Query 014332
Match_columns 426
No_of_seqs 493 out of 3041
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0729 26S proteasome regulat 100.0 4E-103 8E-108 719.6 30.2 420 7-426 16-435 (435)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-92 2.8E-97 675.5 36.2 395 24-422 11-405 (406)
3 KOG0728 26S proteasome regulat 100.0 5E-75 1.1E-79 529.7 26.7 376 33-417 21-396 (404)
4 KOG0652 26S proteasome regulat 100.0 3.9E-72 8.5E-77 513.3 26.0 375 29-412 20-415 (424)
5 KOG0726 26S proteasome regulat 100.0 9E-72 2E-76 517.5 24.4 378 16-413 53-430 (440)
6 KOG0727 26S proteasome regulat 100.0 6.2E-71 1.3E-75 503.4 26.3 364 34-413 37-400 (408)
7 PTZ00454 26S protease regulato 100.0 4E-60 8.8E-65 477.2 35.6 362 35-412 28-389 (398)
8 PTZ00361 26 proteosome regulat 100.0 5.1E-59 1.1E-63 472.1 35.6 333 75-412 95-427 (438)
9 PRK03992 proteasome-activating 100.0 6.7E-56 1.4E-60 448.1 37.0 373 34-422 13-385 (389)
10 KOG0651 26S proteasome regulat 100.0 8E-58 1.7E-62 428.2 18.1 324 82-410 51-374 (388)
11 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-56 2.5E-61 456.4 23.7 262 149-413 415-678 (693)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 7.2E-55 1.6E-59 437.6 24.8 262 149-413 492-773 (802)
13 TIGR01242 26Sp45 26S proteasom 100.0 4.8E-53 1E-57 424.9 36.2 359 35-409 5-363 (364)
14 KOG0734 AAA+-type ATPase conta 100.0 3.8E-51 8.2E-56 405.2 21.5 253 161-417 297-549 (752)
15 KOG0736 Peroxisome assembly fa 100.0 1.7E-49 3.7E-54 407.5 24.6 254 158-413 662-936 (953)
16 KOG0731 AAA+-type ATPase conta 100.0 1.4E-48 3.1E-53 408.2 25.3 256 160-416 303-560 (774)
17 KOG0733 Nuclear AAA ATPase (VC 100.0 4.2E-48 9.2E-53 388.8 21.8 225 163-392 185-414 (802)
18 KOG0738 AAA+-type ATPase [Post 100.0 1.2E-47 2.6E-52 368.9 19.3 251 158-413 202-473 (491)
19 COG0465 HflB ATP-dependent Zn 100.0 7E-47 1.5E-51 389.7 22.2 260 158-418 140-399 (596)
20 TIGR03689 pup_AAA proteasome A 100.0 3.1E-44 6.7E-49 368.8 32.0 315 102-421 119-490 (512)
21 COG1223 Predicted ATPase (AAA+ 100.0 3.3E-44 7.1E-49 329.3 19.9 242 160-409 113-355 (368)
22 KOG0739 AAA+-type ATPase [Post 100.0 2.6E-44 5.6E-49 335.4 12.6 233 154-392 119-353 (439)
23 TIGR01243 CDC48 AAA family ATP 100.0 1E-42 2.2E-47 378.5 26.7 257 156-414 441-715 (733)
24 KOG0735 AAA+-type ATPase [Post 100.0 7.6E-43 1.6E-47 355.7 23.6 229 161-392 660-888 (952)
25 COG0464 SpoVK ATPases of the A 100.0 1.3E-42 2.8E-47 362.7 24.4 251 159-412 233-486 (494)
26 TIGR01241 FtsH_fam ATP-depende 100.0 7.6E-42 1.6E-46 356.5 25.8 256 158-414 45-300 (495)
27 KOG0737 AAA+-type ATPase [Post 100.0 4.6E-42 1E-46 330.3 19.3 246 162-412 86-362 (386)
28 CHL00176 ftsH cell division pr 100.0 9.6E-41 2.1E-45 353.2 25.5 254 161-415 176-429 (638)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 1.2E-39 2.7E-44 335.2 25.1 243 162-412 222-466 (489)
30 PRK10733 hflB ATP-dependent me 100.0 4.4E-38 9.5E-43 336.1 25.8 254 161-415 145-398 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.6E-38 2.1E-42 346.6 23.4 218 190-416 1618-1884(2281)
32 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-37 7.2E-42 314.4 21.3 239 163-412 180-419 (693)
33 KOG0732 AAA+-type ATPase conta 100.0 3E-37 6.5E-42 330.7 19.1 252 161-415 258-531 (1080)
34 KOG0741 AAA+-type ATPase [Post 100.0 2.1E-37 4.5E-42 307.4 13.5 254 160-414 211-495 (744)
35 KOG0740 AAA+-type ATPase [Post 100.0 2E-36 4.4E-41 300.9 14.6 256 153-414 138-409 (428)
36 TIGR01243 CDC48 AAA family ATP 100.0 4.3E-35 9.3E-40 318.8 25.4 249 162-413 172-439 (733)
37 PLN00020 ribulose bisphosphate 100.0 3.7E-33 8E-38 271.5 20.3 205 162-373 109-331 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 5.9E-23 1.3E-27 199.5 20.7 211 168-391 23-256 (287)
39 TIGR02880 cbbX_cfxQ probable R 99.9 1.9E-22 4.1E-27 195.9 19.7 210 169-391 23-255 (284)
40 TIGR02881 spore_V_K stage V sp 99.9 1.2E-21 2.7E-26 188.3 20.8 212 167-392 5-241 (261)
41 KOG0743 AAA+-type ATPase [Post 99.9 6.9E-22 1.5E-26 195.9 17.5 212 159-380 192-411 (457)
42 PF00004 AAA: ATPase family as 99.9 3.5E-22 7.5E-27 170.9 13.2 130 205-338 1-132 (132)
43 KOG0736 Peroxisome assembly fa 99.9 2.1E-21 4.6E-26 201.0 20.5 245 167-421 400-665 (953)
44 KOG0742 AAA+-type ATPase [Post 99.9 2.3E-21 4.9E-26 188.5 19.0 235 163-409 350-612 (630)
45 PF05496 RuvB_N: Holliday junc 99.9 2.9E-21 6.4E-26 177.4 18.7 197 160-386 16-226 (233)
46 KOG0744 AAA+-type ATPase [Post 99.9 1.1E-21 2.5E-26 185.8 11.9 238 165-410 139-415 (423)
47 PRK00080 ruvB Holliday junctio 99.9 3.1E-20 6.8E-25 184.4 21.6 221 159-409 16-250 (328)
48 KOG0735 AAA+-type ATPase [Post 99.9 2.8E-20 6.1E-25 191.2 19.6 211 200-411 429-650 (952)
49 TIGR00635 ruvB Holliday juncti 99.9 6E-20 1.3E-24 180.4 20.9 214 166-409 2-229 (305)
50 COG2255 RuvB Holliday junction 99.8 1.4E-19 2.9E-24 169.6 19.7 219 161-409 19-251 (332)
51 COG0464 SpoVK ATPases of the A 99.8 1.4E-19 3E-24 189.4 21.7 222 186-412 2-229 (494)
52 COG2256 MGS1 ATPase related to 99.8 2E-19 4.4E-24 175.8 18.9 207 160-411 16-240 (436)
53 TIGR02902 spore_lonB ATP-depen 99.8 8.1E-20 1.8E-24 191.7 16.0 248 129-408 26-331 (531)
54 TIGR02639 ClpA ATP-dependent C 99.8 3E-19 6.4E-24 194.5 19.1 225 160-409 174-429 (731)
55 TIGR00763 lon ATP-dependent pr 99.8 7E-19 1.5E-23 192.6 19.2 221 169-407 321-584 (775)
56 PRK14956 DNA polymerase III su 99.8 1.7E-18 3.7E-23 176.4 19.8 207 158-406 8-243 (484)
57 PRK04195 replication factor C 99.8 3.3E-18 7.1E-23 178.3 21.4 213 156-406 2-222 (482)
58 PRK11034 clpA ATP-dependent Cl 99.8 1.4E-18 3E-23 187.7 17.9 223 162-409 180-433 (758)
59 PRK07003 DNA polymerase III su 99.8 3.5E-18 7.5E-23 180.4 20.3 205 158-404 6-239 (830)
60 PRK12402 replication factor C 99.8 1.5E-17 3.3E-22 165.2 22.3 214 156-407 3-247 (337)
61 PRK12323 DNA polymerase III su 99.8 2.2E-18 4.8E-23 179.8 16.8 204 158-403 6-243 (700)
62 PRK14962 DNA polymerase III su 99.8 5.5E-18 1.2E-22 174.8 19.6 207 159-407 5-240 (472)
63 PRK14961 DNA polymerase III su 99.8 9.2E-18 2E-22 168.8 19.6 208 158-407 6-242 (363)
64 PRK14960 DNA polymerase III su 99.8 8.5E-18 1.8E-22 175.8 19.8 206 159-406 6-240 (702)
65 PLN03025 replication factor C 99.8 1.1E-17 2.4E-22 165.5 19.8 204 157-404 2-218 (319)
66 PRK13342 recombination factor 99.8 1.3E-17 2.8E-22 170.6 20.6 205 159-410 3-220 (413)
67 PRK14958 DNA polymerase III su 99.8 5.2E-18 1.1E-22 176.7 18.0 208 158-407 6-242 (509)
68 PRK07994 DNA polymerase III su 99.8 1.7E-17 3.6E-22 175.5 20.5 206 159-406 7-241 (647)
69 PRK06645 DNA polymerase III su 99.8 2.5E-17 5.5E-22 170.7 20.2 218 157-407 10-254 (507)
70 PRK14949 DNA polymerase III su 99.8 2.4E-17 5.2E-22 177.0 20.4 190 159-386 7-225 (944)
71 TIGR02928 orc1/cdc6 family rep 99.8 5.1E-17 1.1E-21 163.4 21.3 222 166-410 13-275 (365)
72 PHA02544 44 clamp loader, smal 99.8 6.8E-17 1.5E-21 159.5 19.9 210 155-404 8-226 (316)
73 PRK08691 DNA polymerase III su 99.7 4.9E-17 1.1E-21 171.5 19.5 208 158-407 6-242 (709)
74 PRK14964 DNA polymerase III su 99.7 5.5E-17 1.2E-21 167.0 18.4 206 159-406 4-238 (491)
75 PRK00411 cdc6 cell division co 99.7 1.4E-16 3E-21 162.0 20.7 222 166-409 28-282 (394)
76 PTZ00112 origin recognition co 99.7 1.1E-16 2.3E-21 169.9 20.1 219 165-410 752-1007(1164)
77 TIGR03345 VI_ClpV1 type VI sec 99.7 1.3E-16 2.7E-21 175.5 21.5 223 160-408 179-430 (852)
78 PRK14957 DNA polymerase III su 99.7 1.4E-16 3.1E-21 166.1 20.3 207 158-406 6-241 (546)
79 PRK14963 DNA polymerase III su 99.7 1.8E-16 3.8E-21 164.9 20.9 204 160-406 6-237 (504)
80 PRK14951 DNA polymerase III su 99.7 9.3E-17 2E-21 169.5 18.9 207 158-406 6-246 (618)
81 TIGR00362 DnaA chromosomal rep 99.7 2.4E-16 5.2E-21 161.0 21.3 219 162-409 104-337 (405)
82 PRK00149 dnaA chromosomal repl 99.7 1.8E-16 3.8E-21 164.1 20.0 221 161-410 115-350 (450)
83 PRK14952 DNA polymerase III su 99.7 2.2E-16 4.7E-21 166.2 20.5 206 160-406 5-241 (584)
84 PRK07764 DNA polymerase III su 99.7 1.6E-16 3.4E-21 173.1 20.0 206 158-404 5-241 (824)
85 PRK14969 DNA polymerase III su 99.7 9.4E-17 2E-21 168.2 17.6 207 159-407 7-242 (527)
86 KOG0989 Replication factor C, 99.7 8.2E-17 1.8E-21 152.4 15.0 191 156-385 24-231 (346)
87 PRK05563 DNA polymerase III su 99.7 3.3E-16 7.2E-21 165.2 21.3 204 160-405 8-240 (559)
88 COG0466 Lon ATP-dependent Lon 99.7 6.6E-17 1.4E-21 167.7 14.9 227 169-413 324-588 (782)
89 PRK05896 DNA polymerase III su 99.7 1.9E-16 4.1E-21 165.5 18.4 207 157-405 5-240 (605)
90 PRK14959 DNA polymerase III su 99.7 2.3E-16 5E-21 165.6 19.0 207 158-406 6-241 (624)
91 PRK07133 DNA polymerase III su 99.7 2.5E-16 5.4E-21 167.6 19.4 213 157-405 7-239 (725)
92 PRK06893 DNA replication initi 99.7 4.7E-16 1E-20 146.7 19.2 211 161-406 9-227 (229)
93 TIGR02397 dnaX_nterm DNA polym 99.7 2.7E-16 5.8E-21 157.6 18.5 208 157-406 3-239 (355)
94 PRK13341 recombination factor 99.7 2.9E-16 6.3E-21 169.1 19.6 212 157-410 17-248 (725)
95 PRK00440 rfc replication facto 99.7 5.2E-16 1.1E-20 153.0 19.8 208 156-407 5-224 (319)
96 TIGR03420 DnaA_homol_Hda DnaA 99.7 6.4E-16 1.4E-20 145.0 19.1 203 164-406 11-225 (226)
97 COG0542 clpA ATP-binding subun 99.7 1.5E-17 3.2E-22 176.8 7.8 164 170-354 493-707 (786)
98 PRK08084 DNA replication initi 99.7 1.7E-15 3.6E-20 143.5 21.0 207 161-406 15-233 (235)
99 PRK14953 DNA polymerase III su 99.7 5.8E-16 1.3E-20 160.5 19.4 207 158-406 6-241 (486)
100 PRK08903 DnaA regulatory inact 99.7 1.6E-15 3.5E-20 142.7 20.6 203 161-407 11-224 (227)
101 PRK08451 DNA polymerase III su 99.7 9.4E-16 2E-20 159.3 20.4 206 158-405 4-238 (535)
102 PRK10865 protein disaggregatio 99.7 3.2E-16 7E-21 172.8 17.7 172 160-357 170-359 (857)
103 PRK07940 DNA polymerase III su 99.7 4.2E-16 9E-21 157.5 16.9 184 166-380 3-213 (394)
104 PRK14965 DNA polymerase III su 99.7 4.8E-16 1E-20 164.7 18.0 205 159-405 7-240 (576)
105 PRK14970 DNA polymerase III su 99.7 1.2E-15 2.7E-20 153.8 19.7 214 157-406 6-230 (367)
106 PRK08727 hypothetical protein; 99.7 3.7E-15 7.9E-20 141.0 21.6 208 161-408 12-230 (233)
107 PRK06305 DNA polymerase III su 99.7 1.5E-15 3.1E-20 156.5 20.0 207 158-406 7-243 (451)
108 KOG2028 ATPase related to the 99.7 7.4E-16 1.6E-20 148.6 16.3 210 159-409 129-368 (554)
109 PRK09111 DNA polymerase III su 99.7 2.2E-15 4.7E-20 159.4 21.4 216 156-407 12-255 (598)
110 PRK14086 dnaA chromosomal repl 99.7 2E-15 4.4E-20 157.9 20.6 221 161-410 281-516 (617)
111 CHL00095 clpC Clp protease ATP 99.7 1.3E-15 2.7E-20 168.1 19.9 202 162-389 173-401 (821)
112 KOG2004 Mitochondrial ATP-depe 99.7 5.2E-16 1.1E-20 160.3 15.2 167 168-352 411-596 (906)
113 PRK06647 DNA polymerase III su 99.7 1.6E-15 3.4E-20 159.7 19.2 206 159-406 7-241 (563)
114 PRK14955 DNA polymerase III su 99.7 1E-15 2.3E-20 155.7 16.9 210 159-406 7-254 (397)
115 TIGR03346 chaperone_ClpB ATP-d 99.7 2.9E-15 6.2E-20 165.7 21.1 204 160-389 165-396 (852)
116 PRK14088 dnaA chromosomal repl 99.7 3.4E-15 7.5E-20 153.5 18.9 221 161-410 98-333 (440)
117 PRK10787 DNA-binding ATP-depen 99.7 2.8E-15 6E-20 163.3 19.0 221 169-408 323-581 (784)
118 PRK11034 clpA ATP-dependent Cl 99.7 6E-16 1.3E-20 167.4 13.6 163 170-353 460-667 (758)
119 TIGR02640 gas_vesic_GvpN gas v 99.6 4.7E-15 1E-19 142.7 17.3 190 201-411 20-259 (262)
120 PRK05342 clpX ATP-dependent pr 99.6 5.8E-15 1.3E-19 149.9 18.3 220 170-391 73-380 (412)
121 PRK14954 DNA polymerase III su 99.6 8.6E-15 1.9E-19 155.1 19.9 216 159-406 7-254 (620)
122 PRK14948 DNA polymerase III su 99.6 9.9E-15 2.1E-19 155.3 20.4 190 158-385 6-226 (620)
123 PRK12422 chromosomal replicati 99.6 1.2E-14 2.7E-19 149.2 20.4 226 162-411 105-345 (445)
124 TIGR00390 hslU ATP-dependent p 99.6 6.8E-15 1.5E-19 147.1 17.1 240 170-411 14-432 (441)
125 PRK05642 DNA replication initi 99.6 4.3E-14 9.2E-19 133.8 21.4 179 202-406 45-232 (234)
126 TIGR02639 ClpA ATP-dependent C 99.6 4.9E-15 1.1E-19 161.6 17.1 199 169-388 455-710 (731)
127 PRK14087 dnaA chromosomal repl 99.6 2.7E-14 6E-19 147.1 21.1 190 202-409 141-348 (450)
128 PRK14950 DNA polymerase III su 99.6 1.5E-14 3.3E-19 153.9 19.5 206 159-406 7-242 (585)
129 CHL00095 clpC Clp protease ATP 99.6 2.2E-15 4.7E-20 166.2 12.9 165 169-354 510-734 (821)
130 PRK13407 bchI magnesium chelat 99.6 7.1E-15 1.5E-19 145.2 15.3 222 162-411 2-308 (334)
131 COG1474 CDC6 Cdc6-related prot 99.6 5.5E-14 1.2E-18 140.8 21.8 217 168-409 17-265 (366)
132 PF00308 Bac_DnaA: Bacterial d 99.6 2.3E-14 4.9E-19 134.2 17.1 199 163-389 3-216 (219)
133 PRK05201 hslU ATP-dependent pr 99.6 1.4E-14 3.1E-19 144.9 16.3 239 170-410 17-433 (443)
134 TIGR02903 spore_lon_C ATP-depe 99.6 5.7E-14 1.2E-18 149.9 21.7 220 161-409 147-430 (615)
135 COG1224 TIP49 DNA helicase TIP 99.6 4.7E-14 1E-18 136.1 18.2 128 262-409 292-432 (450)
136 COG2812 DnaX DNA polymerase II 99.6 9.6E-15 2.1E-19 150.2 13.7 209 160-404 8-239 (515)
137 PRK14971 DNA polymerase III su 99.6 5E-14 1.1E-18 149.9 19.4 207 158-406 7-243 (614)
138 PRK06620 hypothetical protein; 99.6 6.6E-14 1.4E-18 130.6 17.4 196 161-406 9-213 (214)
139 CHL00081 chlI Mg-protoporyphyr 99.6 2.3E-14 5.1E-19 141.9 14.7 226 162-413 11-326 (350)
140 TIGR00382 clpX endopeptidase C 99.6 5.1E-14 1.1E-18 142.4 16.5 221 170-392 79-387 (413)
141 PF05673 DUF815: Protein of un 99.6 1.7E-13 3.6E-18 127.9 17.9 169 159-358 18-213 (249)
142 TIGR02030 BchI-ChlI magnesium 99.6 5E-14 1.1E-18 139.5 15.1 218 166-412 2-312 (337)
143 COG0593 DnaA ATPase involved i 99.6 1.9E-13 4.1E-18 137.0 19.3 195 201-414 112-318 (408)
144 TIGR03345 VI_ClpV1 type VI sec 99.5 1.6E-13 3.4E-18 151.2 18.9 197 169-387 567-828 (852)
145 TIGR03346 chaperone_ClpB ATP-d 99.5 1.9E-13 4.1E-18 151.4 19.1 201 168-389 565-825 (852)
146 PRK10865 protein disaggregatio 99.5 2.6E-13 5.5E-18 149.9 19.9 167 167-354 567-781 (857)
147 PRK09087 hypothetical protein; 99.5 6.1E-13 1.3E-17 125.1 18.3 173 202-409 44-222 (226)
148 cd00009 AAA The AAA+ (ATPases 99.5 2.4E-13 5.3E-18 116.8 14.2 140 172-337 2-150 (151)
149 TIGR01650 PD_CobS cobaltochela 99.5 6.4E-14 1.4E-18 136.8 10.4 141 200-354 62-235 (327)
150 TIGR02442 Cob-chelat-sub cobal 99.5 3E-13 6.5E-18 145.2 15.9 218 166-412 2-307 (633)
151 COG3829 RocR Transcriptional r 99.5 1.1E-13 2.4E-18 140.7 10.2 214 162-403 239-491 (560)
152 KOG1969 DNA replication checkp 99.5 1.8E-12 3.8E-17 134.9 18.6 215 156-394 259-520 (877)
153 TIGR00764 lon_rel lon-related 99.5 1.7E-12 3.7E-17 138.3 18.8 134 263-409 219-391 (608)
154 PHA02244 ATPase-like protein 99.5 1.5E-12 3.3E-17 128.6 16.8 129 200-344 117-266 (383)
155 PRK09112 DNA polymerase III su 99.5 3.1E-12 6.8E-17 127.7 19.0 188 162-382 17-241 (351)
156 PRK13531 regulatory ATPase Rav 99.5 4E-12 8.6E-17 129.8 19.6 213 170-411 22-285 (498)
157 COG2204 AtoC Response regulato 99.5 5E-13 1.1E-17 135.8 12.9 209 165-403 138-385 (464)
158 COG0714 MoxR-like ATPases [Gen 99.4 3.5E-12 7.7E-17 126.8 18.0 209 170-410 26-297 (329)
159 TIGR00368 Mg chelatase-related 99.4 2.8E-12 6.1E-17 133.3 17.0 213 164-407 188-497 (499)
160 PRK07471 DNA polymerase III su 99.4 5.1E-12 1.1E-16 126.8 17.9 180 162-375 13-233 (365)
161 TIGR03015 pepcterm_ATPase puta 99.4 9.1E-12 2E-16 119.9 18.3 193 202-410 43-267 (269)
162 TIGR01817 nifA Nif-specific re 99.4 3.3E-12 7.1E-17 135.1 15.2 209 163-403 191-439 (534)
163 KOG1942 DNA helicase, TBP-inte 99.4 1.3E-11 2.9E-16 116.3 17.3 129 262-410 297-439 (456)
164 KOG0991 Replication factor C, 99.4 4.2E-12 9E-17 116.3 13.1 186 157-384 16-214 (333)
165 TIGR02329 propionate_PrpR prop 99.4 9.5E-13 2.1E-17 137.7 10.3 216 164-405 208-466 (526)
166 TIGR00602 rad24 checkpoint pro 99.4 9.8E-12 2.1E-16 131.9 17.9 209 155-390 71-329 (637)
167 PRK05564 DNA polymerase III su 99.4 7.9E-12 1.7E-16 123.4 15.9 171 166-374 2-184 (313)
168 TIGR02974 phageshock_pspF psp 99.4 8.5E-12 1.8E-16 123.8 15.8 201 170-401 1-242 (329)
169 smart00350 MCM minichromosome 99.4 9.4E-12 2E-16 130.6 16.8 193 203-411 237-506 (509)
170 PRK10820 DNA-binding transcrip 99.4 1.2E-11 2.6E-16 130.1 17.5 210 162-402 198-447 (520)
171 PF06068 TIP49: TIP49 C-termin 99.4 4.4E-12 9.5E-17 124.3 13.2 103 262-384 279-394 (398)
172 PRK11608 pspF phage shock prot 99.4 9.8E-12 2.1E-16 123.3 15.7 194 167-388 5-239 (326)
173 PRK15424 propionate catabolism 99.4 2.5E-12 5.4E-17 134.5 11.9 208 165-402 216-478 (538)
174 TIGR00678 holB DNA polymerase 99.4 1.1E-11 2.4E-16 113.2 13.9 144 200-372 12-183 (188)
175 PRK11388 DNA-binding transcrip 99.4 1.5E-11 3.4E-16 132.7 17.1 212 164-406 321-568 (638)
176 COG1221 PspF Transcriptional r 99.4 2.7E-12 5.9E-17 128.4 9.9 198 164-390 74-310 (403)
177 PF05621 TniB: Bacterial TniB 99.3 3.8E-11 8.3E-16 115.5 16.7 190 201-405 60-285 (302)
178 PRK07399 DNA polymerase III su 99.3 2.7E-11 5.8E-16 119.4 15.9 183 166-383 2-223 (314)
179 TIGR02031 BchD-ChlD magnesium 99.3 3.2E-11 6.9E-16 128.3 17.1 197 203-412 17-261 (589)
180 PRK04132 replication factor C 99.3 5.1E-11 1.1E-15 129.6 18.7 172 202-404 564-749 (846)
181 COG0470 HolB ATPase involved i 99.3 2.5E-11 5.4E-16 119.8 15.0 149 169-349 2-178 (325)
182 COG0542 clpA ATP-binding subun 99.3 5.7E-11 1.2E-15 127.0 18.4 205 160-389 162-393 (786)
183 PF07728 AAA_5: AAA domain (dy 99.3 2.1E-12 4.6E-17 111.9 5.6 112 204-330 1-139 (139)
184 COG3604 FhlA Transcriptional r 99.3 5.8E-12 1.3E-16 126.7 9.4 201 164-389 219-456 (550)
185 COG2607 Predicted ATPase (AAA+ 99.3 1.9E-10 4.1E-15 106.1 17.9 168 160-358 52-245 (287)
186 smart00382 AAA ATPases associa 99.3 3.2E-11 6.9E-16 102.4 12.0 126 202-339 2-147 (148)
187 PF00158 Sigma54_activat: Sigm 99.3 3.7E-11 7.9E-16 107.8 12.4 123 170-317 1-144 (168)
188 PRK05022 anaerobic nitric oxid 99.3 6.8E-11 1.5E-15 124.3 16.5 197 166-390 185-421 (509)
189 PRK11331 5-methylcytosine-spec 99.3 3.6E-11 7.7E-16 121.9 13.7 144 167-338 174-357 (459)
190 PF01078 Mg_chelatase: Magnesi 99.3 4.6E-12 9.9E-17 116.0 6.6 146 166-342 1-205 (206)
191 PRK09862 putative ATP-dependen 99.3 8.1E-11 1.8E-15 122.0 16.3 213 165-408 188-491 (506)
192 PRK15429 formate hydrogenlyase 99.3 9.5E-11 2.1E-15 127.5 17.4 197 164-389 372-609 (686)
193 PF07724 AAA_2: AAA domain (Cd 99.3 1.5E-11 3.2E-16 110.7 8.3 115 201-317 2-130 (171)
194 PRK05707 DNA polymerase III su 99.3 1.1E-10 2.4E-15 115.6 15.0 151 200-375 20-198 (328)
195 PRK08058 DNA polymerase III su 99.2 5.5E-11 1.2E-15 118.1 12.3 149 166-350 3-180 (329)
196 COG1220 HslU ATP-dependent pro 99.2 4E-11 8.8E-16 115.2 10.5 85 263-349 252-346 (444)
197 KOG2680 DNA helicase TIP49, TB 99.2 3.7E-10 8E-15 107.0 16.6 131 262-412 289-432 (454)
198 PRK13765 ATP-dependent proteas 99.2 9.6E-11 2.1E-15 124.7 14.2 133 263-408 228-399 (637)
199 KOG1514 Origin recognition com 99.2 7.6E-10 1.7E-14 115.3 16.7 194 203-411 423-657 (767)
200 smart00763 AAA_PrkA PrkA AAA d 99.2 7E-10 1.5E-14 109.8 14.9 167 166-354 48-329 (361)
201 PRK08116 hypothetical protein; 99.2 5.5E-10 1.2E-14 107.8 13.9 124 201-341 113-251 (268)
202 COG1239 ChlI Mg-chelatase subu 99.1 8.5E-10 1.9E-14 109.7 14.7 217 164-410 13-323 (423)
203 PF13177 DNA_pol3_delta2: DNA 99.1 4.6E-10 1E-14 100.2 11.6 134 172-339 1-161 (162)
204 KOG1051 Chaperone HSP104 and r 99.1 8.8E-10 1.9E-14 119.5 15.8 129 169-316 563-710 (898)
205 KOG2035 Replication factor C, 99.1 2.9E-09 6.3E-14 100.1 16.8 184 157-372 2-220 (351)
206 PF03215 Rad17: Rad17 cell cyc 99.1 2.1E-09 4.6E-14 112.2 17.7 212 154-390 5-269 (519)
207 KOG0990 Replication factor C, 99.1 3.9E-10 8.5E-15 108.0 11.0 168 152-355 25-206 (360)
208 TIGR02915 PEP_resp_reg putativ 99.1 3.9E-10 8.5E-15 116.6 12.0 203 166-402 137-382 (445)
209 PRK06871 DNA polymerase III su 99.1 2.4E-09 5.2E-14 105.6 16.8 144 173-351 7-178 (325)
210 PF07726 AAA_3: ATPase family 99.1 2.8E-11 6E-16 102.2 2.4 107 204-330 1-129 (131)
211 PTZ00111 DNA replication licen 99.1 2.8E-09 6E-14 115.8 17.6 198 202-415 492-810 (915)
212 KOG2227 Pre-initiation complex 99.1 3.8E-09 8.3E-14 105.8 16.1 223 168-413 150-419 (529)
213 PRK07993 DNA polymerase III su 99.1 2.6E-09 5.7E-14 106.1 14.9 165 173-375 7-199 (334)
214 PRK12377 putative replication 99.1 1E-09 2.3E-14 104.3 11.5 101 202-317 101-206 (248)
215 PRK06964 DNA polymerase III su 99.1 1.3E-09 2.7E-14 108.3 12.4 133 200-351 19-203 (342)
216 PRK10923 glnG nitrogen regulat 99.1 1.9E-09 4E-14 112.3 14.4 207 166-406 136-385 (469)
217 PRK08769 DNA polymerase III su 99.1 4.3E-09 9.3E-14 103.6 15.7 167 173-375 9-203 (319)
218 KOG0745 Putative ATP-dependent 99.0 5.1E-09 1.1E-13 103.8 15.7 95 203-297 227-330 (564)
219 PF14532 Sigma54_activ_2: Sigm 99.0 1.8E-10 3.9E-15 99.9 4.9 107 171-317 1-110 (138)
220 COG0606 Predicted ATPase with 99.0 3.5E-10 7.6E-15 114.0 7.3 211 164-408 175-484 (490)
221 PRK08181 transposase; Validate 99.0 2.3E-09 5E-14 103.2 12.5 101 201-317 105-209 (269)
222 PRK11361 acetoacetate metaboli 99.0 4.5E-09 9.8E-14 109.0 15.3 207 166-406 141-390 (457)
223 PRK07952 DNA replication prote 99.0 2.9E-09 6.2E-14 101.1 12.0 100 203-317 100-205 (244)
224 COG1219 ClpX ATP-dependent pro 99.0 3E-09 6.6E-14 101.8 11.5 95 203-297 98-201 (408)
225 PRK06835 DNA replication prote 99.0 4.2E-09 9E-14 104.3 12.0 122 202-340 183-318 (329)
226 PRK06090 DNA polymerase III su 99.0 9.5E-09 2.1E-13 101.1 14.3 144 173-350 8-178 (319)
227 COG3283 TyrR Transcriptional r 99.0 3.4E-09 7.3E-14 102.8 10.1 205 160-389 196-432 (511)
228 PRK15115 response regulator Gl 99.0 2.2E-08 4.7E-13 103.6 16.9 202 169-405 135-380 (444)
229 KOG0741 AAA+-type ATPase [Post 98.9 4.5E-09 9.7E-14 106.4 11.0 143 202-350 538-684 (744)
230 TIGR01818 ntrC nitrogen regula 98.9 1.4E-08 2.9E-13 105.6 14.2 205 168-406 134-381 (463)
231 PF01637 Arch_ATPase: Archaeal 98.9 1.8E-08 3.8E-13 94.0 12.7 183 171-379 2-232 (234)
232 PF13173 AAA_14: AAA domain 98.9 1.5E-08 3.3E-13 86.7 10.9 119 202-343 2-126 (128)
233 PRK08699 DNA polymerase III su 98.9 1E-08 2.2E-13 101.6 11.2 131 200-350 19-183 (325)
234 PRK06526 transposase; Provisio 98.9 6.9E-09 1.5E-13 99.2 9.2 102 200-317 96-201 (254)
235 PRK06921 hypothetical protein; 98.8 3E-08 6.4E-13 95.6 12.1 105 201-317 116-225 (266)
236 PRK10365 transcriptional regul 98.8 7.2E-08 1.6E-12 99.5 15.1 204 169-406 140-386 (441)
