20% Similarity=0.420 Sum_probs=144.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
-.|||+.|...++-++|++.|.+||+|-+++| +|||+||.|.+.++|+.||..|||..| .++.|+-.|+.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWAT 140 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWAT 140 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeeccccc
Confidence 46999999999999999999999999999988 499999999999999999999999999 59999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHH
Q 014331 128 HERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDA 205 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~ 205 (426)
.+..............-....+.+++|||+|+ +..+++++|++.|..||.|..|++. +||+||.|.+.|.|.+||..
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I-~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNI-ASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCc-CccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHH
Confidence 77622111110001112345677899999999 5678899999999999999999995 78999999999999999999
Q ss_pred cCCCCCCCceEEEEEeecCCC
Q 014331 206 TNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 206 l~g~~~~g~~l~v~~a~~~~~ 226 (426)
||+.+|+|..+++.|.+....
T Consensus 220 mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hcCceeCceEEEEeccccCCC
Confidence 999999999999999987643
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.5e-25 Score=227.39 Aligned_cols=167 Identities=26% Similarity=0.352 Sum_probs=138.6
Q ss_pred CCccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 54 MMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 54 ~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
..++|||+||++ .+|+++|++||+.||.|..|+|. +|||||+|.+.++|+.||..|||..| .|+.|.|.+++..
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l--~g~~l~v~~s~~~ 351 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKL--FGKPLRVCPSKQQ 351 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEEEcccc
Confidence 467999999998 69999999999999999999984 79999999999999999999999999 8999999998665
Q ss_pred CCCCCCCC----CC------CC------C-----CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCc--eEEEEEe-
Q 014331 130 RGIRRPGG----GS------SA------R-----RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK--IISVRIR- 185 (426)
Q Consensus 130 ~~~~~~~~----~~------~~------~-----~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~--v~~v~i~- 185 (426)
........ +. .. . .......++.+|||+|| |..+++++|+++|+.||. |+.|.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL-p~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI-PLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC-CCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 32111000 00 00 0 00012356789999999 789999999999999998 8888773
Q ss_pred -----cCEEEEEecCHHHHHHHHHHcCCCCCCCce------EEEEEeec
Q 014331 186 -----RNFAFVQYEVQEDATRALDATNMSKLTDRV------ISVEYAVR 223 (426)
Q Consensus 186 -----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~------l~v~~a~~ 223 (426)
+++|||+|.+.++|.+||..|||..|.|+. |+|.|++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 489999999999999999999999999885 99999865
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.2e-25 Score=229.40 Aligned_cols=169 Identities=16% Similarity=0.273 Sum_probs=135.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRY------------GKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRK 117 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~ 117 (426)
....++|||||||+.+|+++|.++|..| +.|..|.+. +|||||+|.+.++|..|| +|||+.| .
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~--~ 248 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIY--S 248 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEe--e
Confidence 3457899999999999999999999975 456666663 899999999999999999 7999999 7
Q ss_pred CcEEEEEEeeccCCCCCCCCC-----C--C------CCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE
Q 014331 118 GRRLRVEWTKHERGIRRPGGG-----S--S------ARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI 184 (426)
Q Consensus 118 g~~i~V~~a~~~~~~~~~~~~-----~--~------~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i 184 (426)
|..|.|............... . . ............+|||+|| |..+++++|+++|+.||.|..+.|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999765433211000000 0 0 0011112345679999999 899999999999999999999887
Q ss_pred e--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 185 R--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 185 ~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
. +|||||+|.+.++|..|++.|||..|+|+.|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 3 689999999999999999999999999999999998753
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=6.5e-25 Score=184.90 Aligned_cols=159 Identities=28% Similarity=0.460 Sum_probs=138.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
..+..|||||||+..++++.|.+||-+.|+|++|.|+ +|||||+|.++|+|+-||+.||...| -|++|+|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEE
Confidence 3556799999999999999999999999999999994 79999999999999999999999888 7999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEE-EE--------ecCEEEEEec
Q 014331 124 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV-RI--------RRNFAFVQYE 194 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v-~i--------~~g~afV~f~ 194 (426)
..+.... ....-+.+|||+||++ .+++..|.+.|+.||.+... .+ +++||||.|.
T Consensus 84 ~kas~~~---------------~nl~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 84 NKASAHQ---------------KNLDVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred Eeccccc---------------ccccccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 9886221 1233347899999975 88899999999999988762 21 3679999999
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEEeecCCCCC
Q 014331 195 VQEDATRALDATNMSKLTDRVISVEYAVRDDDDR 228 (426)
Q Consensus 195 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 228 (426)
+.+.+.+|+..|||..++.+.|+|.++..+....
T Consensus 148 sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999876544
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=207.94 Aligned_cols=213 Identities=23% Similarity=0.394 Sum_probs=163.2
Q ss_pred eeeeEEEEecCCchhHHhhhcCCcc-eecCeecccccch---------------h-hhh---------ccCCCccEEEcC
Q 014331 9 QCHYLLIVYSHSVWPVQKKYLPRRL-YVLGFRRSHSQLS---------------I-AAF---------EVAMMRPIFCGN 62 (426)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------~-~~~---------~~~~~~~l~V~n 62 (426)
.|..+.||.|+.++++|.++.+... .+.|..+.+.... + ..+ ...+...|.|.|
T Consensus 45 ~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRN 124 (678)
T KOG0127|consen 45 EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRN 124 (678)
T ss_pred cccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeec
Confidence 5677899999999999998875544 2333333221100 0 000 012267899999
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCC
Q 014331 63 FEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP 135 (426)
Q Consensus 63 Lp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~ 135 (426)
||+.+.+.+|+.+|+.||.|.+|.|+ .|||||+|....+|..||+.|||..| +|++|.|.||..+......
T Consensus 125 LPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWAV~Kd~ye~t 202 (678)
T KOG0127|consen 125 LPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWAVDKDTYEDT 202 (678)
T ss_pred CCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeeeccccccccc
Confidence 99999999999999999999999994 69999999999999999999999999 8999999999776522110
Q ss_pred C------------------------------------------CC-C---------------------CCC----CC---
Q 014331 136 G------------------------------------------GG-S---------------------SAR----RP--- 144 (426)
Q Consensus 136 ~------------------------------------------~~-~---------------------~~~----~~--- 144 (426)
+ .+ . .+. +.
T Consensus 203 a~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~ 282 (678)
T KOG0127|consen 203 AHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQN 282 (678)
T ss_pred chhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhcc
Confidence 0 00 0 000 00
Q ss_pred ---CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHHHHHHHHHHc-----CC
Q 014331 145 ---STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDAT-----NM 208 (426)
Q Consensus 145 ---~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l-----~g 208 (426)
........+|||.|| ++.+++++|.++|.+||.|.++.| ++|.|||.|.+..+|++||... .|
T Consensus 283 k~~~en~~~~~tVFvRNL-~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g 361 (678)
T KOG0127|consen 283 KTTRENITEGKTVFVRNL-PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDG 361 (678)
T ss_pred ccccccccccceEEEecC-CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCc
Confidence 111222379999999 899999999999999999999888 3789999999999999999876 33
Q ss_pred -CCCCCceEEEEEeecC
Q 014331 209 -SKLTDRVISVEYAVRD 224 (426)
Q Consensus 209 -~~~~g~~l~v~~a~~~ 224 (426)
..|+|+.|.|..|...
T Consensus 362 ~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 362 SVLLDGRLLKVTLAVTR 378 (678)
T ss_pred eEEEeccEEeeeeccch
Confidence 6788999999998764
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.4e-24 Score=187.15 Aligned_cols=208 Identities=20% Similarity=0.321 Sum_probs=157.4
Q ss_pred eEEEEecCCchhHHhhhcCCcceecCeecccccchh----hhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 014331 12 YLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSI----AAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 87 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i 87 (426)
.+.||.+-..+++.+++. .++|+.++.+.+++ ...+.....+|||.+||..+|..||+++|..||.|..-+|
T Consensus 84 GYGFVNYv~p~DAe~Ain----tlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRi 159 (360)
T KOG0145|consen 84 GYGFVNYVRPKDAEKAIN----TLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRI 159 (360)
T ss_pred ccceeeecChHHHHHHHh----hhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhh
Confidence 355666666666666653 23444444444321 2233445678999999999999999999999999876555
Q ss_pred --------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCC-------------CCCC-------
Q 014331 88 --------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP-------------GGGS------- 139 (426)
Q Consensus 88 --------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~-------------~~~~------- 139 (426)
++|.+||.|...++|+.||..|||..-.-+-.+|.|+|++........ ..+.
T Consensus 160 L~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r 239 (360)
T KOG0145|consen 160 LVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQR 239 (360)
T ss_pred hhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhh
Confidence 599999999999999999999999755225678999999776432110 0000
Q ss_pred ---------------------------CCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------
Q 014331 140 ---------------------------SARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------- 185 (426)
Q Consensus 140 ---------------------------~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------- 185 (426)
.+...........+|||-|| ..+++|..|+++|..||.|..|.+.
T Consensus 240 ~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnk 318 (360)
T KOG0145|consen 240 FRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNK 318 (360)
T ss_pred hccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCccc
Confidence 00001222344689999999 6778899999999999999999984
Q ss_pred -cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 186 -RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 186 -~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
+||+||.+.+.++|..||..|||..++++.|.|.|...+
T Consensus 319 CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 319 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 689999999999999999999999999999999997654
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=4.3e-24 Score=217.48 Aligned_cols=149 Identities=26% Similarity=0.415 Sum_probs=128.0
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||.++||++|.++|++||+|.+|+| ++|||||+|.+.++|++||+.||+..|. .|+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCcccccc
Confidence 344689999999999999999999999999999998 4799999999999999999999999883 47887776
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCc-eEEEEE---------ecCEEEEEec
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRI---------RRNFAFVQYE 194 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~-v~~v~i---------~~g~afV~f~ 194 (426)
++. ..++|||+|| |..+++++|.++|.+++. |+.+.+ .++||||+|.
T Consensus 134 ~S~----------------------~~~rLFVgNL-P~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 134 ISV----------------------DNCRLFVGGI-PKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred ccc----------------------cCceeEeecC-CcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC
Confidence 552 2468999999 788889999999999963 444443 2689999999
Q ss_pred CHHHHHHHHHHcCC--CCCCCceEEEEEeecC
Q 014331 195 VQEDATRALDATNM--SKLTDRVISVEYAVRD 224 (426)
Q Consensus 195 ~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~~ 224 (426)
+.++|..|+..|+. ..+.|+.|.|+|+...
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 99999999998864 4578999999998764
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.1e-24 Score=205.21 Aligned_cols=159 Identities=24% Similarity=0.422 Sum_probs=137.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCce-ecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTE-FGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~-~~~~g~~i~V 123 (426)
...-+||||-||..++|.||+++|++||.|.+|.| ++|||||.|.+.++|.+|+.+|++.. |.-.-.+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44678999999999999999999999999999998 38999999999999999999998854 3224568999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCH
Q 014331 124 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQ 196 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~ 196 (426)
.++..+... .....+|||+-| +..++|.+|+++|.+||.|++|.|. +|||||+|.+.
T Consensus 112 k~Ad~E~er---------------~~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 112 KYADGERER---------------IVEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred cccchhhhc---------------cccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehH
Confidence 999776521 244678999999 7899999999999999999999995 68999999999
Q ss_pred HHHHHHHHHcCCCCC-C--CceEEEEEeecCCCC
Q 014331 197 EDATRALDATNMSKL-T--DRVISVEYAVRDDDD 227 (426)
Q Consensus 197 ~~A~~A~~~l~g~~~-~--g~~l~v~~a~~~~~~ 227 (426)
+.|..||+.|||..- . ...|.|.||..+++.
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 999999999999654 3 478999999987654
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.5e-24 Score=205.17 Aligned_cols=167 Identities=28% Similarity=0.541 Sum_probs=143.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
.||||++||+.+|.++|.++|+.+|+|..+.+ .+|||||.|.-.+|++.|++.+++..| .|+.|.|.++.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceeccccccc
Confidence 69999999999999999999999999999888 389999999999999999999999999 79999999997
Q ss_pred ccCCCCC--CCCCCCCCCC--------CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEE
Q 014331 128 HERGIRR--PGGGSSARRP--------STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAF 190 (426)
Q Consensus 128 ~~~~~~~--~~~~~~~~~~--------~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~af 190 (426)
....... +......... .....+-..|.|.|| |+.+.+.+|+.+|+.||.|..|.|| .||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 7653321 1110000000 111344789999999 8999999999999999999999997 47999
Q ss_pred EEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 191 VQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 191 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
|.|....+|.+|++.+||..|+|+.|-|.||..+.
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999999998864
No 23
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.1e-24 Score=188.29 Aligned_cols=160 Identities=44% Similarity=0.725 Sum_probs=138.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCC-C
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIR-R 134 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~-~ 134 (426)
..||||+||+.+.+.+|+.||..||.|.+|.|+.||+||+|.+..+|+.||..|||.+| .|-.+.|+|+....... .
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l--~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKEL--CGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCcee--cceeeeeecccccccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999 68889999998754332 1
Q ss_pred CCCCC---CCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCC
Q 014331 135 PGGGS---SARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKL 211 (426)
Q Consensus 135 ~~~~~---~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~ 211 (426)
+.++. ............+.|+|.|+ ...+.|++|.++|.++|++....+..+++||+|.+.++|.+|+..|++..+
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~~~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDARRNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccc-hhhhhHHHHhhhhcccCCCchhhhhccccceeehhhhhhhhcchhccchhh
Confidence 11110 11222344566778899999 788889999999999999988888899999999999999999999999999
Q ss_pred CCceEEE
Q 014331 212 TDRVISV 218 (426)
Q Consensus 212 ~g~~l~v 218 (426)
.|+.|++
T Consensus 159 ~~~~l~~ 165 (216)
T KOG0106|consen 159 NGRRISV 165 (216)
T ss_pred cCceeee
Confidence 9999999
No 24
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.4e-22 Score=169.50 Aligned_cols=157 Identities=32% Similarity=0.560 Sum_probs=133.3
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
..++|||||||.++.+.+|++||-+||.|.+|.|+ .+||||+|+++.+|+.||..-||..+ +|..|.|+|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy--dg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY--DGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc--CcceEEEEeccC
Confidence 46899999999999999999999999999999994 67999999999999999999999999 899999999987
Q ss_pred cCCCCCC----------CCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-cCEEEEEecCHH
Q 014331 129 ERGIRRP----------GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-RNFAFVQYEVQE 197 (426)
Q Consensus 129 ~~~~~~~----------~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-~g~afV~f~~~~ 197 (426)
....... +++......++.......|.|.+| |...+|+||++++.+.|.|....+. -+.+.|+|...+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGL-p~SgSWQDLKDHmReaGdvCfadv~rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGL-PPSGSWQDLKDHMREAGDVCFADVQRDGVGVVEYLRKE 161 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecC-CCCCchHHHHHHHHhhCCeeeeeeecccceeeeeeehh
Confidence 6532111 111122233444555678999999 6777899999999999999999996 479999999999
Q ss_pred HHHHHHHHcCCCCCCC
Q 014331 198 DATRALDATNMSKLTD 213 (426)
Q Consensus 198 ~A~~A~~~l~g~~~~g 213 (426)
+.+-|+..|+...+.-
T Consensus 162 DMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFRS 177 (241)
T ss_pred hHHHHHHhhccccccC
Confidence 9999999999887764
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.6e-23 Score=194.17 Aligned_cols=150 Identities=25% Similarity=0.410 Sum_probs=133.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....+.||||.||.++.|++|.-||++.|+|-+++|+ +|||||.|.+.++|++||+.||+.+|- .|+.|.|
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGV 158 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEE
Confidence 3457899999999999999999999999999999983 899999999999999999999999997 8999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEEe---------cCEEEEEe
Q 014331 124 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR---------RNFAFVQY 193 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i~---------~g~afV~f 193 (426)
..+.. ++.|||+|| |.+.++++|.+.|.+.+ -|++|.|. +|||||+|
T Consensus 159 c~Sva----------------------n~RLFiG~I-PK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 159 CVSVA----------------------NCRLFIGNI-PKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred EEeee----------------------cceeEeccC-CccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEe
Confidence 98754 569999999 78888999999999998 57777772 68999999
Q ss_pred cCHHHHHHHHHHcCC--CCCCCceEEEEEeecCC
Q 014331 194 EVQEDATRALDATNM--SKLTDRVISVEYAVRDD 225 (426)
Q Consensus 194 ~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~~~ 225 (426)
.++..|..|..+|-. .++.|+.+.|+||.+..
T Consensus 216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~ 249 (506)
T KOG0117|consen 216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEE 249 (506)
T ss_pred ecchhHHHHHhhccCCceeecCCcceeeccCccc
Confidence 999999999888744 45679999999998763
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.1e-23 Score=181.72 Aligned_cols=153 Identities=23% Similarity=0.486 Sum_probs=137.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
+..++|.|--||.++|++||+.||...|+|++|+| +.||+||.|-+++||++||..|||..| ..+.|+|.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIKVS 116 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIKVS 116 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEEEE
Confidence 44678999999999999999999999999999999 479999999999999999999999999 79999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQ 196 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~ 196 (426)
|+.+.. .......|||.+| |..+++.+|+++|.+||.|.--+| .+|.+||.|...
T Consensus 117 yARPSs----------------~~Ik~aNLYvSGl-PktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 117 YARPSS----------------DSIKDANLYVSGL-PKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred eccCCh----------------hhhcccceEEecC-CccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 997654 3345568999999 889999999999999998876555 489999999999
Q ss_pred HHHHHHHHHcCCCCCCC--ceEEEEEeecC
Q 014331 197 EDATRALDATNMSKLTD--RVISVEYAVRD 224 (426)
Q Consensus 197 ~~A~~A~~~l~g~~~~g--~~l~v~~a~~~ 224 (426)
.+|+.||..|||..--| ..|.|+||...
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 99999999999998876 67999999764
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=200.75 Aligned_cols=160 Identities=26% Similarity=0.534 Sum_probs=140.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.++|||.||++.+|.++|..+|..+|.|+.|.|+ .|||||+|.++++|+.|++.|+|+.| +|+.|.|
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl--dGH~l~l 592 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL--DGHKLEL 592 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee--cCceEEE
Confidence 4459999999999999999999999999999883 49999999999999999999999999 9999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecC
Q 014331 124 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV 195 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~ 195 (426)
.++..... ... .+........+.|+|.|| |+..+-.+|+.+|..||.|..|.|| +|||||+|-+
T Consensus 593 k~S~~k~~---~~~----gK~~~~kk~~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 593 KISENKPA---STV----GKKKSKKKKGTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred EeccCccc---ccc----ccccccccccceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 99972221 111 122222333789999999 8999999999999999999999996 5799999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 196 QEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 196 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
..+|..|+++|.++.+.|+.|.++||...
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhccc
Confidence 99999999999999999999999999875
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1e-22 Score=187.98 Aligned_cols=162 Identities=18% Similarity=0.423 Sum_probs=138.2
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
+|.||||.|.+.+.|+.|+..|..||+|++|.|+ +|||||+|+-+|.|+.|++.|||..+ .|+.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccCC
Confidence 8999999999999999999999999999999993 89999999999999999999999999 5999999854
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHH
Q 014331 127 KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQED 198 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~ 198 (426)
..... ...............+.|||..+ ..+.+++||+..|+.||+|+.|.+. +||+||+|.+...
T Consensus 191 sNmpQ-----AQpiID~vqeeAk~fnRiYVaSv-HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 191 SNMPQ-----AQPIIDMVQEEAKKFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred CCCcc-----cchHHHHHHHHHHhhheEEeeec-CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 32221 00000111223455689999999 5678899999999999999999994 7899999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 199 ATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 199 A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
...||..||-+.++|..|.|..+...
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hHHHhhhcchhhcccceEecccccCC
Confidence 99999999999999999999876654
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=2.1e-20 Score=190.79 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=96.4
Q ss_pred eeeEEEEecCCchhHHhhhc-CCcceecCeecccccchhh----------hhccCCCccEEEcCCCCCCCHHHHHHHHhh
Q 014331 10 CHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIA----------AFEVAMMRPIFCGNFEYDARQSDLERLFRR 78 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 78 (426)
...++||.|...++++.++. +++..+.|..+.+...... .......++|||+||++++++++|+++|+.
T Consensus 148 skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~ 227 (612)
T TIGR01645 148 HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA 227 (612)
T ss_pred cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh
Confidence 34589999999999999985 6777777766654321100 011223579999999999999999999999
Q ss_pred cCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 79 YGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 79 ~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
||+|..|.| .+|||||+|.+.++|.+||+.|||..| .|+.|+|.++..
T Consensus 228 FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el--gGr~LrV~kAi~ 283 (612)
T TIGR01645 228 FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGKCVT 283 (612)
T ss_pred cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee--CCeEEEEEecCC
Confidence 999999998 378999999999999999999999999 799999999775
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.3e-21 Score=188.07 Aligned_cols=197 Identities=20% Similarity=0.292 Sum_probs=164.4
Q ss_pred eeeEEEEecCCchhHHhhhcCCc-ceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRR-LYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM- 87 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i- 87 (426)
+..++||.|+..+++..|+.... ..+.|..+...+.. .....|||.||++.+|..+|.++|+.||+|++|++
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~------rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~ 109 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ------RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVA 109 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc------cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEE
Confidence 45689999999999999986443 34455555444322 12223999999999999999999999999999999
Q ss_pred -----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCC
Q 014331 88 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 162 (426)
Q Consensus 88 -----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~ 162 (426)
++|| ||+|+++++|.+||+.|||..+ .|+.|.|...........+.. ........++|.|+ +.
T Consensus 110 ~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll--~~kki~vg~~~~~~er~~~~~--------~~~~~~t~v~vk~~-~~ 177 (369)
T KOG0123|consen 110 TDENGSKGY-FVQFESEESAKKAIEKLNGMLL--NGKKIYVGLFERKEEREAPLG--------EYKKRFTNVYVKNL-EE 177 (369)
T ss_pred EcCCCceee-EEEeCCHHHHHHHHHHhcCccc--CCCeeEEeeccchhhhccccc--------chhhhhhhhheecc-cc
Confidence 4899 9999999999999999999999 899999998877653322222 13455678999999 78
Q ss_pred CCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 163 HTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 163 ~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
.++++.|.++|..||.|..+.++ ++|+||.|++.++|..|++.|++..+.+..+-|..+..+
T Consensus 178 ~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 178 DSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred ccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 89999999999999999999884 679999999999999999999999999999999988773
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=5.1e-21 Score=186.27 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=161.0
Q ss_pred eeEEEEecCCchhHHhhhcCCcceecCeecccccchhh-------------hhccCCCccEEEcCCCCCCCHHHHHHHHh
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIA-------------AFEVAMMRPIFCGNFEYDARQSDLERLFR 77 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 77 (426)
.-++||.|-..+-+..++.+.+..+.|.++..+.-... .....++..||||||..++|+++|..+|+
T Consensus 221 kgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ife 300 (549)
T KOG0147|consen 221 KGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFE 300 (549)
T ss_pred cceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhcc
Confidence 35899999999999999999999999988876542110 01123355599999999999999999999
Q ss_pred hcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCC--------------
Q 014331 78 RYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRP-------------- 135 (426)
Q Consensus 78 ~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~-------------- 135 (426)
.||.|..|.+ .+||+||+|.+.++|.+|++.|||.+| .|+.|+|............
T Consensus 301 pfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~g 378 (549)
T KOG0147|consen 301 PFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQG 378 (549)
T ss_pred CcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEeeeecccccccccccccchhhccc
Confidence 9999999988 389999999999999999999999888 8999999765443321100
Q ss_pred ----CCC----------C-------------------------CC---CCC-------CCCCCCCcEEEEecC-CCCCCC
Q 014331 136 ----GGG----------S-------------------------SA---RRP-------STNTRPSKTLFVINF-DPYHTR 165 (426)
Q Consensus 136 ----~~~----------~-------------------------~~---~~~-------~~~~~~~~~l~v~nl-~p~~~~ 165 (426)
.++ . .. ... +....++.++.+.|+ +|...|
T Consensus 379 l~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstet 458 (549)
T KOG0147|consen 379 LSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTET 458 (549)
T ss_pred cccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCccccc
Confidence 000 0 00 000 011145566777775 222222
Q ss_pred --------HHHHHHhhccCCceEEEEEec---CEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 166 --------TRDLERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 166 --------~~~L~~~F~~~G~v~~v~i~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
.+||.+.+.+||+|.+|.+-+ |+.||.|.+.++|..|+.+|||.||.|+.|++.|-..
