Query 014331
Match_columns 426
No_of_seqs 518 out of 3205
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 09:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.8E-32 9.6E-37 248.8 16.4 155 53-224 13-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 2.7E-31 9.4E-36 231.5 18.5 150 56-222 1-165 (166)
3 2ghp_A U4/U6 snRNA-associated 100.0 6.5E-31 2.2E-35 251.1 21.4 193 11-224 81-291 (292)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-30 3.7E-35 228.5 20.6 149 54-221 2-168 (168)
5 3smz_A Protein raver-1, ribonu 100.0 2.1E-30 7E-35 246.6 21.1 194 9-225 55-265 (284)
6 1l3k_A Heterogeneous nuclear r 100.0 1.5E-30 5.2E-35 233.5 18.7 161 52-227 10-186 (196)
7 1fxl_A Paraneoplastic encephal 100.0 2.1E-30 7.3E-35 226.1 18.9 148 55-221 2-167 (167)
8 2adc_A Polypyrimidine tract-bi 100.0 4.3E-30 1.5E-34 236.9 21.1 171 50-223 29-227 (229)
9 3tyt_A Heterogeneous nuclear r 100.0 2.8E-30 9.6E-35 233.7 18.3 165 54-221 3-204 (205)
10 2qfj_A FBP-interacting repress 100.0 7E-30 2.4E-34 232.7 19.8 165 53-225 26-206 (216)
11 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-29 4E-34 241.2 21.3 169 52-223 6-282 (282)
12 2g4b_A Splicing factor U2AF 65 100.0 6.3E-30 2.1E-34 224.6 17.2 148 54-221 3-171 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 1.4E-29 4.8E-34 227.5 19.8 168 54-225 3-195 (198)
14 1qm9_A Polypyrimidine tract-bi 100.0 9.6E-30 3.3E-34 229.0 17.6 166 55-223 3-196 (198)
15 3nmr_A Cugbp ELAV-like family 100.0 1.9E-29 6.5E-34 221.9 18.5 153 54-222 2-175 (175)
16 1fje_B Nucleolin RBD12, protei 100.0 5.7E-30 1.9E-34 225.7 12.4 155 52-224 10-174 (175)
17 2cjk_A Nuclear polyadenylated 100.0 5.6E-30 1.9E-34 223.8 12.1 149 54-224 2-166 (167)
18 3sde_A Paraspeckle component 1 100.0 2.2E-28 7.5E-33 229.9 16.7 148 53-225 20-180 (261)
19 3smz_A Protein raver-1, ribonu 100.0 2.1E-27 7.3E-32 225.8 18.8 147 53-225 20-176 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 5.4E-27 1.9E-31 223.9 16.8 148 51-225 37-198 (292)
21 3pgw_S U1-70K; protein-RNA com 99.9 2.1E-21 7.3E-26 194.5 16.2 77 148-225 99-183 (437)
22 4f25_A Polyadenylate-binding p 99.9 1.4E-21 4.9E-26 159.9 10.0 103 54-167 4-112 (115)
23 2i2y_A Fusion protein consists 99.8 1.9E-21 6.4E-26 167.0 10.1 132 89-224 13-148 (150)
24 2kn4_A Immunoglobulin G-bindin 99.8 7.7E-20 2.6E-24 158.2 12.8 132 88-225 12-151 (158)
25 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-19 8.1E-24 142.5 9.8 73 54-128 18-98 (99)
26 3pgw_S U1-70K; protein-RNA com 99.8 8.4E-18 2.9E-22 168.4 21.0 76 53-130 100-183 (437)
27 2hvz_A Splicing factor, argini 99.8 4.2E-19 1.4E-23 141.6 8.3 97 56-160 1-100 (101)
28 2wbr_A GW182, gawky, LD47780P; 99.8 5.5E-19 1.9E-23 134.5 8.4 72 54-127 6-79 (89)
29 3r27_A HnRNP L, heterogeneous 99.8 8.3E-19 2.8E-23 138.3 9.4 78 53-130 19-98 (100)
30 2dnq_A RNA-binding protein 4B; 99.8 2.6E-18 8.9E-23 134.0 10.8 76 53-130 6-81 (90)
31 2dnp_A RNA-binding protein 14; 99.8 2.9E-18 1E-22 133.7 10.9 76 53-130 7-82 (90)
32 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.7E-23 139.0 8.4 76 53-130 14-93 (105)
33 2dgt_A RNA-binding protein 30; 99.8 4.1E-18 1.4E-22 133.4 11.7 77 52-130 7-83 (92)
34 2dgu_A Heterogeneous nuclear r 99.8 5.3E-18 1.8E-22 135.7 12.5 77 53-131 9-85 (103)
35 3lqv_A PRE-mRNA branch site pr 99.8 4.4E-19 1.5E-23 145.0 6.2 99 53-178 6-109 (115)
36 2xnq_A Nuclear polyadenylated 99.8 4.2E-18 1.4E-22 134.8 10.7 76 52-129 19-95 (97)
37 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.8E-23 138.2 7.7 76 53-130 13-93 (102)
38 3s8s_A Histone-lysine N-methyl 99.7 3.8E-18 1.3E-22 138.2 9.9 75 53-129 4-86 (110)
39 2lkz_A RNA-binding protein 5; 99.7 1.5E-18 5.2E-23 136.5 7.1 75 52-128 6-94 (95)
40 2kvi_A Nuclear polyadenylated 99.7 3E-18 1E-22 135.3 8.8 76 53-130 8-84 (96)
41 2g4b_A Splicing factor U2AF 65 99.7 8E-18 2.7E-22 147.0 11.8 115 10-127 50-172 (172)
42 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-17 4.5E-22 132.4 11.8 76 53-130 13-90 (99)
43 4f02_A Polyadenylate-binding p 99.7 7E-18 2.4E-22 153.3 11.4 119 10-130 56-182 (213)
44 1x4c_A Splicing factor, argini 99.7 9.6E-18 3.3E-22 135.5 10.7 76 53-130 13-94 (108)
45 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.7E-22 135.3 11.0 77 52-130 19-100 (109)
46 2lxi_A RNA-binding protein 10; 99.7 2.5E-18 8.5E-23 134.4 7.0 74 55-130 1-84 (91)
47 1wf1_A RNA-binding protein RAL 99.7 8.6E-18 2.9E-22 136.2 10.3 76 53-130 25-101 (110)
48 2i2y_A Fusion protein consists 99.7 4.7E-18 1.6E-22 145.7 9.1 116 11-129 13-148 (150)
49 2kn4_A Immunoglobulin G-bindin 99.7 1.6E-17 5.5E-22 143.5 12.6 119 10-130 12-151 (158)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.7E-22 128.8 10.3 73 53-127 5-85 (85)
51 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.9E-17 6.6E-22 132.4 12.1 77 52-130 12-94 (103)
52 2jvo_A Nucleolar protein 3; nu 99.7 6.8E-18 2.3E-22 136.3 9.5 78 51-130 27-104 (108)
53 1wex_A Hypothetical protein (r 99.7 9.6E-18 3.3E-22 134.2 10.2 78 53-130 13-92 (104)
54 4a8x_A RNA-binding protein wit 99.7 1.2E-17 4E-22 129.5 10.4 74 54-129 3-85 (88)
55 2cq1_A PTB-like protein L; RRM 99.7 1.3E-17 4.5E-22 132.6 10.8 76 53-130 13-92 (101)
56 3md3_A Nuclear and cytoplasmic 99.7 1.2E-17 4.3E-22 144.6 11.7 116 10-127 40-165 (166)
57 1whw_A Hypothetical protein ri 99.7 2E-17 7E-22 131.2 11.8 77 53-131 6-90 (99)
58 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-17 3.8E-22 132.0 10.0 76 53-130 7-91 (96)
59 2cq3_A RNA-binding protein 9; 99.7 2.3E-17 7.9E-22 131.9 12.0 77 52-130 12-94 (103)
60 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.2E-18 2.8E-22 146.6 10.1 132 94-226 11-154 (165)
61 2ad9_A Polypyrimidine tract-bi 99.7 9.4E-18 3.2E-22 136.9 9.7 76 53-130 29-108 (119)
62 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.9E-22 129.3 9.6 75 53-129 4-86 (87)
63 2dgo_A Cytotoxic granule-assoc 99.7 3.1E-17 1.1E-21 133.9 12.8 79 52-132 12-98 (115)
64 2yh0_A Splicing factor U2AF 65 99.7 1.7E-17 5.7E-22 148.4 11.8 119 10-130 50-195 (198)
65 2jvr_A Nucleolar protein 3; RN 99.7 1E-17 3.4E-22 135.5 9.1 75 53-129 26-105 (111)
66 2cq0_A Eukaryotic translation 99.7 1.3E-17 4.6E-22 133.3 9.6 77 52-130 12-96 (103)
67 3md1_A Nuclear and cytoplasmic 99.7 1.6E-17 5.3E-22 127.3 9.6 72 56-129 2-81 (83)
68 1x4f_A Matrin 3; structural ge 99.7 5.5E-18 1.9E-22 136.8 7.3 77 52-130 22-103 (112)
69 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.6E-22 132.8 10.1 77 52-130 12-94 (103)
70 1x4c_A Splicing factor, argini 99.7 5.7E-17 1.9E-21 130.9 13.3 77 147-224 11-93 (108)
71 2dnz_A Probable RNA-binding pr 99.7 2.6E-17 9E-22 129.5 11.1 76 53-130 3-86 (95)
72 2ytc_A PRE-mRNA-splicing facto 99.7 1.4E-17 4.9E-22 128.2 9.2 74 52-127 9-85 (85)
73 1x5s_A Cold-inducible RNA-bind 99.7 2.1E-17 7.2E-22 131.9 10.4 76 53-130 10-93 (102)
74 1why_A Hypothetical protein ri 99.7 1.7E-17 5.8E-22 131.2 9.7 76 53-130 15-94 (97)
75 2dnm_A SRP46 splicing factor; 99.7 1.5E-17 5.2E-22 133.0 9.5 77 52-130 10-94 (103)
76 1x5u_A Splicing factor 3B subu 99.7 2.3E-17 8E-22 132.3 10.5 77 52-130 12-96 (105)
77 2e5h_A Zinc finger CCHC-type a 99.7 2.1E-17 7.3E-22 129.8 10.0 73 53-127 14-94 (94)
78 2x1f_A MRNA 3'-END-processing 99.7 2.3E-17 7.8E-22 130.2 10.1 74 55-130 2-83 (96)
79 1fje_B Nucleolin RBD12, protei 99.7 1.6E-17 5.3E-22 145.8 10.0 118 10-129 53-174 (175)
80 2cpz_A CUG triplet repeat RNA- 99.7 2.2E-17 7.5E-22 134.9 10.2 76 53-130 23-106 (115)
81 1x5t_A Splicing factor 3B subu 99.7 2.2E-17 7.4E-22 130.2 9.8 76 53-130 3-87 (96)
82 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.9E-17 6.4E-22 132.2 9.5 76 53-130 10-93 (102)
83 3beg_B Splicing factor, argini 99.7 1.7E-17 5.8E-22 135.5 9.4 74 149-223 14-93 (115)
84 2do4_A Squamous cell carcinoma 99.7 3.1E-17 1E-21 130.5 10.4 76 53-130 15-97 (100)
85 2cqc_A Arginine/serine-rich sp 99.7 2.3E-17 7.7E-22 129.8 9.5 75 52-128 12-94 (95)
86 2fy1_A RNA-binding motif prote 99.7 4.4E-17 1.5E-21 133.3 11.5 77 52-130 4-87 (116)
87 1x4g_A Nucleolysin TIAR; struc 99.7 4.8E-17 1.7E-21 131.5 11.6 78 51-130 21-100 (109)
88 2dgs_A DAZ-associated protein 99.7 4.1E-17 1.4E-21 129.5 10.9 76 52-130 7-90 (99)
89 2dnh_A Bruno-like 5, RNA bindi 99.7 3.3E-17 1.1E-21 131.5 10.4 76 53-130 13-98 (105)
90 2cqh_A IGF-II mRNA-binding pro 99.7 2.2E-17 7.7E-22 129.4 9.2 76 53-130 6-84 (93)
91 2cpf_A RNA binding motif prote 99.7 3.8E-17 1.3E-21 129.4 10.6 76 53-130 3-89 (98)
92 1whx_A Hypothetical protein ri 99.7 1.8E-17 6.1E-22 134.5 8.8 75 54-130 9-85 (111)
93 2ywk_A Putative RNA-binding pr 99.7 2.3E-17 8E-22 129.8 9.1 75 52-128 13-94 (95)
94 2cpj_A Non-POU domain-containi 99.7 2E-17 6.9E-22 131.3 8.8 76 53-130 13-90 (99)
95 3nmr_A Cugbp ELAV-like family 99.7 5.5E-17 1.9E-21 141.9 12.1 118 9-127 45-175 (175)
96 2err_A Ataxin-2-binding protei 99.7 2.5E-17 8.5E-22 133.2 9.0 76 52-129 26-107 (109)
97 1x4h_A RNA-binding protein 28; 99.7 6.4E-17 2.2E-21 131.1 11.2 77 52-130 12-102 (111)
98 2la4_A Nuclear and cytoplasmic 99.7 1.6E-17 5.5E-22 132.4 7.5 74 53-128 25-100 (101)
99 3ns6_A Eukaryotic translation 99.7 1.3E-17 4.5E-22 132.7 6.9 74 54-129 5-93 (100)
100 1p27_B RNA-binding protein 8A; 99.7 3.4E-17 1.2E-21 131.6 9.4 76 53-130 21-104 (106)
101 2qfj_A FBP-interacting repress 99.7 5E-17 1.7E-21 147.4 11.6 119 10-130 69-206 (216)
102 1l3k_A Heterogeneous nuclear r 99.7 7.1E-17 2.4E-21 144.1 12.4 118 11-131 55-185 (196)
103 1oo0_B CG8781-PA, drosophila Y 99.7 5E-17 1.7E-21 131.6 10.2 76 53-130 24-107 (110)
104 3ulh_A THO complex subunit 4; 99.7 4.6E-17 1.6E-21 131.1 9.9 74 52-127 26-106 (107)
105 2dgv_A HnRNP M, heterogeneous 99.7 4.2E-17 1.4E-21 127.5 9.2 76 53-130 6-87 (92)
106 2do0_A HnRNP M, heterogeneous 99.7 1.4E-16 4.7E-21 129.8 12.7 76 53-130 13-95 (114)
107 1s79_A Lupus LA protein; RRM, 99.7 2.4E-17 8.3E-22 131.7 8.0 74 53-129 9-89 (103)
108 2a3j_A U1 small nuclear ribonu 99.7 3.3E-17 1.1E-21 135.9 9.0 76 53-130 27-111 (127)
109 2jrs_A RNA-binding protein 39; 99.7 5.1E-17 1.7E-21 131.2 9.5 76 52-129 23-106 (108)
110 2cqd_A RNA-binding region cont 99.7 1.2E-16 4E-21 130.7 11.8 76 52-130 14-97 (116)
111 3ex7_B RNA-binding protein 8A; 99.7 4.1E-17 1.4E-21 135.4 9.2 76 53-130 20-103 (126)
112 1nu4_A U1A RNA binding domain; 99.7 6.3E-17 2.2E-21 127.8 9.8 77 52-130 5-90 (97)
113 2e5j_A Methenyltetrahydrofolat 99.7 3.2E-17 1.1E-21 129.6 7.9 76 52-130 16-95 (97)
114 3p5t_L Cleavage and polyadenyl 99.7 9.9E-18 3.4E-22 130.7 4.8 73 56-130 2-84 (90)
115 2cpi_A CCR4-NOT transcription 99.7 2.1E-17 7.2E-22 134.1 6.9 76 53-130 13-102 (111)
116 2div_A TRNA selenocysteine ass 99.7 3.7E-17 1.3E-21 129.7 8.1 76 53-130 7-95 (99)
117 1b7f_A Protein (SXL-lethal pro 99.7 7.9E-17 2.7E-21 140.0 11.0 112 12-126 46-168 (168)
118 2dgu_A Heterogeneous nuclear r 99.7 2.5E-16 8.5E-21 125.9 12.7 79 147-226 7-85 (103)
119 2la6_A RNA-binding protein FUS 99.7 5.4E-17 1.9E-21 128.8 8.7 74 52-127 10-99 (99)
120 2lea_A Serine/arginine-rich sp 99.7 1.6E-17 5.6E-22 139.6 5.8 116 90-225 5-128 (135)
121 2cpe_A RNA-binding protein EWS 99.7 7.7E-17 2.6E-21 131.1 9.7 77 52-130 12-104 (113)
122 2khc_A Testis-specific RNP-typ 99.7 5.1E-17 1.7E-21 133.3 8.5 74 52-127 37-118 (118)
123 1fxl_A Paraneoplastic encephal 99.7 1.2E-16 4.2E-21 138.5 11.5 112 12-126 45-167 (167)
124 2kxn_B Transformer-2 protein h 99.7 3.4E-17 1.2E-21 136.5 7.5 77 52-130 43-127 (129)
125 1wi8_A EIF-4B, eukaryotic tran 99.7 9.4E-17 3.2E-21 128.6 9.8 75 52-130 12-95 (104)
126 3ucg_A Polyadenylate-binding p 99.7 8.4E-17 2.9E-21 124.9 9.2 72 55-129 6-85 (89)
127 2dnq_A RNA-binding protein 4B; 99.7 2.2E-16 7.6E-21 122.9 11.5 78 148-226 5-82 (90)
128 2cph_A RNA binding motif prote 99.7 1.3E-16 4.6E-21 128.3 10.6 77 52-130 12-98 (107)
129 1p1t_A Cleavage stimulation fa 99.7 2.6E-17 9E-22 131.8 6.3 75 54-130 7-89 (104)
130 2dhg_A TRNA selenocysteine ass 99.7 6.2E-17 2.1E-21 129.6 8.5 77 53-131 7-92 (104)
131 2dng_A Eukaryotic translation 99.7 1.2E-16 4E-21 127.8 9.9 75 52-130 12-94 (103)
132 2cjk_A Nuclear polyadenylated 99.7 5.6E-17 1.9E-21 140.9 8.7 113 12-129 46-166 (167)
133 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-16 5.5E-21 134.2 11.2 78 52-131 39-124 (139)
134 2nlw_A Eukaryotic translation 99.7 8E-17 2.7E-21 129.3 8.9 75 53-129 13-100 (105)
135 3s7r_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 123.2 9.9 72 52-126 8-87 (87)
136 2lea_A Serine/arginine-rich sp 99.7 2.7E-17 9.4E-22 138.2 6.2 78 51-130 43-128 (135)
137 3beg_B Splicing factor, argini 99.7 6.1E-17 2.1E-21 132.2 7.8 73 54-128 15-93 (115)
138 2cq4_A RNA binding motif prote 99.7 7.9E-17 2.7E-21 131.3 8.5 74 54-130 24-105 (114)
139 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-16 4.7E-21 137.4 10.5 76 53-130 37-120 (156)
140 1x5p_A Negative elongation fac 99.7 2.4E-16 8.2E-21 124.6 10.8 74 53-130 13-88 (97)
141 4fxv_A ELAV-like protein 1; RN 99.7 1.5E-16 5.1E-21 126.2 9.6 74 149-223 17-98 (99)
142 2dgp_A Bruno-like 4, RNA bindi 99.7 1.4E-16 4.7E-21 128.0 9.5 79 52-130 10-97 (106)
143 2cpd_A Apobec-1 stimulating pr 99.7 5.4E-16 1.8E-20 123.0 12.6 80 145-225 9-90 (99)
144 3n9u_C Cleavage and polyadenyl 99.7 1E-16 3.6E-21 138.0 9.0 74 54-129 54-137 (156)
145 1sjr_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 136.9 9.3 78 53-130 44-125 (164)
146 2kt5_A RNA and export factor-b 99.7 2.8E-16 9.6E-21 130.0 11.2 77 52-130 32-115 (124)
147 3zzy_A Polypyrimidine tract-bi 99.7 1.6E-16 5.6E-21 131.2 9.7 76 53-130 26-107 (130)
148 2cqp_A RNA-binding protein 12; 99.7 5.7E-17 2E-21 128.3 6.7 75 53-129 13-95 (98)
149 2dgt_A RNA-binding protein 30; 99.7 3.4E-16 1.2E-20 122.4 11.0 79 147-226 6-84 (92)
150 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.7E-21 128.4 8.3 76 52-130 13-96 (105)
151 3pgw_A U1-A; protein-RNA compl 99.7 2.7E-16 9.2E-21 148.8 12.3 72 54-127 206-281 (282)
152 2ek1_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 128.1 5.7 73 53-127 13-93 (95)
153 2dis_A Unnamed protein product 99.7 3E-16 1E-20 126.7 10.7 76 53-130 6-93 (109)
154 2dnp_A RNA-binding protein 14; 99.7 3.4E-16 1.2E-20 121.9 10.4 77 148-225 6-82 (90)
155 2kvi_A Nuclear polyadenylated 99.7 2.3E-16 7.8E-21 124.5 9.5 78 148-226 7-85 (96)
156 2mss_A Protein (musashi1); RNA 99.7 7.1E-17 2.4E-21 121.2 6.1 67 57-126 1-75 (75)
157 2fc9_A NCL protein; structure 99.7 1.8E-16 6.2E-21 126.2 8.8 76 53-130 13-92 (101)
158 2e5i_A Heterogeneous nuclear r 99.7 2.7E-16 9.1E-21 129.4 9.9 74 55-130 25-103 (124)
159 2cq2_A Hypothetical protein LO 99.7 2.4E-16 8.3E-21 127.2 9.4 78 53-130 23-107 (114)
160 2krb_A Eukaryotic translation 99.7 8.3E-17 2.8E-21 122.8 6.3 66 56-123 2-80 (81)
161 2rs2_A Musashi-1, RNA-binding 99.7 3.4E-16 1.2E-20 126.5 10.2 76 52-130 22-105 (109)
162 3r27_A HnRNP L, heterogeneous 99.7 3.7E-16 1.3E-20 123.1 10.1 77 147-224 17-97 (100)
163 2adc_A Polypyrimidine tract-bi 99.7 2.3E-16 7.8E-21 144.9 10.3 116 12-129 73-228 (229)
164 2cpx_A Hypothetical protein FL 99.7 2.1E-16 7.2E-21 128.9 8.9 76 53-130 23-106 (115)
165 1wg1_A KIAA1579 protein, homol 99.7 1.6E-16 5.5E-21 123.2 7.8 74 54-130 4-79 (88)
166 2d9p_A Polyadenylate-binding p 99.7 1.2E-15 4E-20 121.9 13.0 81 145-226 9-95 (103)
167 1x4b_A Heterogeneous nuclear r 99.7 3E-16 1E-20 128.3 9.6 76 53-131 25-108 (116)
168 2diu_A KIAA0430 protein; struc 99.7 2E-16 6.8E-21 121.5 7.8 73 55-131 8-86 (96)
169 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.8E-16 9.7E-21 136.7 9.8 76 53-130 70-153 (165)
170 2ki2_A SS-DNA binding protein 99.7 5.2E-17 1.8E-21 126.5 4.5 73 55-130 1-81 (90)
171 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-16 3.8E-21 120.7 6.1 68 56-126 1-76 (77)
172 2cqg_A TDP-43, TAR DNA-binding 99.7 6.4E-16 2.2E-20 123.4 10.8 75 52-130 12-94 (103)
173 2cq1_A PTB-like protein L; RRM 99.6 2.1E-15 7.1E-20 119.8 13.5 80 146-226 10-93 (101)
174 2dgw_A Probable RNA-binding pr 99.6 4.4E-16 1.5E-20 121.5 9.5 74 53-130 8-88 (91)
175 1wf1_A RNA-binding protein RAL 99.6 2.7E-16 9.4E-21 127.2 8.5 77 148-225 24-101 (110)
176 1qm9_A Polypyrimidine tract-bi 99.6 2E-16 6.8E-21 141.7 8.5 116 12-129 42-197 (198)
177 1fjc_A Nucleolin RBD2, protein 99.6 2.1E-16 7.1E-21 124.6 7.6 76 53-130 14-92 (96)
178 1x4e_A RNA binding motif, sing 99.6 4E-17 1.4E-21 125.7 3.1 72 53-126 3-82 (85)
179 2cq3_A RNA-binding protein 9; 99.6 2.5E-15 8.6E-20 120.0 13.8 81 145-226 9-95 (103)
180 1x4d_A Matrin 3; structural ge 99.6 8.4E-16 2.9E-20 122.1 10.8 77 148-225 12-93 (102)
181 2jwn_A Embryonic polyadenylate 99.6 4.1E-16 1.4E-20 129.0 9.4 75 53-130 34-116 (124)
182 2xnq_A Nuclear polyadenylated 99.6 7.3E-16 2.5E-20 121.8 10.4 78 146-224 17-95 (97)
183 2wbr_A GW182, gawky, LD47780P; 99.6 3.8E-16 1.3E-20 118.8 8.0 73 150-223 6-80 (89)
184 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.7E-16 1.6E-20 131.3 9.6 73 52-126 60-140 (140)
185 3ex7_B RNA-binding protein 8A; 99.6 8E-16 2.7E-20 127.6 10.8 80 146-226 17-104 (126)
186 2fc8_A NCL protein; structure 99.6 5.2E-16 1.8E-20 123.7 9.2 78 52-131 12-94 (102)
187 1wex_A Hypothetical protein (r 99.6 2.2E-15 7.7E-20 120.4 12.9 80 146-226 10-93 (104)
188 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.3E-16 4.5E-21 126.8 5.7 74 52-129 16-98 (100)
189 2cpy_A RNA-binding protein 12; 99.6 2.2E-16 7.6E-21 128.7 7.0 75 53-130 13-95 (114)
190 3d2w_A TAR DNA-binding protein 99.6 6.3E-16 2.2E-20 120.1 9.3 75 52-130 8-85 (89)
191 1x4a_A Splicing factor, argini 99.6 2E-15 6.8E-20 121.9 12.5 81 145-226 16-101 (109)
192 2m2b_A RNA-binding protein 10; 99.6 2.6E-16 9E-21 131.6 7.4 76 52-130 20-109 (131)
193 3s8s_A Histone-lysine N-methyl 99.6 8.9E-16 3E-20 124.2 10.2 76 148-224 3-86 (110)
194 2dnz_A Probable RNA-binding pr 99.6 2.6E-15 8.9E-20 117.9 12.6 77 149-226 3-87 (95)
195 1sjq_A Polypyrimidine tract-bi 99.6 4.5E-16 1.5E-20 123.8 8.1 79 147-226 12-94 (105)
196 2e44_A Insulin-like growth fac 99.6 5.4E-16 1.9E-20 122.2 8.6 75 53-129 13-92 (96)
197 2db1_A Heterogeneous nuclear r 99.6 3.1E-16 1.1E-20 128.6 7.4 75 53-130 15-99 (118)
198 1wg5_A Heterogeneous nuclear r 99.6 5.2E-16 1.8E-20 124.3 8.5 75 53-130 13-95 (104)
199 2dnh_A Bruno-like 5, RNA bindi 99.6 3.1E-15 1.1E-19 119.8 13.1 79 147-226 11-99 (105)
200 2e5g_A U6 snRNA-specific termi 99.6 8.8E-16 3E-20 120.5 9.6 75 53-130 6-83 (94)
201 1x5o_A RNA binding motif, sing 99.6 7.1E-16 2.4E-20 125.6 9.1 78 52-129 22-112 (114)
202 1x5u_A Splicing factor 3B subu 99.6 3.1E-15 1.1E-19 119.9 12.6 81 145-226 9-97 (105)
203 2cqi_A Nucleolysin TIAR; RNA r 99.6 3.2E-15 1.1E-19 119.4 12.5 80 146-226 10-95 (103)
204 4f25_A Polyadenylate-binding p 99.6 1.1E-15 3.6E-20 124.8 9.6 75 150-225 4-84 (115)
205 2dnm_A SRP46 splicing factor; 99.6 1.8E-15 6E-20 120.9 10.7 79 146-225 8-94 (103)
206 1fj7_A Nucleolin RBD1, protein 99.6 1.5E-16 5.3E-21 126.6 4.5 75 53-130 15-96 (101)
207 2hzc_A Splicing factor U2AF 65 99.6 9.8E-16 3.4E-20 118.3 8.8 70 53-125 4-86 (87)
208 1whw_A Hypothetical protein ri 99.6 3.5E-15 1.2E-19 118.2 12.2 78 148-226 5-90 (99)
209 1wez_A HnRNP H', FTP-3, hetero 99.6 4.8E-16 1.6E-20 124.0 7.1 74 53-130 13-93 (102)
210 2jvo_A Nucleolar protein 3; nu 99.6 8.3E-16 2.8E-20 124.0 8.6 79 146-225 26-104 (108)
211 3q2s_C Cleavage and polyadenyl 99.6 4.7E-16 1.6E-20 142.5 8.0 74 54-129 67-150 (229)
212 2f3j_A RNA and export factor b 99.6 7.8E-16 2.7E-20 135.4 9.1 76 53-130 86-168 (177)
213 1iqt_A AUF1, heterogeneous nuc 99.6 3.2E-16 1.1E-20 117.5 5.6 67 57-126 1-75 (75)
214 2dgs_A DAZ-associated protein 99.6 4.9E-15 1.7E-19 117.4 12.8 78 147-226 6-91 (99)
215 1why_A Hypothetical protein ri 99.6 4.1E-15 1.4E-19 117.4 12.3 79 146-225 12-94 (97)
216 1wel_A RNA-binding protein 12; 99.6 2E-16 6.9E-21 130.9 4.9 74 53-129 23-104 (124)
217 1x5s_A Cold-inducible RNA-bind 99.6 2.5E-15 8.4E-20 119.8 11.1 79 147-226 8-94 (102)
218 2ad9_A Polypyrimidine tract-bi 99.6 2E-15 6.8E-20 123.1 10.5 79 147-226 27-109 (119)
219 2fy1_A RNA-binding motif prote 99.6 3.5E-15 1.2E-19 121.9 12.0 77 148-225 4-87 (116)
220 2dgx_A KIAA0430 protein; RRM d 99.6 1.9E-15 6.3E-20 119.2 10.0 76 148-224 6-90 (96)
221 2do4_A Squamous cell carcinoma 99.6 3.7E-15 1.3E-19 118.3 11.8 79 146-225 12-97 (100)
222 2hgl_A HNRPF protein, heteroge 99.6 4.1E-16 1.4E-20 130.8 6.5 75 52-129 41-125 (136)
223 2dgo_A Cytotoxic granule-assoc 99.6 7.6E-15 2.6E-19 119.6 13.9 81 146-227 10-98 (115)
224 2bz2_A Negative elongation fac 99.6 8.9E-16 3E-20 126.4 8.3 75 52-130 36-112 (121)
225 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.2E-15 7.4E-20 115.8 10.0 74 148-222 4-85 (85)
226 1x4f_A Matrin 3; structural ge 99.6 4E-15 1.4E-19 120.0 11.8 79 146-225 20-103 (112)
227 4a8x_A RNA-binding protein wit 99.6 3E-15 1E-19 115.8 10.7 74 150-224 3-85 (88)
228 3tyt_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 138.0 9.1 113 12-126 43-204 (205)
229 2e5h_A Zinc finger CCHC-type a 99.6 3.9E-15 1.3E-19 116.7 11.3 77 145-222 10-94 (94)
230 2cpj_A Non-POU domain-containi 99.6 4.6E-15 1.6E-19 117.6 11.8 79 146-225 10-90 (99)
231 1wi8_A EIF-4B, eukaryotic tran 99.6 5E-15 1.7E-19 118.5 12.0 79 146-227 10-97 (104)
232 3egn_A RNA-binding protein 40; 99.6 7.5E-16 2.6E-20 130.8 7.5 76 53-130 43-131 (143)
233 2cq0_A Eukaryotic translation 99.6 6.1E-15 2.1E-19 117.7 12.4 79 146-225 10-96 (103)
234 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.9E-15 6.5E-20 120.4 9.3 79 147-226 8-94 (102)
235 1x4h_A RNA-binding protein 28; 99.6 6E-15 2.1E-19 119.4 12.4 81 145-226 9-103 (111)
236 2jvr_A Nucleolar protein 3; RN 99.6 8.1E-16 2.8E-20 124.3 7.1 75 149-224 26-105 (111)
237 2cpf_A RNA binding motif prote 99.6 3.3E-15 1.1E-19 118.1 10.5 77 149-226 3-90 (98)
238 2dnn_A RNA-binding protein 12; 99.6 1.5E-15 5.1E-20 122.4 8.6 71 55-129 16-93 (109)
239 1x5t_A Splicing factor 3B subu 99.6 2.1E-15 7.2E-20 118.7 9.1 77 149-226 3-88 (96)
240 3md1_A Nuclear and cytoplasmic 99.6 3.1E-15 1.1E-19 114.4 9.8 73 151-224 1-81 (83)
241 2cph_A RNA binding motif prote 99.6 8.9E-15 3E-19 117.5 12.9 81 145-226 9-99 (107)
242 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.7E-15 1.3E-19 128.4 11.1 79 147-226 35-121 (156)
243 2lcw_A RNA-binding protein FUS 99.4 6.6E-17 2.2E-21 132.2 0.0 79 53-133 5-99 (116)
244 3bs9_A Nucleolysin TIA-1 isofo 99.6 3E-15 1E-19 115.5 9.2 75 149-224 4-86 (87)
245 2x1f_A MRNA 3'-END-processing 99.6 3.7E-15 1.3E-19 117.4 9.7 75 150-225 1-83 (96)
246 2ytc_A PRE-mRNA-splicing facto 99.6 5.1E-15 1.7E-19 113.7 10.2 76 146-222 7-85 (85)
247 1u6f_A Tcubp1, RNA-binding pro 99.6 1E-14 3.5E-19 123.0 13.1 80 146-226 37-124 (139)
248 2dgv_A HnRNP M, heterogeneous 99.6 4.6E-15 1.6E-19 115.8 10.1 77 148-225 5-87 (92)
249 2cpz_A CUG triplet repeat RNA- 99.6 3.7E-15 1.3E-19 121.5 9.8 80 146-226 20-107 (115)
250 2cqh_A IGF-II mRNA-binding pro 99.6 2.6E-15 8.8E-20 117.6 8.5 77 148-225 5-84 (93)
251 1p27_B RNA-binding protein 8A; 99.6 5.2E-15 1.8E-19 118.7 10.4 77 148-225 20-104 (106)
252 2cqc_A Arginine/serine-rich sp 99.6 4.6E-15 1.6E-19 116.5 9.5 78 145-223 9-94 (95)
253 3sde_A Paraspeckle component 1 99.6 4.6E-15 1.6E-19 138.9 11.1 119 5-130 52-180 (261)
254 2lmi_A GRSF-1, G-rich sequence 99.6 5.5E-16 1.9E-20 124.9 4.1 74 53-129 9-92 (107)
255 1x4g_A Nucleolysin TIAR; struc 99.6 6E-15 2.1E-19 119.1 10.3 78 148-226 22-101 (109)
256 2hgn_A Heterogeneous nuclear r 99.6 5.3E-16 1.8E-20 130.5 4.1 75 52-130 43-124 (139)
257 3ulh_A THO complex subunit 4; 99.6 5.7E-15 2E-19 118.7 10.0 76 146-222 24-106 (107)
258 1oo0_B CG8781-PA, drosophila Y 99.6 5.8E-15 2E-19 119.3 10.0 78 147-225 22-107 (110)
259 1whx_A Hypothetical protein ri 99.6 4.9E-15 1.7E-19 120.1 9.6 74 150-224 9-84 (111)
260 2do0_A HnRNP M, heterogeneous 99.6 3.1E-14 1E-18 115.8 14.3 77 147-224 11-94 (114)
261 2dng_A Eukaryotic translation 99.6 1.6E-14 5.4E-19 115.3 12.2 78 146-226 10-95 (103)
262 2dgp_A Bruno-like 4, RNA bindi 99.6 8.8E-15 3E-19 117.4 10.7 80 146-226 8-98 (106)
263 2e5j_A Methenyltetrahydrofolat 99.6 9.6E-15 3.3E-19 115.3 10.7 78 146-225 14-95 (97)
264 2lkz_A RNA-binding protein 5; 99.6 2.6E-15 8.9E-20 117.9 7.1 76 147-223 5-94 (95)
265 1wf0_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.3E-20 117.1 6.2 74 53-130 3-79 (88)
266 2dhg_A TRNA selenocysteine ass 99.6 8.4E-15 2.9E-19 117.1 10.2 78 148-226 6-92 (104)
267 2hvz_A Splicing factor, argini 99.6 3.4E-15 1.2E-19 118.7 7.8 73 152-225 1-76 (101)
268 2xs2_A Deleted in azoospermia- 99.6 2.3E-15 8E-20 119.9 6.8 74 53-130 7-87 (102)
269 2err_A Ataxin-2-binding protei 99.6 4.6E-15 1.6E-19 119.8 8.6 79 145-224 23-107 (109)
270 2cpe_A RNA-binding protein EWS 99.6 1E-14 3.5E-19 118.5 10.6 80 146-226 10-105 (113)
271 2jrs_A RNA-binding protein 39; 99.6 1.1E-14 3.9E-19 117.2 10.8 79 145-224 20-106 (108)
272 1x5p_A Negative elongation fac 99.6 2.6E-14 9E-19 112.7 12.6 77 146-225 10-88 (97)
273 2cqd_A RNA-binding region cont 99.6 3E-14 1E-18 116.3 13.4 79 145-225 11-97 (116)
274 2lxi_A RNA-binding protein 10; 99.6 1E-15 3.5E-20 119.4 4.3 74 151-225 1-84 (91)
275 2a3j_A U1 small nuclear ribonu 99.6 9.2E-15 3.2E-19 121.1 10.2 78 147-225 25-111 (127)
276 2la6_A RNA-binding protein FUS 99.6 1.2E-14 4.2E-19 115.1 10.3 77 145-222 7-99 (99)
277 2fc9_A NCL protein; structure 99.6 1.4E-14 4.9E-19 115.1 10.7 78 147-225 11-92 (101)
278 2dha_A FLJ20171 protein; RRM d 99.6 2E-15 6.7E-20 124.3 5.8 75 52-129 20-105 (123)
279 2cpi_A CCR4-NOT transcription 99.6 1.1E-14 3.6E-19 118.1 9.9 78 147-225 11-102 (111)
280 1nu4_A U1A RNA binding domain; 99.6 1E-14 3.5E-19 115.0 9.5 77 148-225 5-90 (97)
281 2ywk_A Putative RNA-binding pr 99.6 6.2E-15 2.1E-19 115.8 8.0 76 147-223 12-94 (95)
282 3ns6_A Eukaryotic translation 99.6 4.3E-15 1.5E-19 118.0 7.0 74 150-224 5-93 (100)
283 2fc8_A NCL protein; structure 99.6 2E-14 6.9E-19 114.4 11.0 80 146-226 10-94 (102)
284 2kxn_B Transformer-2 protein h 99.6 1.1E-14 3.7E-19 121.3 9.7 79 146-225 41-127 (129)
285 2hgm_A HNRPF protein, heteroge 99.6 4.2E-15 1.4E-19 122.7 7.0 73 53-129 40-121 (126)
286 2khc_A Testis-specific RNP-typ 99.6 1.5E-14 5.3E-19 118.3 10.3 76 146-222 35-118 (118)
287 2diu_A KIAA0430 protein; struc 99.6 8.9E-15 3.1E-19 112.3 8.1 76 148-226 5-86 (96)
288 2cq2_A Hypothetical protein LO 99.6 9.9E-15 3.4E-19 117.8 8.8 77 148-225 22-107 (114)