237 PRK13406 bchD magnesium chelat 98.8 3.7E-08 7.9E-13 104.4 13.0 193 203-412 26-253 (584)
238 COG1484 DnaC DNA replication p 98.8 4E-08 8.6E-13 94.1 11.9 117 173-317 88-209 (254)
239 PRK09183 transposase/IS protei 98.8 2.4E-08 5.1E-13 96.0 9.7 103 200-317 100-206 (259)
240 PRK08939 primosomal protein Dn 98.8 3.1E-08 6.7E-13 97.3 10.5 102 201-317 155-261 (306)
241 PF01695 IstB_IS21: IstB-like 98.8 1.3E-08 2.8E-13 92.3 6.9 102 200-317 45-150 (178)
242 KOG1970 Checkpoint RAD17-RFC c 98.8 4.1E-07 8.9E-12 93.0 17.6 220 151-389 65-320 (634)
243 PRK05917 DNA polymerase III su 98.7 2.7E-07 5.9E-12 89.3 12.4 131 175-339 4-154 (290)
244 COG1241 MCM2 Predicted ATPase 98.7 4.1E-07 8.8E-12 96.9 14.6 195 203-414 320-597 (682)
245 COG3267 ExeA Type II secretory 98.6 3.3E-06 7.1E-11 79.2 17.9 183 204-402 53-266 (269)
246 PF12774 AAA_6: Hydrolytic ATP 98.6 4.9E-07 1.1E-11 85.2 12.6 159 202-387 32-225 (231)
247 COG3284 AcoR Transcriptional a 98.6 6.6E-08 1.4E-12 100.5 7.1 171 201-389 335-540 (606)
248 KOG0478 DNA replication licens 98.6 1.2E-06 2.6E-11 91.5 15.8 198 203-414 463-729 (804)
249 PF13401 AAA_22: AAA domain; P 98.6 2.1E-07 4.6E-12 79.2 8.8 73 201-273 3-99 (131)
250 PF12775 AAA_7: P-loop contain 98.6 8.8E-08 1.9E-12 92.6 6.6 140 201-354 32-195 (272)
251 PLN03210 Resistant to P. syrin 98.6 1.4E-06 3.1E-11 100.2 17.2 178 163-375 179-390 (1153)
252 PF05729 NACHT: NACHT domain 98.5 1.8E-06 3.8E-11 76.1 13.1 140 204-354 2-165 (166)
253 cd01120 RecA-like_NTPases RecA 98.5 5.9E-07 1.3E-11 78.7 9.7 110 205-318 2-138 (165)
254 KOG0480 DNA replication licens 98.5 2.9E-06 6.2E-11 88.1 15.7 196 202-413 378-647 (764)
255 PF00493 MCM: MCM2/3/5 family 98.5 1.4E-07 3.1E-12 93.8 6.3 189 202-412 57-329 (331)
256 PF03969 AFG1_ATPase: AFG1-lik 98.5 4.8E-07 1E-11 90.8 9.7 103 199-317 59-168 (362)
257 PF00931 NB-ARC: NB-ARC domain 98.5 9.9E-06 2.1E-10 78.5 18.3 168 174-375 2-197 (287)
258 PRK07276 DNA polymerase III su 98.5 5.7E-06 1.2E-10 80.4 15.8 143 173-349 7-172 (290)
259 PRK05818 DNA polymerase III su 98.5 3.9E-06 8.5E-11 79.8 14.2 121 200-339 5-147 (261)
260 PRK07132 DNA polymerase III su 98.4 5.3E-06 1.2E-10 81.1 15.1 140 175-350 3-160 (299)
261 KOG2170 ATPase of the AAA+ sup 98.4 3.9E-06 8.4E-11 80.3 13.4 126 170-316 84-224 (344)
262 KOG1968 Replication factor C, 98.4 1.2E-06 2.7E-11 96.0 11.3 212 156-388 308-535 (871)
263 TIGR02237 recomb_radB DNA repa 98.4 1.4E-06 3.1E-11 80.7 8.5 115 198-315 8-148 (209)
264 PF14516 AAA_35: AAA-like doma 98.3 6.6E-05 1.4E-09 74.8 20.2 172 200-384 29-242 (331)
265 PRK11823 DNA repair protein Ra 98.3 5.4E-06 1.2E-10 85.7 11.6 80 198-277 76-172 (446)
266 PF13191 AAA_16: AAA ATPase do 98.3 1.2E-06 2.7E-11 78.8 6.1 59 170-238 2-63 (185)
267 PF00910 RNA_helicase: RNA hel 98.3 2.5E-06 5.5E-11 70.6 7.4 23 205-227 1-23 (107)
268 cd01121 Sms Sms (bacterial rad 98.3 6.5E-06 1.4E-10 83.0 11.3 79 198-276 78-173 (372)
269 COG1485 Predicted ATPase [Gene 98.3 3.2E-06 7E-11 82.7 8.6 105 199-320 62-175 (367)
270 cd01124 KaiC KaiC is a circadi 98.2 1.7E-05 3.8E-10 71.7 11.7 103 205-318 2-141 (187)
271 KOG0477 DNA replication licens 98.2 1.3E-05 2.9E-10 83.0 11.8 193 204-412 484-760 (854)
272 KOG2228 Origin recognition com 98.2 1.3E-05 2.8E-10 77.8 11.1 162 168-352 24-219 (408)
273 TIGR02012 tigrfam_recA protein 98.2 9.2E-06 2E-10 80.0 9.5 119 198-316 51-191 (321)
274 PRK09361 radB DNA repair and r 98.2 1E-05 2.2E-10 75.9 9.4 117 198-316 19-161 (225)
275 cd00983 recA RecA is a bacter 98.1 1.1E-05 2.4E-10 79.6 9.8 118 198-315 51-190 (325)
276 KOG2383 Predicted ATPase [Gene 98.1 2E-05 4.3E-10 78.2 11.4 156 200-386 112-297 (467)
277 COG1373 Predicted ATPase (AAA+ 98.1 0.00017 3.6E-09 73.7 18.6 139 198-357 34-185 (398)
278 KOG0482 DNA replication licens 98.1 1.8E-05 3.9E-10 80.4 10.1 224 169-410 343-639 (721)
279 TIGR02688 conserved hypothetic 98.1 5.8E-05 1.3E-09 76.3 13.9 63 200-274 207-273 (449)
280 COG1618 Predicted nucleotide k 98.1 4.8E-05 1E-09 66.7 11.2 26 201-226 4-29 (179)
281 cd01394 radB RadB. The archaea 98.1 3.5E-05 7.5E-10 71.9 11.2 118 198-317 15-158 (218)
282 PRK08118 topology modulation p 98.1 2E-05 4.3E-10 70.7 8.8 101 204-354 3-103 (167)
283 PRK08533 flagellar accessory p 98.0 5.1E-05 1.1E-09 71.6 11.7 110 198-317 20-163 (230)
284 TIGR01618 phage_P_loop phage n 98.0 1.1E-05 2.5E-10 75.3 6.6 72 202-275 12-95 (220)
285 TIGR00416 sms DNA repair prote 98.0 5.4E-05 1.2E-09 78.5 12.2 78 198-275 90-184 (454)
286 PF07693 KAP_NTPase: KAP famil 98.0 0.00038 8.3E-09 68.7 17.9 80 260-355 171-266 (325)
287 cd03283 ABC_MutS-like MutS-lik 98.0 3.5E-05 7.6E-10 71.1 9.4 108 198-320 21-151 (199)
288 KOG1051 Chaperone HSP104 and r 98.0 8.9E-05 1.9E-09 81.2 13.8 161 168-354 186-365 (898)
289 COG4650 RtcR Sigma54-dependent 98.0 1.4E-05 3E-10 76.2 6.4 198 198-414 204-448 (531)
290 COG5271 MDN1 AAA ATPase contai 98.0 3E-05 6.5E-10 87.5 9.5 138 201-353 1542-1704(4600)
291 PRK06067 flagellar accessory p 97.9 7.6E-05 1.6E-09 70.5 11.2 77 198-274 21-133 (234)
292 PF13207 AAA_17: AAA domain; P 97.9 7.4E-06 1.6E-10 68.8 3.6 31 205-235 2-32 (121)
293 cd03216 ABC_Carb_Monos_I This 97.9 8E-05 1.7E-09 66.4 10.2 108 198-319 22-144 (163)
294 PRK09376 rho transcription ter 97.9 6.9E-05 1.5E-09 75.2 10.5 113 202-314 169-317 (416)
295 KOG2543 Origin recognition com 97.9 0.00016 3.5E-09 71.4 12.7 159 169-351 7-192 (438)
296 PRK09354 recA recombinase A; P 97.9 5.4E-05 1.2E-09 75.3 9.3 78 198-275 56-152 (349)
297 cd01393 recA_like RecA is a b 97.9 6.4E-05 1.4E-09 70.3 9.5 117 198-315 15-167 (226)
298 PHA00729 NTP-binding motif con 97.9 2E-05 4.3E-10 73.6 5.5 25 203-227 18-42 (226)
299 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00018 3.8E-09 68.2 12.0 38 198-235 17-57 (237)
300 PRK04296 thymidine kinase; Pro 97.9 0.00013 2.8E-09 66.8 10.6 69 204-273 4-90 (190)
301 cd01123 Rad51_DMC1_radA Rad51_ 97.8 7E-05 1.5E-09 70.5 8.2 117 198-315 15-168 (235)
302 cd01128 rho_factor Transcripti 97.8 0.00021 4.5E-09 68.2 11.3 115 200-314 14-164 (249)
303 PRK00131 aroK shikimate kinase 97.8 2E-05 4.3E-10 70.3 4.1 34 200-233 2-35 (175)
304 KOG0481 DNA replication licens 97.8 0.00021 4.7E-09 72.8 11.7 192 204-411 366-641 (729)
305 PF13671 AAA_33: AAA domain; P 97.8 7.3E-05 1.6E-09 64.5 7.1 36 205-242 2-37 (143)
306 COG4178 ABC-type uncharacteriz 97.8 4.7E-05 1E-09 80.2 6.9 106 198-318 415-575 (604)
307 PRK06581 DNA polymerase III su 97.8 0.002 4.3E-08 60.6 16.8 139 201-358 14-167 (263)
308 PRK15455 PrkA family serine pr 97.7 4E-05 8.6E-10 80.2 5.9 64 165-235 73-137 (644)
309 COG1116 TauB ABC-type nitrate/ 97.7 9.7E-05 2.1E-09 69.4 7.9 28 199-226 26-53 (248)
310 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 0.00034 7.4E-09 63.2 11.3 35 205-241 2-36 (183)
311 PF05707 Zot: Zonular occluden 97.7 2.4E-05 5.1E-10 71.9 3.7 123 205-339 3-146 (193)
312 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00034 7.4E-09 63.3 11.2 106 199-318 22-133 (177)
313 PRK07261 topology modulation p 97.7 6.4E-05 1.4E-09 67.6 6.4 33 204-236 2-34 (171)
314 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00017 3.8E-09 69.4 9.4 94 165-272 57-160 (264)
315 cd01131 PilT Pilus retraction 97.7 0.0002 4.4E-09 65.9 9.5 67 204-270 3-83 (198)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00031 6.8E-09 61.2 10.2 104 198-320 22-130 (144)
317 cd03238 ABC_UvrA The excision 97.7 0.00021 4.6E-09 64.6 9.3 119 198-337 17-162 (176)
318 PHA02624 large T antigen; Prov 97.7 0.00016 3.5E-09 76.0 9.1 121 198-338 427-561 (647)
319 PRK04841 transcriptional regul 97.7 0.0012 2.6E-08 74.3 16.8 154 201-375 31-220 (903)
320 cd03247 ABCC_cytochrome_bd The 97.7 0.00041 8.9E-09 62.6 10.6 108 198-320 24-160 (178)
321 TIGR02858 spore_III_AA stage I 97.6 0.00015 3.3E-09 70.0 8.0 68 203-270 112-203 (270)
322 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.0004 8.6E-09 66.8 10.7 38 198-235 32-72 (259)
323 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00046 1E-08 60.8 10.4 110 198-321 21-144 (157)
324 PF06745 KaiC: KaiC; InterPro 97.6 0.00018 3.9E-09 67.5 8.1 108 198-315 15-159 (226)
325 COG4619 ABC-type uncharacteriz 97.6 0.00024 5.2E-09 62.9 8.1 28 198-225 25-52 (223)
326 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00052 1.1E-08 64.0 11.0 111 202-323 29-160 (213)
327 PF00437 T2SE: Type II/IV secr 97.6 9.5E-05 2.1E-09 71.3 6.2 100 162-272 98-208 (270)
328 cd03246 ABCC_Protease_Secretio 97.6 0.00059 1.3E-08 61.3 11.0 107 199-319 25-158 (173)
329 COG1126 GlnQ ABC-type polar am 97.6 0.00051 1.1E-08 63.3 10.4 51 252-316 145-195 (240)
330 PF13604 AAA_30: AAA domain; P 97.6 0.00012 2.7E-09 67.3 6.5 35 202-236 18-55 (196)
331 cd03228 ABCC_MRP_Like The MRP 97.6 0.00038 8.3E-09 62.4 9.5 108 198-320 24-158 (171)
332 PRK06762 hypothetical protein; 97.6 0.00018 3.8E-09 64.1 7.2 39 202-240 2-40 (166)
333 COG1066 Sms Predicted ATP-depe 97.6 0.00082 1.8E-08 67.3 12.4 100 198-297 89-204 (456)
334 TIGR02782 TrbB_P P-type conjug 97.6 0.0003 6.5E-09 69.0 9.3 71 201-271 131-214 (299)
335 cd00046 DEXDc DEAD-like helica 97.6 0.00037 7.9E-09 58.5 8.8 24 203-226 1-24 (144)
336 TIGR01420 pilT_fam pilus retra 97.6 0.00012 2.5E-09 73.4 6.6 71 201-271 121-205 (343)
337 cd01122 GP4d_helicase GP4d_hel 97.6 0.00026 5.7E-09 68.2 8.7 38 198-235 26-67 (271)
338 PRK04040 adenylate kinase; Pro 97.6 0.00063 1.4E-08 62.2 10.7 30 202-231 2-33 (188)
339 COG5271 MDN1 AAA ATPase contai 97.6 0.00015 3.2E-09 82.3 7.4 135 203-352 889-1047(4600)
340 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00049 1.1E-08 63.4 10.0 25 199-223 24-49 (200)
341 PF03266 NTPase_1: NTPase; In 97.6 6.6E-05 1.4E-09 67.4 4.0 23 204-226 1-23 (168)
342 PF04665 Pox_A32: Poxvirus A32 97.6 0.002 4.2E-08 61.0 14.1 133 200-351 11-169 (241)
343 TIGR03880 KaiC_arch_3 KaiC dom 97.6 0.00072 1.6E-08 63.3 11.2 110 198-316 12-153 (224)
344 smart00534 MUTSac ATPase domai 97.6 0.00094 2E-08 60.8 11.6 101 205-318 2-123 (185)
345 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00082 1.8E-08 60.0 10.9 104 198-318 23-149 (166)
346 PF06309 Torsin: Torsin; Inte 97.6 8.8E-05 1.9E-09 62.8 4.3 52 169-226 26-77 (127)
347 PRK04328 hypothetical protein; 97.6 0.00095 2.1E-08 63.8 12.0 38 198-235 19-59 (249)
348 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 0.00022 4.8E-09 67.7 7.5 56 251-320 147-202 (254)
349 cd00544 CobU Adenosylcobinamid 97.6 0.0004 8.7E-09 62.4 8.8 107 205-317 2-126 (169)
350 PRK09519 recA DNA recombinatio 97.6 0.00037 7.9E-09 76.0 10.1 117 198-314 56-194 (790)
351 cd03230 ABC_DR_subfamily_A Thi 97.6 0.00041 8.8E-09 62.4 8.9 106 199-318 23-156 (173)
352 cd03214 ABC_Iron-Siderophores_ 97.6 0.00043 9.3E-09 62.6 9.1 110 198-320 21-161 (180)
353 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.0012 2.5E-08 62.1 12.3 38 198-235 16-56 (229)
354 PRK12723 flagellar biosynthesi 97.5 0.00079 1.7E-08 68.3 11.8 132 201-346 173-329 (388)
355 PRK13948 shikimate kinase; Pro 97.5 0.00026 5.6E-09 64.4 7.5 43 200-244 8-50 (182)
356 COG2274 SunT ABC-type bacterio 97.5 0.00054 1.2E-08 74.6 11.2 65 251-337 617-681 (709)
357 COG4608 AppF ABC-type oligopep 97.5 0.00034 7.5E-09 66.6 8.4 106 198-316 35-169 (268)
358 cd03243 ABC_MutS_homologs The 97.5 0.00079 1.7E-08 62.1 10.7 25 200-224 27-51 (202)
359 cd00984 DnaB_C DnaB helicase C 97.5 0.00044 9.6E-09 65.3 9.3 38 198-235 9-50 (242)
360 PRK03839 putative kinase; Prov 97.5 6.8E-05 1.5E-09 67.8 3.5 31 204-234 2-32 (180)
361 COG2804 PulE Type II secretory 97.5 0.00054 1.2E-08 70.4 10.3 95 163-271 233-337 (500)
362 COG3854 SpoIIIAA ncharacterize 97.5 0.00065 1.4E-08 63.1 9.7 72 202-273 137-230 (308)
363 TIGR02238 recomb_DMC1 meiotic 97.5 0.0004 8.7E-09 68.6 8.9 117 198-315 92-244 (313)
364 PRK13947 shikimate kinase; Pro 97.5 7.9E-05 1.7E-09 66.6 3.7 31 204-234 3-33 (171)
365 PHA02774 E1; Provisional 97.5 0.00048 1E-08 72.3 9.7 37 198-234 430-467 (613)
366 PRK13695 putative NTPase; Prov 97.5 0.0016 3.5E-08 58.5 12.1 23 204-226 2-24 (174)
367 PRK05800 cobU adenosylcobinami 97.5 0.00034 7.5E-09 62.9 7.5 106 204-316 3-125 (170)
368 cd00464 SK Shikimate kinase (S 97.5 9.6E-05 2.1E-09 64.6 3.8 37 204-242 1-37 (154)
369 PRK14974 cell division protein 97.5 0.002 4.3E-08 64.2 13.4 73 201-273 139-234 (336)
370 PLN03187 meiotic recombination 97.5 0.00045 9.7E-09 68.9 8.8 116 198-314 122-273 (344)
371 PRK04301 radA DNA repair and r 97.5 0.00043 9.3E-09 68.6 8.6 117 198-315 98-251 (317)
372 PRK05973 replicative DNA helic 97.5 0.0011 2.4E-08 62.7 11.0 39 198-236 60-101 (237)
373 PRK00625 shikimate kinase; Pro 97.4 0.00011 2.3E-09 66.4 3.6 31 204-234 2-32 (173)
374 PRK00771 signal recognition pa 97.4 0.0017 3.7E-08 66.8 12.8 193 200-410 93-333 (437)
375 COG1119 ModF ABC-type molybden 97.4 0.0009 1.9E-08 62.8 9.6 64 251-326 179-242 (257)
376 cd00227 CPT Chloramphenicol (C 97.4 0.0001 2.3E-09 66.3 3.4 37 202-238 2-38 (175)
377 TIGR02533 type_II_gspE general 97.4 0.0011 2.4E-08 69.3 11.4 96 163-272 217-322 (486)
378 TIGR00767 rho transcription te 97.4 0.0008 1.7E-08 68.0 9.8 115 200-314 166-316 (415)
379 PRK14532 adenylate kinase; Pro 97.4 0.00011 2.5E-09 66.8 3.4 37 204-242 2-38 (188)
380 PRK13949 shikimate kinase; Pro 97.4 0.00012 2.5E-09 65.8 3.4 32 203-234 2-33 (169)
381 COG0703 AroK Shikimate kinase 97.4 0.00017 3.7E-09 64.4 4.3 41 202-244 2-42 (172)
382 cd03213 ABCG_EPDR ABCG transpo 97.4 0.00084 1.8E-08 61.5 9.1 107 198-318 31-172 (194)
383 PRK10436 hypothetical protein; 97.4 0.00084 1.8E-08 69.6 9.9 95 163-271 193-297 (462)
384 TIGR02236 recomb_radA DNA repa 97.4 0.00061 1.3E-08 67.2 8.6 117 198-315 91-245 (310)
385 COG1124 DppF ABC-type dipeptid 97.4 0.00063 1.4E-08 63.7 8.1 51 254-317 152-202 (252)
386 cd03232 ABC_PDR_domain2 The pl 97.4 0.0014 3E-08 60.0 10.3 107 198-318 29-169 (192)
387 KOG3347 Predicted nucleotide k 97.4 0.00013 2.8E-09 63.1 3.2 32 202-233 7-38 (176)
388 PF05272 VirE: Virulence-assoc 97.4 0.00076 1.7E-08 62.1 8.5 111 198-338 48-169 (198)
389 PTZ00035 Rad51 protein; Provis 97.4 0.00098 2.1E-08 66.5 9.9 116 198-314 114-265 (337)
390 PRK12339 2-phosphoglycerate ki 97.4 0.00077 1.7E-08 62.1 8.4 29 202-230 3-31 (197)
391 PF10443 RNA12: RNA12 protein; 97.4 0.013 2.8E-07 59.5 17.7 152 175-355 3-232 (431)
392 PRK10536 hypothetical protein; 97.4 0.0013 2.8E-08 62.6 10.0 41 170-225 57-97 (262)
393 cd02021 GntK Gluconate kinase 97.4 0.00015 3.3E-09 63.3 3.5 28 205-232 2-29 (150)
394 PRK06217 hypothetical protein; 97.4 0.00016 3.4E-09 65.7 3.7 31 204-234 3-33 (183)
395 PF00448 SRP54: SRP54-type pro 97.3 0.0016 3.4E-08 60.0 10.2 101 202-315 1-124 (196)
396 PRK14531 adenylate kinase; Pro 97.3 0.00017 3.7E-09 65.5 3.7 31 203-233 3-33 (183)
397 PRK12724 flagellar biosynthesi 97.3 0.0046 1E-07 63.0 14.3 140 174-322 194-351 (432)
398 TIGR01313 therm_gnt_kin carboh 97.3 0.00018 3.9E-09 63.8 3.6 32 205-238 1-32 (163)
399 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0012 2.5E-08 58.8 8.8 106 201-320 20-144 (162)
400 COG1120 FepC ABC-type cobalami 97.3 0.0014 3.1E-08 62.5 9.7 28 199-226 25-52 (258)
401 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0022 4.8E-08 59.4 10.8 25 200-224 27-51 (204)
402 TIGR02655 circ_KaiC circadian 97.3 0.0018 3.8E-08 68.0 11.4 111 198-317 17-167 (484)
403 cd01428 ADK Adenylate kinase ( 97.3 0.00018 3.9E-09 65.5 3.5 35 205-241 2-36 (194)
404 TIGR02239 recomb_RAD51 DNA rep 97.3 0.00058 1.3E-08 67.5 7.3 117 198-315 92-244 (316)
405 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.002 4.3E-08 60.5 10.4 25 200-224 29-53 (222)
406 TIGR02538 type_IV_pilB type IV 97.3 0.00096 2.1E-08 71.2 9.3 96 163-272 291-396 (564)
407 cd02020 CMPK Cytidine monophos 97.3 0.0002 4.3E-09 61.9 3.4 30 205-234 2-31 (147)
408 COG1102 Cmk Cytidylate kinase 97.3 0.00019 4.2E-09 63.0 3.2 28 205-232 3-30 (179)
409 PLN02200 adenylate kinase fami 97.3 0.00045 9.8E-09 65.4 6.1 41 200-242 41-81 (234)
410 PRK13541 cytochrome c biogenes 97.3 0.0028 6E-08 58.0 11.1 29 198-226 22-50 (195)
411 TIGR02655 circ_KaiC circadian 97.3 0.0017 3.6E-08 68.2 10.8 77 198-274 259-366 (484)
412 COG2884 FtsE Predicted ATPase 97.3 0.00047 1E-08 62.2 5.6 54 254-321 148-201 (223)
413 cd02027 APSK Adenosine 5'-phos 97.3 0.00085 1.8E-08 58.9 7.2 35 205-239 2-39 (149)
414 TIGR02525 plasmid_TraJ plasmid 97.3 0.0005 1.1E-08 69.4 6.4 70 203-272 150-236 (372)
415 PRK08154 anaerobic benzoate ca 97.3 0.00064 1.4E-08 67.1 7.1 36 199-234 130-165 (309)
416 PRK06547 hypothetical protein; 97.3 0.00023 5E-09 64.1 3.5 35 200-234 13-47 (172)
417 cd03217 ABC_FeS_Assembly ABC-t 97.3 0.0018 3.9E-08 59.6 9.6 107 198-318 22-165 (200)
418 PRK14530 adenylate kinase; Pro 97.3 0.00024 5.3E-09 66.2 3.8 30 204-233 5-34 (215)
419 PTZ00088 adenylate kinase 1; P 97.2 0.00028 6.1E-09 66.5 4.1 37 202-240 6-42 (229)
420 TIGR00064 ftsY signal recognit 97.2 0.0056 1.2E-07 59.3 13.2 74 200-273 70-166 (272)
421 COG1136 SalX ABC-type antimicr 97.2 0.0015 3.3E-08 61.1 8.8 65 253-337 152-216 (226)
422 COG1122 CbiO ABC-type cobalt t 97.2 0.00033 7.2E-09 66.2 4.5 29 198-226 26-54 (235)
423 PRK13894 conjugal transfer ATP 97.2 0.0015 3.3E-08 64.7 9.2 71 201-271 147-229 (319)
424 COG4088 Predicted nucleotide k 97.2 0.00095 2.1E-08 61.0 7.1 22 205-226 4-25 (261)
425 cd01130 VirB11-like_ATPase Typ 97.2 0.00049 1.1E-08 62.7 5.3 72 200-271 23-110 (186)
426 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00084 1.8E-08 64.0 7.1 34 205-238 2-38 (249)
427 PRK11889 flhF flagellar biosyn 97.2 0.0032 6.9E-08 63.6 11.3 96 174-273 217-332 (436)
428 PLN03186 DNA repair protein RA 97.2 0.00089 1.9E-08 66.8 7.5 118 198-316 119-272 (342)
429 PRK05057 aroK shikimate kinase 97.2 0.00034 7.4E-09 62.9 4.1 34 202-235 4-37 (172)
430 cd03215 ABC_Carb_Monos_II This 97.2 0.0022 4.8E-08 58.0 9.5 107 198-318 22-165 (182)
431 PRK13539 cytochrome c biogenes 97.2 0.0031 6.7E-08 58.3 10.6 29 198-226 24-52 (207)
432 PRK13900 type IV secretion sys 97.2 0.00048 1E-08 68.6 5.5 72 200-271 158-245 (332)
433 PRK14722 flhF flagellar biosyn 97.2 0.0015 3.1E-08 65.9 9.0 28 199-226 134-161 (374)
434 PRK13833 conjugal transfer pro 97.2 0.00097 2.1E-08 66.0 7.6 71 201-271 143-225 (323)
435 smart00487 DEXDc DEAD-like hel 97.2 0.0013 2.9E-08 58.6 7.9 24 203-226 25-49 (201)
436 PRK13946 shikimate kinase; Pro 97.2 0.00028 6.1E-09 64.2 3.4 33 202-234 10-42 (184)
437 PRK03731 aroL shikimate kinase 97.2 0.00033 7.3E-09 62.6 3.9 32 203-234 3-34 (171)
438 cd03239 ABC_SMC_head The struc 97.2 0.0038 8.1E-08 56.5 10.6 101 204-319 24-160 (178)
439 PRK06696 uridine kinase; Valid 97.2 0.00079 1.7E-08 63.1 6.4 40 200-239 20-62 (223)
440 PRK10416 signal recognition pa 97.2 0.0062 1.3E-07 60.3 13.0 74 200-273 112-208 (318)
441 cd03229 ABC_Class3 This class 97.2 0.0033 7E-08 56.7 10.2 110 198-320 22-164 (178)
442 cd03115 SRP The signal recogni 97.2 0.0051 1.1E-07 55.0 11.4 32 205-236 3-37 (173)
443 TIGR02788 VirB11 P-type DNA tr 97.2 0.00057 1.2E-08 67.4 5.4 75 197-271 139-228 (308)
444 PRK11174 cysteine/glutathione 97.1 0.0022 4.7E-08 68.9 10.3 29 198-226 372-400 (588)
445 COG2805 PilT Tfp pilus assembl 97.1 0.00094 2E-08 64.3 6.5 72 201-272 124-209 (353)
446 COG1131 CcmA ABC-type multidru 97.1 0.002 4.4E-08 63.1 9.1 53 256-321 149-201 (293)
447 PRK11176 lipid transporter ATP 97.1 0.0026 5.5E-08 68.3 10.8 29 198-226 365-393 (582)
448 PF05970 PIF1: PIF1-like helic 97.1 0.0017 3.8E-08 65.5 8.9 103 200-315 20-149 (364)
449 PRK14528 adenylate kinase; Pro 97.1 0.00035 7.7E-09 63.7 3.5 34 204-239 3-36 (186)
450 COG0563 Adk Adenylate kinase a 97.1 0.00045 9.8E-09 62.5 4.1 28 204-231 2-29 (178)
451 PRK00279 adk adenylate kinase; 97.1 0.00072 1.6E-08 63.0 5.6 35 204-240 2-36 (215)
452 PRK13764 ATPase; Provisional 97.1 0.00052 1.1E-08 73.0 5.0 71 201-272 256-335 (602)
453 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 8.9E-09 62.7 3.7 34 204-239 5-38 (188)
454 TIGR01351 adk adenylate kinase 97.1 0.00038 8.3E-09 64.6 3.5 34 205-240 2-35 (210)
455 PRK02496 adk adenylate kinase; 97.1 0.00042 9E-09 62.8 3.6 30 204-233 3-32 (184)
456 PRK14527 adenylate kinase; Pro 97.1 0.00037 8.1E-09 63.6 3.3 33 200-232 4-36 (191)
457 CHL00195 ycf46 Ycf46; Provisio 97.1 0.031 6.7E-07 58.5 17.8 125 261-407 81-206 (489)
458 TIGR01613 primase_Cterm phage/ 97.1 0.0019 4.1E-08 63.6 8.4 137 172-337 53-202 (304)
459 PF06414 Zeta_toxin: Zeta toxi 97.1 0.0014 3E-08 60.4 6.9 67 200-266 13-98 (199)
460 PRK13538 cytochrome c biogenes 97.1 0.0045 9.7E-08 57.1 10.4 29 198-226 23-51 (204)
461 TIGR03796 NHPM_micro_ABC1 NHPM 97.1 0.0027 5.9E-08 69.8 10.4 29 198-226 501-529 (710)
462 PRK09302 circadian clock prote 97.1 0.0035 7.6E-08 66.2 10.8 110 198-316 27-176 (509)
463 PF00406 ADK: Adenylate kinase 97.1 0.00084 1.8E-08 58.8 5.2 35 207-243 1-35 (151)
464 COG4555 NatA ABC-type Na+ tran 97.1 0.0051 1.1E-07 56.2 10.2 27 200-226 26-52 (245)
465 PRK10867 signal recognition pa 97.1 0.0087 1.9E-07 61.6 13.3 195 200-410 98-341 (433)
466 PF13245 AAA_19: Part of AAA d 97.1 0.00075 1.6E-08 52.2 4.2 24 203-226 11-35 (76)
467 PRK13851 type IV secretion sys 97.1 0.00066 1.4E-08 67.8 4.9 73 199-271 159-246 (344)
468 PRK12608 transcription termina 97.1 0.0048 1E-07 61.9 10.9 113 202-314 133-281 (380)
469 COG4618 ArpD ABC-type protease 97.1 0.0029 6.2E-08 65.0 9.4 51 256-320 485-535 (580)
470 PF08303 tRNA_lig_kinase: tRNA 97.1 0.0058 1.2E-07 54.1 10.1 132 208-355 5-146 (168)
471 cd01878 HflX HflX subfamily. 97.1 0.016 3.5E-07 53.1 13.8 23 203-225 42-64 (204)
472 cd03233 ABC_PDR_domain1 The pl 97.0 0.0045 9.7E-08 57.1 10.0 29 198-226 29-57 (202)
473 COG2909 MalT ATP-dependent tra 97.0 0.014 3.1E-07 63.4 14.9 156 201-375 36-228 (894)
474 COG1118 CysA ABC-type sulfate/ 97.0 0.00094 2E-08 64.5 5.4 28 198-225 24-51 (345)
475 PF13238 AAA_18: AAA domain; P 97.0 0.00041 8.9E-09 58.3 2.7 22 205-226 1-22 (129)
476 PRK13540 cytochrome c biogenes 97.0 0.0017 3.7E-08 59.7 7.0 29 198-226 23-51 (200)
477 PHA02530 pseT polynucleotide k 97.0 0.0016 3.4E-08 63.8 7.1 35 203-239 3-38 (300)