T Consensus 459 e~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 459 EPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred CcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 367889999999999999953 7999999999999999999999999999999998764
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.6e-20 Score=177.19 Aligned_cols=214 Identities=21% Similarity=0.348 Sum_probs=157.4
Q ss_pred eeeeEEEEecCCchhHHhhhc-C-CcceecCeecccccchhhhhcc---CCCccEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014331 9 QCHYLLIVYSHSVWPVQKKYL-P-RRLYVLGFRRSHSQLSIAAFEV---AMMRPIFCGNFEYDARQSDLERLFRRYGKVD 83 (426)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~ 83 (426)
+...|+||.|...+++..++. + +...+.|.... .++..+..+. ....+||||-|++.+||.||+++|.+||.|+
T Consensus 74 ~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p-vqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie 152 (510)
T KOG0144|consen 74 QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP-VQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIE 152 (510)
T ss_pred cccceEEEEeccHHHHHHHHHHhhcccccCCCCcc-eeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccc
Confidence 344577777777665554443 2 22223333222 2222222222 2378999999999999999999999999999
Q ss_pred EEEE-------eCCEEEEEEcChHhHHHHHHhcCCc-eecCCCcEEEEEEeeccCCCCC-------------------C-
Q 014331 84 RVDM-------KSGFAFIYMDDERDAEDAIRGLDRT-EFGRKGRRLRVEWTKHERGIRR-------------------P- 135 (426)
Q Consensus 84 ~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~-~~~~~g~~i~V~~a~~~~~~~~-------------------~- 135 (426)
+|.| ++|||||+|.+.+.|..||+.|||. .+.-+..+|.|.|+..++.... +
T Consensus 153 d~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~ 232 (510)
T KOG0144|consen 153 DCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQ 232 (510)
T ss_pred hhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCcc
Confidence 9998 4899999999999999999999995 3322667999999988763300 0
Q ss_pred ------------------------CC-------------------------------------C-----------CCC--
Q 014331 136 ------------------------GG-------------------------------------G-----------SSA-- 141 (426)
Q Consensus 136 ------------------------~~-------------------------------------~-----------~~~-- 141 (426)
.+ + ...
T Consensus 233 n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~ 312 (510)
T KOG0144|consen 233 NLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSP 312 (510)
T ss_pred chhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCC
Confidence 00 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 014331 142 -------------------------------------------------------------------------------- 141 (426)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (426)
T Consensus 313 ~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q 392 (510)
T KOG0144|consen 313 QSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQ 392 (510)
T ss_pred ccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhh
Confidence
Q ss_pred ----------------------CCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEE
Q 014331 142 ----------------------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFV 191 (426)
Q Consensus 142 ----------------------~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV 191 (426)
.....+.+....|||.+| |...-+.+|...|..||.|+..++. +.|+||
T Consensus 393 ~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhl-Pqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfv 471 (510)
T KOG0144|consen 393 SANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHL-PQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFV 471 (510)
T ss_pred hhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeC-chhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcc
Confidence 000111344578999999 7888899999999999999988773 569999
Q ss_pred EecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 192 QYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 192 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
.|++..+|..||..|||..++.++|+|......
T Consensus 472 Syen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 472 SYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999999999999999988764
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.3e-20 Score=181.09 Aligned_cols=143 Identities=24% Similarity=0.493 Sum_probs=131.0
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
..|||| +++|+.+|.++|+.+|+|++|+| +.|||||.|.++++|++||++||...| +|++|.|.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhccCC
Confidence 469999 99999999999999999999998 579999999999999999999999999 89999999996544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHH
Q 014331 131 GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALD 204 (426)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~ 204 (426)
..|||.|| +..++..+|.++|+.||+|+.|.+. +|| ||+|++.++|.+|++
T Consensus 77 ---------------------~~~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 77 ---------------------SLVFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred ---------------------ceeeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHH
Confidence 11999999 5778899999999999999999994 679 999999999999999
Q ss_pred HcCCCCCCCceEEEEEeecCCC
Q 014331 205 ATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 205 ~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
.|||..+.|+.|.|.....+..
T Consensus 134 ~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 134 KLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred HhcCcccCCCeeEEeeccchhh
Confidence 9999999999999998876543
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.83 E-value=5.6e-19 Score=151.81 Aligned_cols=79 Identities=37% Similarity=0.516 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
+......+|.|.|| .+.|+.++|..+|++||.|.+|.|+ +|||||-|.+..+|++|+++|+|.+|+|+.|.
T Consensus 8 Pdv~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCcccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44556789999999 8999999999999999999999996 68999999999999999999999999999999
Q ss_pred EEEeecCC
Q 014331 218 VEYAVRDD 225 (426)
Q Consensus 218 v~~a~~~~ 225 (426)
|++|+-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99998643
No 35
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=6.1e-19 Score=148.05 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE---ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
..+.|||+|| +..+++.||+.+|..||.|..|+| +.|||||||++..||++|+..|+|..|+|..|.|++......
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 3689999999 788999999999999999999999 579999999999999999999999999999999999987654
Q ss_pred C
Q 014331 227 D 227 (426)
Q Consensus 227 ~ 227 (426)
.
T Consensus 88 ~ 88 (195)
T KOG0107|consen 88 G 88 (195)
T ss_pred c
Confidence 3
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=1.1e-18 Score=153.21 Aligned_cols=167 Identities=24% Similarity=0.469 Sum_probs=137.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEE-----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLER----LFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~----~F~~~G~V~~v~i-----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.++.||||.||+..+..++|+. ||++||+|.+|.. .+|-|||.|.+.+.|-.|+.+|+|..| -|+.++|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~mri 84 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPMRI 84 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcc--cCchhhe
Confidence 3445999999999999999888 9999999999988 389999999999999999999999999 7999999
Q ss_pred EEeeccCCCCCCCCCC----------------------C--------CCCC----CCCCCCCcEEEEecCCCCCCCHHHH
Q 014331 124 EWTKHERGIRRPGGGS----------------------S--------ARRP----STNTRPSKTLFVINFDPYHTRTRDL 169 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~----------------------~--------~~~~----~~~~~~~~~l~v~nl~p~~~~~~~L 169 (426)
+||+.+........+. . .... ....+++..||+.|| |..++.+.|
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni-P~es~~e~l 163 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI-PSESESEML 163 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecC-CcchhHHHH
Confidence 9998765331110000 0 0000 233677889999999 788889999
Q ss_pred HHhhccCCceEEEEE---ecCEEEEEecCHHHHHHHHHHcCCCCCC-CceEEEEEee
Q 014331 170 ERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAV 222 (426)
Q Consensus 170 ~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~ 222 (426)
..+|.+|.....|.+ ..+.|||+|.+...|..|...++|..+. ...+.|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999987777777 4789999999999999999999999887 8888888774
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.80 E-value=4.9e-20 Score=179.45 Aligned_cols=168 Identities=29% Similarity=0.453 Sum_probs=142.4
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
++...+|||+--|+..+++.+|++||+.+|+|.+|.| ++|.|||+|.+.+.+..|| .|.|..+ .|.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCceeE
Confidence 3445789999999999999999999999999999998 4899999999999999999 9999999 799999
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEec
Q 014331 123 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYE 194 (426)
Q Consensus 123 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~ 194 (426)
|+.....+.... ....+........+...|||+|| ..++++++|+.+|+.||.|..|.++ +||+||+|.
T Consensus 252 vq~sEaeknr~a--~~s~a~~~k~~~~p~~rl~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 252 VQLSEAEKNRAA--NASPALQGKGFTGPMRRLYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred ecccHHHHHHHH--hccccccccccccchhhhhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 998876654311 11111222333444555999999 7899999999999999999999985 689999999
Q ss_pred CHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 195 VQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 195 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
+.++|.+|++.|||++|.|+.|.|......
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999999886654
No 38
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=4e-18 Score=143.15 Aligned_cols=76 Identities=38% Similarity=0.631 Sum_probs=71.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
..+++||||||+..+|+.||+.+|..||+|..|+| +.|||||||+++.+|+.|+..|||..| +|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccc--cCceEEEEeecCC
Confidence 34789999999999999999999999999999999 589999999999999999999999999 8999999999776
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 5
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=4.6e-19 Score=157.80 Aligned_cols=172 Identities=22% Similarity=0.431 Sum_probs=139.6
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCce-ecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTE-FGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~-~~~~g~~i~V~~ 125 (426)
..++||||-|...-.|||++.||..||.|.+|.+ +||+|||+|.+..+|..||..|+|.. +.-....|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 4689999999999999999999999999999998 49999999999999999999999953 211456799999
Q ss_pred eeccCCC--------------CC---------------------------------------------------------
Q 014331 126 TKHERGI--------------RR--------------------------------------------------------- 134 (426)
Q Consensus 126 a~~~~~~--------------~~--------------------------------------------------------- 134 (426)
+...+.. ..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 8776532 00
Q ss_pred -----------C--------------------------CCCC-------CC-----------------------------
Q 014331 135 -----------P--------------------------GGGS-------SA----------------------------- 141 (426)
Q Consensus 135 -----------~--------------------------~~~~-------~~----------------------------- 141 (426)
+ .+.. ..
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0 0000 00
Q ss_pred ------------------CCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecC
Q 014331 142 ------------------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV 195 (426)
Q Consensus 142 ------------------~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~ 195 (426)
.......+..++|||-.| |....+.+|.++|-.||.|+..++. |.|+||.|.+
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 000112456799999999 7888899999999999999988773 6799999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 196 QEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 196 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
...|+.||..|||+.|+-++|+|.+.++++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999877643
No 40
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.74 E-value=1.6e-18 Score=161.77 Aligned_cols=160 Identities=15% Similarity=0.116 Sum_probs=113.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
..|.|.||.+.+|.++|+.||..+|+|.++.|. ...|||.|.+...+..|.+..|.++| ++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv---draliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV---DRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee---eeeEEEE
Confidence 479999999999999999999999999999882 56899999999999999966666666 6665554
Q ss_pred -EeeccCCC---------------CCCCCCC--------------CCCCCCCCC----------CCCcEEEEecCCCCCC
Q 014331 125 -WTKHERGI---------------RRPGGGS--------------SARRPSTNT----------RPSKTLFVINFDPYHT 164 (426)
Q Consensus 125 -~a~~~~~~---------------~~~~~~~--------------~~~~~~~~~----------~~~~~l~v~nl~p~~~ 164 (426)
+....... ..+.++. .+....+.. ....+|+|++| +..+
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl-~~~~ 163 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSL-ISAA 163 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcc-hhhh
Confidence 33322211 0000000 000000000 11256889999 6677
Q ss_pred CHHHHHHhhccCCceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 165 RTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 165 ~~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
...++.+.|..+|+|.+..+. ..+|.|+|........|+. ++|..+.-....+.+
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAI 222 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhh
Confidence 789999999999999998885 3488899999999999997 577777644444443
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.74 E-value=8.5e-18 Score=158.70 Aligned_cols=158 Identities=19% Similarity=0.427 Sum_probs=134.2
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
..++||||+|++.+|++.|.+.|.+||+|.+|.+. +||+||+|++++.+..+| ......| +|+.|.++-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-ccccccc--CCcccccee
Confidence 56899999999999999999999999999999985 599999999999999988 4444555 799999988
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 197 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~ 197 (426)
+........... ......|||++| +..+++++|++.|.+||.|..+.++ ++|+||.|.+.+
T Consensus 82 av~r~~~~~~~~----------~~~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 82 AVSREDQTKVGR----------HLRTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred ccCccccccccc----------ccceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc
Confidence 876553222211 226789999999 7899999999999999999888774 789999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 198 DATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 198 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
.+.+++. +.-..|+|+.+.|..|.++..
T Consensus 151 sVdkv~~-~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 151 SVDKVTL-QKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ccceecc-cceeeecCceeeEeeccchhh
Confidence 9999886 678899999999999998754
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-17 Score=149.22 Aligned_cols=132 Identities=21% Similarity=0.442 Sum_probs=109.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI 132 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~ 132 (426)
...+|||||||+..+||+-|..||.+.|.|..++|... .|+|.|+....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------e~~v~wa~~p~-- 52 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------ELKVNWATAPG-- 52 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------hhccccccCcc--
Confidence 45789999999999999999999999999998776422 34566665442
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHH
Q 014331 133 RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALD 204 (426)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~ 204 (426)
.+..+.......|||+.| ...++.++|++.|.+||+|.+++|. +||+||.|.+.++|+.||+
T Consensus 53 ---------nQsk~t~~~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~ 122 (321)
T KOG0148|consen 53 ---------NQSKPTSNQHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQ 122 (321)
T ss_pred ---------cCCCCccccceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHH
Confidence 112222333668999999 5677799999999999999999884 7899999999999999999
Q ss_pred HcCCCCCCCceEEEEEeecCC
Q 014331 205 ATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 205 ~l~g~~~~g~~l~v~~a~~~~ 225 (426)
.|||.+|+++.|...||..+.
T Consensus 123 ~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 123 QMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HhCCeeeccceeeccccccCc
Confidence 999999999999999998875
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.72 E-value=5.1e-16 Score=133.67 Aligned_cols=78 Identities=38% Similarity=0.700 Sum_probs=72.5
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
+.+.+.+|.|-||.+.+|.++|..+|++||.|.+|.|+ +|||||-|.+..+|+.|+++|+|.+| +|+.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 34678899999999999999999999999999999993 89999999999999999999999999 999999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|++|....
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99987543
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.70 E-value=5e-16 Score=143.49 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=132.9
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEE-------eCCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVD--------RVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--------~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
....++.|||.|||.++|.+++.++|++||.|. .|+| .+|=|+|.|...++++.||+.|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~- 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL- 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc-
Confidence 345577899999999999999999999999886 2444 289999999999999999999999999
Q ss_pred CCCcEEEEEEeeccCCCCCCCCCC---------------------CC-CCCCCCCCCCcEEEEecCCC---CCCC-----
Q 014331 116 RKGRRLRVEWTKHERGIRRPGGGS---------------------SA-RRPSTNTRPSKTLFVINFDP---YHTR----- 165 (426)
Q Consensus 116 ~~g~~i~V~~a~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~l~v~nl~p---~~~~----- 165 (426)
.|+.|+|+.|+-........... .. ..........++|.|.||-. +..+
T Consensus 209 -rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 -RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred -cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 79999999886654221111100 00 01122344567899988711 1112
Q ss_pred --HHHHHHhhccCCceEEEEE----ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 166 --TRDLERHFEPYGKIISVRI----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 166 --~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
+++|.+.+.+||.|..|.| |.|.+.|.|.+.++|..||+.|+|.+|+|+.|+..+-..
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 3667788999999999988 589999999999999999999999999999998877543
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=2.5e-16 Score=137.09 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=121.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcChHhHHHHHHhcCCceec-CCCcEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFG-RKGRRL 121 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~lng~~~~-~~g~~i 121 (426)
....+||||.+||.++...||..||..|--.+.+.|+ +.+|||.|.+..+|.+|+.+|||+.|. ..+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3447899999999999999999999998666665552 469999999999999999999998884 267899
Q ss_pred EEEEeeccCCCCCCCCCC-----------------------------------------CCC------------------
Q 014331 122 RVEWTKHERGIRRPGGGS-----------------------------------------SAR------------------ 142 (426)
Q Consensus 122 ~V~~a~~~~~~~~~~~~~-----------------------------------------~~~------------------ 142 (426)
+|++++.....+...+.. .+.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 999987765332111000 000
Q ss_pred -----------CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cC--EEEEEecCHHHHHHHHHHcC
Q 014331 143 -----------RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RN--FAFVQYEVQEDATRALDATN 207 (426)
Q Consensus 143 -----------~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g--~afV~f~~~~~A~~A~~~l~ 207 (426)
..........+|||.|| ...++|++|+.+|+.|....-+.|. .| .||++|++.+.|..|+..|+
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 00111233468999999 5778899999999999866655553 33 89999999999999999999
Q ss_pred CCCCC
Q 014331 208 MSKLT 212 (426)
Q Consensus 208 g~~~~ 212 (426)
|..|.
T Consensus 270 g~~~s 274 (284)
T KOG1457|consen 270 GNLLS 274 (284)
T ss_pred cceec
Confidence 87663
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=158.20 Aligned_cols=165 Identities=26% Similarity=0.410 Sum_probs=134.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-CC-EEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-SG-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI 132 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-~g-~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~ 132 (426)
.+.|+|+|||..+..++|..+|..||+|..|.|+ -| .|+|+|.++.+|.+|+..|+..-| ...+|.+.|+....-.
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~--k~~plyle~aP~dvf~ 462 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLEWAPEDVFT 462 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhh--ccCccccccChhhhcc
Confidence 5789999999999999999999999999999885 33 499999999999999999999988 7899999987544322
Q ss_pred CCCCC-----CC-CC------------------CCC----------CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCc
Q 014331 133 RRPGG-----GS-SA------------------RRP----------STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK 178 (426)
Q Consensus 133 ~~~~~-----~~-~~------------------~~~----------~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~ 178 (426)
..+.. .. .. ... .......++|||.|| .+.++.++|..+|..+|.
T Consensus 463 ~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNl-nf~Tt~e~l~~~F~k~G~ 541 (725)
T KOG0110|consen 463 EDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNL-NFDTTLEDLEDLFSKQGT 541 (725)
T ss_pred CCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcC-CcccchhHHHHHHHhcCe
Confidence 00000 00 00 000 001111233999999 799999999999999999
Q ss_pred eEEEEEe-----------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 179 IISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 179 v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
|..+.|. .|||||+|.+.++|+.|+..|+|+.++|+.|.|.++.
T Consensus 542 VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 542 VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999884 2899999999999999999999999999999999998
No 47
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.2e-16 Score=133.68 Aligned_cols=76 Identities=28% Similarity=0.536 Sum_probs=70.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+||++.+|+++|+++|++||+|.+|.|. +|||||+|.+.++|++||+.||+..| +|+.|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V~ 109 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRVN 109 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 447799999999999999999999999999999983 79999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 997655
No 48
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=2.6e-16 Score=153.02 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=93.9
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 88 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-- 88 (426)
-++||+|.+.++++.++. ++...+.+..+.+.... ........++|||+|||..+|+++|+++|++||+|+.|.|.
T Consensus 150 GyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~-p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d 228 (346)
T TIGR01659 150 GYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR-PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRD 228 (346)
T ss_pred cEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc-ccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeec
Confidence 479999999999999884 66666666555543221 11122346789999999999999999999999999999883
Q ss_pred ------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 89 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 89 ------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
++||||+|.+.++|++||+.||++.|...++.|.|.|+....
T Consensus 229 ~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 229 KLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 589999999999999999999999883233789999987543
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.5e-15 Score=139.39 Aligned_cols=118 Identities=15% Similarity=0.248 Sum_probs=94.3
Q ss_pred eeEEEEecCCchhHHhhhcCCc-ceecCeeccccc----------chhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhc
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRR-LYVLGFRRSHSQ----------LSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRY 79 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 79 (426)
..++||.+.-.+++|.+++..+ .++.|..+++.. +.....+......|||..+.++++++||+.+|+.|
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF 234 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF 234 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh
Confidence 3589999999999888887544 444444444322 12223344567899999999999999999999999
Q ss_pred CCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 80 GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 80 G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
|+|+.|.| .+||+||+|.+..+-..||..||-.+| .|.-|+|..+....
T Consensus 235 G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL--GGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 235 GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL--GGQYLRVGKCVTPP 291 (544)
T ss_pred cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc--ccceEecccccCCC
Confidence 99999999 489999999999999999999999999 59999997765443
No 50
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=9.8e-16 Score=151.58 Aligned_cols=211 Identities=17% Similarity=0.236 Sum_probs=155.6
Q ss_pred eeEEEEecCCchhHHhhhcCCcceecCeecccccc-------h---------------hhhhccCCCccEEEcCCCCCCC
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQL-------S---------------IAAFEVAMMRPIFCGNFEYDAR 68 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------------~~~~~~~~~~~l~V~nLp~~~t 68 (426)
..++++.|.+..++..++.+......|........ . ...........|||++||..++
T Consensus 223 ~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~ 302 (500)
T KOG0120|consen 223 KNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLT 302 (500)
T ss_pred ccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccC
Confidence 35788889998888888888777666655443220 0 0011122367899999999999
Q ss_pred HHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCC--
Q 014331 69 QSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGG-- 138 (426)
Q Consensus 69 e~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~-- 138 (426)
++++.++...||.+....+ ++||||.+|.++..+..|+..|||+.+ .+..|.|+.+............
T Consensus 303 ~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l--gd~~lvvq~A~~g~~~~~~~~~~~ 380 (500)
T KOG0120|consen 303 EDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL--GDKKLVVQRAIVGASNANVNFNIS 380 (500)
T ss_pred HHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh--cCceeEeehhhccchhccccCCcc
Confidence 9999999999999987766 489999999999999999999999999 4899999988765533222221
Q ss_pred ---CCC---CCCCCCCCCCcEEEEecCC-CCCC-CH-------HHHHHhhccCCceEEEEEe-----------cCEEEEE
Q 014331 139 ---SSA---RRPSTNTRPSKTLFVINFD-PYHT-RT-------RDLERHFEPYGKIISVRIR-----------RNFAFVQ 192 (426)
Q Consensus 139 ---~~~---~~~~~~~~~~~~l~v~nl~-p~~~-~~-------~~L~~~F~~~G~v~~v~i~-----------~g~afV~ 192 (426)
... ........+...|.+.|+- +... .+ ++|+..|.+||.|..|.++ .|..||+
T Consensus 381 ~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVe 460 (500)
T KOG0120|consen 381 QSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVE 460 (500)
T ss_pred ccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEE
Confidence 000 1113334555556655541 1100 11 4567788899999999996 3689999
Q ss_pred ecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 193 YEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 193 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
|.+.+++++|..+|+|.+|.|++|...|-..
T Consensus 461 fas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 461 FADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred ecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 9999999999999999999999999887543
No 51
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=4.7e-16 Score=123.93 Aligned_cols=76 Identities=26% Similarity=0.544 Sum_probs=71.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
..++|||||||+..+||++|.+||+.+|+|..|.| +.|||||+|...++|+.||..++|+.| +.++|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceeee
Confidence 45899999999999999999999999999999999 479999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|-..-.
T Consensus 112 ~D~GF~ 117 (153)
T KOG0121|consen 112 WDAGFV 117 (153)
T ss_pred ccccch
Confidence 976544
No 52
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.59 E-value=1.9e-14 Score=135.64 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=134.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-e--CCE-EEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-K--SGF-AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 131 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-~--~g~-aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~ 131 (426)
-.++|+|+-+-+|.|-|.++|+.||.|..|.- . .+| |+|+|.+.+.|..|..+|+|..|....+.|+|.|++-...
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 46789999999999999999999999987765 2 344 8999999999999999999998875556788887654321
Q ss_pred C-----------CC---CCC----------------------CCCCCC--------C-CCCCC--CCcEEEEecCCCCCC
Q 014331 132 I-----------RR---PGG----------------------GSSARR--------P-STNTR--PSKTLFVINFDPYHT 164 (426)
Q Consensus 132 ~-----------~~---~~~----------------------~~~~~~--------~-~~~~~--~~~~l~v~nl~p~~~ 164 (426)
. .. +.+ ...+.. . ..... .+..|.|.||.++.+
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~V 310 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAV 310 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhcc
Confidence 0 00 011 000000 0 11111 257899999999999
Q ss_pred CHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 165 RTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 165 ~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
|.+.|..+|.-||.|..|.|. +..|.|+|.+...|+-|+..|+|..|.|+.|+|.+++-..
T Consensus 311 T~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 311 TPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred chhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 999999999999999999994 5699999999999999999999999999999999988653
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.59 E-value=4.3e-14 Score=133.20 Aligned_cols=166 Identities=27% Similarity=0.346 Sum_probs=135.3
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 55 MRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 55 ~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
+..|.|.||.+ .+|++-|..||+-||.|..|+| ++.-|+|+|.+...|+.|++.|+|..| .|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l--~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKL--YGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhccee--cCceEEEeeccCcc
Confidence 57899999975 6899999999999999999999 477999999999999999999999999 79999999998765
Q ss_pred CCCCCCCCCC------------------CCCC-CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--e--cC
Q 014331 131 GIRRPGGGSS------------------ARRP-STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--R--RN 187 (426)
Q Consensus 131 ~~~~~~~~~~------------------~~~~-~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--~--~g 187 (426)
......+... +.+. ....+++.+|++.|+ |..++|++|+.+|..-|-++.... + +.