289 2la4_A Nuclear and cytoplasmic 99.6 5.4E-15 1.8E-19 117.6 7.1 75 148-223 24-100 (101)
290 2cpx_A Hypothetical protein FL 99.6 2.4E-14 8.2E-19 116.6 11.1 79 147-226 21-107 (115)
291 3u1l_A PRE-mRNA-splicing facto 99.5 6.2E-15 2.1E-19 134.7 7.8 79 52-130 131-230 (240)
292 2nlw_A Eukaryotic translation 99.5 1.3E-14 4.5E-19 116.2 8.6 77 147-224 11-100 (105)
293 2div_A TRNA selenocysteine ass 99.5 1.2E-14 4.1E-19 115.1 7.9 76 148-224 6-94 (99)
294 2dh8_A DAZ-associated protein 99.5 1.4E-14 4.8E-19 116.0 8.2 80 145-226 10-97 (105)
295 2cqp_A RNA-binding protein 12; 99.5 1.4E-14 4.9E-19 114.4 8.1 77 147-224 11-95 (98)
296 1s79_A Lupus LA protein; RRM, 99.5 1.6E-14 5.4E-19 115.3 8.3 74 148-223 8-88 (103)
297 3p5t_L Cleavage and polyadenyl 99.5 3.9E-15 1.3E-19 115.8 4.7 73 152-225 2-84 (90)
298 3lqv_A PRE-mRNA branch site pr 99.5 3.4E-14 1.2E-18 115.7 10.5 76 148-224 5-85 (115)
299 1p1t_A Cleavage stimulation fa 99.5 1.4E-14 4.8E-19 115.7 7.6 75 150-225 7-89 (104)
300 2j8a_A Histone-lysine N-methyl 99.5 1.6E-14 5.6E-19 117.2 7.7 71 56-128 3-95 (136)
301 3ucg_A Polyadenylate-binding p 99.5 2.6E-14 8.9E-19 110.7 8.6 72 151-224 6-85 (89)
302 2cqg_A TDP-43, TAR DNA-binding 99.5 8.2E-14 2.8E-18 111.1 11.7 78 146-226 10-95 (103)
303 2dis_A Unnamed protein product 99.5 5.5E-14 1.9E-18 113.3 10.6 77 149-226 6-94 (109)
304 2e5g_A U6 snRNA-specific termi 99.5 5E-14 1.7E-18 110.4 9.9 76 149-226 6-84 (94)
305 2kt5_A RNA and export factor-b 99.5 4.6E-14 1.6E-18 116.6 10.0 79 146-225 30-115 (124)
306 2krb_A Eukaryotic translation 99.5 1.7E-14 5.7E-19 109.9 6.7 66 152-218 2-80 (81)
307 2pe8_A Splicing factor 45; RRM 99.5 5.6E-14 1.9E-18 112.4 9.9 76 52-129 5-94 (105)
308 1wg5_A Heterogeneous nuclear r 99.5 1.6E-13 5.5E-18 109.7 12.6 77 147-225 11-95 (104)
309 2e5i_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 115.3 10.2 72 153-225 27-103 (124)
310 2dgw_A Probable RNA-binding pr 99.5 6.4E-14 2.2E-18 109.1 9.8 75 148-225 7-88 (91)
311 1x4b_A Heterogeneous nuclear r 99.5 3.6E-14 1.2E-18 115.8 8.7 76 149-226 25-108 (116)
312 3s7r_A Heterogeneous nuclear r 99.5 5.7E-14 1.9E-18 108.3 9.4 73 147-221 7-87 (87)
313 3zzy_A Polypyrimidine tract-bi 99.5 5.2E-14 1.8E-18 116.2 9.7 73 151-224 28-106 (130)
314 2e44_A Insulin-like growth fac 99.5 6.8E-14 2.3E-18 110.0 10.0 76 148-224 12-92 (96)
315 2jwn_A Embryonic polyadenylate 99.5 5.1E-14 1.7E-18 116.3 9.5 72 151-224 36-115 (124)
316 1fjc_A Nucleolin RBD2, protein 99.5 3.4E-14 1.1E-18 111.8 8.0 78 147-225 12-92 (96)
317 3n9u_C Cleavage and polyadenyl 99.5 3.9E-14 1.3E-18 121.8 9.0 73 150-223 54-136 (156)
318 1wez_A HnRNP H', FTP-3, hetero 99.5 8.1E-14 2.8E-18 111.0 10.1 76 147-225 11-93 (102)
319 2ek1_A RNA-binding protein 12; 99.5 1.2E-14 4.1E-19 114.1 5.2 75 148-223 12-94 (95)
320 1x4e_A RNA binding motif, sing 99.5 1.3E-14 4.3E-19 111.5 5.2 72 149-221 3-82 (85)
321 2cq4_A RNA binding motif prote 99.5 2.6E-14 9E-19 116.2 7.3 73 150-224 24-104 (114)
322 2dit_A HIV TAT specific factor 99.5 9.4E-14 3.2E-18 112.6 10.6 77 52-130 12-103 (112)
323 1x5o_A RNA binding motif, sing 99.5 1.8E-13 6E-18 111.2 12.1 78 146-224 20-112 (114)
324 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.4E-14 8.1E-19 113.7 6.7 76 146-224 14-98 (100)
325 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 8.2E-14 2.8E-18 117.4 10.2 76 145-221 57-140 (140)
326 1wg1_A KIAA1579 protein, homol 99.5 4.2E-14 1.4E-18 109.4 7.7 73 150-224 4-78 (88)
327 1sjr_A Polypyrimidine tract-bi 99.5 6.4E-14 2.2E-18 120.0 9.4 73 151-224 46-124 (164)
328 2dnl_A Cytoplasmic polyadenyla 99.5 4.4E-14 1.5E-18 115.0 7.9 69 53-126 6-85 (114)
329 2hgl_A HNRPF protein, heteroge 99.5 3.2E-14 1.1E-18 119.2 7.1 76 147-224 40-125 (136)
330 2voo_A Lupus LA protein; RNA-b 99.5 5.3E-14 1.8E-18 125.4 8.9 73 54-129 108-187 (193)
331 2mss_A Protein (musashi1); RNA 99.5 2.7E-14 9.4E-19 106.9 5.8 67 153-221 1-75 (75)
332 2rs2_A Musashi-1, RNA-binding 99.5 1.1E-13 3.8E-18 111.6 9.6 77 147-225 21-105 (109)
333 2hgn_A Heterogeneous nuclear r 99.5 1.7E-14 5.7E-19 121.4 4.5 117 89-225 1-124 (139)
334 2cpy_A RNA-binding protein 12; 99.5 8.2E-14 2.8E-18 113.3 8.1 77 147-225 11-95 (114)
335 2m2b_A RNA-binding protein 10; 99.5 3.8E-14 1.3E-18 118.3 6.1 76 147-224 19-108 (131)
336 2bz2_A Negative elongation fac 99.5 1.4E-13 4.8E-18 113.2 9.3 76 147-225 35-112 (121)
337 2db1_A Heterogeneous nuclear r 99.5 7E-14 2.4E-18 114.5 7.3 76 147-224 13-98 (118)
338 1wel_A RNA-binding protein 12; 99.5 3.8E-14 1.3E-18 117.1 5.7 76 147-224 21-104 (124)
339 2ki2_A SS-DNA binding protein 99.5 2.2E-14 7.6E-19 111.4 4.0 72 152-225 2-81 (90)
340 1uaw_A Mouse-musashi-1; RNP-ty 99.5 5.2E-14 1.8E-18 105.8 5.7 68 152-221 1-76 (77)
341 1fj7_A Nucleolin RBD1, protein 99.5 4.1E-14 1.4E-18 112.4 5.1 76 148-225 14-96 (101)
342 2f3j_A RNA and export factor b 99.4 2E-13 6.7E-18 120.0 9.5 77 147-224 84-167 (177)
343 2lcw_A RNA-binding protein FUS 99.2 7E-15 2.4E-19 120.1 0.0 79 148-227 4-98 (116)
344 3d2w_A TAR DNA-binding protein 99.4 2.5E-13 8.6E-18 105.3 8.8 74 147-225 7-85 (89)
345 3q2s_C Cleavage and polyadenyl 99.4 1.1E-13 3.7E-18 126.8 7.8 74 150-224 67-150 (229)
346 3egn_A RNA-binding protein 40; 99.4 1.4E-13 4.8E-18 116.6 7.7 77 148-225 42-131 (143)
347 2hzc_A Splicing factor U2AF 65 99.4 2E-13 6.8E-18 105.2 7.8 70 149-220 4-86 (87)
348 2dnn_A RNA-binding protein 12; 99.4 1.9E-13 6.6E-18 110.0 8.0 73 149-224 14-93 (109)
349 2lmi_A GRSF-1, G-rich sequence 99.4 1.1E-13 3.7E-18 111.3 6.0 76 147-224 7-92 (107)
350 3tht_A Alkylated DNA repair pr 99.4 2.7E-13 9.1E-18 130.5 9.4 76 52-127 15-97 (345)
351 1wf0_A TDP-43, TAR DNA-binding 99.4 1.5E-13 5.1E-18 106.2 6.2 75 149-226 3-80 (88)
352 2dit_A HIV TAT specific factor 99.4 1.3E-12 4.4E-17 105.8 11.7 79 146-225 10-103 (112)
353 3u1l_A PRE-mRNA-splicing facto 99.4 4.7E-13 1.6E-17 122.3 8.6 77 148-225 131-230 (240)
354 3v4m_A Splicing factor U2AF 65 99.4 6.5E-13 2.2E-17 106.2 8.4 74 54-129 4-97 (105)
355 1iqt_A AUF1, heterogeneous nuc 99.4 1.3E-13 4.4E-18 103.1 3.5 67 153-221 1-75 (75)
356 2pe8_A Splicing factor 45; RRM 99.4 1.1E-12 3.9E-17 104.7 9.2 76 148-223 5-93 (105)
357 2xs2_A Deleted in azoospermia- 99.4 3.2E-13 1.1E-17 107.4 5.1 74 149-225 7-87 (102)
358 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.5E-12 8.6E-17 101.6 9.9 62 65-130 27-91 (100)
359 2dha_A FLJ20171 protein; RRM d 99.4 4.2E-13 1.4E-17 110.4 4.9 74 149-224 21-105 (123)
360 2hgm_A HNRPF protein, heteroge 99.4 1.4E-12 4.7E-17 107.5 7.8 74 147-223 38-120 (126)
361 2voo_A Lupus LA protein; RNA-b 99.3 5.4E-12 1.9E-16 112.3 11.8 115 98-223 63-186 (193)
362 1jmt_A Splicing factor U2AF 35 99.3 3.2E-13 1.1E-17 107.8 3.2 65 60-126 20-103 (104)
363 3ue2_A Poly(U)-binding-splicin 99.3 4E-12 1.4E-16 103.6 9.1 74 54-129 19-109 (118)
364 3s6e_A RNA-binding protein 39; 99.3 5.9E-12 2E-16 101.9 9.0 75 53-129 5-93 (114)
365 2dnl_A Cytoplasmic polyadenyla 99.3 1.2E-11 4.3E-16 100.3 10.0 70 148-221 5-85 (114)
366 3v4m_A Splicing factor U2AF 65 99.3 1.2E-11 4E-16 98.8 9.1 75 149-223 3-96 (105)
367 3ue2_A Poly(U)-binding-splicin 99.2 3E-11 1E-15 98.4 9.0 74 150-223 19-108 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 99.2 9.8E-11 3.4E-15 92.4 11.7 62 162-225 27-91 (100)
369 3s6e_A RNA-binding protein 39; 99.2 3.6E-11 1.2E-15 97.3 9.2 76 148-223 4-92 (114)
370 2j8a_A Histone-lysine N-methyl 99.2 1.6E-11 5.4E-16 99.7 5.7 71 152-223 3-95 (136)
371 3tht_A Alkylated DNA repair pr 99.2 3.3E-11 1.1E-15 115.9 8.7 76 147-222 14-97 (345)
372 1owx_A Lupus LA protein, SS-B, 99.2 1E-10 3.6E-15 94.8 9.0 75 52-128 15-95 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 9.1E-11 3.1E-15 89.2 7.8 72 55-129 7-86 (91)
374 1jmt_A Splicing factor U2AF 35 99.1 1.2E-11 4.2E-16 98.5 2.4 64 157-221 21-103 (104)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 2.2E-10 7.5E-15 87.1 8.2 76 148-224 4-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.1 8.8E-10 3E-14 89.3 10.8 78 145-223 12-95 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 1.3E-09 4.4E-14 83.2 6.1 72 53-127 13-93 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.8 4E-09 1.4E-13 80.5 5.4 75 147-222 11-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.6 4E-08 1.4E-12 89.2 7.1 73 55-129 124-213 (222)
380 3dxb_A Thioredoxin N-terminall 98.5 1.9E-07 6.5E-12 84.6 7.5 59 165-223 142-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 9.5E-07 3.3E-11 68.7 9.4 71 53-125 19-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.1 4.8E-06 1.6E-10 64.8 6.9 69 151-220 21-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.1 1.9E-05 6.4E-10 61.0 9.6 69 55-126 8-81 (104)
384 1wey_A Calcipressin 1; structu 98.0 2.4E-05 8.1E-10 60.7 8.6 73 55-129 5-84 (104)
385 1wwh_A Nucleoporin 35, nucleop 97.7 0.00015 5E-09 57.9 8.3 71 54-127 23-95 (119)
386 1whv_A Poly(A)-specific ribonu 97.7 9.2E-05 3.2E-09 56.4 6.8 55 55-110 16-70 (100)
387 3ctr_A Poly(A)-specific ribonu 97.6 9.1E-05 3.1E-09 56.6 5.4 54 56-110 7-60 (101)
388 1wey_A Calcipressin 1; structu 97.5 6.8E-05 2.3E-09 58.1 4.2 74 151-224 5-84 (104)
389 1uw4_A UPF3X; nonsense mediate 97.5 0.00031 1.1E-08 53.5 7.5 60 56-115 2-71 (91)
390 2dhx_A Poly (ADP-ribose) polym 97.2 0.0036 1.2E-07 48.3 10.4 73 150-224 7-84 (104)
391 1wwh_A Nucleoporin 35, nucleop 97.0 0.0023 8E-08 50.9 7.6 70 149-221 22-94 (119)
392 1whv_A Poly(A)-specific ribonu 96.9 0.0063 2.2E-07 46.3 9.0 55 151-207 16-70 (100)
393 2l08_A Regulator of nonsense t 96.8 0.0024 8.3E-08 48.9 5.9 73 55-127 9-94 (97)
394 3p3d_A Nucleoporin 53; structu 96.7 0.0017 5.9E-08 52.4 5.1 69 55-127 7-97 (132)
395 3ctr_A Poly(A)-specific ribonu 96.5 0.0038 1.3E-07 47.7 5.0 53 153-207 8-60 (101)
396 1uw4_A UPF3X; nonsense mediate 95.9 0.026 8.9E-07 42.8 7.1 70 152-222 2-86 (91)
397 3pq1_A Poly(A) RNA polymerase; 95.8 0.0041 1.4E-07 61.7 3.2 59 54-114 52-113 (464)
398 3p3d_A Nucleoporin 53; structu 95.7 0.011 3.7E-07 47.7 4.8 69 151-222 7-97 (132)
399 2l08_A Regulator of nonsense t 93.8 0.13 4.3E-06 39.3 5.8 71 151-222 9-94 (97)
400 3d45_A Poly(A)-specific ribonu 93.3 0.14 4.9E-06 51.5 7.3 56 55-111 440-495 (507)
401 3pq1_A Poly(A) RNA polymerase; 91.7 0.08 2.8E-06 52.4 2.9 52 152-205 54-108 (464)
402 4eyt_A Telomerase associated p 89.2 3.9 0.00013 30.2 9.2 69 53-125 10-78 (129)
403 4eyt_A Telomerase associated p 85.9 5.9 0.0002 29.2 8.5 57 149-206 10-66 (129)
404 2g0c_A ATP-dependent RNA helic 85.7 1.6 5.6E-05 31.3 5.7 69 153-222 2-75 (76)
405 2g0c_A ATP-dependent RNA helic 83.6 2.4 8.2E-05 30.4 5.8 67 57-127 2-75 (76)
406 3d45_A Poly(A)-specific ribonu 83.3 2.3 7.9E-05 42.7 7.4 56 151-208 440-495 (507)
407 3ts2_A Protein LIN-28 homolog 61.0 2 6.8E-05 35.5 0.3 29 166-194 1-29 (148)
408 3ts2_A Protein LIN-28 homolog 60.2 1.4 4.8E-05 36.4 -0.7 30 69-98 1-30 (148)
409 2e5p_A Protein PHF1, PHD finge 56.4 4.6 0.00016 28.0 1.5 21 79-99 27-47 (68)
410 2m0o_A PHD finger protein 1; t 54.9 5 0.00017 28.6 1.5 22 79-100 44-65 (79)
411 3lpe_A Putative transcription 51.6 37 0.0013 25.1 6.1 31 82-112 40-73 (92)
412 2e5q_A PHD finger protein 19; 47.6 3.5 0.00012 28.2 -0.3 20 80-99 26-45 (63)
413 2eqj_A Metal-response element- 45.6 8.9 0.0003 26.7 1.5 20 80-99 32-51 (66)
414 4hcz_A PHD finger protein 1; p 40.4 12 0.00041 25.2 1.5 22 79-100 21-42 (58)
415 3lpe_A Putative transcription 40.1 59 0.002 24.0 5.6 31 178-208 39-72 (92)
416 4e8u_A Putative uncharacterize 36.4 47 0.0016 27.8 4.9 45 57-101 14-74 (172)
417 3fry_A Probable copper-exporti 35.0 81 0.0028 21.3 5.5 53 56-109 7-61 (73)
418 2cu1_A Mitogen-activated prote 31.8 62 0.0021 24.4 4.3 65 62-129 23-88 (103)
419 4a4j_A Pacszia, cation-transpo 27.5 1.2E+02 0.0042 19.8 5.3 46 56-101 4-51 (69)
420 2npt_B Mitogen-activated prote 27.4 1.5E+02 0.0052 22.0 5.7 61 62-125 35-96 (100)
421 2jrh_A Mitogen-activated prote 26.4 1.9E+02 0.0066 21.2 6.7 66 62-130 19-85 (94)
422 4bby_A Alkyldihydroxyacetoneph 25.5 44 0.0015 34.5 3.6 49 62-110 350-409 (658)
423 2xk0_A Polycomb protein PCL; t 25.3 30 0.001 24.1 1.5 19 80-100 34-52 (69)
424 3fut_A Dimethyladenosine trans 25.0 1.4E+02 0.0047 26.8 6.5 27 56-83 111-137 (271)
425 2c60_A Human mitogen-activated 24.1 1.5E+02 0.0052 22.3 5.2 61 62-125 46-107 (111)
426 2od0_A Hypothetical protein VP 22.7 66 0.0023 24.3 3.3 27 67-93 4-30 (105)
427 3h7h_B Transcription elongatio 22.6 73 0.0025 24.3 3.5 32 178-209 40-74 (106)
428 2gu3_A YPMB protein; APC1927, 22.6 54 0.0019 26.3 2.9 28 60-87 68-98 (136)
429 3h7h_B Transcription elongatio 22.4 78 0.0027 24.2 3.6 32 81-112 40-74 (106)
430 3dxs_X Copper-transporting ATP 22.4 1.8E+02 0.006 19.3 6.0 52 57-108 5-62 (74)
431 3ftd_A Dimethyladenosine trans 21.6 1.5E+02 0.0053 26.0 6.1 28 56-83 96-123 (249)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=2.8e-32 Score=248.75 Aligned_cols=155 Identities=23% Similarity=0.449 Sum_probs=138.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
.++++|||+|||+++|+++|+++|++||+|++|.|. +|||||+|.+.++|++||+.||+..+ .|+.|.|.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccccc
Confidence 457899999999999999999999999999999983 68999999999999999999999999 89999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQED 198 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~ 198 (426)
++...... ......+|||+|| +..+++++|+++|.+||.|+.|.|. +|||||+|.+.++
T Consensus 91 ~~~~~~~~--------------~~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 91 WSQRDPSL--------------RKSGVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp ECCCCTHH--------------HHHCTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred cccccccc--------------cccccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 98654311 1123468999999 7899999999999999999999984 6899999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 199 ATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 199 A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
|.+|++.|||..|+|+.|.|.+|..+
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999999999999999764
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-31 Score=231.51 Aligned_cols=150 Identities=20% Similarity=0.444 Sum_probs=137.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
++|||+|||.++|+++|+++|+.||+|.+|.|. +|||||+|.+.++|++|++.|||..| .|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcCC
Confidence 589999999999999999999999999999993 68999999999999999999999999 799999999865
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHH
Q 014331 129 ERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDAT 200 (426)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~ 200 (426)
... ....+..+|||+|| |..+++++|+++|++||.|..+.+. +|+|||+|.+.++|.
T Consensus 79 ~~~--------------~~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 143 (166)
T 3md3_A 79 SQQ--------------SSSDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 143 (166)
T ss_dssp CCC--------------CCCTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCC--------------CCCCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Confidence 431 23445789999999 7889999999999999999999985 569999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEEee
Q 014331 201 RALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 201 ~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
+|+..|||..++|+.|.|.||+
T Consensus 144 ~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 144 NAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999986
No 3
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.5e-31 Score=251.10 Aligned_cols=193 Identities=20% Similarity=0.219 Sum_probs=167.2
Q ss_pred eeEEEEecCCchhHHhhhcCCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE--
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDM-- 87 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i-- 87 (426)
..++||.|...+++++++.+++..+.+..+.... ...++|||+|||..+|+++|.++|..|| .|..|.|
T Consensus 81 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~--------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAITKTHKVVGQNEIIVSH--------LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp SEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE--------CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred cEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE--------CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 4689999999999999998888888777665432 3578999999999999999999999999 9999998
Q ss_pred -----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCC
Q 014331 88 -----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPY 162 (426)
Q Consensus 88 -----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~ 162 (426)
.+|||||+|.+.++|.+||+.|||..| .|+.|.|.|+......... ........+|||+|| |.
T Consensus 153 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~~~~~---------~~~~~~~~~l~v~nl-p~ 220 (292)
T 2ghp_A 153 LRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTKVSNPLEKSKRT---------DSATLEGREIMIRNL-ST 220 (292)
T ss_dssp ------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCCC------------------CCTTTEEEEEEE-CT
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCcccccc---------cccCCCCceEEEECC-Cc
Confidence 379999999999999999999999999 8999999999765422111 123456789999999 78
Q ss_pred C-CCHHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 163 H-TRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 163 ~-~~~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
. +++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+..+
T Consensus 221 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 221 ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 8 9999999999999999999984 469999999999999999 99999999999999999864
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-30 Score=228.46 Aligned_cols=149 Identities=27% Similarity=0.460 Sum_probs=136.5
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
..++|||+|||.++|+++|+++|+.||+|..|.|. +|||||+|.+.++|++|++.|||..| .|+.|.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 35799999999999999999999999999999982 58999999999999999999999999 799999999
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 197 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~ 197 (426)
+.... ......+|||+|| |..+++++|+++|++||.|..+.+. +|+|||+|.+.+
T Consensus 80 ~~~~~----------------~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 80 ARPGG----------------ESIKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCCCS----------------STTTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCCCc----------------ccCCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 87543 2345689999999 7889999999999999999999884 379999999999
Q ss_pred HHHHHHHHcCCCCCCC--ceEEEEEe
Q 014331 198 DATRALDATNMSKLTD--RVISVEYA 221 (426)
Q Consensus 198 ~A~~A~~~l~g~~~~g--~~l~v~~a 221 (426)
+|.+|+..|||..+.| +.|.|.||
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999988 99999986
No 5
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.1e-30 Score=246.65 Aligned_cols=194 Identities=18% Similarity=0.161 Sum_probs=167.8
Q ss_pred eeeeEEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 014331 9 QCHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 87 (426)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i 87 (426)
.+..++||.|.+.+++++++. +++..+.+..+.... ....++|||+|||..+|+++|.++|+.||.|..|.|
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i 127 (284)
T 3smz_A 55 KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFL 127 (284)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEE
Confidence 344689999999999999985 577777776655432 234679999999999999999999999999999987
Q ss_pred e--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecC
Q 014331 88 K--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINF 159 (426)
Q Consensus 88 ~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 159 (426)
. +|||||+|.+.++|.+|++.|||..| .|+.|.|.|+..... ........+|||+||
T Consensus 128 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~a~~~~~-------------~~~~~~~~~l~v~nl 192 (284)
T 3smz_A 128 VYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHWTDAGQL-------------TPALLHSRCLCVDRL 192 (284)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCGGGC-------------CTTTTSCSEEEEECC
T ss_pred EeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCCC-------------CcccCCccEEEEecC
Confidence 3 68999999999999999999999999 799999999976542 122356789999999
Q ss_pred CCCC-CCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 160 DPYH-TRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 160 ~p~~-~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
|.. +++++|+++|+.||.|..|.|. +|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+..+.
T Consensus 193 -p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 193 -PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp -CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred -CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 677 5899999999999999999884 5799999999999999999999999999999999998754
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.5e-30 Score=233.49 Aligned_cols=161 Identities=20% Similarity=0.383 Sum_probs=134.3
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||+++|+++|+++|+.||+|.+|.|. +|||||+|.+.++|++||+. ++..| .|+.|.|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~v 86 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVEP 86 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEeee
Confidence 4557899999999999999999999999999999983 67999999999999999954 89999 8999999
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecC
Q 014331 124 EWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV 195 (426)
Q Consensus 124 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~ 195 (426)
.++........ ........+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+
T Consensus 87 ~~~~~~~~~~~----------~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 87 KRAVSREDSQR----------PGAHLTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp EECCC---------------------CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ecccCcccccc----------cccCCCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 99876542211 122445689999999 7889999999999999999999985 5799999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEEeecCCCC
Q 014331 196 QEDATRALDATNMSKLTDRVISVEYAVRDDDD 227 (426)
Q Consensus 196 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 227 (426)
.++|.+|+.. +|..|+|+.|.|.++..+...
T Consensus 156 ~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999986 799999999999999886543
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.1e-30 Score=226.05 Aligned_cols=148 Identities=24% Similarity=0.489 Sum_probs=134.5
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++|++.|||..| .|+.|.|.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 4789999999999999999999999999999983 48999999999999999999999999 7999999998
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHH
Q 014331 127 KHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQED 198 (426)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~ 198 (426)
.... ......+|||+|| |..+++++|+++|++||.|..+.+. +|+|||+|.+.++
T Consensus 80 ~~~~----------------~~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 80 RPSS----------------ASIRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp CCCC----------------GGGTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCCc----------------ccCCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 7543 1234678999999 7889999999999999999999884 5799999999999
Q ss_pred HHHHHHHcCCCCCCCce--EEEEEe
Q 014331 199 ATRALDATNMSKLTDRV--ISVEYA 221 (426)
Q Consensus 199 A~~A~~~l~g~~~~g~~--l~v~~a 221 (426)
|.+|++.|||..+.|+. |.|.||
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999965 888876
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.3e-30 Score=236.92 Aligned_cols=171 Identities=23% Similarity=0.328 Sum_probs=144.6
Q ss_pred hccCCCccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 50 FEVAMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 50 ~~~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
......++|||+|||. .+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 3345689999999999 99999999999999999999995 79999999999999999999999999 899999999
Q ss_pred eeccCCCCCCCCC-------------------CCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEE-
Q 014331 126 TKHERGIRRPGGG-------------------SSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRI- 184 (426)
Q Consensus 126 a~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i- 184 (426)
+............ ...........+..+|||+|| +..+++++|+++|.+|| .|..|.+
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 9765311100000 000000122456799999999 78899999999999999 9999999
Q ss_pred --ecCEEEEEecCHHHHHHHHHHcCCCCCC-CceEEEEEeec
Q 014331 185 --RRNFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAVR 223 (426)
Q Consensus 185 --~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 223 (426)
.+|+|||+|.+.++|.+|+..|||..|. |+.|.|.|++.
T Consensus 186 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred ECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 4789999999999999999999999999 99999999975
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.8e-30 Score=233.72 Aligned_cols=165 Identities=18% Similarity=0.272 Sum_probs=136.3
Q ss_pred CCccEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 54 MMRPIFCGNFE-YDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 54 ~~~~l~V~nLp-~~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
..++|||+||+ ..+|+++|+++|+.||.|.+|+|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEEEccCC
Confidence 46799999999 899999999999999999999994 79999999999999999999999999 8999999999754
Q ss_pred CCCCCC-----CCCC---------CCC-------CCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCce--EEEEEe-
Q 014331 130 RGIRRP-----GGGS---------SAR-------RPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI--ISVRIR- 185 (426)
Q Consensus 130 ~~~~~~-----~~~~---------~~~-------~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v--~~v~i~- 185 (426)
...... .... ... .......+..+|||+|| |..+++++|+++|++||.| ..|.+.