478 TIGR03797 NHPM_micro_ABC2 NHPM 97.0 0.0035 7.5E-08 68.7 10.5 29 198-226 475-503 (686)
479 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.005 1.1E-07 54.6 9.5 115 204-336 4-152 (159)
480 PLN02674 adenylate kinase 97.0 0.00058 1.3E-08 64.8 3.8 40 200-241 29-68 (244)
481 PRK00409 recombination and DNA 97.0 0.0072 1.6E-07 66.9 12.9 22 203-224 328-349 (782)
482 PRK13808 adenylate kinase; Pro 97.0 0.0055 1.2E-07 60.7 10.7 35 204-240 2-36 (333)
483 PRK13543 cytochrome c biogenes 97.0 0.0021 4.6E-08 59.7 7.5 28 198-225 33-60 (214)
484 COG2874 FlaH Predicted ATPases 97.0 0.0024 5.3E-08 58.7 7.5 127 188-326 12-176 (235)
485 PRK10790 putative multidrug tr 97.0 0.0038 8.2E-08 67.1 10.4 29 198-226 363-391 (592)
486 cd03269 ABC_putative_ATPase Th 97.0 0.0066 1.4E-07 56.1 10.7 29 198-226 22-50 (210)
487 COG1127 Ttg2A ABC-type transpo 97.0 0.0044 9.5E-08 58.1 9.2 54 252-318 154-207 (263)
488 PRK09302 circadian clock prote 97.0 0.0053 1.1E-07 64.8 11.1 108 198-315 269-407 (509)
489 PF01583 APS_kinase: Adenylyls 97.0 0.0023 5E-08 56.5 7.0 41 202-242 2-45 (156)
490 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0013 2.9E-08 56.5 5.4 30 200-229 20-49 (133)
491 PRK09544 znuC high-affinity zi 97.0 0.0025 5.5E-08 60.9 7.9 29 198-226 26-54 (251)
492 TIGR03375 type_I_sec_LssB type 97.0 0.004 8.6E-08 68.3 10.5 29 198-226 487-515 (694)
493 PRK13657 cyclic beta-1,2-gluca 97.0 0.005 1.1E-07 66.2 11.1 29 198-226 357-385 (588)
494 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.0046 1E-07 58.3 9.6 29 198-226 23-51 (236)
495 TIGR02868 CydC thiol reductant 97.0 0.0052 1.1E-07 65.1 11.0 29 198-226 357-385 (529)
496 KOG3928 Mitochondrial ribosome 97.0 0.027 5.9E-07 56.6 15.0 50 333-383 405-458 (461)
497 PF12780 AAA_8: P-loop contain 97.0 0.0045 9.7E-08 59.8 9.4 220 169-409 9-264 (268)
498 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0018 3.9E-08 64.4 6.8 40 202-241 162-201 (325)
499 PF09848 DUF2075: Uncharacteri 97.0 0.0013 2.9E-08 66.0 6.0 23 204-226 3-25 (352)
500 cd03266 ABC_NatA_sodium_export 96.9 0.0029 6.3E-08 58.8 7.9 29 198-226 27-55 (218)
No 1
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-103 Score=719.61 Aligned_cols=420 Identities=85% Similarity=1.335 Sum_probs=413.3
Q ss_pred ccccccCCCCCCChHhHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCc
Q 014332 7 DEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPL 86 (426)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~lk~~~~~~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (426)
++.++++++.+|+|.||++||+||.+||+.+|+++|++|+++..+++.+.|+||+|||||||+.|++.++.+.+++++|+
T Consensus 16 ~~~~d~~~~~~l~e~di~~lk~yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqpl 95 (435)
T KOG0729|consen 16 DEKEDDKPINPLDEGDIALLKSYGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPL 95 (435)
T ss_pred cchhhccCCCccchhhHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCc
Confidence 34445688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCc
Q 014332 87 QVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVT 166 (426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 166 (426)
+|++|.++|+.+..+.+|+|.++++++|+|+++..+++.++++|++|++++..|+++..||+++||++++|.++++|+++
T Consensus 96 qvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvt 175 (435)
T KOG0729|consen 96 QVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVT 175 (435)
T ss_pred eeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcch
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEG 246 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~ 246 (426)
|.|+||+.++++.|+++++.|+.||+.|-.+|+.||+|||+|||||||||++|||+|+++++.||++-+|+|+++|+|++
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccC
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 326 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r 326 (426)
++++|++|+.|+.+..|||||||||++++.|++++.++++++|+++++++++++||++++|+.|+++||+|+.|||+|+|
T Consensus 256 armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallr 335 (435)
T KOG0729|consen 256 ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLR 335 (435)
T ss_pred HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 327 PGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 327 ~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
|||+|+.++|.+||.+.|..||++|.+.|.+..++.++.+|++|++.+|++|+++|++|+|+|++.+++..|..||.+|+
T Consensus 336 pgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 336 PGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred CcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCcccCCC
Q 014332 407 NKVIKGYQKFSATPKYMVYN 426 (426)
Q Consensus 407 ~~v~~~~~~~~~~~~~~~~~ 426 (426)
++|.++|.+||.|++|+.||
T Consensus 416 ~kvvkgy~kfsatprym~yn 435 (435)
T KOG0729|consen 416 NKVVKGYAKFSATPRYMTYN 435 (435)
T ss_pred HHHHHHHHhccCCcchhccC
Confidence 99999999999999999987
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-92 Score=675.45 Aligned_cols=395 Identities=55% Similarity=0.886 Sum_probs=368.3
Q ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCe
Q 014332 24 ALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAK 103 (426)
Q Consensus 24 ~~lk~~~~~~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (426)
...+.+...+|...+.+.+.++.+...++..+........++++...|+...+..+..+++|++||+|.++++++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~----~ 86 (406)
T COG1222 11 GDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDG----R 86 (406)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCc----e
Confidence 344556666677666666666666665555543333334566666678888888888899999999999999875 4
Q ss_pred EEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHH
Q 014332 104 YVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREV 183 (426)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~ 183 (426)
++|+.+++++|+|++.+.++...|+||++|++++.++++...||++.||.++.|.+++.|+++|+||||+++|+++|+++
T Consensus 87 ~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~ 166 (406)
T COG1222 87 AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREV 166 (406)
T ss_pred EEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCE
Q 014332 184 VELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKAC 263 (426)
Q Consensus 184 i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~ 263 (426)
|++|++||++|.++|+.||+|||||||||||||+||||+|++++++||++.+|+|+++|+|++++++|++|+.|+.++||
T Consensus 167 VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 167 VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHH
Q 014332 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343 (426)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~e 343 (426)
||||||||+++++|++++++++.++|++|++||++||||++.++|.||+|||+++.|||||+||||||+.|+||+||.+.
T Consensus 247 IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406)
T COG1222 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG 326 (406)
T ss_pred EEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCCCCCCcc
Q 014332 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKY 422 (426)
Q Consensus 344 r~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~~~~~~~ 422 (426)
|.+||++|+++|++..++|++.||+.|+|+|||||+++|++|+|+|+|+++..||++||.+|+++|.....+...+..|
T Consensus 327 R~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~~~~~~~~~ 405 (406)
T COG1222 327 RAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKKLSSTARY 405 (406)
T ss_pred HHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988888777665
No 3
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-75 Score=529.67 Aligned_cols=376 Identities=48% Similarity=0.798 Sum_probs=352.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 014332 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIA 112 (426)
Q Consensus 33 ~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (426)
||.++++++|.++.+....+++|...+.. |+. ...+..+..++.+++...||.+++.+++ ++++|++..-.
T Consensus 21 y~~~ki~~~~~~v~~kt~nlrrleaqrne---ln~--kvr~lreel~~lqe~gsyvgev~k~m~k----~kVLVKvhpeg 91 (404)
T KOG0728|consen 21 YYLQKIEELQLQVAEKTQNLRRLEAQRNE---LNA--KVRLLREELQLLQEPGSYVGEVVKAMGK----KKVLVKVHPEG 91 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhH--HHHHHHHHHHHHhcCcchHHHHHHhcCc----ceEEEEEcCCC
Confidence 69999999999999999999999754322 221 2222333333445678889999999876 57999999999
Q ss_pred eEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChh
Q 014332 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (426)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~ 192 (426)
+|+|.+...++-.++++|.+|++...+|.+...||.++||.++.|.+++.|+.+|+-+||++.++++++++|++|.+||+
T Consensus 92 Kyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPE 171 (404)
T KOG0728|consen 92 KYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 171 (404)
T ss_pred cEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 193 ~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
+|..+|+..|+|+|||||||||||+||+++|+.+.|.||++++++++++|+|++.+++|++|-.|+.++|+|||+||||+
T Consensus 172 LF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 172 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred HHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHH
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l 352 (426)
+++.|.+++.+++.++|+++++||+++|||....++.||++||+.+.|||+|+||||+|+.|+||+|+.+.|.+||++|.
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCCC
Q 014332 353 RTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFS 417 (426)
Q Consensus 353 ~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~~ 417 (426)
++|++...+++..+|....|.||++++.+|++|+|+|+++++-++|++||+-|+.+|+.......
T Consensus 332 rkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~n 396 (404)
T KOG0728|consen 332 RKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKN 396 (404)
T ss_pred hhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999997765543
No 4
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-72 Score=513.32 Aligned_cols=375 Identities=42% Similarity=0.719 Sum_probs=352.0
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHhh----ccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCC-----
Q 014332 29 YGLGPYSTSIKKAEKEIKDMAKKVNDLC----GIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNS----- 99 (426)
Q Consensus 29 ~~~~~y~~~~~~~e~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 99 (426)
.++..+..+++.+.++|+-+++++.++. .+++. +..+.+..+.++++|++|+.++++++-+.
T Consensus 20 mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ek---------IkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e 90 (424)
T KOG0652|consen 20 MSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEK---------IKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEE 90 (424)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH---------HHhhHHHhhccccCchHHhhHHHHhcCCcccchh
Confidence 3445778899999999999999998874 23443 66778899999999999999999987321
Q ss_pred ------------CCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCcc
Q 014332 100 ------------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTY 167 (426)
Q Consensus 100 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 167 (426)
..+-++|+.++-..|+..+-..+++..++||+.|++++.+|-+..+||.++|+++..|.+++.|+.+|
T Consensus 91 ~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~Y 170 (424)
T KOG0652|consen 91 DSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQY 170 (424)
T ss_pred ccCCcccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccc
Confidence 01335778888888887777789999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchH
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGA 247 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~ 247 (426)
+||||++.++++|.++|.+|+.|++.|..+|+.||+|+|+|||||||||++||++|.+++++|+.+.++.+++.|+|+++
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGA 250 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCC
Q 014332 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP 327 (426)
Q Consensus 248 ~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~ 327 (426)
+.+|+.|..|+..+|+||||||+|+++.+|+++...++.++|+++++||++++||.+...+.||++||+.+.|||+|+|+
T Consensus 251 kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRS 330 (424)
T KOG0652|consen 251 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRS 330 (424)
T ss_pred HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 328 GRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 328 gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
||+|+.|+||.|+.+.|.+|+++|.++|++..+++++.+|+.|++|+|++.+++|-+|+|.|++++...|+++||.+++.
T Consensus 331 GRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~ 410 (424)
T KOG0652|consen 331 GRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGIL 410 (424)
T ss_pred ccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 014332 408 KVIKG 412 (426)
Q Consensus 408 ~v~~~ 412 (426)
.|...
T Consensus 411 eVqak 415 (424)
T KOG0652|consen 411 EVQAK 415 (424)
T ss_pred HHHHh
Confidence 88643
No 5
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-72 Score=517.54 Aligned_cols=378 Identities=44% Similarity=0.726 Sum_probs=344.5
Q ss_pred CCCChHhHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeec
Q 014332 16 RPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKII 95 (426)
Q Consensus 16 ~~l~~~~~~~lk~~~~~~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (426)
.|...|.+++||.. +|+..---.++.-..-+++.+..+. +-+..+.+..+ +..|+.||++.+++
T Consensus 53 ~p~~~C~lrlLk~~-------RIkDyLLMEEEFI~NQe~~k~~e~~--------~ee~r~~vd~l-RGtPmsvg~leEii 116 (440)
T KOG0726|consen 53 TPHTQCKLKLLKLE-------RIKDYLLMEEEFIRNQERLKPQEEK--------QEEERSKVDDL-RGTPMSVGTLEEII 116 (440)
T ss_pred ccchhHHHHHHHHH-------HHHHHHHHHHHHHhhccccCCchhh--------hHHHHhHHHhh-cCCccccccHHHHh
Confidence 57889999999944 4443333333333333334333222 22222334444 67999999999999
Q ss_pred CCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHH
Q 014332 96 SPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKE 175 (426)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~ 175 (426)
+++. ++|+.+.+..|+|++.++++...++||..|-++....++...|..+.||.++.|.+++.|..+|.||||++.
T Consensus 117 dd~h----aivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~ 192 (440)
T KOG0726|consen 117 DDNH----AIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLES 192 (440)
T ss_pred cCCc----eEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHH
Confidence 9864 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHH
Q 014332 176 QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQ 255 (426)
Q Consensus 176 ~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~ 255 (426)
++++|++.+++|+.||+.|+..|++||+||+|||+||||||+||+|+|+++.++|+++.+++|+++|.|++++.+|++|+
T Consensus 193 QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~ 272 (440)
T KOG0726|consen 193 QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFR 272 (440)
T ss_pred HHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEE
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVE 335 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~ 335 (426)
.|..++|+|+||||||+++.+|.+.++++..++|+++++||++++||++++.|.||+|||+.+.|||+|.||||+|+.|+
T Consensus 273 vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIe 352 (440)
T KOG0726|consen 273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352 (440)
T ss_pred HHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 014332 336 FGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 336 ~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~ 413 (426)
||.||...++.||.+|..+|.+..+++++.+...-+.+||+||+++|++|+++|+|..+..+|++||.+|.++|+..-
T Consensus 353 f~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 353 FPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred cCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997554
No 6
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-71 Score=503.37 Aligned_cols=364 Identities=42% Similarity=0.720 Sum_probs=343.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccce
Q 014332 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAK 113 (426)
Q Consensus 34 y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (426)
+.++++-++.+..-++++.+.|. +|- . -+.+.-+..++.|+++|++.+.++.+. .+|...++.+
T Consensus 37 le~~le~l~vqe~yik~e~~~lk--re~---------~-~aqeevkriqsvplvigqfle~vdqnt----~ivgsttgsn 100 (408)
T KOG0727|consen 37 LERELELLEVQEDYIKDEQRNLK--REL---------L-HAQEEVKRIQSVPLVIGQFLEAVDQNT----AIVGSTTGSN 100 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH---------H-HHHHHHHHHhccchHHHHHHHhhhccC----ceeecccCCc
Confidence 46677777777777888877776 543 2 233334444789999999999998754 8999999999
Q ss_pred EEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhH
Q 014332 114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEK 193 (426)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~ 193 (426)
|+|++.+.++...++|+++|++++.+..+...||++.|++.+++...++|+++|.||||++-+++++++++++|+.|.++
T Consensus 101 y~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~l 180 (408)
T KOG0727|consen 101 YYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADL 180 (408)
T ss_pred eEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 194 ~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
|.++|+.||+|||+|||||||||+||+++|+.+.+.||++.+++|+++|.|++++++|++|+.|++++|+||||||+|++
T Consensus 181 y~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~ 353 (426)
+.+|++.+++.+.++|+.+++||++|+||+...||.||++||+.+.|||+|+||||+|+.|+||+||..+++-+|.....
T Consensus 261 atkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 261 ATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred hhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 014332 354 TMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 354 ~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~ 413 (426)
+|++++++|++.+..+-+..||+||.++|++|+|.|.+.++..|...||++|...+.+..
T Consensus 341 km~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 341 KMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred cccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999876544
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4e-60 Score=477.23 Aligned_cols=362 Identities=42% Similarity=0.714 Sum_probs=337.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceE
Q 014332 35 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKF 114 (426)
Q Consensus 35 ~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (426)
..+++.++.+++.+..+.+++. ++. ..+..++..+ +.+|+.+|++.++++++ +++|+.+++.+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 91 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLK--REL---------IRAKEEVKRI-QSVPLVIGQFLEMIDSN----YGIVSSTSGSNY 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHH-hCCCceEEEEEEEEcCC----EEEEEcCCCCEE
Confidence 4667777777777777777776 332 2345555555 78999999999999864 699999999999
Q ss_pred EEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHH
Q 014332 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194 (426)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~ 194 (426)
+|.+.+.++...+++|++|+++..++.+...+|...++.+..+.+++.|+++|+||||++.++++|++++.+|+.+|+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~ 171 (398)
T PTZ00454 92 YVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELY 171 (398)
T ss_pred EEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 195 ~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++..+|+|++++.++.+|..|+..+|+||||||+|.++
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
.+|.+...+.+...++.+.+++++++++....+++||+|||+++.+||+++|||||++.|+|+.|+.++|..||+.++.+
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 98877666677889999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 355 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 355 ~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
+++..++++..++..++||||+||.++|++|++.|+++++..|+.+||.+|++++...
T Consensus 332 ~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 332 MNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998765
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.1e-59 Score=472.09 Aligned_cols=333 Identities=47% Similarity=0.803 Sum_probs=318.1
Q ss_pred hhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcc
Q 014332 75 SDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSV 154 (426)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~ 154 (426)
.++..+ +..|+.||++.++++++ +++|+.+++.+|+|++.+.++...++||++|+++..+..+...+|..+|+.+
T Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~ 169 (438)
T PTZ00361 95 KKVDDL-RGSPLSVGTLEEIIDEN----HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLV 169 (438)
T ss_pred HHHHHh-hCCCcEEEEEEEEeCCC----eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhh
Confidence 334444 68999999999999864 5999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
..|.+++.|+.+|+||+|++.++++|++++.+|+.+|++|..+|+.+|+++|||||||||||++|+++|++++.+|+.+.
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
++++.++|.|+++..++.+|..|..+.|+||||||||.++.+|.+..++++.+.++++++++.+++++....++.||+||
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT 329 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT 329 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence 99999999999999999999999999999999999999999887777778889999999999999999888899999999
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcC
Q 014332 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR 394 (426)
Q Consensus 315 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~ 394 (426)
|+++.+|++++|||||++.|+|+.|+.++|.+||+.++.++.+..+++++.++..++||+|+||+++|++|++.|+++++
T Consensus 330 Nr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 330 NRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred CChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhh
Q 014332 395 KTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 395 ~~It~ed~~~A~~~v~~~ 412 (426)
..|+.+||..|+++++..
