BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014332
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/440 (70%), Positives = 361/440 (82%), Gaps = 30/440 (6%)
Query: 17 PLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSD 76
PL E DI +LK+YG PY+ +K+ E ++KD+ ++ + G+KESDTGLA WD++ D
Sbjct: 28 PLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGD 87
Query: 77 KQMMQEEQPLQVARCTKIISPNSED------------------------------AKYVI 106
+Q + EE PLQVARCTKII N E AKYVI
Sbjct: 88 RQRLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVI 147
Query: 107 NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVT 166
N+KQIAKFVVGLG++VSPTDIEEGMRVGVDR+KY I++PLPP+IDPSVTMMTVEEKPDVT
Sbjct: 148 NLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVT 207
Query: 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226
Y+DVGGCK+QIEK+REVVELP+L PE+F LGIDPPKG+L YGPPGTGKTL ARAVANRT
Sbjct: 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267
Query: 227 DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN 286
DA FIRVIGSELVQKYVGEGARMVRELF+MAR+KKACI+FFDE+DA+GGARFDDG GGDN
Sbjct: 268 DATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN 327
Query: 287 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 346
EVQRTMLE++ QLDGFD RGNIKV+ ATNRP+TLDPALLRPGR+DRKVEF LPDLE R
Sbjct: 328 EVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRAN 387
Query: 347 IFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406
IF+IH+++M+ ER IR+EL++RLCPNSTGA++RSVCTEAGMFAIRARRK TEKDFL AV
Sbjct: 388 IFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAV 447
Query: 407 NKVIKGYQKFSATPKYMVYN 426
+KVI GY+KFS+T +YM YN
Sbjct: 448 DKVISGYKKFSSTSRYMQYN 467
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 348 bits (892), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 184/398 (46%), Positives = 258/398 (64%), Gaps = 12/398 (3%)
Query: 25 LLKTY--GLGPY-STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQ 81
+L+T+ G+ PY I++ E +I+ + V L + A + + D+ +
Sbjct: 11 VLETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRN-----ALNDKVRFIKDELRLL 65
Query: 82 EEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQ 141
+E V KI+S D K ++ V+ K++V + ++ D++ RV + + Y
Sbjct: 66 QEPGSYVGEVIKIVS----DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYM 121
Query: 142 IQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP 201
+ L K DP V++M VE+ PD TY+ VGG +QI++++EV+ELP+ HPE F LGI
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ 181
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK 261
PKGV+ YGPPGTGKTLLARAVA+ TD FIRV G+ELVQKY+GEG+RMVRELF MAR
Sbjct: 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA 241
Query: 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321
I+F DE+D+IG R + GGD+EVQRTMLE++NQLDGF+ NIK++MATNR D LD
Sbjct: 242 PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301
Query: 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSV 381
PALLRPGR+DRK+EF P + +R +I +IH+R MN R I +A +GAD++ V
Sbjct: 302 PALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGV 361
Query: 382 CTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSAT 419
CTEAGM+A+R RR VT++DF AV KV+ Q+ + +
Sbjct: 362 CTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAIS 399
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/327 (46%), Positives = 220/327 (67%), Gaps = 4/327 (1%)
Query: 85 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 144
PL + +II +D ++ + + V + V +E G V + I
Sbjct: 103 PLSIGTLEEII----DDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVG 158
Query: 145 PLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKG 204
L DP V++M +++ P +Y+D+GG + QI++++E VELP+ HPE + ++GI PPKG
Sbjct: 159 VLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKG 218
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
V+ YG PGTGKTLLA+AVAN+T A F+R++GSEL+QKY+G+G R+ R++F++A I
Sbjct: 219 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSI 278
Query: 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL 324
VF DE+DAIG R+D GG+ E+QRTMLE++NQLDGFD RG++KV+MATN+ +TLDPAL
Sbjct: 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338
Query: 325 LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTE 384
+RPGR+DRK+ F PDL ++ +I IHT MN D+ E L + +GADI+++CTE
Sbjct: 339 IRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398
Query: 385 AGMFAIRARRKTVTEKDFLDAVNKVIK 411
AG+ A+R RR VT +DF A +V+K
Sbjct: 399 AGLLALRERRMQVTAEDFKQAKERVMK 425
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/322 (48%), Positives = 213/322 (66%), Gaps = 1/322 (0%)
Query: 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160
+ KY++ +++VG+ + V + +++G+RV +D I LP + DP V MT
Sbjct: 114 EEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSF 173
Query: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
E+ ++T++ +GG EQI ++REV+ELP+ +PE F ++GI PPKGVL YGPPGTGKTLLA+
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAK 233
Query: 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280
AVA A FI S +V KY+GE AR++RE+F A+ + CI+F DEVDAIGG RF +
Sbjct: 234 AVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSE 293
Query: 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340
G D E+QRT++E++ Q+DGFD G K++MATNRPDTLDPALLRPGRLDRKVE LP+
Sbjct: 294 GTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 341 LESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 400
R +IFKIHT + + FE ++ GADIR+ TEAG FAIR R +
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413
Query: 401 DFLDAVNKVIKGYQKFSATPKY 422
D + AV KV + +K T +Y
Sbjct: 414 DLMKAVRKVAE-VKKLEGTIEY 434
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 310 bits (795), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 141/267 (52%), Positives = 200/267 (74%)
Query: 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216
M V+E+P+V Y D+GG ++Q++++REVVELP+ HPE F K+GI+PPKG+L YGPPGTGKT
Sbjct: 6 MEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 217 LLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276
LLA+AVA T+A FIRV+GSELV+K++GEGA +V+++F++A+ K I+F DE+DAI
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336
R D GGD EVQRT+++++ ++DGFDARG++K++ ATNRPD LDPA+LRPGR DR +E
Sbjct: 126 RTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185
Query: 337 GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKT 396
PD + R +I KIHTR MN D+ E +A++ GA+++++CTEAGM AIR R
Sbjct: 186 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245
Query: 397 VTEKDFLDAVNKVIKGYQKFSATPKYM 423
VT DF AV K+++ + P ++
Sbjct: 246 VTMDDFRKAVEKIMEKKKVKVKEPAHL 272
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 303 bits (776), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/290 (51%), Positives = 199/290 (68%), Gaps = 5/290 (1%)
Query: 120 DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEK 179