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 321110 0000 000 00112356789999999 7899999999999999998 788874
Q ss_pred -----cCEEEEEecCHHHHHHHHHHcCCCCCCCc----eEEEEEe
Q 014331 186 -----RNFAFVQYEVQEDATRALDATNMSKLTDR----VISVEYA 221 (426)
Q Consensus 186 -----~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l~v~~a 221 (426)
+|+|||+|.+.++|.+||..|||..|.|. .+.|.++
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 37999999999999999999999999986 5777665
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=7e-30 Score=232.68 Aligned_cols=165 Identities=21% Similarity=0.427 Sum_probs=140.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||.++|+++|+++|+.||+|..|.| .+|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 34789999999999999999999999999999999 379999999999999999999999999 79999998
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQ 196 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~ 196 (426)
++.......... ...........+|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.
T Consensus 104 ~~~~~~~~~~~~-----~~~~~~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 104 RPSNIGQAQPII-----DQLAEEARAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCSCCGGGHHHH-----HHHHHHHTTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cCCCccccchhh-----hhhhcccCCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 875543110000 000011245689999999 7889999999999999999999995 57999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 197 EDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 197 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
++|.+|+..|||..|+|+.|.|.++....
T Consensus 178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 99999999999999999999999998753
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.2e-29 Score=241.17 Aligned_cols=169 Identities=22% Similarity=0.432 Sum_probs=141.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
....++|||+|||..+|+++|+ ++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee--CCcEEE
Confidence 3568899999999999999966 999999999999984 69999999999999999999999999 899999
Q ss_pred EEEeeccCCCCCCCCCC-------------------------------------C-------------------------
Q 014331 123 VEWTKHERGIRRPGGGS-------------------------------------S------------------------- 140 (426)
Q Consensus 123 V~~a~~~~~~~~~~~~~-------------------------------------~------------------------- 140 (426)
|.|+...........+. .
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99997654210000000 0
Q ss_pred -------------C--------------------CCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--
Q 014331 141 -------------A--------------------RRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-- 185 (426)
Q Consensus 141 -------------~--------------------~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-- 185 (426)
. ........+.++|||+|| +..+++++|+++|++||.|..|.|.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 0 000123345688999999 7899999999999999999999995
Q ss_pred -cCEEEEEecCHHHHHHHHHHcCCCCCC-CceEEEEEeec
Q 014331 186 -RNFAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAVR 223 (426)
Q Consensus 186 -~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 223 (426)
+|||||+|.+.++|.+|++.|||..|. |+.|.|.|++.
T Consensus 243 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 243 RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 489999999999999999999999999 99999999863
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=6.3e-30 Score=224.57 Aligned_cols=148 Identities=19% Similarity=0.384 Sum_probs=134.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRY----G-------KVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~ 120 (426)
+.++|||+|||+++|+++|+++|+.| | .|..+.+ .+|||||+|.+.++|++|| .|||..| .|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEE--TTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEe--cCce
Confidence 46899999999999999999999999 7 7888887 4899999999999999999 9999999 8999
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEE
Q 014331 121 LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQ 192 (426)
Q Consensus 121 i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~ 192 (426)
|.|.++.... ......+|||+|| |..+++++|+++|++||.|..|.+. +|+|||+
T Consensus 80 i~v~~~~~~~----------------~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 80 LKIRRPHDYQ----------------PLPGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp CEEECCSSCC----------------CCTTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred eeecCCcccC----------------CCCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEE
Confidence 9999875433 1233789999999 7899999999999999999999984 4699999
Q ss_pred ecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 193 YEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 193 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
|.+.++|.+|++.|||..|+|+.|.|.||
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999999997
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.4e-29 Score=227.52 Aligned_cols=168 Identities=17% Similarity=0.330 Sum_probs=141.4
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRY----G-------KVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~ 120 (426)
..++|||+|||+.+|+++|+++|+.| | .|..+.+ .+|||||+|.+.++|++|| .|||..| .|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~--~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEE--TTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEE--cCce
Confidence 46899999999999999999999999 6 7777777 4899999999999999999 9999999 8999
Q ss_pred EEEEEeeccCCCCCCCC----CCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCE
Q 014331 121 LRVEWTKHERGIRRPGG----GSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNF 188 (426)
Q Consensus 121 i~V~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~ 188 (426)
|.|.++........... ............+..+|||+|| |..+++++|+++|.+||.|..|.+. +||
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~ 158 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 158 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceE
Confidence 99999876542211100 0001112223466799999999 7899999999999999999999985 579
Q ss_pred EEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 189 AFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 189 afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
|||+|.+.++|.+|++.|||..|+|+.|.|.++....
T Consensus 159 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 159 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999998753
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=9.6e-30 Score=229.00 Aligned_cols=166 Identities=24% Similarity=0.357 Sum_probs=141.7
Q ss_pred CccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 55 MRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 55 ~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.++|||+|||+ .+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEEEecCCC
Confidence 57999999999 99999999999999999999995 79999999999999999999999999 89999999997653
Q ss_pred CCCCCCC----C---------------CCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEE---ecC
Q 014331 131 GIRRPGG----G---------------SSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRI---RRN 187 (426)
Q Consensus 131 ~~~~~~~----~---------------~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i---~~g 187 (426)
....... . ...........+..+|||+|| +..+++++|+++|.+|| .|..|.+ .+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESSTTSS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeCCCc
Confidence 1110000 0 000111122456899999999 78899999999999999 9999999 368
Q ss_pred EEEEEecCHHHHHHHHHHcCCCCCC-CceEEEEEeec
Q 014331 188 FAFVQYEVQEDATRALDATNMSKLT-DRVISVEYAVR 223 (426)
Q Consensus 188 ~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~ 223 (426)
+|||+|.+.++|.+|+..|||..++ |+.|.|.|++.
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 9999999999999999999999999 99999999975
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.9e-29 Score=221.88 Aligned_cols=153 Identities=22% Similarity=0.351 Sum_probs=133.7
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcChHhHHHHHHhcCCceec-CCCcEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRTEFG-RKGRRLR 122 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~----------~g~aFV~F~~~~~A~~Al~~lng~~~~-~~g~~i~ 122 (426)
..++|||+|||+++|+++|+++|+.||+|.+|.|. +|||||+|.+.++|++|++.|||..+. ..+..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999883 579999999999999999999998762 1267888
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecC
Q 014331 123 VEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEV 195 (426)
Q Consensus 123 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~ 195 (426)
|.++..... ......+|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+
T Consensus 82 ~~~~~~~~~---------------~~~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 82 MKPADSEKN---------------NAVEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp EEECGGGCC---------------SCGGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred Ecccccccc---------------ccCCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 888765441 2335679999999 7889999999999999999999985 5699999999
Q ss_pred HHHHHHHHHHcCCCCCC---CceEEEEEee
Q 014331 196 QEDATRALDATNMSKLT---DRVISVEYAV 222 (426)
Q Consensus 196 ~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 222 (426)
.++|.+|++.|||..+. |+.|.|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998776 4999999973
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=5.7e-30 Score=225.71 Aligned_cols=155 Identities=18% Similarity=0.340 Sum_probs=135.3
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||..+|+++|+++|..||.|..+.| .+|||||+|.+.++|++|| .|||..| .|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~v~ 86 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIKLE 86 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEEEe
Confidence 456889999999999999999999999986554222 4799999999999999999 6999999 79999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE---ecCEEEEEecCHHHHHH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATR 201 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~ 201 (426)
++..... .......+|||+|| |..+++++|+++|++||.|..+.. .+|||||+|.+.++|.+
T Consensus 87 ~~~~~~~--------------~~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 87 KPKGRDS--------------KKVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCCCSSC--------------STTGGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHH
T ss_pred cCCCccc--------------cccccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHH
Confidence 9876431 12345789999999 788999999999999999988821 36899999999999999
Q ss_pred HHHHcCCCCCCCceEEEEEeecC
Q 014331 202 ALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 202 A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
|+..|||..|+|+.|.|.|+.++
T Consensus 152 A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999764
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=5.6e-30 Score=223.76 Aligned_cols=149 Identities=20% Similarity=0.473 Sum_probs=133.0
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
..++|||+|||.++|+++|+++|+.||+|.+|.|. +|||||+|.+.++|++||+. +..| .|+.|.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 36799999999999999999999999999999983 68999999999999999974 5677 799999998
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHH
Q 014331 126 TKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQE 197 (426)
Q Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~ 197 (426)
+.... ...+..+|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.+
T Consensus 78 ~~~~~----------------~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 78 AIPRD----------------EQDKTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 140 (167)
T ss_dssp CCCHH----------------HHHHCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH
T ss_pred ccchh----------------hccCCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH
Confidence 86543 1234579999999 7899999999999999999999985 469999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 198 DATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 198 ~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
+|.+|++ ++|..++|+.|.|.+|.++
T Consensus 141 ~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999998 8999999999999999764
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2.2e-28 Score=229.92 Aligned_cols=148 Identities=30% Similarity=0.432 Sum_probs=135.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||+++|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+||..|||..| .|+.|.|.|+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~a~~-- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTIL--KSRPLRIRFATH-- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEECCC--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEE--CCceeEeeeccc--
Confidence 456899999999999999999999999999999995 89999999999999999999999999 899999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHH
Q 014331 131 GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRAL 203 (426)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~ 203 (426)
..+|||+|| +..+++++|+++|..||.|..|.|. +|||||+|.+.++|.+|+
T Consensus 96 --------------------~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 154 (261)
T 3sde_A 96 --------------------GAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKAL 154 (261)
T ss_dssp --------------------SSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHH
T ss_pred --------------------CCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHH
Confidence 458999999 7889999999999999999999984 689999999999999999
Q ss_pred HHcCC-CCCC---CceEEEEEeecCC
Q 014331 204 DATNM-SKLT---DRVISVEYAVRDD 225 (426)
Q Consensus 204 ~~l~g-~~~~---g~~l~v~~a~~~~ 225 (426)
..||+ ..+. |+.|.|.++....
T Consensus 155 ~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 155 ERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHhcCCeEEecCCCceEEEeeccccC
Confidence 99954 4444 9999999998653
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.1e-27 Score=225.79 Aligned_cols=147 Identities=20% Similarity=0.338 Sum_probs=136.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||.++|+++|+++|+.|| |..|.+ .+|||||+|.+.++|++|++.|||..| .|+.|.|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~~~--- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQLQP--- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEEecC---
Confidence 4578999999999999999999999999 999998 489999999999999999999999999 89999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHH
Q 014331 131 GIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRA 202 (426)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A 202 (426)
...+|||+|| |..+++++|+++|..||.|..+.+. +|||||+|.+.++|.+|
T Consensus 94 -------------------~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 153 (284)
T 3smz_A 94 -------------------TDALLCVANL-PPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 153 (284)
T ss_dssp -------------------CSCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred -------------------CCCEEEEcCC-CCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHH
Confidence 2469999999 7899999999999999999999884 56999999999999999
Q ss_pred HHHcCCCCCCCceEEEEEeecCC
Q 014331 203 LDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 203 ~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
+..|+|..++|+.|.|.++....
T Consensus 154 ~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 154 KSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHTTCEETTEECEEEECCGGG
T ss_pred HHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999997753
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=5.4e-27 Score=223.86 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=133.7
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
.....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVV--GQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEe--CCcEEEEE
Confidence 34568999999999999999999999999999999983 699999999999999999 6999999 79999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEEe-------cCEEEEEecCH
Q 014331 125 WTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR-------RNFAFVQYEVQ 196 (426)
Q Consensus 125 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i~-------~g~afV~f~~~ 196 (426)
++. ..+|||+|| |..+++++|.++|..|| .|..|.++ +|||||+|.+.
T Consensus 114 ~~~-----------------------~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~ 169 (292)
T 2ghp_A 114 HLT-----------------------ECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 169 (292)
T ss_dssp ECC-----------------------SCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSH
T ss_pred ECC-----------------------CCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCH
Confidence 862 578999999 78899999999999999 99999983 68999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 197 EDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 197 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
++|.+|+..|||..|.|+.|.|.++....
T Consensus 170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 170 EDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999999999999999999999987643
No 21
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=2.1e-21 Score=194.47 Aligned_cols=77 Identities=31% Similarity=0.503 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
..+.++|||+|| +..+++++|+++|.+||.|+.|.|+ +|||||+|.+.++|++||..|||..|+|+.|.|+
T Consensus 99 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 7899999999999999999999984 6899999999999999999999999999999999
Q ss_pred EeecCC
Q 014331 220 YAVRDD 225 (426)
Q Consensus 220 ~a~~~~ 225 (426)
|+....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998753
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=1.4e-21 Score=159.94 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=69.7
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...+|||+|||+.+|+++|+++|+.||.|.+|.|. +|||||+|.+.++|++||+.|||..| +|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECC
Confidence 35689999999999999999999999999999983 78999999999999999999999999 89999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHH
Q 014331 128 HERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 167 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~ 167 (426)
........ .........+|||+|| +..+|++
T Consensus 82 ~~~~~~~~--------~~~~~~~~~~lyv~Nl-~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAE--------LGARAKEFTNVYIKNF-GPGSTRA 112 (115)
T ss_dssp CCCC------------------------------------
T ss_pred Cccccccc--------cccccCCCCceEeCCC-CCCcccc
Confidence 65422111 1122334567999999 5566554
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=1.9e-21 Score=166.97 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=110.5
Q ss_pred CCEEEEEEcChHhHHHHHHhc-CCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHH
Q 014331 89 SGFAFIYMDDERDAEDAIRGL-DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 167 (426)
Q Consensus 89 ~g~aFV~F~~~~~A~~Al~~l-ng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~ 167 (426)
+|+++|+|.+.++|++|++.| ||..| +| .|.|.++.......................+..+|||+|| |..++++
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~--~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl-~~~~t~~ 88 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGV--DG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNL-GNNGNKT 88 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTC--CC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESC-CSCCSCH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCC--CC-ceecccccCccccccccccccccccccCCCCCCEEEEeCC-CCCCCHH
Confidence 799999999999999999999 99999 79 9999987653321111111111223344567789999999 7889999
Q ss_pred HHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 168 DLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 168 ~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
+|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.++..+
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999996 789999999999999999999999999999999999874
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=7.7e-20 Score=158.20 Aligned_cols=132 Identities=24% Similarity=0.279 Sum_probs=99.8
Q ss_pred eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHH
Q 014331 88 KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTR 167 (426)
Q Consensus 88 ~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~ 167 (426)
.+|||||+|.+.++|++|++.+++... .+..+.+............ ..............+|||+|| |..++++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~v~nl-~~~~~~~ 85 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNG--VDGEWTYDDATKTFTVTEG---SHHHHHHMDVEGMTSLKVDNL-TYRTSPD 85 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHT--CCCEEEEETTTTEEEEECC---CCCSSCCCCCCBCCEEEEESC-CTTCCHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCC--CCCcccccCcccccccccc---ccccccccCCCCCCEEEEeCC-CCCCCHH
Confidence 479999999999999999998886433 1223332211110000000 000112233456789999999 7889999
Q ss_pred HHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 168 DLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 168 ~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
+|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|.|+.|.|.++....
T Consensus 86 ~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 86 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999994 5799999999999999999999999999999999998753
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=142.50 Aligned_cols=73 Identities=21% Similarity=0.429 Sum_probs=68.5
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
+.++|||+|||+++|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~~ 95 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVSY 95 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 35789999999999999999999999999999983 68999999999999999999999999 899999999
Q ss_pred eec
Q 014331 126 TKH 128 (426)
Q Consensus 126 a~~ 128 (426)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 964
No 26
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=8.4e-18 Score=168.38 Aligned_cols=76 Identities=32% Similarity=0.611 Sum_probs=70.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.||+++|.++|++||+|+.|.|. +|||||+|.+.++|++||+.|||+.| .|+.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 346899999999999999999999999999999983 79999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 997644
No 27
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=141.60 Aligned_cols=97 Identities=35% Similarity=0.551 Sum_probs=81.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGI 132 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~ 132 (426)
++|||+|||..+|+++|+++|++||+|..|.| ++|||||+|.+.++|++||+.|||..| .|+.|.|.|+......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999 478999999999999999999999999 8999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEEecCC
Q 014331 133 RRPGGGSSARRPSTNTRPSKTLFVINFD 160 (426)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 160 (426)
..... .........+|||+||+
T Consensus 79 ~~~~~------~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDR------PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCS------CCCSCCCCSCCCSCCCC
T ss_pred ccCCC------CCccccCCCceecCCCC
Confidence 21111 11223446789999993
No 28
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=5.5e-19 Score=134.47 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...-|||+||++.+||++|+++|.+||+|.+|.| ++|||||+|.+.++|++|++.|||..| .|++|.|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEECC
Confidence 4567999999999999999999999999999998 599999999999999999999999999 79999999873
No 29
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=138.29 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=70.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.+.++|||+|||..+|+++|.++|++||.|.+|.|. +|||||+|.+.++|.+||+.|||..+.+.|+.|.|+|++.+.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 467899999999999999999999999999999984 899999999999999999999998632379999999997653
No 30
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=133.98 Aligned_cols=76 Identities=33% Similarity=0.606 Sum_probs=72.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||..+|+++|+++|++||+|..|.|.++||||+|.+.++|++||+.|||..| +|+.|.|+|+....
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEEEECCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999 89999999997765
No 31
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=133.67 Aligned_cols=76 Identities=34% Similarity=0.562 Sum_probs=72.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||..+|+++|+++|+.||.|..|.|.++||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEV--KGKRINVELSTKGQ 82 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEECCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999 89999999997764
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=139.01 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCC--ceecCCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng--~~~~~~g~~i~V~~a~~ 128 (426)
...++|||+|||+.+|+++|+++|++||+|.+|.|. +|||||+|.+.++|++||+.|++ ..| .|+.|.|.|++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceE--CCEEEEEEEcCC
Confidence 457899999999999999999999999999999995 79999999999999999998864 678 899999999977
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 92 ~~ 93 (105)
T 1sjq_A 92 KE 93 (105)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 33
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=133.44 Aligned_cols=77 Identities=32% Similarity=0.566 Sum_probs=73.0
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
....++|||+|||..+|+++|+++|+.||.|..|.|.++||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF--QGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEE--TTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEEccCCC
Confidence 355789999999999999999999999999999999999999999999999999999999999 89999999997765
No 34
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=5.3e-18 Score=135.74 Aligned_cols=77 Identities=23% Similarity=0.494 Sum_probs=72.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 131 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~ 131 (426)
...++|||+|||..+|+++|+++|++||+|..|.|.++||||+|.+.++|++||+.|||..| .|+.|.|.|+.....
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDL--EGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEEEEcCCCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999 899999999987654
No 35
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=4.4e-19 Score=144.97 Aligned_cols=99 Identities=21% Similarity=0.398 Sum_probs=87.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...++|||+|||..+|+++|.++|+.||.|..|.|. +|||||+|.+.++|.+||+.|||..| .|+.|.|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEec
Confidence 457899999999999999999999999999999993 78999999999999999999999999 89999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCc
Q 014331 128 HERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGK 178 (426)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~ 178 (426)
..... .++ ....++++|.++|++||.
T Consensus 84 ~~~~~------------------------~~~-~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF------------------------QKM-DTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT------------------------TTS-CHHHHHHHHHHHHHHHCC
T ss_pred CChhh------------------------hhh-hHhHhHHHHHHHHHHhCC
Confidence 75411 345 455668999999999984
No 36
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=4.2e-18 Score=134.79 Aligned_cols=76 Identities=28% Similarity=0.523 Sum_probs=71.9
Q ss_pred cCCCccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 52 VAMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 52 ~~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
....++|||+|||. .+|+++|+++|+.||.|..|.|++|||||+|.+.++|++||+.|||..| .|+.|.|+|+...
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEE--TTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEecCCC
Confidence 45688999999998 9999999999999999999999999999999999999999999999999 7999999998654
No 37
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=138.20 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCCccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCc--eecCCCcEEEEEEee
Q 014331 53 AMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRT--EFGRKGRRLRVEWTK 127 (426)
Q Consensus 53 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~--~~~~~g~~i~V~~a~ 127 (426)
.+.++|||+|||+ .+|+++|+++|++||+|.+|.|. +|||||+|.+.++|++||+.||+. .| .|+.|.|+|+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~V~~a~ 90 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALV--FGKPVRVHLSQ 90 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEE--TTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceE--CCcEEEEEECC
Confidence 4578999999999 99999999999999999999995 699999999999999999999875 47 89999999998
Q ss_pred ccC
Q 014331 128 HER 130 (426)
Q Consensus 128 ~~~ 130 (426)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 655
No 38
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=138.15 Aligned_cols=75 Identities=19% Similarity=0.415 Sum_probs=69.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
.+.++|||+||++.+|+++|+++|++||+|.+|.| ++|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 45689999999999999999999999999999998 378999999999999999999999999 89999999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 98654
No 39
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=136.47 Aligned_cols=75 Identities=20% Similarity=0.385 Sum_probs=67.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCce----ecCC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGK--VDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTE----FGRK 117 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~--V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~----~~~~ 117 (426)
...+.||||+|||+.+|+++|+++|++||. |.+|.| ++|||||+|.+.++|++||+.|||.. | +
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i--~ 83 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI--D 83 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE--T
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE--C
Confidence 456889999999999999999999999995 568887 37999999999999999999999974 5 8
Q ss_pred CcEEEEEEeec
Q 014331 118 GRRLRVEWTKH 128 (426)
Q Consensus 118 g~~i~V~~a~~ 128 (426)
|+.|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999864
No 40
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3e-18 Score=135.34 Aligned_cols=76 Identities=26% Similarity=0.495 Sum_probs=71.9
Q ss_pred CCCccEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEY-DARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~-~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||. .+|+++|+++|+.||+|..|.|++|||||+|.+.++|++||+.|||..| .|+.|.|+|+....
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMN--FGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSC--BTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEEEcCcCC
Confidence 4578999999998 9999999999999999999999999999999999999999999999999 79999999998765
No 41
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=8e-18 Score=147.04 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=98.5
Q ss_pred eeeEEEEecCCchhHHhhhcCCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK- 88 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~- 88 (426)
...++||.|...+++++++.+++..+.|..+...... ........++|||+|||..+|+++|+++|+.||+|..|.|.
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~-~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~ 128 (172)
T 2g4b_A 50 DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH-DYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVK 128 (172)
T ss_dssp TTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCS-SCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCc-ccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEe
Confidence 4568999999999999999888888888776654422 11122346899999999999999999999999999999982
Q ss_pred -------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 89 -------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 89 -------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
+|||||+|.+.++|.+|++.|||..| .|+.|.|.||.
T Consensus 129 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~As 172 (172)
T 2g4b_A 129 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQRAS 172 (172)
T ss_dssp CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE--CCeEEEEEeCC
Confidence 68999999999999999999999999 79999999973
No 42
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=132.40 Aligned_cols=76 Identities=21% Similarity=0.425 Sum_probs=72.2
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRY--GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~--G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||..+|+++|+++|+.| |.|..|.+.+|||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL--DGSPIEVTLAKPVD 90 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEE--TTEEEEEECCCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEe--CCcEEEEEECCCCC
Confidence 457899999999999999999999999 99999999999999999999999999999999999 89999999997755
No 43
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=7e-18 Score=153.27 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=96.6
Q ss_pred eeeEEEEecCCchhHHhhhc-CCcceecCeecccccch-hhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 014331 10 CHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLS-IAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 87 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i 87 (426)
+..++||.|...+++++++. +++..+.+..+...... ..........+|||+|||+.+|+++|+++|+.||.|..|.|
T Consensus 56 ~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i 135 (213)
T 4f02_A 56 SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 135 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEe
Confidence 44689999999999999885 45555555555433211 11122334678999999999999999999999999999998
Q ss_pred ------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 88 ------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 88 ------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
++|||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 136 ~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~--~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 136 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGRFKSRK 182 (213)
T ss_dssp EEETTEEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECCCHH
T ss_pred eccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEEEEcCCCc
Confidence 379999999999999999999999999 89999999997643
No 44
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.6e-18 Score=135.46 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeC-CEEEEEEcChHhHHHHHHhcCCceecCCC-----cEEEEEEe
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-GFAFIYMDDERDAEDAIRGLDRTEFGRKG-----RRLRVEWT 126 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-g~aFV~F~~~~~A~~Al~~lng~~~~~~g-----~~i~V~~a 126 (426)
...++|||+|||+++|+++|+++|.+||+|+.|.|.. |||||+|.+.++|++||+.|||..| .| +.|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEE--ECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCc--cCCcCcceEEEEEeC
Confidence 4578999999999999999999999999999999976 9999999999999999999999999 78 99999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 91 ~~~~ 94 (108)
T 1x4c_A 91 GPRS 94 (108)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 45
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=135.34 Aligned_cols=77 Identities=40% Similarity=0.707 Sum_probs=71.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
....++|||+|||..+|+++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..| +|+.|.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEc
Confidence 3457899999999999999999999999999999993 78999999999999999999999999 8999999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8765
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=134.40 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=66.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE--------eCCEEEEEEcChHhHHHHHHhcC-CceecCCCcEEEEE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLD-RTEFGRKGRRLRVE 124 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~ln-g~~~~~~g~~i~V~ 124 (426)
+++|||+|||+++|+++|+++|+.|| +|.+|.| ++|||||+|.+.++|++||+.|+ +..| .|+.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 36899999999999999999999999 8999988 37999999999999999998875 5678 79999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+.++.
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 997654
No 47
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=8.6e-18 Score=136.17 Aligned_cols=76 Identities=26% Similarity=0.579 Sum_probs=71.7
Q ss_pred CCCccEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||.. +|+++|+++|++||+|..|.|.+|||||+|.+.++|++||+.|||..| +|+.|.|+|+....
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVL--AGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECCCCC
Confidence 34689999999999 999999999999999999999999999999999999999999999999 89999999997544
No 48
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=4.7e-18 Score=145.68 Aligned_cols=116 Identities=27% Similarity=0.376 Sum_probs=90.6
Q ss_pred eeEEEEecCCchhHHhhhcCC--cceecCeecccccch---------------hhhhccCCCccEEEcCCCCCCCHHHHH
Q 014331 11 HYLLIVYSHSVWPVQKKYLPR--RLYVLGFRRSHSQLS---------------IAAFEVAMMRPIFCGNFEYDARQSDLE 73 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~V~nLp~~~te~~L~ 73 (426)
....++.|...+++++++... +..+.| .+...... .........++|||+|||+.+|+++|+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~ 91 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELE 91 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 345677788888888887432 333333 22221110 112223457899999999999999999
Q ss_pred HHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 74 RLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 74 ~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+...
T Consensus 92 ~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 92 RAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL--CGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCS--SSSCCEEEECCCC
T ss_pred HHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEcCCC
Confidence 999999999999994 89999999999999999999999999 8999999999764
No 49
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=1.6e-17 Score=143.54 Aligned_cols=119 Identities=28% Similarity=0.402 Sum_probs=91.2
Q ss_pred eeeEEEEecCCchhHHhhhcCCcc--eecCee------ccc-----ccchhhhhccCCCccEEEcCCCCCCCHHHHHHHH
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRL--YVLGFR------RSH-----SQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLF 76 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~------~~~-----~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F 76 (426)
+..+.||.|...+++++++..... .+.+.. ... .............++|||+|||+.+|+++|+++|
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 557889999999999888743221 111100 000 0000111223447899999999999999999999
Q ss_pred hhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 77 RRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 77 ~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 92 ~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 92 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRVQMARYGR 151 (158)
T ss_dssp HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEEEEECCSS
T ss_pred HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCC
Confidence 999999999983 68999999999999999999999999 79999999998754
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=1.1e-17 Score=128.80 Aligned_cols=73 Identities=26% Similarity=0.535 Sum_probs=69.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|+.||+|..|.| .+|||||+|.+.++|++|++.|||..| .|+.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 45789999999999999999999999999999998 489999999999999999999999999 89999999
Q ss_pred Eee
Q 014331 125 WTK 127 (426)
Q Consensus 125 ~a~ 127 (426)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=132.39 Aligned_cols=77 Identities=21% Similarity=0.468 Sum_probs=71.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeEEEEE
Confidence 3557899999999999999999999999999999994 58999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98765
No 52
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=6.8e-18 Score=136.31 Aligned_cols=78 Identities=24% Similarity=0.478 Sum_probs=72.9
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.....++|||+|||..+|+++|+++|++||.|..|.|.+|||||+|.+.++|++|++.|||..| .|+.|.|.|+....
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLEVVYSKLPA 104 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEESCSCCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEEecCCC
Confidence 3456789999999999999999999999999999999999999999999999999999999999 89999999997654
No 53
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=134.19 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
.+.++|||+|||+.+|+++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..+.+.|+.|.|+|+..+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 457899999999999999999999999999999985 799999999999999999989775422289999999998755
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=129.48 Aligned_cols=74 Identities=19% Similarity=0.473 Sum_probs=69.6
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i---------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
..++|||+|||..+|+++|+++|+.||.|..|.| .+|||||+|.+.++|++|++.|||..| .|+.|.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 3579999999999999999999999999999998 589999999999999999999999999 89999999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99654
No 55
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=132.59 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcC--CceecCCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLD--RTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~ln--g~~~~~~g~~i~V~~a~~ 128 (426)
.+.++|||+|||+.+|+++|+++|++||.|.+|.|. +|||||+|.+.++|++||+.|+ +..| .|+.|.|.|+..
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~--~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHL--RNQPIYIQYSNH 90 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEE--TTEECEEEECSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceE--CCcEEEEEEcCc
Confidence 457899999999999999999999999999999985 7999999999999999999875 5678 899999999987
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 91 ~~ 92 (101)
T 2cq1_A 91 KE 92 (101)
T ss_dssp SS
T ss_pred cc
Confidence 55
No 56
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=144.64 Aligned_cols=116 Identities=14% Similarity=0.221 Sum_probs=97.8
Q ss_pred eeeEEEEecCCchhHHhhh-cCCcceecCeecccccch-hhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 014331 10 CHYLLIVYSHSVWPVQKKY-LPRRLYVLGFRRSHSQLS-IAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM 87 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i 87 (426)
+..++||.|.+.+++++++ .+++..+.+..+...... ..........+|||+|||..+|+++|+++|+.||.|..|.|
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 119 (166)
T 3md3_A 40 NVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV 119 (166)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE
Confidence 3468999999999999999 677777777666544321 11123445789999999999999999999999999999998
Q ss_pred e--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 88 K--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 88 ~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
. +|||||+|.+.++|.+|++.|||..| .|+.|.|.|++
T Consensus 120 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~a~ 165 (166)
T 3md3_A 120 MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWAA 165 (166)
T ss_dssp EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEESC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc--CCcEEEEEecC
Confidence 3 67999999999999999999999999 79999999985
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=131.20 Aligned_cols=77 Identities=29% Similarity=0.465 Sum_probs=71.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 83 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHVL 83 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 457899999999999999999999999999999993 68999999999999999999999999 89999999
Q ss_pred EeeccCC
Q 014331 125 WTKHERG 131 (426)
Q Consensus 125 ~a~~~~~ 131 (426)
|+.....
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987653
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=132.05 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCCccEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
...++|||+|||..+|+++|+ ++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI--GSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 346799999999999999999 999999999999996 89999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=131.93 Aligned_cols=77 Identities=25% Similarity=0.494 Sum_probs=72.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 3557899999999999999999999999999999995 78999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 98765
No 60
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=8.2e-18 Score=146.56 Aligned_cols=132 Identities=19% Similarity=0.308 Sum_probs=72.2
Q ss_pred EEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCC-CCC---CCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHH
Q 014331 94 IYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIR-RPG---GGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 169 (426)
Q Consensus 94 V~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~-~~~---~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L 169 (426)
.+|.+.++|+.|+..|++......|+.+.+.++....... ... .............+.++|||+|| |..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nL-p~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSI-HEEAQEDEI 89 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESC-CTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCC-CCCCCHHHH
Confidence 7899999999999999998774457777777643322100 000 00001222334566789999999 789999999
Q ss_pred HHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 170 ERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 170 ~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
+++|.+||.|..|.|+ +|||||+|.+.++|++||..|||..|.|+.|.|.|+..+..
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999995 57999999999999999999999999999999999988643
No 61
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=136.92 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=69.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCC--ceecCCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng--~~~~~~g~~i~V~~a~~ 128 (426)
.+.++|||+|||+.+|+++|+++|++||+|++|.|. +|||||+|.+.++|++||+.|++ ..| .|+.|.|.|++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPIYIQFSNH 106 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceE--CCeEEEEEEccC
Confidence 457899999999999999999999999999999995 79999999999999999999985 567 899999999977
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 107 k~ 108 (119)
T 2ad9_A 107 KE 108 (119)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.31 Aligned_cols=75 Identities=20% Similarity=0.505 Sum_probs=67.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 346799999999999999999999999999999983 68999999999999999999999999 89999999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
|+..+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99753
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=3.1e-17 Score=133.91 Aligned_cols=79 Identities=20% Similarity=0.487 Sum_probs=72.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|..||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 89 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRT 89 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3567899999999999999999999999999999983 58999999999999999999999999 8999999
Q ss_pred EEeeccCCC
Q 014331 124 EWTKHERGI 132 (426)
Q Consensus 124 ~~a~~~~~~ 132 (426)
.|+......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876643
No 64
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=1.7e-17 Score=148.42 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=100.2
Q ss_pred eeeEEEEecCCchhHHhhhcCCcceecCeecccccchhh-------------------hhccCCCccEEEcCCCCCCCHH
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIA-------------------AFEVAMMRPIFCGNFEYDARQS 70 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~V~nLp~~~te~ 70 (426)
+..++||.|.+.+++++++.+++..+.+..+........ .......++|||+|||..+|++
T Consensus 50 ~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 129 (198)
T 2yh0_A 50 DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDD 129 (198)
T ss_dssp TTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHH
Confidence 346899999999999999988888888876654432100 0112456899999999999999
Q ss_pred HHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 71 DLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 71 ~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
+|+++|+.||.|..|.|. +|||||+|.+.++|.+|++.|||..| .|+.|.|.|+....