T Consensus 410 ~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 410 MKVTQADFRKAKEKVLYR 427 (438)
T ss_pred CccCHHHHHHHHHHHHhh
Confidence 999999999999999654
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.7e-56 Score=448.08 Aligned_cols=373 Identities=48% Similarity=0.793 Sum_probs=338.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccce
Q 014332 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAK 113 (426)
Q Consensus 34 y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (426)
+..++++++.+++.+..+.+.+. ++. .++..++..+ ..+|+.+|.+.+.++++ +++|..+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~-~~~~~~~~~i~~~~~~~----~~~v~~~~g~~ 76 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLE--REL---------ERLKSELEKL-KSPPLIVATVLEVLDDG----RVVVKSSGGPQ 76 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHh-hCCCceEEEEEEEeCCC----eEEEEECCCCE
Confidence 35677777777777777776665 221 2233344444 56899999999999874 48888889999
Q ss_pred EEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhH
Q 014332 114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEK 193 (426)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~ 193 (426)
|+++....+....+++|.+|.++...+.+...+|...++.+..+.+.+.|+++|++|+|+++++++|++.+..|+.+|+.
T Consensus 77 ~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~ 156 (389)
T PRK03992 77 FLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPEL 156 (389)
T ss_pred EEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 194 ~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++..+|+|++++.++.+|..++...|+||||||+|.+
T Consensus 157 ~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 157 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred HHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~ 353 (426)
++.|.+.+.+++.++++.+.+++.+++++...+++.||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.+++
T Consensus 237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 237 AAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred hcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 99887776677888999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCCCCCCcc
Q 014332 354 TMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKY 422 (426)
Q Consensus 354 ~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~~~~~~~ 422 (426)
.+.+..++++..++..|+||+|+||+++|++|++.|+++++..|+.+||.+|++++.+...+...+...
T Consensus 317 ~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~~~~~~~ 385 (389)
T PRK03992 317 KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKDSMEEPG 385 (389)
T ss_pred cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccccccccc
Confidence 998888899999999999999999999999999999999999999999999999998887766444333
No 10
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-58 Score=428.18 Aligned_cols=324 Identities=46% Similarity=0.806 Sum_probs=310.9
Q ss_pred hcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCccccccccc
Q 014332 82 EEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEE 161 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (426)
++..-.++.+.+.+++ .+|+|+.+.+.+|++++...++..+|..|.+|+++-....+..-||.++| .+..|..+.
T Consensus 51 qsvg~~~gevlk~l~~----~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~ 125 (388)
T KOG0651|consen 51 QSVGQIIGEVLKQLED----EKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHED 125 (388)
T ss_pred hhcCchhHHHHhhccc----cceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcC
Confidence 3444557777777765 46999999999999999999999999999999999999999999999999 888999999
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
..+++|+.++|+-.++.++++.|+.|+.+|++|.++|+++|++++||||||+|||++|+++|..++++|+.+..+++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
|+|++.+.+|+.|..|+.+.|||||+||||++++.++...+..+.++|++|++|+++|++++..++|.+|+|||+|+.|+
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 401 (426)
|+|+||||+++.+++|.|+...|..|++.|.+.+.....++.+.+.+..+||+|+|++++|++|.++|+++.+..+-+||
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed 365 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHED 365 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 014332 402 FLDAVNKVI 410 (426)
Q Consensus 402 ~~~A~~~v~ 410 (426)
|..+++++.
T Consensus 366 ~~k~vrk~~ 374 (388)
T KOG0651|consen 366 FMKLVRKQA 374 (388)
T ss_pred HHHHHHHHH
Confidence 999999874
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-56 Score=456.41 Aligned_cols=262 Identities=44% Similarity=0.775 Sum_probs=248.2
Q ss_pred CCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC
Q 014332 149 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 228 (426)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~ 228 (426)
.+.|+..+....+.|+++|+||||+++++.+|++.|.+|+.||+.|.++|+.||+|||||||||||||++||++|+++++
T Consensus 415 ~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 415 GIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred cCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 45677777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 014332 229 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (426)
Q Consensus 229 ~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (426)
+|+.+.+++++++|+|++++.++++|+.|+..+||||||||||++++.|++++. ....+.+.+||++|||+....+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcE
Confidence 999999999999999999999999999999999999999999999999974332 55678888999999999999999
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014332 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMF 388 (426)
Q Consensus 309 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~ 388 (426)
+||+|||+|+.||+|++||||||+.|++|+||.+.|.+||+.+++++++.+++|+..||..|+|||||||..+|++|++.
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc--CCCccHHHHHHHHHHHHhhc
Q 014332 389 AIRAR--RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 389 A~~~~--~~~It~ed~~~A~~~v~~~~ 413 (426)
|+++. ...|+.+||.+|+..+.+..
T Consensus 652 a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 652 ALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHhcccccccHHHHHHHHHhhcccC
Confidence 99986 56799999999999876554
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-55 Score=437.56 Aligned_cols=262 Identities=43% Similarity=0.711 Sum_probs=246.0
Q ss_pred CCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC
Q 014332 149 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 228 (426)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~ 228 (426)
.+.|+..+..+...|+++|+||||++++..+|..+|.+|+++|++|+.+|+..|.|||||||||||||+||||+|++.++
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 014332 229 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (426)
Q Consensus 229 ~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (426)
+|+.|.+++|+++|+|++++.+|.+|+.|+..+||||||||+|+|+++|++.. .....+.+.+||.+|||+..+.+|
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999997654 556678999999999999999999
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh--cCCCCCCccHHHHHHhCC--CCcHHHHHHHHHH
Q 014332 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR--TMNCERDIRFELLARLCP--NSTGADIRSVCTE 384 (426)
Q Consensus 309 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~--~~~~~~~v~l~~la~~t~--g~sg~di~~l~~~ 384 (426)
.||+|||+|+.+|||++||||||..+++++|+.++|..||+.+++ +..+..++|++.||+.+. |||||||..||++
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999 777889999999998765 9999999999999
Q ss_pred HHHHHHHHc-------------C---CCccHHHHHHHHHHHHhhc
Q 014332 385 AGMFAIRAR-------------R---KTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 385 A~~~A~~~~-------------~---~~It~ed~~~A~~~v~~~~ 413 (426)
|.++|+++. + ..+|..||.+|++++.+..
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 999999874 1 1377889999999886544
No 13
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.8e-53 Score=424.93 Aligned_cols=359 Identities=49% Similarity=0.842 Sum_probs=330.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceE
Q 014332 35 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKF 114 (426)
Q Consensus 35 ~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (426)
..++++++.+++.+..+.+.+. ++. +...+.....+..|+.++++.+.+++. ++++..+++.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 68 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLE--REL----------ERLRSEIERLRSPPLIVGTVLEVLDDN----RVVVKSSTGPNF 68 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH----------HHHHHHHHHHhCCCeEEEEEEEEecCC----EEEEEeCCCCEE
Confidence 4567778888888888777665 332 222333344467899999999999863 588999999999
Q ss_pred EEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHH
Q 014332 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194 (426)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~ 194 (426)
+++....+++..+++|.+|+++...+.+...+|...++.+..+.+.+.|.++|+||+|+++++++|++++..|+.+++.|
T Consensus 69 ~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~ 148 (364)
T TIGR01242 69 VVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELF 148 (364)
T ss_pred EEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 195 ~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
..+|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++...+.|++...++.+|..++...|+||||||+|.++
T Consensus 149 ~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 149 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIA 228 (364)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
..+.+...+++.+.++.+.+++.+++++...+++.||+|||+++.+|++++|||||++.|+|+.|+.++|.+||+.++..
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 229 AKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred cccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 88877666778889999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 355 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 355 ~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+.+..++++..++..++||+|+||.++|++|++.|+++++..|+.+||.+|++++
T Consensus 309 ~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 309 MKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 8888889999999999999999999999999999999999999999999999886
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-51 Score=405.18 Aligned_cols=253 Identities=40% Similarity=0.660 Sum_probs=240.1
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
...+++|+|+-|+++++++|.+++++ ++.|+.|.++|-+-|+||||+||||||||+||||+|.+.+.||++..+++|-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.|+|.+++++|++|..|+.++||||||||||+++++|.... ......++.|||.+||||..+.+|+||+|||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999995432 226678999999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 014332 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 400 (426)
Q Consensus 321 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~e 400 (426)
|++|.||||||++|.+|.||...|.+||+.|++++..+.++|+..||+-|.||+|+||.++++.|+..|..++...+|++
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~ 532 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMK 532 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCC
Q 014332 401 DFLDAVNKVIKGYQKFS 417 (426)
Q Consensus 401 d~~~A~~~v~~~~~~~~ 417 (426)
|++.|-++++-+-++.+
T Consensus 533 ~LE~akDrIlMG~ERks 549 (752)
T KOG0734|consen 533 HLEFAKDRILMGPERKS 549 (752)
T ss_pred HHhhhhhheeecccccc
Confidence 99999999876665543
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-49 Score=407.52 Aligned_cols=254 Identities=41% Similarity=0.726 Sum_probs=234.6
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
...+.|+++|+||||++++|.+|.+.|.+|++||++|.+ |+++..|||||||||||||++|||+|.++...|+.|.+++
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 345789999999999999999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEEeC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMATN 315 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~atn 315 (426)
|+++|+|+++..+|++|++|+..+||||||||+|+++++|+.++++| .-+-|.+.|||.++||+. +...|+||+|||
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 99999999999999999999999999999999999999997765543 356788899999999996 567899999999
Q ss_pred CCCCCCccccCCCCcceEEEecCC-CHHHHHHHHHHHHhcCCCCCCccHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHc
Q 014332 316 RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGADIRSVCTEAGMFAIRAR 393 (426)
Q Consensus 316 ~~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~-g~sg~di~~l~~~A~~~A~~~~ 393 (426)
||+.|||+|+||||||+.+++.++ |.+.+..+|+...+++.++.++++..+|+.|+ .|||||+-++|..|.+.|+++.
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 67788899999999999999999999999985 7899999999999999999874
Q ss_pred -----------------CCCccHHHHHHHHHHHHhhc
Q 014332 394 -----------------RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 394 -----------------~~~It~ed~~~A~~~v~~~~ 413 (426)
.-.|+++||.+|.++..+..
T Consensus 900 i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 900 IHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 12499999999999876544
No 16
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-48 Score=408.23 Aligned_cols=256 Identities=43% Similarity=0.755 Sum_probs=242.9
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
+....++|.|+.|+++++++|.|+|.+ |++|+.|.++|.+.|+|+||+||||||||+||||+|.+.+.||+.+++++|+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 455669999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccC-CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
..++|.++..++++|..|+..+||||||||||+++.+|.+ ...+++.+...+|.|||.+||||....+|+|+++||+++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 9999999999999999999999999999999999999953 334667888899999999999999999999999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 014332 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 397 (426)
Q Consensus 319 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~I 397 (426)
.||++|+||||||+.|.++.|+..+|.+|++.|++..++. .++++..+|.+|+||+|+||.++|++|+..|.+++...|
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i 541 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREI 541 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999986 778999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhccCC
Q 014332 398 TEKDFLDAVNKVIKGYQKF 416 (426)
Q Consensus 398 t~ed~~~A~~~v~~~~~~~ 416 (426)
+..||..|++++..+....
T Consensus 542 ~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 542 GTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred chhhHHHHHHHHhcccccc
Confidence 9999999999998876554
No 17
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-48 Score=388.83 Aligned_cols=225 Identities=39% Similarity=0.722 Sum_probs=212.2
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
++++|.+|||++..+.+|.+.+.. ++||+.|..+|+.||+|||||||||||||+||+|+|++++.||+.++++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 478999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHH-HHHHHHHHHHhcCCCCC----CCeEEEEEeCCC
Q 014332 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDGFDAR----GNIKVLMATNRP 317 (426)
Q Consensus 243 ~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~l~~~~~~----~~v~vI~atn~~ 317 (426)
.|++++.+|++|+.|+..+|||+||||||+++++|... ..++ ++.+.|||+.||++... ..|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a----qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA----QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH----HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999542 3444 34556899999987554 579999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 014332 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 318 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~ 392 (426)
+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++++..||++|+||.||||.+||.+|+..|+++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-47 Score=368.92 Aligned_cols=251 Identities=38% Similarity=0.615 Sum_probs=230.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
.....|.+.|+||.|+.++++-|+++|.+|+..|+.|..+ ..|.+|||++||||||||+||||+|.+++.+|+-|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 3567899999999999999999999999999999999874 578999999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC-CC---eEEEEE
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR-GN---IKVLMA 313 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~-~~---v~vI~a 313 (426)
+.++|.|++++.+|-+|+.|+..+|++|||||||+|+++|+.+ +.++.-.+.-.+||.+|||.... .+ |+|+++
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999999654 34556667777999999998543 23 899999
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc
Q 014332 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 393 (426)
Q Consensus 314 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~ 393 (426)
||.||.||.||+| ||...|.+|+|+.++|..+++..++......+++++.|+..++||||+||.++|++|.|.+.|+.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999853
Q ss_pred -----------------CCCccHHHHHHHHHHHHhhc
Q 014332 394 -----------------RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 394 -----------------~~~It~ed~~~A~~~v~~~~ 413 (426)
...|+.+||++|++++.+..
T Consensus 437 i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 437 IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 13499999999999986654
No 19
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-47 Score=389.66 Aligned_cols=260 Identities=42% Similarity=0.738 Sum_probs=249.9
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
..+....++|.|+.|++++++++.+.|.. +++|..|..+|..-|+|+||+||||||||+|||++|.+.+.||+.+++|+
T Consensus 140 ~~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~ 218 (596)
T COG0465 140 YLEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 218 (596)
T ss_pred hcccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchh
Confidence 34456789999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
++..|+|-+++.+|++|..|+..+||||||||||+++.+|..+..+++.+...++.|+|.+||||..+..|+||++||+|
T Consensus 219 FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRp 298 (596)
T COG0465 219 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRP 298 (596)
T ss_pred hhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999999997777778889999999999999999988999999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 014332 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 397 (426)
Q Consensus 318 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~I 397 (426)
+.+|+||+||||||+.|.++.||...|.+|++.|++...++.++++..+|+.|+||+|+|+.+++++|+..|.++++..|
T Consensus 299 dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i 378 (596)
T COG0465 299 DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEI 378 (596)
T ss_pred ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCC
Q 014332 398 TEKDFLDAVNKVIKGYQKFSA 418 (426)
Q Consensus 398 t~ed~~~A~~~v~~~~~~~~~ 418 (426)
++.||.+|..+++-+.++.+.
T Consensus 379 ~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 379 TMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred eccchHHHHHHHhcCcCcCCc
Confidence 999999999999988877765
No 20
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.1e-44 Score=368.80 Aligned_cols=315 Identities=36% Similarity=0.549 Sum_probs=256.3
Q ss_pred CeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHH
Q 014332 102 AKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMR 181 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~ 181 (426)
++++|.......+++.+...+....+++|.++.++.........+|. ..+..+..++.|+++|+||+|++.++++++
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~ 195 (512)
T TIGR03689 119 GRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPK---AEVEDLVLEEVPDVTYADIGGLDSQIEQIR 195 (512)
T ss_pred CeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCH---hHHhcceeecCCCCCHHHcCChHHHHHHHH
Confidence 45666777777777777777777777777777776654444444442 234566778899999999999999999999
Q ss_pred HHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc----------EEEEecchhhhhhhcchHHHHH
Q 014332 182 EVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------FIRVIGSELVQKYVGEGARMVR 251 (426)
Q Consensus 182 ~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----------~i~v~~~~l~~~~~g~~~~~v~ 251 (426)
+.+.+|+.+|++|..+|+.+|+|+|||||||||||++|+++|++++.+ |+.+.++++.++|+|++++.++
T Consensus 196 ~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir 275 (512)
T TIGR03689 196 DAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIR 275 (512)
T ss_pred HHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999998543 6778889999999999999999
Q ss_pred HHHHHHHcC----CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCC
Q 014332 252 ELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP 327 (426)
Q Consensus 252 ~lf~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~ 327 (426)
.+|+.++.. .|+||||||+|.++.+|..+.+ +....+.+.+|++.++++...++++||+|||+++.|||+++||
T Consensus 276 ~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRp 353 (512)
T TIGR03689 276 LIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRP 353 (512)
T ss_pred HHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCc
Confidence 999988763 6999999999999987743221 1222455679999999998888999999999999999999999
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHHhc-CCCCC---------CccHHHHHH-----------------------------
Q 014332 328 GRLDRKVEFGLPDLESRTQIFKIHTRT-MNCER---------DIRFELLAR----------------------------- 368 (426)
Q Consensus 328 gRf~~~i~~~~P~~~er~~Il~~~l~~-~~~~~---------~v~l~~la~----------------------------- 368 (426)
||||+.|+|+.|+.++|.+||+.++.. +.+.. ..+...++.
T Consensus 354 GRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~ 433 (512)
T TIGR03689 354 GRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLY 433 (512)
T ss_pred cccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEe
Confidence 999999999999999999999999864 23311 112222221
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhhccCCCCCCc
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRAR----RKTVTEKDFLDAVNKVIKGYQKFSATPK 421 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~----~~~It~ed~~~A~~~v~~~~~~~~~~~~ 421 (426)
.++.+||++|+++|.+|...|+++. ...|+.+|+..|+.+-....+++..+..
T Consensus 434 ~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~ 490 (512)
T TIGR03689 434 FKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTN 490 (512)
T ss_pred ecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCC
Confidence 2466899999999999999998763 4689999999999998888877766543
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.3e-44 Score=329.29 Aligned_cols=242 Identities=36% Similarity=0.575 Sum_probs=224.1
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
+..++++++|++|++++++..+-.+++ +.+|+.|..+ .|++||||||||||||++|+++|+++..||+.+.+.+++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 557899999999999999999888876 8999999886 589999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014332 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 319 (426)
..++|++++.++++|+.|+..+|||+||||+|+++-.|.-..- ..++...+..||++|||+..+.+|+.|++||+|+.
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel--RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL--RGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh--cccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999999876643221 22356778899999999999999999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHcCCCcc
Q 014332 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRS-VCTEAGMFAIRARRKTVT 398 (426)
Q Consensus 320 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~-l~~~A~~~A~~~~~~~It 398 (426)
||+++++ ||...|+|.+|+.++|.+|++.+++.+++.-+.++..++..+.|+||+||.. ++..|.+.|+..++..|+
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~ 344 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVE 344 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhh
Confidence 9999999 9999999999999999999999999999998889999999999999999984 888999999999999999
Q ss_pred HHHHHHHHHHH
Q 014332 399 EKDFLDAVNKV 409 (426)
Q Consensus 399 ~ed~~~A~~~v 409 (426)
.+||+.|+++.
T Consensus 345 ~edie~al~k~ 355 (368)
T COG1223 345 REDIEKALKKE 355 (368)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-44 Score=335.35 Aligned_cols=233 Identities=36% Similarity=0.625 Sum_probs=213.4
Q ss_pred ccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+...+.++|++.|+|+.|++.+++.|+++|.+|++.|.+|.. +-.|.+|+||||||||||++||+|+|.+.+.+|+.+
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3445678899999999999999999999999999999999987 446889999999999999999999999999999999
Q ss_pred ecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEE
Q 014332 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLM 312 (426)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~ 312 (426)
+.++|+++|+|++++.++.+|+.|+++.|+||||||||.+++.|+++. +....+.-.+||-+|.|... ..+|+|++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 999999999999999999999999999999999999999999886643 44556666799999999854 55799999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 313 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
+||-|+.||.+++| ||++.|++|+|+...|..+|+.|+...... .+.|+..|++.|+||||+||.-+++.|.|..+|
T Consensus 275 ATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred cCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 99999999999999 999999999999999999999999876654 567899999999999999999999999998877
Q ss_pred H
Q 014332 392 A 392 (426)
Q Consensus 392 ~ 392 (426)
+
T Consensus 353 k 353 (439)
T KOG0739|consen 353 K 353 (439)
T ss_pred H
Confidence 5
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-42 Score=378.51 Aligned_cols=257 Identities=47% Similarity=0.768 Sum_probs=236.3
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
.....+.|.++|++|+|++.+++.|++.+.+|+.+++.|.++|+.+|+|+|||||||||||++|+++|++++++|+.+.+
T Consensus 441 ~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 441 REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
+++.++|+|++++.++.+|..|+..+||||||||+|++++.|.... ......+.+.+|+.+++++....+++||+|||
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn 598 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATN 598 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999998875432 22345677889999999998888999999999
Q ss_pred CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc--
Q 014332 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-- 393 (426)
Q Consensus 316 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~-- 393 (426)
+|+.||++++|||||++.+++|+|+.++|.+||+.+++++.+..++++..+|..|+||||+||.++|++|++.|+++.
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998889999999999999999999999999999998852
Q ss_pred ----------------CCCccHHHHHHHHHHHHhhcc
Q 014332 394 ----------------RKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 394 ----------------~~~It~ed~~~A~~~v~~~~~ 414 (426)
...|+.+||..|+.++.+...
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 126999999999998766553
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-43 Score=355.65 Aligned_cols=229 Identities=39% Similarity=0.668 Sum_probs=218.9
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
+...+.|.||+|+.++++.|.+.|++|.++|.+|.+.+++.+.|||||||||||||+||.++|..++..||.+.++++++
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
+|+|.++..+|++|..|+..+||||||||+|+++++|+-+++|.. -|.+.|+|++|||.....+|.|++||.||+.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 999999999999999999999999999999999999987776653 46788999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 014332 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 321 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~ 392 (426)
||||+||||+|+.+.-+.|+..+|.+|++........+.++|++.+|..|+||||||+..+|..|.+.|..+
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988889999999999999999999999999999988775
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=362.72 Aligned_cols=251 Identities=47% Similarity=0.760 Sum_probs=234.8
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
....+.++|.+++|++.+++.+++.+.+|+.+++.|...++.+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
.++|+|++++.++.+|..|+..+||||||||+|++++.|+.+.. ....+.+.+++.++++.....+|+||+|||+|+
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 99999999999999999999999999999999999998865432 223688889999999999999999999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC--CCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc-CC
Q 014332 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC--ERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-RK 395 (426)
Q Consensus 319 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~--~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~-~~ 395 (426)
.+|++++|||||++.+.+|+||.++|.+||+.++..... ..++++..+++.++||+|+||..+|++|.+.+.++. ..
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~ 469 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRR 469 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999996554 478999999999999999999999999999999998 78
Q ss_pred CccHHHHHHHHHHHHhh
Q 014332 396 TVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 396 ~It~ed~~~A~~~v~~~ 412 (426)
.||.+||..|++.+.+.
T Consensus 470 ~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 470 EVTLDDFLDALKKIKPS 486 (494)
T ss_pred CccHHHHHHHHHhcCCC
Confidence 89999999999985544
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.6e-42 Score=356.48 Aligned_cols=256 Identities=43% Similarity=0.765 Sum_probs=238.7
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
...+.|.++|+||+|++++++++++++.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34557899999999999999999999886 89999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+.+.+.|.+.+.++.+|+.|+..+||||||||||.++.++.....+.+.+..+.+.+++.+++++....+++||+|||++
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998886544445667788899999999999888899999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCc
Q 014332 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTV 397 (426)
Q Consensus 318 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~I 397 (426)
+.+|++++|||||++.|+++.|+.++|.+||+.+++......++++..++..+.||+++||.++|++|+..|.+++...|
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i 283 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEI 283 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999988777788999999999999999999999999999999898999
Q ss_pred cHHHHHHHHHHHHhhcc
Q 014332 398 TEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 398 t~ed~~~A~~~v~~~~~ 414 (426)
+.+||..|+.++..+..
T Consensus 284 ~~~~l~~a~~~~~~~~~ 300 (495)
T TIGR01241 284 TMNDIEEAIDRVIAGPE 300 (495)
T ss_pred CHHHHHHHHHHHhcccc
Confidence 99999999999876653
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-42 Score=330.27 Aligned_cols=246 Identities=37% Similarity=0.645 Sum_probs=222.8
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhC-CCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
.-.++|+||+|++.+++++++.|.+|+.+|++|...+ +.|++|||||||||||||++|+++|++.+++|+-|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 4467999999999999999999999999999997544 478999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC--eEEEEEeCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN--IKVLMATNRPD 318 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~--v~vI~atn~~~ 318 (426)
+|.|++++.++.+|..|...+||||||||+|.+.+.|. ++.++.....-.+|+...||+.+..+ |+|++|||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999882 22244444445699999999987766 99999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc-----
Q 014332 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR----- 393 (426)
Q Consensus 319 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~----- 393 (426)
+||.|++| |+.+.+.++.|+..+|.+||+..++..++++++|+..+|..|.||||.||+.+|+.|+...++.-
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~ 320 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSET 320 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999998877641
Q ss_pred -----------------------CCCccHHHHHHHHHHHHhh
Q 014332 394 -----------------------RKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 394 -----------------------~~~It~ed~~~A~~~v~~~ 412 (426)
.+.++++||..|.+.|...
T Consensus 321 ~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 321 GLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred cchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 2568899999999876544
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9.6e-41 Score=353.23 Aligned_cols=254 Identities=42% Similarity=0.742 Sum_probs=238.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
..+.++|+|++|++++++++.+++.. +.+++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 44678999999999999999999876 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.+.|.+...++.+|..|+...||||||||+|.++..|..+..+++.+.+.++.+++.+++++....+++||+|||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 99999999999999999999999999999999998886655566778889999999999999888899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 014332 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 400 (426)
Q Consensus 321 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~e 400 (426)
|++++|||||++.+.++.|+.++|.+||+.+++...+..++++..+|..+.||+|+||.++|++|+..|.+++...||.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999987777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 014332 401 DFLDAVNKVIKGYQK 415 (426)
Q Consensus 401 d~~~A~~~v~~~~~~ 415 (426)
||..|++++..+...
T Consensus 415 dl~~Ai~rv~~g~~~ 429 (638)
T CHL00176 415 EIDTAIDRVIAGLEG 429 (638)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999999776644
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.2e-39 Score=335.20 Aligned_cols=243 Identities=26% Similarity=0.424 Sum_probs=212.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.++.+|++|+|++.+++.+.+.... .+..+..+|+.+|+|+|||||||||||++|+++|++++.+|+.++++.+.++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4678999999999999999876543 2445677899999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
|+|+++..++.+|..|+..+||||||||||.++..+...+ .+....+.+..++..++. ...+++||+|||+++.||
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~--d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG--DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 9999999999999999999999999999999987543322 123345666677777663 456799999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC--CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTE 399 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~--~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ 399 (426)
++++|+||||+.++++.|+.++|.+||+.|+.+.... .+.+++.++..|+||||+||.++|.+|...|..++ ..+|.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCH
Confidence 9999999999999999999999999999999887543 47889999999999999999999999999998766 46999
Q ss_pred HHHHHHHHHHHhh
Q 014332 400 KDFLDAVNKVIKG 412 (426)
Q Consensus 400 ed~~~A~~~v~~~ 412 (426)
+||..|+.++.+.