DK+ P D+ VGV+++ Y I LP + D V M V+EKP TY+DVGG +QIE+
Sbjct: 138 DKLKPNDL-----VGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEE 192
Query: 180 MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239
+ E + LPM +KF +GI PKG L YGPPGTGKTLLARA A +T+A F+++ +LV
Sbjct: 193 LVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252
Query: 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL 299
Q Y+GEGA++VR+ F +A+ K I+F DE+DAIG RFD GD EVQRTMLE++NQL
Sbjct: 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312
Query: 300 DGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER 359
DGF + +KVL ATNR D LDPALLR GRLDRK+EF LP +SR QI +IH+R M +
Sbjct: 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD 372
Query: 360 DIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409
DI ++ LAR GA +++V EAGM A+R + +V +DF++ +++V
Sbjct: 373 DINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 184/283 (65%), Gaps = 1/283 (0%)
Query: 130 GMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML 189
M V + R+ + LPP D S+++M EKPDVTY DVGG Q +++RE VELP++
Sbjct: 134 SMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLV 193
Query: 190 HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARM 249
+ + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE V KY+GEG RM
Sbjct: 194 QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRM 253
Query: 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309
VR++F++AR I+F DEVD+I RFD G D EVQR ++E++ Q+DGFD N+K
Sbjct: 254 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313
Query: 310 VLMATNRPDTLDPALLRPGRLDRKVEF-GLPDLESRTQIFKIHTRTMNCERDIRFELLAR 368
V+MATNR DTLDPALLRPGRLDRK+EF L D R IF M+ + + L
Sbjct: 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLII 373
Query: 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 411
+ +GA I ++ EAG+ A+R R + + D +A +K
Sbjct: 374 RNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 416
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 164/248 (66%), Gaps = 1/248 (0%)
Query: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
VT+ DVGG +E IE+++EVVE + P KF ++G PKG+L GPPGTGKTLLARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
+ F + GS+ V+ +VG GA VR+LF A++ CIVF DE+DA+G R GG
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESR 344
+E ++T+ +++ ++DGFD++ I V+ ATNRPD LDPALLRPGR D+K+ PD+ R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 345 TQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 404
+I +IHTR D+ E++A+ P GAD+ ++ EA + A R R +T KDF +
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 405 AVNKVIKG 412
A+++VI G
Sbjct: 252 AIDRVIAG 259
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 231 bits (588), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
VT+ DVGG +E IE+++EVVE + P KF ++G PKG+L GPPGTG TLLARAVA
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
+ F + GS+ V+ +VG GA VR+LF A++ CIVF DE+DA+G R GG
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESR 344
+E ++T+ +++ ++DGFD++ I V+ ATNRPD LDPALLRPGR D+K+ PD+ R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 345 TQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 404
+I +IHTR D+ E++A+ P GAD+ ++ EA + A R R +T KDF +
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 405 AVNKVIKG 412
A+++VI G
Sbjct: 252 AIDRVIAG 259
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 163/258 (63%), Gaps = 1/258 (0%)
Query: 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216
M E++ T+ DV GC E E++ E+VE + P +F KLG PKGVL GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 217 LLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276
LLA+A+A F + GS+ V+ +VG GA VR++F+ A+ CI+F DE+DA+G
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336
R GG +E ++T+ +++ ++DGF+ I V+ ATNRPD LDPALLRPGR DR+V
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
Query: 337 GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKT 396
GLPD+ R QI K+H R + DI ++AR P +GAD+ ++ EA +FA R ++
Sbjct: 180 GLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239
Query: 397 VTEKDFLDAVNKVIKGYQ 414
V+ +F A +K++ G +
Sbjct: 240 VSMVEFEKAKDKIMMGLE 257
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 164/275 (59%), Gaps = 5/275 (1%)
Query: 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCK 174
++ L D+ ++ + V +D ++ + + +PS TV E P VT+ D+GG +
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLE 483
Query: 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234
+ +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN A FI +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294
G EL+ + GE VRE+F AR C++FFDE+D+I AR + G R + +
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 603
Query: 295 IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354
I+ ++DG + N+ ++ ATNRPD +DPA+LRPGRLD+ + LPD +SR I K + R
Sbjct: 604 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
Query: 355 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMFA 389
+D+ E LA++ +GAD+ +C A A
Sbjct: 664 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
+V Y+DVGGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 224 NRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283
N T A F + G E++ K GE +R+ F+ A I+F DE+DAI R +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
G+ E +R + +++ +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +I +IHT+ M D+ E +A GAD+ ++C+EA + AIR + + +D
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 164/275 (59%), Gaps = 5/275 (1%)
Query: 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCK 174
++ L D+ ++ + V +D ++ + + +PS TV E P VT+ D+GG +
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALS-----QSNPSALRETVVEVPQVTWEDIGGLE 483
Query: 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234
+ +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTLLA+A+AN A FI +
Sbjct: 484 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543
Query: 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294
G EL+ + GE VRE+F AR C++FFDE+D+I AR + G R + +
Sbjct: 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQ 603
Query: 295 IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354
I+ ++DG + N+ ++ ATNRPD +DPA+LRPGRLD+ + LPD +SR I K + R
Sbjct: 604 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663
Query: 355 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMFA 389
+D+ E LA++ +GAD+ +C A A
Sbjct: 664 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
+V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 224 NRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283
N T A F + G E++ K GE +R+ F+ A I+F DE+DAI R +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
G+ E +R + +++ +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +I +IHT+ M D+ E +A GAD+ ++C+EA + AIR + + +D
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