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~k 453 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRK 453 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcc
Confidence 3221111100 0111 122467789999999 788889999999999986655444 2 46
Q ss_pred EEEEEecCHHHHHHHHHHcCCCCCCC-ceEEEEEeec
Q 014331 188 FAFVQYEVQEDATRALDATNMSKLTD-RVISVEYAVR 223 (426)
Q Consensus 188 ~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~ 223 (426)
+|++.+.+.++|..|+..|+...+++ ..|.|.|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999999884 5999999875
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=7.6e-15 Score=109.25 Aligned_cols=63 Identities=30% Similarity=0.745 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 58 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
|||+|||.++|+++|.++|++||.|..+.|. +++|||+|.+.++|++|++.|||..| .|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~--~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI--NGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE--CccCcC
Confidence 7999999999999999999999999999883 68999999999999999999999999 798875
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=5.1e-14 Score=120.12 Aligned_cols=77 Identities=25% Similarity=0.410 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
.....+|||+|| +..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++|++.||+..|+|+.|.|+
T Consensus 31 ~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455679999999 7899999999999999999999885 6899999999999999999999999999999999
Q ss_pred EeecCC
Q 014331 220 YAVRDD 225 (426)
Q Consensus 220 ~a~~~~ 225 (426)
++..+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 998654
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.56 E-value=3.2e-13 Score=125.96 Aligned_cols=171 Identities=20% Similarity=0.216 Sum_probs=137.8
Q ss_pred CCccEEEcCCC--CCCCHHHHHHHHhhcCCeeEEEEe--CC-EEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 54 MMRPIFCGNFE--YDARQSDLERLFRRYGKVDRVDMK--SG-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 54 ~~~~l~V~nLp--~~~te~~L~~~F~~~G~V~~v~i~--~g-~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
.+..|.+.=|. +.+|.+-|.++....|+|..|.|. .| .|.|||++.+.|++|.++|||.+|...-.+|+|+||++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 35556655554 578999999999999999999884 23 69999999999999999999999985667899999988
Q ss_pred cCCCC-------------------CCCC--------------------C------C---------------------CCC
Q 014331 129 ERGIR-------------------RPGG--------------------G------S---------------------SAR 142 (426)
Q Consensus 129 ~~~~~-------------------~~~~--------------------~------~---------------------~~~ 142 (426)
.+... .++. + . ...
T Consensus 199 ~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~ 278 (494)
T KOG1456|consen 199 TRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGY 278 (494)
T ss_pred ceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCC
Confidence 75210 0000 0 0 000
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 143 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 143 ~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
.......+...++|-+|+...++.+.|..+|..||.|+.|.++ .|.|+|++.+..+.+.|+..||+..+.|.+|.|.
T Consensus 279 a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 279 ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 0113345567899999988889999999999999999999886 5799999999999999999999999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
++++.
T Consensus 359 ~SkQ~ 363 (494)
T KOG1456|consen 359 VSKQN 363 (494)
T ss_pred ecccc
Confidence 99875
No 57
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.53 E-value=2.4e-13 Score=129.02 Aligned_cols=165 Identities=30% Similarity=0.475 Sum_probs=130.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFR-RYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.+.+||+|||+++...+|++||. +.|+|+.|.| .+|+|.|||+++|.+++|++.||...+ .|++|.|+--
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV--NGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceEEEecc
Confidence 56699999999999999999997 5899999998 489999999999999999999999999 8999999654
Q ss_pred eccCCC--------------------------CCCC--CCC-------------------------------------C-
Q 014331 127 KHERGI--------------------------RRPG--GGS-------------------------------------S- 140 (426)
Q Consensus 127 ~~~~~~--------------------------~~~~--~~~-------------------------------------~- 140 (426)
...... .... ++. .
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 331100 0000 000 0
Q ss_pred --CC-CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCC
Q 014331 141 --AR-RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSK 210 (426)
Q Consensus 141 --~~-~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~ 210 (426)
.. ......+....+||.|| .+.+....|++.|.-.|.|..|.+. +|+|.|+|..+-+|..||..|++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl-~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANL-DYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeecc-ccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 00 00112344578999999 6999999999999999999988872 6899999999999999999999877
Q ss_pred CCCceEEEEEee
Q 014331 211 LTDRVISVEYAV 222 (426)
Q Consensus 211 ~~g~~l~v~~a~ 222 (426)
+..+..++....
T Consensus 281 ~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 281 LFDRRMTVRLDR 292 (608)
T ss_pred Cccccceeeccc
Confidence 777777777643
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=3.2e-14 Score=129.82 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=67.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
.++|||+||++.+|+++|+++|+.||+|.+|.| .+|||||+|.++++|+.|| .|||..| .|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEeccCC
Confidence 579999999999999999999999999999999 3799999999999999999 6999999 7999999998654
No 59
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.4e-13 Score=125.09 Aligned_cols=75 Identities=31% Similarity=0.642 Sum_probs=70.1
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
.+.+||||+-|+++++|..|+..|+.||+|+.|.| ++|||||+|+++.+...|.+..+|..| +|+.|.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I--dgrri~VD 176 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI--DGRRILVD 176 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee--cCcEEEEE
Confidence 55899999999999999999999999999999998 489999999999999999999999999 99999999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
+-...
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 86543
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=7e-14 Score=107.44 Aligned_cols=77 Identities=23% Similarity=0.414 Sum_probs=70.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
++.+..|||.|||+.+|.+++.+||.+||.|..|.| .+|.|||.|++..+|.+|++.|+|..+ +++.|.|-+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccccc--CCceEEEEec
Confidence 345788999999999999999999999999999999 389999999999999999999999999 8999999887
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6543
No 61
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.50 E-value=3.8e-13 Score=130.11 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=121.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
...|.+.+||+.+|++||.++|+.|+ |+++.+. .|-|||+|.+++++++|| +.+-..+ ..+-|.|..+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~m--g~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESM--GHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHh--CCceEEEEccCC
Confidence 45688999999999999999999995 7888874 689999999999999999 7777777 467788877654
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE-EEE-------ecCEEEEEecCHHHHH
Q 014331 129 ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRI-------RRNFAFVQYEVQEDAT 200 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~A~ 200 (426)
......- .............|-+.+| |+.|+++||.+||+..-.|.. |.+ +.|-|||+|++.+.|+
T Consensus 86 ~e~d~~~-----~~~g~~s~~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 86 AEADWVM-----RPGGPNSSANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccccccc-----cCCCCCCCCCCceEEecCC-CccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 4311000 0001111245678999999 899999999999997765554 323 3679999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEEeec
Q 014331 201 RALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 201 ~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
+|+.. |...|+-+-|+|-.+..
T Consensus 160 ~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 160 IALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHHH-HHHhhccceEEeehhHH
Confidence 99974 66777888888876543
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.50 E-value=6.5e-14 Score=126.73 Aligned_cols=120 Identities=24% Similarity=0.382 Sum_probs=100.3
Q ss_pred eeeeeee---EEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCC
Q 014331 6 SVYQCHY---LLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGK 81 (426)
Q Consensus 6 s~~~~~~---~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 81 (426)
+|..|.. +.||...+..+...++. +++.+++|+.++++.-+ ......++|+||||.+.+|.+||+..|++||+
T Consensus 28 kVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk---sKsk~stkl~vgNis~tctn~ElRa~fe~ygp 104 (346)
T KOG0109|consen 28 KVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK---SKSKASTKLHVGNISPTCTNQELRAKFEKYGP 104 (346)
T ss_pred ceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEecc---ccCCCccccccCCCCccccCHHHhhhhcccCC
Confidence 3455664 46677766666666665 78888888877765422 22456789999999999999999999999999
Q ss_pred eeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 82 VDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 82 V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
|.+|+|-++|+||.|.-.++|..||..|||.+| +|+.|+|+++...-
T Consensus 105 viecdivkdy~fvh~d~~eda~~air~l~~~~~--~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 105 VIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEF--QGKRMHVQLSTSRL 151 (346)
T ss_pred ceeeeeecceeEEEEeeccchHHHHhccccccc--ccceeeeeeecccc
Confidence 999999999999999999999999999999999 89999999987654
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=2.3e-13 Score=128.44 Aligned_cols=128 Identities=31% Similarity=0.554 Sum_probs=102.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..+|||+|||..+|+++|.++|..||.|..|.| .+|||||+|.+.++|..|++.|+|..| .|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 599999999999999999999999999988888 379999999999999999999999999 8999999997
Q ss_pred ec--cCCCCCCC--C----CCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe
Q 014331 127 KH--ERGIRRPG--G----GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 185 (426)
Q Consensus 127 ~~--~~~~~~~~--~----~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~ 185 (426)
.. ........ . ................+++.++ +..++..++..+|..+|.+..+.+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNL-PLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeecccc-ccccchhHHHHhccccccceeeecc
Confidence 53 11111110 0 0011222344556778999999 7888899999999999999777774
No 64
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.9e-12 Score=115.13 Aligned_cols=77 Identities=34% Similarity=0.548 Sum_probs=71.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+.+||||+-| ++.++|..|+..|+.||.|+.|.|. +|||||+|++..+...|.+..+|.+|+|+.|.|
T Consensus 97 ~gDPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 3477899999999 8999999999999999999999983 789999999999999999999999999999999
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
.+-...
T Consensus 176 DvERgR 181 (335)
T KOG0113|consen 176 DVERGR 181 (335)
T ss_pred Eecccc
Confidence 997654
No 65
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=8.5e-14 Score=112.05 Aligned_cols=74 Identities=23% Similarity=0.503 Sum_probs=69.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
...|||.++.+.+||++|.+.|..||+|++|.|. +|||+|+|++.++|++||.+|||..| .|++|.|.|+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEEEE
Confidence 5789999999999999999999999999999983 89999999999999999999999999 8999999998
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
-...
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 6554
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=3.8e-13 Score=120.87 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=66.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
..+|||+||++.+|+++|+++|+.||+|.+|.|. .+||||+|.++++|+.|| .|||..| .++.|.|......
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEeCccc
Confidence 4789999999999999999999999999999994 589999999999999999 9999999 7999999876543
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.9e-13 Score=125.74 Aligned_cols=76 Identities=28% Similarity=0.521 Sum_probs=71.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
...+.|+|.|||+...+-||..+|++||+|++|+| +|||+||+|++.+||++|-++|||..| .|++|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V--EGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV--EGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee--eceEEEEecc
Confidence 34689999999999999999999999999999999 599999999999999999999999999 8999999988
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 6653
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=5.2e-13 Score=99.55 Aligned_cols=63 Identities=35% Similarity=0.694 Sum_probs=57.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 58 IFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 58 l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
|||+|||+.+|+++|.++|..||.|..|.|. +++|||+|.++++|..|++.++|..| +|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~--~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI--DGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE--CCEEcC
Confidence 7999999999999999999999999999983 58999999999999999999999999 798874
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.2e-13 Score=118.90 Aligned_cols=75 Identities=36% Similarity=0.608 Sum_probs=69.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
..+++|-|.||+.+++|++|++||..||.|..|.| .+|||||.|.+.++|.+||+.|||.-+ +.-.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEEE
Confidence 35788999999999999999999999999999988 489999999999999999999999988 78889999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99764
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=4.9e-13 Score=128.74 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=69.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcCh--HhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDE--RDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~--~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
....+||||||++.+|+++|..+|..||.|..|.|. +|||||+|.+. .++.+||..|||..+ .|+.|+|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCee--cCceeEEeec
Confidence 345789999999999999999999999999999995 89999999987 789999999999999 8999999998
Q ss_pred ecc
Q 014331 127 KHE 129 (426)
Q Consensus 127 ~~~ 129 (426)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 765
No 71
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.9e-12 Score=109.86 Aligned_cols=75 Identities=28% Similarity=0.493 Sum_probs=69.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
...++|||+|| |..+.+.+|+++|.+||.|..|.|. ..||||+|++..+|++||..-+|..++|..|.|+|+..
T Consensus 4 r~~~~iyvGNL-P~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNL-PGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCC-CcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 34679999999 7888899999999999999999994 46999999999999999999999999999999999977
Q ss_pred C
Q 014331 224 D 224 (426)
Q Consensus 224 ~ 224 (426)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=5.4e-14 Score=118.95 Aligned_cols=76 Identities=25% Similarity=0.546 Sum_probs=70.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
..+.-|||||||+.+||.||.-+|++||+|++|.| ++||||+.|+++.+...|+..|||..| .|+.|+|.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 44667999999999999999999999999999999 489999999999999999999999999 79999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
......
T Consensus 111 Hv~~Yk 116 (219)
T KOG0126|consen 111 HVSNYK 116 (219)
T ss_pred eccccc
Confidence 875544
No 73
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.37 E-value=7.8e-12 Score=116.79 Aligned_cols=167 Identities=17% Similarity=0.244 Sum_probs=131.5
Q ss_pred hccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 50 FEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 50 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
......-.|.|.+|-..++|.+|.+.++.||.|..|.+ .+..|.|+|++.+.|++++..-....+.+.|+.--+.++.
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 34456778999999999999999999999999999887 4789999999999999998544334444478887777775
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCC-CCCCCHHHHHHhhccCCceEEEEEecC---EEEEEecCHHHHHHHH
Q 014331 128 HERGIRRPGGGSSARRPSTNTRPSKTLFVINFD-PYHTRTRDLERHFEPYGKIISVRIRRN---FAFVQYEVQEDATRAL 203 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-p~~~~~~~L~~~F~~~G~v~~v~i~~g---~afV~f~~~~~A~~A~ 203 (426)
.+... ........+++.|.+.=|. -+.+|-+-|..++...|+|..|.|.+. .|+|||++.+.|++|.
T Consensus 106 sq~i~---------R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 106 SQCIE---------RPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAK 176 (494)
T ss_pred hhhhc---------cCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHH
Confidence 44321 1112334556666655443 456778899999999999999998643 8999999999999999
Q ss_pred HHcCCCCCC-C-ceEEEEEeecCC
Q 014331 204 DATNMSKLT-D-RVISVEYAVRDD 225 (426)
Q Consensus 204 ~~l~g~~~~-g-~~l~v~~a~~~~ 225 (426)
..|||..|. | .+|+|+||++.+
T Consensus 177 ~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 177 AALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred hhcccccccccceeEEEEecCcce
Confidence 999999987 3 789999999753
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.37 E-value=1.4e-11 Score=117.25 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=65.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
...++|||.|| |+++||+.|++.|..||.|.++.|+ +..+.|.|.++++|+.|+..|+|..+.|+.|.|.|.
T Consensus 534 rKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 34478999999 8999999999999999999999994 446789999999999999999999999999999873
No 75
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=2.1e-12 Score=95.95 Aligned_cols=63 Identities=37% Similarity=0.662 Sum_probs=59.1
Q ss_pred EEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 154 l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
|||+|| |..+++++|+++|.+||.|..+.+. +++|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999 7899999999999999999999884 46999999999999999999999999999885
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.9e-13 Score=115.08 Aligned_cols=77 Identities=25% Similarity=0.534 Sum_probs=72.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...+|||||+|...+||.-|...|-.||.|.+|.|+ +|||||+|...|+|.+||..||+.+| .|+.|.|.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 456899999999999999999999999999999994 89999999999999999999999999 89999999
Q ss_pred EeeccCC
Q 014331 125 WTKHERG 131 (426)
Q Consensus 125 ~a~~~~~ 131 (426)
++++.+.
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9988763
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.6e-12 Score=103.97 Aligned_cols=80 Identities=28% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
...++||||+|| .+-++|++|.++|.++|+|..|.| +-|||||+|...++|..|+..++|+.++.+.|.|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 456789999999 799999999999999999999988 35899999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 014331 220 YAVRDDDDR 228 (426)
Q Consensus 220 ~a~~~~~~~ 228 (426)
|...-.+.+
T Consensus 112 ~D~GF~eGR 120 (153)
T KOG0121|consen 112 WDAGFVEGR 120 (153)
T ss_pred ccccchhhh
Confidence 987654433
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=4.1e-12 Score=94.06 Aligned_cols=65 Identities=42% Similarity=0.793 Sum_probs=60.9
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
+|||+|||..+++++|.++|..||+|..+.+. +++|||+|.+.++|+.|++.|+|..| .|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~--~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL--GGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE--CCEEEee
Confidence 59999999999999999999999999999884 39999999999999999999999999 7988876
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=5.5e-12 Score=101.72 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
.-......|||.++ ...+++++|.+.|..||+|+.+.+. +|||+|+|++.++|++|+..|||..+.|..|.
T Consensus 67 qrSVEGwIi~Vtgv-HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGV-HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred ccceeeEEEEEecc-CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 33455788999999 6788899999999999999999984 79999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|.|+-.+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999987643
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.4e-12 Score=117.53 Aligned_cols=76 Identities=34% Similarity=0.513 Sum_probs=71.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.....+.|+|.|| |+...+.||+.+|++||+|.+|.|. |||+||+|++.+||++|-++|||..+.|++|+|..
T Consensus 92 s~~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 92 SKDTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3455689999999 8999999999999999999999994 89999999999999999999999999999999999
Q ss_pred eec
Q 014331 221 AVR 223 (426)
Q Consensus 221 a~~ 223 (426)
|..
T Consensus 171 ATa 173 (376)
T KOG0125|consen 171 ATA 173 (376)
T ss_pred cch
Confidence 875
No 81
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=9e-12 Score=88.52 Aligned_cols=53 Identities=36% Similarity=0.746 Sum_probs=49.0
Q ss_pred HHHHHhhcCCeeEEEEe--C-CEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 72 LERLFRRYGKVDRVDMK--S-GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 72 L~~~F~~~G~V~~v~i~--~-g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
|.++|++||+|..|.+. + ++|||+|.+.++|..|++.|||..| .|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68999999999999995 3 9999999999999999999999999 8999999986
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.4e-12 Score=112.82 Aligned_cols=73 Identities=19% Similarity=0.478 Sum_probs=63.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++||||+|++.++.++|+++|++||+|++..| ++||+||+|.+.++|..|++..| -.| +|++..|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piI--dGR~aNcn 86 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PII--DGRKANCN 86 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccc--cccccccc
Confidence 44679999999999999999999999999998777 49999999999999999995444 334 89999998
Q ss_pred Eeec
Q 014331 125 WTKH 128 (426)
Q Consensus 125 ~a~~ 128 (426)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8765
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.2e-11 Score=113.09 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=66.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
..+|||+|| +..+++++|+++|+.||+|..|.|+ ++||||+|.+.++|..|+. |||..|.|+.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999 7889999999999999999999994 6899999999999999995 9999999999999998753
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.5e-11 Score=90.31 Aligned_cols=67 Identities=45% Similarity=0.827 Sum_probs=62.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
+|+|+|||..+++++|.++|..||.|..+.+. .++|||+|.+.++|..|++.+++..+ .|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~--~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL--GGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEeC
Confidence 58999999999999999999999999999883 58999999999999999999999998 799998864
No 85
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.4e-12 Score=132.28 Aligned_cols=151 Identities=25% Similarity=0.388 Sum_probs=130.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
..+.|||+|||+..+++.+|...|..+|.|.+|.|. ..||||.|.+...|-.|+.+|.+..|+ .| .+.+.+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~-~g-~~r~gl 447 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG-NG-THRIGL 447 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc-cC-cccccc
Confidence 448899999999999999999999999999999994 459999999999999999999999885 22 334433
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecC--EEEEEecCHHHHHHHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRAL 203 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g--~afV~f~~~~~A~~A~ 203 (426)
... ...++..++|++| ..++....|...|..||.|..|.+-.| ||+|.|++...|+.|+
T Consensus 448 G~~------------------kst~ttr~~sggl-g~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 448 GQP------------------KSTPTTRLQSGGL-GPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAAT 508 (975)
T ss_pred ccc------------------ccccceeeccCCC-CCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhH
Confidence 321 2456788999999 567779999999999999999999766 9999999999999999
Q ss_pred HHcCCCCCCC--ceEEEEEeecC
Q 014331 204 DATNMSKLTD--RVISVEYAVRD 224 (426)
Q Consensus 204 ~~l~g~~~~g--~~l~v~~a~~~ 224 (426)
..|-|..|+| +.|.|.||...
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HHHhcCcCCCCCcccccccccCC
Confidence 9999999985 77999998764
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.25 E-value=2.4e-11 Score=89.55 Aligned_cols=63 Identities=38% Similarity=0.760 Sum_probs=58.1
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 60 CGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 60 V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
|+|||..+++++|+++|..||.|..|.|. +++|||+|.+.++|..|+..|++..| .|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~--~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL--DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee--CCcEEEeC
Confidence 68999999999999999999999999883 47999999999999999999999999 79988873
No 87
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.2e-11 Score=108.06 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=70.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
....+|-|.|| +..+++.+|+++|.+||.|..|.|. +|||||.|.+.++|++||..|||.-++.-.|.|+|
T Consensus 187 ~D~~tvRvtNL-sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNL-SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecC-ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999 8999999999999999999999983 78999999999999999999999999999999999
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
+++.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9874
No 88
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.9e-12 Score=117.36 Aligned_cols=77 Identities=22% Similarity=0.420 Sum_probs=70.9
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
..+.+.|||..|.+.+|.++|+-+|+.||+|..|.| +..||||+|++.+++++|.-.|++..| +++.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEe
Confidence 456789999999999999999999999999999998 367999999999999999999999999 9999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9986644
No 89
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.4e-10 Score=113.40 Aligned_cols=144 Identities=21% Similarity=0.398 Sum_probs=106.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----------eCC---EEEEEEcChHhHHHHHHhcCCceecCCCcE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----------KSG---FAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----------~~g---~aFV~F~~~~~A~~Al~~lng~~~~~~g~~ 120 (426)
.++||||+||.+++|++|...|..||.|. |.. ++| |+|+.|+++..+..-|.++.- ....
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-----~~~~ 332 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-----GEGN 332 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-----cccc
Confidence 68999999999999999999999999875 222 367 999999999998876655432 1222
Q ss_pred EEEEEeeccCCCC----CC---CCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhc-cCCceEEEEE--------
Q 014331 121 LRVEWTKHERGIR----RP---GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE-PYGKIISVRI-------- 184 (426)
Q Consensus 121 i~V~~a~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~-~~G~v~~v~i-------- 184 (426)
+.++.+......+ .+ ..............+.+||||++| |..++.++|..+|+ .||.|..+-|
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgv-prpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGL-PRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCC-CCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 2332222221110 00 011111223455678899999999 89999999999999 8999999877
Q ss_pred ecCEEEEEecCHHHHHHHHHH
Q 014331 185 RRNFAFVQYEVQEDATRALDA 205 (426)
Q Consensus 185 ~~g~afV~f~~~~~A~~A~~~ 205 (426)
|+|.|-|+|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 589999999999999999864
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=3.3e-11 Score=116.32 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe----cCEEEEEecCH--HHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQ--EDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
.....+|||+|| .+.+++++|..+|..||.|..|.|+ +|||||+|.+. .++.+||..|||..|.|+.|+|..|
T Consensus 7 ~~~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 344679999999 8999999999999999999999997 68999999987 7899999999999999999999999
Q ss_pred ecC
Q 014331 222 VRD 224 (426)
Q Consensus 222 ~~~ 224 (426)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 863
No 91
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=2.5e-11 Score=123.00 Aligned_cols=74 Identities=24% Similarity=0.558 Sum_probs=70.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.+|||||.|+..++|.||.++|+.||+|.+|.| .++||||.+....+|.+||.+|+...| .++.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeeeccCC
Confidence 789999999999999999999999999999999 599999999999999999999999888 79999999997765
No 92
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=1.5e-11 Score=104.52 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=92.6
Q ss_pred eeEEEEecCCchhHHhhhcC-CcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE-
Q 014331 11 HYLLIVYSHSVWPVQKKYLP-RRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM- 87 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i- 87 (426)
..++|+.|..+|+++-++.. +...+.|.++...+............+|||+||.+.++|..|.++|+.||.|.. -+|
T Consensus 51 qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~ 130 (203)
T KOG0131|consen 51 QGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIM 130 (203)
T ss_pred cceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCccc
Confidence 45788999999888776653 344456666665554322222233578999999999999999999999998865 122
Q ss_pred -------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 88 -------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 88 -------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
++|||||.|.+.+.+.+||+.|||..+ +.++|.|.++..+.