T Consensus 454 ~dl~~a~~~~~Pl 466 (489)
T CHL00195 454 DDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999987654
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.4e-38 Score=336.08 Aligned_cols=254 Identities=43% Similarity=0.766 Sum_probs=237.1
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
.....+|+++.|.+..++++.+.+.. +.+++.|..++...|+|+||+||||||||++++++|++++.+|+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34567899999999999999999987 67888999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.+.|.+...++.+|..++..+||||||||+|.++.+|.....+++.+..+++.++|.+++++....+++||+|||+|+.|
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 99999999999999999999999999999999998887655566777788999999999999888899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 014332 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEK 400 (426)
Q Consensus 321 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~e 400 (426)
|++++||||||+.+.++.|+.++|.+||+.|++...+..++++..+++.|.||||+||.++|++|+..|.+.++..|+.+
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~ 383 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 383 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 014332 401 DFLDAVNKVIKGYQK 415 (426)
Q Consensus 401 d~~~A~~~v~~~~~~ 415 (426)
||..|+.++..+..+
T Consensus 384 d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 384 EFEKAKDKIMMGAER 398 (644)
T ss_pred HHHHHHHHHhccccc
Confidence 999999988766543
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=9.6e-38 Score=346.56 Aligned_cols=218 Identities=18% Similarity=0.310 Sum_probs=188.1
Q ss_pred ChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh---------------------------
Q 014332 190 HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY--------------------------- 242 (426)
Q Consensus 190 ~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~--------------------------- 242 (426)
.+..+.++|+.+|+||||+||||||||+||||+|.++++||+.+++++++.++
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34566788999999999999999999999999999999999999999998654
Q ss_pred --------------hcch--HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC---
Q 014332 243 --------------VGEG--ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--- 303 (426)
Q Consensus 243 --------------~g~~--~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--- 303 (426)
++.+ ...++.+|+.|+..+||||||||||+++.+. . -..++.+|+++|++..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s--~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------S--NYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------c--ceehHHHHHHHhccccccC
Confidence 1222 2348899999999999999999999997642 1 1124678888898763
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHH--hcCCCCCC-ccHHHHHHhCCCCcHHHHHH
Q 014332 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT--RTMNCERD-IRFELLARLCPNSTGADIRS 380 (426)
Q Consensus 304 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l--~~~~~~~~-v~l~~la~~t~g~sg~di~~ 380 (426)
...+|+||||||+|+.|||||+||||||+.|.++.|+..+|.+++..++ +++.+..+ ++++.+|+.|.||+||||.+
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 4568999999999999999999999999999999999999999988654 44555433 68999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCC
Q 014332 381 VCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKF 416 (426)
Q Consensus 381 l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~ 416 (426)
+|++|++.|+++++..|+.++|..|+.++..+.+..
T Consensus 1849 LvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206 1849 LTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999998877543
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=314.40 Aligned_cols=239 Identities=41% Similarity=0.688 Sum_probs=223.1
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
++++ .+++|+..++..+++.+++|+.+|..|..+|+++|+++|+|||||||||++++++|++.++.++.++++++++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6677 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHcCC-CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 243 VGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 243 ~g~~~~~v~~lf~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
.|+++..+|..|+.|...+ |++|||||+|+++++|..... -..+...+++..+++.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998854321 24566678888888888889999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 401 (426)
++++| ||||+.+++..|+..+|.+|++.+++.+++..++++..+|..|+||+|+|+.++|.+|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999887 7888
Q ss_pred HHHHHHHHHhh
Q 014332 402 FLDAVNKVIKG 412 (426)
Q Consensus 402 ~~~A~~~v~~~ 412 (426)
|..|...+.+.
T Consensus 409 ~~~A~~~i~ps 419 (693)
T KOG0730|consen 409 FQEALMGIRPS 419 (693)
T ss_pred HHHHHhcCCch
Confidence 88888776543
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-37 Score=330.74 Aligned_cols=252 Identities=38% Similarity=0.678 Sum_probs=222.6
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEec
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIG 235 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~~ 235 (426)
....++|++|||++.++.+|++.|-.|+.+|+.|.++++.||+|||||||||||||+.|+++|..+ ...|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 456789999999999999999999999999999999999999999999999999999999999987 356777889
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
++..++|+|+.++.++.+|+.|+...|+|||+||||-+++.|+.....-+.. ....||..|+|++.++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~S---IvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHAS---IVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhh---HHHHHHHhccCCCCCCceEEEcccC
Confidence 9999999999999999999999999999999999999999996654333333 3445666788889999999999999
Q ss_pred CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcC
Q 014332 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR 394 (426)
Q Consensus 316 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~ 394 (426)
+++.+||+++||||||+.+.||+|+.+.|.+|+.+|.++..-. ...-+..+|..|.||.|+||+++|++|++.++++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999999877632 223357899999999999999999999999988752
Q ss_pred ----------------CCccHHHHHHHHHHHHhhccC
Q 014332 395 ----------------KTVTEKDFLDAVNKVIKGYQK 415 (426)
Q Consensus 395 ----------------~~It~ed~~~A~~~v~~~~~~ 415 (426)
..|..+||..|+.+..+...+
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 238888999999887665544
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=307.36 Aligned_cols=254 Identities=37% Similarity=0.589 Sum_probs=221.1
Q ss_pred ccCCCCcccc--ccCcHHHHHHH-HHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC-cEEEEec
Q 014332 160 EEKPDVTYND--VGGCKEQIEKM-REVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIG 235 (426)
Q Consensus 160 ~~~~~~~~~d--i~G~~~~~~~l-~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-~~i~v~~ 235 (426)
...|+..|++ |||++.....+ +++.......|+..+++|++.-+|+|||||||||||++||.+..-+++ +--.|++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3467888887 89999988666 567766788999999999999999999999999999999999999865 4456899
Q ss_pred chhhhhhhcchHHHHHHHHHHHHc--------CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 236 SELVQKYVGEGARMVRELFQMARS--------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~--------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
++++++|+|+++..+|.+|..|.+ ..-.||++||||++|.+|++.+.+ ..-.-..+.|||..|||.+..+|
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999998853 223599999999999998654321 22223567799999999999999
Q ss_pred eEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CCCCccHHHHHHhCCCCcHHHHHHHHH
Q 014332 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 308 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~----~~~~v~l~~la~~t~g~sg~di~~l~~ 383 (426)
+.||+-|||.+.+|.||+|||||...+++.+||+..|.+|+++|+++|. ++.++|++.||.+|.+||||+|..+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998875 457899999999999999999999999
Q ss_pred HHHHHHHHHc---------------CCCccHHHHHHHHHHHHhhcc
Q 014332 384 EAGMFAIRAR---------------RKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 384 ~A~~~A~~~~---------------~~~It~ed~~~A~~~v~~~~~ 414 (426)
.|..+|..+. .-.|+.+||..|+++|.+.+.
T Consensus 450 sA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG 495 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG 495 (744)
T ss_pred HHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC
Confidence 9999998763 125999999999999987764
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=300.89 Aligned_cols=256 Identities=34% Similarity=0.590 Sum_probs=224.4
Q ss_pred cccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 153 ~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..........+++.|+|++|++.+++.+.+.+.+|+.+|++|..+. .+++++||.||||+|||+|++|+|.++++.|+.
T Consensus 138 ~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~ 216 (428)
T KOG0740|consen 138 GIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN 216 (428)
T ss_pred HHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee
Confidence 3344456677889999999999999999999999999999998764 578899999999999999999999999999999
Q ss_pred EecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEE
Q 014332 233 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--RGNIKV 310 (426)
Q Consensus 233 v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~--~~~v~v 310 (426)
+.++.|.++|+|++++.++.+|..|+..+|+|+||||+|.++.+|.+.. ++...+...+++.+.++... ..+|+|
T Consensus 217 iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e---~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 217 ISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE---HESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred ccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc---cccchhhhhHHHhhhccccCCCCCeEEE
Confidence 9999999999999999999999999999999999999999999995543 33344666788888777643 457999
Q ss_pred EEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-CCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014332 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLARLCPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 311 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~-~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A 389 (426)
|+|||+|+.+|.+++| ||...+.+|.|+.+.|..+|+.++...+ ...+.+++.+++.|+||++.||.++|.+|++.-
T Consensus 294 igaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p 371 (428)
T KOG0740|consen 294 IGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGP 371 (428)
T ss_pred EecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCc
Confidence 9999999999999999 9999999999999999999999998773 235578899999999999999999999999865
Q ss_pred HHHcC-------------CCccHHHHHHHHHHHHhhcc
Q 014332 390 IRARR-------------KTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 390 ~~~~~-------------~~It~ed~~~A~~~v~~~~~ 414 (426)
++... +.|+..||..|++.+.+...
T Consensus 372 ~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 372 LRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred hhhcccchhhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 55432 45888999999988876553
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.3e-35 Score=318.84 Aligned_cols=249 Identities=47% Similarity=0.780 Sum_probs=224.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.+.++|+||+|++.+++.+++++.+|+.+|+.|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
+.|+++..++.+|+.+....|+||||||+|.+++++.......+ .+.+.+|+..++++...+.++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~---~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE---KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHH---HHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 99999999999999999999999999999999987744322112 344556677777777778899999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc--------
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-------- 393 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~-------- 393 (426)
++++|+|||++.+.++.|+.++|.+||+.+.+.+.+..++++..++..++||+++|+..+|++|++.++++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999888888899999999999999999999999999887752
Q ss_pred -----------CCCccHHHHHHHHHHHHhhc
Q 014332 394 -----------RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 394 -----------~~~It~ed~~~A~~~v~~~~ 413 (426)
...++.+||..|+..+.+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12478999999998876543
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.7e-33 Score=271.49 Aligned_cols=205 Identities=19% Similarity=0.205 Sum_probs=163.5
Q ss_pred CCCCccccc-cCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 162 KPDVTYNDV-GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 162 ~~~~~~~di-~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
....+|+++ +|+--...-+.+++...-+ ......|+++|.+++||||||||||++|+++|++++++|+.++++++.+
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 345677777 6665555555544432111 1112357899999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHc-----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------------C
Q 014332 241 KYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------D 303 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------------~ 303 (426)
+|+|++++.+|++|..|+. .+||||||||||+++++|.+.+ +.-..+....+|++.+|+. .
T Consensus 187 k~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~ 264 (413)
T PLN00020 187 ENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKE 264 (413)
T ss_pred CcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccc
Confidence 9999999999999999975 5799999999999999885322 2222233335777776642 3
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCC
Q 014332 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (426)
Q Consensus 304 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~ 373 (426)
...+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.+++..++. ..++..|+..++|-
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq 331 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQ 331 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCC
Confidence 4667999999999999999999999999864 6899999999999999998776 47888888888773
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.91 E-value=5.9e-23 Score=199.49 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=158.3
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCC---cceEecCCCChHHHHHHHHHHhc-------CCcEEEEecch
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK---GVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSE 237 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~---~vLL~GppGtGKT~laralA~~l-------~~~~i~v~~~~ 237 (426)
.+++|+++++++|++++.+ +..+..+.+.|+.++. +++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 5566788888886543 48999999999999999999875 24699999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+++.|+|+++..++.+|+.+.. +||||||+|.++..+.. .....+.+..|+.+++. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 9999999988888888887643 59999999999654321 11235556666655542 34678888888642
Q ss_pred -----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHH----HHhC--CCC-cHHHHHHHHHH
Q 014332 318 -----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELL----ARLC--PNS-TGADIRSVCTE 384 (426)
Q Consensus 318 -----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~l----a~~t--~g~-sg~di~~l~~~ 384 (426)
..++|++++ ||+..|.|+.|+.+++.+|++.++...... .+-....+ .+.. +.| +++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 245799999 999999999999999999999999875533 11112222 2221 333 48999999998
Q ss_pred HHHHHHH
Q 014332 385 AGMFAIR 391 (426)
Q Consensus 385 A~~~A~~ 391 (426)
|...-..
T Consensus 250 ~~~~~~~ 256 (287)
T CHL00181 250 ARMRQAN 256 (287)
T ss_pred HHHHHHH
Confidence 8765433
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=1.9e-22 Score=195.94 Aligned_cols=210 Identities=21% Similarity=0.303 Sum_probs=159.6
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCC---CCcceEecCCCChHHHHHHHHHHhcC-------CcEEEEecchh
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVIGSEL 238 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l~-------~~~i~v~~~~l 238 (426)
+++|+++++++|.+++.+ +..+..+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999987 77888888899874 34899999999999999999998652 37999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP- 317 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~- 317 (426)
+..+.|+++..++.+|+.+.. ++|||||++.+.+.+.+ .....+.+..|+++++. ...+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 999999988888888888744 59999999998643311 11234555556555542 34678888887643
Q ss_pred -C---CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhC------C-CCcHHHHHHHHHHH
Q 014332 318 -D---TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC------P-NSTGADIRSVCTEA 385 (426)
Q Consensus 318 -~---~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t------~-g~sg~di~~l~~~A 385 (426)
+ .++|++.+ ||...|.||.++.+++..|++.++++.... ..-....+.... + --+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 35899999 999999999999999999999999876433 111123333321 1 12679999999988
Q ss_pred HHHHHH
Q 014332 386 GMFAIR 391 (426)
Q Consensus 386 ~~~A~~ 391 (426)
......
T Consensus 250 ~~~~~~ 255 (284)
T TIGR02880 250 RLRQAN 255 (284)
T ss_pred HHHHHH
Confidence 775443
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=1.2e-21 Score=188.32 Aligned_cols=212 Identities=20% Similarity=0.253 Sum_probs=153.1
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCC---CCcceEecCCCChHHHHHHHHHHhc-------CCcEEEEecc
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGS 236 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~~~vLL~GppGtGKT~laralA~~l-------~~~~i~v~~~ 236 (426)
+++++|++.+|++|++++.++..+ ......|..+ +.+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875444 3334456653 3468999999999999999999864 3478899999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
++.+.++|+....++.+|..+. ++||||||+|.|.... ........+..++..++. ...++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~--~~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMED--NRNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhc--cCCCEEEEecCCc
Confidence 9999999999999999998875 3599999999995311 111122334455555553 2456667766543
Q ss_pred C-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh---------CCCCcHHHHHHH
Q 014332 317 P-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL---------CPNSTGADIRSV 381 (426)
Q Consensus 317 ~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~---------t~g~sg~di~~l 381 (426)
. ..++|++++ ||+..+.||.++.+++.+|++.++...... ++-.+..++.. ...-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 2 247889999 999999999999999999999998865543 11122333221 112367899999
Q ss_pred HHHHHHHHHHH
Q 014332 382 CTEAGMFAIRA 392 (426)
Q Consensus 382 ~~~A~~~A~~~ 392 (426)
+..|......+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 99887765443
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.9e-22 Score=195.89 Aligned_cols=212 Identities=23% Similarity=0.307 Sum_probs=166.5
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
+.-..+.+|+.|+-..+.+++|.+-+..++..++.|.+.|..-.+|.|||||||||||+++.|+|+.++..++-+..++.
T Consensus 192 v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v 271 (457)
T KOG0743|consen 192 VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV 271 (457)
T ss_pred cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc
Confidence 33445599999999999999999999999999999999999999999999999999999999999999988887776654
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCC--CCh--HHHHHHHHHHHHhcCCCCCC--CeEEEE
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG--GDN--EVQRTMLEIVNQLDGFDARG--NIKVLM 312 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~--~~~--~~~~~l~~ll~~l~~~~~~~--~v~vI~ 312 (426)
. .... ++.++-.+... +||+|++||+-+.-+...... ... ...-+|..||+.+||+-+.- .-+||+
T Consensus 272 ~-----~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivF 343 (457)
T KOG0743|consen 272 K-----LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVF 343 (457)
T ss_pred c-----CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEE
Confidence 2 2223 66666554433 699999999986544322211 111 22357888999999985544 678999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCC--cHHHHHH
Q 014332 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS--TGADIRS 380 (426)
Q Consensus 313 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~--sg~di~~ 380 (426)
|||.++.|||||+||||+|.+|+++.-+.++...++..|+..-. ...-+..+.+...+. |+||+..
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 99999999999999999999999999999999999999986432 123345555555444 8888764
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=3.5e-22 Score=170.89 Aligned_cols=130 Identities=39% Similarity=0.693 Sum_probs=112.3
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCC-CEEEEEeCCCcccCCccCCCCC
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVG 283 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~ 283 (426)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.++..+.++.+|..+.... |+||||||+|.++... +..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998899999999999999999887 9999999999998766 222
Q ss_pred CChHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 014332 284 GDNEVQRTMLEIVNQLDGFDAR-GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 284 ~~~~~~~~l~~ll~~l~~~~~~-~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 338 (426)
.+......+..++..++..... .+++||++||.++.++++++| +||+..+++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3445555666777777766544 579999999999999999997 89999999874
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-21 Score=201.04 Aligned_cols=245 Identities=20% Similarity=0.304 Sum_probs=198.1
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcch
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEG 246 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~ 246 (426)
|-..-+.+..+..+..++.- ...|. ..++.-...+||+|+||||||++++++|.++|.+++.++|.+++....+..
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred cCCCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 33455566666655555532 22222 112334557999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCcccc
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNRPDTLDPALL 325 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn~~~~ld~al~ 325 (426)
+..+...|..|+.++|+|||+-++|.++..+.+ +.+-.++..+..++. .+.+. +...++||++|+..+.+++.++
T Consensus 476 etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~ 551 (953)
T KOG0736|consen 476 ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQ 551 (953)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHH
Confidence 999999999999999999999999999854322 445556666665555 33333 5678999999999999999999
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH---HcC--------
Q 014332 326 RPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIR---ARR-------- 394 (426)
Q Consensus 326 r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~---~~~-------- 394 (426)
+ -|-..|.++.|++++|.+||+.++....+..++....+++.|.||+.+++.+++..+...+.. +..
T Consensus 552 ~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~ 629 (953)
T KOG0736|consen 552 S--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEE 629 (953)
T ss_pred H--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhc
Confidence 8 888899999999999999999999999999999999999999999999999988776332222 111
Q ss_pred ---------CCccHHHHHHHHHHHHhhccCCCCCCc
Q 014332 395 ---------KTVTEKDFLDAVNKVIKGYQKFSATPK 421 (426)
Q Consensus 395 ---------~~It~ed~~~A~~~v~~~~~~~~~~~~ 421 (426)
..++++||.+|+.+....++...++|+
T Consensus 630 ~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 630 DEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred cccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 569999999999999999999988865
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-21 Score=188.49 Aligned_cols=235 Identities=22% Similarity=0.312 Sum_probs=167.0
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
+.-.+++++-.......|..+... ..+ .+..-.|-++||||||||||||++|+-+|..+|..+-.+.+.++.-.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~a-TaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIA-TAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHH-hcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 334477777777777777665532 111 11122345789999999999999999999999999888887765321
Q ss_pred hcchHHHHHHHHHHHHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 243 VGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 243 ~g~~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
-.+....++.+|+.++.. ..-+|||||.|+++..|.. ...+.....+|..||-. .-+....++++.+||+|..+|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfR--TGdqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFR--TGDQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHH--hcccccceEEEeccCCccchh
Confidence 223456788999999764 4458999999999988843 23344455555555432 114556789999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC----C-------------------Cc----cHHHHHHhCCCCc
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE----R-------------------DI----RFELLARLCPNST 374 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~----~-------------------~v----~l~~la~~t~g~s 374 (426)
.++-. |+|..++||+|..++|..+|..|+.++-.. . .. -+...|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 999999999999999999999988653211 0 00 1456789999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 375 GADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 375 g~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
|++|..|+--....++-.....++...|.+.+...
T Consensus 578 GREiakLva~vQAavYgsedcvLd~~lf~e~v~yk 612 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSEDCVLDEALFDERVDYK 612 (630)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 99999987644444444445556666666665543
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.88 E-value=2.9e-21 Score=177.40 Aligned_cols=197 Identities=22% Similarity=0.271 Sum_probs=135.2
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
..-+|.+++|++|+++.+..++-++..... .-.+..++|||||||+|||+||+.+|++++.+|..++++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 456788999999999999998877764211 124567899999999999999999999999999998886542
Q ss_pred hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc-----CCCC--------CC
Q 014332 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDA--------RG 306 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~~~--------~~ 306 (426)
. ...+..++... ....||||||||.+ +..+|..|+..++... |-.. ..
T Consensus 88 k------~~dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 12222233333 23469999999999 7889999999888532 1111 23
Q ss_pred CeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 307 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 307 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
++.+|+||++...|.+.|+. ||.....+..++.++..+|++.....+++. .+-....+|+++.| +++-...+++++
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 68899999999999999999 999999999999999999999888887776 23345788999877 776666676665
Q ss_pred H
Q 014332 386 G 386 (426)
Q Consensus 386 ~ 386 (426)
.
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 3
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-21 Score=185.85 Aligned_cols=238 Identities=24% Similarity=0.325 Sum_probs=182.5
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCC-----CCCCcceEecCCCChHHHHHHHHHHhc---------CCcE
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGI-----DPPKGVLCYGPPGTGKTLLARAVANRT---------DACF 230 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-----~~~~~vLL~GppGtGKT~laralA~~l---------~~~~ 230 (426)
--|+.++--...+++|..++...+. |.+.+. .-.+-+|||||||||||+|+||+|+.+ ...+
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~----fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~l 214 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALL----FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQL 214 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHH----HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceE
Confidence 3466777778888888887765433 333333 335679999999999999999999986 3468
Q ss_pred EEEecchhhhhhhcchHHHHHHHHHHHHc---CCC--EEEEEeCCCcccCCccC-CCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 231 IRVIGSELVQKYVGEGARMVRELFQMARS---KKA--CIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~lf~~a~~---~~p--~Il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
+.+++..++++|.+++.+.+..+|+...+ ... -.++|||+++++..|.. .+.....+..|.+..+|+++|.+..
T Consensus 215 iEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 215 IEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR 294 (423)
T ss_pred EEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988654 222 35669999999988843 3444566778999999999999999
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-------------CCcc-----HHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-------------RDIR-----FELL 366 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-------------~~v~-----l~~l 366 (426)
..||++++|+|-.+.+|.|+.. |-|-+..+.+|+...|.+|++.++..+--. ..+. ...+
T Consensus 295 ~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~ 372 (423)
T KOG0744|consen 295 YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNIL 372 (423)
T ss_pred CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHH
Confidence 9999999999999999999999 999999999999999999999887543110 0011 1122
Q ss_pred HH-hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 367 AR-LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 367 a~-~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
+. .+.|.||+-|+.+=..|. |.--...+|+.++|..|+-...
T Consensus 373 ~~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~ 415 (423)
T KOG0744|consen 373 IELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAA 415 (423)
T ss_pred HHHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHHH
Confidence 22 358999999988755443 2222446799999998876543
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.86 E-value=3.1e-20 Score=184.36 Aligned_cols=221 Identities=19% Similarity=0.218 Sum_probs=167.3
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
..+.++.+|++++|+++.++.+..++.... ..-.++.++|||||||||||++|+++|++++..+..++++.+
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 345677899999999999999998886411 112467799999999999999999999999998887766543
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc-------CCC------CC
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------AR 305 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~------~~ 305 (426)
.. ...+..++... ..++||||||||.+ +...+..+..+++... +.. ..
T Consensus 88 ~~------~~~l~~~l~~l--~~~~vl~IDEi~~l-----------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 EK------PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred cC------hHHHHHHHHhc--ccCCEEEEecHhhc-----------chHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 21 12233334332 34679999999998 3344555555555321 000 11
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHH
Q 014332 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 384 (426)
Q Consensus 306 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~ 384 (426)
.++.+|++||++..++++|++ ||...+.|+.|+.+++.+|++......++. ++-.+..++..+.| +++.+..++..
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHH
Confidence 347889999999999999998 999999999999999999999988876654 22346788999988 45788899999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 385 AGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 385 A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+..+|...+...|+.+++..+++.+
T Consensus 226 ~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 226 VRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 8888877777789999999998765
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-20 Score=191.19 Aligned_cols=211 Identities=20% Similarity=0.234 Sum_probs=170.3
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
-.+.++||+||+|||||.|+++++.++ .+.+..++|+.+.........+.++.+|..+.+++|+||++|++|.+++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 456789999999999999999999986 4678889999998877777888999999999999999999999999998
Q ss_pred CccCCCCCCChHHHHHHHHHHHHh-cCC-CCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQL-DGF-DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l-~~~-~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~ 353 (426)
.... ..+.+......+..+++++ .-+ ..+..+.||++.+....++|.|.+|++|+.++.+|.|+..+|.+||+..++
T Consensus 509 ~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 509 ASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred cCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 3322 2222333444444555443 222 334457899999999999999999999999999999999999999999987
Q ss_pred cCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHh
Q 014332 354 TMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR----RKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 354 ~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~----~~~It~ed~~~A~~~v~~ 411 (426)
+.... ..-|++.++..|+||...|+..++.+|...|+... .+.+|.++|.++++...+
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P 650 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVP 650 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcCh
Confidence 75532 12345559999999999999999999999988432 347999999999988753
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.85 E-value=6e-20 Score=180.39 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=158.7
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcc
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE 245 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~ 245 (426)
+|++++|+++++++|..++..... .-..+.+++||||||||||++|+++|++++..+..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 688999999999999998864211 1234678999999999999999999999998877666543321
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC-------C------CCCCCeEEEE
Q 014332 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-------F------DARGNIKVLM 312 (426)
Q Consensus 246 ~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-------~------~~~~~v~vI~ 312 (426)
...+...+... ..+.+|||||+|.+ +...+..+..+++.... . .....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 34569999999998 34455556656543221 0 0123478999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 313 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
+||++..+++++++ ||...+.|+.|+.+++.++++..+...+.. ++-.++.+++.+.|. ++.+..+|..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHH
Confidence 99999999999999 998899999999999999999888765443 223457788998885 46788899988877766
Q ss_pred HcCCCccHHHHHHHHHHH
Q 014332 392 ARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 392 ~~~~~It~ed~~~A~~~v 409 (426)
.+...|+.+++..++...
T Consensus 212 ~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 212 RGQKIINRDIALKALEML 229 (305)
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 666779999999998773
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.4e-19 Score=169.56 Aligned_cols=219 Identities=18% Similarity=0.214 Sum_probs=174.6
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
..++.+|++.+|+++++++|.-+|... +..-....++|||||||.|||+||..+|+++|..+-..+++.+-.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 346789999999999999999998762 333456789999999999999999999999999998888776632
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc-------CCC------CCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------ARGN 307 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~------~~~~ 307 (426)
+.-+-.++... ...+|+||||||++ ++.+...|+..++... |.. .-..
T Consensus 91 ------~gDlaaiLt~L--e~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcC--CcCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22222233332 33469999999999 5667777777776532 221 1246
Q ss_pred eEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHH
Q 014332 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 386 (426)
Q Consensus 308 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~ 386 (426)
+.+|+||.+...|...|+. ||.....+..++.++..+|+......+++. .+-....+|+++.| +++-...++++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999999 999999999999999999999998888776 33345778999877 7778888999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHH
Q 014332 387 MFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 387 ~~A~~~~~~~It~ed~~~A~~~v 409 (426)
-+|.-++...|+.+-..+|+...
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHh
Confidence 99998999899988888887653
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-19 Score=189.41 Aligned_cols=222 Identities=45% Similarity=0.709 Sum_probs=197.2
Q ss_pred cCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEE
Q 014332 186 LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265 (426)
Q Consensus 186 ~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il 265 (426)
.++.+++.|..+++.++++++++||||+|||++++++|+. +..+..+++++..+++.|+++..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999999999999999999 777788999999999999999999999999999999999
Q ss_pred EEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 014332 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (426)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~ 345 (426)
++|++|.+.+.+.... .....+...+++..++++. ...+.+++.||++..++++++++|||+..+.++.|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~---~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQ---GEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccc---cchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 9999999999886522 2223344556666666666 44488888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHhh
Q 014332 346 QIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR------RKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 346 ~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~------~~~It~ed~~~A~~~v~~~ 412 (426)
+|+..+...+....+.+...++..+.|++++++..+|.++.+.+.++. ...++.+++.++++++.+.
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 999999999888878899999999999999999999999999988885 3458999999999998664
No 52
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2e-19 Score=175.77 Aligned_cols=207 Identities=27% Similarity=0.382 Sum_probs=153.3
Q ss_pred ccCCCCccccccCcHHHH---HHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 160 EEKPDVTYNDVGGCKEQI---EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
..-++.++++++|++..+ .-|+++++. ....+++||||||||||++|+.+|..+++.|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 344678999999999987 556677654 3456899999999999999999999999999999864
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcC----CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 014332 237 ELVQKYVGEGARMVRELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (426)
-.+-+-++.+++.|+.. ...||||||||.+ +...|..++..++ .+.+++|+
T Consensus 83 -------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIG 137 (436)
T COG2256 83 -------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIG 137 (436)
T ss_pred -------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEe
Confidence 23567788899988542 2469999999999 6777888877765 56788888
Q ss_pred Ee--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh--cCCCC------CCccHHHHHHhCCCCcHHHHHHHH
Q 014332 313 AT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR--TMNCE------RDIRFELLARLCPNSTGADIRSVC 382 (426)
Q Consensus 313 at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~--~~~~~------~~v~l~~la~~t~g~sg~di~~l~ 382 (426)
|| |+.-.+.++|++ |. +++++.+.+.++..++++..+. ..++. .+-..+.++..+.| |.+.++
T Consensus 138 ATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aL 210 (436)
T COG2256 138 ATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRAL 210 (436)
T ss_pred ccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHH
Confidence 77 556889999999 87 6899999999999999988432 22222 12234566666655 777777
Q ss_pred HHHHHHHHHHcCC-CccHHHHHHHHHHHHh
Q 014332 383 TEAGMFAIRARRK-TVTEKDFLDAVNKVIK 411 (426)
Q Consensus 383 ~~A~~~A~~~~~~-~It~ed~~~A~~~v~~ 411 (426)
+..-+.+...... .++.+++.+.+.+...