T Consensus 130 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 130 QVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL--GDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE--TTEECEEEESCCCC
T ss_pred HHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEECCCCC
Confidence 999999999999999983 68999999999999999999999999 89999999997654
No 65
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1e-17 Score=135.54 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEe----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYG-KVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i~----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...++|||+|||+++|+++|+++|++|| +|..|.|. +|||||+|.+.++|++||+.|||..| +|+.|.|+++.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF--RGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEEECC
Confidence 4467999999999999999999999999 99999993 89999999999999999999999999 89999999986
Q ss_pred cc
Q 014331 128 HE 129 (426)
Q Consensus 128 ~~ 129 (426)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=133.31 Aligned_cols=77 Identities=34% Similarity=0.571 Sum_probs=71.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEEEE
Confidence 4567899999999999999999999999999999983 57999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997765
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=1.6e-17 Score=127.32 Aligned_cols=72 Identities=19% Similarity=0.515 Sum_probs=68.2
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
.+|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++|++.|||..| .|+.|.|.|+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEecC
Confidence 589999999999999999999999999999983 78999999999999999999999999 89999999997
Q ss_pred cc
Q 014331 128 HE 129 (426)
Q Consensus 128 ~~ 129 (426)
..
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 68
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-18 Score=136.78 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=69.7
Q ss_pred cCCCccEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCC--ceecCCCcEEEEEEe
Q 014331 52 VAMMRPIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDR--TEFGRKGRRLRVEWT 126 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng--~~~~~~g~~i~V~~a 126 (426)
..+.++|||+|||++ +|+++|+++|++||+|.+|.|. +|||||+|.+.++|++||+.||+ ..| .|+.|.|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l--~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF--QGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS--SSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE--CCEEEEEEEC
Confidence 345789999999998 9999999999999999999995 79999999999999999998875 446 8999999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 100 ~~~~ 103 (112)
T 1x4f_A 100 EKYK 103 (112)
T ss_dssp CSCS
T ss_pred cccc
Confidence 7665
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=132.79 Aligned_cols=77 Identities=14% Similarity=0.348 Sum_probs=72.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
....++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 3568899999999999999999999999999999985 78999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 98765
No 70
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=130.88 Aligned_cols=77 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec-CEEEEEecCHHHHHHHHHHcCCCCCCC-----ceEEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-NFAFVQYEVQEDATRALDATNMSKLTD-----RVISVEY 220 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~-g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~l~v~~ 220 (426)
......+|||+|| |..+++++|+++|.+||.|+.|.|.. +||||+|.+.++|++||+.|||..|.| +.|.|++
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 11 SRRSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCSCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 3456789999999 79999999999999999999999987 999999999999999999999999999 9999999
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
+..+
T Consensus 90 a~~~ 93 (108)
T 1x4c_A 90 DGPR 93 (108)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9874
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=129.49 Aligned_cols=76 Identities=24% Similarity=0.502 Sum_probs=70.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 356899999999999999999999999999999993 68999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 997765
No 72
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=128.16 Aligned_cols=74 Identities=23% Similarity=0.470 Sum_probs=69.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhc-CCceecCCCcEEEEEEee
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGL-DRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~l-ng~~~~~~g~~i~V~~a~ 127 (426)
....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.| ||..| .|+.|.|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEE--TTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEEEEEecC
Confidence 3557899999999999999999999999999999995 699999999999999999989 99999 89999999974
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=131.87 Aligned_cols=76 Identities=26% Similarity=0.607 Sum_probs=71.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 87 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIRVD 87 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 457899999999999999999999999999999993 68999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998765
No 74
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=131.21 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=70.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCC--CcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRK--GRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~--g~~i~V~~a~~ 128 (426)
...++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| . |+.|.|+|+..
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~~g~~l~V~~a~~ 92 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL--GGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBC--SSSSCBCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEe--CCCCcEEEEEECCC
Confidence 456899999999999999999999999999999996 67999999999999999999999999 7 99999999976
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 75
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=133.01 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=71.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 87 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELRV 87 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 3557899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998754
No 76
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=132.34 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=71.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 89 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIRV 89 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 3557899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9997765
No 77
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=129.75 Aligned_cols=73 Identities=26% Similarity=0.541 Sum_probs=68.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 91 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIKAS 91 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEEEE
Confidence 457899999999999999999999999999999993 68999999999999999999999999 89999999
Q ss_pred Eee
Q 014331 125 WTK 127 (426)
Q Consensus 125 ~a~ 127 (426)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=2.3e-17 Score=130.22 Aligned_cols=74 Identities=24% Similarity=0.467 Sum_probs=69.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEc
Confidence 5799999999999999999999999999999993 78999999999999999999999999 8999999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7765
No 79
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.6e-17 Score=145.77 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=99.1
Q ss_pred eeeEEEEecCCchhHHhhhcCCcceecCeecccccchh-hhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-
Q 014331 10 CHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSI-AAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM- 87 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i- 87 (426)
+..++||.|.+.+++++++.+++..+.+..+.+..... ........++|||+|||..+|+++|+++|+.||.|..|..
T Consensus 53 ~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~ 132 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQD 132 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSS
T ss_pred cccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCC
Confidence 33589999999999999999888888887776544221 1122335689999999999999999999999999988822
Q ss_pred --eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 88 --KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 88 --~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
.+|||||+|.+.++|.+||+.|||..| .|+.|.|.|+.++
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~a~~k 174 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVSLYYTGEK 174 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEE--TTEEEEEEECSSC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEecCCC
Confidence 479999999999999999999999999 7999999999754
No 80
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=2.2e-17 Score=134.85 Aligned_cols=76 Identities=20% Similarity=0.347 Sum_probs=70.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 100 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLKVQ 100 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEE
Confidence 456899999999999999999999999999999983 57999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 101 ~a~~~~ 106 (115)
T 2cpz_A 101 LKRSKN 106 (115)
T ss_dssp CCCCSC
T ss_pred EcCCCC
Confidence 998765
No 81
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=130.25 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=70.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRV-DMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v-~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
...++|||+|||..+|+++|+++|+.||.|..| .|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 357899999999999999999999999999998 773 68999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9997765
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=132.17 Aligned_cols=76 Identities=26% Similarity=0.521 Sum_probs=71.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.| .+|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~ 87 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRVN 87 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEE
Confidence 45789999999999999999999999999999998 378999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998765
No 83
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.7e-17 Score=135.55 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec-CEEEEEecCHHHHHHHHHHcCCCCCCCce-----EEEEEee
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR-NFAFVQYEVQEDATRALDATNMSKLTDRV-----ISVEYAV 222 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~-g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----l~v~~a~ 222 (426)
....+|||+|| +..+++++|+++|.+||+|+.|.|.. |||||+|.+.++|++||+.|||..|+|+. |.|..+.
T Consensus 14 r~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45689999999 79999999999999999999999987 99999999999999999999999999998 6666554
Q ss_pred c
Q 014331 223 R 223 (426)
Q Consensus 223 ~ 223 (426)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 84
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=130.47 Aligned_cols=76 Identities=17% Similarity=0.378 Sum_probs=70.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 457899999999999999999999999999999984 48999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 97654
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=129.83 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=69.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 89 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRV 89 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 3457899999999999999999999999999999983 57999999999999999999999999 8999999
Q ss_pred EEeec
Q 014331 124 EWTKH 128 (426)
Q Consensus 124 ~~a~~ 128 (426)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99863
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=133.29 Aligned_cols=77 Identities=23% Similarity=0.481 Sum_probs=71.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 3557899999999999999999999999999999994 49999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998765
No 87
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=131.49 Aligned_cols=78 Identities=17% Similarity=0.438 Sum_probs=73.0
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
.....++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~ 98 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKCYWGKE 98 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEECCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEEecCC
Confidence 44567899999999999999999999999999999996 79999999999999999999999999 899999999987
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 99 ~~ 100 (109)
T 1x4g_A 99 SP 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 88
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=129.46 Aligned_cols=76 Identities=24% Similarity=0.531 Sum_probs=70.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.| .+|||||+|.+.++|++||+ ||+..| .|+.|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~V 83 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVEV 83 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEEE
Confidence 355789999999999999999999999999999999 37899999999999999997 999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 84 ~~a~~~~ 90 (99)
T 2dgs_A 84 KRAEPRD 90 (99)
T ss_dssp EECCCCC
T ss_pred EECCCCc
Confidence 9998765
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=3.3e-17 Score=131.46 Aligned_cols=76 Identities=24% Similarity=0.464 Sum_probs=70.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCC---cEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKG---RRLR 122 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g---~~i~ 122 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .| +.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT--MPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC--CTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc--CCCCCccEE
Confidence 457899999999999999999999999999999994 68999999999999999999999998 67 9999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|.|+....
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998765
No 90
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=129.43 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=69.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEE-eCCEEEEEEcChHhHHHHHHhcCC-ceecCCCcEEEEEEeecc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDM-KSGFAFIYMDDERDAEDAIRGLDR-TEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i-~~g~aFV~F~~~~~A~~Al~~lng-~~~~~~g~~i~V~~a~~~ 129 (426)
...++|||+|||..+|+++|+++|++||. |..+.| ++|||||+|.+.++|++||+.||| ..| +|+.|.|+|+...
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEEEEEEccCc
Confidence 45789999999999999999999999999 666655 699999999999999999999999 999 8999999999775
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 84 ~ 84 (93)
T 2cqh_A 84 K 84 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=129.35 Aligned_cols=76 Identities=18% Similarity=0.439 Sum_probs=70.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 121 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i 121 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 356899999999999999999999999999999884 37999999999999999999999999 89999
Q ss_pred EEEEeeccC
Q 014331 122 RVEWTKHER 130 (426)
Q Consensus 122 ~V~~a~~~~ 130 (426)
.|.|+....
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 999997765
No 92
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=134.51 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=70.4
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
..++|||+|||+.+|+++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..| .|+.|.|+|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEEECCCCc
Confidence 3679999999999999999999999999999999 489999999999999999999999999 89999999997644
No 93
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=129.80 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=69.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEEEE
Confidence 3457899999999999999999999999999999994 68999999999999999999999999 89999999
Q ss_pred Eeec
Q 014331 125 WTKH 128 (426)
Q Consensus 125 ~a~~ 128 (426)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9853
No 94
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=131.28 Aligned_cols=76 Identities=32% Similarity=0.578 Sum_probs=71.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL--RGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEe--CCceEEEEEcCCCC
Confidence 457899999999999999999999999999999995 69999999999999999999999999 89999999997754
No 95
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=5.5e-17 Score=141.89 Aligned_cols=118 Identities=15% Similarity=0.205 Sum_probs=90.9
Q ss_pred eeeeEEEEecCCchhHHhhhc-CCcceecCeecccccc---hhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE
Q 014331 9 QCHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQL---SIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR 84 (426)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~ 84 (426)
.+..++||.|.+.+++++++. +++..+.+.......+ ..........++|||+|||..+|+++|+++|+.||.|..
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 124 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 124 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE
Confidence 456789999999999998885 4443333211111111 111222335789999999999999999999999999999
Q ss_pred EEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCC--CcEEEEEEee
Q 014331 85 VDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRK--GRRLRVEWTK 127 (426)
Q Consensus 85 v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~--g~~i~V~~a~ 127 (426)
|.|. +|||||+|.+.++|.+||+.|||..+. . ++.|.|.||.
T Consensus 125 v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~~~l~V~~ad 175 (175)
T 3nmr_A 125 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM-EGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCC-TTCSSCCEEEECC
T ss_pred EEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCccc-CCCCCCeEEEecC
Confidence 9983 789999999999999999999998773 3 4999999973
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=133.25 Aligned_cols=76 Identities=25% Similarity=0.508 Sum_probs=71.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..| +|+.|.|+|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 4567899999999999999999999999999999994 79999999999999999999999999 899999999
Q ss_pred eecc
Q 014331 126 TKHE 129 (426)
Q Consensus 126 a~~~ 129 (426)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 97
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.4e-17 Score=131.10 Aligned_cols=77 Identities=19% Similarity=0.432 Sum_probs=71.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcC------CceecCC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLD------RTEFGRK 117 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~ln------g~~~~~~ 117 (426)
....++|||+|||+.+|+++|+++|..||+|..|.|. +|||||+|.+.++|++||+.|| |..| .
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~--~ 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL--D 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--S
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--c
Confidence 3557899999999999999999999999999999983 7899999999999999999999 9999 8
Q ss_pred CcEEEEEEeeccC
Q 014331 118 GRRLRVEWTKHER 130 (426)
Q Consensus 118 g~~i~V~~a~~~~ 130 (426)
|+.|.|.|+....
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998765
No 98
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.6e-17 Score=132.36 Aligned_cols=74 Identities=30% Similarity=0.488 Sum_probs=69.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
...++|||+|||..+|+++|+++|+.||.|..|.| .+|||||+|.+.++|++||+.|||..| +|+.|.|.|++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEeccC
Confidence 44689999999999999999999999999999999 489999999999999999999999999 899999999864
No 99
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.3e-17 Score=132.66 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCccEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCC-
Q 014331 54 MMRPIFCGNFEY------DARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKG- 118 (426)
Q Consensus 54 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g- 118 (426)
..++|||+|||. .+++++|+++|++||.|..|.| ++|||||+|.+.++|++||+.|||..| .|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CCC
Confidence 467999999999 9999999999999999999998 379999999999999999999999999 78
Q ss_pred cEEEEEEeecc
Q 014331 119 RRLRVEWTKHE 129 (426)
Q Consensus 119 ~~i~V~~a~~~ 129 (426)
+.|.|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998754
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=131.62 Aligned_cols=76 Identities=18% Similarity=0.487 Sum_probs=70.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEE
Confidence 456899999999999999999999999999999984 68999999999999999999999999 79999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997754
No 101
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=5e-17 Score=147.35 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=98.5
Q ss_pred eeeEEEEecCCchhHHhhhc-CCcceecCeecccccch----------hhhhccCCCccEEEcCCCCCCCHHHHHHHHhh
Q 014331 10 CHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLS----------IAAFEVAMMRPIFCGNFEYDARQSDLERLFRR 78 (426)
Q Consensus 10 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~ 78 (426)
+..++||.|.+.+++++++. +++..+.+..+.+.... .........++|||+|||..+|+++|+++|+.
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc
Confidence 45689999999999999998 67777776655543211 01112345689999999999999999999999
Q ss_pred cCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 79 YGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 79 ~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
||.|..|.|. +|||||+|.+.++|.+||+.|||..| .|+.|.|.|+....
T Consensus 149 ~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL--GGQYLRVGKAVTPP 206 (216)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC--SSSBCEEEECSSCS
T ss_pred cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe--CCcEEEEEEecCCC
Confidence 9999999983 68999999999999999999999999 79999999998764
No 102
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=7.1e-17 Score=144.06 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=94.8
Q ss_pred eeEEEEecCCchhHHhhhcCCcceecCeecccccchh-----hhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEE
Q 014331 11 HYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSI-----AAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRV 85 (426)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v 85 (426)
..++||.|.+.+++++++..++..+.+..+....... ........++|||+|||..+|+++|+++|+.||.|..|
T Consensus 55 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v 134 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEE
T ss_pred cceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEE
Confidence 4589999999999999999888888877666543211 11122345899999999999999999999999999999
Q ss_pred EEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCC
Q 014331 86 DMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERG 131 (426)
Q Consensus 86 ~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~ 131 (426)
.|. +|||||+|.+.++|.+||+. +|..| .|+.|.|.|+..+..
T Consensus 135 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~--~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV--NGHNCEVRKALSKQE 185 (196)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE--TTEECEEEECC----
T ss_pred EEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE--CCEEEEEEecCChhH
Confidence 983 68999999999999999965 89999 899999999987653
No 103
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=5e-17 Score=131.61 Aligned_cols=76 Identities=18% Similarity=0.455 Sum_probs=71.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 101 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVD 101 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEE
Confidence 457899999999999999999999999999999993 69999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998754
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=4.6e-17 Score=131.07 Aligned_cols=74 Identities=18% Similarity=0.432 Sum_probs=69.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 3557899999999999999999999999999999984 78999999999999999999999999 89999999
Q ss_pred Eee
Q 014331 125 WTK 127 (426)
Q Consensus 125 ~a~ 127 (426)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=4.2e-17 Score=127.51 Aligned_cols=76 Identities=24% Similarity=0.356 Sum_probs=71.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
...++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEc
Confidence 457899999999999999999999999999999984 69999999999999999999999999 8999999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7754
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=129.84 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=70.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||..+|+++|+++|..||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEEEEE
Confidence 457899999999999999999999999999999983 68999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87544
No 107
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=131.72 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=68.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||+++|+++|.++|+.||+|.+|.|. +|||||+|.+.++|++||. +||..| .|+.|.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEEEEE
Confidence 346899999999999999999999999999999994 7999999999999999996 999999 899999999
Q ss_pred eecc
Q 014331 126 TKHE 129 (426)
Q Consensus 126 a~~~ 129 (426)
+...
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 8663
No 108
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=135.87 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=69.6
Q ss_pred CCCccEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.+.++|||+|||+.+++++|+ ++|++||+|.+|.|. +|||||+|.+.++|+.||+.|||..| .|+.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCEEEE
Confidence 457899999999999999876 799999999999983 79999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997654
No 109
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=5.1e-17 Score=131.16 Aligned_cols=76 Identities=21% Similarity=0.507 Sum_probs=70.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~V 100 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMKV 100 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 3557899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEeecc
Q 014331 124 EWTKHE 129 (426)
Q Consensus 124 ~~a~~~ 129 (426)
.++..+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999764
No 110
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=130.69 Aligned_cols=76 Identities=22% Similarity=0.462 Sum_probs=69.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.||+ .| .|+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l~V 90 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKANV 90 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEEEE
Confidence 3567899999999999999999999999999999993 68999999999999999999998 78 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
+|+....
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9997654
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=4.1e-17 Score=135.45 Aligned_cols=76 Identities=18% Similarity=0.487 Sum_probs=71.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 97 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISVD 97 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEE
Confidence 457899999999999999999999999999999983 78999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 98 ~a~~~~ 103 (126)
T 3ex7_B 98 WCFVRG 103 (126)
T ss_dssp ESEESS
T ss_pred EecCCC
Confidence 998765
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=6.3e-17 Score=127.81 Aligned_cols=77 Identities=19% Similarity=0.475 Sum_probs=71.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEe-----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLE----RLFRRYGKVDRVDMK-----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~V~~v~i~-----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
....++|||+|||..+|+++|+ ++|++||.|..|.|. +|||||+|.+.++|++|++.|||..| .|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3567899999999999999999 999999999999984 79999999999999999999999999 899999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|.|+....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997654
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=129.60 Aligned_cols=76 Identities=29% Similarity=0.471 Sum_probs=68.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
....++|||+|||..+|+++|+++|+.||.|. +.| .+|||||+|.+.++|++||+.|||..| .|+.|.|.|+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcC
Confidence 34578999999999999999999999999996 454 389999999999999999999999999 89999999997
Q ss_pred ccC
Q 014331 128 HER 130 (426)
Q Consensus 128 ~~~ 130 (426)
...
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 114
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=9.9e-18 Score=130.69 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=63.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYG--KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
.+|||+|||..+|+++|+++|+.|| .|.+|.| ++|||||+|.+.++|++||+.|||..| +|+.|.|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 4799999999999999999999999 9999988 368999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+.+..
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 97654
No 115
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=134.13 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCCccEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEe-----------CCEEEEEEcChHhHHHHHHhcCCceecCCC
Q 014331 53 AMMRPIFCGNFEYDARQSDLE---RLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKG 118 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~---~~F~~~G~V~~v~i~-----------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g 118 (426)
...++|||+|||+.+|+++|+ ++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~--~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV--DG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--TT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--CC
Confidence 456899999999999999999 999999999999984 27999999999999999999999999 89
Q ss_pred cEEEEEEeeccC
Q 014331 119 RRLRVEWTKHER 130 (426)
Q Consensus 119 ~~i~V~~a~~~~ 130 (426)
+.|.|.|+..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 116
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=129.71 Aligned_cols=76 Identities=17% Similarity=0.392 Sum_probs=70.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcE---
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVD-RVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR--- 120 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~-~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~--- 120 (426)
...++|||+|||..+|+++|+++|++||+|. .|.|. +|||||+|.+.++|++||+.|||..| .|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~ 84 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL--PGATPAK 84 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE--SSCSSCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc--CCCCcce
Confidence 4578999999999999999999999999999 99883 58999999999999999999999999 7999
Q ss_pred -EEEEEeeccC
Q 014331 121 -LRVEWTKHER 130 (426)
Q Consensus 121 -i~V~~a~~~~ 130 (426)
|.|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997643
No 117
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=7.9e-17 Score=140.01 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=94.5
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 88 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-- 88 (426)
.++||.|.+.+++++++. +++..+.+..+...... ........++|||+|||..+|+++|+++|+.||.|..|.|.
T Consensus 46 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 124 (168)
T 1b7f_A 46 GYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR-PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRD 124 (168)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC-CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEc
Confidence 489999999999999996 67777777666544322 11223457899999999999999999999999999999983
Q ss_pred ------CCEEEEEEcChHhHHHHHHhcCCceecCCC--cEEEEEEe
Q 014331 89 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKG--RRLRVEWT 126 (426)
Q Consensus 89 ------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g--~~i~V~~a 126 (426)
+|||||+|.+.++|.+|++.|||..| .| +.|.|.||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNVIP--EGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC--TTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCCEe--cCCCeEEEEEeC
Confidence 58999999999999999999999999 67 99999986
No 118
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=2.5e-16 Score=125.90 Aligned_cols=79 Identities=25% Similarity=0.470 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
...+.++|||+|| |..+++++|+++|.+||.|..|.|.++||||+|.+.++|++|++.||+..|.|+.|.|.++.....
T Consensus 7 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 7 GMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3456789999999 788999999999999999999999999999999999999999999999999999999999987644
No 119
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=5.4e-17 Score=128.79 Aligned_cols=74 Identities=22% Similarity=0.387 Sum_probs=68.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEe--------CCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
....++|||+|||..+|+++|+++|+.||.|.. |.|. +|||||+|.+.++|++||+.|||..|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~- 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe-
Confidence 355789999999999999999999999999998 8873 68999999999999999999999999
Q ss_pred CCCcEEEEEEee
Q 014331 116 RKGRRLRVEWTK 127 (426)
Q Consensus 116 ~~g~~i~V~~a~ 127 (426)
.|+.|.|++|+
T Consensus 89 -~g~~l~V~~A~ 99 (99)
T 2la6_A 89 -SGNPIKVSFAT 99 (99)
T ss_dssp -SSSBCEEEECC
T ss_pred -CCcEEEEEecC
Confidence 79999999974
No 120
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.6e-17 Score=139.62 Aligned_cols=116 Identities=27% Similarity=0.374 Sum_probs=73.0
Q ss_pred CEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHH
Q 014331 90 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDL 169 (426)
Q Consensus 90 g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L 169 (426)
.++|++|.+...|..|++.|+|... .|.. .+.+ ........+..+|||+|| |..+++++|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~--~g~~-~~~~----------------~~~~~~~~~~~~l~V~nL-p~~~te~~L 64 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQ--MGRG-SMSY----------------GRPPPDVEGMTSLKVDNL-TYRTSPDTL 64 (135)
T ss_dssp ---------------------------------CCS----------------CCSCSSGGGCCCEEEECC-CSSCHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCC--CCCC-CCCc----------------CCCCCCCCCCCEEEEeCC-CCCCCHHHH
Confidence 3678888888888999988888665 2322 1111 112233456789999999 788999999
Q ss_pred HHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 170 ERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 170 ~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.|.+++...
T Consensus 65 ~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 65 RRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999985 5699999999999999999999999999999999998753
No 121
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-17 Score=131.12 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=70.8
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEe--------CCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVD--------RVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--------~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
....++|||+|||..+|+++|+++|+.||.|. .|.|. +|||||+|.+.++|++||+.|||..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF- 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE-
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc-
Confidence 35678999999999999999999999999998 58772 68999999999999999999999999
Q ss_pred CCCcEEEEEEeeccC
Q 014331 116 RKGRRLRVEWTKHER 130 (426)
Q Consensus 116 ~~g~~i~V~~a~~~~ 130 (426)
.|+.|.|.|+....
T Consensus 91 -~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 -QGSKLKVSLARKKP 104 (113)
T ss_dssp -TTEECEEECSSCCC
T ss_pred -CCCEEEEEECCCCC
Confidence 89999999998765
No 122
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=5.1e-17 Score=133.29 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=68.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRLKV 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 3457899999999999999999999999999999993 68999999999999999999999999 8999999
Q ss_pred EEee
Q 014331 124 EWTK 127 (426)
Q Consensus 124 ~~a~ 127 (426)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9974
No 123
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.2e-16 Score=138.45 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=93.5
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-- 88 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-- 88 (426)
.++||.|.+.+++++++. +++..+.+..+...... .........+|||+|||..+|+++|+++|+.||.|..|.|.
T Consensus 45 g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 123 (167)
T 1fxl_A 45 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC-CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec
Confidence 689999999999999996 67777777666543322 11223456899999999999999999999999999999983
Q ss_pred ------CCEEEEEEcChHhHHHHHHhcCCceecCCCc--EEEEEEe
Q 014331 89 ------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR--RLRVEWT 126 (426)
Q Consensus 89 ------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~--~i~V~~a 126 (426)
+|||||+|.+.++|.+|++.|||..| .|+ .|.|.||
T Consensus 124 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~~~i~v~~A 167 (167)
T 1fxl_A 124 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP--SGATEPITVKFA 167 (167)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC--TTCSSCCEEEEC
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhcCCcc--CCCccceEEEeC
Confidence 68999999999999999999999999 675 4888885
No 124
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=3.4e-17 Score=136.50 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=71.4
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| +|+.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~V 120 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIRV 120 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 4567899999999999999999999999999999983 68999999999999999999999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
+|+..+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 125
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.4e-17 Score=128.61 Aligned_cols=75 Identities=21% Similarity=0.466 Sum_probs=69.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
....++|||+|||..+|+++|+++|+.|| |..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 87 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIR 87 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEE
Confidence 35578999999999999999999999999 9999983 689999999999999999 9999999 899999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|.++....
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998765
No 126
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=8.4e-17 Score=124.92 Aligned_cols=72 Identities=33% Similarity=0.661 Sum_probs=67.8
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
.++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++|+ .|||..| .|+.|.|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEEc
Confidence 5799999999999999999999999999999983 789999999999999999 9999999 8999999998
Q ss_pred ecc
Q 014331 127 KHE 129 (426)
Q Consensus 127 ~~~ 129 (426)
...
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 654
No 127
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=122.91 Aligned_cols=78 Identities=27% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
..+.++|||+|| |..+++++|+++|.+||.|..|.+.++||||+|.+.++|++|++.|||..|.|+.|.|+++..+..
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456789999999 789999999999999999999999999999999999999999999999999999999999987643
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=128.29 Aligned_cols=77 Identities=30% Similarity=0.588 Sum_probs=71.6
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcChHhHHHHHHhc-CCceecCCCcEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGL-DRTEFGRKGRRL 121 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~l-ng~~~~~~g~~i 121 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.| ||..| .|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCCEE
Confidence 4567899999999999999999999999999999983 689999999999999999999 99999 79999
Q ss_pred EEEEeeccC
Q 014331 122 RVEWTKHER 130 (426)
Q Consensus 122 ~V~~a~~~~ 130 (426)
.|.|+....
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998765
No 129
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-17 Score=131.77 Aligned_cols=75 Identities=33% Similarity=0.627 Sum_probs=70.0
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
..++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEEe
Confidence 46899999999999999999999999999999983 68999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 97654
No 130
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=129.63 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=71.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCce-ecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRR-YGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTE-FGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~-~~~~g~~i~V 123 (426)
...++|||+|||..+|+++|+++|+. ||.|..|.| ++|||||+|.+.++|++||+.|||.. | .|+.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc--CCEeEEE
Confidence 45789999999999999999999999 999999998 37899999999999999999999999 8 8999999
Q ss_pred EEeeccCC
Q 014331 124 EWTKHERG 131 (426)
Q Consensus 124 ~~a~~~~~ 131 (426)
.|+.....
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977653
No 131
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=127.84 Aligned_cols=75 Identities=20% Similarity=0.468 Sum_probs=69.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.|| |..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V 87 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLRV 87 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEEE
Confidence 35578999999999999999999999997 9999983 689999999999999999 9999999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998765
No 132
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=5.6e-17 Score=140.92 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=93.8
Q ss_pred eEEEEecCCchhHHhhhcCCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---
Q 014331 12 YLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--- 88 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--- 88 (426)
.++||.|.+.+++++++.. ...+.|..+...... ........++|||+|||..+|+++|+++|+.||.|..|.|.
T Consensus 46 g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~-~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 46 GFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI-PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp SCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC-CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred ceEEEEEccHHHHHHHHhc-ccccCCeEccccccc-chhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 4799999999999999985 456666666544321 11122346799999999999999999999999999999983
Q ss_pred -----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 89 -----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 89 -----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
+|||||+|.+.++|.+|++ |||..| .|+.|.|.|+.++
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~V~~a~pk 166 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF--KDRKIEIKRAEPR 166 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECS--SSSCEEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEe--CCeEEEEeecCCC
Confidence 5799999999999999996 899999 7999999999754
No 133
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=134.20 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=72.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 3557899999999999999999999999999999983 78999999999999999999999999 8999999
Q ss_pred EEeeccCC
Q 014331 124 EWTKHERG 131 (426)
Q Consensus 124 ~~a~~~~~ 131 (426)
.|+.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 134
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=8e-17 Score=129.31 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=69.4
Q ss_pred CCCccEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCc-
Q 014331 53 AMMRPIFCGNFEYDA------RQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR- 119 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~------te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~- 119 (426)
...++|||+|||..+ |+++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..| .|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--STTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--CCCc
Confidence 446899999999999 889999999999999999994 79999999999999999999999999 798
Q ss_pred EEEEEEeecc
Q 014331 120 RLRVEWTKHE 129 (426)
Q Consensus 120 ~i~V~~a~~~ 129 (426)
.|.|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 135
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.4e-16 Score=123.23 Aligned_cols=72 Identities=24% Similarity=0.506 Sum_probs=66.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||+.+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|| .+++..| +|+.|.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~--~g~~i~v 84 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL--DGRVIDP 84 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEE--CCEEEEE
Confidence 4567899999999999999999999999999999983 689999999999999999 5688888 8999999
Q ss_pred EEe
Q 014331 124 EWT 126 (426)
Q Consensus 124 ~~a 126 (426)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 136
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=2.7e-17 Score=138.24 Aligned_cols=78 Identities=37% Similarity=0.679 Sum_probs=71.7
Q ss_pred ccCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 51 EVAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 51 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
.....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 34557899999999999999999999999999999983 67999999999999999999999999 899999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|.|+....
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 137
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=6.1e-17 Score=132.24 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=64.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeC-CEEEEEEcChHhHHHHHHhcCCceecCCCcE-----EEEEEee
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKS-GFAFIYMDDERDAEDAIRGLDRTEFGRKGRR-----LRVEWTK 127 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~-g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~-----i~V~~a~ 127 (426)
..++|||+|||+++|+++|+++|++||+|+.|.|.. |||||+|.+.++|++||+.|||..| +|+. |.|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF--RSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBC--CCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEE--CCcEeeeEEEEeccCC
Confidence 468999999999999999999999999999999976 9999999999999999999999999 7988 5555543
Q ss_pred c
Q 014331 128 H 128 (426)
Q Consensus 128 ~ 128 (426)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 138
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-17 Score=131.30 Aligned_cols=74 Identities=28% Similarity=0.452 Sum_probs=69.3
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
..++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEEe
Confidence 46899999999999999999999999999999993 689999999999999999 9999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 97654
No 139
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.4e-16 Score=137.41 Aligned_cols=76 Identities=24% Similarity=0.527 Sum_probs=70.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|+.|.| .+|||||+|.+.++|++||+.|||..| +|+.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 45789999999999999999999999999999999 368999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997654
No 140
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=124.57 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=69.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
...++|||+|| .+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+....
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEECCCCC
Confidence 45689999996 89999999999999999999995 89999999999999999999999999 89999999997755
No 141
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=126.25 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=68.7
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
....+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|+|
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999 7899999999999999999999984 46999999999999999999999999999999999
Q ss_pred eec
Q 014331 221 AVR 223 (426)
Q Consensus 221 a~~ 223 (426)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 142
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.4e-16 Score=128.03 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=70.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCcee-cCCCcEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEF-GRKGRRLR 122 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~-~~~g~~i~ 122 (426)
....++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| ...|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3557899999999999999999999999999999993 68999999999999999999999765 11479999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|.|+....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998765
No 143
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.4e-16 Score=122.99 Aligned_cols=80 Identities=30% Similarity=0.405 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccC--CceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPY--GKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~--G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
.....+.++|||+|| |..+++++|+++|.+| |.|..|.++++||||+|.+.++|++|+..|||..|.|+.|.|.+++
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 9 EDTMSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSCSSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccccCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 344567889999999 7889999999999999 9999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 014331 223 RDD 225 (426)
Q Consensus 223 ~~~ 225 (426)
...
T Consensus 88 ~~~ 90 (99)
T 2cpd_A 88 PVD 90 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=137.95 Aligned_cols=74 Identities=16% Similarity=0.341 Sum_probs=68.1
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYG--KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
..++|||+|||+.+|+++|+++|+.|| .|..|.| ++|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeEE
Confidence 468999999999999999999999999 9999998 378999999999999999999999999 8999999
Q ss_pred EEeecc
Q 014331 124 EWTKHE 129 (426)
Q Consensus 124 ~~a~~~ 129 (426)
.++...
T Consensus 132 ~~a~~~ 137 (156)
T 3n9u_C 132 RPATRQ 137 (156)
T ss_dssp EECCHH
T ss_pred EEcCCC
Confidence 999654
No 145
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=1.2e-16 Score=136.92 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=69.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
....+|||+||++.+|+++|+++|++||+|+.|.|. +|||||+|.+.++|++|++.|||..|.-.++.|+|+|++.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 445679999999999999999999999999999993 5799999999999999999999999931139999999987
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 146
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.8e-16 Score=130.04 Aligned_cols=77 Identities=17% Similarity=0.396 Sum_probs=71.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||..+|+++|+++|+.||+|..|.| .+|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 109 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQ 109 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEEE
Confidence 355789999999999999999999999999999999 368999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997754
No 147
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=1.6e-16 Score=131.18 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=69.1
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCE-EEEEEcChHhHHHHHHhcCCceecCCC--cEEEEEEe
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGF-AFIYMDDERDAEDAIRGLDRTEFGRKG--RRLRVEWT 126 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---~g~-aFV~F~~~~~A~~Al~~lng~~~~~~g--~~i~V~~a 126 (426)
...-.|||+||++.+|+++|+++|++||+|..|.|. +|| |||+|.+.++|++|++.|||..| .| +.|+|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i--~g~~~~LrI~~a 103 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI--YNACCTLRIDFS 103 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEE--ETTEEEEEEEEC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCee--cCCCcEEEEEec
Confidence 345678899999999999999999999999999883 678 99999999999999999999999 57 89999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8765
No 148
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.7e-17 Score=128.33 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|..||.|..+.+ ++|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 90 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLV 90 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEEEE
Confidence 45689999999999999999999999999976544 379999999999999999999999999 89999999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98653
No 149
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=122.40 Aligned_cols=79 Identities=25% Similarity=0.426 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
...+.++|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|+..|||..|.|+.|.|+++..+..