T Consensus 131 rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l--~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 131 RDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL--CNRPITVSYAFKKD 178 (203)
T ss_pred ccccCCCCCCCeEEechhHHHHHHHHHHhccchh--cCCceEEEEEEecC
Confidence 478999999999999999999999999 79999999997765
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=6.7e-11 Score=91.15 Aligned_cols=74 Identities=30% Similarity=0.472 Sum_probs=68.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
.-+..|||.|| |+.++.+++-++|.+||.|.+|.|- +|.|||.|++..+|.+|++.|+|..+.+..|.|-+-..
T Consensus 16 evnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34678999999 8999999999999999999999993 78999999999999999999999999999999988554
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3.6e-11 Score=119.44 Aligned_cols=169 Identities=20% Similarity=0.360 Sum_probs=132.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhc-----------C-CeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRY-----------G-KVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKG 118 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G-~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g 118 (426)
-+...+||++|++.++++.+..+|..- | .|..|.| .++||||+|.+.++|..|+ .+++..| .|
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f--~g 249 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIF--EG 249 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhh--CC
Confidence 346789999999999999999999753 2 3677777 4899999999999999999 8999988 79
Q ss_pred cEEEEEEeeccCCCCCCCC-------CCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE-------
Q 014331 119 RRLRVEWTKHERGIRRPGG-------GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI------- 184 (426)
Q Consensus 119 ~~i~V~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i------- 184 (426)
..+++.--........-.. -...............+||++| |...++.++.++...||.+....+
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~l-p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGL-PLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccC-cCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9888754333221100000 0011112233444578999999 899999999999999999887766
Q ss_pred -ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 185 -RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 185 -~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
.+||||.+|.+......|+..|||+.+++..|.|..|....
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 37899999999999999999999999999999999987653
No 95
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.19 E-value=6.5e-11 Score=88.11 Aligned_cols=63 Identities=35% Similarity=0.643 Sum_probs=56.7
Q ss_pred EEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 154 l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
|||+|| |..+++++|.++|..||.|..+.+. +++|||+|.+.++|..|++.+++..|+|+.|.
T Consensus 1 v~i~nl-p~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNL-PPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESS-TTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999 7889999999999999999999884 47999999999999999999999999999874
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=5e-11 Score=117.81 Aligned_cols=74 Identities=35% Similarity=0.672 Sum_probs=70.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
+.|||||||+++++++|..+|+..|.|.++++ .+|||||+|.++++|..|++.|||.+| .|++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 88999999999999999999999999999999 489999999999999999999999999 79999999987
Q ss_pred ccCC
Q 014331 128 HERG 131 (426)
Q Consensus 128 ~~~~ 131 (426)
....
T Consensus 97 ~~~~ 100 (435)
T KOG0108|consen 97 NRKN 100 (435)
T ss_pred ccch
Confidence 7653
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.17 E-value=1.1e-10 Score=82.80 Aligned_cols=53 Identities=32% Similarity=0.630 Sum_probs=49.3
Q ss_pred HHHhhccCCceEEEEEec---CEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 169 LERHFEPYGKIISVRIRR---NFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 169 L~~~F~~~G~v~~v~i~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
|.++|++||+|..+.+.. ++|||+|.+.++|..|+..|||..+.|+.|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999964 89999999999999999999999999999999986
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=2.4e-10 Score=102.90 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
...+|||+|| +..+++++|+++|+.||+|.+|.|. .++|||+|.+.++|..|+ .|+|..|.+..|.|.....
T Consensus 4 ~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 3579999999 7899999999999999999999996 369999999999999999 5999999999999988654
No 99
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=9.6e-12 Score=108.46 Aligned_cols=138 Identities=22% Similarity=0.263 Sum_probs=112.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
.+..+||||+||...++|+-|.+||-+.|+|..|.|+ ..||||+|+++-.+.-|++.|||..+ .+..|.|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l--~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDL--EEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchh--ccchhhccc
Confidence 3557899999999999999999999999999999994 34999999999999999999999999 799999887
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQED 198 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~ 198 (426)
-..... .-| ...++++.+...|..-|.+..+.++ ..++|+.+.-...
T Consensus 84 r~G~sh-------------------------apl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 84 RCGNSH-------------------------APL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCA 137 (267)
T ss_pred ccCCCc-------------------------chh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhc
Confidence 644320 014 2455678888889999988888884 4689999998888
Q ss_pred HHHHHHHcCCCCCCCceEE
Q 014331 199 ATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 199 A~~A~~~l~g~~~~g~~l~ 217 (426)
.-.|+....+....-+.+.
T Consensus 138 ~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 138 VPFALDLYQGLELFQKKVT 156 (267)
T ss_pred CcHHhhhhcccCcCCCCcc
Confidence 8888888777665544443
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=2.8e-10 Score=84.06 Aligned_cols=66 Identities=45% Similarity=0.701 Sum_probs=60.6
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
+|+|.|| |..+++++|+++|.+||.|..+.+. .++|||+|.+.++|+.|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999 7888899999999999999998885 3899999999999999999999999999998873
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.5e-11 Score=103.73 Aligned_cols=77 Identities=34% Similarity=0.522 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
....+|||++| ...+++.-|...|-.||.|+.|.+| +|||||+|...+||.+||+.||+.++.|+.|.|.+
T Consensus 8 ~~KrtlYVGGl-adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGL-ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccc-hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34579999999 7899999999999999999999996 78999999999999999999999999999999999
Q ss_pred eecCCC
Q 014331 221 AVRDDD 226 (426)
Q Consensus 221 a~~~~~ 226 (426)
|++.+-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 998653
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=3.1e-10 Score=100.47 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=65.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
....+|||++| +|.+..++|+++|++||+|+++.|. +||+||+|.+.+.|.+|++..| -.|+|++..|.+
T Consensus 10 T~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 34578999999 8999999999999999999998884 7999999999999999998654 578999999998
Q ss_pred eec
Q 014331 221 AVR 223 (426)
Q Consensus 221 a~~ 223 (426)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 865
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=4.4e-11 Score=101.49 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=67.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
+.-|||+|| |+..||.||..+|++||+|++|.+. +||||++|++.....-|++.|||..|.|+.|.|....
T Consensus 35 sA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 557999999 8999999999999999999999995 6899999999999999999999999999999999854
Q ss_pred c
Q 014331 223 R 223 (426)
Q Consensus 223 ~ 223 (426)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 104
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=6.8e-10 Score=103.37 Aligned_cols=79 Identities=20% Similarity=0.423 Sum_probs=68.9
Q ss_pred hccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 50 FEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 50 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
.+.....+|||++|...++|.+|.++|.+||+|..|.+. +++|||+|.+.++|+.|.+.+-...+. +|..|.|.|..
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI-~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI-NGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee-cceEEEEEeCC
Confidence 344557899999999999999999999999999999884 789999999999999988876554443 99999999998
Q ss_pred cc
Q 014331 128 HE 129 (426)
Q Consensus 128 ~~ 129 (426)
+.
T Consensus 302 ~~ 303 (377)
T KOG0153|consen 302 PK 303 (377)
T ss_pred Cc
Confidence 73
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.02 E-value=1.6e-09 Score=80.38 Aligned_cols=67 Identities=46% Similarity=0.711 Sum_probs=61.7
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
+|+|.|| |..+++++|.++|..||.|..+.+. .++|||+|.+.++|..|++.+++..+.|..|.|.+
T Consensus 1 ~i~i~~l-~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNL-PPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCC-CCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999 7888899999999999999999884 47999999999999999999999999999999864
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.01 E-value=3.1e-09 Score=103.34 Aligned_cols=205 Identities=17% Similarity=0.176 Sum_probs=133.1
Q ss_pred eEEEEecCCchhHHhhhcCCcceecCeecccccc-----hhh-----hhccCCCccEEEcCCCCCCCHHHHHHHHhhcCC
Q 014331 12 YLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQL-----SIA-----AFEVAMMRPIFCGNFEYDARQSDLERLFRRYGK 81 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 81 (426)
--+||.|...++++++|+.....+-.--+.+-+. .+. .......-+|-+.+||+.||++||.++|+-.-.
T Consensus 50 GeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I 129 (510)
T KOG4211|consen 50 GEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI 129 (510)
T ss_pred cceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc
Confidence 3589999999999999987776654433332221 111 111124568999999999999999999998755
Q ss_pred eeE-EEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCC----------C----------
Q 014331 82 VDR-VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI----------R---------- 133 (426)
Q Consensus 82 V~~-v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~----------~---------- 133 (426)
|.. |.| +.|-|||+|++++.|++|| .-|...| .-+-|.|..+...... .
T Consensus 130 v~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~i--GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a 206 (510)
T KOG4211|consen 130 VPDGILLPMDQRGRPTGEAFVQFESQESAEIAL-GRHRENI--GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGA 206 (510)
T ss_pred cccceeeeccCCCCcccceEEEecCHHHHHHHH-HHHHHhh--ccceEEeehhHHHHHHhhccccccccCCCCccccccC
Confidence 555 333 3789999999999999999 5555666 3455666432111000 0
Q ss_pred -CCC--------------------CC--------------C----------CCCCC------------CCCCCCCcEEEE
Q 014331 134 -RPG--------------------GG--------------S----------SARRP------------STNTRPSKTLFV 156 (426)
Q Consensus 134 -~~~--------------------~~--------------~----------~~~~~------------~~~~~~~~~l~v 156 (426)
+.. .+ . ..... .........++.
T Consensus 207 ~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~M 286 (510)
T KOG4211|consen 207 PRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHM 286 (510)
T ss_pred CccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeee
Confidence 000 00 0 00000 000111256778
Q ss_pred ecCCCCCCCHHHHHHhhccCCce-EEEEE-----ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 157 INFDPYHTRTRDLERHFEPYGKI-ISVRI-----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 157 ~nl~p~~~~~~~L~~~F~~~G~v-~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
.+| |+..++.++.++|...-.+ +.|.+ ..|-|+|+|.+.++|..|+- -++..+..+-|.+-..
T Consensus 287 RGl-py~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 287 RGL-PYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLN 355 (510)
T ss_pred cCC-CccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-cCCcccCcceeeeccc
Confidence 899 7999999999999976544 33444 36899999999999999985 4666666666655443
No 107
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.00 E-value=6.4e-10 Score=105.47 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=96.3
Q ss_pred eEEEEecCCchhHHhhhcCCcceecCeecccccchhhh-----hccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEE
Q 014331 12 YLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAA-----FEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVD 86 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~ 86 (426)
-+.||.|+..+.+...+......+.+..+..+....-. .......+||||+||.++++++|++.|++||.|..+.
T Consensus 49 gFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 49 GFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred cccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 46789999999999999888888888877766522111 1112356999999999999999999999999998887
Q ss_pred E--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCC
Q 014331 87 M--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 131 (426)
Q Consensus 87 i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~ 131 (426)
+ .+||+||.|.+++.+++++ .+.-+.| +|+.+.|..|.++..
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~--~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDF--NGKKVEVKRAIPKEV 178 (311)
T ss_pred EeecccccccccceeeEeccccccceec-ccceeee--cCceeeEeeccchhh
Confidence 7 3899999999999999998 7777888 899999999987763
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.4e-09 Score=80.92 Aligned_cols=53 Identities=32% Similarity=0.632 Sum_probs=47.5
Q ss_pred HHHHHHHHh----hcCCeeEEE-E----------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 69 QSDLERLFR----RYGKVDRVD-M----------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 69 e~~L~~~F~----~~G~V~~v~-i----------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
+++|+++|. +||.|..|. | ++|||||+|.+.++|.+|+..|||..| .|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~--~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF--DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEe
Confidence 578889998 999999884 3 278999999999999999999999999 8999876
No 109
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=102.17 Aligned_cols=72 Identities=38% Similarity=0.637 Sum_probs=67.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
..+|||+|| +..+++++|.++|.+||.|..+.+. +|+|||+|.+.++|..|++.|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999 7999999999999999999888873 6899999999999999999999999999999999976
Q ss_pred c
Q 014331 223 R 223 (426)
Q Consensus 223 ~ 223 (426)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 110
>smart00360 RRM RNA recognition motif.
Probab=98.95 E-value=2.5e-09 Score=78.51 Aligned_cols=63 Identities=41% Similarity=0.650 Sum_probs=57.2
Q ss_pred EecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 156 VINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 156 v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
|+|| +..+++++|+++|.+||.|..+.+. +++|||+|.+.++|..|+..|++..+.|+.|.|+
T Consensus 1 i~~l-~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNL-PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCC-CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 4688 7888999999999999999999884 3699999999999999999999999999998873
No 111
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.94 E-value=1.2e-10 Score=110.49 Aligned_cols=148 Identities=24% Similarity=0.382 Sum_probs=124.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCc-eecCCCcEEEEEEeeccCCC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRR--YGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT-EFGRKGRRLRVEWTKHERGI 132 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~--~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~-~~~~~g~~i~V~~a~~~~~~ 132 (426)
..||++||.+.++..+|..+|.. .|--..+.|..|||||.+.+...|.+|++.|+|+ .+ .|..+.|+++..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~sv~kkq- 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHSVPKKQ- 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhh--cCceeeccchhhHHH-
Confidence 57999999999999999999985 3444567778999999999999999999999996 45 899999999877652
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcC
Q 014331 133 RRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATN 207 (426)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~ 207 (426)
..+.+.|.|+ |....|+-|..+..+||.|..|... ....-|+|.+.+.+..|+..|+
T Consensus 79 -----------------rsrk~Qirni-ppql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~ 140 (584)
T KOG2193|consen 79 -----------------RSRKIQIRNI-PPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLN 140 (584)
T ss_pred -----------------HhhhhhHhcC-CHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2345788999 5566699999999999999888663 2245578889999999999999
Q ss_pred CCCCCCceEEEEEeecC
Q 014331 208 MSKLTDRVISVEYAVRD 224 (426)
Q Consensus 208 g~~~~g~~l~v~~a~~~ 224 (426)
|..+....+.|.|-...
T Consensus 141 g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 141 GPQLENQHLKVGYIPDE 157 (584)
T ss_pred chHhhhhhhhcccCchh
Confidence 99999999999987654
No 112
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.91 E-value=3.4e-09 Score=93.76 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=70.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHH----hhccCCceEEEEE-----ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLER----HFEPYGKIISVRI-----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~----~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
..++.||||.|| ...+..++|+. +|++||+|.+|.. .+|.|||.|.+.+.|..|+..|+|..|.|+.+.|
T Consensus 6 ~~pn~TlYInnL-nekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 6 VNPNGTLYINNL-NEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred cCCCceEeehhc-cccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345569999999 78888888877 9999999999988 3799999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.||+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998643
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.3e-09 Score=97.81 Aligned_cols=77 Identities=18% Similarity=0.369 Sum_probs=68.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
-...|+|||-.||.+.+..||.++|-.||-|++.++ +|+|+||.|.++.+|+.||.+|||..|| =+.|+|
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG--MKRLKV 359 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG--MKRLKV 359 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh--hhhhhh
Confidence 345899999999999999999999999999998877 5999999999999999999999999995 567888
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.+..++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 7765543
No 114
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.5e-09 Score=107.03 Aligned_cols=165 Identities=19% Similarity=0.237 Sum_probs=109.2
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
....+|+|-|||..|++++|..+|+.||+|..|.+ ..|.+||+|.|..+|+.|+++||+..| .|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~--~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREI--AGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHh--hhhhhcCCCcccc
Confidence 45789999999999999999999999999999888 489999999999999999999999999 6888882211110
Q ss_pred CCCCCCC-------CCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--ecCEEEEEecCHHHHH
Q 014331 130 RGIRRPG-------GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RRNFAFVQYEVQEDAT 200 (426)
Q Consensus 130 ~~~~~~~-------~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~ 200 (426)
......+ ....+........ -..+++ .|.|. .+..-++..|.-+|.+..-.. ....-|++|.+..++.
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~-~~~~~g-~l~P~-~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~~~~s~a 227 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWP-RGQLFG-MLSPT-RSSILLEHISSVDGSSPGRETPLLNHQRFVEFADNRSYA 227 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCc-CCccee-eeccc-hhhhhhhcchhccCccccccccchhhhhhhhhccccchh
Confidence 0000000 0000011111111 222332 37443 335556667777787766222 2447889999988886
Q ss_pred HHHHHcCCCCCCCceEEEEEeec
Q 014331 201 RALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 201 ~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
.++..+ |..+.+....+.+...
T Consensus 228 ~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 228 FSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hcccCC-ceecCCCCceEEecCC
Confidence 666644 6666666666665544
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.86 E-value=2.5e-09 Score=100.58 Aligned_cols=166 Identities=21% Similarity=0.256 Sum_probs=112.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRY----GKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~----G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.-.|-+.+||+++|+.||.++|..- |.++.|.+ ..|-|||.|..+++|+.||. -|-..|| .+-|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iG--qRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIG--QRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHh--HHHHHH
Confidence 4567788999999999999999732 22233333 26899999999999999994 4444441 333333
Q ss_pred EEeeccC--------------C-CCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCc-eEE--EEE-
Q 014331 124 EWTKHER--------------G-IRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IIS--VRI- 184 (426)
Q Consensus 124 ~~a~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~-v~~--v~i- 184 (426)
..+.... . ...+.................+|-+.+| |+..+.+||.++|..|.. |.. |.|
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv 316 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMV 316 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEE
Confidence 2211110 0 0111111111112223344678999999 899999999999998873 222 333
Q ss_pred ------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 185 ------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 185 ------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
+.|-|||+|.+.++|..|....+......+.|+|-.+..+
T Consensus 317 ~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 317 LNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred EcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 4689999999999999999999988888999988776543
No 116
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=2.6e-09 Score=95.39 Aligned_cols=74 Identities=31% Similarity=0.553 Sum_probs=69.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
..|||++| ++.+.+.+|+.+|..||.|..|.|..+|+||+|.+..+|.+|+..||+..|.|..+.|+++.....
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 46899999 899999999999999999999999999999999999999999999999999999999999987543
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.84 E-value=5.7e-09 Score=103.36 Aligned_cols=75 Identities=28% Similarity=0.523 Sum_probs=70.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
..|||+|+ |+.+++++|..+|+..|.|..+++ ++||||++|.+.++|..|+..|||.++.|+.|.|.|+..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999 899999999999999999999999 389999999999999999999999999999999999987
Q ss_pred CCCC
Q 014331 224 DDDD 227 (426)
Q Consensus 224 ~~~~ 227 (426)
.+..
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6543
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.3e-09 Score=96.99 Aligned_cols=79 Identities=29% Similarity=0.491 Sum_probs=70.6
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec--------CEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--------NFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~--------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
....+|.+.|||..|. ..|+++||.-+|+.||+|..|.|.+ .||||+|++.+++++|.-+|++..|+++.|
T Consensus 233 Ad~~PPeNVLFVCKLN-PVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLN-PVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred cccCCCcceEEEEecC-CcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 3446888999999995 4666999999999999999999963 399999999999999999999999999999
Q ss_pred EEEEeecC
Q 014331 217 SVEYAVRD 224 (426)
Q Consensus 217 ~v~~a~~~ 224 (426)
+|.|+..-
T Consensus 312 HVDFSQSV 319 (479)
T KOG0415|consen 312 HVDFSQSV 319 (479)
T ss_pred Eeehhhhh
Confidence 99997754
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=7.2e-10 Score=113.98 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=115.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..++||.||+..+.+.+|...|..+|.|..|.| .+|+|||+|..+++|.+||...+++.+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~---g-------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF---G-------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh---h--------
Confidence 468999999999999999999999998877666 389999999999999999966666666 3
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE-------ecCEEEEEecCHHHH
Q 014331 127 KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDA 199 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A 199 (426)
...|+|.|+ |+..|.++|+.+|.++|.++++.+ ++|.|||.|.+..+|
T Consensus 736 ------------------------K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 736 ------------------------KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADA 790 (881)
T ss_pred ------------------------hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchh
Confidence 135788899 889999999999999999999876 478999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEEeec
Q 014331 200 TRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 200 ~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
..++..+++..+.-..+.|....+
T Consensus 791 s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 791 SRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhcccchhhhhhhcCccccccCC
Confidence 999998888888877777777444
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.81 E-value=9e-09 Score=104.85 Aligned_cols=75 Identities=32% Similarity=0.512 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
..++||||+.| +..+++.||..+|+.||+|..|.+ +++||||++....+|.+|+.+|+...+.++.|+|.||..+
T Consensus 419 V~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred Eeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 34589999999 789999999999999999999998 4899999999999999999999999999999999998875
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=1.2e-08 Score=75.92 Aligned_cols=53 Identities=28% Similarity=0.508 Sum_probs=47.1
Q ss_pred HHHHHHhhc----cCCceEEEE---Ee--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 166 TRDLERHFE----PYGKIISVR---IR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 166 ~~~L~~~F~----~~G~v~~v~---i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
+++|+++|. +||.|..|. ++ +|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999884 21 679999999999999999999999999999986
No 122
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.77 E-value=6.9e-09 Score=98.19 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=124.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCC-ceecCCCcEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDR-TEFGRKGRRLRVE 124 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng-~~~~~~g~~i~V~ 124 (426)
..+++||+++...+.+.++..+|..+|.+..+.+ ++++++|.|...+.+..|| ++.+ ..+ .+..+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~--~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVL--DGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-Hhhhcccc--ccccccCc
Confidence 4789999999999999999999999998877666 3899999999999999999 4555 344 45555555
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEE-EecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecC
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLF-VINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV 195 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~ 195 (426)
+....... ... ........+..++| |+|| ++.++.++|..+|..+|.|..+.++ +++|||.|.+
T Consensus 164 l~~~~~~~--~~n----~~~~~~~~~s~~~~~~~~~-~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 164 LNTRRGLR--PKN----KLSRLSSGPSDTIFFVGEL-DFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccccc--ccc----hhcccccCccccceeeccc-ccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 54433310 000 11112233344555 9999 7999999999999999999999995 6899999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 196 QEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 196 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
...+..|+.. +...+.+..+.+++....
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred chhHHHHhhc-ccCcccCcccccccCCCC
Confidence 9999999987 888889999999887764
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=1.2e-08 Score=100.24 Aligned_cols=74 Identities=32% Similarity=0.556 Sum_probs=69.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.++|||.+|...+...+|+.||++||+|+-.+| .++|+||+|.+.++|.+||+.|+-+.| +|+.|.|+.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISVEka 482 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISVEKA 482 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeeeeec
Confidence 579999999999999999999999999998877 278999999999999999999999999 8999999998
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 8765
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.75 E-value=2.3e-08 Score=87.13 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=67.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRY-GKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.....+||..||..+.+.+|..+|.+| |.|..+.| ++|||||+|++++.|+.|-+.||+..| .++.|.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl--~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL--MEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh--hhheeee
Confidence 446789999999999999999999998 78888888 389999999999999999999999999 6999999
Q ss_pred EEeecc
Q 014331 124 EWTKHE 129 (426)
Q Consensus 124 ~~a~~~ 129 (426)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987655
No 125
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.74 E-value=2.2e-08 Score=101.10 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=70.1
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 121 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i 121 (426)
..+++|||+||++.++++.|...|+.||+|..|+|. ..+|||-|-+..+|+.|++.|+|..| .+..|
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e~ 249 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYEM 249 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeeee
Confidence 457899999999999999999999999999999993 67999999999999999999999999 79999
Q ss_pred EEEEeeccC
Q 014331 122 RVEWTKHER 130 (426)
Q Consensus 122 ~V~~a~~~~ 130 (426)
++.|++...
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999985544
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=3.7e-08 Score=91.94 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=68.9
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHH-cCCCCCCCceEEEE
Q 014331 143 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDA-TNMSKLTDRVISVE 219 (426)
Q Consensus 143 ~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~l~v~ 219 (426)
...+......+|||++|. ..+++.+|.++|.+||+|..|.+. +++|||+|.+.++|+.|... +|...|+|.+|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~-d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLN-DEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccc-cchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 344556667899999994 578899999999999999999885 67999999999999988765 47777899999999
Q ss_pred Eeec
Q 014331 220 YAVR 223 (426)
Q Consensus 220 ~a~~ 223 (426)
|...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9987
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.71 E-value=4.2e-08 Score=89.59 Aligned_cols=76 Identities=24% Similarity=0.446 Sum_probs=68.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
....+|+|.||++.|+++||++||..||.+..+.| +.|.|-|.|...++|+.||+.|||+.+ +|..|++..
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l--dG~~mk~~~ 158 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL--DGRPMKIEI 158 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc--CCceeeeEE
Confidence 44578999999999999999999999998888888 379999999999999999999999888 999999987
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
.....