+V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 224 NRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283
N T A F + G E++ K GE +R+ F+ A I+F DE+DAI R +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
G+ E +R + +++ +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +I +IHT+ M D+ E +A GAD+ ++C+EA + AIR + + +D
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
+V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 224 NRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283
N T A F + G E++ K GE +R+ F+ A I+F DE+DAI R +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
G+ E +R + +++ +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +I +IHT+ M D+ E +A GAD+ ++C+EA + AIR + + +D
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
+V Y+D+GGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 224 NRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283
N T A F + G E++ K GE +R+ F+ A I+F DE+DAI R +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
G+ E +R + +++ +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +I +IHT+ M D+ E +A GAD+ ++C+EA + AIR + + +D
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 153/238 (64%), Gaps = 3/238 (1%)
Query: 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
+V Y+DVGGC++Q+ +++E+VELP+ HP F +G+ PP+G+L YGPPGTGKTL+ARAVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 224 NRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283
N T A F + G E++ K GE +R+ F+ A I+F DE+DAI R +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
G+ E +R + +++ +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +I +IHT+ M D+ E +A GAD+ ++C+EA + AIR + + +D
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 146/232 (62%)
Query: 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTL 217
TV E P VT+ D+GG ++ +++E+V+ P+ HP+KF+K G+ P KGVL YGPPG GKTL
Sbjct: 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTL 64
Query: 218 LARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277
LA+A+AN A FI + G EL+ + GE VRE+F AR C++FFDE+D+I AR
Sbjct: 65 LAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124
Query: 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337
+ G R + +I+ ++DG + N+ ++ ATNRPD +DPA+LRPGRLD+ +
Sbjct: 125 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
Query: 338 LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFA 389
LPD +SR I K + R +D+ E LA++ +GAD+ +C A A
Sbjct: 185 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 161/257 (62%), Gaps = 3/257 (1%)
Query: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
EKP+V + D+ G +E E++ E+V+ + +PE++ LG PKGVL GPPGTGKTLLA+
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280
AVA F + GS ++ +VG GA VR+LF+ A+ + I+F DE+DAIG +R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 281 G-VGGDNEVQRTMLEIVNQLDGFDARGN-IKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338
G V G++E ++T+ +++ ++DGF + + VL ATNRP+ LDPAL+RPGR DR+V
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 339 PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398
PD R +I K+H + + D+ + +A+L GAD+ ++ EA + A R +K V
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 399 EKDFLDAVNKVIKGYQK 415
++ +AV + I G +K
Sbjct: 243 QQHLKEAVERGIAGLEK 259
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 158/250 (63%), Gaps = 1/250 (0%)
Query: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
E P VT+ DV G +E E+++E+VE + +P +F ++G PKGVL GPPG GKT LAR
Sbjct: 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 82
Query: 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280
AVA FI GS+ V+ +VG GA VR+LF+ A+ CIVF DE+DA+G R
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340
GG++E ++T+ +++ ++DGF+ I V+ ATNRPD LDPALLRPGR DR++ PD
Sbjct: 143 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
Query: 341 LESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 400
++ R QI +IH R D+ LLA+ P GAD+ ++ EA + A R R+ +T K
Sbjct: 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 262
Query: 401 DFLDAVNKVI 410
D +A ++V+
Sbjct: 263 DLEEAADRVM 272
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 158/250 (63%), Gaps = 1/250 (0%)
Query: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
E P VT+ DV G +E E+++E+VE + +P +F ++G PKGVL GPPG GKT LAR
Sbjct: 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91
Query: 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280
AVA FI GS+ V+ +VG GA VR+LF+ A+ CIVF DE+DA+G R
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340
GG++E ++T+ +++ ++DGF+ I V+ ATNRPD LDPALLRPGR DR++ PD
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 341 LESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 400
++ R QI +IH R D+ LLA+ P GAD+ ++ EA + A R R+ +T K
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 271
Query: 401 DFLDAVNKVI 410
D +A ++V+
Sbjct: 272 DLEEAADRVM 281
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 156/249 (62%), Gaps = 1/249 (0%)
Query: 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
+ E P VT+ DV G +E E+++E+VE + +P +F ++G PKGVL GPPG GKT L
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89
Query: 219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278
ARAVA FI GS+ V+ +VG GA VR+LF+ A+ CIVF DE+DA+G R
Sbjct: 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149
Query: 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338
GG++E ++T+ +++ ++DGF+ I V+ ATNRPD LDPALLRPGR DR++
Sbjct: 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 209
Query: 339 PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398
PD++ R QI +IH R D+ LLA+ P GAD+ ++ EA + A R R+ +T
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269
Query: 399 EKDFLDAVN 407
KD +A +
Sbjct: 270 MKDLEEAAS 278
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/250 (43%), Positives = 156/250 (62%), Gaps = 1/250 (0%)
Query: 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTL 217
+ E P VT+ DV G +E E+++E+VE + +P +F ++G PKGVL GPPG GKT
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64
Query: 218 LARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277
LARAVA FI GS+ V+ +VG GA VR+LF+ A+ CIVF DE+DA+G R
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
Query: 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337
GG++E ++T+ +++ ++DGF+ I V+ ATNRPD LDPALLRPGR DR++
Sbjct: 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184
Query: 338 LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 397
PD++ R QI +IH R D+ LLA+ P GAD+ ++ EA + A R R+ +
Sbjct: 185 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKI 244
Query: 398 TEKDFLDAVN 407
T KD +A +
Sbjct: 245 TMKDLEEAAS 254
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 153/256 (59%), Gaps = 4/256 (1%)
Query: 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224
V++ DV G E ++RE V+ + PE+F++LG PKG L GPPG GKTLLA+AVA