T Consensus 6 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 6 SGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 3456789999999 788999999999999999999999999999999999999999999999999999999999987543
No 150
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=128.43 Aligned_cols=76 Identities=18% Similarity=0.392 Sum_probs=70.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+. |+..| +|+.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEE
Confidence 4567899999999999999999999999999999983 58999999999999999987 99999 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.++....
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9998765
No 151
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.7e-16 Score=148.81 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=67.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCC-CcEEEEEEee
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRK-GRRLRVEWTK 127 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~-g~~i~V~~a~ 127 (426)
..++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|.+||+.|||..| . |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKI--TQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEe--CCCCEEEEEEec
Confidence 35789999999999999999999999999999994 59999999999999999999999999 6 9999999985
No 152
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=4.6e-17 Score=128.09 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=66.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..| .|+.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 34689999999999999999999999999976655 368999999999999999999999999 89999999
Q ss_pred Eee
Q 014331 125 WTK 127 (426)
Q Consensus 125 ~a~ 127 (426)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 153
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=126.71 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=69.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe---------CCEEEEEEcChHhHHHHHHhcC--CceecCCCcE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGK-VDRVDMK---------SGFAFIYMDDERDAEDAIRGLD--RTEFGRKGRR 120 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~-V~~v~i~---------~g~aFV~F~~~~~A~~Al~~ln--g~~~~~~g~~ 120 (426)
...++|||+|||..+|+++|+++|..||. |..|.|. +|||||+|.+.++|++||+.|| +..| .|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCe
Confidence 34689999999999999999999999998 9999984 7899999999999999999996 5888 8999
Q ss_pred EEEEEeeccC
Q 014331 121 LRVEWTKHER 130 (426)
Q Consensus 121 i~V~~a~~~~ 130 (426)
|.|.|+....
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998765
No 154
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=121.86 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
..+..+|||+|| |..+++++|+++|++||.|..|.+.++||||+|.+.++|++|++.|||..|.|+.|.|.++....
T Consensus 6 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 456789999999 78899999999999999999999999999999999999999999999999999999999998753
No 155
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.3e-16 Score=124.46 Aligned_cols=78 Identities=24% Similarity=0.521 Sum_probs=72.2
Q ss_pred CCCCcEEEEecCCCC-CCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCCC
Q 014331 148 TRPSKTLFVINFDPY-HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDD 226 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~-~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 226 (426)
..+..+|||+|| |. .+++++|+++|.+||.|..|.|++|||||+|.+.++|++|++.|||..+.|+.|.|++++....
T Consensus 7 ~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 7 IPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp --CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 466889999999 77 8999999999999999999999999999999999999999999999999999999999987543
No 156
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=7.1e-17 Score=121.15 Aligned_cols=67 Identities=22% Similarity=0.475 Sum_probs=62.9
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
+|||+|||+.+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++ |||..| .|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 59999999999999999999999999999983 6899999999999999995 999999 8999999875
No 157
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=126.19 Aligned_cols=76 Identities=22% Similarity=0.426 Sum_probs=68.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
...++|||+|||..+|+++|+++|++||.|.-+.. .+|||||+|.+.++|++||+.|||..| .|+.|.|+|+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a~~ 90 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIRLELQGP 90 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEEEEEcCC
Confidence 45789999999999999999999999998843322 489999999999999999999999999 899999999977
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 91 ~~ 92 (101)
T 2fc9_A 91 RG 92 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=2.7e-16 Score=129.36 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=67.0
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCE-EEEEEcChHhHHHHHHhcCCceecCCC--cEEEEEEeecc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGF-AFIYMDDERDAEDAIRGLDRTEFGRKG--RRLRVEWTKHE 129 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~-aFV~F~~~~~A~~Al~~lng~~~~~~g--~~i~V~~a~~~ 129 (426)
...|||+||++.+|+++|+++|++||+|..|.|. .|| |||+|.+.++|++|++.|||..| .| +.|.|+|++..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i--~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADI--YAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCC--BTTBSEEEEECCSCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEe--cCCCeEEEEEEecCC
Confidence 4457899999999999999999999999999884 586 99999999999999999999999 56 69999999876
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=127.21 Aligned_cols=78 Identities=14% Similarity=0.259 Sum_probs=68.9
Q ss_pred CCCccEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCcee-cC--CCcEEEEEE
Q 014331 53 AMMRPIFC--GNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEF-GR--KGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V--~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~-~~--~g~~i~V~~ 125 (426)
.+.++||| |||+..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..| .. .|.+|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45788999 7799999999999999999999999995 78999999999999999999999977 11 478999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 86543
No 160
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=8.3e-17 Score=122.78 Aligned_cols=66 Identities=20% Similarity=0.369 Sum_probs=61.9
Q ss_pred ccEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCc-EEE
Q 014331 56 RPIFCGNFEYDA------RQSDLERLFRRYGKVDRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR-RLR 122 (426)
Q Consensus 56 ~~l~V~nLp~~~------te~~L~~~F~~~G~V~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~-~i~ 122 (426)
++|||+|||..+ |+++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--DKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC--SSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc--CCceeEE
Confidence 689999999999 789999999999999999984 79999999999999999999999999 788 877
Q ss_pred E
Q 014331 123 V 123 (426)
Q Consensus 123 V 123 (426)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 161
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=3.4e-16 Score=126.53 Aligned_cols=76 Identities=18% Similarity=0.374 Sum_probs=66.5
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.+ +..| .|+.|.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~V 98 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTIDP 98 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEEE
Confidence 4557899999999999999999999999999999993 689999999999999999776 5888 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.++....
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9997654
No 162
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=123.05 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCC--CCCceEEEEEee
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSK--LTDRVISVEYAV 222 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~l~v~~a~ 222 (426)
...++.+|||+|| |..+++++|.++|++||.|..|.+. +|||||+|++.++|.+|++.|++.. +.|+.|.|+|++
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4567899999999 7999999999999999999999996 7899999999999999999999876 789999999998
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
.+
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 163
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=2.3e-16 Score=144.87 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=94.9
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchhh----------------------------------hhccCCCc
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIA----------------------------------AFEVAMMR 56 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 56 (426)
.++||.|...+++++++. +++..+.+..+.+...... .......+
T Consensus 73 g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T 2adc_A 73 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 152 (229)
T ss_dssp CCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCC
Confidence 469999999999999996 6777666655544221100 00012368
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCC-CcEEEEEEeecc
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYG-KVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRK-GRRLRVEWTKHE 129 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~-g~~i~V~~a~~~ 129 (426)
+|||+|||..+|+++|+++|+.|| +|..|.| .+|||||+|.+.++|.+||+.|||..| . |+.|.|.|++..
T Consensus 153 ~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 153 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 228 (229)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBS--SSSCBCEEEECSSC
T ss_pred EEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCcc--CCCCeEEEEEecCC
Confidence 899999999999999999999999 9999999 589999999999999999999999999 6 999999998753
No 164
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=128.93 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=69.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEE----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKV----DRVDM----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V----~~v~i----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|..||.| ..+.+ .+|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 457899999999999999999999999999 56665 379999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 998765
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.6e-16 Score=123.22 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=68.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
..++|||+|||+.+|+++|+++|++| +|..|.| .+|||||+|.+.++|++|++.|||..| .|+.|.|+|+....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEEEcCCCc
Confidence 46799999999999999999999999 9999988 489999999999999999999999999 89999999986543
No 166
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=121.93 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
.....+..+|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 9 RITRYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCCSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred ccCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567889999999 7889999999999999999999996 679999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99988644
No 167
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=128.27 Aligned_cols=76 Identities=16% Similarity=0.428 Sum_probs=69.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|..||+|..|.|. +|||||+|.+.++|++||+. |+..| .|+.|.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEEE
Confidence 346899999999999999999999999999999983 68999999999999999966 99999 89999999
Q ss_pred EeeccCC
Q 014331 125 WTKHERG 131 (426)
Q Consensus 125 ~a~~~~~ 131 (426)
|+.....
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987653
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=121.47 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=65.7
Q ss_pred Ccc-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 55 MRP-IFCGNFEYDARQSD----LERLFRRY-GKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 55 ~~~-l~V~nLp~~~te~~----L~~~F~~~-G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
..| |||+|||+.+++++ |+++|++| |+|.+| ..|||||+|.+.++|++|++.|||..| .|++|+|.||+.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l--~gr~i~v~~A~~ 83 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDSAERAQKRMENEDV--FGNRIIVSFTPK 83 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCS--SSSCCEEESSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHHHHHHHHHhcCCcc--CCceEEEEecCC
Confidence 444 99999999999988 55899999 599998 359999999999999999999999999 799999999987
Q ss_pred cCC
Q 014331 129 ERG 131 (426)
Q Consensus 129 ~~~ 131 (426)
...
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 663
No 169
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=2.8e-16 Score=136.75 Aligned_cols=76 Identities=18% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|..||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 147 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQVD 147 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 346789999999999999999999999999999994 68999999999999999999999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 998765
No 170
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=5.2e-17 Score=126.48 Aligned_cols=73 Identities=38% Similarity=0.713 Sum_probs=65.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
+++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.+ |++|++.|||..| .|+.|.|+++
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a 77 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEA 77 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEc
Confidence 3689999999999999999999999999999993 789999999999 9999999999999 8999999999
Q ss_pred eccC
Q 014331 127 KHER 130 (426)
Q Consensus 127 ~~~~ 130 (426)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7754
No 171
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=120.69 Aligned_cols=68 Identities=18% Similarity=0.424 Sum_probs=63.9
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
++|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|+ ..| +|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 479999999999999999999999999999983 6899999999999999999999 888 8999999987
No 172
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.4e-16 Score=123.45 Aligned_cols=75 Identities=19% Similarity=0.388 Sum_probs=67.9
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|..||+|..|.|. +|||||+|.+.++|++||+ ++..| +|+.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEEE
Confidence 3557899999999999999999999999999999983 5799999999999999997 46778 8999999
Q ss_pred EEeeccC
Q 014331 124 EWTKHER 130 (426)
Q Consensus 124 ~~a~~~~ 130 (426)
.|+....
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998765
No 173
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-15 Score=119.82 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHc--CCCCCCCceEEEEEe
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDAT--NMSKLTDRVISVEYA 221 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~l~v~~a 221 (426)
....+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.| ++..|.|+.|.|.|+
T Consensus 10 ~~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 34567889999999 7899999999999999999999997 589999999999999999977 567899999999999
Q ss_pred ecCCC
Q 014331 222 VRDDD 226 (426)
Q Consensus 222 ~~~~~ 226 (426)
+.+..
T Consensus 89 ~~~~~ 93 (101)
T 2cq1_A 89 NHKEL 93 (101)
T ss_dssp SCSSC
T ss_pred CcccC
Confidence 87643
No 174
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=121.47 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=68.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||..+|+++|+++|+.| .|..|.|. +|||||+|.+.++|++||+ |||..| .|+.|.|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEEEEE
Confidence 457899999999999999999999999 99999883 6899999999999999998 999999 799999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97653
No 175
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=2.7e-16 Score=127.24 Aligned_cols=77 Identities=22% Similarity=0.404 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCC-CCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 148 TRPSKTLFVINFDPYH-TRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~-~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
.....+|||+|| +.. +++++|+++|.+||.|..|.|.++||||+|.+.++|++|++.|||..|+|+.|.|+++....
T Consensus 24 ~~~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 345689999999 777 89999999999999999999999999999999999999999999999999999999998643
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2e-16 Score=141.68 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=94.8
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchhh-----h-----------------------------hccCCCc
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIA-----A-----------------------------FEVAMMR 56 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~-----------------------------~~~~~~~ 56 (426)
.++||.|.+.+++++++. +++..+.+..+........ . ....+.+
T Consensus 42 g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 121 (198)
T 1qm9_A 42 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSA 121 (198)
T ss_dssp SCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCcc
Confidence 469999999999999996 6776666655544221100 0 0012368
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCC-CcEEEEEEeecc
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYG-KVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRK-GRRLRVEWTKHE 129 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G-~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~-g~~i~V~~a~~~ 129 (426)
+|||+|||..+|+++|+++|+.|| .|..|.| .+|||||+|.+.++|.+|++.|||..| . |+.|.|.|++..
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 197 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCC--SSCCSCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCcc--CCCCeEEEEeeccc
Confidence 899999999999999999999999 9999999 479999999999999999999999999 6 999999999753
No 177
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=124.60 Aligned_cols=76 Identities=21% Similarity=0.412 Sum_probs=69.2
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
...++|||+|||..+|+++|+++|+.||.|..|.. .+|||||+|.+.++|++||+.|||..| .|+.|.|.|+...
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEcCCC
Confidence 45789999999999999999999999999988733 489999999999999999999999999 8999999999765
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-17 Score=125.71 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=66.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|+|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 457899999999999999999999999999999983 68999999999999999999999999 79888877
Q ss_pred Ee
Q 014331 125 WT 126 (426)
Q Consensus 125 ~a 126 (426)
++
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 179
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-15 Score=119.97 Aligned_cols=81 Identities=33% Similarity=0.495 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
.....+..+|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|+..|||..|+|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 9 SESKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344566799999999 7889999999999999999999996 789999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99988643
No 180
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.4e-16 Score=122.11 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=69.8
Q ss_pred CCCCcEEEEecCCCC-CCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCC--CCCCceEEEEEee
Q 014331 148 TRPSKTLFVINFDPY-HTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMS--KLTDRVISVEYAV 222 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~-~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~ 222 (426)
..+..+|||+|| |+ .+++++|+++|++||.|..|.|. ++||||+|++.++|.+|++.||+. .|.|+.|.|++|.
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 346889999999 78 99999999999999999999996 489999999999999999999864 4899999999998
Q ss_pred cCC
Q 014331 223 RDD 225 (426)
Q Consensus 223 ~~~ 225 (426)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 643
No 181
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=4.1e-16 Score=129.00 Aligned_cols=75 Identities=27% Similarity=0.590 Sum_probs=69.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.|.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 110 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVL 110 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEE
Confidence 346899999999999999999999999999999983 789999999999999999 8999999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
|+....
T Consensus 111 ~a~~~~ 116 (124)
T 2jwn_A 111 PKRTNM 116 (124)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 997644
No 182
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=7.3e-16 Score=121.80 Aligned_cols=78 Identities=23% Similarity=0.492 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEecCCCC-CCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 146 TNTRPSKTLFVINFDPY-HTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~-~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
....+.++|||+|| +. .+++++|+++|.+||.|..|.+.+|||||+|.+.++|.+|++.|||..++|+.|.|++++..
T Consensus 17 ~~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 17 RGSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp --CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34567899999999 77 89999999999999999999999999999999999999999999999999999999999764
No 183
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.8e-16 Score=118.78 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=68.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
.+.-|||+|| +..+++++|+++|.+||+|..+.+ ++|||||+|.+.++|.+|++.||+..+.|+.|.|++|..
T Consensus 6 ~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 4678999999 788999999999999999999988 489999999999999999999999999999999999853
No 184
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=131.33 Aligned_cols=73 Identities=25% Similarity=0.521 Sum_probs=67.9
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
....++|||+|||..+|+++|+++|+.||+|..|.| .+|||||+|.+.++|++||+.|||..| .|+.|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 345789999999999999999999999999999998 278999999999999999999999999 7999999
Q ss_pred EEe
Q 014331 124 EWT 126 (426)
Q Consensus 124 ~~a 126 (426)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 185
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=8e-16 Score=127.60 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| +..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 17 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34556789999999 7889999999999999999999995 68999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|+++.....
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999987643
No 186
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=123.74 Aligned_cols=78 Identities=21% Similarity=0.421 Sum_probs=68.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
....++|||+|||..+|+++|+++|+.|+.|.-+.. .+|||||+|.+.++|++||+.|||..| .|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEe
Confidence 356789999999999999999999999865544433 268999999999999999999999999 8999999999
Q ss_pred eccCC
Q 014331 127 KHERG 131 (426)
Q Consensus 127 ~~~~~ 131 (426)
+....
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87653
No 187
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-15 Score=120.36 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCC--CCCCCceEEEEEe
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNM--SKLTDRVISVEYA 221 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~l~v~~a 221 (426)
....+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|++ ..|.|+.|.|+|+
T Consensus 10 ~~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 34567899999999 7899999999999999999999986 68999999999999999998865 4599999999999
Q ss_pred ecCCC
Q 014331 222 VRDDD 226 (426)
Q Consensus 222 ~~~~~ 226 (426)
..+..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87543
No 188
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=126.84 Aligned_cols=74 Identities=23% Similarity=0.474 Sum_probs=66.4
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
....++|||+|||..+|+++|+++|+.|| |..|.|. +|||||+|.+.++|++|| .|||..| .|+.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEEE
Confidence 45579999999999999999999999999 9999982 689999999999999999 9999999 899999
Q ss_pred EEEeecc
Q 014331 123 VEWTKHE 129 (426)
Q Consensus 123 V~~a~~~ 129 (426)
|+++...
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999764
No 189
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=128.68 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKV-DRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V-~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|+.||.| ..|.| .+|||||+|.+.++|++||+. |+..| .|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i~v~ 89 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREAFVH 89 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEEEEE
Confidence 457899999999999999999999999999 78888 489999999999999999965 99999 89999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 190
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=6.3e-16 Score=120.10 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=62.1
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeec
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKH 128 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~ 128 (426)
....++|||+|||+++|+++|+++|++||+|.+|.|. +|||||+|.+.++|++ |+|..+.+.|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 3567899999999999999999999999999999994 8999999999999983 56666544799999999976
Q ss_pred cC
Q 014331 129 ER 130 (426)
Q Consensus 129 ~~ 130 (426)
..
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-15 Score=121.91 Aligned_cols=81 Identities=26% Similarity=0.413 Sum_probs=73.4
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
.....+.++|||+|| +..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.||+..|.|+.|.|+
T Consensus 16 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344566789999999 7899999999999999999999995 5799999999999999999999999999999999
Q ss_pred EeecCCC
Q 014331 220 YAVRDDD 226 (426)
Q Consensus 220 ~a~~~~~ 226 (426)
+++....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987543
No 192
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=131.56 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=69.3
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEE--------eCCEEEEEEcChHhHHHHHHhcCCc----eecCC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--VDM--------KSGFAFIYMDDERDAEDAIRGLDRT----EFGRK 117 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--v~i--------~~g~aFV~F~~~~~A~~Al~~lng~----~~~~~ 117 (426)
....++|||+|||+.+|+++|+++|+.||.|.. |.| ++|||||+|.+. +|.+||+.|||. .| +
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~--~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI--D 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--G
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--C
Confidence 355789999999999999999999999999966 777 379999999999 999999999999 88 8
Q ss_pred CcEEEEEEeeccC
Q 014331 118 GRRLRVEWTKHER 130 (426)
Q Consensus 118 g~~i~V~~a~~~~ 130 (426)
|+.|.|+|+....
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998764
No 193
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=124.16 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
..+..+|||+|| +..+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.|+
T Consensus 3 ~~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999999 7899999999999999999999984 5799999999999999999999999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 99654
No 194
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=117.93 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.+.++|||+|| +..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999 7889999999999999999999995 46999999999999999999999999999999999
Q ss_pred eecCCC
Q 014331 221 AVRDDD 226 (426)
Q Consensus 221 a~~~~~ 226 (426)
+..+..
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987644
No 195
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=123.84 Aligned_cols=79 Identities=16% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcC--CCCCCCceEEEEEee
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATN--MSKLTDRVISVEYAV 222 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~ 222 (426)
...+..+|||+|| |+.+++++|+++|++||.|+.|.|. +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.|++
T Consensus 12 ~~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 3566889999999 7899999999999999999999997 6899999999999999999886 478999999999998
Q ss_pred cCCC
Q 014331 223 RDDD 226 (426)
Q Consensus 223 ~~~~ 226 (426)
.+..
T Consensus 91 ~~~~ 94 (105)
T 1sjq_A 91 HKEL 94 (105)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7543
No 196
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=122.18 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=68.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-Ee----CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVD-MK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~-i~----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...++|||+|||+.+|+++|+++|..||.|..|. |. .+.|||+|.+.++|++||+.|||..| .|+.|.|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL--ENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEcC
Confidence 3468999999999999999999999999999994 63 45699999999999999999999999 79999999997
Q ss_pred cc
Q 014331 128 HE 129 (426)
Q Consensus 128 ~~ 129 (426)
..
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 197
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=3.1e-16 Score=128.62 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=68.3
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGK---VDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
...++|||+|||+++|+++|+++|+.||. |..|.|. +|||||+|.+.++|++||+ |||..| .|+.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM--GHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeEEE
Confidence 45789999999999999999999999999 8888883 7899999999999999996 999999 799999
Q ss_pred EEEeeccC
Q 014331 123 VEWTKHER 130 (426)
Q Consensus 123 V~~a~~~~ 130 (426)
|.++....
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 198
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=124.32 Aligned_cols=75 Identities=13% Similarity=0.229 Sum_probs=67.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|..||.|.. |.| ++|||||+|.+.++|++||+. |+..| .|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEEEE
Confidence 45789999999999999999999999999987 777 379999999999999999966 99999 79999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986543
No 199
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=3.1e-15 Score=119.83 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCC---ceE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTD---RVI 216 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 216 (426)
...+..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3456899999999 7899999999999999999999996 5799999999999999999999999998 999
Q ss_pred EEEEeecCCC
Q 014331 217 SVEYAVRDDD 226 (426)
Q Consensus 217 ~v~~a~~~~~ 226 (426)
.|.++..+..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999988644
No 200
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.8e-16 Score=120.54 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=66.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CC-EEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SG-FAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g-~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
...++|||+|||..+|+++|+++|+.||+|..|.+. .+ ||||+|.+.++|++||+ |||..| .|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEE--TTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEEECCcC
Confidence 346799999999999999999999999999998543 12 99999999999999998 999999 8999999988654
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 201
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=125.60 Aligned_cols=78 Identities=14% Similarity=0.273 Sum_probs=69.0
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecC------CC
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGR------KG 118 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~------~g 118 (426)
....++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..|.. .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3457899999999999999999999999999999983 6899999999999999999999998821 26
Q ss_pred cEEEEEEeecc
Q 014331 119 RRLRVEWTKHE 129 (426)
Q Consensus 119 ~~i~V~~a~~~ 129 (426)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78999998743
No 202
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-15 Score=119.85 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.....+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 9 ISERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred cccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 344567899999999 7899999999999999999999994 4799999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 014331 217 SVEYAVRDDD 226 (426)
Q Consensus 217 ~v~~a~~~~~ 226 (426)
.|.++.....
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999987644
No 203
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-15 Score=119.35 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34566799999999 7899999999999999999999996 4899999999999999999999999999999999
Q ss_pred EeecCCC
Q 014331 220 YAVRDDD 226 (426)
Q Consensus 220 ~a~~~~~ 226 (426)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9988543
No 204
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=1.1e-15 Score=124.84 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=69.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
...+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|.++..
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3568999999 7899999999999999999999985 67999999999999999999999999999999999976
Q ss_pred CC
Q 014331 224 DD 225 (426)
Q Consensus 224 ~~ 225 (426)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 205
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=120.88 Aligned_cols=79 Identities=34% Similarity=0.449 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 8 ~~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34566799999999 7889999999999999999999995 57999999999999999999999999999999
Q ss_pred EEEeecCC
Q 014331 218 VEYAVRDD 225 (426)
Q Consensus 218 v~~a~~~~ 225 (426)
|.+++...
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998754
No 206
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-16 Score=126.62 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=66.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||..+|+++|+++|+.||.|..+.| ++|||||+|.+.++|++||+ |||..| .|+.|.|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEEEE
Confidence 45789999999999999999999999998766222 38999999999999999997 999999 799999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97654
No 207
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=9.8e-16 Score=118.28 Aligned_cols=70 Identities=21% Similarity=0.478 Sum_probs=65.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRY----G-------KVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 119 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~ 119 (426)
...++|||+|||+.+|+++|+++|++| | +|..|.|. +|||||+|.+.++|++|+ .|||..| .|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~--~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF--QGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEE--TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEE--CCe
Confidence 346899999999999999999999999 8 99999995 899999999999999999 9999999 899
Q ss_pred EEEEEE
Q 014331 120 RLRVEW 125 (426)
Q Consensus 120 ~i~V~~ 125 (426)
.|.|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 208
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-15 Score=118.19 Aligned_cols=78 Identities=27% Similarity=0.469 Sum_probs=72.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
..+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 7889999999999999999999994 4899999999999999999999999999999999
Q ss_pred EeecCCC
Q 014331 220 YAVRDDD 226 (426)
Q Consensus 220 ~a~~~~~ 226 (426)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988654
No 209
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.8e-16 Score=124.02 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=66.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||+++|+++|+++|+.||.| .|.| ++|||||+|.+.++|++|| .+|+..| .|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEEEEE
Confidence 456899999999999999999999999955 8887 3789999999999999999 6899999 799999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 210
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=8.3e-16 Score=123.96 Aligned_cols=79 Identities=27% Similarity=0.520 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
....+..+|||+|| +..+++++|+++|++||.|..|.+.+|||||+|.+.++|++|++.|||..|+|+.|.|.++....
T Consensus 26 ~~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 26 EGELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp --CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 34567789999999 78999999999999999999999999999999999999999999999999999999999998753
No 211
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=4.7e-16 Score=142.52 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEE--------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYG--KVDRVDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~V~~v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
..++|||+||++.+|+++|+++|+.|| +|+.|.| ++|||||+|.+.++|++||+.|||..| +|+.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 467899999999999999999999999 9999998 378999999999999999999999999 8999999
Q ss_pred EEeecc
Q 014331 124 EWTKHE 129 (426)
Q Consensus 124 ~~a~~~ 129 (426)
.|+...
T Consensus 145 ~~a~~~ 150 (229)
T 3q2s_C 145 TPVNKQ 150 (229)
T ss_dssp EECCHH
T ss_pred EECCCC
Confidence 998653
No 212
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=7.8e-16 Score=135.36 Aligned_cols=76 Identities=16% Similarity=0.388 Sum_probs=70.8
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||+.+|+++|+++|+.||+|+.|.|. +|||||+|.+.++|++||+.|||..| +|+.|.|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEEEEE
Confidence 446899999999999999999999999999999993 69999999999999999999999999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97654
No 213
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=3.2e-16 Score=117.54 Aligned_cols=67 Identities=18% Similarity=0.445 Sum_probs=62.3
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
+|||+|||..+|+++|+++|++||+|..|.|. +|||||+|.+.++|++||+ +++..| .|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~--~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNV--GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCB--TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeE--CCEEEEEEEC
Confidence 69999999999999999999999999999983 7899999999999999995 588888 8999999875
No 214
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.9e-15 Score=117.37 Aligned_cols=78 Identities=21% Similarity=0.432 Sum_probs=71.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++ ||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3456789999999 7899999999999999999999994 5799999999999999998 9999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++..+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987643
No 215
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-15 Score=117.38 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCC--CceEEEEEe
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLT--DRVISVEYA 221 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~~a 221 (426)
....+.++|||+|| |..+++++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|. |+.|.|+++
T Consensus 12 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 12 GKANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 34566789999999 7889999999999999999999997 569999999999999999999999999 999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
+.+.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 216
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-16 Score=130.94 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=66.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
...++|||+|||+.+|+++|+++|..||.|.. +.| ++|||||+|.+.++|++||+ |||..| .|+.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~V~ 99 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQVH 99 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEEEE
Confidence 45689999999999999999999999999976 333 37999999999999999997 999999 89999999
Q ss_pred Eeecc
Q 014331 125 WTKHE 129 (426)
Q Consensus 125 ~a~~~ 129 (426)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 217
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=119.76 Aligned_cols=79 Identities=33% Similarity=0.493 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+..+|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4556789999999 7899999999999999999999994 469999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99988644
No 218
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=123.10 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcC--CCCCCCceEEEEEee
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATN--MSKLTDRVISVEYAV 222 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~ 222 (426)
...+.++|||+|| |+.+++++|+++|++||.|+.|.|. +|||||+|++.++|.+|++.|+ +..|.|+.|.|.|++
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 3566889999999 7899999999999999999999997 6899999999999999999887 478999999999998
Q ss_pred cCCC
Q 014331 223 RDDD 226 (426)
Q Consensus 223 ~~~~ 226 (426)
.+..
T Consensus 106 ~k~~ 109 (119)
T 2ad9_A 106 HKEL 109 (119)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7643
No 219
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=121.91 Aligned_cols=77 Identities=29% Similarity=0.372 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.....+|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999 7889999999999999999999996 38999999999999999999999999999999999
Q ss_pred eecCC
Q 014331 221 AVRDD 225 (426)
Q Consensus 221 a~~~~ 225 (426)
++...
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98753
No 220
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=119.20 Aligned_cols=76 Identities=26% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCCCCCHHHHH----HhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLE----RHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
.....+|||+|| |..+++++|+ ++|++||.|..|.|+ ++||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 6 ~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345689999999 7999999999 999999999999997 889999999999999999999999999999999
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
++|+..
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999764
No 221
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-15 Score=118.34 Aligned_cols=79 Identities=19% Similarity=0.413 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 12 ~~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999 7899999999999999999999995 389999999999999999999999999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.++....
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998753
No 222
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=4.1e-16 Score=130.79 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=67.9
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGK---VDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 121 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i 121 (426)
....++|||+|||+++|+++|+++|+.||. |..|.|. +|||||+|.+.++|++||+ |||..| .|+.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM--GHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES--SSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCEEE
Confidence 345789999999999999999999999999 7888883 7899999999999999997 999999 79999
Q ss_pred EEEEeecc
Q 014331 122 RVEWTKHE 129 (426)
Q Consensus 122 ~V~~a~~~ 129 (426)
.|.++...
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988543
No 223
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=7.6e-15 Score=119.61 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34567889999999 7899999999999999999999995 46999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 014331 218 VEYAVRDDDD 227 (426)
Q Consensus 218 v~~a~~~~~~ 227 (426)
|.|+..+...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876443
No 224
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=8.9e-16 Score=126.37 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=69.2
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
....++|||+|| ++|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.|||..| .|+.|.|.|+...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEEeCCC
Confidence 345789999996 69999999999999999999995 89999999999999999999999999 8999999999775
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 225
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=2.2e-15 Score=115.79 Aligned_cols=74 Identities=35% Similarity=0.580 Sum_probs=69.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
..+.++|||+|| |..+++++|+++|.+||.|..|.+ .+|||||+|.+.++|.+|++.|||..|+|+.|.|+
T Consensus 4 ~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999 788999999999999999999998 37899999999999999999999999999999999
Q ss_pred Eee
Q 014331 220 YAV 222 (426)
Q Consensus 220 ~a~ 222 (426)
+|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 226
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=119.98 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEecCCCCC-CCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcC--CCCCCCceEEEEE
Q 014331 146 TNTRPSKTLFVINFDPYH-TRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATN--MSKLTDRVISVEY 220 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~-~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l~v~~ 220 (426)
....+..+|||+|| |+. +++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.+
T Consensus 20 ~~~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 20 QKQELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CSSCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred ccCCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34667899999999 786 9999999999999999999996 6899999999999999999885 4669999999999
Q ss_pred eecCC
Q 014331 221 AVRDD 225 (426)
Q Consensus 221 a~~~~ 225 (426)
+....
T Consensus 99 a~~~~ 103 (112)
T 1x4f_A 99 SEKYK 103 (112)
T ss_dssp ECSCS
T ss_pred Ccccc
Confidence 98754
No 227
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=115.78 Aligned_cols=74 Identities=16% Similarity=0.369 Sum_probs=69.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE---------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
...+|||+|| |..+++++|+++|.+||.|..|.+ .+|||||+|.+.++|++|++.|||..|+|+.|.|++
T Consensus 3 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4679999999 789999999999999999999998 578999999999999999999999999999999999
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9764
No 228
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1e-15 Score=137.96 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=88.8
Q ss_pred eEEEEecCCchhHHhhhc-CCcceecCeecccccchhh---h-----------------------h----------ccCC
Q 014331 12 YLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIA---A-----------------------F----------EVAM 54 (426)
Q Consensus 12 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-----------------------~----------~~~~ 54 (426)
.++||.|.+.+++++|+. +++..+.|..+.+...... + + ...+
T Consensus 43 g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p 122 (205)
T 3tyt_A 43 GAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHP 122 (205)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCC
Confidence 479999999999999986 7777777765543311000 0 0 0123
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEe------CCEEEEEEcChHhHHHHHHhcCCceecCCCc----EEE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKV--DRVDMK------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGR----RLR 122 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V--~~v~i~------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~----~i~ 122 (426)
.++|||+|||+.+|+++|+++|+.||.| ..|.|. +|||||+|.+.++|.+||..|||..| .|. +|.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~--~g~~~~~p~~ 200 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM--KNPNGPYPYT 200 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE--CCSSSSSCEE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc--cCCCCCcceE
Confidence 5689999999999999999999999999 888883 48999999999999999999999999 565 577
Q ss_pred EEEe
Q 014331 123 VEWT 126 (426)
Q Consensus 123 V~~a 126 (426)
|+|+
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 229
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.9e-15 Score=116.72 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=70.6
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.....+.++|||+|| |..+++++|+++|++||.|..|.|+ ++||||+|.+.++|++|++.|||..|.|+.|
T Consensus 10 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CSCCCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 344567789999999 7899999999999999999999994 4799999999999999999999999999999
Q ss_pred EEEEee
Q 014331 217 SVEYAV 222 (426)
Q Consensus 217 ~v~~a~ 222 (426)
.|+||+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 230
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-15 Score=117.56 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 10 KTFTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CcCCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34566789999999 7889999999999999999999997 58999999999999999999999999999999999987
Q ss_pred CC
Q 014331 224 DD 225 (426)
Q Consensus 224 ~~ 225 (426)
+.