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 75543
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.61 E-value=8.7e-08 Score=94.45 Aligned_cols=76 Identities=29% Similarity=0.542 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
.....+|||.+| ...|...||+.||++||+|+-..|. +.|+||++.+.++|.+||..|+.++|.|+.|.|+
T Consensus 402 s~~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 344578999999 6788899999999999999988884 4599999999999999999999999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
.++..
T Consensus 481 kaKNE 485 (940)
T KOG4661|consen 481 KAKNE 485 (940)
T ss_pred ecccC
Confidence 98764
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.54 E-value=1.7e-08 Score=95.40 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=52.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
.+||+|++|+..+...+|.++|..+|+|....+- .-+|.|+|....+...|+ .++|..|
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRER 213 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhh
Confidence 5899999999999999999999999999887772 568889999999999999 6777777
No 130
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.52 E-value=1.6e-07 Score=92.57 Aligned_cols=70 Identities=27% Similarity=0.515 Sum_probs=59.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..+|||+|||.++|+++|+++|..||.|+...|. .+||||+|.+.++++.||++ +-..| .+++|.|+--
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~i--g~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEI--GGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-Ccccc--CCeeEEEEec
Confidence 4569999999999999999999999999987772 28999999999999999954 45555 7999999854
Q ss_pred e
Q 014331 127 K 127 (426)
Q Consensus 127 ~ 127 (426)
.
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 3
No 131
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.51 E-value=3.6e-07 Score=79.74 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=68.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccC-CceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPY-GKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~-G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
.......++|..+ ++.+.+.+|..+|.+| |.|..+.+. +|||||+|++.+.|.-|.+.||++.|.|+.|.
T Consensus 45 ~~~~~g~~~~~~~-p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHI-PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeeccc-ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 3455678899999 8999999999999998 678888883 68999999999999999999999999999999
Q ss_pred EEEeecC
Q 014331 218 VEYAVRD 224 (426)
Q Consensus 218 v~~a~~~ 224 (426)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9997765
No 132
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.51 E-value=5e-07 Score=67.45 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=49.6
Q ss_pred ccEEEcCCCCCCCHHH----HHHHHhhcC-CeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 56 RPIFCGNFEYDARQSD----LERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~----L~~~F~~~G-~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
..|||.|||.+.+... |++|+..|| +|..| ..+.|+|.|.+++.|..|++.|+|.++ .|..|.|.|.....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDV--FGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--S--SSS--EEESS--S-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhccccc--ccceEEEEEcCCcc
Confidence 4699999999888654 567888885 66665 689999999999999999999999999 79999999985543
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.42 E-value=1.5e-06 Score=76.56 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHcCCCCCC---Cce
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLT---DRV 215 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 215 (426)
.....||||.+| |.++...+|..+|..|-.-+.+.|. +-+|||.|.+.++|++|...|||..|+ +..
T Consensus 31 ~~~VRTLFVSGL-P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGL-PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccC-CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 344789999999 8999999999999999766655553 249999999999999999999999997 899
Q ss_pred EEEEEeecCCCCC
Q 014331 216 ISVEYAVRDDDDR 228 (426)
Q Consensus 216 l~v~~a~~~~~~~ 228 (426)
|++++|+.+....
T Consensus 110 LhiElAKSNtK~k 122 (284)
T KOG1457|consen 110 LHIELAKSNTKRK 122 (284)
T ss_pred eEeeehhcCcccc
Confidence 9999999875443
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.40 E-value=3.5e-07 Score=83.79 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=68.0
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
.......|||+|+.+.+|.++|+.+|+.||.|..|.| ++|||||+|.+.+.++.|+. |||..| .|..|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i--~~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI--PGPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc--ccccce
Confidence 3455789999999999999999999999999987777 38899999999999999995 999999 899999
Q ss_pred EEEeecc
Q 014331 123 VEWTKHE 129 (426)
Q Consensus 123 V~~a~~~ 129 (426)
|.+....
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9987554
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=2.1e-06 Score=67.31 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=58.3
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecC--CCcEEEE
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRY--GKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGR--KGRRLRV 123 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~--~g~~i~V 123 (426)
+||+|.|||...|.++|.+++... |...-+.|+ .|||||.|.+++.|....+.++|..+.. ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999999753 555555552 7999999999999999999999987731 2445566
Q ss_pred EEeec
Q 014331 124 EWTKH 128 (426)
Q Consensus 124 ~~a~~ 128 (426)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66643
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.36 E-value=2.7e-06 Score=84.06 Aligned_cols=72 Identities=26% Similarity=0.427 Sum_probs=63.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--c------CEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--R------NFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
..+|||.|| |.++++.+|+++|..||.|+...|. . .||||+|.+.++++.||++- -..+++++|.|+..+
T Consensus 288 ~~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 345999999 8899999999999999999887773 2 69999999999999999864 888999999999877
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 64
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=3.8e-07 Score=80.07 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=69.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecC------EEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
......||||+|| ...++++-|.++|-+.|.|..|.|+.+ ||||+|+++....-|++.|||..+.+..|.|.+
T Consensus 5 aae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3455789999999 788999999999999999999999743 999999999999999999999999999999988
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
-...
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6654
No 138
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=7.3e-07 Score=88.42 Aligned_cols=69 Identities=33% Similarity=0.494 Sum_probs=63.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE---ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
..+..+|+|.|| +..+++++|..+|+.||+|..|+. ..+.+||+|.+..+|+.|+++|++.+|.|+.|.
T Consensus 72 ~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 556789999999 788999999999999999999877 378999999999999999999999999999988
No 139
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=5.3e-06 Score=62.08 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=49.8
Q ss_pred cEEEEecCCCCCCCHHH----HHHhhccCC-ceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 152 KTLFVINFDPYHTRTRD----LERHFEPYG-KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~----L~~~F~~~G-~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
..|+|.|| |...+... |++++..|| +|..| ..+.|+|.|.+.+.|..|++.|+|..+.|..|.|.|.....
T Consensus 3 s~L~V~NL-P~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNL-PTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES---TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecC-CCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 46999999 77776544 578888887 77666 57899999999999999999999999999999999986543
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.22 E-value=4.7e-06 Score=76.30 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=68.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
....+|+|.|| ++.+.++||+++|..||.++.+.|. .|.|-|.|...++|..|++.+||..++|..+.+...
T Consensus 81 ~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34478999999 7999999999999999988888873 579999999999999999999999999999999987
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
....
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6643
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.18 E-value=1.5e-06 Score=78.19 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=107.1
Q ss_pred ccEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 56 RPIFCGNFEYDARQSD-L--ERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~-L--~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
-.++++|+-..+..+- | ...|+.|-.+...++ ..++||+.|.....-.++...-+++.++ -..|++.-
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~~VR~a~ 174 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIG--KPPVRLAA 174 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccccc--Ccceeecc
Confidence 3456777766665444 3 667777765555444 2789999998887777777666777762 33333322
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQE 197 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~ 197 (426)
..... .............||++.| ...++++.|...|.+|-......+ .+||+||.|.+..
T Consensus 175 gtswe----------dPsl~ew~~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pa 243 (290)
T KOG0226|consen 175 GTSWE----------DPSLAEWDEDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPA 243 (290)
T ss_pred ccccC----------CcccccCccccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHH
Confidence 11111 0111223445679999999 788999999999999876555544 2789999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEee
Q 014331 198 DATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 198 ~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
++..|+..|+|..++.+.|.+....
T Consensus 244 d~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 244 DYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HHHHHHHhhcccccccchhHhhhhh
Confidence 9999999999999999988765443
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.18 E-value=3.8e-06 Score=67.45 Aligned_cols=69 Identities=19% Similarity=0.388 Sum_probs=43.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCC--EEEEEEcChHhHHHHHHhcCCc---eecCCCcEEEEE
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSG--FAFIYMDDERDAEDAIRGLDRT---EFGRKGRRLRVE 124 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g--~aFV~F~~~~~A~~Al~~lng~---~~~~~g~~i~V~ 124 (426)
+.|+|.++...++-++|+++|..||.|..|.+..| .|||-|.++++|+.|++.+.-. .+.+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889999999999999999999999999999865 7999999999999999877544 222245554444
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.13 E-value=4e-05 Score=72.75 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=100.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRY-----GKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~-----G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
.+..|-..+||+..+..+|..+|.-. |.+.++.. ..|.|.|.|.++|.-+.|++ -+...+ .++.|.|.-
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~--g~ryievYk 135 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHM--GTRYIEVYK 135 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhc--cCCceeeec
Confidence 35567788999999999999999753 33333333 37899999999999999994 444444 478888876
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccC-----C--ceEEEEE----ecCEEEEEec
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPY-----G--KIISVRI----RRNFAFVQYE 194 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~-----G--~v~~v~i----~~g~afV~f~ 194 (426)
+.......-.++..............-.|-+.+| |+++++.|+.++|..- | .|..|.- +.|-|||.|.
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGL-Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa 214 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGL-PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFA 214 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCC-CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEec
Confidence 6555433322222211111111222345667899 8999999999999632 2 2334443 3689999999
Q ss_pred CHHHHHHHHHH
Q 014331 195 VQEDATRALDA 205 (426)
Q Consensus 195 ~~~~A~~A~~~ 205 (426)
.+++|+.|+.+
T Consensus 215 ~ee~aq~aL~k 225 (508)
T KOG1365|consen 215 CEEDAQFALRK 225 (508)
T ss_pred CHHHHHHHHHH
Confidence 99999999964
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.13 E-value=3.8e-06 Score=85.30 Aligned_cols=75 Identities=25% Similarity=0.348 Sum_probs=68.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.+.+++|||+|| +..++++.|...|..||+|..|.|+ ..|+||.|.+..||+.|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nl-npsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNL-NPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecC-CccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 456789999999 5678899999999999999999984 5699999999999999999999999999999
Q ss_pred EEEEeec
Q 014331 217 SVEYAVR 223 (426)
Q Consensus 217 ~v~~a~~ 223 (426)
.+.|++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999854
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.13 E-value=7.1e-06 Score=83.11 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=114.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------e-CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------K-SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~-~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.+.+-+.++++++.+.|+.++|--. .|..+.| + .|-++|+|..+.++++|+ .-|...+ -.+.|.|..+
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~--~~R~~q~~P~ 386 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDD--VNRPFQTGPP 386 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhh--hhcceeecCC
Confidence 4556677899999999999998742 2333333 2 789999999999999999 4455544 3777777443
Q ss_pred eccCC--------CCC----------CCCCCCC-----CCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE-E
Q 014331 127 KHERG--------IRR----------PGGGSSA-----RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-V 182 (426)
Q Consensus 127 ~~~~~--------~~~----------~~~~~~~-----~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~-v 182 (426)
....- ... +.+...+ ...........+|||..| |..+++.++.++|...-.|++ |
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccC-Cccccccchhhhhhhhhhhhhee
Confidence 22110 000 0000000 111223445689999999 899999999999998888877 6
Q ss_pred EEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 183 RIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 183 ~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
.|. .+.|||+|..++++..|+...+...++.+.|.|.-.
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 552 469999999999999999877777788888888763
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.04 E-value=1.3e-05 Score=73.45 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
......+||+|+ .+.++.++++.+|+.||.|..+.|+ +||+||+|.+.+.++.|+. |||..|.|..|.|.
T Consensus 98 ~~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 455679999999 5777788899999999999877773 6899999999999999999 99999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98876
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.97 E-value=4.1e-05 Score=60.11 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=60.3
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccC--CceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCC----CceEE
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPY--GKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLT----DRVIS 217 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~--G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 217 (426)
+||.|.|| |...+.++|.+++... |....+.+| .|||||.|.+++.|.+-.+.++|..+. .+.+.
T Consensus 2 TTvMirNI-Pn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNI-PNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecC-CCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 58999999 8999999998888654 555566664 689999999999999999999999986 57788
Q ss_pred EEEeecC
Q 014331 218 VEYAVRD 224 (426)
Q Consensus 218 v~~a~~~ 224 (426)
|.+|+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 8888754
No 148
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.97 E-value=4.9e-06 Score=78.91 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=88.8
Q ss_pred eeeeEEEEecCCchhHHhhhcCCcceecCeecccccch----------hhhhccCCCccEE-EcCCCCCCCHHHHHHHHh
Q 014331 9 QCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLS----------IAAFEVAMMRPIF-CGNFEYDARQSDLERLFR 77 (426)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~-V~nLp~~~te~~L~~~F~ 77 (426)
..+..+++.|+..+++..+|+.....++........+. ..........++| |+||+..+|+++|+.+|.
T Consensus 128 ~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~ 207 (285)
T KOG4210|consen 128 SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV 207 (285)
T ss_pred ccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhcc
Confidence 45678899999999988888877753332211111100 0111223355666 999999999999999999
Q ss_pred hcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 78 RYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 78 ~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.+|.|..|.+. +|||||.|.+...+..|+.. ++..+ .+.++.|++.....
T Consensus 208 ~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 208 SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI--GGRPLRLEEDEPRP 265 (285)
T ss_pred CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc--cCcccccccCCCCc
Confidence 99999999993 89999999999999999966 77777 68999999876654
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.96 E-value=1e-05 Score=72.79 Aligned_cols=71 Identities=20% Similarity=0.449 Sum_probs=60.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...-.||+|.|..+++.+.|-..|.+|-.....++ ++||+||.|.++.++..|+.+|||..+ ..+.|++.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpiklR 265 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKLR 265 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHhh
Confidence 34678999999999999999999999866554444 489999999999999999999999999 47777764
Q ss_pred E
Q 014331 125 W 125 (426)
Q Consensus 125 ~ 125 (426)
-
T Consensus 266 k 266 (290)
T KOG0226|consen 266 K 266 (290)
T ss_pred h
Confidence 3
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.96 E-value=2.3e-05 Score=62.92 Aligned_cols=68 Identities=21% Similarity=0.363 Sum_probs=45.1
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecC--EEEEEecCHHHHHHHHHHcCC-----CCCCCceEEEEE
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNM-----SKLTDRVISVEY 220 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g--~afV~f~~~~~A~~A~~~l~g-----~~~~g~~l~v~~ 220 (426)
..|+|.++ ...++.++|+++|.+||.|.+|.+.+| .|||-|.+.++|+.|+..+.. ..+.+..++++.
T Consensus 2 ~il~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE---SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecC-CCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46888888 677779999999999999999999876 899999999999999987743 356677776665
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.92 E-value=2.2e-05 Score=54.65 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=42.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHH
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAI 106 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al 106 (426)
+.|-|.++++...+. |..+|..||+|..+.+. ..++||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 467888998776644 55589999999999997 889999999999999986
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.83 E-value=1.5e-05 Score=75.35 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=67.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE--------eCCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
.....+|||-+|+..+|+++|.++|.+||.|.. |+| .|+-|.|.|.+...|+.||..+++..|
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf- 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF- 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc-
Confidence 345679999999999999999999999998852 223 389999999999999999999999999
Q ss_pred CCCcEEEEEEeeccC
Q 014331 116 RKGRRLRVEWTKHER 130 (426)
Q Consensus 116 ~~g~~i~V~~a~~~~ 130 (426)
.+..|+|.+|....
T Consensus 142 -~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 -CGNTIKVSLAERRT 155 (351)
T ss_pred -cCCCchhhhhhhcc
Confidence 89999998886554
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.82 E-value=5e-05 Score=71.35 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=66.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEE--------EE-------ecCEEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV--------RI-------RRNFAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v--------~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
..-+..|||.|| |..+|.+++.++|.+||.|..- .| .+|-|.|.|...++..-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgL-P~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGL-PLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCC-CCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344567999999 8899999999999999987532 33 3789999999999999999999999999
Q ss_pred CceEEEEEeecC
Q 014331 213 DRVISVEYAVRD 224 (426)
Q Consensus 213 g~~l~v~~a~~~ 224 (426)
|+.|.|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999998754
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=6.8e-05 Score=70.03 Aligned_cols=75 Identities=17% Similarity=0.388 Sum_probs=62.7
Q ss_pred CCCccEEEcCCCCCCCHHHH------HHHHhhcCCeeEEEEe---------CCEE--EEEEcChHhHHHHHHhcCCceec
Q 014331 53 AMMRPIFCGNFEYDARQSDL------ERLFRRYGKVDRVDMK---------SGFA--FIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L------~~~F~~~G~V~~v~i~---------~g~a--FV~F~~~~~A~~Al~~lng~~~~ 115 (426)
.+..-|||-+|++.+..+++ .++|.+||+|..|.|. .+.+ ||.|.+.++|..||.+.+|..+
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~- 190 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL- 190 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc-
Confidence 44567999999998876662 5799999999999983 2223 9999999999999999999999
Q ss_pred CCCcEEEEEEeecc
Q 014331 116 RKGRRLRVEWTKHE 129 (426)
Q Consensus 116 ~~g~~i~V~~a~~~ 129 (426)
+|+.|+..|...+
T Consensus 191 -DGr~lkatYGTTK 203 (480)
T COG5175 191 -DGRVLKATYGTTK 203 (480)
T ss_pred -cCceEeeecCchH
Confidence 9999999886543
No 155
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00012 Score=50.91 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=42.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHH
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRAL 203 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~ 203 (426)
+.|.|.++ +... .++|..+|..||+|+.+.++ ...+||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf-~~~~-~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF-PPDL-AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE-CchH-HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 46788888 4444 57778899999999999998 789999999999999985
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00024 Score=56.19 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=52.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-------------E--eCCEEEEEEcChHhHHHHHHhcCCceecCCCc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVD-------------M--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 119 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-------------i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~ 119 (426)
..-|.|-++|+. ....|.++|++||+|++.. + ......|.|.++.+|.+|| ..||..| .|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~--~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIF--SGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEE--TTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEE--cCc
Confidence 456888899888 5678889999999998875 3 2678999999999999999 9999999 564
Q ss_pred -EEEEEEeec
Q 014331 120 -RLRVEWTKH 128 (426)
Q Consensus 120 -~i~V~~a~~ 128 (426)
.|-|.+++.
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 555777743
No 157
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00024 Score=70.37 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=57.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHh----cCCceecCCCc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFR-RYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRG----LDRTEFGRKGR 119 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~----lng~~~~~~g~ 119 (426)
...+|||||+||--+|.++|..+|+ -||.|..+-| ++|-|=|.|.+..+-.+||.+ |+..+| .+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~---~K 444 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI---DK 444 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc---ce
Confidence 4578999999999999999999999 7999998887 489999999999999999952 344444 34
Q ss_pred EEEEEE
Q 014331 120 RLRVEW 125 (426)
Q Consensus 120 ~i~V~~ 125 (426)
.|.|+.
T Consensus 445 RVEIkP 450 (520)
T KOG0129|consen 445 RVEIKP 450 (520)
T ss_pred eeeecc
Confidence 555543
No 158
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=4.1e-06 Score=86.90 Aligned_cols=148 Identities=21% Similarity=0.197 Sum_probs=114.2
Q ss_pred CccEEEcCCCCCCCHH-HHHHHHhhcCCeeEEEEeC--------CEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 55 MRPIFCGNFEYDARQS-DLERLFRRYGKVDRVDMKS--------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~-~L~~~F~~~G~V~~v~i~~--------g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...+++.|+.+..... .+...|..+|.|+.|.+.+ .++++++....+++.|. ...+..+ .++.+.|..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~--a~~~~av~~ 647 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGAL--ANRSAAVGL 647 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-ccccccc--CCccccCCC
Confidence 4567788888877765 5778899999999999953 37899999999999999 7888888 588888877
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQE 197 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~ 197 (426)
+......... ...........++||.|| +..+.+.+|...|..+|.|..+++ .+|+|||+|...+
T Consensus 648 ad~~~~~~~~------kvs~n~~R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~ 720 (881)
T KOG0128|consen 648 ADAEEKEENF------KVSPNEIRDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPE 720 (881)
T ss_pred CCchhhhhcc------CcCchHHHHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCC
Confidence 7655421111 111122234468999999 677779999999999998877666 3799999999999
Q ss_pred HHHHHHHHcCCCCCC
Q 014331 198 DATRALDATNMSKLT 212 (426)
Q Consensus 198 ~A~~A~~~l~g~~~~ 212 (426)
+|.+||....++.++
T Consensus 721 ~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 721 HAGAAVAFRDSCFFG 735 (881)
T ss_pred chhhhhhhhhhhhhh
Confidence 999999877766665
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.49 E-value=4.8e-05 Score=68.90 Aligned_cols=57 Identities=23% Similarity=0.495 Sum_probs=48.6
Q ss_pred HHHHHHHh-hcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 70 SDLERLFR-RYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 70 ~~L~~~F~-~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
++|...|+ +||+|+++.| ..|-+||.|..+++|++|++.|||..| .|++|.+++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceeeecCc
Confidence 44445555 8999999987 378999999999999999999999999 799999998743
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.49 E-value=8.7e-05 Score=74.27 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=66.2
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceec-CCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFR-RYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFG-RKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~-~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~-~~g~~i~V~~a~~ 128 (426)
...+.|||.||-.-.|.-+|+.|+. .+|.|++++| .+-.|||.|.+.++|.+.+.+|||+.+. .+.+.|.|.|...
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 3478999999999999999999999 6788888888 4889999999999999999999998774 2567788887754
Q ss_pred c
Q 014331 129 E 129 (426)
Q Consensus 129 ~ 129 (426)
.
T Consensus 522 d 522 (718)
T KOG2416|consen 522 D 522 (718)
T ss_pred h
Confidence 3
No 161
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.49 E-value=0.0001 Score=77.25 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=71.4
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
...++.|||++|...+....|...|..||.|..|.+- .-||||.|++...|+.|++.|-|..||--.+.|.|.|+...
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 3557899999999999999999999999999999996 45999999999999999999999999866678999998765
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 532 ~ 532 (975)
T KOG0112|consen 532 G 532 (975)
T ss_pred C
Confidence 5
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.43 E-value=0.00034 Score=65.48 Aligned_cols=76 Identities=25% Similarity=0.457 Sum_probs=61.6
Q ss_pred CCCcEEEEecCCCCCCCHH---HH--HHhhccCCceEEEEEec---------C--EEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 149 RPSKTLFVINFDPYHTRTR---DL--ERHFEPYGKIISVRIRR---------N--FAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~---~L--~~~F~~~G~v~~v~i~~---------g--~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
...+-+||.+|+|....|+ .| .++|.+||.|..|.|.+ + -.||+|.+.++|..||..++|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3345689999966555554 23 58999999999999953 2 3499999999999999999999999
Q ss_pred CceEEEEEeecC
Q 014331 213 DRVISVEYAVRD 224 (426)
Q Consensus 213 g~~l~v~~a~~~ 224 (426)
|+.|...|...+
T Consensus 192 Gr~lkatYGTTK 203 (480)
T COG5175 192 GRVLKATYGTTK 203 (480)
T ss_pred CceEeeecCchH
Confidence 999999996653
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.41 E-value=9.8e-05 Score=71.28 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=55.3
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------------------CCEEEEEEcChHhHHHHHHhcC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------------------SGFAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------------------~g~aFV~F~~~~~A~~Al~~ln 110 (426)
+-+.++|.+.|||.+-.-+.|.+||+.||.|..|.|- +-+|||+|...+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3468999999999998889999999999999999991 4589999999999999998886
Q ss_pred Ccee
Q 014331 111 RTEF 114 (426)
Q Consensus 111 g~~~ 114 (426)
....
T Consensus 308 ~e~~ 311 (484)
T KOG1855|consen 308 PEQN 311 (484)
T ss_pred hhhh
Confidence 5443
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00031 Score=70.05 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=61.1
Q ss_pred CCCccEEEcCCCCCCC------HHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCc
Q 014331 53 AMMRPIFCGNFEYDAR------QSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 119 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~t------e~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~ 119 (426)
.-...|+|-|+|.--. ..-|..+|+++|+|+.+.++ +||+|++|+++.+|+.|++.|||..|. +.+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld-knH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD-KNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec-ccc
Confidence 4467899999985322 23466899999999999984 899999999999999999999999886 778
Q ss_pred EEEEEEeec
Q 014331 120 RLRVEWTKH 128 (426)
Q Consensus 120 ~i~V~~a~~ 128 (426)
++.|..-+.