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 225 RTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGG 284
F+ + G+E V+ G GA VR LF+ AR++ CIV+ DE+DA+G R G
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 285 DN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343
N E ++T+ +++ ++DG ++ VL +TNR D LD AL+RPGRLDR V LP L+
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 344 RTQIFKIHTRTMNCERDIRF--ELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
R +IF+ H +++ + F + LA L P +GADI ++C EA + A R +V +
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241
Query: 402 FLDAVNKVIKGYQKFS 417
F AV +V+ G K S
Sbjct: 242 FEYAVERVLAGTAKKS 257
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 159/275 (57%), Gaps = 22/275 (8%)
Query: 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT 216
MTV P+VT+ D+G ++ E++ + P+ +P++F LG+ P GVL GPPG GKT
Sbjct: 2 MTV---PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKT 58
Query: 217 LLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276
LLA+AVAN + FI V G EL+ YVGE R VR++FQ A++ C++FFDEVDA+
Sbjct: 59 LLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR 118
Query: 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336
R D G R + +++ ++DG +AR + ++ ATNRPD +DPA+LRPGRLD+ +
Sbjct: 119 RSDRETGAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFV 175
Query: 337 GLPDLESRTQIFKIHTRTMN---CERDIRFELLA--RLCPNSTGADIRSVCTEAGMFAIR 391
GLP R I K T+ + D+ E +A C TGAD+ ++ EA + A+R
Sbjct: 176 GLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235
Query: 392 ---ARRKT--------VTEKDFLDAVNKVIKGYQK 415
AR+K+ V+ K F +A KV K
Sbjct: 236 QEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISK 270
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 145/257 (56%), Gaps = 16/257 (6%)
Query: 150 IDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYG 209
IDP +++ EKP+V + DV G + E ++E V LP+ P F K P G+L YG
Sbjct: 2 IDPFTAILS--EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYG 58
Query: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDE 269
PPGTGK+ LA+AVA ++ F V S+LV K++GE ++V++LF MAR K I+F D+
Sbjct: 59 PPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQ 118
Query: 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMATNRPDTLDPALLRP 327
VDA+ G R G G +R E++ Q++G D++G + VL ATN P LD A+ R
Sbjct: 119 VDALTGTR---GEGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR- 173
Query: 328 GRLDRKVEFGLPDLESRTQIFKIHTRTMNC---ERDIRFELLARLCPNSTGADIRSVCTE 384
R +R++ LPDL +RT +F+I+ C + D R L + +G+DI V +
Sbjct: 174 -RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYR--TLGAMTEGYSGSDIAVVVKD 230
Query: 385 AGMFAIRARRKTVTEKD 401
A M IR + KD
Sbjct: 231 ALMQPIRKIQSATHFKD 247
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 154/279 (55%), Gaps = 23/279 (8%)
Query: 128 EEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELP 187
EEG G + NK K+ +++ + EKP+V + DV G + E ++E V LP
Sbjct: 20 EEGEDNGGEDNK---------KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILP 70
Query: 188 MLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGA 247
+ P F K P G+L YGPPGTGK+ LA+AVA ++ F V S+LV K++GE
Sbjct: 71 VKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 129
Query: 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DAR 305
++V++LF MAR K I+F D+VDA+ G R G G +R E++ Q++G D++
Sbjct: 130 KLVKQLFAMARENKPSIIFIDQVDALTGTR---GEGESEASRRIKTELLVQMNGVGNDSQ 186
Query: 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH---TRTMNCERDIR 362
G + VL ATN P LD A+ R R +R++ LPDL +RT +F+I+ T ++ + D R
Sbjct: 187 G-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYR 243
Query: 363 FELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401
L + +G+DI V +A M IR + KD
Sbjct: 244 --TLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 280
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 141/249 (56%), Gaps = 14/249 (5%)
Query: 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTL 217
++ EKP+V + DV G + E ++E V LP+ P F K P G+L YGPPGTGK+
Sbjct: 17 SLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 75
Query: 218 LARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277
LA+AVA ++ F V S+LV K++GE ++V++LF MAR K I+F DEVDA+ G R
Sbjct: 76 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR 135
Query: 278 FDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMATNRPDTLDPALLRPGRLDRKVE 335
G G +R E++ Q++G D++G + VL ATN P LD A+ R R +R++
Sbjct: 136 ---GEGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIY 189
Query: 336 FGLPDLESRTQIFKIHTRTMNC---ERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 392
LPDL +RT +F+I+ C + D R L + +G+DI V +A M IR
Sbjct: 190 IPLPDLAARTTMFEINVGDTPCVLTKEDYR--TLGAMTEGYSGSDIAVVVKDALMQPIRK 247
Query: 393 RRKTVTEKD 401
+ KD
Sbjct: 248 IQSATHFKD 256
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 145/258 (56%), Gaps = 14/258 (5%)
Query: 149 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCY 208
K+ +++ + EKP+V + DV G + E ++E V LP+ P F K P G+L Y
Sbjct: 17 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLY 75
Query: 209 GPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFD 268
GPPGTGK+ LA+AVA ++ F V S+LV K++GE ++V++LF MAR K I+F D
Sbjct: 76 GPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 135
Query: 269 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMATNRPDTLDPALLR 326
+VDA+ G R G G +R E++ Q++G D++G + VL ATN P LD A+ R
Sbjct: 136 QVDALTGTR---GEGESEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR 191
Query: 327 PGRLDRKVEFGLPDLESRTQIFKIHTRTMNC---ERDIRFELLARLCPNSTGADIRSVCT 383
R +R++ LPDL +RT +F+I+ C + D R L + +G+DI V
Sbjct: 192 --RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYR--TLGAMTEGYSGSDIAVVVK 247
Query: 384 EAGMFAIRARRKTVTEKD 401
+A M IR + KD
Sbjct: 248 DALMQPIRKIQSATHFKD 265
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 137/250 (54%), Gaps = 9/250 (3%)
Query: 146 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGV 205
L PK+ + ++ P V + D+ G + ++E+V PML P+ F L PPKG+
Sbjct: 62 LEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGI 120
Query: 206 LCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265
L +GPPGTGKTL+ + +A+++ A F + S L K+VGEG +MVR LF +AR ++ ++
Sbjct: 121 LLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVI 180
Query: 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPA 323
F DE+D++ R D G +R E + QLDG ++L+ ATNRP +D A
Sbjct: 181 FIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEA 237
Query: 324 LLRPGRLDRKVEFGLPDLESRTQI-FKIHTRTMNCERDIRFELLARLCPNSTGADIRSVC 382
R RL +++ LP+ +R QI + ++ C + E + + +GAD+ +C
Sbjct: 238 ARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295
Query: 383 TEAGMFAIRA 392
EA + IR+
Sbjct: 296 REASLGPIRS 305
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 144 bits (362), Expect = 1e-34, Method: Composition-based stats.