T Consensus 89 ~~ 90 (99)
T 2cpj_A 89 SA 90 (99)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 231
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5e-15 Score=118.47 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
....+..+|||+|| |..+++++|+++|.+|| |..|.|+ +|||||+|.+.++|++|+ .||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 10 LPKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCSSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34456789999999 78999999999999999 9999985 569999999999999999 999999999999
Q ss_pred EEEEeecCCCC
Q 014331 217 SVEYAVRDDDD 227 (426)
Q Consensus 217 ~v~~a~~~~~~ 227 (426)
.|+++..+...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999886543
No 232
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=7.5e-16 Score=130.76 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=68.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE-----eCCEEEEEEcChHhHHHHHHhcCCceecCCCc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM-----KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGR 119 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i-----~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~ 119 (426)
...++|||+|||+.+|+++|+++|+.||.|.. |.+ .+|||||+|.+.++|.+||+.|||..| .|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CCc
Confidence 45789999999999999999999999999875 433 378999999999999999999999999 899
Q ss_pred EEEEEEeeccC
Q 014331 120 RLRVEWTKHER 130 (426)
Q Consensus 120 ~i~V~~a~~~~ 130 (426)
.|.|.|+....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 233
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-15 Score=117.72 Aligned_cols=79 Identities=28% Similarity=0.491 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34566899999999 7889999999999999999999995 46999999999999999999999999999999
Q ss_pred EEEeecCC
Q 014331 218 VEYAVRDD 225 (426)
Q Consensus 218 v~~a~~~~ 225 (426)
|.++..+.
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 234
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=120.42 Aligned_cols=79 Identities=33% Similarity=0.494 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 8 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999 7889999999999999999999983 679999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987643
No 235
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6e-15 Score=119.36 Aligned_cols=81 Identities=28% Similarity=0.500 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcC------CCC
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATN------MSK 210 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~------g~~ 210 (426)
.....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.|| +..
T Consensus 9 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCcCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 344567889999999 7899999999999999999999995 6799999999999999999999 999
Q ss_pred CCCceEEEEEeecCCC
Q 014331 211 LTDRVISVEYAVRDDD 226 (426)
Q Consensus 211 ~~g~~l~v~~a~~~~~ 226 (426)
|.|+.|.|.++..+..
T Consensus 88 ~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSSCEEEEECCCCCCC
T ss_pred EcCEEEEEEECCCCcc
Confidence 9999999999987543
No 236
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=8.1e-16 Score=124.29 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=69.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
....+|||+|| |+.+++++|+++|++|| .|..+.|. +|||||+|.+.++|++|++.|||..|+|+.|.|+++..
T Consensus 26 ~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34679999999 79999999999999999 99999995 79999999999999999999999999999999999875
Q ss_pred C
Q 014331 224 D 224 (426)
Q Consensus 224 ~ 224 (426)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 237
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-15 Score=118.11 Aligned_cols=77 Identities=27% Similarity=0.408 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
.+.++|||+|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45789999999 7889999999999999999999885 36999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987643
No 238
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=122.41 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=65.6
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
..+|||+|||+++|+++|+++|+.| .|..|.| ++|||||+|.+.++|++|| .||+..| .|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEECC
Confidence 4689999999999999999999999 8999998 3899999999999999999 8999999 79999998876
Q ss_pred cc
Q 014331 128 HE 129 (426)
Q Consensus 128 ~~ 129 (426)
..
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 239
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=118.74 Aligned_cols=77 Identities=26% Similarity=0.470 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEE-EEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV-RIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v-~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
.+..+|||+|| |..+++++|+++|++||.|..| .|+ +|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999 7889999999999999999988 774 5799999999999999999999999999999999
Q ss_pred EeecCCC
Q 014331 220 YAVRDDD 226 (426)
Q Consensus 220 ~a~~~~~ 226 (426)
++..+..
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987643
No 240
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=3.1e-15 Score=114.36 Aligned_cols=73 Identities=23% Similarity=0.439 Sum_probs=68.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
+.+|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|++|+..|||..++|+.|.|.++.
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 358999999 7889999999999999999999985 6799999999999999999999999999999999998
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
.+
T Consensus 80 ~~ 81 (83)
T 3md1_A 80 KL 81 (83)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 241
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.9e-15 Score=117.52 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=73.5
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHc-CCCCCCCc
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDAT-NMSKLTDR 214 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l-~g~~~~g~ 214 (426)
.....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+..| |+..|.|+
T Consensus 9 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 9 VPKKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred cccCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 344567899999999 7899999999999999999999994 579999999999999999999 99999999
Q ss_pred eEEEEEeecCCC
Q 014331 215 VISVEYAVRDDD 226 (426)
Q Consensus 215 ~l~v~~a~~~~~ 226 (426)
.|.|.++..+..
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999988644
No 242
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.7e-15 Score=128.38 Aligned_cols=79 Identities=27% Similarity=0.410 Sum_probs=72.3
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+.++|||+|| |..+++++|+++|++||.|+.|.|+ ++||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 35 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999 7899999999999999999999994 479999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
+|+.....
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987544
No 243
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=6.6e-17 Score=132.24 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEE--------eCCEEEEEEcChHhHHHHHHhcCCceecC
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDR--------VDM--------KSGFAFIYMDDERDAEDAIRGLDRTEFGR 116 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~--------v~i--------~~g~aFV~F~~~~~A~~Al~~lng~~~~~ 116 (426)
...++|||+|||..+|+++|+++|+.||.|.. |.| .+|||||+|.+.++|++||+.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-- 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 82 (116)
Confidence 45789999999999999999999999999988 666 268999999999999999999999999
Q ss_pred CCcEEEEEEeeccCCCC
Q 014331 117 KGRRLRVEWTKHERGIR 133 (426)
Q Consensus 117 ~g~~i~V~~a~~~~~~~ 133 (426)
.|+.|.|.|+.......
T Consensus 83 ~g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 83 SGNPIKVSFATRRADFN 99 (116)
Confidence 89999999998776443
No 244
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=115.51 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=67.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.+..+|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 4 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45689999999 7889999999999999999999995 46999999999999999999999999999999999
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
+..+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 245
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=3.7e-15 Score=117.41 Aligned_cols=75 Identities=20% Similarity=0.467 Sum_probs=70.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
++++|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4679999999 7899999999999999999999995 679999999999999999999999999999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
..+.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8753
No 246
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=113.75 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHc-CCCCCCCceEEEEEee
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDAT-NMSKLTDRVISVEYAV 222 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~a~ 222 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|+..| +|..+.|+.|.|+||+
T Consensus 7 ~~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34466789999999 7889999999999999999999996 599999999999999999999 9999999999999984
No 247
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=123.02 Aligned_cols=80 Identities=25% Similarity=0.408 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
......++|||+|| +..+++++|+++|+.||.|+.|.|. +|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 37 ~~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 44566789999999 7899999999999999999999985 67999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|+++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987643
No 248
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=4.6e-15 Score=115.79 Aligned_cols=77 Identities=26% Similarity=0.392 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
..+..+|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456789999999 7899999999999999999999985 589999999999999999999999999999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
+...
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 249
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=3.7e-15 Score=121.52 Aligned_cols=80 Identities=23% Similarity=0.450 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| +..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.||+..|.|+.|.
T Consensus 20 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456789999999 7899999999999999999999885 36999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|++++.+..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987643
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=117.55 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=69.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCc-eEEEEE-ecCEEEEEecCHHHHHHHHHHcCC-CCCCCceEEEEEeecC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRI-RRNFAFVQYEVQEDATRALDATNM-SKLTDRVISVEYAVRD 224 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~-v~~v~i-~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~~~ 224 (426)
..+.++|||+|| +..+++++|+++|.+||. |..+.+ .++||||+|.+.++|++|++.||| ..|+|+.|.|+++..+
T Consensus 5 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 456789999999 789999999999999999 655555 589999999999999999999999 9999999999999875
Q ss_pred C
Q 014331 225 D 225 (426)
Q Consensus 225 ~ 225 (426)
.
T Consensus 84 ~ 84 (93)
T 2cqh_A 84 K 84 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 251
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=118.73 Aligned_cols=77 Identities=23% Similarity=0.452 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
..+..+|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 20 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 455689999999 7899999999999999999999995 5799999999999999999999999999999999
Q ss_pred EeecCC
Q 014331 220 YAVRDD 225 (426)
Q Consensus 220 ~a~~~~ 225 (426)
++..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998753
No 252
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=116.46 Aligned_cols=78 Identities=36% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.....+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 9 ~~~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344566789999999 7889999999999999999999985 4699999999999999999999999999999
Q ss_pred EEEEeec
Q 014331 217 SVEYAVR 223 (426)
Q Consensus 217 ~v~~a~~ 223 (426)
.|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 253
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=4.6e-15 Score=138.89 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=96.8
Q ss_pred eeeeeeeeEEEEecCCchhHHhhhc-CCcceecCeecccccchhhhhccCCCccEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014331 5 VSVYQCHYLLIVYSHSVWPVQKKYL-PRRLYVLGFRRSHSQLSIAAFEVAMMRPIFCGNFEYDARQSDLERLFRRYGKVD 83 (426)
Q Consensus 5 vs~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~ 83 (426)
|.+.....++||.|.+.+++++++. +++..+.+..+.+... ....+|||+|||..+|+++|+++|+.||.|.
T Consensus 52 v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a-------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 124 (261)
T 3sde_A 52 VFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA-------THGAALTVKNLSPVVSNELLEQAFSQFGPVE 124 (261)
T ss_dssp EEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC-------CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred EEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec-------ccCCcccccCCCCCCCHHHHHHHHHhcCCeE
Confidence 4444445689999999999999986 6777777665554322 3467999999999999999999999999999
Q ss_pred EEEEe-------CCEEEEEEcChHhHHHHHHhcCC-cee-cCCCcEEEEEEeeccC
Q 014331 84 RVDMK-------SGFAFIYMDDERDAEDAIRGLDR-TEF-GRKGRRLRVEWTKHER 130 (426)
Q Consensus 84 ~v~i~-------~g~aFV~F~~~~~A~~Al~~lng-~~~-~~~g~~i~V~~a~~~~ 130 (426)
.|.|. +|||||+|.+.++|.+||..||+ ..+ +..+++|.|.++....
T Consensus 125 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 125 KAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99983 78999999999999999999954 444 1239999999997654
No 254
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=5.5e-16 Score=124.85 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=67.6
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGK---VDRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLR 122 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~---V~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~ 122 (426)
...++|||+|||+.+|+++|+++|+.||. |..|.| ++|||||+|.+.++|++||+ ||+..| .|+.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr~i~ 85 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM--GQRYVE 85 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSSCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee--CCeEEE
Confidence 45789999999999999999999999998 888988 37899999999999999997 999999 799999
Q ss_pred EEEeecc
Q 014331 123 VEWTKHE 129 (426)
Q Consensus 123 V~~a~~~ 129 (426)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998654
No 255
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=119.07 Aligned_cols=78 Identities=18% Similarity=0.428 Sum_probs=72.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
....++|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.|++...
T Consensus 22 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 455789999999 7899999999999999999999997 6999999999999999999999999999999999998764
Q ss_pred C
Q 014331 226 D 226 (426)
Q Consensus 226 ~ 226 (426)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 256
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=5.3e-16 Score=130.53 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=67.0
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~ 124 (426)
....++|||+|||+++|+++|+++|+.|| |+.|.|. +|||||+|.+.++|++|| .||+..| .|+.|.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEEEE
Confidence 35578999999999999999999999999 6688883 789999999999999999 8999999 79999999
Q ss_pred EeeccC
Q 014331 125 WTKHER 130 (426)
Q Consensus 125 ~a~~~~ 130 (426)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 987654
No 257
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=5.7e-15 Score=118.70 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
....+..+|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567889999999 7899999999999999999999986 679999999999999999999999999999999
Q ss_pred EEee
Q 014331 219 EYAV 222 (426)
Q Consensus 219 ~~a~ 222 (426)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 258
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=5.8e-15 Score=119.30 Aligned_cols=78 Identities=22% Similarity=0.443 Sum_probs=72.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 22 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456789999999 7899999999999999999999995 589999999999999999999999999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.++..+.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998764
No 259
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-15 Score=120.05 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
..++|||+|| |..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|++|++.|||..|.|+.|.|+|+...
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3579999999 7889999999999999999999995 789999999999999999999999999999999999874
No 260
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.1e-14 Score=115.76 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
...+..+|||+|| +..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.|||..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4456789999999 7889999999999999999999985 4799999999999999999999999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99764
No 261
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-14 Score=115.32 Aligned_cols=78 Identities=28% Similarity=0.469 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| |..+++++|+++|.+|| |..|.|+ +|||||+|.+.++|++|+ .|||..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34556789999999 78999999999999997 9999985 569999999999999999 8999999999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|+++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987543
No 262
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=8.8e-15 Score=117.40 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCC---CCc
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKL---TDR 214 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 214 (426)
....+..+|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 8 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34566789999999 7899999999999999999999995 47999999999999999999999988 899
Q ss_pred eEEEEEeecCCC
Q 014331 215 VISVEYAVRDDD 226 (426)
Q Consensus 215 ~l~v~~a~~~~~ 226 (426)
.|.|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987643
No 263
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.6e-15 Score=115.27 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
.......+|||+|| +..+++++|+++|.+||.|. +.+. +|||||+|.+.++|++|++.|||..|.|+.|.|+++
T Consensus 14 ~~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 14 EGAPLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSSCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34455789999999 78999999999999999986 4553 789999999999999999999999999999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
..+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 264
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=117.91 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=67.2
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCc--eEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCC----CC
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGK--IISVRIR--------RNFAFVQYEVQEDATRALDATNMSK----LT 212 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~--v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~----~~ 212 (426)
......+|||+|| +..+++++|+++|++||. |..|.++ +|||||+|.+.++|++|++.|||.. |+
T Consensus 5 ~~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 5 HHHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SSCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred cCCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 3456789999999 788999999999999995 5677773 6799999999999999999999974 88
Q ss_pred CceEEEEEeec
Q 014331 213 DRVISVEYAVR 223 (426)
Q Consensus 213 g~~l~v~~a~~ 223 (426)
|+.|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999975
No 265
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=117.14 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=63.9
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
...++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++| ++..+.+.|..|.|.++...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCC
Confidence 346899999999999999999999999999999994 89999999999999754 44444348999999999776
Q ss_pred C
Q 014331 130 R 130 (426)
Q Consensus 130 ~ 130 (426)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 266
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.4e-15 Score=117.07 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhcc-CCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCC-CCCceEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEP-YGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSK-LTDRVISV 218 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~-~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~l~v 218 (426)
..+..+|||+|| +..+++++|+++|.+ ||.|..|.|+ +|||||+|.+.++|.+|++.|||.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999 788999999999999 9999999994 6799999999999999999999999 99999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++..+..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977543
No 267
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-15 Score=118.75 Aligned_cols=73 Identities=27% Similarity=0.383 Sum_probs=68.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
++|||+|| |..+++++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..+.|+.|.|.++....
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999 7889999999999999999999994 6899999999999999999999999999999999998864
No 268
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.3e-15 Score=119.94 Aligned_cols=74 Identities=20% Similarity=0.556 Sum_probs=68.0
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++||+ ++..| +|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEEE
Confidence 346899999999999999999999999999999993 6999999999999999996 99999 899999999
Q ss_pred eeccC
Q 014331 126 TKHER 130 (426)
Q Consensus 126 a~~~~ 130 (426)
+....
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 98654
No 269
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=119.82 Aligned_cols=79 Identities=34% Similarity=0.541 Sum_probs=72.6
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
.......++|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 23 ~~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344566789999999 7889999999999999999999996 789999999999999999999999999999999
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
+++..+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999764
No 270
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=118.46 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceE--------EEEEe--------cCEEEEEecCHHHHHHHHHHcCCC
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII--------SVRIR--------RNFAFVQYEVQEDATRALDATNMS 209 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~ 209 (426)
......++|||+|| +..+++++|+++|.+||.|. .|.|. +|||||+|.+.++|++|++.|||.
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34567889999999 78999999999999999998 57774 579999999999999999999999
Q ss_pred CCCCceEEEEEeecCCC
Q 014331 210 KLTDRVISVEYAVRDDD 226 (426)
Q Consensus 210 ~~~g~~l~v~~a~~~~~ 226 (426)
.|.|+.|.|.++..+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999988643
No 271
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=117.25 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.....+..+|||+|| +..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 20 ~~~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344566789999999 7889999999999999999999985 5799999999999999999999999999999
Q ss_pred EEEEeecC
Q 014331 217 SVEYAVRD 224 (426)
Q Consensus 217 ~v~~a~~~ 224 (426)
.|.+++.+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999875
No 272
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-14 Score=112.70 Aligned_cols=77 Identities=30% Similarity=0.456 Sum_probs=70.1
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
....+..+|||+|| .+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 10 ~~~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34456789999997 67899999999999999999996 78999999999999999999999999999999999987
Q ss_pred CC
Q 014331 224 DD 225 (426)
Q Consensus 224 ~~ 225 (426)
+.
T Consensus 87 ~~ 88 (97)
T 1x5p_A 87 QP 88 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 273
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-14 Score=116.26 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=71.4
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.....+.++|||+|| |..+++++|+++|.+||.|..|.|. ++||||+|.+.++|++|++.|++ .|.|+.|
T Consensus 11 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CcCCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 344567899999999 7899999999999999999999995 46999999999999999999998 8999999
Q ss_pred EEEEeecCC
Q 014331 217 SVEYAVRDD 225 (426)
Q Consensus 217 ~v~~a~~~~ 225 (426)
.|+++....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999997653
No 274
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.57 E-value=1e-15 Score=119.43 Aligned_cols=74 Identities=24% Similarity=0.432 Sum_probs=66.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCC-ceEEEEEe--------cCEEEEEecCHHHHHHHHHHc-CCCCCCCceEEEEE
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYG-KIISVRIR--------RNFAFVQYEVQEDATRALDAT-NMSKLTDRVISVEY 220 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G-~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~l~v~~ 220 (426)
+++|||+|| |..+++++|+++|++|| .|..|.|+ +|||||+|.+.++|++|++.| ++..++|+.|.|++
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 468999999 78999999999999999 89999884 689999999999999999987 46679999999999
Q ss_pred eecCC
Q 014331 221 AVRDD 225 (426)
Q Consensus 221 a~~~~ 225 (426)
|.++.
T Consensus 80 a~~~~ 84 (91)
T 2lxi_A 80 SDPKP 84 (91)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 98753
No 275
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=121.07 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=70.2
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHH----HhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLE----RHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
...+..+|||+|| +..+++++|+ ++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 25 ~~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3456789999999 7888898876 799999999999884 68999999999999999999999999999999
Q ss_pred EEEeecCC
Q 014331 218 VEYAVRDD 225 (426)
Q Consensus 218 v~~a~~~~ 225 (426)
|.||+.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998753
No 276
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=115.08 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=70.0
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE--------EEEe--------cCEEEEEecCHHHHHHHHHHcCC
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRIR--------RNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g 208 (426)
.....+..+|||+|| +..+++++|+++|++||.|.. |.|. +|||||+|.+.++|++|++.|||
T Consensus 7 ~~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 7 HHSHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CCSCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 344567899999999 789999999999999999998 8774 56999999999999999999999
Q ss_pred CCCCCceEEEEEee
Q 014331 209 SKLTDRVISVEYAV 222 (426)
Q Consensus 209 ~~~~g~~l~v~~a~ 222 (426)
..|.|+.|.|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999974
No 277
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=115.08 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=69.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE----ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI----RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
...+..+|||+|| |..+++++|+++|.+||.|.-+.. .+|||||+|.+.++|++|++.|||..|.|+.|.|+++.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4566899999999 788999999999999999843332 36899999999999999999999999999999999998
Q ss_pred cCC
Q 014331 223 RDD 225 (426)
Q Consensus 223 ~~~ 225 (426)
...
T Consensus 90 ~~~ 92 (101)
T 2fc9_A 90 PRG 92 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 278
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=124.34 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=65.7
Q ss_pred cCCCccEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEE-------eCCEEEEEEcChHhHHHHHHhcCCceecCCCcE
Q 014331 52 VAMMRPIFCGNFEYDARQSDLERLFRRYGKV----DRVDM-------KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~V----~~v~i-------~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~ 120 (426)
.....+|||+|||+++|+++|+++|+.||+| ..|.| ++|||||+|.+.++|++||+ +|+..| .|+.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l--~gR~ 96 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLL--GKRY 96 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEES--SSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCee--CCeE
Confidence 3557899999999999999999999999986 57777 37999999999999999996 499998 7999
Q ss_pred EEEEEeecc
Q 014331 121 LRVEWTKHE 129 (426)
Q Consensus 121 i~V~~a~~~ 129 (426)
|.|..+...
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999887543
No 279
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=118.07 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHH---HhhccCCceEEEEEec-----------CEEEEEecCHHHHHHHHHHcCCCCCC
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLE---RHFEPYGKIISVRIRR-----------NFAFVQYEVQEDATRALDATNMSKLT 212 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~---~~F~~~G~v~~v~i~~-----------g~afV~f~~~~~A~~A~~~l~g~~~~ 212 (426)
.....++|||+|| |..+++++|+ ++|.+||.|..|.|++ |||||+|.+.++|++|++.|||..|+
T Consensus 11 r~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 3456789999999 7899999999 9999999999999852 69999999999999999999999999
Q ss_pred CceEEEEEeecCC
Q 014331 213 DRVISVEYAVRDD 225 (426)
Q Consensus 213 g~~l~v~~a~~~~ 225 (426)
|+.|.|++|..+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998764
No 280
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=1e-14 Score=114.98 Aligned_cols=77 Identities=27% Similarity=0.504 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCCHHHHH----HhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLE----RHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
..+.++|||+|| |..+++++|+ ++|.+||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 5 ~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456889999999 7899999999 999999999999996 699999999999999999999999999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.++..+.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998753
No 281
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=115.78 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=70.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
...+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3456789999999 7889999999999999999999995 5799999999999999999999999999999999
Q ss_pred Eeec
Q 014331 220 YAVR 223 (426)
Q Consensus 220 ~a~~ 223 (426)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 282
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=4.3e-15 Score=118.03 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=68.7
Q ss_pred CCcEEEEecCCCC------CCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCC-c
Q 014331 150 PSKTLFVINFDPY------HTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTD-R 214 (426)
Q Consensus 150 ~~~~l~v~nl~p~------~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g-~ 214 (426)
..++|||+|| |. .+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|.| +
T Consensus 5 ~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3679999999 78 88899999999999999999984 6899999999999999999999999999 9
Q ss_pred eEEEEEeecC
Q 014331 215 VISVEYAVRD 224 (426)
Q Consensus 215 ~l~v~~a~~~ 224 (426)
.|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 283
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=114.42 Aligned_cols=80 Identities=26% Similarity=0.442 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
....+.++|||+|| +..+++++|+++|..|+.|..+... +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 10 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 10 ARSQPSKTLFVKGL-SEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSCCCSSEEEECC-CTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCC-CCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44567899999999 7899999999999999766555442 57999999999999999999999999999999999
Q ss_pred eecCCC
Q 014331 221 AVRDDD 226 (426)
Q Consensus 221 a~~~~~ 226 (426)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 988644
No 284
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=1.1e-14 Score=121.26 Aligned_cols=79 Identities=35% Similarity=0.526 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 41 ~~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566789999999 7889999999999999999999995 57999999999999999999999999999999
Q ss_pred EEEeecCC
Q 014331 218 VEYAVRDD 225 (426)
Q Consensus 218 v~~a~~~~ 225 (426)
|+|+..++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998753
No 285
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=4.2e-15 Score=122.70 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=64.7
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVD--RVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~--~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
...++|||+|||+++|+++|+++|+.| .|+ .|.|. +|||||+|.+.++|++||+ +++..| .|+.|.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l--~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERI--GHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCB--TTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEE--CCEEEEE
Confidence 457899999999999999999999999 576 88883 7999999999999999995 578888 7999999
Q ss_pred EEeecc
Q 014331 124 EWTKHE 129 (426)
Q Consensus 124 ~~a~~~ 129 (426)
.++...
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988643
No 286
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=1.5e-14 Score=118.33 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=69.5
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+.++|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 35 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999 7889999999999999999999995 57999999999999999999999999999999
Q ss_pred EEEee
Q 014331 218 VEYAV 222 (426)
Q Consensus 218 v~~a~ 222 (426)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 287
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-15 Score=112.28 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=67.7
Q ss_pred CCCCcE-EEEecCCCCCCCHHH----HHHhhccC-CceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 148 TRPSKT-LFVINFDPYHTRTRD----LERHFEPY-GKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 148 ~~~~~~-l~v~nl~p~~~~~~~----L~~~F~~~-G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
.+++.+ |||.|| |+.+++++ |.++|.+| |+|.+|. .|+|||+|.+.++|.+|++.|||..+.|+.|.|.||
T Consensus 5 ~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 5 SSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 345666 999999 89999887 55899999 5999994 499999999999999999999999999999999999
Q ss_pred ecCCC
Q 014331 222 VRDDD 226 (426)
Q Consensus 222 ~~~~~ 226 (426)
+.+.+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 98654
No 288
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.9e-15 Score=117.77 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=69.9
Q ss_pred CCCCcEEEE--ecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCC-----CCceEEE
Q 014331 148 TRPSKTLFV--INFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKL-----TDRVISV 218 (426)
Q Consensus 148 ~~~~~~l~v--~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~-----~g~~l~v 218 (426)
..++.+||| +|| ++.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..| .|..|.|
T Consensus 22 ~~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 22 SYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SSCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 456789999 669 7899999999999999999999996 67999999999999999999999988 6899999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.|+....
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9998654
No 289
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.4e-15 Score=117.59 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
....++|||+|| +..+++++|+++|.+||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.|++.
T Consensus 24 ~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 345689999999 7899999999999999999999995 78999999999999999999999999999999999875
No 290
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=116.59 Aligned_cols=79 Identities=27% Similarity=0.422 Sum_probs=70.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCce----EEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI----ISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v----~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+..+|||+|| |..+++++|+++|.+||.| ..+.+. +|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456789999999 7899999999999999998 566654 689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 014331 219 EYAVRDDD 226 (426)
Q Consensus 219 ~~a~~~~~ 226 (426)
.++.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99988643
No 291
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=6.2e-15 Score=134.73 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=69.7
Q ss_pred cCCCccEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceecC----
Q 014331 52 VAMMRPIFCGNFEYDA---------RQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFGR---- 116 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~---------te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~~---- 116 (426)
....++|||+||+..+ |+++|+++|++||+|++|.| .+|||||+|.+.++|+.|+++|||..|.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4457899999999998 79999999999999999998 48999999999999999999999998822
Q ss_pred ------CCcEEEEEEeeccC
Q 014331 117 ------KGRRLRVEWTKHER 130 (426)
Q Consensus 117 ------~g~~i~V~~a~~~~ 130 (426)
.|+.|.|.||....
T Consensus 211 e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGSCCCEEEECC---
T ss_pred cccccCCCCEEEEEEccCCC
Confidence 58999999997654
No 292
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=116.25 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=69.7
Q ss_pred CCCCCcEEEEecCCCCCC------CHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCc
Q 014331 147 NTRPSKTLFVINFDPYHT------RTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDR 214 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~------~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 214 (426)
.....++|||+|| |..+ ++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3445789999999 6777 689999999999999999996 68999999999999999999999999998
Q ss_pred -eEEEEEeecC
Q 014331 215 -VISVEYAVRD 224 (426)
Q Consensus 215 -~l~v~~a~~~ 224 (426)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 293
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=115.07 Aligned_cols=76 Identities=20% Similarity=0.332 Sum_probs=69.9
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceE-EEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCce---
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKII-SVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRV--- 215 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~-~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 215 (426)
..+..+|||+|| |..+++++|+++|.+||.|. .|.|. +|||||+|.+.++|++|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999 78899999999999999999 99884 379999999999999999999999999999
Q ss_pred -EEEEEeecC
Q 014331 216 -ISVEYAVRD 224 (426)
Q Consensus 216 -l~v~~a~~~ 224 (426)
|.|.||...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999764
No 294
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=116.00 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
........+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+.. |+..|.|+.|
T Consensus 10 ~~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 10 NSGADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred cCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344567899999999 7889999999999999999999985 36999999999999999998 9999999999
Q ss_pred EEEEeecCCC
Q 014331 217 SVEYAVRDDD 226 (426)
Q Consensus 217 ~v~~a~~~~~ 226 (426)
.|.++..+..
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999987643
No 295
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=114.37 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE--------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI--------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
......+|||+|| |..+++++|+++|.+||.|..+.+ .+|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3455789999999 799999999999999999875544 2689999999999999999999999999999999
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998753
No 296
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=115.30 Aligned_cols=74 Identities=16% Similarity=0.402 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.....+|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+. ++|..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 345689999999 7899999999999999999999996 5899999999999999999 999999999999999
Q ss_pred eec
Q 014331 221 AVR 223 (426)
Q Consensus 221 a~~ 223 (426)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 765
No 297
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=3.9e-15 Score=115.82 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=62.9
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCC--ceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
.+|||+|| +..+++++|+++|++|| .|..|.++ +|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 78999999999999999 99999884 579999999999999999999999999999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
....
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 8753
No 298
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.53 E-value=3.4e-14 Score=115.70 Aligned_cols=76 Identities=28% Similarity=0.466 Sum_probs=70.6
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
..+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 345789999999 7899999999999999999999995 5799999999999999999999999999999999998
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
..
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 299
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=115.71 Aligned_cols=75 Identities=27% Similarity=0.524 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
..++|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 7 ~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4579999999 7899999999999999999999885 679999999999999999999999999999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8753
No 300
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.6e-14 Score=117.17 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=62.8
Q ss_pred ccEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEE--------eCCEEEEEEcC----hHh----HHHHHH--hcCCce
Q 014331 56 RPIFCGNF----EYDARQSDLERLFRRYGKVDRVDM--------KSGFAFIYMDD----ERD----AEDAIR--GLDRTE 113 (426)
Q Consensus 56 ~~l~V~nL----p~~~te~~L~~~F~~~G~V~~v~i--------~~g~aFV~F~~----~~~----A~~Al~--~lng~~ 113 (426)
++|||+|| |+.+|+++|+++|+.||+|.+|.+ ++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999998 48999999996 444 889988 789999
Q ss_pred ecCCCcEEEEEEeec
Q 014331 114 FGRKGRRLRVEWTKH 128 (426)
Q Consensus 114 ~~~~g~~i~V~~a~~ 128 (426)
| .|+.|+|.+-..
T Consensus 83 I--~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 I--MGFKFEVILNKH 95 (136)
T ss_dssp E--TTEEEEEEECCT
T ss_pred e--cCcEEEEEECcc
Confidence 9 899999997643
No 301
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.52 E-value=2.6e-14 Score=110.70 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=67.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
.++|||+|| |..+++++|+++|.+||.|..|.++ +|||||+|.+.++|++|+ .|||..|.|+.|.|.+++
T Consensus 6 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999 7889999999999999999999985 569999999999999999 999999999999999997
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 302
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.2e-14 Score=111.09 Aligned_cols=78 Identities=18% Similarity=0.477 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+. ++..|+|+.|.
T Consensus 10 ~~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 34566789999999 7899999999999999999999985 4699999999999999998 46789999999
Q ss_pred EEEeecCCC
Q 014331 218 VEYAVRDDD 226 (426)
Q Consensus 218 v~~a~~~~~ 226 (426)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999988644
No 303
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.5e-14 Score=113.31 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCc-eEEEEEe---------cCEEEEEecCHHHHHHHHHHcC--CCCCCCceE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGK-IISVRIR---------RNFAFVQYEVQEDATRALDATN--MSKLTDRVI 216 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~-v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~l 216 (426)
.+.++|||+|| |..+++++|+++|.+||. |..|.++ +|||||+|.+.++|.+|++.|| +..|.|+.|
T Consensus 6 ~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999 789999999999999998 9999986 5799999999999999999996 589999999
Q ss_pred EEEEeecCCC
Q 014331 217 SVEYAVRDDD 226 (426)
Q Consensus 217 ~v~~a~~~~~ 226 (426)
.|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987543
No 304
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=110.44 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=67.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec--C-EEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR--N-FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~--g-~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
....+|||+|| +..+++++|+++|.+||.|..|.+.+ + ||||+|.+.++|.+|+. |||..|+|+.|.|.++....
T Consensus 6 ~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 45679999999 78999999999999999999984432 2 99999999999999999 99999999999999887654
Q ss_pred C
Q 014331 226 D 226 (426)
Q Consensus 226 ~ 226 (426)
.
T Consensus 84 ~ 84 (94)
T 2e5g_A 84 F 84 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 305
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.52 E-value=4.6e-14 Score=116.58 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
....+.++|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 30 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999 7899999999999999999999994 589999999999999999999999999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
++|....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9998753
No 306
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=109.85 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=61.4
Q ss_pred cEEEEecCCCCCC------CHHHHHHhhccCCceEEEEEe------cCEEEEEecCHHHHHHHHHHcCCCCCCCc-eEEE
Q 014331 152 KTLFVINFDPYHT------RTRDLERHFEPYGKIISVRIR------RNFAFVQYEVQEDATRALDATNMSKLTDR-VISV 218 (426)
Q Consensus 152 ~~l~v~nl~p~~~------~~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~l~v 218 (426)
++|||+|| |..+ ++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|+|+ .|.|
T Consensus 2 ~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 68999999 6777 679999999999999999986 68999999999999999999999999999 8876
No 307
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=5.6e-14 Score=112.40 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=67.1
Q ss_pred cCCCccEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEe---------CCEEEEEEcChHhHHHHHHhcCCceecCC
Q 014331 52 VAMMRPIFCGNFEY-----DARQSDLERLFRRYGKVDRVDMK---------SGFAFIYMDDERDAEDAIRGLDRTEFGRK 117 (426)
Q Consensus 52 ~~~~~~l~V~nLp~-----~~te~~L~~~F~~~G~V~~v~i~---------~g~aFV~F~~~~~A~~Al~~lng~~~~~~ 117 (426)
..++++|+|.||.. +.++++|+++|++||+|.+|.|. +|||||+|.+.++|.+|++.|||..| .