T Consensus 135 tf~v~~f~d 143 (698)
T KOG2314|consen 135 TFFVRLFKD 143 (698)
T ss_pred eEEeehhhh
Confidence 888865433
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.34 E-value=0.00086 Score=56.26 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=48.6
Q ss_pred HHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 70 SDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 70 ~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
.+|.+.|..||+|.-|++--+.-+|+|.+-+.|.+|+ .|+|..| .|+.|+|.+..+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v--~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQV--NGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEE--TTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEE--CCEEEEEEeCCc
Confidence 4788899999999999998999999999999999999 9999999 799999987644
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.30 E-value=9.7e-05 Score=66.95 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=50.6
Q ss_pred HHHHHhhc-cCCceEEEEE-------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 167 RDLERHFE-PYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 167 ~~L~~~F~-~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
+||...|+ +||+|+.+.| ..|.+||.|...++|++|++.||+.+|.|++|..++....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555666 9999999977 3689999999999999999999999999999999997654
No 167
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.25 E-value=0.00083 Score=68.59 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=61.0
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....+.|-|.|+|++++.+||.++|..|-.+ .+|.| +.|-|.|.|++.++|..|...|++..| ..++|+|
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i--~nr~V~l 941 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI--RNRVVSL 941 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc--cceeEEE
Confidence 3445689999999999999999999999655 34555 478999999999999999999999999 5888877
Q ss_pred EE
Q 014331 124 EW 125 (426)
Q Consensus 124 ~~ 125 (426)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 53
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.21 E-value=0.0014 Score=55.09 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=55.7
Q ss_pred CCCCCcEEEEecCC---CC--CCC---HHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFD---PY--HTR---TRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~---p~--~~~---~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
..++..||.|.=+. +. ... -.+|.+.|..||+|.-+++..+.-+|+|.+-+.|.+|+. |+|.+++|+.|+|
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 34566777776552 11 111 136788999999999999999999999999999999997 8999999999999
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
....++
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 987653
No 169
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.13 E-value=0.00034 Score=66.42 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=66.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE--------EEE--------ecCEEEEEecCHHHHHHHHHHcCCCCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRI--------RRNFAFVQYEVQEDATRALDATNMSKL 211 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~ 211 (426)
.....+|||-+| +..+++.+|.++|.++|.|.. |+| +|+-|.|.|.+...|+.||..+++..|
T Consensus 63 ~s~~~ti~v~g~-~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGC-PDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeecc-CccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 445678999999 788889999999999998743 222 378999999999999999999999999
Q ss_pred CCceEEEEEeecCC
Q 014331 212 TDRVISVEYAVRDD 225 (426)
Q Consensus 212 ~g~~l~v~~a~~~~ 225 (426)
.|..|+|.+|....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999988754
No 170
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.12 E-value=0.0011 Score=60.17 Aligned_cols=98 Identities=28% Similarity=0.313 Sum_probs=77.2
Q ss_pred HhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCce
Q 014331 100 RDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI 179 (426)
Q Consensus 100 ~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v 179 (426)
.-|+.|..+|++... .|+.|.|-|+.. ..|+|.|| ...+..+.|.+.|..||.|
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~~-----------------------a~l~V~nl-~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAMH-----------------------AELYVVNL-MQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeecc-----------------------ceEEEEec-chhhhhHHHHHhhhhcCcc
Confidence 347778889999999 899999999854 36999999 6777789999999999998
Q ss_pred EEEEE-------ecCEEEEEecCHHHHHHHHHHcCCCC----CCCceEEEEEeec
Q 014331 180 ISVRI-------RRNFAFVQYEVQEDATRALDATNMSK----LTDRVISVEYAVR 223 (426)
Q Consensus 180 ~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~----~~g~~l~v~~a~~ 223 (426)
....+ +.+-++|+|...-.|.+|+..+...- ..+...-|+....
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq 113 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQ 113 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhc
Confidence 76554 35689999999999999998874322 3356666665443
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.09 E-value=0.0024 Score=47.98 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=45.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 111 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng 111 (426)
....||+ +|..+...||.+||+.||.|.--.|.-.-|||...+.+.|..|+..++-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 3455665 9999999999999999999988888899999999999999999988763
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.03 E-value=0.00063 Score=68.33 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=66.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhc-cCCceEEEEE--ecCEEEEEecCHHHHHHHHHHcCCCCCC---CceEEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFE-PYGKIISVRI--RRNFAFVQYEVQEDATRALDATNMSKLT---DRVISVEY 220 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~-~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~ 220 (426)
-...++.|+|.|| -.-.|.-+|+.++. .+|.|+..|| .+..|||.|.+.++|.+.+.+|||..|- ++.|.+.|
T Consensus 440 R~~~SnvlhI~nL-vRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNL-VRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecc-cccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4566789999999 68888999999999 6677877777 5889999999999999999999998884 68999999
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
+...
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8764
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.02 E-value=0.00089 Score=64.82 Aligned_cols=65 Identities=31% Similarity=0.430 Sum_probs=55.5
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---------------------cCEEEEEecCHHHHHHHHHH
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------------------RNFAFVQYEVQEDATRALDA 205 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---------------------~g~afV~f~~~~~A~~A~~~ 205 (426)
...+..+|.+.|| |..-.-+.|.++|..+|.|..|.|- +-+|+|+|+..+.|.+|.+.
T Consensus 227 eel~srtivaenL-P~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENL-PLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecC-CcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 3467899999999 7777789999999999999999992 23899999999999999998
Q ss_pred cCCCCCC
Q 014331 206 TNMSKLT 212 (426)
Q Consensus 206 l~g~~~~ 212 (426)
|+...-.
T Consensus 306 ~~~e~~w 312 (484)
T KOG1855|consen 306 LNPEQNW 312 (484)
T ss_pred hchhhhh
Confidence 8654433
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.01 E-value=0.00044 Score=62.62 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=55.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------------------C--CEEEEEEcChHhHHHHHHhcCCce
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------------------S--GFAFIYMDDERDAEDAIRGLDRTE 113 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------------------~--g~aFV~F~~~~~A~~Al~~lng~~ 113 (426)
.+..||++|||+.+...-|+++|+.||+|-.|.|. . .-|.|+|.+-..|..+.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999999992 1 137899999999999999999999
Q ss_pred ec
Q 014331 114 FG 115 (426)
Q Consensus 114 ~~ 115 (426)
||
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 95
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.98 E-value=0.0015 Score=60.26 Aligned_cols=57 Identities=28% Similarity=0.312 Sum_probs=49.6
Q ss_pred HHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 166 TRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 166 ~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
++++++.+++||+|..|.|. .--.||+|+..++|.+|+-.|||..|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46678899999999998883 2268999999999999999999999999999887754
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.93 E-value=0.0022 Score=59.22 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 69 QSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 69 e~~L~~~F~~~G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
++++++.+++||.|..|.|. .--.||+|...++|.+|+-.|||..| .|+.+...|.+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeeheeccHHh
Confidence 56788899999999998883 33589999999999999999999999 59999988875543
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0031 Score=63.18 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCcEEEEecCCCCCCC------HHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCC-Cce
Q 014331 150 PSKTLFVINFDPYHTR------TRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLT-DRV 215 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~------~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~ 215 (426)
-...|+|.|+ |-.-. ...|..+|+++|+|+.+.+| +|+.|++|++..+|+.|++.|||..|+ .++
T Consensus 57 ~D~vVvv~g~-PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGA-PVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCC-cccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3567888888 43221 23467899999999999997 789999999999999999999999987 677
Q ss_pred EEEEEe
Q 014331 216 ISVEYA 221 (426)
Q Consensus 216 l~v~~a 221 (426)
+.|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777653
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.82 E-value=0.0048 Score=51.10 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=60.0
Q ss_pred ccCCCccEEEcCCCCCCC----HHHHHHHHhhcCCeeEEEEe-CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 51 EVAMMRPIFCGNFEYDAR----QSDLERLFRRYGKVDRVDMK-SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~t----e~~L~~~F~~~G~V~~v~i~-~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
.+.++.||.|.=|..++. ...|.+.++.||+|..|.+- +.-|.|.|.+..+|-+|+.+++...- |..+.+.|
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~p---gtm~qCsW 158 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRAP---GTMFQCSW 158 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCCCC---CceEEeec
Confidence 456688999987776654 23455566789999999984 78899999999999999999987554 89999988
Q ss_pred eec
Q 014331 126 TKH 128 (426)
Q Consensus 126 a~~ 128 (426)
...
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 643
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.78 E-value=0.004 Score=49.28 Aligned_cols=69 Identities=25% Similarity=0.418 Sum_probs=51.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEE-------------Ee--cCEEEEEecCHHHHHHHHHHcCCCCCCCce
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVR-------------IR--RNFAFVQYEVQEDATRALDATNMSKLTDRV 215 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~-------------i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 215 (426)
..-|.|.++ |... ...|.++|++||+|+... ++ .+...|.|.+..+|++||. .||..|.|..
T Consensus 6 ~~wVtVFGf-p~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGF-PPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE----GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEcc-CHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 456888899 4444 788999999999998885 33 4699999999999999997 6999998854
Q ss_pred -EEEEEee
Q 014331 216 -ISVEYAV 222 (426)
Q Consensus 216 -l~v~~a~ 222 (426)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4566653
No 180
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.60 E-value=0.0015 Score=64.00 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=53.1
Q ss_pred CCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 162 YHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 162 ~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
...+-++|..+|.+||+|..|.+- ...|.|+|.+..+|-.|.. .++..|+++.|+|.|-..
T Consensus 383 glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 383 GLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred CCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344578999999999999999884 4689999999999988774 799999999999999876
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.18 E-value=0.0035 Score=56.92 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=56.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec--------------------CEEEEEecCHHHHHHHHHHcCCC
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--------------------NFAFVQYEVQEDATRALDATNMS 209 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~--------------------g~afV~f~~~~~A~~A~~~l~g~ 209 (426)
....||++|| |-.+...-|+++|.+||.|-.|.|.. .-|+|+|.+...|..+...||+.
T Consensus 73 k~GVvylS~I-Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNI-PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccC-CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999 55666999999999999999999931 15889999999999999999999
Q ss_pred CCCCce
Q 014331 210 KLTDRV 215 (426)
Q Consensus 210 ~~~g~~ 215 (426)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999864
No 182
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.17 E-value=0.032 Score=41.67 Aligned_cols=66 Identities=24% Similarity=0.439 Sum_probs=41.6
Q ss_pred cEEEcCCC--CCCCHHHHHHHHhhcCC-----eeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 57 PIFCGNFE--YDARQSDLERLFRRYGK-----VDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 57 ~l~V~nLp--~~~te~~L~~~F~~~G~-----V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
+||| |+- ..++..+|..++...+. |-.|.|...|+||+-... .|..++..|++..+ .|+.|.|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKI--KGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--S--SS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCC--CCeeEEEEEC
Confidence 4555 443 46889999999987654 558888999999999654 78889999999999 8999999865
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.16 E-value=0.034 Score=46.18 Aligned_cols=76 Identities=22% Similarity=0.303 Sum_probs=59.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHH---HhhccCCceEEEEEe-cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLE---RHFEPYGKIISVRIR-RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~---~~F~~~G~v~~v~i~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
...++..+|.|.-|.......+||+ ..++.||+|..|.+- +..|.|.|.+...|.+|+.+++. ...|..+.+.|-
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3467788999987743334456654 556789999999985 77999999999999999999876 566888888775
Q ss_pred e
Q 014331 222 V 222 (426)
Q Consensus 222 ~ 222 (426)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.97 E-value=0.044 Score=39.13 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=42.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEE-eCCEEEEEEcChHhHHHHHHhc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRY----GKVDRVDM-KSGFAFIYMDDERDAEDAIRGL 109 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~----G~V~~v~i-~~g~aFV~F~~~~~A~~Al~~l 109 (426)
...|+|.++ .+++.++|+.+|..| ++. .|.. .-.-|-|.|.+.+.|..||.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~-~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPF-RIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCc-eEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 357999998 458889999999999 543 4444 4567889999999999999765
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.95 E-value=0.0048 Score=60.64 Aligned_cols=73 Identities=15% Similarity=0.340 Sum_probs=61.9
Q ss_pred CccEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 55 MRPIFCGNFEYDA-RQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 55 ~~~l~V~nLp~~~-te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.+.|-+.-++..+ |.++|..+|.+||+|..|.+. .-.|.|+|.+..+|-.|. ...+..| +++.|+|.|.+...
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avl--nnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-cccccee--cCceeEEEEecCCc
Confidence 4566666667665 468999999999999999984 468999999999998888 8899999 89999999998744
No 186
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.70 E-value=0.0057 Score=62.59 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=62.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..+..+|||+||...+..+-+..+...||-|..+..-+ |+|++|..+.-+..|+..|+-..+ +|..|.+..-
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~--~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNI--DDQKLIENVD 108 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCC--Ccchhhccch
Confidence 35578999999999999999999999999998877755 999999999999999988888888 6777766553
No 187
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.62 E-value=0.01 Score=56.05 Aligned_cols=68 Identities=15% Similarity=0.319 Sum_probs=56.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGK--VDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~--V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
..++|||||-+.+|.+||.+.+...|- |.++++ +||||+|...+....++.++.|-.+.| +|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i--HGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI--HGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee--cCCCCeee
Confidence 568999999999999999998887663 444444 599999999999999999999999999 68765553
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.53 E-value=0.074 Score=37.98 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=42.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccC----CceEEEEE-ecCEEEEEecCHHHHHHHHHHc
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPY----GKIISVRI-RRNFAFVQYEVQEDATRALDAT 206 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~----G~v~~v~i-~~g~afV~f~~~~~A~~A~~~l 206 (426)
...|+|.+++ .++.+||+.+|..| +.. .|.. .-.-|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd--~lsT~dI~~y~~~y~~~~~~~-~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD--ELSTDDIKAYFSEYFDEEGPF-RIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC--CCCHHHHHHHHHHhcccCCCc-eEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 3579999994 56689999999999 543 4444 4568999999999999999765
No 189
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.12 E-value=0.024 Score=55.06 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=60.2
Q ss_pred cEEEEecCCCCCCCHHHHHHhhcc--CCceEEEEEecCEEEEEecCHHHHHHHHHHcCCC-CCCCceEEEEEeecC
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEP--YGKIISVRIRRNFAFVQYEVQEDATRALDATNMS-KLTDRVISVEYAVRD 224 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~--~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~a~~~ 224 (426)
+.||++|| ....+..||..+|.. .+.-..+-+..||+||.+.+...|.+|++.++|. ++.|..+.|++...+
T Consensus 2 nklyignL-~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred Cccccccc-CCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 46899999 566779999999974 3444566677899999999999999999999985 567999999997765
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.07 E-value=0.064 Score=47.53 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=45.6
Q ss_pred CHHHHHHHHhhcCCeeEEEEeC--CEEEEEEcChHhHHHHHHhcC--CceecCCCcEEEEEEeeccC
Q 014331 68 RQSDLERLFRRYGKVDRVDMKS--GFAFIYMDDERDAEDAIRGLD--RTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 68 te~~L~~~F~~~G~V~~v~i~~--g~aFV~F~~~~~A~~Al~~ln--g~~~~~~g~~i~V~~a~~~~ 130 (426)
..+.|+++|..|+.+..+.+-+ +=..|.|.+.++|..|...|+ +..| .|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEccccc
Confidence 4588999999999998887744 458999999999999999999 8999 79999999985443
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.04 E-value=0.12 Score=38.99 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=44.4
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCC
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g 208 (426)
...+|. + |......||.++|..||.|.--+|.-.-|||.+.+.+.|..|+..++-
T Consensus 10 HVFhlt-F-PkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-F-PKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE----TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-C-chHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhcc
Confidence 344555 8 677778999999999999999999999999999999999999888753
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.01 E-value=0.11 Score=48.52 Aligned_cols=72 Identities=18% Similarity=0.148 Sum_probs=54.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCc-EEEEEEeeccC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR-RLRVEWTKHER 130 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~-~i~V~~a~~~~ 130 (426)
..=|-|-++++..+ ..|..+|++||+|+.+... -.+-+|.|.+..+|++|| ..||+.| +|. .|-|..+..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii--~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTII--DGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeee--ccceEEeeeecCCHH
Confidence 34466778877644 5677899999999988884 458999999999999999 8999999 343 34455554443
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.89 E-value=0.029 Score=49.44 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=50.6
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEEE----------eCCEEEEEEcChHhHHHHHHhcCCceec-CCC
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRR-YGKV---DRVDM----------KSGFAFIYMDDERDAEDAIRGLDRTEFG-RKG 118 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~V---~~v~i----------~~g~aFV~F~~~~~A~~Al~~lng~~~~-~~g 118 (426)
...+|.|.+||+.+|++++.+.+.. ++.. ..+.- .-.-|||.|.+.+++...+..++|..|. -.|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999999987776 6655 33331 1346999999999999999999998773 112
Q ss_pred --cEEEEEEeecc
Q 014331 119 --RRLRVEWTKHE 129 (426)
Q Consensus 119 --~~i~V~~a~~~ 129 (426)
....|++|...
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 24457777553
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.79 E-value=0.009 Score=56.62 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=59.0
Q ss_pred CccEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeC-----------CEEEEEEcChHhHHHHHHhcCCceecCCCcE
Q 014331 55 MRPIFCGNFEYDARQSDLE---RLFRRYGKVDRVDMKS-----------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~---~~F~~~G~V~~v~i~~-----------g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~ 120 (426)
..-+||-+|+..+..+.+. +.|.+||.|..|.+.+ .-+||+|...++|..||...+|+.+ +|+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~--dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD--DGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh--hhhh
Confidence 4567888998877655543 5899999999998842 2489999999999999999999999 8999
Q ss_pred EEEEEeecc
Q 014331 121 LRVEWTKHE 129 (426)
Q Consensus 121 i~V~~a~~~ 129 (426)
|++.+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 887776543
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.56 E-value=0.05 Score=54.72 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=55.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEe-CCEEEEEEcChHhHHHHHHhcCC--ceecCCCcEEEEE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRR--YGKVDRVDMK-SGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVE 124 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~--~G~V~~v~i~-~g~aFV~F~~~~~A~~Al~~lng--~~~~~~g~~i~V~ 124 (426)
-|.|.|.-||..+-+|+|+.||.. |-++.+|.+- ..-=||+|++..||+.|.+.|.. +.| .|+.|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~f--qgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTF--QGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhh--cCcchhhh
Confidence 578889999999999999999974 8889999884 55679999999999999987754 344 56666543
No 196
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.55 E-value=0.18 Score=37.55 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCCCHHHHHHhhccCC-----ceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 162 YHTRTRDLERHFEPYG-----KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 162 ~~~~~~~L~~~F~~~G-----~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
..++..+|..++...+ .|-.|.|...|+||+-... .|..++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566888888777654 5778999999999998764 788999999999999999999875
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.51 E-value=0.024 Score=59.60 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=64.0
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
+.++-|.+-.+|-.-|..||..||.|.++++- -..|.|+|...+.|..|+++|+|+++-..|-+.+|.+++...
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 44555666678889999999999999999984 568999999999999999999999887778999999987654
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.36 E-value=0.1 Score=52.51 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=53.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcc--CCceEEEEEe-cCEEEEEecCHHHHHHHHHHcCC--CCCCCceEEEEE
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEP--YGKIISVRIR-RNFAFVQYEVQEDATRALDATNM--SKLTDRVISVEY 220 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~--~G~v~~v~i~-~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~ 220 (426)
-+.|++..| +..+..++|+.||.. |-+++.|.+. ..-=||+|++..||+.|.+.|.. +.|.|+.|...+
T Consensus 175 RcIvilREI-pettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREI-PETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeec-CCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 356777888 889989999999974 7899999885 56779999999999999887632 445566554433
No 199
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.20 E-value=0.044 Score=51.97 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=55.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCC--ceEEEEE--------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G--~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
....++||+|| .|++|++||.+.+...| .+.++++ .+|||+|...+....++.++.|-...|.|..-.|
T Consensus 78 Grk~~~YvGNL-~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNL-LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecce-eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33468999999 78888999988877666 3333333 3789999999999999999999999999876555
Q ss_pred E
Q 014331 219 E 219 (426)
Q Consensus 219 ~ 219 (426)
-
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 4
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.08 E-value=1.6 Score=40.97 Aligned_cols=151 Identities=14% Similarity=0.204 Sum_probs=94.2
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------------CCEEEEEEcChHhHHHHH----HhcCC--
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------------SGFAFIYMDDERDAEDAI----RGLDR-- 111 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------------~g~aFV~F~~~~~A~~Al----~~lng-- 111 (426)
-.++.|.+.||...++-..+...|.+||+|+.|.|- .....+.|-+.+.+.... +.|+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999999999999993 256889999988876533 23332
Q ss_pred ceecCCCcEEEEEEeeccCCCCC--CCCCC-------C-CCCCCCCCCCCcEEEEecCCCCCCCHHHH-HH---hhccCC
Q 014331 112 TEFGRKGRRLRVEWTKHERGIRR--PGGGS-------S-ARRPSTNTRPSKTLFVINFDPYHTRTRDL-ER---HFEPYG 177 (426)
Q Consensus 112 ~~~~~~g~~i~V~~a~~~~~~~~--~~~~~-------~-~~~~~~~~~~~~~l~v~nl~p~~~~~~~L-~~---~F~~~G 177 (426)
+.+ +...|.|.|..-...... ..... . ....-.....+..|.|. + ...+..++| .+ +...-+
T Consensus 93 ~~L--~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F-~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 93 TKL--KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-F-KDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred Hhc--CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-e-cCccchhHHHHHhhhhhccCC
Confidence 233 567778877654221111 00000 0 00111223445566664 3 133323333 22 222223
Q ss_pred ----ceEEEEE----------ecCEEEEEecCHHHHHHHHHHcC
Q 014331 178 ----KIISVRI----------RRNFAFVQYEVQEDATRALDATN 207 (426)
Q Consensus 178 ----~v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~ 207 (426)
.|+.|.+ ++.||.++|-+...|...++.|.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2555666 36799999999999999998775
No 201
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.00 E-value=0.044 Score=49.98 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=55.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCC--ceecCCCcEEEEEEe
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVEWT 126 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng--~~~~~~g~~i~V~~a 126 (426)
..|||.||...+.-+.|.+-|..||+|....+ ..+-++|+|...-.|.+|+..++- ..+...+.+.-|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999975433 367899999999999999987743 222224555555443
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.87 E-value=0.02 Score=54.38 Aligned_cols=73 Identities=22% Similarity=0.360 Sum_probs=57.7
Q ss_pred cEEEEecCCCCCCCHHHHH--HhhccCCceEEEEEecC-----------EEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 152 KTLFVINFDPYHTRTRDLE--RHFEPYGKIISVRIRRN-----------FAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~--~~F~~~G~v~~v~i~~g-----------~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
.-+||.+|++....+..|+ +.|.+||.|..|.+.++ -++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4567777844444455553 67999999999988542 5899999999999999999999999999888
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=0.17 Score=47.37 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=49.5
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec--CEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--NFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~--g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.=|.|.+++|.. -.-|..+|.+||+|++..... ++.+|.|.+.-+|++||. .||+.|+|..+
T Consensus 198 ~WVTVfGFppg~--~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ--VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccc--hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 446677784433 467889999999999988863 489999999999999997 58988887543
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.44 E-value=0.38 Score=38.83 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=42.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRY-GKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
..+.+...|..++.++|..+.+.+ ..|..++|- +-.+.|+|.++++|....+.+||+.|
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344444555555666776666655 356677772 34789999999999999999999988
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.87 E-value=0.22 Score=44.17 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHHHhhccCCceEEEEEecC--EEEEEecCHHHHHHHHHHcC--CCCCCCceEEEEEeecC
Q 014331 166 TRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATN--MSKLTDRVISVEYAVRD 224 (426)
Q Consensus 166 ~~~L~~~F~~~G~v~~v~i~~g--~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~~~ 224 (426)
.+.|+++|..|+.+..+.+.+. -..|.|.+.++|..|...|+ +..+.|..|.|.|+...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 6889999999999888888765 57899999999999999999 99999999999998543
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.50 E-value=0.25 Score=38.06 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=47.6
Q ss_pred EEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHH
Q 014331 92 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLER 171 (426)
Q Consensus 92 aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~ 171 (426)
|+|+|.++.-|+..+ .+....+.+++..+.|........... ...-.......+|.|.|| |....+++|++
T Consensus 1 AlITF~e~~VA~~i~-~~~~~~v~l~~~~~~V~v~P~~~~~~~-------k~qv~~~vs~rtVlvsgi-p~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRIL-KKKKHPVPLEDCCVRVKVSPVTLGHLQ-------KFQVFSGVSKRTVLVSGI-PDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHH-hCCEEEEEECCEEEEEEEEeEecCCce-------EEEEEEcccCCEEEEeCC-CCCCChhhhee
Confidence 789999999999988 555444444666666655433221100 011122455689999999 67888999987
Q ss_pred hhc
Q 014331 172 HFE 174 (426)
Q Consensus 172 ~F~ 174 (426)
..+
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 653
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.11 E-value=2.7 Score=33.89 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=46.6
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEEecC------EEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i~~g------~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
..|.|--++++.++.++|..+.+.+- .|..++|.+. .+.|+|.+.++|..-...+||+.|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444444478887888877777665 5667777532 7889999999999999999999987
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.93 E-value=0.13 Score=53.09 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=64.3
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
....++..+|||+|+ .+.+.++-++.+...||.|..+...+ |+|.+|..+..+..|+..++-..++|..+.+..