Identities = 64/89 (71%), Positives = 78/89 (87%)
Query: 338 LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 397
LPDLE R IF+IH+++M+ ER IR+EL++RLCPNSTGA++RSVCTEAGMFAIRARRK
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 398 TEKDFLDAVNKVIKGYQKFSATPKYMVYN 426
TEKDFL AV+KVI GY+KFS+T +YM YN
Sbjct: 67 TEKDFLKAVDKVISGYKKFSSTSRYMQYN 95
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 137/250 (54%), Gaps = 9/250 (3%)
Query: 145 PLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKG 204
P K+ + V E+P+V ++DV G + E ++E V LP+ P F P +G
Sbjct: 111 PEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRG 169
Query: 205 VLCYGPPGTGKTLLARAVANR-TDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKAC 263
+L +GPPGTGK+ LA+AVA ++ F + S+LV K++GE ++V+ LFQ+AR K
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN-IKVLMATNRPDTLDP 322
I+F DE+D++ G+R ++ +R E + Q+ G + I VL ATN P LD
Sbjct: 230 IIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 323 ALLRPGRLDRKVEFGLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSV 381
A+ R R ++++ LP+ +R +F++H T N + F+ L R +GADI +
Sbjct: 287 AIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344
Query: 382 CTEAGMFAIR 391
+A M +R
Sbjct: 345 VRDALMQPVR 354
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 132/236 (55%), Gaps = 9/236 (3%)
Query: 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
V E+P+V ++DV G + E ++E V LP+ P F P +G+L +GPPGTGK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYL 61
Query: 219 ARAVANRTD-ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277
A+AVA + + F + S+LV K++GE ++V+ LFQ+AR K I+F DE+D++ G+R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGN-IKVLMATNRPDTLDPALLRPGRLDRKVEF 336
++ +R E + Q+ G + I VL ATN P LD A+ R R ++++
Sbjct: 122 SEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 337 GLPDLESRTQIFKIHT-RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391
LP+ +R +FK+H T N + F L R +GADI + +A M +R
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 232
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 132 bits (332), Expect = 3e-31, Method: Composition-based stats.
Identities = 59/87 (67%), Positives = 73/87 (83%)
Query: 340 DLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTE 399
DLE R IF+IH+++ + ER IR+EL++RLCPNSTGA++RSVCTEAG FAIRARRK TE
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATE 61
Query: 400 KDFLDAVNKVIKGYQKFSATPKYMVYN 426
KDFL AV+KVI GY+KFS+T +Y YN
Sbjct: 62 KDFLKAVDKVISGYKKFSSTSRYXQYN 88
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 136/240 (56%), Gaps = 17/240 (7%)
Query: 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
V+ V ++D+ G + ++E+V LP L PE F L P +G+L +GPPG GKT+L
Sbjct: 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTML 164
Query: 219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278
A+AVA ++A F + + L KYVGEG ++VR LF +AR + I+F D+VD++ R
Sbjct: 165 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224
Query: 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM--ATNRPDTLDPALLRPGRLDRKVEF 336
+ G + +R E + + DG + G+ +VL+ ATNRP LD A+LR R ++V
Sbjct: 225 E---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYV 279
Query: 337 GLPDLESRTQIFKIHTRTMNCERD---IRFEL--LARLCPNSTGADIRSVCTEAGMFAIR 391
LP+ E+R + + C++ + EL LAR+ +G+D+ ++ +A + IR
Sbjct: 280 SLPNEETRLL----LLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 138/280 (49%), Gaps = 24/280 (8%)
Query: 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
VE V + D+ G + ++E+V LP + PE F L P KG+L +GPPG GKTLL
Sbjct: 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLL 70
Query: 219 ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278
ARAVA A F+ + + L KYVG+G ++VR LF +AR + I+F DEVD++ R
Sbjct: 71 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERS 130
Query: 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338
++ L + L G I VL ATNRP LD A LR R ++V L
Sbjct: 131 SSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSL 188
Query: 339 PDLESRTQIFKIHTRTMNCERDIR-FELLARLCPNSTGADIRSVCTEAGMFAIR------ 391
PD ++R + + D LA++ +G+D+ ++ +A + IR
Sbjct: 189 PDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ 248
Query: 392 ------ARRKTVTEKDFLDAVNKV--------IKGYQKFS 417
+ + +TE+DF ++ ++ + Y+K+S
Sbjct: 249 VKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWS 288
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 51/73 (69%)
Query: 339 PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398
P+ E+R I KIH+R MN R I +A L P ++GA+++ VCTEAGM+A+R RR VT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 399 EKDFLDAVNKVIK 411
++DF AV KV++
Sbjct: 71 QEDFEMAVAKVMQ 83
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%)
Query: 339 PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398
P+ E+R I KIH+R N R I +A L P ++GA+++ VCTEAG +A+R RR VT
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVHVT 62
Query: 399 EKDFLDAVNKV 409
++DF AV KV
Sbjct: 63 QEDFEXAVAKV 73
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 71/152 (46%), Gaps = 19/152 (12%)
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EGARMVRELFQMARS 259
PK +L GP G GKT +AR +A +A FI+V ++ + YVG E ++R+L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 260 -----KKACIVFFDEVDAIGGARFDDGVGGDNE-VQRTMLEIVNQLDGFDARGNIK---- 309
++ IVF DE+D I G E VQR +L +V G +K
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 310 VLMATN-----RPDTLDPALLRPGRLDRKVEF 336
+ +A+ RP L P L GRL +VE
Sbjct: 170 LFIASGAFQVARPSDLIPEL--QGRLPIRVEL 199
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%)
Query: 347 IFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406
IF T MN ++ E +GADI S+C E+GM A+R R V KDF A
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68
Query: 407 NKVIK 411
VIK
Sbjct: 69 KTVIK 73
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEGA-RMVRELFQMA----R 258
+L GP G+GKTL+A+ +A D + L + YVGE ++ L Q + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 259 SKKACIVFFDEVDAIGGARFDDGVGGD---NEVQRTMLEIV 296
+ IVF DE+D I + + D VQ+ +L+IV
Sbjct: 135 KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKA 262