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~ 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--G 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--T
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--C
Confidence 35678999999963 23789999999999999999983 68999999999999999999999999 8
Q ss_pred CcEEEEEEeecc
Q 014331 118 GRRLRVEWTKHE 129 (426)
Q Consensus 118 g~~i~V~~a~~~ 129 (426)
|+.|.|.|+...
T Consensus 83 Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 83 GRVVKACFYNLD 94 (105)
T ss_dssp TEECEEEECCHH
T ss_pred CcEEEEEEcCHH
Confidence 999999998654
No 308
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=109.67 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE-EEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~-v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
......+|||+|| |+.+++++|+++|.+||.|.. |.|+ +|||||+|.+.++|++||.. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999 899999999999999999987 7773 68999999999999999997 999999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987643
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=5.9e-14 Score=115.29 Aligned_cols=72 Identities=25% Similarity=0.252 Sum_probs=65.5
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCE-EEEEecCHHHHHHHHHHcCCCCCCC--ceEEEEEeecCC
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNF-AFVQYEVQEDATRALDATNMSKLTD--RVISVEYAVRDD 225 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 225 (426)
.|||+|| ++.+++++|.++|++||.|..|.|. .|| |||+|.+.++|.+|++.|||..|.| +.|.|++|+...
T Consensus 27 ~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4679999 7999999999999999999999885 476 9999999999999999999999987 699999998753
No 310
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=109.07 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=68.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.....+|||+|| |..+++++|+++|..| .|..|.|+ +|||||+|.+.++|++|+. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 456789999999 7999999999999999 99999885 5699999999999999999 999999999999999
Q ss_pred eecCC
Q 014331 221 AVRDD 225 (426)
Q Consensus 221 a~~~~ 225 (426)
+....
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98753
No 311
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=115.79 Aligned_cols=76 Identities=22% Similarity=0.457 Sum_probs=69.3
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
...++|||+|| +..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++||+. ++..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34589999999 7899999999999999999999985 47999999999999999997 99999999999999
Q ss_pred eecCCC
Q 014331 221 AVRDDD 226 (426)
Q Consensus 221 a~~~~~ 226 (426)
+..+..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 987644
No 312
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=5.7e-14 Score=108.34 Aligned_cols=73 Identities=26% Similarity=0.541 Sum_probs=66.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+..+|||+|| |..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|++ +++..|+|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 3456789999999 7889999999999999999999985 5799999999999999996 5788899999999
Q ss_pred EEe
Q 014331 219 EYA 221 (426)
Q Consensus 219 ~~a 221 (426)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 313
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=5.2e-14 Score=116.17 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=67.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCE-EEEEecCHHHHHHHHHHcCCCCCCC--ceEEEEEeecC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNF-AFVQYEVQEDATRALDATNMSKLTD--RVISVEYAVRD 224 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~ 224 (426)
.-.|||+|| ++.+++++|.++|++||.|..|.|. +|| |||+|.+.++|++|++.|||..|.| +.|.|+|++..
T Consensus 28 VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 346779999 7999999999999999999999885 467 9999999999999999999999998 99999999875
No 314
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.8e-14 Score=110.00 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=69.0
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEE-EEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISV-RIR----RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v-~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
.....+|||+|| |..+++++|+++|.+||.|..| .|+ .+.|||+|.+.++|.+|+..|||..|.|+.|.|+++.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 12 RQRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345689999999 7899999999999999999999 464 3459999999999999999999999999999999998
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 315
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=5.1e-14 Score=116.30 Aligned_cols=72 Identities=24% Similarity=0.465 Sum_probs=67.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
..+|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+ .|||..|+|+.|.|++++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 7899999999999999999999985 579999999999999999 899999999999999998
Q ss_pred cC
Q 014331 223 RD 224 (426)
Q Consensus 223 ~~ 224 (426)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 316
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=3.4e-14 Score=111.79 Aligned_cols=78 Identities=21% Similarity=0.407 Sum_probs=69.8
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE---ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI---RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
...+..+|||+|| |..+++++|+++|.+||.|..+.. .+|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456789999999 789999999999999999887722 378999999999999999999999999999999999987
Q ss_pred CC
Q 014331 224 DD 225 (426)
Q Consensus 224 ~~ 225 (426)
+.
T Consensus 91 ~~ 92 (96)
T 1fjc_A 91 KG 92 (96)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 317
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=121.79 Aligned_cols=73 Identities=16% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCC--ceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
...+|||+|| ++.+++++|+++|.+|| .|..|.|. +|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 79999999999999999 99999984 5799999999999999999999999999999999
Q ss_pred Eeec
Q 014331 220 YAVR 223 (426)
Q Consensus 220 ~a~~ 223 (426)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9975
No 318
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.1e-14 Score=111.01 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=67.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
......+|||+|| |+.+++++|+++|.+||.| .|.|+ +|||||+|.+.++|++|| .+|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3456789999999 8999999999999999955 88874 679999999999999999 479999999999999
Q ss_pred EeecCC
Q 014331 220 YAVRDD 225 (426)
Q Consensus 220 ~a~~~~ 225 (426)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987653
No 319
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=1.2e-14 Score=114.08 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=65.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
..+..+|||+|| |..+++++|+++|.+||.|..+.+. +|||||+|.+.++|++|++.|||..|.|+.|.|+
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345689999999 7899999999999999998765553 5899999999999999999999999999999999
Q ss_pred Eeec
Q 014331 220 YAVR 223 (426)
Q Consensus 220 ~a~~ 223 (426)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 320
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=111.52 Aligned_cols=72 Identities=24% Similarity=0.419 Sum_probs=66.0
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999 7899999999999999999999985 57999999999999999999999999999987765
Q ss_pred e
Q 014331 221 A 221 (426)
Q Consensus 221 a 221 (426)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 321
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.6e-14 Score=116.22 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=68.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
..++|||+|| +..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++|+ .|||..|.|+.|.|.++
T Consensus 24 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4579999999 7899999999999999999999995 579999999999999999 99999999999999999
Q ss_pred ecC
Q 014331 222 VRD 224 (426)
Q Consensus 222 ~~~ 224 (426)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 864
No 322
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.4e-14 Score=112.61 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=67.9
Q ss_pred cCCCccEEEcCCCCCC-----------CHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcChHhHHHHHHhcCCceecC
Q 014331 52 VAMMRPIFCGNFEYDA-----------RQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGR 116 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~~-----------te~~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~~~A~~Al~~lng~~~~~ 116 (426)
....++|+|.||.... ++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|||..|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-- 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF-- 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE--
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE--
Confidence 3567899999994433 268999999999999999884 89999999999999999999999999
Q ss_pred CCcEEEEEEeeccC
Q 014331 117 KGRRLRVEWTKHER 130 (426)
Q Consensus 117 ~g~~i~V~~a~~~~ 130 (426)
.|+.|.|.|+....
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 89999999997654
No 323
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-13 Score=111.25 Aligned_cols=78 Identities=21% Similarity=0.425 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCC-------
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKL------- 211 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~------- 211 (426)
.......+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+..|||..|
T Consensus 20 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 33456789999999 7889999999999999999999995 47999999999999999999999999
Q ss_pred -CCceEEEEEeecC
Q 014331 212 -TDRVISVEYAVRD 224 (426)
Q Consensus 212 -~g~~l~v~~a~~~ 224 (426)
.++.|.|.|+.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999753
No 324
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=113.68 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=66.1
Q ss_pred CCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 146 TNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
......++|||+|| +..+++++|+++|++|| |..|.|. +|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 14 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ------CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34566789999999 78899999999999999 9999984 579999999999999999 899999999999
Q ss_pred EEEEeecC
Q 014331 217 SVEYAVRD 224 (426)
Q Consensus 217 ~v~~a~~~ 224 (426)
.|+++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999764
No 325
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=8.2e-14 Score=117.43 Aligned_cols=76 Identities=34% Similarity=0.566 Sum_probs=69.2
Q ss_pred CCCCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 145 STNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
.....+..+|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 57 ~~~~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344567899999999 7889999999999999999999984 6799999999999999999999999999999
Q ss_pred EEEEe
Q 014331 217 SVEYA 221 (426)
Q Consensus 217 ~v~~a 221 (426)
.|++|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 326
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=4.2e-14 Score=109.43 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=68.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
...+|||+|| |..+++++|+++|.+| .|..|.+. +|||||+|.+.++|++|++.|||..+.|+.|.|+++..+
T Consensus 4 ~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4678999999 7899999999999999 99998884 799999999999999999999999999999999999764
No 327
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=6.4e-14 Score=120.01 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=67.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCC--ceEEEEEeecC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTD--RVISVEYAVRD 224 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~ 224 (426)
..+|||+|| ++.+++++|+++|++||+|..|.|. ++||||+|.+.++|++|++.|||..|.| +.|.|+|++..
T Consensus 46 vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 457899999 7999999999999999999999994 4699999999999999999999999965 99999999875
No 328
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=114.98 Aligned_cols=69 Identities=23% Similarity=0.424 Sum_probs=59.4
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-----------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-----------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRL 121 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-----------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i 121 (426)
...++|||+|||+.+|+++|+++|++||+|. +.+. +|||||+|.+.++|++||+.|++ + +|+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~--~G~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E--DGKLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E--TTEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c--CCcEE
Confidence 4578999999999999999999999999999 6651 68999999999999999999943 4 67777
Q ss_pred EEEEe
Q 014331 122 RVEWT 126 (426)
Q Consensus 122 ~V~~a 126 (426)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 76654
No 329
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=3.2e-14 Score=119.17 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCc---eEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGK---IISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~---v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
......+|||+|| |+.+++++|+++|++||. |..|.|+ +|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999 899999999999999999 7788874 6799999999999999999 99999999999
Q ss_pred EEEEeecC
Q 014331 217 SVEYAVRD 224 (426)
Q Consensus 217 ~v~~a~~~ 224 (426)
.|.++...
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998653
No 330
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=5.3e-14 Score=125.41 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=65.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..++|||+|||..+|+++|+++|+.||+|..|.|. +|||||+|.+.++|++||+.++ ..| +|+.|.|.|+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~~ 184 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILFK 184 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEET
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEEh
Confidence 35899999999999999999999999999999984 7999999999999999996654 578 8999999998
Q ss_pred ecc
Q 014331 127 KHE 129 (426)
Q Consensus 127 ~~~ 129 (426)
...
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 654
No 331
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.48 E-value=2.7e-14 Score=106.86 Aligned_cols=67 Identities=21% Similarity=0.489 Sum_probs=62.5
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
+|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|++|++ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999 7899999999999999999999884 4799999999999999997 9999999999999875
No 332
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=111.65 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=66.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
.....++|||+|| +..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..+ +..|+|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 3456789999999 7899999999999999999999994 579999999999999999986 58999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.++....
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998753
No 333
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.7e-14 Score=121.36 Aligned_cols=117 Identities=14% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHH
Q 014331 89 SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRD 168 (426)
Q Consensus 89 ~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~ 168 (426)
+++||.+|.-++.+..|+..+..+ + .|...--.... ...........+|||+|| |+.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~--gg~~~g~~~g~--------------~~~~~~~~~~~~lfV~nL-p~~~te~d 62 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-T--GGQQMGRGSGD--------------SEFTVQSTTGHCVHMRGL-PYKATEND 62 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSC-CTTCCHHH
T ss_pred CCcccccccCccccchhcccchhc-c--CCCCCCCCCCC--------------cccCCCCCCCCEEEEeCC-CCCCCHHH
Confidence 368899998888877777655443 2 12211100000 011223345679999999 89999999
Q ss_pred HHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 169 LERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 169 L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
|+++|++|| |+.|.|+ +|||||+|.+.++|++|| .+|+..|+|+.|.|.++....
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 999999999 6688884 689999999999999999 799999999999999987754
No 334
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.2e-14 Score=113.35 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCce-EEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKI-ISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v-~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
...+..+|||+|| |+.+++++|+++|..||.| ..|.|+ +|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 3456789999999 8999999999999999999 777773 78999999999999999987 999999999999
Q ss_pred EEeecCC
Q 014331 219 EYAVRDD 225 (426)
Q Consensus 219 ~~a~~~~ 225 (426)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998753
No 335
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=3.8e-14 Score=118.34 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=69.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE--EEEe--------cCEEEEEecCHHHHHHHHHHcCCC----CCC
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--VRIR--------RNFAFVQYEVQEDATRALDATNMS----KLT 212 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~--v~i~--------~g~afV~f~~~~~A~~A~~~l~g~----~~~ 212 (426)
...+..+|||+|| ++.+++++|+++|.+||.|.. |.|+ +|||||+|.+. +|.+|+..|||. .|+
T Consensus 19 ~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 3466789999999 789999999999999999966 7773 68999999999 999999999999 999
Q ss_pred CceEEEEEeecC
Q 014331 213 DRVISVEYAVRD 224 (426)
Q Consensus 213 g~~l~v~~a~~~ 224 (426)
|+.|.|+++...
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999999875
No 336
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.4e-13 Score=113.16 Aligned_cols=76 Identities=30% Similarity=0.462 Sum_probs=69.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
...+..+|||+|| .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 35 ~~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3456789999997 48899999999999999999996 799999999999999999999999999999999999875
Q ss_pred C
Q 014331 225 D 225 (426)
Q Consensus 225 ~ 225 (426)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 337
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=7e-14 Score=114.51 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=69.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCc---eEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGK---IISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~---v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
......+|||+|| |+.+++++|+++|..||. |..|.|. +|||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 13 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999 899999999999999998 8888884 6799999999999999999 99999999999
Q ss_pred EEEEeecC
Q 014331 217 SVEYAVRD 224 (426)
Q Consensus 217 ~v~~a~~~ 224 (426)
.|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998754
No 338
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-14 Score=117.12 Aligned_cols=76 Identities=14% Similarity=0.289 Sum_probs=67.3
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE-EEE-------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
......+|||+|| |+.+++++|+++|..||.|.. +.+ .+|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 21 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 21 PHEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3456689999999 899999999999999999866 333 26899999999999999999 9999999999999
Q ss_pred EEeecC
Q 014331 219 EYAVRD 224 (426)
Q Consensus 219 ~~a~~~ 224 (426)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 999764
No 339
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.2e-14 Score=111.41 Aligned_cols=72 Identities=21% Similarity=0.473 Sum_probs=64.8
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
++|||+|| +..+++++|+++|++||.|..|.+. +|||||+|.+.+ |.+|+..|||..++|+.|.|++|..
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999 7899999999999999999999995 579999999999 9999999999999999999999987
Q ss_pred CC
Q 014331 224 DD 225 (426)
Q Consensus 224 ~~ 225 (426)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 340
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=5.2e-14 Score=105.81 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
++|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|++|+..++ ..++|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 7899999999999999999999884 5799999999999999999999 9999999999987
No 341
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=4.1e-14 Score=112.43 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=66.7
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEE-------ecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRI-------RRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
..+..+|||+|| +..+++++|+++|.+||.|..+.+ .+|||||+|.+.++|++|++ |||..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999 789999999999999997755211 37899999999999999998 999999999999999
Q ss_pred eecCC
Q 014331 221 AVRDD 225 (426)
Q Consensus 221 a~~~~ 225 (426)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98754
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=2e-13 Score=119.96 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=71.1
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
...+.++|||+|| +..+++++|+++|.+||.|+.|.|. +|||||+|.+.++|++|++.|||..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999 7899999999999999999999995 5899999999999999999999999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
||...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99764
No 343
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=7e-15 Score=120.07 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=70.8
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE--------EEEe--------cCEEEEEecCHHHHHHHHHHcCCCCC
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRIR--------RNFAFVQYEVQEDATRALDATNMSKL 211 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 211 (426)
..+..+|||+|| |..+++++|+++|.+||.|.. |.|+ +|||||+|.+.++|++|+..|||..|
T Consensus 4 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 345789999999 789999999999999999988 6663 57999999999999999999999999
Q ss_pred CCceEEEEEeecCCCC
Q 014331 212 TDRVISVEYAVRDDDD 227 (426)
Q Consensus 212 ~g~~l~v~~a~~~~~~ 227 (426)
.|+.|.|.++..+...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876443
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=2.5e-13 Score=105.29 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=60.2
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCC--CCceEEEEEe
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKL--TDRVISVEYA 221 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~~a 221 (426)
...+..+|||+|| |+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|++ |++..+ .|+.|.|.+|
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3566789999999 8999999999999999999999996 7999999999999984 455554 5999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
..+.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8653
No 345
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.45 E-value=1.1e-13 Score=126.78 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhccCC--ceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEE
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEPYG--KIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 219 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 219 (426)
...+|||+|| ++.+++++|+++|.+|| .|+.|.|+ +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4678999999 79999999999999999 99999984 5799999999999999999999999999999999
Q ss_pred EeecC
Q 014331 220 YAVRD 224 (426)
Q Consensus 220 ~a~~~ 224 (426)
++...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98753
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=116.63 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEE--------EEEe-----cCEEEEEecCHHHHHHHHHHcCCCCCCCc
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIIS--------VRIR-----RNFAFVQYEVQEDATRALDATNMSKLTDR 214 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~--------v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 214 (426)
..+..+|||+|| +..+++++|+++|.+||.|.. +.+. +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 42 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 456789999999 789999999999999998765 3332 68999999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 014331 215 VISVEYAVRDD 225 (426)
Q Consensus 215 ~l~v~~a~~~~ 225 (426)
.|.|.+|+...
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.44 E-value=2e-13 Score=105.16 Aligned_cols=70 Identities=21% Similarity=0.487 Sum_probs=65.2
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccC----C-------ceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCce
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPY----G-------KIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRV 215 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~----G-------~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 215 (426)
.+..+|||+|| |..+++++|+++|.+| | .|..+.+. +|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 4 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 45689999999 7899999999999999 8 99999996 799999999999999999 99999999999
Q ss_pred EEEEE
Q 014331 216 ISVEY 220 (426)
Q Consensus 216 l~v~~ 220 (426)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99873
No 348
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=109.97 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=66.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
....+|||+|| |+.+++++|+++|+.| .|..|.|+ +|||||+|.+.++|++|| .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 33579999999 8999999999999999 89999984 689999999999999999 69999999999999988
Q ss_pred ecC
Q 014331 222 VRD 224 (426)
Q Consensus 222 ~~~ 224 (426)
...
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 349
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=111.26 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCc---eEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGK---IISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~---v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
......+|||+|| |+.+++++|+++|..||. |..|.|. +|||||+|.+.++|++||. ||+..|+|+.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999 899999999999999998 8888884 6799999999999999999 99999999999
Q ss_pred EEEEeecC
Q 014331 217 SVEYAVRD 224 (426)
Q Consensus 217 ~v~~a~~~ 224 (426)
.|.++...
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998764
No 350
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=2.7e-13 Score=130.46 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=66.4
Q ss_pred cCCCccEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHhHHHHHHhcCCceec-CCCc--EEEEE
Q 014331 52 VAMMRPIFCGN--FEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERDAEDAIRGLDRTEFG-RKGR--RLRVE 124 (426)
Q Consensus 52 ~~~~~~l~V~n--Lp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~A~~Al~~lng~~~~-~~g~--~i~V~ 124 (426)
..++.+||||| |+..+|+++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||..+. ..|+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 35678999999 5789999999999999999999998 5899999999999999999999999872 2355 57777
Q ss_pred Eee
Q 014331 125 WTK 127 (426)
Q Consensus 125 ~a~ 127 (426)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 774
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=106.24 Aligned_cols=75 Identities=21% Similarity=0.292 Sum_probs=63.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
.+.++|||+|| |..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+.. ...+.|..|.|.++..+.
T Consensus 3 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 45789999999 7899999999999999999999996 78999999999999764321 344589999999988754
Q ss_pred C
Q 014331 226 D 226 (426)
Q Consensus 226 ~ 226 (426)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.3e-12 Score=105.84 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=68.8
Q ss_pred CCCCCCcEEEEecCCCCCCC-----------HHHHHHhhccCCceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCC
Q 014331 146 TNTRPSKTLFVINFDPYHTR-----------TRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSK 210 (426)
Q Consensus 146 ~~~~~~~~l~v~nl~p~~~~-----------~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~ 210 (426)
....++.+|+|.|| ..... +++|+++|.+||.|..|.|. +|||||+|.+.++|++|+..|||..
T Consensus 10 ~~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 10 SRMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34567899999999 33321 57999999999999999875 7999999999999999999999999
Q ss_pred CCCceEEEEEeecCC
Q 014331 211 LTDRVISVEYAVRDD 225 (426)
Q Consensus 211 ~~g~~l~v~~a~~~~ 225 (426)
|+|+.|.|.++....
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999997753
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=4.7e-13 Score=122.25 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=68.9
Q ss_pred CCCCcEEEEecCCCCCC---------CHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCC-----
Q 014331 148 TRPSKTLFVINFDPYHT---------RTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKL----- 211 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~---------~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~----- 211 (426)
.....+|||+|| +..+ ++++|+++|++||+|..|.|. +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 556889999999 6666 699999999999999999995 89999999999999999999999999
Q ss_pred -------CCceEEEEEeecCC
Q 014331 212 -------TDRVISVEYAVRDD 225 (426)
Q Consensus 212 -------~g~~l~v~~a~~~~ 225 (426)
.|+.|.|.||....
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998753
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=6.5e-13 Score=106.19 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=64.6
Q ss_pred CCccEEEcCC--CCCC--------CHHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcChHhHHHHHHhcCCce
Q 014331 54 MMRPIFCGNF--EYDA--------RQSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRTE 113 (426)
Q Consensus 54 ~~~~l~V~nL--p~~~--------te~~L~~~F~~~G~V~~v~i~----------~g~aFV~F~~~~~A~~Al~~lng~~ 113 (426)
++++|.|.|+ +..+ ++++|+++|++||+|.+|.|. +|||||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899998 3333 347999999999999999993 5899999999999999999999999
Q ss_pred ecCCCcEEEEEEeecc
Q 014331 114 FGRKGRRLRVEWTKHE 129 (426)
Q Consensus 114 ~~~~g~~i~V~~a~~~ 129 (426)
| .|+.|.|.|+...
T Consensus 84 f--~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 F--ANRVVVTKYCDPD 97 (105)
T ss_dssp E--TTEECEEEEECHH
T ss_pred e--CCCEEEEEEeCHH
Confidence 9 8999999998654
No 355
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=1.3e-13 Score=103.12 Aligned_cols=67 Identities=16% Similarity=0.388 Sum_probs=62.1
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
+|||+|| |..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++. ++..+.|+.|.|.+|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999 7889999999999999999999884 57999999999999999984 899999999999875
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=1.1e-12 Score=104.72 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=66.2
Q ss_pred CCCCcEEEEecCCC----CCCCHHHHHHhhccCCceEEEEEe---------cCEEEEEecCHHHHHHHHHHcCCCCCCCc
Q 014331 148 TRPSKTLFVINFDP----YHTRTRDLERHFEPYGKIISVRIR---------RNFAFVQYEVQEDATRALDATNMSKLTDR 214 (426)
Q Consensus 148 ~~~~~~l~v~nl~p----~~~~~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 214 (426)
..++.+|+|.||-. ...++++|+++|++||.|..|.|+ +|+|||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999931 123589999999999999999985 47999999999999999999999999999
Q ss_pred eEEEEEeec
Q 014331 215 VISVEYAVR 223 (426)
Q Consensus 215 ~l~v~~a~~ 223 (426)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999875
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=3.2e-13 Score=107.44 Aligned_cols=74 Identities=18% Similarity=0.382 Sum_probs=67.9
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEe
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYA 221 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 221 (426)
...++|||+|| +..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|++|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34689999999 7899999999999999999999995 4899999999999999998 999999999999999
Q ss_pred ecCC
Q 014331 222 VRDD 225 (426)
Q Consensus 222 ~~~~ 225 (426)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8754
No 358
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=101.57 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEE---eCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 65 YDARQSDLERLFRRYGKVDRVDM---KSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 65 ~~~te~~L~~~F~~~G~V~~v~i---~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
..+|+++|+++|++||+|.+|.| ++|||||+|.+.++|+.||+.+++ + .|+.|.|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--L--VDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--C--SSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--C--CCCeEEEEEccCCC
Confidence 56899999999999999999999 489999999999999999988655 4 69999999987654
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.2e-13 Score=110.38 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=65.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCce----EEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKI----ISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v----~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
....+|||+|| |+.+++++|+++|++||.| ..|.|+ +|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 45689999999 8999999999999999975 466663 68999999999999999986 99999999999
Q ss_pred EEEeecC
Q 014331 218 VEYAVRD 224 (426)
Q Consensus 218 v~~a~~~ 224 (426)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 360
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=1.4e-12 Score=107.55 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCCCcEEEEecCCCCCCCHHHHHHhhccCCceE--EEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 147 NTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII--SVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~--~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
......+|||+|| |+.+++++|+++|++| .|+ .|.|+ +|||||+|.+.++|++||+. ++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 3455789999999 8999999999999999 666 88884 68999999999999999984 77999999999
Q ss_pred EEEeec
Q 014331 218 VEYAVR 223 (426)
Q Consensus 218 v~~a~~ 223 (426)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998865
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=5.4e-12 Score=112.34 Aligned_cols=115 Identities=14% Similarity=0.305 Sum_probs=82.5
Q ss_pred ChHhHHHHHHhc--CCceecCCCcEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHhhcc
Q 014331 98 DERDAEDAIRGL--DRTEFGRKGRRLRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEP 175 (426)
Q Consensus 98 ~~~~A~~Al~~l--ng~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~p~~~~~~~L~~~F~~ 175 (426)
+.+.+..|+... ....+ .+..+.|....... .+.. ..........++|||+|| |..+++++|+++|++
T Consensus 63 d~~~I~~Al~~S~~~~lev--~ed~~~vrR~~~~p---~p~~----~~~~~~~~~~~~l~V~nL-p~~~t~~~L~~~F~~ 132 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEI--SEDKTKIRRSPSKP---LPEV----TDEYKNDVKNRSVYIKGF-PTDATLDDIKEWLED 132 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEE--CTTSSEEEECTTSC---CCCC----CHHHHHHHHHTEEEEECC-CTTCCHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEEE--ecccceEEecccCC---Cccc----chhhhhccccCEEEecCC-CCcCCHHHHHHHHhc
Confidence 567788888777 45555 34444443331100 0000 000001123579999999 788999999999999
Q ss_pred CCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 176 YGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 176 ~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
||.|..|.|+ +|||||+|.+.++|.+|+..++ ..|+|+.|.|.++..
T Consensus 133 ~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 133 KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp SCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 9999999985 6899999999999999998665 589999999999765
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=3.2e-13 Score=107.83 Aligned_cols=65 Identities=20% Similarity=0.476 Sum_probs=57.8
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcCCceecCCCcE
Q 014331 60 CGNFEYDARQSDLERLF------------RRYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR 120 (426)
Q Consensus 60 V~nLp~~~te~~L~~~F------------~~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~ 120 (426)
+.||+..+|+++|+++| ++||+|.+|.|. +|||||+|.+.++|++|++.|||..| .|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCEE
Confidence 56777777887777666 999999999994 79999999999999999999999999 8999
Q ss_pred EEEEEe
Q 014331 121 LRVEWT 126 (426)
Q Consensus 121 i~V~~a 126 (426)
|.|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=4e-12 Score=103.61 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=64.8
Q ss_pred CCccEEEcCCCC--CC---CHHHHHHHHhhcCCeeEEEEe------------CCEEEEEEcChHhHHHHHHhcCCceecC
Q 014331 54 MMRPIFCGNFEY--DA---RQSDLERLFRRYGKVDRVDMK------------SGFAFIYMDDERDAEDAIRGLDRTEFGR 116 (426)
Q Consensus 54 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~V~~v~i~------------~g~aFV~F~~~~~A~~Al~~lng~~~~~ 116 (426)
++++|+|.|+-. ++ .++||+++|++||+|.+|.|. +|||||+|.+.++|.+|++.|||..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 578999999842 22 378999999999999999983 28999999999999999999999999
Q ss_pred CCcEEEEEEeecc
Q 014331 117 KGRRLRVEWTKHE 129 (426)
Q Consensus 117 ~g~~i~V~~a~~~ 129 (426)
.|+.|.|.|+...
T Consensus 97 ~GR~i~v~~~~~~ 109 (118)
T 3ue2_A 97 AGRKVVAEVYDQE 109 (118)
T ss_dssp TTEECEEEEECHH
T ss_pred CCcEEEEEEcChH
Confidence 8999999998653
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=5.9e-12 Score=101.91 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCCccEEEcCCCCCC----------CHHHHHHHHhhcCCeeEEEEe----CCEEEEEEcChHhHHHHHHhcCCceecCCC
Q 014331 53 AMMRPIFCGNFEYDA----------RQSDLERLFRRYGKVDRVDMK----SGFAFIYMDDERDAEDAIRGLDRTEFGRKG 118 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~V~~v~i~----~g~aFV~F~~~~~A~~Al~~lng~~~~~~g 118 (426)
.++++|.|.|+=... .+++|+++|++||.|.+|.|. +|||||+|.+.++|.+|++.|||..| .|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f--~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF--AG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE--CC
Confidence 446778888883211 256899999999999999994 79999999999999999999999999 89
Q ss_pred cEEEEEEeecc
Q 014331 119 RRLRVEWTKHE 129 (426)
Q Consensus 119 ~~i~V~~a~~~ 129 (426)
+.|.|.|+...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998654
No 365
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=100.31 Aligned_cols=70 Identities=16% Similarity=0.339 Sum_probs=58.2
Q ss_pred CCCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe-----------cCEEEEEecCHHHHHHHHHHcCCCCCCCceE
Q 014331 148 TRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR-----------RNFAFVQYEVQEDATRALDATNMSKLTDRVI 216 (426)
Q Consensus 148 ~~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 216 (426)
....++|||+|| |..+++++|+++|++||.|. +.++ +|||||+|.+.++|++|++.|++ ++|+.|
T Consensus 5 ~~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 345789999999 79999999999999999999 6653 57999999999999999999843 556666
Q ss_pred EEEEe
Q 014331 217 SVEYA 221 (426)
Q Consensus 217 ~v~~a 221 (426)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 55543
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=1.2e-11 Score=98.83 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=64.9
Q ss_pred CCCcEEEEecC-CCCCC--------CHHHHHHhhccCCceEEEEEe----------cCEEEEEecCHHHHHHHHHHcCCC
Q 014331 149 RPSKTLFVINF-DPYHT--------RTRDLERHFEPYGKIISVRIR----------RNFAFVQYEVQEDATRALDATNMS 209 (426)
Q Consensus 149 ~~~~~l~v~nl-~p~~~--------~~~~L~~~F~~~G~v~~v~i~----------~g~afV~f~~~~~A~~A~~~l~g~ 209 (426)
.++++|.|.|+ ++... .+++|+++|++||.|..|.|+ +|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 56889999997 22222 237899999999999999995 489999999999999999999999
Q ss_pred CCCCceEEEEEeec
Q 014331 210 KLTDRVISVEYAVR 223 (426)
Q Consensus 210 ~~~g~~l~v~~a~~ 223 (426)
.|+|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999865
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=3e-11 Score=98.40 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=64.2
Q ss_pred CCcEEEEecCC-CC---CCCHHHHHHhhccCCceEEEEEe------------cCEEEEEecCHHHHHHHHHHcCCCCCCC
Q 014331 150 PSKTLFVINFD-PY---HTRTRDLERHFEPYGKIISVRIR------------RNFAFVQYEVQEDATRALDATNMSKLTD 213 (426)
Q Consensus 150 ~~~~l~v~nl~-p~---~~~~~~L~~~F~~~G~v~~v~i~------------~g~afV~f~~~~~A~~A~~~l~g~~~~g 213 (426)
++.+|+|.|+- +. ...++||+++|++||.|..|.|+ +|++||+|.+.++|.+|++.|||.+|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999982 11 12379999999999999999984 2799999999999999999999999999
Q ss_pred ceEEEEEeec
Q 014331 214 RVISVEYAVR 223 (426)
Q Consensus 214 ~~l~v~~a~~ 223 (426)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.8e-11 Score=92.37 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCCCHHHHHHhhccCCceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecCC
Q 014331 162 YHTRTRDLERHFEPYGKIISVRIR---RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDD 225 (426)
Q Consensus 162 ~~~~~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 225 (426)
..+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.+++ +.|+.|.|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 467899999999999999999995 78999999999999999998655 579999999998754
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=3.6e-11 Score=97.26 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCCCcEEEEecCCC-CC--------CCHHHHHHhhccCCceEEEEEe----cCEEEEEecCHHHHHHHHHHcCCCCCCCc
Q 014331 148 TRPSKTLFVINFDP-YH--------TRTRDLERHFEPYGKIISVRIR----RNFAFVQYEVQEDATRALDATNMSKLTDR 214 (426)
Q Consensus 148 ~~~~~~l~v~nl~p-~~--------~~~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 214 (426)
..++.+|.+.|+-. .. ..++||+++|++||.|..|.|. +|+|||+|.+.++|.+|++.|||.+|+|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45678899999821 11 0136789999999999999995 68999999999999999999999999999
Q ss_pred eEEEEEeec
Q 014331 215 VISVEYAVR 223 (426)
Q Consensus 215 ~l~v~~a~~ 223 (426)
.|.|.|+..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999865
No 370
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.6e-11 Score=99.71 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=61.5
Q ss_pred cEEEEecC----CCCCCCHHHHHHhhccCCceEEEEEe--------cCEEEEEecC----HHH----HHHHHH--HcCCC
Q 014331 152 KTLFVINF----DPYHTRTRDLERHFEPYGKIISVRIR--------RNFAFVQYEV----QED----ATRALD--ATNMS 209 (426)
Q Consensus 152 ~~l~v~nl----~p~~~~~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~----~~~----A~~A~~--~l~g~ 209 (426)
..|||+|| + +.+++++|+++|+.||+|..|.+. +|||||+|.+ +++ |.+|+. .|||.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 7 678899999999999999999983 7899999996 323 888988 78999
Q ss_pred CCCCceEEEEEeec
Q 014331 210 KLTDRVISVEYAVR 223 (426)
Q Consensus 210 ~~~g~~l~v~~a~~ 223 (426)
.|+|+.|.|.+...