T Consensus 34 ~~~~~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccCCCCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 344667789999999 78887888899999999998887766 999999999999999999999999988887766
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.64 E-value=0.94 Score=32.86 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 66 DARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 66 ~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.++-++|+..+..|+- ..|...+---||.|.+..+|+++....+|..+ .+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~--f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLF--FTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEE--EEEEEEe
Confidence 5778999999999964 55666555568999999999999999999988 4555543
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.45 E-value=0.93 Score=32.88 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 161 p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...++-++|+..+..|+- ..|..-+.--||.|.+..+|+++....+|..+.+..|.+
T Consensus 9 ~~~~~v~d~K~~Lr~y~~-~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 9 VHGVTVEDFKKRLRKYRW-DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCccHHHHHHHHhcCCc-ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 345678999999999963 455566666799999999999999999999988877765
No 211
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=0.96 Score=46.15 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=63.2
Q ss_pred cCCCccEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEE-----------------e---------------------
Q 014331 52 VAMMRPIFCGNFEYD-ARQSDLERLFRRY----GKVDRVDM-----------------K--------------------- 88 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~----G~V~~v~i-----------------~--------------------- 88 (426)
...++.|-|.||.++ +...+|.-+|..| |.|..|.| +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999984 7889999999976 68999988 1
Q ss_pred -----------------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 89 -----------------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 89 -----------------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
-=||.|+|.+.+.|.+..+.++|..|..-+..|-+.|-..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 0289999999999999999999999976666777766533
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=90.40 E-value=0.2 Score=42.87 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHh----hcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCC
Q 014331 66 DARQSDLERLFR----RYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSA 141 (426)
Q Consensus 66 ~~te~~L~~~F~----~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~ 141 (426)
.++-..|.+.+. ..|.+.-..|..++..++|.+.+++..++ ......| .|..|.++.-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl-~~~p~~~--~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVL-KGGPWNF--NGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEE-ecccccc--cccchhhhhhcccccccc-------
Confidence 345555555444 45666666677999999999999999888 4444455 677777665443221000
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe
Q 014331 142 RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 185 (426)
Q Consensus 142 ~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~ 185 (426)
.......-=|.|.||+....+++-|+.+.+.+|++..++..
T Consensus 98 ---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 98 ---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred ---cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 00011122356779966667788999999999999998874
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.92 E-value=1.6 Score=44.61 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=62.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccC----CceEEEEEe----------------c---------------------
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPY----GKIISVRIR----------------R--------------------- 186 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~----G~v~~v~i~----------------~--------------------- 186 (426)
...++.|-|.||+...+...||..+|..| |.|..|.|- .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 56678999999987788899999988865 589998881 0
Q ss_pred ------------------CEEEEEecCHHHHHHHHHHcCCCCCC--CceEEEEEeec
Q 014331 187 ------------------NFAFVQYEVQEDATRALDATNMSKLT--DRVISVEYAVR 223 (426)
Q Consensus 187 ------------------g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~ 223 (426)
=||.|+|.+.+.|.+....++|..|. +..|-+.|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 18999999999999999999999998 55566666443
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.52 E-value=0.28 Score=51.96 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=60.5
Q ss_pred CCCcEEEEecCCCC-----------CCCHHHHHHhhccCCceEEEEEec--CEEEEEecCHHHHHHHHHHcCCCCCC--C
Q 014331 149 RPSKTLFVINFDPY-----------HTRTRDLERHFEPYGKIISVRIRR--NFAFVQYEVQEDATRALDATNMSKLT--D 213 (426)
Q Consensus 149 ~~~~~l~v~nl~p~-----------~~~~~~L~~~F~~~G~v~~v~i~~--g~afV~f~~~~~A~~A~~~l~g~~~~--g 213 (426)
.+..++-|.|+-|. ..+-..|..+|..||.|..++..+ ..|.|+|...+.|..|+++|+|.++- |
T Consensus 284 ~ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g 363 (1007)
T KOG4574|consen 284 LPTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTG 363 (1007)
T ss_pred cccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccC
Confidence 44556666665333 333456889999999999999965 48999999999999999999998865 8
Q ss_pred ceEEEEEeecC
Q 014331 214 RVISVEYAVRD 224 (426)
Q Consensus 214 ~~l~v~~a~~~ 224 (426)
-..+|.+|+.-
T Consensus 364 ~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 364 APSRVSFAKTL 374 (1007)
T ss_pred CceeEEecccc
Confidence 88999999864
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.08 E-value=2.3 Score=42.21 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=52.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRY-GKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
...|+|-.+|..+|-.||..|...| -.|.+|+|- +=.++|+|.+.++|....+.+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7789999999999999999998865 457778772 336899999999999999999999883
No 216
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=85.72 E-value=3.7 Score=39.23 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=6.4
Q ss_pred CCCCHHHHHHhh
Q 014331 162 YHTRTRDLERHF 173 (426)
Q Consensus 162 ~~~~~~~L~~~F 173 (426)
+.+++++|.++.
T Consensus 211 Fd~~k~eid~ic 222 (367)
T KOG0835|consen 211 FDTTKREIDEIC 222 (367)
T ss_pred cCCcHHHHHHHH
Confidence 445566665543
No 217
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.09 E-value=0.96 Score=39.88 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=49.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhcc-CCce---EEEE--Ee--------cCEEEEEecCHHHHHHHHHHcCCCCCCC---
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEP-YGKI---ISVR--IR--------RNFAFVQYEVQEDATRALDATNMSKLTD--- 213 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~-~G~v---~~v~--i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 213 (426)
...|.|.+| |..++++++.+.+.. ++.. ..+. +. -.-|||.|.+.+++..-...++|..|.+
T Consensus 7 ~~KvVIR~L-PP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRL-PPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCC-CCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 458999999 667779999998887 6655 2333 11 1379999999999999999999977653
Q ss_pred --ceEEEEEeec
Q 014331 214 --RVISVEYAVR 223 (426)
Q Consensus 214 --~~l~v~~a~~ 223 (426)
....|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456777765
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.50 E-value=6.4 Score=39.21 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=52.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEEecC------EEEEEecCHHHHHHHHHHcCCCCCCC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIRRN------FAFVQYEVQEDATRALDATNMSKLTD 213 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i~~g------~afV~f~~~~~A~~A~~~l~g~~~~g 213 (426)
+..|+|-.+ |..++-.||..|+..|- .|.+|.|.+. .+.|+|.+.++|..-.+.+||..|..
T Consensus 74 ~~mLcilaV-P~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAV-PAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEec-cccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 778889889 78888999999988764 6778887532 78999999999999999999999874
No 219
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=79.25 E-value=39 Score=36.16 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=47.7
Q ss_pred CCCCHHHHHHhhccCC-----ceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 162 YHTRTRDLERHFEPYG-----KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 162 ~~~~~~~L~~~F~~~G-----~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
..++..+|..++..-+ .|-.|.|...|.||+... ..|...+..|++..+.|+.|.|+.+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 4566777776666554 355677889999999875 457888899999999999999998853
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=78.73 E-value=2.3 Score=37.10 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=52.3
Q ss_pred CccEEEcCCCCCCC-----HHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCc-EEEEEEe
Q 014331 55 MRPIFCGNFEYDAR-----QSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR-RLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~t-----e~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~-~i~V~~a 126 (426)
..+|++++|...+- ....+.+|-+|-+..-..+ ..++.-|.|.+++.|..|...+++..| .|. .+++.|+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f--~~~~~~k~yfa 87 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSF--NGKNELKLYFA 87 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhccc--CCCceEEEEEc
Confidence 34577777776442 2344566666666555444 355666889999999999999999999 677 8888887
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 88 Q~~~ 91 (193)
T KOG4019|consen 88 QPGH 91 (193)
T ss_pred cCCC
Confidence 6543
No 221
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=78.05 E-value=62 Score=30.48 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=4.6
Q ss_pred CCCCCCCCCCC
Q 014331 389 GRVPSPNSMPE 399 (426)
Q Consensus 389 ~~~~s~~~~~~ 399 (426)
.+..|+.+..+
T Consensus 322 srsas~~~~k~ 332 (354)
T KOG2146|consen 322 SRSASKKHKKE 332 (354)
T ss_pred ccccccccchh
Confidence 33444444443
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.19 E-value=1.2 Score=41.19 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=28.0
Q ss_pred CccEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEE
Q 014331 55 MRPIFCGNFEYD------------ARQSDLERLFRRYGKVDRVDM 87 (426)
Q Consensus 55 ~~~l~V~nLp~~------------~te~~L~~~F~~~G~V~~v~i 87 (426)
..|||+.+||-. -+++-|...|+.||.|..|.|
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 579999999842 257889999999999999988
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.57 E-value=2.8 Score=38.90 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=51.6
Q ss_pred EEEEe-CCEEEEEEcChHh----HHHHHHhcCCceecCCCc--EEEEEEeeccCCCCC--CCCC---CCC-CCCCCCCCC
Q 014331 84 RVDMK-SGFAFIYMDDERD----AEDAIRGLDRTEFGRKGR--RLRVEWTKHERGIRR--PGGG---SSA-RRPSTNTRP 150 (426)
Q Consensus 84 ~v~i~-~g~aFV~F~~~~~----A~~Al~~lng~~~~~~g~--~i~V~~a~~~~~~~~--~~~~---~~~-~~~~~~~~~ 150 (426)
.|+|. ..+-||.|+-.-. ..+.+..|+|..+-+.|- .|+|.-+..+..-.. .... ... -........
T Consensus 69 sckiresnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpger 148 (445)
T KOG2891|consen 69 SCKIRESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGER 148 (445)
T ss_pred ceeecccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCC
Confidence 45553 5788999874433 456667777765532222 333433222221100 0000 000 000111222
Q ss_pred CcEEEEecCC-----------CCCCCHHHHHHhhccCCceEEEEEe
Q 014331 151 SKTLFVINFD-----------PYHTRTRDLERHFEPYGKIISVRIR 185 (426)
Q Consensus 151 ~~~l~v~nl~-----------p~~~~~~~L~~~F~~~G~v~~v~i~ 185 (426)
..||++.+|+ ....+++-|...|+.||.|..|.||
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3456655551 1224578899999999999999985
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.09 E-value=6.6 Score=38.45 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=45.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE-eCCEEEEEEcChHhHHHHHHhc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM-KSGFAFIYMDDERDAEDAIRGL 109 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i-~~g~aFV~F~~~~~A~~Al~~l 109 (426)
...|-|.|+|.....+||..+|+.|+.- ..|++ -...||-.|.....|..|| .|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHh-hc
Confidence 5789999999999999999999999753 33433 4778999999999999999 55
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.76 E-value=7.6 Score=36.27 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=37.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE--eCCEEEEEEcChH
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM--KSGFAFIYMDDER 100 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i--~~g~aFV~F~~~~ 100 (426)
..-|+|+||+.++...||+..+.+.|.+ ..|.+ +.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 4679999999999999999999887754 44444 4788999997653
No 226
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.24 E-value=1.3 Score=44.90 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
.+.++|||.||+++++-++|+.++..+-.+..+.++ ..+++|.|.---....|+.+||+.-+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 457899999999999999999999998878887774 45788999877777778888888665
No 227
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=63.98 E-value=3.8 Score=31.57 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=36.7
Q ss_pred EEEecCCchhHHhhhcCCcceec--Ceeccc--cc------chhhhhccCCCccEEEcCCCCCCCHHHHHHHHh
Q 014331 14 LIVYSHSVWPVQKKYLPRRLYVL--GFRRSH--SQ------LSIAAFEVAMMRPIFCGNFEYDARQSDLERLFR 77 (426)
Q Consensus 14 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 77 (426)
++|.|...+-++..+......+. +..... .. ....-......++|.|.|||..+.+++|+++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 35677777666666654444332 111111 00 011111233478999999999999999997654
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.33 E-value=8.5 Score=31.37 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=23.7
Q ss_pred cEEEcCCCCC---------CCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcChHh
Q 014331 57 PIFCGNFEYD---------ARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERD 101 (426)
Q Consensus 57 ~l~V~nLp~~---------~te~~L~~~F~~~G~V~~v~i-----~~g~aFV~F~~~~~ 101 (426)
++.|-|++.. ++.++|.+.|..|..+.-.-+ ..|+|.|+|..--.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 4555566442 355889999999988754333 37899999986544
No 229
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=61.06 E-value=7.9 Score=37.84 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=46.5
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE----------eCCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM----------KSGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i----------~~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
..+.|.|.+||+.+|+.+|.+....|-. |....+ ..+.|||.|..+++.......++|..|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3467889999999999999887766532 111112 1568999999999988888888887773
No 230
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=60.07 E-value=5.9 Score=33.55 Aligned_cols=79 Identities=11% Similarity=-0.103 Sum_probs=54.8
Q ss_pred eeeEEEEecCCchhHHhhhcCCcceecCeecccccchh--hhh---ccCCCccEEEcCCCCC-CCHHHHHHHHhhcCCee
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSI--AAF---EVAMMRPIFCGNFEYD-ARQSDLERLFRRYGKVD 83 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~ 83 (426)
....+.+.|.+.++++..+....-.+.+..+....... ... ......-|.|-|||.. .+++-|.++.+.+|++.
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 34577888999999998888777776665555443221 000 0112334778899987 67888999999999999
Q ss_pred EEEEe
Q 014331 84 RVDMK 88 (426)
Q Consensus 84 ~v~i~ 88 (426)
.|...
T Consensus 134 ~vD~~ 138 (153)
T PF14111_consen 134 EVDEN 138 (153)
T ss_pred EEEcC
Confidence 99873
No 231
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=59.26 E-value=6.3 Score=35.85 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=35.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMD 97 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~ 97 (426)
....+||+-|||..+|++.|..+.+.+|-|..+.+.--++|++=.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~ 82 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESD 82 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCC
Confidence 456799999999999999999999999987776665445555433
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.37 E-value=19 Score=25.68 Aligned_cols=19 Identities=11% Similarity=0.492 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcCCeeEEEE
Q 014331 69 QSDLERLFRRYGKVDRVDM 87 (426)
Q Consensus 69 e~~L~~~F~~~G~V~~v~i 87 (426)
..+|+++|+.+|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999987665
No 233
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=57.31 E-value=30 Score=33.29 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=4.5
Q ss_pred hhcCCeeEEEE
Q 014331 77 RRYGKVDRVDM 87 (426)
Q Consensus 77 ~~~G~V~~v~i 87 (426)
...|-++.|+.
T Consensus 130 r~LGF~~Hv~h 140 (367)
T KOG0835|consen 130 RELGFDVHVEH 140 (367)
T ss_pred HHhCCeeeeec
Confidence 33444444433
No 234
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=55.55 E-value=8.3 Score=36.79 Aligned_cols=7 Identities=0% Similarity=0.529 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 014331 70 SDLERLF 76 (426)
Q Consensus 70 ~~L~~~F 76 (426)
+-|.++|
T Consensus 84 evideIy 90 (453)
T KOG2888|consen 84 EVIDEIY 90 (453)
T ss_pred HHHHHHH
Confidence 3344444
No 235
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=55.48 E-value=50 Score=32.65 Aligned_cols=74 Identities=16% Similarity=0.355 Sum_probs=57.1
Q ss_pred CCCccEEEcCCCC-CCCHHHHHHHHhhc----CCeeEEEEe---------------------------------------
Q 014331 53 AMMRPIFCGNFEY-DARQSDLERLFRRY----GKVDRVDMK--------------------------------------- 88 (426)
Q Consensus 53 ~~~~~l~V~nLp~-~~te~~L~~~F~~~----G~V~~v~i~--------------------------------------- 88 (426)
..+..|-|-||.+ .+...+|..+|+.| |+|..|.|-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 3467888889987 47788999999876 678777770
Q ss_pred ---------------C-------------------CEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 89 ---------------S-------------------GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 89 ---------------~-------------------g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
. -||.|+|.+.+.+.....+++|..+...+..+-+.|.
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 1 1789999999999999999999998655556666654
No 236
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.92 E-value=56 Score=28.26 Aligned_cols=55 Identities=9% Similarity=0.145 Sum_probs=44.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~ln 110 (426)
....++-| +|+..+.++-|.++.+.+|.|.+. --..-.+.|.+.+....||+.+.
T Consensus 110 ~~~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef--ee~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 110 PGFETIRV-KLKKPIQEERLQEISEWHGVIFEF--EEDDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred CCceeEEE-ecCccchHHHHHHHHHHhceeEEe--cCCcEEEEeccHHHHHHHHHHHH
Confidence 44566767 899999999999999999998776 33344778899999999998763
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.89 E-value=57 Score=24.88 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=39.2
Q ss_pred cEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEE---eC--CEEEEEEcChHhHHHHHHhc
Q 014331 57 PIFCGNFEYDARQSDLERLFRR-YG-KVDRVDM---KS--GFAFIYMDDERDAEDAIRGL 109 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~-~G-~V~~v~i---~~--g~aFV~F~~~~~A~~Al~~l 109 (426)
.-|+-.++..++..+|++.++. || +|..|.. +. .-|||.+....+|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4556677899999999999987 55 4566655 23 35999999998888765433
No 238
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=51.42 E-value=50 Score=31.08 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=35.8
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCce-EEEEE--ecCEEEEEecCH
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKI-ISVRI--RRNFAFVQYEVQ 196 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v-~~v~i--~~g~afV~f~~~ 196 (426)
....-|+++|| +.++.-.||+..+.+-|-+ ..+.+ +.+.||+.|.+.
T Consensus 328 ~~~~di~~~nl-~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNL-SRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccC-ccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 33456999999 8999999999988877633 34444 478999999775
No 239
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=50.41 E-value=24 Score=34.17 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred EEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 92 AFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 92 aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
|||.|.+..+|..|++.+... +...+.|+.|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~----~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK----RPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC----CCCCceEeeCCC
Confidence 799999999999999866554 345557766643
No 240
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=49.76 E-value=1.3e+02 Score=24.98 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=51.5
Q ss_pred CccEEEcCCCCC---CCHHHHHHHHhhcC-CeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYD---ARQSDLERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~---~te~~L~~~F~~~G-~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
...|.|...... .+...|.++...-| .++.+....+-..|.|.+.++-.+|.+.|....= ++..|.+..+
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~--~~y~VAlnl~ 108 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLP--HGYIIAQQDD 108 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcC--CCCEEEEecC
Confidence 456777766433 56788889998877 4678888888999999999999888887765533 4555555544
No 241
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.26 E-value=14 Score=32.43 Aligned_cols=72 Identities=10% Similarity=0.109 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCC----HHHHHHhhccCCceEEEEEecC--EEEEEecCHHHHHHHHHHcCCCCCCCc-eEEEEEeecC
Q 014331 153 TLFVINFDPYHTR----TRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMSKLTDR-VISVEYAVRD 224 (426)
Q Consensus 153 ~l~v~nl~p~~~~----~~~L~~~F~~~G~v~~v~i~~g--~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v~~a~~~ 224 (426)
++.+.+++....+ ......+|.+|.+....++.++ ..-|.|.+.+.|..|...+++..|.|+ .+..-++...
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 4555555322222 2344667777777776666655 556789999999999999999999998 8888887764
No 242
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=47.00 E-value=99 Score=30.68 Aligned_cols=76 Identities=26% Similarity=0.439 Sum_probs=57.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccC----CceEEEEEe-------------------------------------
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPY----GKIISVRIR------------------------------------- 185 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~----G~v~~v~i~------------------------------------- 185 (426)
...+++.|-|-||+...+...+|..+|+.| |.|..|.|-
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 356678999999987777788998888755 577777761
Q ss_pred -----------------cC-------------------EEEEEecCHHHHHHHHHHcCCCCCCC--ceEEEEEee
Q 014331 186 -----------------RN-------------------FAFVQYEVQEDATRALDATNMSKLTD--RVISVEYAV 222 (426)
Q Consensus 186 -----------------~g-------------------~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~ 222 (426)
.| ||.|++.+.+.+......++|..+.. ..+.+.|..
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 01 78999999999999999999998874 445555543
No 243
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=46.09 E-value=76 Score=29.26 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEE-----------------eCCEEEEEEcChHhH
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGK--VDRVDM-----------------KSGFAFIYMDDERDA 102 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~--V~~v~i-----------------~~g~aFV~F~~~~~A 102 (426)
.+.+++|+ .|+..++++-|+-+++++|- |....- -..||.|.|....+-
T Consensus 156 h~nr~aY~-~lS~Rad~~lLe~fc~~~gy~~vvf~qT~de~g~PiYHTNVmMaige~favic~~~i~~~ 223 (318)
T COG4874 156 HPNRTAYA-GLSQRADRELLEVFCEQIGYSRVVFFQTRDESGSPIYHTNVMMAIGEHFAVICDEAIPEY 223 (318)
T ss_pred ccchhhhh-hhhcccCHHHHHHHHHHcCCceeeeeeeccccCCcceehhHHHHhhhheeeeeccccccH
Confidence 34677887 78888998888888887773 332211 146888887655443
No 244
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.03 E-value=22 Score=31.07 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=35.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEe---------CCEEEEEEcChHhHHHHHHh
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRY-GKVDRVDMK---------SGFAFIYMDDERDAEDAIRG 108 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~-G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~ 108 (426)
.+++|.. .|+++|..+.... |++..|.|. +|-.||+|.+.++|.+.++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4566665 5555555554433 699999982 67899999999999987743
No 245
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.81 E-value=91 Score=32.97 Aligned_cols=99 Identities=16% Similarity=0.283 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHhhcCCeeEEEEeC-CEEEEEEcChHhHHHHHHhcC--Cc-----eecCCCcEEEEEEeeccCCCCCC
Q 014331 64 EYDARQSDLERLFRRYGKVDRVDMKS-GFAFIYMDDERDAEDAIRGLD--RT-----EFGRKGRRLRVEWTKHERGIRRP 135 (426)
Q Consensus 64 p~~~te~~L~~~F~~~G~V~~v~i~~-g~aFV~F~~~~~A~~Al~~ln--g~-----~~~~~g~~i~V~~a~~~~~~~~~ 135 (426)
++..-.++|.+.|..-+.|..|.+-. ||-++.+....-+...++.+. +. .++ .|++|.|+|+.+..
T Consensus 55 ~P~eiA~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~-~~~kV~iE~sSaNp----- 128 (577)
T COG0018 55 NPREIAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLG-KGKKVVIEYSSANP----- 128 (577)
T ss_pred CHHHHHHHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccC-CCCEEEEEEeCCCC-----
Confidence 33334566666676656678888864 777776665444444444443 22 222 67899999986543
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEE
Q 014331 136 GGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRI 184 (426)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i 184 (426)
.+-++||.| -..+-=+.|..++..+| .|+....
T Consensus 129 ---------------tkplHiGHl-R~aiiGDsLaril~~~Gy~V~r~~y 162 (577)
T COG0018 129 ---------------TGPLHIGHL-RNAIIGDSLARILEFLGYDVTRENY 162 (577)
T ss_pred ---------------CCCcccchh-hhhHHHHHHHHHHHHcCCCeeEEee
Confidence 567899998 44554688889998888 5554444
No 246
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=44.20 E-value=17 Score=34.77 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=5.1
Q ss_pred HHHHHHhhccC
Q 014331 166 TRDLERHFEPY 176 (426)
Q Consensus 166 ~~~L~~~F~~~ 176 (426)
..+|...|+.|
T Consensus 171 p~dLw~WyEpy 181 (453)
T KOG2888|consen 171 PADLWDWYEPY 181 (453)
T ss_pred hhHHHHHhhhh
Confidence 34444444444
No 247
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=40.51 E-value=58 Score=24.00 Aligned_cols=39 Identities=26% Similarity=0.548 Sum_probs=31.5
Q ss_pred HHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 75 LFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 75 ~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
-+.+||.|..+.-...|+ |-|-+.++|+..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356799999887777887 457789999999999988766
No 248
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=40.05 E-value=2e+02 Score=23.79 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=46.8
Q ss_pred CCHHHHHHhhccCC-ceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 164 TRTRDLERHFEPYG-KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 164 ~~~~~L~~~F~~~G-~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
.+-..+.+....-| .++.+....+...|.|.+.++-.+|.+.|....-++..|.+..+.