++ +GPPGTGKT LA +A +A R+ V G + +RE + AR +
Sbjct: 51 HSMILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRN 103
Query: 263 C----IVFFDEV 270
I+F DEV
Sbjct: 104 AGRRTILFVDEV 115
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEGA-RMVRELFQM----AR 258
+L GP G+GKTLLA +A D F + L + YVGE ++++L Q +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 259 SKKACIVFFDEVDAI 273
+ IV+ D++D I
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEGA-RMVRELFQM----AR 258
+L GP G+GKTLLA +A D F + L + YVGE ++++L Q +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 259 SKKACIVFFDEVDAI 273
+ IV+ D++D I
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EGARMVRELFQMA 257
PK +L GP G GKT +AR +A +A FI+V ++ + YVG E ++R+L A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EGARMVRELFQMA 257
PK +L GP G GKT +AR +A +A FI+V ++ + YVG E ++R+L A
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EGARMVRELFQMA 257
PK +L GP G GKT +AR +A +A FI+V ++ + YVG E ++R+L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EGARMVREL 253
PK +L GP G GKT +AR +A +A FI+V ++ + YVG E ++R+L
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EGARMVRELFQMA 257
PK +L GP G GKT +AR +A +A FI+V ++ + YVG E ++R+L A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMA 257
P + GP G GKT LARA+A + IR+ SE ++K+ G +L +
Sbjct: 520 PIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV 575
Query: 258 RSKKACIVFFDEVD 271
R K +V D ++
Sbjct: 576 RRKPYSVVLLDAIE 589
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 27/185 (14%)
Query: 192 EKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMV 250
+ F+KL I P + +G G GK+ V + I + EL GE A+++
Sbjct: 25 KNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLI 84
Query: 251 RELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNE-------VQRTMLEIVN-- 297
R+ ++ A R C +F +++DA G R +GG + V T++ I +
Sbjct: 85 RQRYREAAEIIRKGNMCCLFINDLDA-GAGR----MGGTTQYTVNNQMVNATLMNIADNP 139
Query: 298 ---QLDG-FDARGNIKV--LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351
QL G ++ + N +V ++ N TL L+R GR+++ + P E R +
Sbjct: 140 TNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCTGI 197
Query: 352 TRTMN 356
RT N
Sbjct: 198 FRTDN 202
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSELVQKYVGEGARMVRELFQMA--- 257
+ VL GPPGTGKT LA A+A + F ++GSE+ + + ++ E F+ A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 122
Query: 258 RSKKACIVFFDEVDAIGGARFDDGVGG 284
R K+ V+ EV + ++ +GG
Sbjct: 123 RIKETKEVYEGEVTELTPCETENPMGG 149
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 177 IEKMREVVELPMLHPEKFVKLGIDPPKGVLCY-GPPGTGKTLLARAVANRTDACFIRV 233
+EK++E + L L +K K P +LC GPPG GKT LA+++A F+R+
Sbjct: 86 LEKVKERI-LEYLAVQKLTKSLKGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 44/170 (25%)
Query: 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKT----LLARA 221
T ++V G E I +R KFV G P +L YGPPGTGKT LAR
Sbjct: 23 TLDEVYGQNEVITTVR-----------KFVDEGKLP--HLLFYGPPGTGKTSTIVALARE 69
Query: 222 VANRTDACFIRVI------GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275
+ + + + + G ++V+ + + A R++F SK ++ DE DA+
Sbjct: 70 IYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS-TRQIF----SKGFKLIILDEADAMTN 124
Query: 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 325
A N ++R + N + + N L PALL
Sbjct: 125 A-------AQNALRRVIERYTK---------NTRFCVLANYAHKLTPALL 158
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSEL 238
+ VL GPPGTGKT LA A+A + F +GSE+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEV 115
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 84/237 (35%), Gaps = 43/237 (18%)
Query: 206 LCYGPPGTGKTLLARAVANR----------TDACFIRV-IGSELV-QKYVGEGARMVREL 253
L G G GKT +A +A R D + IGS L KY G+ + + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313
+ I+F DE+ I GA G +V + N + + G I+V+ +
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGA----GAASGGQV-----DAANLIKPLLSSGKIRVIGS 321
Query: 314 TNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLA- 367
T + D AL R +K++ P +E QI D+R+ A
Sbjct: 322 TTYQEFSNIFEKDRAL---ARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAV 378
Query: 368 -------------RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 411
R P+ I A + + R+KTV D V ++ +
Sbjct: 379 RAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 201 PPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK------------YVG- 244
P L GP G GKT LA+ +A T+ IR+ +E ++K YVG
Sbjct: 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGY 646
Query: 245 -EGARMVRELFQMARSKKACIVFFDEVD 271
EG +L + R + ++ FDE++
Sbjct: 647 EEGG----QLTEAVRRRPYSVILFDEIE 670
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 206 LCYGPPGTGKTLLARAVANRTDACFI-------RVI----GSELV-QKYVGEGARMVREL 253
+ G PG GKT + +A R + R++ GS L KY GE ++ +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 254 FQ-MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312
Q + +S+ I+F DE+ + GA +G ++ N L ARG ++++
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGA----------VDAGNMLKPALARGELRLIG 304
Query: 313 ATN----RPDTLDPALLR 326
AT R DPAL R
Sbjct: 305 ATTLDEYREIEKDPALER 322
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 206 LCYGPPGTGKTLLARAVANRTDACFI-------RVI----GSELV-QKYVGEGARMVREL 253
+ G PG GKT + +A R + R++ GS L KY GE ++ +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 254 FQ-MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312
Q + +S+ I+F DE+ + GA +G ++ N L ARG ++++
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGA----------VDAGNMLKPALARGELRLIG 167
Query: 313 ATN----RPDTLDPALLR 326
AT R DPAL R
Sbjct: 168 ATTLDEYREIEKDPALER 185
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG--EGAR--MVRELFQM 256
P VL GPP +GKT LA +A ++ FI++ + K +G E A+ ++++F
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 257 A-RSKKACIVFFD 268
A +S+ +C+V D
Sbjct: 119 AYKSQLSCVVVDD 131
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 200 DPPKGVLCYGPPGTGKTLLARAVAN 224
+P + +L +GPPG GKT LA +A+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAH 60