T Consensus 211 N~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 211 NLLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 6655544433322 3447777777766544
No 53
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.83 E-value=8.1e-20 Score=191.70 Aligned_cols=248 Identities=19% Similarity=0.298 Sum_probs=172.1
Q ss_pred CCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEe
Q 014332 129 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCY 208 (426)
Q Consensus 129 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~ 208 (426)
.+.++.+++.+..-...|..-..-..+..+.+++++.+|++++|++..++.++..+.. ..+.++||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~ 92 (531)
T TIGR02902 26 QTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIY 92 (531)
T ss_pred cCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEE
Confidence 3445555554432222222112223344567788999999999999999999876532 346789999
Q ss_pred cCCCChHHHHHHHHHHhc----------CCcEEEEecchh-------hhhhhcchHH-H---------------HHHHHH
Q 014332 209 GPPGTGKTLLARAVANRT----------DACFIRVIGSEL-------VQKYVGEGAR-M---------------VRELFQ 255 (426)
Q Consensus 209 GppGtGKT~laralA~~l----------~~~~i~v~~~~l-------~~~~~g~~~~-~---------------v~~lf~ 255 (426)
||||||||++|+++++.+ +.+|+.++|... .....+.... . -...+.
T Consensus 93 Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~ 172 (531)
T TIGR02902 93 GPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT 172 (531)
T ss_pred CCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh
Confidence 999999999999998642 468999998632 1111110000 0 000111
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-----------------------CCCCCeEEEE
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-----------------------DARGNIKVLM 312 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-----------------------~~~~~v~vI~ 312 (426)
. ....+|||||++.+ +...|..|+.+++.-.-+ ..+.++.+|+
T Consensus 173 ~---a~gG~L~IdEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ 238 (531)
T TIGR02902 173 R---AHGGVLFIDEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIG 238 (531)
T ss_pred c---cCCcEEEEechhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEE
Confidence 2 23459999999999 788999999888752110 0122455665
Q ss_pred E-eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 014332 313 A-TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 313 a-tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~ 390 (426)
+ |+.++.++|++++ |+ ..+.|+.++.+++.+|++..+++.++. ++-.++.++..+ .+++++.++|+.|+..|.
T Consensus 239 ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 239 ATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIAL 313 (531)
T ss_pred EecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 5 5678999999999 88 478899999999999999999877654 223345566554 378999999999999998
Q ss_pred HHcCCCccHHHHHHHHHH
Q 014332 391 RARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 391 ~~~~~~It~ed~~~A~~~ 408 (426)
.+++..|+.+|+..++..
T Consensus 314 ~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 314 GEGRKRILAEDIEWVAEN 331 (531)
T ss_pred hCCCcEEcHHHHHHHhCC
Confidence 888889999999999863
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.82 E-value=3e-19 Score=194.51 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=168.9
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
+...+-.+++++|.++.+..+.+.+.. ....+++|+||||||||++|+++|.++ +..
T Consensus 174 ~~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~ 240 (731)
T TIGR02639 174 EKAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAK 240 (731)
T ss_pred HHHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCe
Confidence 344566888999999999988877754 345689999999999999999999987 778
Q ss_pred EEEEecchhh--hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 230 FIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 230 ~i~v~~~~l~--~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
++.++++.+. .+|.|+.+..++.+|+.+....++||||||+|.+.+.+.. .+++.+.+..|...+. ++.
T Consensus 241 ~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~-------~g~ 311 (731)
T TIGR02639 241 IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS-------SGK 311 (731)
T ss_pred EEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------CCC
Confidence 9999998887 4789999999999999998888899999999999865422 2233445555544432 578
Q ss_pred eEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHHhCCCCcH--
Q 014332 308 IKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARLCPNSTG-- 375 (426)
Q Consensus 308 v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~-~~v~l~~la~~t~g~sg-- 375 (426)
+.+|++||.. ...|+++.| ||. .|.++.|+.+++.+||+.....+ ++. .+-.+..++..+..|-+
T Consensus 312 i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r 388 (731)
T TIGR02639 312 LRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDR 388 (731)
T ss_pred eEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccc
Confidence 9999999963 357999999 996 79999999999999999766542 221 22345566666666533
Q ss_pred ---HHHHHHHHHHHHHHHHH----cCCCccHHHHHHHHHHH
Q 014332 376 ---ADIRSVCTEAGMFAIRA----RRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 376 ---~di~~l~~~A~~~A~~~----~~~~It~ed~~~A~~~v 409 (426)
.-.-.++.+|+.....+ ....|+.+|+..++...
T Consensus 389 ~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 389 FLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred cCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 23345666666433221 13459999999998775
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.81 E-value=7e-19 Score=192.61 Aligned_cols=221 Identities=22% Similarity=0.335 Sum_probs=151.2
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh---------
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--------- 239 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~--------- 239 (426)
++.|++++++.+.+++...... +...+.+++|+||||||||++|+++|+.++.+|+++++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 5899999999999987653211 112334799999999999999999999999999999765432
Q ss_pred hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHh--cCCC--------CCCCeE
Q 014332 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFD--------ARGNIK 309 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--~~~~--------~~~~v~ 309 (426)
..|+|.....+...|..+....| ||||||||.+.+.. ..+....|+++++.. ..|. ..++++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 24677777777788888776666 89999999997532 112345666666421 1111 125789
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh-----cCCCCC---Ccc---HHHHHHh-CCCCcH--
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-----TMNCER---DIR---FELLARL-CPNSTG-- 375 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~-----~~~~~~---~v~---l~~la~~-t~g~sg-- 375 (426)
+|+|||.++.++++|++ ||. .|+|+.|+.+++..|++.++. ..++.. .++ +..+++. +..+..
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 99999999999999999 994 899999999999999988762 222221 122 3334432 222222
Q ss_pred --HHHHHHHHHHHHHHHHHcC--------CCccHHHHHHHHH
Q 014332 376 --ADIRSVCTEAGMFAIRARR--------KTVTEKDFLDAVN 407 (426)
Q Consensus 376 --~di~~l~~~A~~~A~~~~~--------~~It~ed~~~A~~ 407 (426)
+.+..+|+.++......+. ..|+.+++..-+.
T Consensus 543 l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 4455566666543332221 3688887766654
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.7e-18 Score=176.45 Aligned_cols=207 Identities=18% Similarity=0.248 Sum_probs=152.7
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+.+++++.+|++++|++.++..|+.++.. + +.+..+||+||||||||++|+.+|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 45678999999999999999999999875 1 234568999999999999999999998763
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.+++.. ..+...++++.+.+. .....|+||||+|.+ +.+.+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 22222211 112234455444433 345679999999999 56666
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..+++ +..++++|++|+.+..+.+++++ |+ ..+.|..++.++..+.++..+...++. .+-.+..|++
T Consensus 139 NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 139 NALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666543 56789999999999999999999 88 578999999999999998888766654 3345678888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.++.-+++..+...+ ...||.+++.+.+
T Consensus 211 ~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 211 KGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 8877 5667777777665332 2357877776544
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=99.80 E-value=3.3e-18 Score=178.26 Aligned_cols=213 Identities=27% Similarity=0.343 Sum_probs=154.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
.+|+++++|.++++|+|.+++++.|+.++..... | .+++++|||||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 4688999999999999999999999999975321 2 347899999999999999999999999999999998
Q ss_pred chhhhhhhcchHHHHHHHHHHHHc------CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 236 SELVQKYVGEGARMVRELFQMARS------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
++.... ..++.+...+.. ..+.+|+|||+|.+.+.. +......+..++.. .+..
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~-------~~~~ 132 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK-------AKQP 132 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc-------CCCC
Confidence 865422 122222222221 256799999999985421 33344555555542 3445
Q ss_pred EEEEeCCCCCCCc-cccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014332 310 VLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGM 387 (426)
Q Consensus 310 vI~atn~~~~ld~-al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~ 387 (426)
+|+++|.+..+.+ .+++ |+ ..+.|+.|+..++..+++..+...++. .+..+..|+..+.| |++.+++....
T Consensus 133 iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred EEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 7888898888877 6665 54 689999999999999999988776654 22345677776644 78887776665
Q ss_pred HHHHHcCCCccHHHHHHHH
Q 014332 388 FAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 388 ~A~~~~~~~It~ed~~~A~ 406 (426)
++ .+...|+.+++....
T Consensus 206 ~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 206 IA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred Hh--cCCCCCcHHHHHHhh
Confidence 33 345567777775443
No 58
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.79 E-value=1.4e-18 Score=187.73 Aligned_cols=223 Identities=25% Similarity=0.349 Sum_probs=165.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCcEE
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 231 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~~i 231 (426)
...-.++.++|.++.+.++.+++.. ....++||+||||||||++|+++|... ++.++
T Consensus 180 a~~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~ 246 (758)
T PRK11034 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_pred HHcCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE
Confidence 3455677899999999999998764 245678999999999999999999864 56677
Q ss_pred EEecchhh--hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 232 RVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 232 ~v~~~~l~--~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
.++...++ .+|.|+.+..++.+|..+....++||||||||.+++.+.. .++..+..+.+..++ .++.+.
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L-------~~g~i~ 317 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLL-------SSGKIR 317 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHH-------hCCCeE
Confidence 77776666 4678899999999999988888889999999999876522 122334444444444 357899
Q ss_pred EEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccH-----HHHHHhCC-----CCc
Q 014332 310 VLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRF-----ELLARLCP-----NST 374 (426)
Q Consensus 310 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l-----~~la~~t~-----g~s 374 (426)
+|++|+.++ ..|++|.| ||. .|.++.|+.+++..||+.+...+....++.+ ...+..+. .+-
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~l 394 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccC
Confidence 999999764 57999999 995 8999999999999999988766554444433 22333333 345
Q ss_pred HHHHHHHHHHHHHHHH----HHcCCCccHHHHHHHHHHH
Q 014332 375 GADIRSVCTEAGMFAI----RARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 375 g~di~~l~~~A~~~A~----~~~~~~It~ed~~~A~~~v 409 (426)
+.....++.+|+.... ......|+.+|+.+.+.+.
T Consensus 395 PdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 395 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred hHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 5677788888885432 2234468888888877654
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=3.5e-18 Score=180.36 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=151.2
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
..+++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++++++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 35678999999999999999999999864 1345678999999999999999999988652
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.++.+. ..+...++.+++.+. .....|+||||+|.| +...+
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~ 136 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAF 136 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHH
Confidence 22332221 112334555665543 234579999999999 55666
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
+.|+..|++ ...++++|++||.+..|.+.|++ |+ ..+.|..++.++..++|+..+...++. .+-.+..|++
T Consensus 137 NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777766664 45688999999999999999999 98 689999999999999999888766554 3344677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 404 (426)
.+.| +.++..+++..+..+. ...|+.+++..
T Consensus 209 ~A~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 209 AAQG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 8887 5667777777666432 22355554443
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.79 E-value=1.5e-17 Score=165.24 Aligned_cols=214 Identities=20% Similarity=0.289 Sum_probs=150.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-----CcE
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-----~~~ 230 (426)
.+|.+++.|.+|++++|.+.+++.|..++.. ....+++|+||||||||++|+++++++. .++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 4688999999999999999999999998864 1223699999999999999999999873 356
Q ss_pred EEEecchhhhhh-------------hcc-------hHHHHHHHHHHHHc-----CCCEEEEEeCCCcccCCccCCCCCCC
Q 014332 231 IRVIGSELVQKY-------------VGE-------GARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGD 285 (426)
Q Consensus 231 i~v~~~~l~~~~-------------~g~-------~~~~v~~lf~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~ 285 (426)
+.++++++.... .+. ....++.+...... ..+.+|+|||+|.+ .
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 788887654221 011 11223333322222 23459999999998 4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHH
Q 014332 286 NEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFE 364 (426)
Q Consensus 286 ~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~ 364 (426)
...+..+..+++.. ...+.+|++++.+..+.+.+.+ |+ ..++|++|+.++...+++..+...++. .+..++
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45566666666543 2345677777777777788887 76 578999999999999999988776654 334466
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 365 LLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 365 ~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
.++..+.| +++.+++.....+ .....||.+++.+++.
T Consensus 211 ~l~~~~~g----dlr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 211 LIAYYAGG----DLRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred HHHHHcCC----CHHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 77777744 5555555555444 2334699998887664
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.2e-18 Score=179.77 Aligned_cols=204 Identities=17% Similarity=0.241 Sum_probs=148.6
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+..++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 34678999999999999999999999975 1345678999999999999999999998761
Q ss_pred ---------------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCC
Q 014332 230 ---------------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGG 284 (426)
Q Consensus 230 ---------------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (426)
++.++... ..+-..++++.+.+. .....|+||||+|.|
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------- 136 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------- 136 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------
Confidence 22222221 112334555555433 345679999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC-ccH
Q 014332 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRF 363 (426)
Q Consensus 285 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~-v~l 363 (426)
+...++.|+..|++ ...++++|++||.+..|.+.+++ |+ ..+.|..++.++..+.++..+...++.-+ ..+
T Consensus 137 s~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 137 TNHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred CHHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45555655555543 56788999999999999999999 88 68999999999999988887766554422 235
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 014332 364 ELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 403 (426)
Q Consensus 364 ~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 403 (426)
..|++.+.| +.++..+++..+..+. ...|+.+++.
T Consensus 209 ~~IA~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~ 243 (700)
T PRK12323 209 RLLAQAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVR 243 (700)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 778888877 6678888877665432 2345554443
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.5e-18 Score=174.81 Aligned_cols=207 Identities=17% Similarity=0.235 Sum_probs=147.1
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC----------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---------- 228 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~---------- 228 (426)
.++++|.+|++++|++.+++.|+.++.. -..+.++|||||||||||++|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 3578899999999999999999988865 134667999999999999999999998765
Q ss_pred --------------cEEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 229 --------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 229 --------------~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
.++.++++. ..+-..++.+.+.+.. ....||||||+|.+ ....+.
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~ 135 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFN 135 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHH
Confidence 244444321 1122345555554432 34569999999998 344455
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..++. +.+.+++|++|+.+..+++++++ |+ ..+.|+.|+.++...+++..+...++. .+-.+..|+..
T Consensus 136 ~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 136 ALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555443 35678888888888899999999 88 589999999999999999888765543 23346778887
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
+.| ..+.+.+.+..+..++ + ..||.+++.+++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 755 4445555554433322 2 3499999988774
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=9.2e-18 Score=168.81 Aligned_cols=208 Identities=17% Similarity=0.230 Sum_probs=151.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
..++++|.+|++|+|++.+++.++.++.. | +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 35678899999999999999999999865 1 345678999999999999999999988642
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.++++. ......++.+.+.+.. ....|++|||+|.+ +...+
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~ 136 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSF 136 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHH
Confidence 12222110 0122345555554432 23469999999998 44555
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..++..++. ++..+.+|++|+.++.+.+++++ |+ ..++|++|+.++..++++..++..+.. ++..+..++.
T Consensus 137 naLLk~lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~ 208 (363)
T PRK14961 137 NALLKTLEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY 208 (363)
T ss_pred HHHHHHHhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 566555553 45677888888888889999988 88 689999999999999999888776543 2344667888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
.+.| +.+++.+++..+..+ +...||.+++.+++.
T Consensus 209 ~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 209 HAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8866 667777777766533 456788888877653
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=8.5e-18 Score=175.79 Aligned_cols=206 Identities=17% Similarity=0.201 Sum_probs=153.5
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------- 229 (426)
..++++.+|++|+|++.+++.|..++.. -+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 4578899999999999999999999974 2446788999999999999999999998762
Q ss_pred ---------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
++.++++.- .+...+|.+...+. .....|+||||+|.| +...+.
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~N 136 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFN 136 (702)
T ss_pred cCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 333333211 12334555555442 244579999999999 555666
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..+++ +...+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. .+..+..|++.
T Consensus 137 ALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 137 ALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66666664 45678889999989889889988 88 689999999999999999888776654 33446778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+.| +.+++.+++..+..+ +...||.+++...+
T Consensus 209 S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 209 AQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 866 677887777766532 34568888876643
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.78 E-value=1.1e-17 Score=165.48 Aligned_cols=204 Identities=16% Similarity=0.194 Sum_probs=144.3
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-----CcEE
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFI 231 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-----~~~i 231 (426)
.|+++++|.++++++|++++++.|+.++.. ....++|||||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 478899999999999999999999988764 1234699999999999999999999873 2356
Q ss_pred EEecchhhhhhhcchHHHHHHHHHHH-H------cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 232 RVIGSELVQKYVGEGARMVRELFQMA-R------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~lf~~a-~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
.++.++..+ ...++...... . ...+.|++|||+|.+ ....|..|...++..
T Consensus 69 eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 69 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----
Confidence 666654321 12333332221 1 123579999999999 556677777776542
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~ 383 (426)
...+.+|++||....+.+++++ |+ ..++|+.|+.++....++..++..++. .+..+..++..+.| |++.+++
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 3456688899998899999998 87 589999999999999999888766554 23346677777654 5555544
Q ss_pred HHHHHHHHHcCCCccHHHHHH
Q 014332 384 EAGMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 384 ~A~~~A~~~~~~~It~ed~~~ 404 (426)
.....+ .+...||.+++.+
T Consensus 200 ~Lq~~~--~~~~~i~~~~v~~ 218 (319)
T PLN03025 200 NLQATH--SGFGFVNQENVFK 218 (319)
T ss_pred HHHHHH--hcCCCCCHHHHHH
Confidence 433222 1334577777654
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.78 E-value=1.3e-17 Score=170.63 Aligned_cols=205 Identities=28% Similarity=0.376 Sum_probs=149.7
Q ss_pred cccCCCCccccccCcHHHHHH---HHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 159 VEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~---l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
.+..++.++++++|++..+.. |+.++.. ..+.+++|+||||||||++|+++|+.++..|+.+++
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 456788899999999999777 8888754 234589999999999999999999999999999987
Q ss_pred chhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014332 236 SELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (426)
... +...++.+++.+. .....||||||+|.+ ....+..++..++ .+.+++|
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le-------~~~iilI 124 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVE-------DGTITLI 124 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhh-------cCcEEEE
Confidence 532 2234455555543 235679999999998 5566666666654 2456777
Q ss_pred EEeC--CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC--C-C-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 312 MATN--RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN--C-E-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 312 ~atn--~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~--~-~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
++|+ ....+++++++ |+ ..+.|+.|+.++...+++..+.... + . .+-.+..+++.+.| ..+.+.++++.+
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 7653 34578999999 88 7899999999999999998775421 1 1 12235667777755 455666666665
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 386 GMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 386 ~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
... ...|+.+++..++....
T Consensus 201 ~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 201 ALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHc-----cCCCCHHHHHHHHhhhh
Confidence 433 45689999988887653
No 67
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=5.2e-18 Score=176.71 Aligned_cols=208 Identities=16% Similarity=0.196 Sum_probs=154.9
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+.+++++.+|++|+|++.+++.|+.++.. -..+..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 45678999999999999999999999965 1345678999999999999999999988653
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.++++. ..+-..+|++.+.+. .....|+||||+|.+ +...+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 44444321 112333555555443 234569999999999 55556
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
+.|+..|++ ++..+.+|++|+.+..+.+.+++ |+ ..++|..++..+....++..+...++. .+..+..+++
T Consensus 137 naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 137 NALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 45678899999999999989998 87 678899999999888888888776654 3334677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
.+.| +.+++.+++..+..+ +...||.+++...+.
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 8866 777888888776533 345688887776653
No 68
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.7e-17 Score=175.50 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=152.1
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------- 229 (426)
..++++.+|++|+|++.+++.|+..+.. | +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 4567889999999999999999999875 1 345568999999999999999999998763
Q ss_pred ---------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
++.+++.. ..+-..+|.+.+.+. .+...|+||||+|.| +...++
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~N 137 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFN 137 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHH
Confidence 23333221 012233455444432 345579999999999 566777
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..|++ +.+.+++|++|+.+..|.+.+++ |+ ..+.|..++.++....|+..+...++. .+..+..|+..
T Consensus 138 ALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 138 ALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777764 56788899999999999999999 87 799999999999999999888665544 23446778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+.| +.++..+++..|... +...|+.+++...+
T Consensus 210 s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 210 ADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 877 666787888766533 23346766665544
No 69
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.5e-17 Score=170.68 Aligned_cols=218 Identities=14% Similarity=0.182 Sum_probs=157.6
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE----
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR---- 232 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~---- 232 (426)
.+..++++.+|++++|++.+++.|+.++.. -+.+.++||+||||||||++|+++|+.+++....
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 456778999999999999999999998764 2456789999999999999999999988653210
Q ss_pred --------Eecchhhhh----------hhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 233 --------VIGSELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 233 --------v~~~~l~~~----------~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
-+|-.+... ....+...++.+++.+.. ....|++|||+|.+ +...+.
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~n 146 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFN 146 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHH
Confidence 001111100 001234556777766643 34569999999998 444455
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..++. +...+++|++|+.++.+.+.+++ |+ ..++|..++.++...+++..++..+.. .+..+..++..
T Consensus 147 aLLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 147 ALLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555442 46678888889999999999998 88 578999999999999999999876654 22346778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
+.| +.+++.+++..+..++.. ....||.+++.+.+.
T Consensus 219 s~G-slR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 877 777888888887665421 133588888776653
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.4e-17 Score=177.02 Aligned_cols=190 Identities=18% Similarity=0.208 Sum_probs=142.6
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE--------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------- 230 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------- 230 (426)
.+++++.+|++|+|++.+++.|+.++.. -+.+..+||+||||||||++|+++|+.+++..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 4578899999999999999999999865 13456679999999999999999999987641
Q ss_pred ----------------EEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 231 ----------------IRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 231 ----------------i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
+.+++.. ..+...+|.+...+. .....|+||||+|.| +...+.
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqN 137 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFN 137 (944)
T ss_pred CchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 1111110 012233455544433 234569999999999 667777
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..|++ +..++++|++|+.+..|.+.+++ |+ ..+.|..++.++....|+..+...++. .+-.+..|+..
T Consensus 138 ALLKtLEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 138 ALLKTLEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA 209 (944)
T ss_pred HHHHHHhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777764 56778899999999999999999 88 689999999999999998887664443 22346778888
Q ss_pred CCCCcHHHHHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAG 386 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~ 386 (426)
+.| +.|++.++|..|.
T Consensus 210 S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 210 ANG-SMRDALSLTDQAI 225 (944)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 877 6678888887766
No 71
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.76 E-value=5.1e-17 Score=163.45 Aligned_cols=222 Identities=23% Similarity=0.271 Sum_probs=151.9
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---------CcEEEEecc
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGS 236 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---------~~~i~v~~~ 236 (426)
..++++|.++++++|..++...+. | ..+.+++|+||||||||++++++++++. ..+++++|.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 334699999999999999864221 2 3456899999999999999999998652 568888886
Q ss_pred hhhhh----------hh--cc--------hHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHH
Q 014332 237 ELVQK----------YV--GE--------GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (426)
Q Consensus 237 ~l~~~----------~~--g~--------~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (426)
...+. .. |. ....+..++.... ...+.||+|||+|.+... . +..+.++
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhH
Confidence 54321 11 11 1223444555443 345679999999999621 1 1234455
Q ss_pred HHHhcCC-CCCCCeEEEEEeCCCC---CCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCC---CCccHHH--
Q 014332 296 VNQLDGF-DARGNIKVLMATNRPD---TLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFEL-- 365 (426)
Q Consensus 296 l~~l~~~-~~~~~v~vI~atn~~~---~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~~~---~~v~l~~-- 365 (426)
+...+.. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++...... .+..++.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 4432111 2236789999999875 57788877 775 679999999999999999988631111 1111233
Q ss_pred -HHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 366 -LARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 366 -la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
++..+.|. .+.+..+|+.|+..|..++...||.+|+..|+..+.
T Consensus 231 ~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 231 ALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 33444453 456667899999999888888999999999987763
No 72
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.75 E-value=6.8e-17 Score=159.48 Aligned_cols=210 Identities=20% Similarity=0.265 Sum_probs=143.3
Q ss_pred cccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
..+|.++++|.++++++|.+.+++.++.++.. | ..|..+||+||||+|||++|++++++++..++.++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 35788999999999999999999999999863 2 34566777999999999999999999999999998
Q ss_pred cchhhhhhhcchHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014332 235 GSELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (426)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 313 (426)
++. .. .......+........ ...+.+|+|||+|.+. ..+.+..+..+++.. ..++.+|++
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt 137 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIIT 137 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEE
Confidence 876 11 1111111222111111 1356799999999883 234556666666542 456789999
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC-------CCC-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-------NCE-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 314 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~-------~~~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
||.+..+.+++++ || ..+.|+.|+.+++..+++.++... +.. .+-.+..++....| +++.+++..
T Consensus 138 ~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 138 ANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred cCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHH
Confidence 9999999999999 88 478999999999988877554332 111 11123445554433 555555544
Q ss_pred HHHHHHHcCCCccHHHHHH
Q 014332 386 GMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 386 ~~~A~~~~~~~It~ed~~~ 404 (426)
..++. ...++.+++..
T Consensus 211 ~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 211 QRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHc---cCCCCHHHHHH
Confidence 44331 24566655544
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=4.9e-17 Score=171.50 Aligned_cols=208 Identities=18% Similarity=0.238 Sum_probs=154.6
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE-------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF------- 230 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~------- 230 (426)
...++++.+|++|+|++.+++.|+.++.. -+.+.++||+||+|+|||++|+++|+.+++.-
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 34678999999999999999999999875 14467899999999999999999999876531
Q ss_pred -----------------EEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 231 -----------------IRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 231 -----------------i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
+.++.+ ...+...+++++..+. .....||||||+|.+ +...+
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~ 136 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAF 136 (709)
T ss_pred cccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHH
Confidence 122211 1123345666666543 234579999999998 44555
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..|++ ....+.+|++|+.+..+.+.+++ |+ ..+.|+.++.++...+++..+...++. .+-.+..|++
T Consensus 137 NALLKtLEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 137 NAMLKTLEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred HHHHHHHHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 566666554 45678899999999999999987 88 678889999999999999888877654 2334678888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
.+.| +.+++.+++..+..+ +...|+.+++...+.
T Consensus 209 ~A~G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 209 AAAG-SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HhCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 8866 677888888777654 244688877776654
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.5e-17 Score=167.02 Aligned_cols=206 Identities=16% Similarity=0.251 Sum_probs=154.9
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC----------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---------- 228 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~---------- 228 (426)
..++++.+|+||+|++.+++.|+.++.. -+.+.++||+||+|+|||++|+.+|+.++|
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 3568889999999999999999998865 245778999999999999999999997643
Q ss_pred --------------cEEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 229 --------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 229 --------------~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
.++.++++.- .+-..++.+.+.+.. ..+.|++|||+|.+ +...++
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~N 134 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFN 134 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHH
Confidence 2344444321 133456666665542 34569999999998 445555
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..+++ +...+.+|++|+.++.+.+.+++ |+ ..++|..++.++....++..+...+.. ++..+..|++.