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 44677888888888 678888888999999999999999988887766556666666554
No 249
>PF14893 PNMA: PNMA
Probab=39.07 E-value=48 Score=32.32 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=43.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEE---------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRR-YGKVDRVDM---------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~V~~v~i---------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
+..+.|.|.+||.++++++|++.+.. +-++-...| ....|+|+|...-+-...=.++-| +|-..+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g-----~gg~W~ 90 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG-----KGGPWR 90 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC-----CCCceE
Confidence 34578999999999999999988764 222222222 245789998754433222222222 567777
Q ss_pred EEEeecc
Q 014331 123 VEWTKHE 129 (426)
Q Consensus 123 V~~a~~~ 129 (426)
|-|....
T Consensus 91 Vv~~p~~ 97 (331)
T PF14893_consen 91 VVFKPPA 97 (331)
T ss_pred EEecCCC
Confidence 7665443
No 250
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=38.54 E-value=1.2e+02 Score=20.63 Aligned_cols=47 Identities=6% Similarity=0.114 Sum_probs=34.4
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHH
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAE 103 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~ 103 (426)
.++|.+.....+.++|.+++..+|--..-.+....-+|-+.+.....
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~ 49 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPK 49 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCch
Confidence 56777776688899999999999875555555566677776665544
No 251
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=37.84 E-value=1.3e+02 Score=22.18 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCeeEEEEe----CCEEEEEEcChHhHHHHHHhcC
Q 014331 70 SDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 70 ~~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~~~A~~Al~~ln 110 (426)
.+|.+++..+| +.-..|+ -++.|+-|.+.+.|+.+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56778888899 6677774 4588888889999998887763
No 252
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=36.80 E-value=21 Score=34.62 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=38.2
Q ss_pred CHHHHHHHHhhcCCeeEEEE----eCCEEEEEEcChHhHHHHHHhcCCc
Q 014331 68 RQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRT 112 (426)
Q Consensus 68 te~~L~~~F~~~G~V~~v~i----~~g~aFV~F~~~~~A~~Al~~lng~ 112 (426)
+...|.+++.+.|.|..-.| ..|.+||-+-.+++|+++++.|++.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 35778888889998876666 5899999999999999999999875
No 253
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.18 E-value=63 Score=31.95 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=41.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCc-eEEE-EEecCEEEEEecCHHHHHHHHHH
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGK-IISV-RIRRNFAFVQYEVQEDATRALDA 205 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~-v~~v-~i~~g~afV~f~~~~~A~~A~~~ 205 (426)
-...|-|.++ |.....+||...|+.|+. -..| +|-...||..|....-|..||-.
T Consensus 390 lpHVlEIydf-p~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDF-PDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccC-chhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhhc
Confidence 3467889999 455557889999999873 2333 44577999999999999999863
No 254
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=35.00 E-value=76 Score=32.97 Aligned_cols=7 Identities=71% Similarity=0.861 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 014331 248 RSPSPYR 254 (426)
Q Consensus 248 rs~sp~r 254 (426)
++.||.+
T Consensus 112 ~s~S~er 118 (752)
T KOG0670|consen 112 RSKSPER 118 (752)
T ss_pred CCCChhh
Confidence 3444433
No 255
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.88 E-value=1.6e+02 Score=20.26 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=37.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcCh----HhHHHHHHh
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDE----RDAEDAIRG 108 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~----~~A~~Al~~ 108 (426)
||.|.||.=.--...|.+.+...-.|..+.+. .+.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 46777776666678888888888778877774 68888998755 444555543
No 256
>PRK02886 hypothetical protein; Provisional
Probab=33.74 E-value=81 Score=24.19 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=30.7
Q ss_pred HhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 76 FRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 76 F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
+.+||.|..+.-...|+ |-|-+.++|+..++.|....|
T Consensus 21 LrkyG~I~Y~Skr~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKRLKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 46799998877777777 557789999999999987766
No 257
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=33.64 E-value=75 Score=23.76 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.1
Q ss_pred CeeEEEEeCCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 81 KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 81 ~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
.|..+.+..+..+|.|+..++-+.|. .|.|..|
T Consensus 46 ~v~~~~~~~~~~i~~~~gi~~r~~Ae-~l~g~~l 78 (84)
T PF01782_consen 46 KVESVRPHGKSLIVKFEGIDDREAAE-ALRGCEL 78 (84)
T ss_dssp EEEEEEEETTEEEEEETT--SHHHHH-TTTT-EE
T ss_pred EEEEEEEeCCEEEEEEcCCCCHHHHH-hhCCCEE
Confidence 45666667999999999999999888 7776655
No 258
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.50 E-value=45 Score=32.19 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=26.0
Q ss_pred EEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 189 AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 189 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
|||+|++..+|+.|++.+.... +..+.+..|.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999765544 355577776654
No 259
>PRK02302 hypothetical protein; Provisional
Probab=33.20 E-value=84 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=31.0
Q ss_pred HhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 76 FRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 76 F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
+.+||.|..+.-...|+ |-|-+.++|+..++.|....|
T Consensus 23 LrkfG~I~Y~Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEeccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 46799999887777777 557799999999999988766
No 260
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=32.54 E-value=1.2e+02 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=25.2
Q ss_pred eeEEEEe---CCEEEEEEcChHhHHHHHHhcCCc
Q 014331 82 VDRVDMK---SGFAFIYMDDERDAEDAIRGLDRT 112 (426)
Q Consensus 82 V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~ 112 (426)
|.+|.++ .||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 5666664 899999999888999999777664
No 261
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.68 E-value=81 Score=23.86 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=22.6
Q ss_pred ceEEEEEe---cCEEEEEecCHHHHHHHHHHcCC
Q 014331 178 KIISVRIR---RNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 178 ~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g 208 (426)
.|..+..+ +||.|||-.+..++.+|++.+.+
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 56666664 89999999999999999987655
No 262
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=31.12 E-value=98 Score=31.18 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=63.2
Q ss_pred eeeEEEEecCCchhHHhhhcCCcceecCeecccccc--------hhhhh-ccCCCccEEEcCCCCCCCHHHHHHHHhhcC
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQL--------SIAAF-EVAMMRPIFCGNFEYDARQSDLERLFRRYG 80 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 80 (426)
+..+..|.-|..+.+..++.... ...|.++..++ ....+ +.....+|.+.+=-+-+|.+.|++|+....
T Consensus 45 ~~~i~vVvGh~ae~V~~~~~~~~--~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~ 122 (460)
T COG1207 45 PDDIVVVVGHGAEQVREALAERD--DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHP 122 (460)
T ss_pred cceEEEEEcCCHHHHHHHhcccc--CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhh
Confidence 45567888899999988887543 11222222221 11222 122224555555556788888888887652
Q ss_pred ------CeeEEEE--e----------CC--EEEEEEcChHhHHHHHHhcCCceec
Q 014331 81 ------KVDRVDM--K----------SG--FAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 81 ------~V~~v~i--~----------~g--~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
.|..+.+ + .| .+.||.+|..++++.|.+.|.-.+.
T Consensus 123 ~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGiy~ 177 (460)
T COG1207 123 AHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIYA 177 (460)
T ss_pred hcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeEEE
Confidence 2333333 1 12 7899999999999999888875553
No 263
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=8.1 Score=38.33 Aligned_cols=70 Identities=7% Similarity=-0.099 Sum_probs=51.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...|+..|+..+++++|.-+|..||.|..+.++ .-++||.-.+. +|..+|..+.-..+ .|..+.|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~--~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTT--FESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhh--hhhhhhhhcCc
Confidence 356788899999999999999999999988884 34778776543 55666666655555 47777776654
Q ss_pred c
Q 014331 128 H 128 (426)
Q Consensus 128 ~ 128 (426)
.
T Consensus 81 ~ 81 (572)
T KOG4365|consen 81 S 81 (572)
T ss_pred h
Confidence 3
No 264
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.53 E-value=1.6e+02 Score=22.60 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=32.3
Q ss_pred HHHHHHhhccCC-ceEEEEEecC----EEEEEecCHHHHHHHHHHcC
Q 014331 166 TRDLERHFEPYG-KIISVRIRRN----FAFVQYEVQEDATRALDATN 207 (426)
Q Consensus 166 ~~~L~~~F~~~G-~v~~v~i~~g----~afV~f~~~~~A~~A~~~l~ 207 (426)
.+.++++++.+| +++.+.+..| ...+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 566788888776 8888888655 67889999998888765543
No 265
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=30.51 E-value=37 Score=34.54 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=29.7
Q ss_pred CCCHHHHHHhhccCCceEEEEE---ecCEEEEEecCHHHHHHHHHHcCC
Q 014331 163 HTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 163 ~~~~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g 208 (426)
.+-+++|.+-|..+-.-..+.. -.+++=+.|.++++|++-++.+..
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~ 137 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQD 137 (569)
T ss_pred eeehHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHH
Confidence 3446777777765543222222 355777889999999988776644
No 266
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.31 E-value=92 Score=23.55 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=23.9
Q ss_pred CeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 81 KVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 81 ~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
.|.+|... +||-|||=.++.++..|+..+.+...
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 45555553 89999999999999999977766543
No 267
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.99 E-value=34 Score=31.31 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=29.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI 184 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i 184 (426)
.....+||+-|+ |..++++-|..+..++|-+..+.+
T Consensus 37 ~~eKd~lfl~Nv-p~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNV-PLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecc-cccccHHHHHHHHHHhhhhhheec
Confidence 344678999999 778889999999999997766655
No 268
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.48 E-value=44 Score=21.00 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhhcCC
Q 014331 65 YDARQSDLERLFRRYGK 81 (426)
Q Consensus 65 ~~~te~~L~~~F~~~G~ 81 (426)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46789999999987653
No 269
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=26.95 E-value=82 Score=25.46 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCC
Q 014331 63 FEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSAR 142 (426)
Q Consensus 63 Lp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~ 142 (426)
||+-++ .|-+.|+.-|+|.+|..-.+ |. -..|+-.++|..=..+|. |.|.-.......
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-----yp----dndal~~~~G~lE~vDg~-i~IGs~q~~~sV---------- 68 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-----YP----DNDALLYVHGTLEQVDGN-IRIGSGQTPASV---------- 68 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-----cC----CchhhheeeeehhhccCc-EEEccCCCcccE----------
Confidence 666654 57789999999998765433 22 233444566643222444 555432211100
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhcc
Q 014331 143 RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 175 (426)
Q Consensus 143 ~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~ 175 (426)
........+..+ ++|+..+-.+|+++|..
T Consensus 69 ~i~gTPsgnnv~----F~PYTlT~~e~r~iF~E 97 (145)
T TIGR02542 69 RIQGTPSGNNVI----FPPYTLTYNELRQIFRE 97 (145)
T ss_pred EEecCCCCCcee----cCceeeeHHHHHHHHhh
Confidence 000001111222 35888999999999974
No 270
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.50 E-value=1.3e+02 Score=28.23 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=33.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRT 112 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~ 112 (426)
.....|+|||+++|..-|..+++..-.+.. +|-+--.|-|+..+..-+..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~--------~v~M~QkEva~Rl~A~pgsk 144 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQD--------MVLMVQKEVAERLVAKPGSK 144 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccce--------EEEEeHHHHHHHHhCCCCCc
Confidence 346789999999999999999987654432 23333445566555333333
No 271
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.86 E-value=2.3e+02 Score=21.73 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcC-CeeEEEEeCC----EEEEEEcChHhHHHHHHhcC
Q 014331 69 QSDLERLFRRYG-KVDRVDMKSG----FAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 69 e~~L~~~F~~~G-~V~~v~i~~g----~aFV~F~~~~~A~~Al~~ln 110 (426)
.+.+.++++.+| +|+++.+..| .+.+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466788888774 7888887644 67788999888887664444
No 272
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.86 E-value=44 Score=30.19 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=20.2
Q ss_pred HHHHHHHh-hcCCeeEEEEeCCEEEEEEcChHh
Q 014331 70 SDLERLFR-RYGKVDRVDMKSGFAFIYMDDERD 101 (426)
Q Consensus 70 ~~L~~~F~-~~G~V~~v~i~~g~aFV~F~~~~~ 101 (426)
++|.+.|. .||.-..-.+.+.||||+|.+.-.
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~IQ 121 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTFIQ 121 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHHHH
Confidence 55555554 366533333568999999987643
No 273
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=38 Score=34.77 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=45.9
Q ss_pred EcCCCCCCCHHHHHH-HHhhcCCeeEE-EE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 60 CGNFEYDARQSDLER-LFRRYGKVDRV-DM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 60 V~nLp~~~te~~L~~-~F~~~G~V~~v-~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
+-+++...-...+.. ++..++-...- .+ ...+|++.|+++..+.+|+..++|..+ .+..+.|..+....
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~--k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLY--KGFILRVQLGATEV 102 (534)
T ss_pred eeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhh--hcchhhhhhccccc
Confidence 334455444444433 33334433322 22 257999999999999999999999988 78888887765554
No 274
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=25.11 E-value=2.6e+02 Score=20.91 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=38.6
Q ss_pred cEEEcCCCCCCCHHHHHHHHhh-cC-CeeEEEE---eC--CEEEEEEcChHhHHHHHHh
Q 014331 57 PIFCGNFEYDARQSDLERLFRR-YG-KVDRVDM---KS--GFAFIYMDDERDAEDAIRG 108 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~-~G-~V~~v~i---~~--g~aFV~F~~~~~A~~Al~~ 108 (426)
.-|+-.++..+|..+|++.++. || +|..|.. +. --|||.+...+.|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4666678999999999999987 55 4555554 23 3599999988888775433
No 275
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=24.34 E-value=3.6e+02 Score=22.15 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=31.0
Q ss_pred HhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 171 RHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 171 ~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
++|...-.+..+.|-..-|+.-|.+-+.|-.|...|-|..++
T Consensus 98 qlfn~~~dlq~fii~ddraifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 98 QLFNAHVDLQRFIIDDDRAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred HhhccccceEEEEecCCeEEEEEeChhHHHHHHHHhhccchh
Confidence 345555455555566778888899999999999888776665
No 276
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=24.18 E-value=2e+02 Score=23.57 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCC
Q 014331 161 PYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 161 p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g 208 (426)
....+++||+-+.++.|. +.++|.+||+..+|
T Consensus 80 ~~~i~eeDIkLV~eQa~V----------------sreeA~kAL~e~~G 111 (122)
T COG1308 80 ESDISEEDIKLVMEQAGV----------------SREEAIKALEEAGG 111 (122)
T ss_pred cCCCCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCC
Confidence 345679999999999874 67999999998776
No 277
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.07 E-value=1e+02 Score=22.38 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=35.6
Q ss_pred HHHHHhhccCC-ceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 167 RDLERHFEPYG-KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 167 ~~L~~~F~~~G-~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
++|.+.|...| .|..|.-+ -...||+++...+..+ .++-..+++..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 45666666666 56655543 2367888877655333 45566788999999876553
No 278
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=24.05 E-value=2e+02 Score=30.90 Aligned_cols=69 Identities=7% Similarity=0.123 Sum_probs=53.4
Q ss_pred CccEEEcCCC--CCCCHHHHHHHHhhcCCe-----eEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 55 MRPIFCGNFE--YDARQSDLERLFRRYGKV-----DRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 55 ~~~l~V~nLp--~~~te~~L~~~F~~~G~V-----~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
+.++|| |+- ..++..+|..++..-+.| -.|.|...|.||+... ..|...+..|++..+ .|+.|.|+.+.
T Consensus 486 ~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 561 (629)
T PRK11634 486 MQLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRI--LNKPMNMQLLG 561 (629)
T ss_pred CEEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccc--cCCceEEEECC
Confidence 344555 554 468888998888766554 4677889999999965 458888889999988 89999999874
No 279
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=23.99 E-value=2e+02 Score=21.77 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=26.4
Q ss_pred EEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCH----HHHHHHHHHcCCCCCCCceEEEE
Q 014331 154 LFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQ----EDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 154 l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~----~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
|-+++++|..+ .+++-..++-..|-.+.|. ...|||.|... +...++++.+....+.-+.|+|+
T Consensus 3 lkfg~It~eeA--~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEA--MVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTT--HHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHH--HHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 45577754443 4455556666677666664 45789999754 78888999999888888887765
No 280
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=23.90 E-value=1.9e+02 Score=24.65 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=29.4
Q ss_pred HHHHHhhccCC-ceEEEEEe---cCEEEEEecCHHHHHHHHHHcCC
Q 014331 167 RDLERHFEPYG-KIISVRIR---RNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 167 ~~L~~~F~~~G-~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g 208 (426)
+.|.+.....+ .|..|.++ +||.||+....+++..++..+.+
T Consensus 23 ~~L~~~~~~~~~~i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 23 LMLAMRAKKENLPIYAILAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHhCCCcEEEEEccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 34444443223 26677675 78999999988999999987765
No 281
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.29 E-value=91 Score=22.79 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHhhccCC-ceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 167 RDLERHFEPYG-KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 167 ~~L~~~F~~~G-~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
++|.+.|..+| .|..+.-+ -..-||+.....+... .|+-..++|..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46777777787 66666654 2367777766543333 4666788899999886544
No 282
>PRK12450 foldase protein PrsA; Reviewed
Probab=22.75 E-value=1.4e+02 Score=28.76 Aligned_cols=43 Identities=16% Similarity=0.414 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcC--Ccee
Q 014331 66 DARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD--RTEF 114 (426)
Q Consensus 66 ~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~ln--g~~~ 114 (426)
.+|+++|+++|..|.+ .+.+ ..|.+.+.+.|+.+++.|. |..|
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~----~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA----EIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee----EEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 4799999999998753 2222 3578899999999999985 6566
No 283
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=22.13 E-value=3.1e+02 Score=28.95 Aligned_cols=80 Identities=10% Similarity=0.236 Sum_probs=48.3
Q ss_pred eeEEEEeCCEEEEEEcCh--HhHHHHHHh-cC-Cceec----CCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcE
Q 014331 82 VDRVDMKSGFAFIYMDDE--RDAEDAIRG-LD-RTEFG----RKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKT 153 (426)
Q Consensus 82 V~~v~i~~g~aFV~F~~~--~~A~~Al~~-ln-g~~~~----~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (426)
|..|.+..+ ||.|.=. .-+...+.. +. +..+| ..+.+|.|+|+.+.. .+.
T Consensus 70 i~~ve~~g~--fiN~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~vE~sSpNp--------------------~kp 127 (562)
T PRK12451 70 FTKVEAVGP--YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNI--------------------AKP 127 (562)
T ss_pred cceeEeeCC--EEEEEECHHHHHHHHHHHHHhhHhhcCCCccCCCCEEEEEecCCCC--------------------CCC
Confidence 667777666 6666533 222332322 22 22232 136789999986544 667
Q ss_pred EEEecCCCCCCCHHHHHHhhccCC-ceEEEEE
Q 014331 154 LFVINFDPYHTRTRDLERHFEPYG-KIISVRI 184 (426)
Q Consensus 154 l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i 184 (426)
|+||++ -..+-=+-|..++..+| .|.....
T Consensus 128 lHvGH~-R~aiiGd~l~ril~~~G~~V~r~ny 158 (562)
T PRK12451 128 FSMGHL-RSTMIGNALKHIAEKCGYEVVGINY 158 (562)
T ss_pred cccchh-hhHHHHHHHHHHHHHCCCCeEEEee
Confidence 888888 45555678888888888 5555554
No 284
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=21.98 E-value=3.4e+02 Score=26.02 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=55.4
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIR 133 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~ 133 (426)
...++|-+.|++..-..|-..+.+.| .|.+..-+.|.-||.|..+++. ....|-+..+.+......|.+....
T Consensus 198 g~~~l~~~~~fd~aW~rl~~aL~~~gf~V~d~drs~G~~~v~y~~~~~~--~w~~l~~~~~~l~~~~Y~i~l~~~g---- 271 (303)
T PF06804_consen 198 GQPALILRAPFDRAWRRLGLALDRLGFTVEDRDRSQGVYYVRYKPPDSE--FWSSLGGKDPDLKAGEYRIQLGDLG---- 271 (303)
T ss_dssp S-EEEEEES-HHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEE----HH--HHHHHTS------SEEEEEEEEEET----
T ss_pred CceEEEECCcHHHHHHHHHHHHHhCCCEEEecccccEEEEEEEcCCChh--hHHHcCCCccccCCCceEEEEEeCC----
Confidence 34567778888888999999999988 5667777899999999887654 2234444333224444555554321
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhc
Q 014331 134 RPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFE 174 (426)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~ 174 (426)
....|.|.+-+....+.+.+..++.
T Consensus 272 ----------------~~t~v~v~d~~G~~l~~~~~~~l~~ 296 (303)
T PF06804_consen 272 ----------------NRTSVTVLDSDGKPLSSEQAQRLYQ 296 (303)
T ss_dssp ----------------TEEEEEEE-TTSSB--HHHHHHHHH
T ss_pred ----------------CcEEEEEECCCCCCCCHHHHHHHHH
Confidence 1356777776555566666666553
No 285
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.85 E-value=1e+02 Score=30.43 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=42.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCc-eEEEEEe----------cCEEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRIR----------RNFAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~-v~~v~i~----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
...|.|.+| |...++++|.+....|-. |....+. -+.|||.|...++...-...++|..|-
T Consensus 7 ~~Kvv~rrl-pp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRL-PPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecC-CCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 456888899 556668777776666542 2222221 358999999999988888888887664
No 286
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.43 E-value=3.2e+02 Score=19.70 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=31.6
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDD 98 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~ 98 (426)
.+|+|-++.=.--...+.+.......|..+.+ ..+-++|.|.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 35666666555556778888888777877766 47779999988
No 287
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.27 E-value=1.1e+02 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.3
Q ss_pred CEEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 187 NFAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 187 g~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
.+.+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36799999999999999888765553
No 288
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.24 E-value=1.1e+02 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred CEEEEEEcChHhHHHHHHhcCCcee
Q 014331 90 GFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 90 g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
.+++|.|.+..+|.+|-+.|....|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4789999999999999988876544
No 289
>PF15063 TC1: Thyroid cancer protein 1
Probab=20.99 E-value=63 Score=23.97 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=32.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeE---EEEeCCEEEEEEcChHhHHHHHHhc
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDR---VDMKSGFAFIYMDDERDAEDAIRGL 109 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~---v~i~~g~aFV~F~~~~~A~~Al~~l 109 (426)
++--+.||=.+++.++|..||..-|..+- ++|. |-...++++...||..|
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI----~~~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKKAEERARII----WECAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHH----HhhCCCHHHHHHHHHhc
Confidence 44457788899999999999999997531 1111 11224566555666544
No 290
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=20.70 E-value=1.8e+02 Score=27.76 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=52.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec---------------CEEEEEecCHHHHHHHH----HHcCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR---------------NFAFVQYEVQEDATRAL----DATNM 208 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~---------------g~afV~f~~~~~A~~A~----~~l~g 208 (426)
.-.+..|.+.|+ ...++--.+...|-+||.|+.|.+.. ....+.|-+.+.+..-. +.|..
T Consensus 12 ~YrTRSLLfeNv-~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 12 EYRTRSLLFENV-NNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred cceeHHHHHhhc-cccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 445677889999 57777888889999999999999953 35788899988776543 22221
Q ss_pred --CCCCCceEEEEEee
Q 014331 209 --SKLTDRVISVEYAV 222 (426)
Q Consensus 209 --~~~~g~~l~v~~a~ 222 (426)
..+.-..|.+.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 23456667766655
No 291
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.68 E-value=1.6e+02 Score=22.59 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=28.1
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMD 97 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~~g~aFV~F~ 97 (426)
..-|||||++..+-+.-...+.+..+.=.-+-+ ..||+|-.+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 457999999998887766666665443222222 2677777663
No 292
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=20.39 E-value=8e+02 Score=26.06 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=22.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR 185 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~ 185 (426)
.....++|.++...++...-..+.+.++|++..|.|.
T Consensus 59 enDrvvMVNGvsMenv~haFAvQqLrksgK~A~Itvk 95 (1027)
T KOG3580|consen 59 ENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVK 95 (1027)
T ss_pred cCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEec
Confidence 3456677777743333333334556688888887774
Done!