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.3e-11 Score=115.90 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=65.7
Q ss_pred CCCCCcEEEEecCC-CCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCC---Cc--eEEE
Q 014331 147 NTRPSKTLFVINFD-PYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLT---DR--VISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~-p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~---g~--~l~v 218 (426)
...++.+|||+|+. ++.+++++|+++|++||+|..|.|+ +|||||+|.+.++|++|++.|||..+. |. .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 35778999999941 5789999999999999999999984 789999999999999999999999883 44 5777
Q ss_pred EEee
Q 014331 219 EYAV 222 (426)
Q Consensus 219 ~~a~ 222 (426)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 7764
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1e-10 Score=94.78 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=65.2
Q ss_pred cCCCccEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcC-hHhHHHHHHhcC--CceecCCCcEEEEEE
Q 014331 52 VAMMRPIFCGNFEYD-ARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDD-ERDAEDAIRGLD--RTEFGRKGRRLRVEW 125 (426)
Q Consensus 52 ~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~-~~~A~~Al~~ln--g~~~~~~g~~i~V~~ 125 (426)
....+.|||+||+.. ++.++|+++|+.||+|..|.|. ...|||.|.+ +.+|..|++.|| +..| +|..+.++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i--~g~~~~~ev 92 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL--RNKEVTWEV 92 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT--TSSSEEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE--eCcEEEEEE
Confidence 356789999999999 9999999999999999999996 4489999999 899999999996 5566 788888876
Q ss_pred eec
Q 014331 126 TKH 128 (426)
Q Consensus 126 a~~ 128 (426)
...
T Consensus 93 L~G 95 (121)
T 1owx_A 93 LEG 95 (121)
T ss_dssp CCH
T ss_pred CCC
Confidence 543
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=9.1e-11 Score=89.20 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=61.5
Q ss_pred CccEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFE----YDARQ----SDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp----~~~te----~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..||+|.-++ .++-. .+|.+.|.+||+|..|+|..+.+||+|.+.++|.+||+ |||..| .|+.|+|+++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v--~Gr~LkV~lk 83 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKEL--LNRTITIALK 83 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEE--TTEEEEEEEC
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEe--CCeEEEEEeC
Confidence 4577776665 23333 67999999999999999999999999999999999996 999999 7999999998
Q ss_pred ecc
Q 014331 127 KHE 129 (426)
Q Consensus 127 ~~~ 129 (426)
.+.
T Consensus 84 t~d 86 (91)
T 2dnr_A 84 SPS 86 (91)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.13 E-value=1.2e-11 Score=98.55 Aligned_cols=64 Identities=19% Similarity=0.340 Sum_probs=54.4
Q ss_pred ecCCCCCCCHHHHHHhh------------ccCCceEEEEEe-------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEE
Q 014331 157 INFDPYHTRTRDLERHF------------EPYGKIISVRIR-------RNFAFVQYEVQEDATRALDATNMSKLTDRVIS 217 (426)
Q Consensus 157 ~nl~p~~~~~~~L~~~F------------~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 217 (426)
.|| +..+++++|+++| ++||.|..|.|+ +|||||+|.+.++|++|+..|||..|+|+.|.
T Consensus 21 ~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 21 DGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred CCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 344 3445566555555 999999999995 68999999999999999999999999999999
Q ss_pred EEEe
Q 014331 218 VEYA 221 (426)
Q Consensus 218 v~~a 221 (426)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=87.10 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=64.7
Q ss_pred CCCCcEEEEecCCC---CCCCH----HHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 148 TRPSKTLFVINFDP---YHTRT----RDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 148 ~~~~~~l~v~nl~p---~~~~~----~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
.++..||+|..++. ...-+ .+|.+.|.+||+|..+++..+.+||+|.+.++|.+|++ |||..++|+.|+|.+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 46677888877631 12223 67899999999999999999999999999999999998 999999999999999
Q ss_pred eecC
Q 014331 221 AVRD 224 (426)
Q Consensus 221 a~~~ 224 (426)
+.++
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9763
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=8.8e-10 Score=89.34 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCCCCCCcEEEEecCCCCC-CCHHHHHHhhccCCceEEEEEecC--EEEEEecC-HHHHHHHHHHcC--CCCCCCceEEE
Q 014331 145 STNTRPSKTLFVINFDPYH-TRTRDLERHFEPYGKIISVRIRRN--FAFVQYEV-QEDATRALDATN--MSKLTDRVISV 218 (426)
Q Consensus 145 ~~~~~~~~~l~v~nl~p~~-~~~~~L~~~F~~~G~v~~v~i~~g--~afV~f~~-~~~A~~A~~~l~--g~~~~g~~l~v 218 (426)
.....++..|+|+|| +.. ++.++|+++|++||+|.+|.+..+ .|||.|.+ ..+|..|+..|| +..|.|..+++
T Consensus 12 ~~~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 12 SLEEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCSCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cccccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 345677889999999 566 999999999999999999999765 89999999 899999999994 78899999999
Q ss_pred EEeec
Q 014331 219 EYAVR 223 (426)
Q Consensus 219 ~~a~~ 223 (426)
+....
T Consensus 91 evL~G 95 (121)
T 1owx_A 91 EVLEG 95 (121)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 88553
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.3e-09 Score=83.23 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=61.3
Q ss_pred CCCccEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEE
Q 014331 53 AMMRPIFCGNFEYD-----ARQ----SDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRV 123 (426)
Q Consensus 53 ~~~~~l~V~nLp~~-----~te----~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V 123 (426)
.+..||+|..++.. +-. .+|.+.|.+||+|..|+|...-+||+|.+.++|.+||+ |||..| .|+.|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v--~Gr~L~V 89 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKV--KGRAVKI 89 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEE--TTEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeee--CCeEEEE
Confidence 34568999877643 222 57999999999999999998889999999999999996 999999 7999999
Q ss_pred EEee
Q 014331 124 EWTK 127 (426)
Q Consensus 124 ~~a~ 127 (426)
.+..
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=4e-09 Score=80.51 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=63.6
Q ss_pred CCCCCcEEEEecCCCC-----CCC---HHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEE
Q 014331 147 NTRPSKTLFVINFDPY-----HTR---TRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISV 218 (426)
Q Consensus 147 ~~~~~~~l~v~nl~p~-----~~~---~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 218 (426)
..++..||+|..+++. ... -.+|.+.|.+||+|..+++..+-+||+|.+.++|.+||+ |||..++|+.|+|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 4577889999987321 121 156899999999999999999999999999999999998 9999999999999
Q ss_pred EEee
Q 014331 219 EYAV 222 (426)
Q Consensus 219 ~~a~ 222 (426)
.+..
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8753
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=4e-08 Score=89.16 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=60.6
Q ss_pred CccEEEcCCC-----CCCCHHHHHHHHhhcCCeeEEEEe------------CCEEEEEEcChHhHHHHHHhcCCceecCC
Q 014331 55 MRPIFCGNFE-----YDARQSDLERLFRRYGKVDRVDMK------------SGFAFIYMDDERDAEDAIRGLDRTEFGRK 117 (426)
Q Consensus 55 ~~~l~V~nLp-----~~~te~~L~~~F~~~G~V~~v~i~------------~g~aFV~F~~~~~A~~Al~~lng~~~~~~ 117 (426)
...|.+.|+- ..-.+++|.+.|++||+|..|.|. +|++||+|.+.++|.+|++.|||..| .
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--A 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--C
Confidence 3445555552 234578999999999999999983 58999999999999999999999999 8
Q ss_pred CcEEEEEEeecc
Q 014331 118 GRRLRVEWTKHE 129 (426)
Q Consensus 118 g~~i~V~~a~~~ 129 (426)
|+.|.|.|+...
T Consensus 202 gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 GRKVVAEVYDQE 213 (222)
T ss_dssp SSBCEEEECCHH
T ss_pred CeEEEEEEcCHH
Confidence 999999998543
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.49 E-value=1.9e-07 Score=84.59 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=54.8
Q ss_pred CHHHHHHhhccCCceEEEEEe------------cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeec
Q 014331 165 RTRDLERHFEPYGKIISVRIR------------RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVR 223 (426)
Q Consensus 165 ~~~~L~~~F~~~G~v~~v~i~------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 223 (426)
.+++|.+.|.+||.|..|.|+ +|++||+|.+.++|.+|++.|||.+|+|+.|.|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 478999999999999999984 47999999999999999999999999999999999764
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.5e-07 Score=68.71 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRY-----GKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
+..++|-+-|||..++...|..|++.+ |.|..|.+- -+-|+|+|.+...|-+|.-+|||..| .|++|+|.-
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef--~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQF--QGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEE--TTEEEEEEC
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeee--cCeEEEecC
Confidence 347899999999999999999999999 999999984 67899999999999999999999999 799999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.8e-06 Score=64.81 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=63.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccC-----CceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEE
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPY-----GKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTDRVISVEY 220 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~-----G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 220 (426)
..+|-+-|| |..+++..|+.+++.| |.|+.|.+. -+-|+|+|.+...|.+|.-.|+|.+|.|+.|.|.-
T Consensus 21 ~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 578899999 8999999999999999 999999985 56899999999999999999999999999999863
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.9e-05 Score=61.02 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=58.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEe
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRR-----YGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWT 126 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~-----~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a 126 (426)
..+|.|.|||+.+.++.|.-+|+. =|+|..|....+-|+|+|.+.+.|+..| +-....| ++..|.|...
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL-~k~~H~L--~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVL-AQADHEL--HGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHH-TCSCCBS--SSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHh-cCCccee--cCeEEEEEcC
Confidence 568999999999999999999987 2799999997799999999999999998 4445566 6888888654
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=2.4e-05 Score=60.72 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=62.6
Q ss_pred CccEEEcCCCCCC-C----HHHHHHHHhhcCCeeEEEEeC--CEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 55 MRPIFCGNFEYDA-R----QSDLERLFRRYGKVDRVDMKS--GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 55 ~~~l~V~nLp~~~-t----e~~L~~~F~~~G~V~~v~i~~--g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
.++|+|+||+..+ + .+.+++||..|+++....+-+ .=..|.|.++++|.+|-..|++..| .|..|+|.|+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f--~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEF--LGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE--TTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhcccee--cCceeEEEecC
Confidence 5789999998755 2 367899999999998877743 3578999999999999999999999 89999999997
Q ss_pred cc
Q 014331 128 HE 129 (426)
Q Consensus 128 ~~ 129 (426)
..
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00015 Score=57.89 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
...-|.|-++|+.. ...|...|++||+|++.... ..+..|.|.+..+|++|| ..||..|+ .+-.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~-g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFG-ESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEET-TTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEec-CCEEEEEEECC
Confidence 35678899999885 67888999999999999984 679999999999999999 88999993 23556666653
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.69 E-value=9.2e-05 Score=56.41 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=48.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~ln 110 (426)
...++| ++|+.+...||.++|+.||.|.--.|.-..|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 455666 9999999999999999999777666778999999999999999998774
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.58 E-value=9.1e-05 Score=56.62 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=46.5
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcC
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~ln 110 (426)
..++| ++|+.+...||.++|+.||.|.--.|.-..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 34666 9999999999999999999655555578899999999999999998775
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=6.8e-05 Score=58.14 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=62.0
Q ss_pred CcEEEEecCCCCCCC----HHHHHHhhccCCceEEEEEecC--EEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 151 SKTLFVINFDPYHTR----TRDLERHFEPYGKIISVRIRRN--FAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~----~~~L~~~F~~~G~v~~v~i~~g--~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
.++|+|.||++..-. .+.++++|..|+++....+.+- -..|.|.+.++|.+|-..||+..|.|+.|+|-++...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 468999999543222 2577999999998888877654 5789999999999999999999999999999999843
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.50 E-value=0.00031 Score=53.50 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=52.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe----------CCEEEEEEcChHhHHHHHHhcCCceec
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK----------SGFAFIYMDDERDAEDAIRGLDRTEFG 115 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~----------~g~aFV~F~~~~~A~~Al~~lng~~~~ 115 (426)
++|.|.+||+.+||+++.+.+..+.++...... -.-|||.|.+.+++....+.++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999998877655542 247999999999999999999999884
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.0036 Score=48.30 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHhhcc-----CCceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEeecC
Q 014331 150 PSKTLFVINFDPYHTRTRDLERHFEP-----YGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRD 224 (426)
Q Consensus 150 ~~~~l~v~nl~p~~~~~~~L~~~F~~-----~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 224 (426)
...+|.|.|| |..+.++.|.-+|+. -|+|..|....+-|+|+|.+...|+..++. ....|.|..|.|......
T Consensus 7 ~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~ 84 (104)
T 2dhx_A 7 GGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPR 84 (104)
T ss_dssp CCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCC
T ss_pred CccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCC
Confidence 4579999999 678889999999987 259999999889999999999999999863 367888999999765543
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.0023 Score=50.94 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=57.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--cCEEEEEecCHHHHHHHHHHcCCCCCCC-ceEEEEEe
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--RNFAFVQYEVQEDATRALDATNMSKLTD-RVISVEYA 221 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a 221 (426)
....-|.|.++ +... ...|..+|++||+|+....+ .++..|.|.+..+|++||. .||..|+| ..|-|...
T Consensus 22 ~~~~wVtVFGF-p~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGF-PQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECC-CGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECC-CHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34567899999 4444 78899999999999999985 4699999999999999997 59999985 66666653
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.90 E-value=0.0063 Score=46.33 Aligned_cols=55 Identities=29% Similarity=0.430 Sum_probs=46.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~ 207 (426)
...++| ++ |......||.++|+.||.|.--+|.-..|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 345555 99 67777999999999999777777788999999999999999998763
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.78 E-value=0.0024 Score=48.88 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=52.3
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-----e-----CCEEEEEEcChHhHHHHHHhcCCceec-CCCc--EE
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDM-----K-----SGFAFIYMDDERDAEDAIRGLDRTEFG-RKGR--RL 121 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i-----~-----~g~aFV~F~~~~~A~~Al~~lng~~~~-~~g~--~i 121 (426)
.-+|.|..||+.+||+++.+.+..+-++..... + -.-|||.|.+.+++....+.++|..|. .+|. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999998877766544322211 1 246999999999999999999998884 1222 33
Q ss_pred EEEEee
Q 014331 122 RVEWTK 127 (426)
Q Consensus 122 ~V~~a~ 127 (426)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 456653
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.75 E-value=0.0017 Score=52.43 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=53.9
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEE---------------------eCCEEEEEEcChHhHHHHHHhcCCc
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDR-VDM---------------------KSGFAFIYMDDERDAEDAIRGLDRT 112 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~-v~i---------------------~~g~aFV~F~~~~~A~~Al~~lng~ 112 (426)
..-|.|-++|+.. ...|.+.|++||.|++ +.+ -.+...|.|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 3457788886654 5667789999999977 211 1467799999999999999 99999
Q ss_pred eecCCCcEEEEEEee
Q 014331 113 EFGRKGRRLRVEWTK 127 (426)
Q Consensus 113 ~~~~~g~~i~V~~a~ 127 (426)
.| .|..|-|.+..
T Consensus 85 ii--~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VF--NGVLLGVIPYT 97 (132)
T ss_dssp EE--TTEECEEEECC
T ss_pred Ee--CcEEEEEEECC
Confidence 99 78877787664
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.45 E-value=0.0038 Score=47.69 Aligned_cols=53 Identities=30% Similarity=0.439 Sum_probs=45.2
Q ss_pred EEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcC
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATN 207 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~ 207 (426)
.++| ++ |......||.++|+.||.|.=-+|.-..|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~F-P~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-EC-CTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eC-ChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 4555 89 67777999999999999776667778899999999999999999764
No 396
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.86 E-value=0.026 Score=42.77 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=56.0
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec----------CEEEEEecCHHHHHHHHHHcCCCCCCCc-----eE
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR----------NFAFVQYEVQEDATRALDATNMSKLTDR-----VI 216 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~----------g~afV~f~~~~~A~~A~~~l~g~~~~g~-----~l 216 (426)
.+|.|.+| |-.++++++.+.+..+..+....... .-|||.|.+.+++..-.+.++|..|.+. .-
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47899999 66777999999999998877766643 2799999999999999999999887532 23
Q ss_pred EEEEee
Q 014331 217 SVEYAV 222 (426)
Q Consensus 217 ~v~~a~ 222 (426)
.|++|.
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 566654
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.84 E-value=0.0041 Score=61.71 Aligned_cols=59 Identities=7% Similarity=0.111 Sum_probs=43.9
Q ss_pred CCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCcee
Q 014331 54 MMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRTEF 114 (426)
Q Consensus 54 ~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~~~ 114 (426)
..++|||. ++..+++.+|.++|.+||+|..+.+- ..||.|||.+.++|..++. ..+..+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~-~~~~p~ 113 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN-GTHTPX 113 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS-SCCCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh-ccCCCc
Confidence 36899996 89999999999999999999999983 4599999999999997773 334444
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.75 E-value=0.011 Score=47.73 Aligned_cols=69 Identities=16% Similarity=0.311 Sum_probs=54.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEE-EEE---------------------ecCEEEEEecCHHHHHHHHHHcCC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIIS-VRI---------------------RRNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~-v~i---------------------~~g~afV~f~~~~~A~~A~~~l~g 208 (426)
..-|.|.++ |... ...+.++|++||.|+. +.+ ..++..|+|.+..+|.+||. .||
T Consensus 7 e~~VtVFGF-p~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGY-PETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECC-CGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEec-CHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456888889 5555 7788899999999977 211 24588999999999999997 699
Q ss_pred CCCCCceEEEEEee
Q 014331 209 SKLTDRVISVEYAV 222 (426)
Q Consensus 209 ~~~~g~~l~v~~a~ 222 (426)
..|.|..|-|..-.
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988887643
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.76 E-value=0.13 Score=39.30 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=53.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEec----------CEEEEEecCHHHHHHHHHHcCCCCCCCc-----e
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRR----------NFAFVQYEVQEDATRALDATNMSKLTDR-----V 215 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~----------g~afV~f~~~~~A~~A~~~l~g~~~~g~-----~ 215 (426)
+-+|.|..| |-.+||+++.+.+...-++....... .-|||.|.+.+++..-.+.++|..|-+. .
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 457999999 56677999998888766654333322 3699999999999999999999877532 3
Q ss_pred EEEEEee
Q 014331 216 ISVEYAV 222 (426)
Q Consensus 216 l~v~~a~ 222 (426)
-.|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566664
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.35 E-value=0.14 Score=51.54 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=48.7
Q ss_pred CccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCC
Q 014331 55 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDR 111 (426)
Q Consensus 55 ~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng 111 (426)
...++|+ ++..+...+|.++|+.||.|.-..|....|||.|.+.+.|..++.+++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 4566676 9999999999999999998766667788999999999999999998864
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.74 E-value=0.08 Score=52.44 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=38.9
Q ss_pred cEEEEecCCCCCCCHHHHHHhhccCCceEEEEEe--c-CEEEEEecCHHHHHHHHHH
Q 014331 152 KTLFVINFDPYHTRTRDLERHFEPYGKIISVRIR--R-NFAFVQYEVQEDATRALDA 205 (426)
Q Consensus 152 ~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~--~-g~afV~f~~~~~A~~A~~~ 205 (426)
..|+|. . +..+++.+|.+.|++||.|..+.+- + .||.|||.+.++++.++..
T Consensus 54 rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 679997 6 6778899999999999999999885 3 3999999999998877643
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=89.21 E-value=3.9 Score=30.21 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=56.1
Q ss_pred CCCccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 53 AMMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 53 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
...+-|-|-|||..+-..++.-.....|---.|...-|.|.|.|.+.++...||..|-+. ....|.|+.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkllnh----nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNH----NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHEET----TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHHhc----CCCEEEEEE
Confidence 456778899999999998888777888887888889999999999999999999876332 355666654
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=85.93 E-value=5.9 Score=29.24 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHc
Q 014331 149 RPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDAT 206 (426)
Q Consensus 149 ~~~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l 206 (426)
..++-|.|.|+ |..+-..++.-.....|---.|....|.|+|.|.+.++..-|++.|
T Consensus 10 kqnclikiini-pqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINI-PQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECC-CTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEec-CCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHH
Confidence 34567889999 7777788887777888888899999999999999999999998876
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=85.72 E-value=1.6 Score=31.26 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=44.3
Q ss_pred EEEEecCCCCCCCHHHHHHhhccC-C----ceEEEEEecCEEEEEecCHHHHHHHHHHcCCCCCCCceEEEEEee
Q 014331 153 TLFVINFDPYHTRTRDLERHFEPY-G----KIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAV 222 (426)
Q Consensus 153 ~l~v~nl~p~~~~~~~L~~~F~~~-G----~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 222 (426)
+|+|..-....+...+|..++..- | .|-.|.+...|.||+.... .|..+++.|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 345432223445566666655533 3 5788899999999998764 4678888999999999999998764
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.61 E-value=2.4 Score=30.35 Aligned_cols=67 Identities=12% Similarity=0.258 Sum_probs=45.4
Q ss_pred cEEEcCCC--CCCCHHHHHHHHhhcCC-----eeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEee
Q 014331 57 PIFCGNFE--YDARQSDLERLFRRYGK-----VDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTK 127 (426)
Q Consensus 57 ~l~V~nLp--~~~te~~L~~~F~~~G~-----V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~ 127 (426)
+||| |+- ..++..+|..++..-+. |-.|.|...|.||+-... .|..+++.|++..+ +|+.+.|+.+.
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i--~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTV--KGKQLKVNKAN 75 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC-----CCCEEECC
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccC--cCceEEEEECC
Confidence 4566 332 35677788877775443 567888899999999655 57889999999998 89999988653
No 406
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.31 E-value=2.3 Score=42.71 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=46.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHhhccCCceEEEEEecCEEEEEecCHHHHHHHHHHcCC
Q 014331 151 SKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 151 ~~~l~v~nl~p~~~~~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g 208 (426)
...++|+ + +..+...+|.++|+.||.|.-.++....|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 3466666 7 566678999999999998776777788999999999999999998853
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=60.99 E-value=2 Score=35.51 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHhhccCCceEEEEEecCEEEEEec
Q 014331 166 TRDLERHFEPYGKIISVRIRRNFAFVQYE 194 (426)
Q Consensus 166 ~~~L~~~F~~~G~v~~v~i~~g~afV~f~ 194 (426)
++|+.++|...|.|+.+...+||+||+..
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeC
Confidence 35777899999999999999999999976
No 408
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=60.15 E-value=1.4 Score=36.43 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCeeEEEEeCCEEEEEEcC
Q 014331 69 QSDLERLFRRYGKVDRVDMKSGFAFIYMDD 98 (426)
Q Consensus 69 e~~L~~~F~~~G~V~~v~i~~g~aFV~F~~ 98 (426)
++|+.+||...|.|+-+...+||+||+..+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~~ 30 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMTA 30 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeCc
Confidence 357778899999999988899999999863
No 409
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.40 E-value=4.6 Score=27.96 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=17.7
Q ss_pred cCCeeEEEEeCCEEEEEEcCh
Q 014331 79 YGKVDRVDMKSGFAFIYMDDE 99 (426)
Q Consensus 79 ~G~V~~v~i~~g~aFV~F~~~ 99 (426)
.|+|+.|...++.|||.|+|.
T Consensus 27 lGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETTTTEEEEEETTT
T ss_pred EeEEEEEecCCcEEEEEEccC
Confidence 378888888899999999864
No 410
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=54.86 E-value=5 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=18.9
Q ss_pred cCCeeEEEEeCCEEEEEEcChH
Q 014331 79 YGKVDRVDMKSGFAFIYMDDER 100 (426)
Q Consensus 79 ~G~V~~v~i~~g~aFV~F~~~~ 100 (426)
.|+|..|...++.|||.|.|..
T Consensus 44 LGTI~kV~~~~e~ClV~F~D~S 65 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEEETTTTEEEEEETTSC
T ss_pred eEEEEEeccCCCEEEEEEcCCC
Confidence 4889999989999999998753
No 411
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=51.58 E-value=37 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=25.1
Q ss_pred eeEEEEe---CCEEEEEEcChHhHHHHHHhcCCc
Q 014331 82 VDRVDMK---SGFAFIYMDDERDAEDAIRGLDRT 112 (426)
Q Consensus 82 V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~ 112 (426)
|..|.++ .||.||++...+++..+|..+.|.
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5666664 899999999999988888777664
No 412
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.60 E-value=3.5 Score=28.15 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.7
Q ss_pred CCeeEEEEeCCEEEEEEcCh
Q 014331 80 GKVDRVDMKSGFAFIYMDDE 99 (426)
Q Consensus 80 G~V~~v~i~~g~aFV~F~~~ 99 (426)
|+|+.|...+..|||.|.|.
T Consensus 26 gtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEccC
Confidence 66666666789999999864
No 413
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=45.64 E-value=8.9 Score=26.65 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=16.9
Q ss_pred CCeeEEEEeCCEEEEEEcCh
Q 014331 80 GKVDRVDMKSGFAFIYMDDE 99 (426)
Q Consensus 80 G~V~~v~i~~g~aFV~F~~~ 99 (426)
|.|+.|....+.|+|.|.+-
T Consensus 32 gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEccCCcEEEEEEccC
Confidence 77888877899999999864
No 414
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=40.38 E-value=12 Score=25.20 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=17.9
Q ss_pred cCCeeEEEEeCCEEEEEEcChH
Q 014331 79 YGKVDRVDMKSGFAFIYMDDER 100 (426)
Q Consensus 79 ~G~V~~v~i~~g~aFV~F~~~~ 100 (426)
.|+|..|......|+|.|.+..
T Consensus 21 lGtI~~V~~~~~~clV~F~D~s 42 (58)
T 4hcz_A 21 LGTIKKVDSAREVCLVQFEDDS 42 (58)
T ss_dssp EEEEEEEETTTTEEEEEETTSC
T ss_pred eEEEEEEecCCCEEEEEEcCCC
Confidence 3788888888889999998753
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=40.11 E-value=59 Score=23.98 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=25.6
Q ss_pred ceEEEEEe---cCEEEEEecCHHHHHHHHHHcCC
Q 014331 178 KIISVRIR---RNFAFVQYEVQEDATRALDATNM 208 (426)
Q Consensus 178 ~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g 208 (426)
.|..+.++ .||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 47777775 79999999999999888876655
No 416
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.38 E-value=47 Score=27.83 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=31.9
Q ss_pred cEEEcCCCC-C--------CCHHHHHHHH--hhcCCeeEEEE-----eCCEEEEEEcChHh
Q 014331 57 PIFCGNFEY-D--------ARQSDLERLF--RRYGKVDRVDM-----KSGFAFIYMDDERD 101 (426)
Q Consensus 57 ~l~V~nLp~-~--------~te~~L~~~F--~~~G~V~~v~i-----~~g~aFV~F~~~~~ 101 (426)
++.|-|++. . ....+|.+.| ..|.++.-..+ ..|+|.|+|..--.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 466667776 1 3457899977 89988765444 46899999986544
No 417
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=34.98 E-value=81 Score=21.30 Aligned_cols=53 Identities=4% Similarity=-0.021 Sum_probs=39.8
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe--CCEEEEEEcChHhHHHHHHhc
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDMK--SGFAFIYMDDERDAEDAIRGL 109 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i~--~g~aFV~F~~~~~A~~Al~~l 109 (426)
.+|.|.++.=.--...|++.+.. ..|..+.+. .+.+.|+|.+.++...||+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 46888888777678889999998 888877774 577888888556666677543
No 418
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=31.76 E-value=62 Score=24.40 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeecc
Q 014331 62 NFEYDARQSDLERLFR-RYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHE 129 (426)
Q Consensus 62 nLp~~~te~~L~~~F~-~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~ 129 (426)
-++..+.-+||..... .||.-.++.....-+.|-..+.+|-++||+.|+-..- -+.|+|-+..++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss~---~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSIH---MKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCSS---CCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCCc---ccceEEEEecCC
Confidence 4577888888876555 6898777777777788999999999999998876533 455566555444
No 419
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=27.48 E-value=1.2e+02 Score=19.76 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=33.4
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEcChHh
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMDDERD 101 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~~~~~ 101 (426)
.++.|.++.-..-...|+..+.....|..+.+ ..+-+.|.|....+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~ 51 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT 51 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC
Confidence 35777777666567888899998877877666 47788899854333
No 420
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.39 E-value=1.5e+02 Score=22.01 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 62 NFEYDARQSDLERLFR-RYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 62 nLp~~~te~~L~~~F~-~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
-++.-+.-++|.+... .||.-.++.....--.|-..+++|-++||+.|+-..- -+.|+|-+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~~---~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSIH---MKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHHCSS---CCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhccCcc---ccceEEEE
Confidence 4577788888887765 6898888777666678899999999999988765433 34444443
No 421
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=26.40 E-value=1.9e+02 Score=21.18 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEEeeccC
Q 014331 62 NFEYDARQSDLERLFR-RYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHER 130 (426)
Q Consensus 62 nLp~~~te~~L~~~F~-~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~a~~~~ 130 (426)
-++.-+.-++|.+... .||.-.++.....--.|-..+++|-++|++.|+-..- -+.|+|-+.....
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~~---mkSLRIlL~~~~~ 85 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSS---MKSLRILLLSQDR 85 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHSTT---TTEEEEEEEECSS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccCcc---ccceEEEEEcCCc
Confidence 4577788888877665 6898888877777778889999999999988775543 5667776665543
No 422
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.48 E-value=44 Score=34.51 Aligned_cols=49 Identities=8% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHh----hcCCeeEEEEe-------CCEEEEEEcChHhHHHHHHhcC
Q 014331 62 NFEYDARQSDLERLFR----RYGKVDRVDMK-------SGFAFIYMDDERDAEDAIRGLD 110 (426)
Q Consensus 62 nLp~~~te~~L~~~F~----~~G~V~~v~i~-------~g~aFV~F~~~~~A~~Al~~ln 110 (426)
..+.+.+--||.++|- .+|.|+++.|. ..+++|.|.+.++|..|+..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 4455666668999994 58999999883 4578999999999999887664
No 423
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=25.34 E-value=30 Score=24.11 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=14.5
Q ss_pred CCeeEEEEeCCEEEEEEcChH
Q 014331 80 GKVDRVDMKSGFAFIYMDDER 100 (426)
Q Consensus 80 G~V~~v~i~~g~aFV~F~~~~ 100 (426)
|+| |...+.-|||.|+|..
T Consensus 34 GtI--Vd~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQS 52 (69)
T ss_dssp EEE--EEECSSCEEEEETTCC
T ss_pred EEE--EecCCceEEEEecCCc
Confidence 666 5567899999998754
No 424
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.97 E-value=1.4e+02 Score=26.83 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.1
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVD 83 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~ 83 (426)
..+.|+|||+.++..-|.+++.. +.+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCC
Confidence 46789999999999999999987 5554
No 425
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=24.09 E-value=1.5e+02 Score=22.34 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEEeCCEEEEEEcChHhHHHHHHhcCCceecCCCcEEEEEE
Q 014331 62 NFEYDARQSDLERLFR-RYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEW 125 (426)
Q Consensus 62 nLp~~~te~~L~~~F~-~~G~V~~v~i~~g~aFV~F~~~~~A~~Al~~lng~~~~~~g~~i~V~~ 125 (426)
-++.-+.-++|.+... .||.-.++.....--.|-..+++|.++||+.|+-..- -+.|+|-+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDrs~~---mkSLRIlL 107 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSSS---MKSLRILL 107 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHHCSS---CCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhccCcc---ccceEEEE
Confidence 4577788888887665 6898888877766678889999999999988765433 34444443
No 426
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=22.73 E-value=66 Score=24.26 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeCCEEE
Q 014331 67 ARQSDLERLFRRYGKVDRVDMKSGFAF 93 (426)
Q Consensus 67 ~te~~L~~~F~~~G~V~~v~i~~g~aF 93 (426)
.+++.|.++|+.+|.|..-.|--||||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEEE
Confidence 467789999999999998888666654
No 427
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.63 E-value=73 Score=24.32 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.6
Q ss_pred ceEEEEEe---cCEEEEEecCHHHHHHHHHHcCCC
Q 014331 178 KIISVRIR---RNFAFVQYEVQEDATRALDATNMS 209 (426)
Q Consensus 178 ~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~ 209 (426)
.|..+..+ +||.|||-....+...|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 47777774 899999999999999999877554
No 428
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=22.57 E-value=54 Score=26.26 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=22.6
Q ss_pred EcCCCCCCCHHHHHHHHh-hcC--CeeEEEE
Q 014331 60 CGNFEYDARQSDLERLFR-RYG--KVDRVDM 87 (426)
Q Consensus 60 V~nLp~~~te~~L~~~F~-~~G--~V~~v~i 87 (426)
|-++...++++++.++|. .++ +|..|.|
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~l 98 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHL 98 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEee
Confidence 778889999999999995 444 5677776
No 429
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.41 E-value=78 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.376 Sum_probs=26.0
Q ss_pred CeeEEEEe---CCEEEEEEcChHhHHHHHHhcCCc
Q 014331 81 KVDRVDMK---SGFAFIYMDDERDAEDAIRGLDRT 112 (426)
Q Consensus 81 ~V~~v~i~---~g~aFV~F~~~~~A~~Al~~lng~ 112 (426)
.|.+|... +||-|||=.++.++..|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 36676663 999999999999999999766554
No 430
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.38 E-value=1.8e+02 Score=19.29 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=37.2
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE--eCCEEEEEEc----ChHhHHHHHHh
Q 014331 57 PIFCGNFEYDARQSDLERLFRRYGKVDRVDM--KSGFAFIYMD----DERDAEDAIRG 108 (426)
Q Consensus 57 ~l~V~nLp~~~te~~L~~~F~~~G~V~~v~i--~~g~aFV~F~----~~~~A~~Al~~ 108 (426)
+|.|.++.-.--...|++.+.....|..+.+ ..+.+.|+|. +.++...||+.
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5777777655557888899998877876666 5788999995 34555566644
No 431
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.64 E-value=1.5e+02 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.7
Q ss_pred ccEEEcCCCCCCCHHHHHHHHhhcCCee
Q 014331 56 RPIFCGNFEYDARQSDLERLFRRYGKVD 83 (426)
Q Consensus 56 ~~l~V~nLp~~~te~~L~~~F~~~G~V~ 83 (426)
..+.|+|||+.++..-|.+++.....+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~ 123 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVP 123 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCS
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCc
Confidence 3488999999999999999998654343
Done!