T Consensus 135 aLLK~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 135 ALLKTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555553 45678899999999999999998 88 578999999999999999888776654 33456778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+.| +.+++.+++..+..++ ...||.+++.+.+
T Consensus 207 s~G-slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 207 SSG-SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred cCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 866 7778888888877554 2468888887754
No 75
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.74 E-value=1.4e-16 Score=161.99 Aligned_cols=222 Identities=20% Similarity=0.274 Sum_probs=151.9
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEecchhhh
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQ 240 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~~~~l~~ 240 (426)
..+.+.|.++.+++|...+...+. + ..+.+++|+||||||||++++.+++++ +..+++++|....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 445699999999999999854211 1 345679999999999999999999876 57788998864322
Q ss_pred ----------hhhc--------chHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC
Q 014332 241 ----------KYVG--------EGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (426)
Q Consensus 241 ----------~~~g--------~~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (426)
...+ ........+++.... ..+.||+|||+|.+.... .. ..+..++..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhhhc
Confidence 1111 012233334443332 456799999999996211 11 234444444433
Q ss_pred CCCCCCeEEEEEeCCC---CCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCC---CCCCccHHHHHHhCCCCc
Q 014332 302 FDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMN---CERDIRFELLARLCPNST 374 (426)
Q Consensus 302 ~~~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~---~~~~v~l~~la~~t~g~s 374 (426)
.. ..++.+|+++|.. +.+++.+.+ ||. ..+.|++++.++..+|++.++.... .-.+-.++.+++.+.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 22 2378899998876 356777776 663 5789999999999999998875421 112223466666664332
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 375 --GADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 375 --g~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
.+.+..+|..|+..|..++...|+.+|+..|+..+
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 34556888999999988888999999999999876
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.74 E-value=1.1e-16 Score=169.87 Aligned_cols=219 Identities=20% Similarity=0.301 Sum_probs=151.7
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCcEEEEe
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVI 234 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~~i~v~ 234 (426)
...+.|.|.++++++|..++...+. |-.++..++|+|+||||||++++.+.+++ ...+++++
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 3446799999999999999875332 22233445799999999999999998765 25678999
Q ss_pred cchhhhhh---------h-c-------chHHHHHHHHHHHH--cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHH
Q 014332 235 GSELVQKY---------V-G-------EGARMVRELFQMAR--SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (426)
Q Consensus 235 ~~~l~~~~---------~-g-------~~~~~v~~lf~~a~--~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (426)
|..+...+ + + .....+..+|.... .....||+|||||.|..+ .+..|+.|
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnL 892 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTL 892 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHH
Confidence 85543221 0 1 12345566676552 234569999999999542 35667777
Q ss_pred HHHhcCCCCCCCeEEEEEeCC---CCCCCccccCCCCcce-EEEecCCCHHHHHHHHHHHHhcCC-CCCCccHHHHHHhC
Q 014332 296 VNQLDGFDARGNIKVLMATNR---PDTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLARLC 370 (426)
Q Consensus 296 l~~l~~~~~~~~v~vI~atn~---~~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~~~-~~~~v~l~~la~~t 370 (426)
++... .....+.||+++|. +..|++.+++ ||.. .+.|++++.+++.+||+..+.... .-.+-.++.+|+..
T Consensus 893 FR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 893 FDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred HHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 77543 23457899999986 5677888888 7654 588999999999999999987542 11223356677755
Q ss_pred CCCcHHHHHH---HHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 371 PNSTGADIRS---VCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 371 ~g~sg~di~~---l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
...+| |++. +|+.|+.. ++...|+.+|+.+|+..+.
T Consensus 969 Aq~SG-DARKALDILRrAgEi---kegskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 969 ANVSG-DIRKALQICRKAFEN---KRGQKIVPRDITEATNQLF 1007 (1164)
T ss_pred hhcCC-HHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHH
Confidence 54444 6664 55555543 3456899999999997763
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.74 E-value=1.3e-16 Score=175.52 Aligned_cols=223 Identities=18% Similarity=0.237 Sum_probs=159.2
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
+...+-++++++|.++.+.++.+++.. ....+++|+||||||||++|+.+|..+ +..
T Consensus 179 ~~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~ 245 (852)
T TIGR03345 179 AQAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR 245 (852)
T ss_pred HHhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe
Confidence 344667889999999998888777654 345588999999999999999999975 356
Q ss_pred EEEEecchhhh--hhhcchHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014332 230 FIRVIGSELVQ--KYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (426)
Q Consensus 230 ~i~v~~~~l~~--~~~g~~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (426)
++.++.+.+.. .+.|+.+..++.+|+.+.. ..++||||||+|.+.+.++..+ ..+....|...+ .++
T Consensus 246 i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~n~Lkp~l-------~~G 315 (852)
T TIGR03345 246 LLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG---QGDAANLLKPAL-------ARG 315 (852)
T ss_pred EEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc---cccHHHHhhHHh-------hCC
Confidence 78888877763 6889999999999998864 5678999999999987653221 122222333332 367
Q ss_pred CeEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CC-CCccHHHHHHhCCCCcH-
Q 014332 307 NIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CE-RDIRFELLARLCPNSTG- 375 (426)
Q Consensus 307 ~v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~----~~-~~v~l~~la~~t~g~sg- 375 (426)
.+.+|+||+.. -.+|++|.| ||. .|.++.|+.+++..||+.+...+. +. .+..+..++.++.+|.+
T Consensus 316 ~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~ 392 (852)
T TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPG 392 (852)
T ss_pred CeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccc
Confidence 89999999864 458999999 994 899999999999999876665432 21 23446677788877743
Q ss_pred ----HHHHHHHHHHHHHH-HHHcCCCccHHHHHHHHHH
Q 014332 376 ----ADIRSVCTEAGMFA-IRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 376 ----~di~~l~~~A~~~A-~~~~~~~It~ed~~~A~~~ 408 (426)
.-.-.++.+|+... .......+..+++.+.+..
T Consensus 393 r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~ 430 (852)
T TIGR03345 393 RQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAA 430 (852)
T ss_pred ccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 33345667766543 3334444555555554433
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.4e-16 Score=166.11 Aligned_cols=207 Identities=16% Similarity=0.229 Sum_probs=149.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC---------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--------- 228 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~--------- 228 (426)
+.+++++.+|++++|++.+++.|..++.. -+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 34678899999999999999999999875 134566899999999999999999998764
Q ss_pred ---------------cEEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 229 ---------------CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 229 ---------------~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
.++.+++..- .+...++.+.+.+. .....|+||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~ 136 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSF 136 (546)
T ss_pred cccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHH
Confidence 2233332110 11223344444332 244569999999998 56667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..+++ +...+++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...++. .+..+..++.
T Consensus 137 naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777664 45678888888888888888988 88 799999999999998888887766654 3334567788
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.+++.+++..+..++ + ..|+.+++.+++
T Consensus 209 ~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 209 HAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred HcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 8755 6667777777666442 2 458887777654
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.8e-16 Score=164.93 Aligned_cols=204 Identities=19% Similarity=0.268 Sum_probs=145.9
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc----------
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---------- 229 (426)
.++++.+|++|+|++.+++.|+.++.. -..+..+|||||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 578899999999999999999999875 1345567999999999999999999987541
Q ss_pred -------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHH
Q 014332 230 -------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (426)
Q Consensus 230 -------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (426)
++.++++. ..+...++++...+. ...+.||+|||+|.+ +...+..|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHH
Confidence 33333321 112334555544333 245679999999987 34444444
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCC
Q 014332 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 371 (426)
Q Consensus 293 ~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~ 371 (426)
+..++. ...++++|++|+.+..+.+.+.+ |+ ..+.|+.|+.++...+++..+...++. .+-.+..++..+.
T Consensus 137 Lk~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 137 LKTLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HHHHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 444432 34577888889999999999998 87 489999999999999999988776654 2334677888886
Q ss_pred CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 372 NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 372 g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
| +.+++.++++.+... ...||.+++.+.+
T Consensus 209 G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 209 G-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred C-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 6 455666666665322 3468888877664
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9.3e-17 Score=169.53 Aligned_cols=207 Identities=17% Similarity=0.238 Sum_probs=151.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+..++++.+|++|+|++.+++.|+.++.. .+.+..+||+||+|+|||++|+++|+.++|.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 45678899999999999999999999875 1345678999999999999999999988652
Q ss_pred ---------------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCC
Q 014332 230 ---------------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGG 284 (426)
Q Consensus 230 ---------------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (426)
++.+++.. ..+-..++++.+.+.. ....|++|||+|.|
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 22222111 1123346666655432 33469999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccH
Q 014332 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRF 363 (426)
Q Consensus 285 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l 363 (426)
+...++.|+..+++ ....+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. .+..+
T Consensus 137 s~~a~NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 137 TNTAFNAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred CHHHHHHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45555555544443 45678888898888889889988 87 789999999999999999888776655 22346
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 364 ELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 364 ~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
..|++.+.| +.+++.+++..+..+ +...||.+++.+.+
T Consensus 209 ~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 209 RLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 778888877 667887877666544 34468877776554
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=2.4e-16 Score=161.01 Aligned_cols=219 Identities=22% Similarity=0.340 Sum_probs=145.5
Q ss_pred CCCCcccc-ccCcHHH--HHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014332 162 KPDVTYND-VGGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (426)
Q Consensus 162 ~~~~~~~d-i~G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v 233 (426)
.+..+|++ ++|.+.. ...+.++...| + ....+++||||||+|||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45678888 5564443 23333333321 1 234579999999999999999999976 5778999
Q ss_pred ecchhhhhhhcchHH-HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 014332 234 IGSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (426)
Q Consensus 234 ~~~~l~~~~~g~~~~-~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (426)
++.++...+...... ....+.+..+ .+.+|+|||+|.+.+ ....+..++.+++.+.. .+..+||+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~~~~---~~~~iiit 238 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG---------KERTQEEFFHTFNALHE---NGKQIVLT 238 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCCEEEe
Confidence 988877655433211 1112222222 356999999999854 23445667777766532 22333444
Q ss_pred EeCCCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHH
Q 014332 313 ATNRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 386 (426)
Q Consensus 313 atn~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~ 386 (426)
++..|. .+++.+++ ||. ..+.++.|+.++|..|++..+...++. ++-.++.||....+ +.+++..+++...
T Consensus 239 s~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 239 SDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred cCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 444443 46688888 886 479999999999999999998876554 33346778888765 6778888888877
Q ss_pred HHHHHHcCCCccHHHHHHHHHHH
Q 014332 387 MFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 387 ~~A~~~~~~~It~ed~~~A~~~v 409 (426)
.+|...+ ..||.+.+.+++...
T Consensus 316 ~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 316 AYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHhC-CCCCHHHHHHHHHHh
Confidence 7765444 447777777777654
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.73 E-value=1.8e-16 Score=164.05 Aligned_cols=221 Identities=22% Similarity=0.339 Sum_probs=149.5
Q ss_pred cCCCCcccc-ccCcHH--HHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEE
Q 014332 161 EKPDVTYND-VGGCKE--QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 232 (426)
Q Consensus 161 ~~~~~~~~d-i~G~~~--~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~ 232 (426)
-.+..+|++ ++|... +...++.+...| + ....+++||||||||||+|++++++++ +..+++
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~y 183 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVY 183 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 346678888 445333 444444444331 1 234579999999999999999999987 567889
Q ss_pred EecchhhhhhhcchHHH-HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014332 233 VIGSELVQKYVGEGARM-VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (426)
Q Consensus 233 v~~~~l~~~~~g~~~~~-v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (426)
+++.++...+....... ...+.+..+ .+.+|+|||+|.+.+ ....+..++.+++.+.. .+..+||
T Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~l~~---~~~~iii 249 (450)
T PRK00149 184 VTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG---------KERTQEEFFHTFNALHE---AGKQIVL 249 (450)
T ss_pred EEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCcEEE
Confidence 99988877655443221 122222222 466999999999854 23455667777666532 2333444
Q ss_pred EEeCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 312 MATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 312 ~atn~~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
+++..|.. +++.+.+ ||. ..+++..|+.++|..|++..+...++. ++-.++.||..+.| +.+++..+++..
T Consensus 250 ts~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 250 TSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred ECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 44444443 6788988 885 589999999999999999998765443 23346778888766 677888888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 386 GMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 386 ~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
..+|...+ ..||.+.+.++++...
T Consensus 327 ~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 327 IAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 77766554 4488888888887653
No 83
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.2e-16 Score=166.17 Aligned_cols=206 Identities=21% Similarity=0.245 Sum_probs=148.3
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc----------
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---------- 229 (426)
.++++.+|++|+|++.+++.|+.++.. | +.+..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 678899999999999999999999875 1 345568999999999999999999987642
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.++++.. .+-..++++.+.+. .....|++|||+|.+ +...+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHH
Confidence 222222110 12233444433332 244569999999999 55566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
+.|+..|++ +..++++|++|+.+..+.+.+++ |+ ..+.|..++.++..+++...+...+.. .+..+..++.
T Consensus 136 NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 136 NALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 56688899999999999999998 86 689999999999999998888876654 2234566777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.+++.+++..+..++ +...||.+++...+
T Consensus 208 ~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 7655 6677778777765432 24557776665553
No 84
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.6e-16 Score=173.07 Aligned_cols=206 Identities=20% Similarity=0.184 Sum_probs=147.9
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+..++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+.||+.+.|.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 45789999999999999999999999875 1345568999999999999999999998752
Q ss_pred ------------------EEEEecchhhhhhhcchHHHHHHHHHH----HHcCCCEEEEEeCCCcccCCccCCCCCCChH
Q 014332 230 ------------------FIRVIGSELVQKYVGEGARMVRELFQM----ARSKKACIVFFDEVDAIGGARFDDGVGGDNE 287 (426)
Q Consensus 230 ------------------~i~v~~~~l~~~~~g~~~~~v~~lf~~----a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 287 (426)
|+.+++... .+-..+|++.+. .......|+||||+|.| +..
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 122222110 012233433322 23345679999999999 567
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHH
Q 014332 288 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELL 366 (426)
Q Consensus 288 ~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~l 366 (426)
.++.|+.+|++ ....+++|++|+.++.|-+.|++ |+ ..++|..++.++...+|+..+...++. .+..+..+
T Consensus 136 a~NaLLK~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777777765 45678889999988889999998 87 689999999999999999888766654 22335667
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 014332 367 ARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 367 a~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 404 (426)
++.+.| +.+++.+++......+ +...||.+++..
T Consensus 208 a~~sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred HHHcCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 777765 6667777776654322 344566665443
No 85
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=9.4e-17 Score=168.24 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=151.4
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------- 229 (426)
..++++.+|++|+|++.+++.|..++.. -+.+..+||+||||+|||++|+++|+.+++.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4567889999999999999999999875 1345668999999999999999999988653
Q ss_pred ---------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
++.++++. ..+...++.+...+.. ....|+||||+|.+ +...++
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~n 137 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFN 137 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHH
Confidence 12222110 1123456666665542 33469999999998 445555
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..+++ +...+++|++|+.+..+.+.+++ |+ ..++|+.++.++....+...+...++. .+..+..+++.
T Consensus 138 aLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 138 AMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred HHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555543 45678889999888888888888 87 689999999999999888888765554 22345777888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
+.| +.+++.+++..|..+ +...|+.+++...+.
T Consensus 210 s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 210 AAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 766 667888888777543 355688887776654
No 86
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.72 E-value=8.2e-17 Score=152.43 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=137.6
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc------
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------ 229 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------ 229 (426)
..|++++.+.+|+++.|++.+++.|+..+.. ..-.++|||||||||||+.|+++|+++.++
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 4588999999999999999999999999864 234579999999999999999999998662
Q ss_pred EEEEecchhhhhhhcchHHHHHHHHHHHHc---------CCC-EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHh
Q 014332 230 FIRVIGSELVQKYVGEGARMVRELFQMARS---------KKA-CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL 299 (426)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~---------~~p-~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 299 (426)
+...+.++-.+..++ ...+ .-|..... ++| -|++|||+|.+ ..+.|.+|...++.
T Consensus 91 vl~lnaSderGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~- 155 (346)
T KOG0989|consen 91 VLELNASDERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED- 155 (346)
T ss_pred hhhhcccccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc-
Confidence 233344433322211 1111 11222221 122 69999999999 66778888777663
Q ss_pred cCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHH
Q 014332 300 DGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADI 378 (426)
Q Consensus 300 ~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di 378 (426)
....+++|..||..+.+.+.+.+ |+. .+.|+....+.....|+......++. .+-.+..++..++| |+
T Consensus 156 ----~s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dL 224 (346)
T KOG0989|consen 156 ----FSRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DL 224 (346)
T ss_pred ----cccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cH
Confidence 35678899999999999999999 884 77888888777778888777776665 22345777877766 55
Q ss_pred HHHHHHH
Q 014332 379 RSVCTEA 385 (426)
Q Consensus 379 ~~l~~~A 385 (426)
+......
T Consensus 225 R~Ait~L 231 (346)
T KOG0989|consen 225 RRAITTL 231 (346)
T ss_pred HHHHHHH
Confidence 5544433
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=3.3e-16 Score=165.23 Aligned_cols=204 Identities=21% Similarity=0.311 Sum_probs=150.4
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc----------
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---------- 229 (426)
.+++|.+|++|+|++.+++.|+.++.. ...+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 567899999999999999999999875 1346678999999999999999999987542
Q ss_pred --------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHH
Q 014332 230 --------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 291 (426)
Q Consensus 230 --------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~ 291 (426)
++.++++. +.+...++++...+.. ....|++|||+|.| ....++.
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHH
Confidence 23333221 1234456666666542 34569999999998 3444555
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhC
Q 014332 292 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 370 (426)
Q Consensus 292 l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t 370 (426)
|+..++ .++..+++|++|+.++.+.+.+++ |+ ..++|+.|+..+...+++..+...++. .+..+..++..+
T Consensus 139 LLKtLE-----epp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 139 LLKTLE-----EPPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHhc-----CCCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 554443 245678888888889999999998 88 478999999999999999888776654 223467788888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 371 PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 371 ~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
.| +.+++.+++..+..++ ...||.+++...
T Consensus 211 ~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 211 EG-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 76 6778888887766542 345777766554
No 88
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.6e-17 Score=167.74 Aligned_cols=227 Identities=21% Similarity=0.330 Sum_probs=163.1
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh---------
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--------- 239 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~--------- 239 (426)
|--|++++++++.+++..-... .--...-++|+||||+|||+|++.+|+.++..|++++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 5779999999999988652111 112234588999999999999999999999999999764432
Q ss_pred hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH--hcCC--------CCCCCeE
Q 014332 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ--LDGF--------DARGNIK 309 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--l~~~--------~~~~~v~ 309 (426)
..|+|.-+.++-+-...|....| +++|||||.+++.- .|++ ..+|++.|+- -..| -..++|+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDP--aSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDP--ASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCCh--HHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 24899988888888889988999 99999999996532 2233 3456666532 1111 1245899
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHH-----hcCCCCC-Cc--cHHHHHHhCCCCcH------
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-----RTMNCER-DI--RFELLARLCPNSTG------ 375 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l-----~~~~~~~-~v--~l~~la~~t~g~sg------ 375 (426)
+|+|+|..+.++.+|+. |+ ..|+++-++..+..+|.+.|+ +..++.. .+ .-+.|-.....|+.
T Consensus 469 FiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 99 699999999999999999886 3334432 12 22333333333332
Q ss_pred --HHHHHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhhc
Q 014332 376 --ADIRSVCTEAGMFAIRARRK---TVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 376 --~di~~l~~~A~~~A~~~~~~---~It~ed~~~A~~~v~~~~ 413 (426)
++|..+|+.++..-+..... .|+..++.+-+......+
T Consensus 546 LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~ 588 (782)
T COG0466 546 LEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRY 588 (782)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCc
Confidence 67888888887765554433 477778877776544444
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.9e-16 Score=165.51 Aligned_cols=207 Identities=13% Similarity=0.197 Sum_probs=148.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-------
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------- 229 (426)
.+.++++|.+|++++|++.+++.|..++.. -..+.++||+||+|+|||++|+++|+.+.|.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 466788999999999999999999999864 2446789999999999999999999987541
Q ss_pred -----------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
++.++++. ..+-..++.+...+.. ....|++|||+|.+ +...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A 135 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSA 135 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHH
Confidence 22222211 0122345555554432 23469999999998 4455
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la 367 (426)
+..|+..+++ ++..+++|++|+.+..+.+++++ |+ ..++|+.|+..+...+++..+...+.. .+-.+..++
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666664 45678888899999999999998 87 489999999999999998887765533 223466778
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
..+.| +.+++.+++..+..++ +. .|+.+++...
T Consensus 208 ~lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 208 DLADG-SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HHcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 88766 5666667666644332 22 3777766653
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.3e-16 Score=165.60 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=145.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+.+++++.+|++|+|++.+++.|..++.. + +.+..+||+||||||||++|+.+|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 46778999999999999999999999875 1 235689999999999999999999988653
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.+++..- .+-..++.+.+.+ ......||||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~ 136 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAF 136 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHH
Confidence 333433210 0112233322222 2344579999999999 45556
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..+++ ...++++|++|+.+..+.+.+++ |+ ..+.|+.++.++...+|+..+...++. .+-.+..++.
T Consensus 137 naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 137 NALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666665554 34678899999998888888988 87 478999999999999998877765543 2334667788
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.+++.+++..+. ..+...||.+++..++
T Consensus 209 ~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 7765 4445555555432 2344568888765544
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=2.5e-16 Score=167.57 Aligned_cols=213 Identities=18% Similarity=0.298 Sum_probs=151.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE---E
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR---V 233 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~---v 233 (426)
.+..+++|.+|++|+|++.+++.|+.++.. -+.+..+|||||+|+|||++|+++|+.+.|.--. -
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 356788999999999999999999999975 1346678999999999999999999988653210 0
Q ss_pred ecchhh---hh----h--hc---chHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 234 IGSELV---QK----Y--VG---EGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 234 ~~~~l~---~~----~--~g---~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
.|..+. .. + -+ .+...++.+.+.+.. ....|++|||+|.+ ....+..|+..|+
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLE 143 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLE 143 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhh
Confidence 111110 00 0 00 123446676666543 44579999999998 4445556655555
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHH
Q 014332 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGA 376 (426)
Q Consensus 298 ~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~ 376 (426)
+ ++..+++|++|+.++.|.+.+++ |+ ..++|..|+.++...+++..+...++. .+..+..++..+.| +.+
T Consensus 144 E-----PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 144 E-----PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred c-----CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 3 46678889999999999999998 88 489999999999999998887766654 22336678888866 556
Q ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 377 DIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 377 di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
++.+++..+..++ ...|+.+++.++
T Consensus 215 ~AlslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 215 DALSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7777777655432 233777777654
No 92
>PRK06893 DNA replication initiation factor; Validated
Probab=99.72 E-value=4.7e-16 Score=146.68 Aligned_cols=211 Identities=14% Similarity=0.176 Sum_probs=133.5
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecch
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~ 237 (426)
-.++.+|++++|.+... .+..+... +.. .....++||||||||||||++++|+++ +....++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 45677899977655432 22222111 111 123458999999999999999999985 33444444432
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe-CC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT-NR 316 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at-n~ 316 (426)
.. .....+++... ...+|+|||++.+.+ +...+..+..+++.+. ..+..++|.|+ ..
T Consensus 78 ~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~---~~~~~illits~~~ 135 (229)
T PRK06893 78 SQ--------YFSPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIK---EQGKTLLLISADCS 135 (229)
T ss_pred hh--------hhhHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 11 11112233322 346999999999854 3445667778777654 23333444444 45
Q ss_pred CCCCC---ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 014332 317 PDTLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 317 ~~~ld---~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~ 392 (426)
|..++ +.+.+..+++..+.++.|+.++|.+|++..+...++. ++.-...|++++.| +.+.+..++......+...
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~ 214 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA 214 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc
Confidence 65554 7888844455799999999999999999887655443 23345778888876 5667777777665444433
Q ss_pred cCCCccHHHHHHHH
Q 014332 393 RRKTVTEKDFLDAV 406 (426)
Q Consensus 393 ~~~~It~ed~~~A~ 406 (426)
+ +.||...+.+++
T Consensus 215 ~-~~it~~~v~~~L 227 (229)
T PRK06893 215 Q-RKLTIPFVKEIL 227 (229)
T ss_pred C-CCCCHHHHHHHh
Confidence 3 469988887765
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.72 E-value=2.7e-16 Score=157.61 Aligned_cols=208 Identities=22% Similarity=0.330 Sum_probs=148.6
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-------
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------- 229 (426)
.+.+++++.+|++++|++.+++.|.+++.. | ..+..+|||||||+|||++|+++|+.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 70 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP 70 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 356778999999999999999999998864 1 346679999999999999999999987532
Q ss_pred -----------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
++.+++.. ......++.+++.+.. ....|++|||+|.+ +...
T Consensus 71 c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~ 133 (355)
T TIGR02397 71 CNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSA 133 (355)
T ss_pred CCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHH
Confidence 23333221 1123346666666543 23459999999998 3334
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la 367 (426)
+..++.. ++. +..++++|++|+.++.+.+++++ |+ ..++|+.|+.++...+++.+++..+.. ++-.+..++
T Consensus 134 ~~~Ll~~---le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 134 FNALLKT---LEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHHHHHH---HhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444 432 45678888888988888899988 87 588999999999999999988876654 223456677
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
..+.| +.+.+.+.++.+..++ ...||.+++.+++
T Consensus 206 ~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 206 RAADG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred HHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 77755 5666766666665543 2348888776654
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.71 E-value=2.9e-16 Score=169.09 Aligned_cols=212 Identities=22% Similarity=0.247 Sum_probs=145.9
Q ss_pred cccccCCCCccccccCcHHHHH---HHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+.+..++.++++++|++..+. .|+.++.. ....+++||||||||||++|+++|+.++.+|+.+
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 3556778899999999999985 56666653 2345799999999999999999999999999888
Q ss_pred ecchhhhhhhcchHHHHHHHHHHH-----HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 014332 234 IGSELVQKYVGEGARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (426)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~lf~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (426)
++... +...++..+..+ ......+|||||+|.+ +...|..|+..++ .+.+
T Consensus 84 na~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~I 138 (725)
T PRK13341 84 NAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTI 138 (725)
T ss_pred hhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceE
Confidence 87531 111223333332 1234569999999998 5556666665543 3457
Q ss_pred EEEEEeCC--CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc-------CCCC-CCccHHHHHHhCCCCcHHHH
Q 014332 309 KVLMATNR--PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT-------MNCE-RDIRFELLARLCPNSTGADI 378 (426)
Q Consensus 309 ~vI~atn~--~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~-------~~~~-~~v~l~~la~~t~g~sg~di 378 (426)
++|++|+. ...+++++++ |+ ..+.|++++.+++..+++..+.. ..+. .+-.++.|+..+.| +.+.+
T Consensus 139 iLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~l 214 (725)
T PRK13341 139 TLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSL 214 (725)
T ss_pred EEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHH
Confidence 77776643 3568899998 75 57899999999999999988762 1121 12235667777755 55677
Q ss_pred HHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHH
Q 014332 379 RSVCTEAGMFAIRAR--RKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 379 ~~l~~~A~~~A~~~~--~~~It~ed~~~A~~~v~ 410 (426)
.++++.|...+.... ...||.+++.+++.+..
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 777776654332122 12378888888876643
No 95
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.71 E-value=5.2e-16 Score=153.01 Aligned_cols=208 Identities=21% Similarity=0.281 Sum_probs=143.9
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-----CcE
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-----~~~ 230 (426)
.+|.+++.|.+|++++|.+++++.++.++.. + ...+++||||||||||++++++++++. ..+
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~ 71 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENF 71 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccce
Confidence 4689999999999999999999999999864 1 223589999999999999999999873 345
Q ss_pred EEEecchhhhhhhcchHHHHHHHH-HHHHc-----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 231 IRVIGSELVQKYVGEGARMVRELF-QMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~lf-~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
+.+++++.. ....++..+ ..+.. ..+.+|+|||+|.+ ....+..+..+++..
T Consensus 72 i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~----- 129 (319)
T PRK00440 72 LELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY----- 129 (319)
T ss_pred EEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC-----
Confidence 555443321 111222222 22221 23469999999998 344556666665432
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~ 383 (426)
..++.+|+++|.+..+.+++.+ |+. .++|+.|+.++...+++.+++..++. .+-.+..++..+.| +.+.+.+.++
T Consensus 130 ~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~ 205 (319)
T PRK00440 130 SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQ 205 (319)
T ss_pred CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3346677888888888888888 775 68999999999999999998876654 33456778887755 3444444444
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHH
Q 014332 384 EAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 384 ~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
.+... ...||.+++..++.