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARS 259
+P + +L +GPPG GKT LA +A+ +RV ++K A + L
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAIEKPGDLAAILANSL------ 88
Query: 260 KKACIVFFDEVDAI 273
++ I+F DE+ +
Sbjct: 89 EEGDILFIDEIHRL 102
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARS 259
+P + +L +GPPG GKT LA +A+ +RV ++K A + L
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL-GVNLRVTSGPAIEKPGDLAAILANSL------ 88
Query: 260 KKACIVFFDEVDAI 273
++ I+F DE+ +
Sbjct: 89 EEGDILFIDEIHRL 102
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG--EGAR--MVRELFQM 256
P VL GPP +GKT LA +A ++ FI++ + K +G E A+ ++++F
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 257 A-RSKKACIVFFD 268
A +S+ +C+V D
Sbjct: 120 AYKSQLSCVVVDD 132
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
VL GPPG GKT LA +A+ G LV++ G+ A ++ L ++ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 265 VFFDEVDAIGGA 276
+F DE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
VL GPPG GKT LA +A+ G LV++ G+ A ++ L ++ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 265 VFFDEVDAIGGA 276
+F DE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
VL GPPG GKT LA +A+ G LV++ G+ A ++ L ++ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 265 VFFDEVDAIGGA 276
+F DE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
VL GPPG GKT LA +A+ G LV++ G+ A ++ L ++ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 265 VFFDEVDAIGGA 276
+F DE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 85 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 144
PL V + I+ ED + V+ KFVV ++ +++ G RV +++ I
Sbjct: 37 PLLVGVVSDIL----EDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVN 92
Query: 145 PLPPKIDPSVTMMTVEE 161
LP DP V VEE
Sbjct: 93 VLPTSKDPMVYGFEVEE 109
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
VL GPPG GKT LA +A+ G LV++ G+ A ++ L ++ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 265 VFFDEVDAIGGA 276
+F DE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 85 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQI 144
PL V + I+ ED + V+ KFVV ++ +++ G RV +++ I
Sbjct: 37 PLLVGVVSDIL----EDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVN 92
Query: 145 PLPPKIDPSVTMMTVEE 161
LP DP V VEE
Sbjct: 93 VLPTSKDPMVYGFEVEE 109
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 34/222 (15%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGS---ELVQKYVGEGAR-MVRELFQMARSK 260
+ YG GTGKT L +A N RVI S + Q V + + E M +S
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS- 98
Query: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320
++ D+V + G +RT +E + + +L + P L
Sbjct: 99 -VDLLLLDDVQFLSGK------------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145
Query: 321 DPALLRPGRLDRKVEFGL-----PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375
D RL + E G+ D ++R +I K + N E +R E++ L N+
Sbjct: 146 DGV---SDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENTK- 199
Query: 376 ADIRSVCTEAGMFAIRA----RRKTVTEKDFLDAVNKVIKGY 413
++R + + + ++ RK E+D L + + + Y
Sbjct: 200 -NVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 240
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 34/222 (15%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGS---ELVQKYVGEGAR-MVRELFQMARSK 260
+ YG GTGKT L +A N RVI S + Q V + + E M +S
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS- 97
Query: 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320
++ D+V + G +RT +E + + +L + P L
Sbjct: 98 -VDLLLLDDVQFLSGK------------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144
Query: 321 DPALLRPGRLDRKVEFGL-----PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375
D RL + E G+ D ++R +I K + N E +R E++ L N+
Sbjct: 145 DGV---SDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENTK- 198
Query: 376 ADIRSVCTEAGMFAIRA----RRKTVTEKDFLDAVNKVIKGY 413
++R + + + ++ RK E+D L + + + Y
Sbjct: 199 -NVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 239
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 190 HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223
H + +K + + VL G PGTGK++L +A+A
Sbjct: 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 222
PD + + + ++ ++ EV+ P L EK P L YG GTGKT +AR V
Sbjct: 14 PDYVPDVLPHREAELRRLAEVLA-PALRGEK--------PSNALLYGLTGTGKTAVARLV 64
Query: 223 ANRTDA 228
R +A
Sbjct: 65 LRRLEA 70
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACI 264
VL GPPG G+T LA +A+ G LV++ G+ A ++ L ++ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDV 105
Query: 265 VFFDEVDAIGGA 276
+F DE+ + A
Sbjct: 106 LFIDEIHRLNKA 117
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 172 GCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRTD- 227
G K +++RE L ++ + KLG+ P + G PGTGKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93
Query: 228 ------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEV 270
+ V +LV +Y+G A +E+ + A ++F DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEA 139
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 172 GCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRTD- 227
G K +++RE L ++ + KLG+ P + G PGTGKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 86
Query: 228 ------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEV 270
+ V +LV +Y+G A +E+ + A ++F DE
Sbjct: 87 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEA 132
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 198 GIDPPKGV--LCYGPPGTGKTLLARAVANRTDA 228
++ PKG+ L G PGTGKT +A +A D
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDG 36
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 32/221 (14%)
Query: 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGS---ELVQKYVGEGARMVRELFQMARSKK 261
+ YG GTGKT L +A N RVI S + Q V + F+ K
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNX-YKS 98
Query: 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321
++ D+V + G +RT +E + + +L + P LD
Sbjct: 99 VDLLLLDDVQFLSGK------------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146
Query: 322 PALLRPGRLDRKVEFGL-----PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGA 376
RL + E G+ D ++R +I K + N E +R E++ L N+
Sbjct: 147 GV---SDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENTK-- 199
Query: 377 DIRSVCTEAGMFAIRA----RRKTVTEKDFLDAVNKVIKGY 413
++R + + + ++ RK E+D L + + + Y
Sbjct: 200 NVREIEGKIKLIKLKGFEGLERKERKERDKLXQIVEFVANY 240
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV------GEGA 247
+VK G P +L GPPG GKT A A+A + G ++ G
Sbjct: 40 YVKTGSMPH--LLFAGPPGVGKTTAALALAR-------ELFGENWRHNFLELNASDERGI 90
Query: 248 RMVRE-LFQMARSK-----KACIVFFDEVDAI 273
++RE + + AR+K I+F DE DA+
Sbjct: 91 NVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSEL 238
+ ++ G + VL G PGTGKT +A +A D F + GSE+
Sbjct: 61 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 172 GCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRTD- 227
G K +++RE L ++ + KLG+ P G PGTGKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR-QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLHR 93
Query: 228 ------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEV 270
+ V +LV +Y+G A +E+ + A ++F DE
Sbjct: 94 LGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDEA 139
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 175 EQIEKMREVVELPML----HPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
E E MR + +P + H + F L ++ +G++ GPPG+GKT++
Sbjct: 1018 EAHEVMRPDIVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 21/88 (23%)
Query: 201 PPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK------------YVG- 244
P L GP G GKT LA+ +A T+ IR+ +E ++K YVG
Sbjct: 43 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGY 102
Query: 245 -EGARMVRELFQMARSKKACIVFFDEVD 271
EG +L + R + ++ FD ++
Sbjct: 103 EEGG----QLTEAVRRRPYSVILFDAIE 126
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 222
PD +++ ++QI K+ ++ P+ EK P + YG GTGKT + + V
Sbjct: 15 PDYIPDELPHREDQIRKIASILA-PLYREEK--------PNNIFIYGLTGTGKTAVVKFV 65
Query: 223 ANRTDACFI 231
++ F+
Sbjct: 66 LSKLHKKFL 74
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 30/207 (14%)
Query: 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP--PKGVLCYG 209
P +M+TV EK + K + + E + LP E F + P +L
Sbjct: 2 PGGSMITVNEKEHILEQ-----KYRPSTIDECI-LPAFDKETFKSITSKGKIPHIILHSP 55
Query: 210 PPGTGKTLLARAVANRTDACFIRVIGSELVQKYV-GEGARMVRELFQMARSKKACIVFFD 268
PGTGKT +A+A+ + +A + V GS+ +V G R K ++ D
Sbjct: 56 SPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK---VIVID 112
Query: 269 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPG 328
E D G A E QR + ++ + + +I ++ A N + P R
Sbjct: 113 EFDRSGLA----------ESQRHLRSF---MEAYSSNCSI-IITANNIDGIIKPLQSRC- 157
Query: 329 RLDRKVEFGLPDLESRTQIFKIHTRTM 355
R + FG P E + ++ K R +
Sbjct: 158 ---RVITFGQPTDEDKIEMMKQMIRRL 181
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 175 EQIEKMREVVELPML----HPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218
E E MR + +P + H + F L ++ +G++ GPPG+GKT++
Sbjct: 1237 EAHEVMRPDIVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 337 GLPDLESRTQIFKIHTRTMNC---ERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 393
G PDL +RT +F+I+ C + D R L + +G+DI V +A M IR
Sbjct: 1 GSPDLAARTTMFEINVGDTPCVLTKEDYR--TLGAMTEGYSGSDIAVVVKDALMQPIRKI 58
Query: 394 RKTVTEKD 401
+ KD
Sbjct: 59 QSATHFKD 66
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 203 KGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSEL 238
+ VL G PGTGKT +A A D F + GSE+
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEI 123
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 21/88 (23%)
Query: 201 PPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK------------YVG- 244
P L GP G GKT LA+ +A T+ IR+ +E +K YVG
Sbjct: 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIRIDXTEYXEKHAVSRLIGAPPGYVGY 105
Query: 245 -EGARMVRELFQMARSKKACIVFFDEVD 271
EG +L + R + ++ FD ++
Sbjct: 106 EEGG----QLTEAVRRRPYSVILFDAIE 129
>pdb|2HGS|A Chain A, Human Glutathione Synthetase
Length = 474
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 283 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVE------- 335
GG+N M++ + QL + R + +LM P+ + LLRPG R V+
Sbjct: 370 GGNNLYGEEMVQALKQLKDSEERASY-ILMEKIEPEPFENCLLRPGSPARVVQCISELGI 428
Query: 336 FGLPDLESRTQIFKIHT 352
FG+ + +T + H
Sbjct: 429 FGVYVRQEKTLVMNKHV 445
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 203 KGVLCYGPPGTGKTLLARAVA 223
+ + YGPPG GKT A VA
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVA 98
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 221 AVANRTDAC-FIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD 279
AV NRT A F++ +G+++V A+ VRE A VD IGG FD
Sbjct: 189 AVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMV-------VDPIGGPAFD 241
Query: 280 DGV 282
D V
Sbjct: 242 DAV 244
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 232 RVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 291
R IG E+ + A+ V + ++R++K+C DE+ + G G GD +
Sbjct: 54 RGIGREIAKML----AKSVSHVICISRTQKSCDSVVDEIKSFGYE--SSGYAGDVSKKEE 107
Query: 292 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 326
+ E++N++ N+ +L+ N T D LR
Sbjct: 108 ISEVINKI--LTEHKNVDILV-NNAGITRDNLFLR 139
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 217 LLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276
++A+ A ++ + I S L K + E A+ + E + R + F +++A G
Sbjct: 225 VVAQLAAIGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAVRELRD---FITQIEAYG-- 279
Query: 277 RFDDGVGGDNEVQRTMLEIVN-QLDGFDARGNIKVLMATNRPDTL 320
F D V D V R + +GFD GN + L R D L
Sbjct: 280 -FGDWVIFDASVVRGLAYYTGIVFEGFDRDGNFRALCGGGRYDNL 323
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 203 KGVLCY--GPPGTGKTLLARAVAN--RTDACFIRVIGSELVQKYVGEGARMVRE 252
KG++ + G PG+GKT +A +A+ + + + V+ + + V EGA RE
Sbjct: 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTRE 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,874,455
Number of Sequences: 62578
Number of extensions: 542541
Number of successful extensions: 1926
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 124
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)