T Consensus 206 ~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 206 AAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHc-----CCCCCHHHHHHHhC
Confidence 43322 35688888877653
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.71 E-value=6.4e-16 Score=144.99 Aligned_cols=203 Identities=20% Similarity=0.281 Sum_probs=140.3
Q ss_pred CCcccccc--CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 164 DVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 164 ~~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
+.+|++++ +.+..++.+++++.. ..+.+++|+||+|||||++|+++++++ +.++++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 45666654 567788888887642 356789999999999999999999876 578889998877
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-C
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-P 317 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~ 317 (426)
.... ..++.... .+.+|+|||+|.+.. +...+..+..+++.+.. .+. .+|++++. +
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~-~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGG-RLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCC-eEEEECCCCh
Confidence 5432 22333222 235999999999832 22346677777765432 122 45556553 3
Q ss_pred CCCC---ccccCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 318 DTLD---PALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 318 ~~ld---~al~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
..++ +.+.+ |+ ...+.+|+|+.+++..+++.+....+.. ++-.+..|+..++| +.+++.++++.+...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence 3332 66776 65 4789999999999999999887655443 22335677776554 788999999998876655
Q ss_pred HcCCCccHHHHHHHH
Q 014332 392 ARRKTVTEKDFLDAV 406 (426)
Q Consensus 392 ~~~~~It~ed~~~A~ 406 (426)
.+ ..||.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 44 569988877654
No 97
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-17 Score=176.79 Aligned_cols=164 Identities=26% Similarity=0.425 Sum_probs=134.2
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCC----CcceEecCCCChHHHHHHHHHHhcC---CcEEEEecchhhhh-
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPP----KGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK- 241 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~----~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l~~~- 241 (426)
|+|+++++..+..+|.. .+.|+..| .++||.||+|+|||-||+++|..+. ..++++++|++..+
T Consensus 493 ViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 493 VIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred eeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 99999999999999987 56676433 4688999999999999999999985 89999999999775
Q ss_pred ----hhcchHHHH-----HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC------C
Q 014332 242 ----YVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR------G 306 (426)
Q Consensus 242 ----~~g~~~~~v-----~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~------~ 306 (426)
.+|.++.++ ..+.+..+.+++|||+||||++. ++++.+.|+|.|+...-.+.. .
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 355554443 25677778888999999999997 899999999999875443443 3
Q ss_pred CeEEEEEeCCC----------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 307 NIKVLMATNRP----------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 307 ~v~vI~atn~~----------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
|++||+|||-- ..+.|++++ |+|.+|.|.+.+.+...+|+...+..
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 68899999841 234567777 99999999999999999999888754
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.70 E-value=1.7e-15 Score=143.46 Aligned_cols=207 Identities=15% Similarity=0.185 Sum_probs=136.7
Q ss_pred cCCCCcccccc--CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEec
Q 014332 161 EKPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIG 235 (426)
Q Consensus 161 ~~~~~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~ 235 (426)
-.++.+|++.+ +...++..++.+... ....+++||||||||||||++++++++. ..+.++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 34556777754 455566667666543 2345799999999999999999998753 44555555
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
...... ..++.+.... ..+|+|||++.+.+ +...+..+..+++.+. ..++..+|+|++
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCC
Confidence 443211 1122222222 24899999999853 4556667777776653 234444566655
Q ss_pred C-CCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014332 316 R-PDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF 388 (426)
Q Consensus 316 ~-~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~ 388 (426)
. |.. +.|.|++ |+. ..+.+..|+.+++.++++.+....++. ++--++.|+++++| +.+.+..++......
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~ 216 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRA 216 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 4 443 6789999 875 699999999999999999866654443 23346778888876 667888888876434
Q ss_pred HHHHcCCCccHHHHHHHH
Q 014332 389 AIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 389 A~~~~~~~It~ed~~~A~ 406 (426)
+.. ..+.||.+.+.+++
T Consensus 217 ~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 217 SIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHh-cCCCCCHHHHHHHH
Confidence 433 33559988887765
No 99
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.8e-16 Score=160.54 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=147.8
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+..+++|.+|++++|++.+++.|+.++.. -..+..+|||||+|+|||++|+.+|..+++.
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 45678899999999999999999999965 1345568999999999999999999987641
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.++++ ...+...++.+.+.+. ...+.|++|||+|.+ +...+
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaa------s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~ 136 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAA------SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAF 136 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCc------cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHH
Confidence 1111111 0112233455544443 234569999999998 34445
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..++. ++..+++|++|+.++.+.+++++ |+. .+.|+.|+.++...+++.+++..++. .+-.+..++.
T Consensus 137 naLLk~LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~ 208 (486)
T PRK14953 137 NALLKTLEE-----PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQ 208 (486)
T ss_pred HHHHHHHhc-----CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 45567788888888888889988 874 79999999999999999988877655 2234567777
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.+++.++++.+..+ +...||.+++.+++
T Consensus 209 ~s~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 209 ASEG-GMRDAASLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7765 566777777776544 23458888777754
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.70 E-value=1.6e-15 Score=142.70 Aligned_cols=203 Identities=16% Similarity=0.212 Sum_probs=140.2
Q ss_pred cCCCCcccccc--CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 161 EKPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 161 ~~~~~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
..++.+|+++. +.+.++..++.+.. +.....+++|+||+|||||+||+++++++ +..++.+++
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34556788855 44566666666654 23456789999999999999999999975 668888887
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
..+... +.. ...+.+|+|||+|.+ +...+..+..+++... ..+..++|++++
T Consensus 79 ~~~~~~------------~~~--~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~---~~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLA------------FDF--DPEAELYAVDDVERL-----------DDAQQIALFNLFNRVR---AHGQGALLVAGP 130 (227)
T ss_pred HHhHHH------------Hhh--cccCCEEEEeChhhc-----------CchHHHHHHHHHHHHH---HcCCcEEEEeCC
Confidence 765321 111 223459999999988 3445667777776654 233444555555
Q ss_pred CC---CCCCccccCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014332 316 RP---DTLDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 316 ~~---~~ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A 389 (426)
.+ ..+.+.+.+ || ...+.+++|+.+++..+++.+....++. ++-.+..|+...+| +.+++..+++.....|
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 32 235567776 76 4699999999999999998877655443 22345677777666 6779999988876666
Q ss_pred HHHcCCCccHHHHHHHHH
Q 014332 390 IRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 390 ~~~~~~~It~ed~~~A~~ 407 (426)
...+ ..||...+.+++.
T Consensus 208 ~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 LEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHhC-CCCCHHHHHHHHh
Confidence 5544 6799888887764
No 101
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=9.4e-16 Score=159.27 Aligned_cols=206 Identities=19% Similarity=0.250 Sum_probs=151.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+.++++|.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45678999999999999999999999865 2 356678999999999999999999987421
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.++++. ..+-..++++...+.. ....|++|||+|.+ +.+.+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 22222211 0123455655554321 23459999999999 56667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..+++ ++..+.+|++|+.+..+.+++++ |+ ..++|..++.++....++..+...+.. .+-.+..++.
T Consensus 135 NALLK~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 135 NALLKTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777664 35678888888888999999999 86 689999999999999888888776654 2345677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
.+.| +.+++.+++..|..++ ...||.+++...
T Consensus 207 ~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 207 SGNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 8766 7778888888777654 335676666544
No 102
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.70 E-value=3.2e-16 Score=172.75 Aligned_cols=172 Identities=25% Similarity=0.346 Sum_probs=137.0
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
+...+-.+++++|.++.++++.+++.. ....+++|+||||||||++|+++|... +.+
T Consensus 170 ~~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~ 236 (857)
T PRK10865 170 ERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 236 (857)
T ss_pred HHHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCE
Confidence 345566888999999998888887754 345679999999999999999999987 678
Q ss_pred EEEEecchhh--hhhhcchHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014332 230 FIRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (426)
Q Consensus 230 ~i~v~~~~l~--~~~~g~~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (426)
++.++...++ .+|.|+.+..++.+|..+. ...++||||||+|.+.+.+... +..+.+..|...+ .++
T Consensus 237 ~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~~~~lkp~l-------~~g 306 (857)
T PRK10865 237 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL-------ARG 306 (857)
T ss_pred EEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhHHHHhcchh-------hcC
Confidence 9999888876 4688999999999998754 4568899999999998655321 2334444444333 467
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC
Q 014332 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (426)
Q Consensus 307 ~v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~ 357 (426)
.+.+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...+..
T Consensus 307 ~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 307 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred CCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 899999999875 48999999 997 6889999999999999987765443
No 103
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=4.2e-16 Score=157.46 Aligned_cols=184 Identities=21% Similarity=0.308 Sum_probs=130.3
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE---------------
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--------------- 230 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--------------- 230 (426)
.|++|+|++.+++.|+.++..+... +..++...+.++||+||||+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5889999999999999999875432 2223445678899999999999999999999775431
Q ss_pred --------EEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 014332 231 --------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (426)
Q Consensus 231 --------i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (426)
..+.... . .-+-..++.+++.+.. ....|+||||+|.+ +...++.|+..+++
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc
Confidence 1111110 0 1123346777776653 34469999999999 55566666666653
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHH
Q 014332 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADI 378 (426)
Q Consensus 299 l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di 378 (426)
++.++++|.+|+.++.+.|.+++ |+ ..+.|+.|+.++..+++.... +.. ......++..+.|..++.+
T Consensus 144 -----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 144 -----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred -----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 45566677777779999999999 88 699999999999887776322 332 2335678888888777544
Q ss_pred HH
Q 014332 379 RS 380 (426)
Q Consensus 379 ~~ 380 (426)
..
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 43
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=4.8e-16 Score=164.70 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=150.7
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------- 229 (426)
..++++.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+++.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4578899999999999999999999875 2 456678999999999999999999987642
Q ss_pred ---------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
++.+++.. ..+...++++.+.+.. ....|++|||+|.+ +...++
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~n 137 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFN 137 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHH
Confidence 33333221 1123345666555432 33469999999998 455566
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..|++ +..++++|++|+.++.|.+.+++ |+ ..++|..++..+....+...++..++. .+-.+..+++.
T Consensus 138 aLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 138 ALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred HHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66666664 46688899999999999999998 87 588999999999988888888766654 33456778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
+.| +.+++.+++..+..++ + ..||.+++...
T Consensus 210 a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 210 GDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred cCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 876 5567777776655443 2 34777776554
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.2e-15 Score=153.79 Aligned_cols=214 Identities=17% Similarity=0.245 Sum_probs=146.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
.+.++++|.+|++++|++.+++.+...+.. | ..+.++|||||||+|||++|+++|+.+.++.....+.
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 356788999999999999999999999975 2 3567899999999999999999999876522111000
Q ss_pred hh------hhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014332 237 EL------VQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (426)
Q Consensus 237 ~l------~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (426)
.+ .......+...++.+++.+.. ..+.||+|||+|.+ ....+..++..+ +. +..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~l---e~--~~~ 137 (367)
T PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTL---EE--PPA 137 (367)
T ss_pred CCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHH---hC--CCC
Confidence 00 000011223456666765542 34569999999988 333344444444 32 345
Q ss_pred CeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 307 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 307 ~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
.+++|++|+.+..+.+++.+ |+ ..++|+.|+.++...++...+...++. ++-.+..++..+.| +.+.+.+.++..
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 66777888888889999988 76 478999999999999998888776653 33456777777755 555666666655
Q ss_pred HHHHHHHcCCCccHHHHHHHH
Q 014332 386 GMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 386 ~~~A~~~~~~~It~ed~~~A~ 406 (426)
..++ +.. ||.+++...+
T Consensus 214 ~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 214 VTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred HHhc---CCC-CCHHHHHHHh
Confidence 5443 223 7777766554
No 106
>PRK08727 hypothetical protein; Validated
Probab=99.69 E-value=3.7e-15 Score=140.98 Aligned_cols=208 Identities=16% Similarity=0.245 Sum_probs=134.1
Q ss_pred cCCCCccccc-cCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 161 EKPDVTYNDV-GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 161 ~~~~~~~~di-~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
..+..+|++. +|.+.....+..... + .....++|+||+|||||+|++++++++ +...++++..
T Consensus 12 ~~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 3455677774 444444444443321 1 133569999999999999999998764 5566666654
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
++.. .+...++... ...+|+|||++.+.+ ....+..++.+++.... .+..+|+|+|.
T Consensus 79 ~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~~----~~~~vI~ts~~ 135 (233)
T PRK08727 79 AAAG--------RLRDALEALE--GRSLVALDGLESIAG---------QREDEVALFDFHNRARA----AGITLLYTARQ 135 (233)
T ss_pred Hhhh--------hHHHHHHHHh--cCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH----cCCeEEEECCC
Confidence 4332 2223444333 335999999999854 23445667777776531 23446666664
Q ss_pred -CCC---CCccccCCCCc--ceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014332 317 -PDT---LDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 317 -~~~---ld~al~r~gRf--~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A 389 (426)
|.. +++.+++ || ...+.++.|+.+++..|++.+....++. ++-.+..|+..+.| ..+.+.++++.....+
T Consensus 136 ~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~ 212 (233)
T PRK08727 136 MPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRES 212 (233)
T ss_pred ChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 444 4789998 86 4688999999999999999877544443 23345678888765 3445555566655445
Q ss_pred HHHcCCCccHHHHHHHHHH
Q 014332 390 IRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 390 ~~~~~~~It~ed~~~A~~~ 408 (426)
...+ +.||.+.+.+.+..
T Consensus 213 ~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 213 LAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHhC-CCCCHHHHHHHHhh
Confidence 5444 46999888877653
No 107
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.5e-15 Score=156.55 Aligned_cols=207 Identities=17% Similarity=0.243 Sum_probs=143.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
..+++++.+|++|+|++.+++.|+.++.. -..+.++|||||||+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 34667889999999999999999999875 1346779999999999999999999987542
Q ss_pred -----------------EEEEecchhhhhhhcchHHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
++.+++... .+-..++.+.+.. ......|++|||+|.+ ....
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~ 137 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEA 137 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHH
Confidence 333332211 0112333332222 2345679999999998 4445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la 367 (426)
+..|+..++. +...+++|++|+.+..+.+++++ |+ ..++|+.++.++...++...++..+.. ....+..++
T Consensus 138 ~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 138 FNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555553 45678888888988999999998 88 579999999999999888887766543 233467788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
..+.| +.+.+.+.++.+..+ .+ ..|+.+++.+++
T Consensus 210 ~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 210 RAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 88765 444555555544322 12 347777665543
No 108
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.69 E-value=7.4e-16 Score=148.59 Aligned_cols=210 Identities=26% Similarity=0.408 Sum_probs=147.9
Q ss_pred cccCCCCccccccCcHHHHHH---HHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---EEE
Q 014332 159 VEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIR 232 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~---l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---~i~ 232 (426)
.+.-++.+++|.+|+++...+ |+.+|+. ..-.+++||||||||||+||+.++.....+ |+.
T Consensus 129 aermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 345567788999998887644 4444443 234579999999999999999999987655 666
Q ss_pred EecchhhhhhhcchHHHHHHHHHHHHc-----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 233 VIGSELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 233 v~~~~l~~~~~g~~~~~v~~lf~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
+++. .....-+|.+|+.++. +...|||||||+.+ +...|.+++-.++ .+.
T Consensus 196 lSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~ 250 (554)
T KOG2028|consen 196 LSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGD 250 (554)
T ss_pred Eecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCc
Confidence 6543 2345668889988864 45579999999999 5566666665543 567
Q ss_pred eEEEEEe--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC--------CC------CCccHHHHHHhCC
Q 014332 308 IKVLMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN--------CE------RDIRFELLARLCP 371 (426)
Q Consensus 308 v~vI~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~--------~~------~~v~l~~la~~t~ 371 (426)
+.+|++| |..-.|+.+|++ |+ +++.+...+..+...||..-...++ +. ++--++.++..++
T Consensus 251 I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred eEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 8899877 555789999999 87 6788888888998888887544221 11 1112567888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHc---CCCccHHHHHHHHHHH
Q 014332 372 NSTGADIRSVCTEAGMFAIRAR---RKTVTEKDFLDAVNKV 409 (426)
Q Consensus 372 g~sg~di~~l~~~A~~~A~~~~---~~~It~ed~~~A~~~v 409 (426)
|=..+.+..+--.+.+.+.+.+ +..++.+|+.+++..-
T Consensus 328 GDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 328 GDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 8666655554444445555554 4568999998888653
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=2.2e-15 Score=159.36 Aligned_cols=216 Identities=17% Similarity=0.186 Sum_probs=155.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe-
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI- 234 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~- 234 (426)
.....++++.+|++|+|++.+++.|..++.. -+.+.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~ 79 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG 79 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC
Confidence 3456778999999999999999999999875 245778999999999999999999998876432111
Q ss_pred ------c------chhhhhh----------hcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 235 ------G------SELVQKY----------VGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 235 ------~------~~l~~~~----------~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
| ..+.... ...+-..+|++.+.+.. ....|++|||+|.+ +...
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a 148 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAA 148 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHH
Confidence 0 0000000 00123456666665543 33569999999999 4455
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la 367 (426)
++.|+..|++ +...+++|++|+.++.+.+.+++ |+ ..++|..|+.++...+++..+...+.. .+..+..|+
T Consensus 149 ~naLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 149 FNALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5666655554 45678888888888888889988 87 589999999999999999888776654 223456778
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
..+.| +.+++.+++..+..+ +...||.+++...+.
T Consensus 221 ~~a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHcCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 88866 667888877776543 234688888887653
No 110
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=2e-15 Score=157.89 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=149.0
Q ss_pred cCCCCcccccc-CcHHH--HHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEE
Q 014332 161 EKPDVTYNDVG-GCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 232 (426)
Q Consensus 161 ~~~~~~~~di~-G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~ 232 (426)
-.+..+|++++ |-... ...+..++..+ + .....++|||++|+|||+|++++++++ +..+++
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~avae~~----------~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Y 349 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAP----------A-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRY 349 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHHhCc----------c-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 34667888854 44332 23344443321 1 123459999999999999999999976 568899
Q ss_pred EecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 014332 233 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (426)
Q Consensus 233 v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~ 312 (426)
+++.+|+..+...........|..- -..+.+|+||||+.+.+ ....+..++.+++.+.. . +..||+
T Consensus 350 itaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~g---------ke~tqeeLF~l~N~l~e---~-gk~III 415 (617)
T PRK14086 350 VSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLED---------KESTQEEFFHTFNTLHN---A-NKQIVL 415 (617)
T ss_pred eeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccC---------CHHHHHHHHHHHHHHHh---c-CCCEEE
Confidence 9999888776544322222234322 23457999999999964 34556777788877652 2 223556
Q ss_pred EeCCC----CCCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 313 ATNRP----DTLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 313 atn~~----~~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
|+|.+ ..+++.|.+ ||. ..+.+..|+.+.|..||+.++...++. ++--++.|+.+..+ +.++|..++...
T Consensus 416 TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 416 SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 77654 467889998 874 577999999999999999998776655 22335677777765 567888888877
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 386 GMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 386 ~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
..+|...+ ..||.+.+.++++.+.
T Consensus 493 ~a~a~~~~-~~itl~la~~vL~~~~ 516 (617)
T PRK14086 493 TAFASLNR-QPVDLGLTEIVLRDLI 516 (617)
T ss_pred HHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 66665544 4477777666666543
No 111
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=1.3e-15 Score=168.05 Aligned_cols=202 Identities=26% Similarity=0.354 Sum_probs=150.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCcEE
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 231 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~~i 231 (426)
...-.++.++|.++.++++.+++.. ..+++++|+||||||||++|+++|... +.+++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4455788899999999999999865 456789999999999999999999975 47899
Q ss_pred EEecchhh--hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 232 RVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 232 ~v~~~~l~--~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
.++++.++ .+|.|+.+..++.+|+.+....++||||||||.+.+.+... ++......|...+ .++.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l-------~rg~l~ 309 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPAL-------ARGELQ 309 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHH-------hCCCcE
Confidence 99998887 47889999999999999988888999999999998755321 2223344443333 367899
Q ss_pred EEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCC-CCccHHHHHHhCCCCcH----
Q 014332 310 VLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCE-RDIRFELLARLCPNSTG---- 375 (426)
Q Consensus 310 vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~-~~v~l~~la~~t~g~sg---- 375 (426)
+|++|+... ..|+++.+ ||. .|.++.|+.++...|++..... .++. .+-.+..++.++.+|.+
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 999998753 57899999 995 6899999999999988754432 2222 22235566666766643
Q ss_pred -HHHHHHHHHHHHHH
Q 014332 376 -ADIRSVCTEAGMFA 389 (426)
Q Consensus 376 -~di~~l~~~A~~~A 389 (426)
.-.-.++.+|+...
T Consensus 387 Pdkaidlld~a~a~~ 401 (821)
T CHL00095 387 PDKAIDLLDEAGSRV 401 (821)
T ss_pred chHHHHHHHHHHHHH
Confidence 33445666666543
No 112
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.2e-16 Score=160.33 Aligned_cols=167 Identities=26% Similarity=0.429 Sum_probs=131.7
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh--------
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-------- 239 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~-------- 239 (426)
+|--|++++++++.++|.....+ |-..++-+.|+||||+|||+++|+||+.+|..|++++-..+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999998753221 333456789999999999999999999999999999764432
Q ss_pred -hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH------hcCC----CCCCCe
Q 014332 240 -QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ------LDGF----DARGNI 308 (426)
Q Consensus 240 -~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~------l~~~----~~~~~v 308 (426)
..|+|.-+.++-+.+....-..| +++|||||.+++ +..|++ ..+|+++|+- +|.+ -.-++|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-----g~qGDP--asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-----GHQGDP--ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-----CCCCCh--HHHHHHhcChhhccchhhhccccccchhhe
Confidence 24888888888788888888888 999999999973 112233 3567776632 1111 124579
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHH
Q 014332 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (426)
Q Consensus 309 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l 352 (426)
++|||+|..+.++++|+. |+ ..|+++-+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999999 99 699999999999999999887
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.6e-15 Score=159.69 Aligned_cols=206 Identities=19% Similarity=0.270 Sum_probs=147.6
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------- 229 (426)
..+++|.+|++|+|++.+++.|+.++.. | ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 3567899999999999999999999975 1 346679999999999999999999988652
Q ss_pred ---------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHH
Q 014332 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (426)
Q Consensus 230 ---------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (426)
++.+++.. ..+-..++.+.+.+. .....|++|||+|.+ +...+.
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~n 137 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFN 137 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHH
Confidence 22222110 012234455544332 345569999999998 444455
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~ 369 (426)
.|+..++ .++..+++|++|+.+..+.+++++ |+. .++|..++.++...+++..+...++. .+..+..|+..
T Consensus 138 aLLK~LE-----epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 138 ALLKTIE-----EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHhhc-----cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5544444 356788889998888999999998 884 78999999999999998888766554 23446678888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 370 CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 370 t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+.| +.+++.+++..+..++ ...||.+++..++
T Consensus 210 s~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 210 STG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred cCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 766 6677777777665442 2457777666643
No 114
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1e-15 Score=155.68 Aligned_cols=210 Identities=14% Similarity=0.207 Sum_probs=147.2
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------- 229 (426)
.+.++|.+|++|+|++.+++.|+.++.. | +.+.++|||||||+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 4568899999999999999999999874 2 456679999999999999999999988663
Q ss_pred -----------------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCC
Q 014332 230 -----------------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGV 282 (426)
Q Consensus 230 -----------------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~ 282 (426)
++.+++.. ..+...++++.+.+. .....|+||||+|.+
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l--------- 139 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML--------- 139 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC---------
Confidence 11111110 011344555554442 233469999999998
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCc
Q 014332 283 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDI 361 (426)
Q Consensus 283 ~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v 361 (426)
+...+..++..++ .+...+++|++|+.+..+-+++++ |+ ..++|+.++.++....++..++..+.. .+-
T Consensus 140 --~~~~~~~LLk~LE-----ep~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 140 --SIAAFNAFLKTLE-----EPPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred --CHHHHHHHHHHHh-----cCCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3444555555544 244567777788778888888887 77 478999999999988888887765543 233
Q ss_pred cHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHH
Q 014332 362 RFELLARLCPNSTGADIRSVCTEAGMFAIR-ARRKTVTEKDFLDAV 406 (426)
Q Consensus 362 ~l~~la~~t~g~sg~di~~l~~~A~~~A~~-~~~~~It~ed~~~A~ 406 (426)
.+..++..+.| +.+.+.+.++.+..++.. .....||.+++.+.+
T Consensus 210 al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 46777888866 566777777776655532 234578888776654
No 115
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=2.9e-15 Score=165.71 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=151.5
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
+...+-.++.++|.++.+.++.+.+.. ....+++|+||||||||++|+++|... +.+
T Consensus 165 ~~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~ 231 (852)
T TIGR03346 165 ERAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKR 231 (852)
T ss_pred HHhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCe
Confidence 345666888999999998888887754 345678999999999999999999975 678
Q ss_pred EEEEecchhh--hhhhcchHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014332 230 FIRVIGSELV--QKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (426)
Q Consensus 230 ~i~v~~~~l~--~~~~g~~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (426)
++.++...++ .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+... +..+..+.|..+ -.++
T Consensus 232 ~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~-------l~~g 301 (852)
T TIGR03346 232 LLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPA-------LARG 301 (852)
T ss_pred EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchh-------hhcC
Confidence 8888888876 46889999999999998865 458899999999997644221 122333333222 2467
Q ss_pred CeEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCc-----cHHHHHHhCCCCcH-
Q 014332 307 NIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-----RFELLARLCPNSTG- 375 (426)
Q Consensus 307 ~v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v-----~l~~la~~t~g~sg- 375 (426)
.+.+|++|+.. -.+|+++.| ||. .|.++.|+.+++..|++.+...+.....+ .+..++.++.+|..
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~ 378 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD 378 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence 89999999876 358999999 995 68999999999999999887765543332 34555666666633
Q ss_pred ----HHHHHHHHHHHHHH
Q 014332 376 ----ADIRSVCTEAGMFA 389 (426)
Q Consensus 376 ----~di~~l~~~A~~~A 389 (426)
.-.-.++.+|+..+
T Consensus 379 r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 379 RFLPDKAIDLIDEAAARI 396 (852)
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 33445666666543
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.66 E-value=3.4e-15 Score=153.51 Aligned_cols=221 Identities=20% Similarity=0.307 Sum_probs=143.8
Q ss_pred cCCCCcccccc-CcHHH--HHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEE
Q 014332 161 EKPDVTYNDVG-GCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 232 (426)
Q Consensus 161 ~~~~~~~~di~-G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~ 232 (426)
-.+..+|++.+ |-... ...+.++...| | ...+++||||||+|||+|++++++++ +..+++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP----------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc----------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 35677888855 53332 23333333221 1 13469999999999999999999975 467888
Q ss_pred EecchhhhhhhcchH-HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014332 233 VIGSELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (426)
Q Consensus 233 v~~~~l~~~~~g~~~-~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (426)
+++.++...+..... ..+.. |.......+.+|+|||++.+.+ ....+..+..+++.+. ..+..+||
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~---------~~~~q~elf~~~n~l~---~~~k~iIi 232 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG---------KTGVQTELFHTFNELH---DSGKQIVI 232 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC---------cHHHHHHHHHHHHHHH---HcCCeEEE
Confidence 998887766543221 11222 3222223567999999999854 2334556666666553 22333444
Q ss_pred EEeCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHH
Q 014332 312 MATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 312 ~atn~~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A 385 (426)
++.+.|.. +.+.+.+ ||. ..+.+.+|+.+.|..|++..+...++. ++-.++.|+....| +.++|..++...
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 44455543 5577888 774 588999999999999999988754433 22336778887766 667888888877
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 386 GMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 386 ~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
...|...+ ..||.+...++++...
T Consensus 310 ~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 310 LVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 66665444 4478777777777654
No 117
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.66 E-value=2.8e-15 Score=163.34 Aligned_cols=221 Identities=15% Similarity=0.246 Sum_probs=146.3
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh--------
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-------- 240 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-------- 240 (426)
+..|++++++.+.+++..... .+-..+..++|+||||+|||++++.+|+.++.+|++++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 489999999999988764211 11123456999999999999999999999999999988665422
Q ss_pred -hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHh------cCC----CCCCCeE
Q 014332 241 -KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL------DGF----DARGNIK 309 (426)
Q Consensus 241 -~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l------~~~----~~~~~v~ 309 (426)
.|.|.....+...+..+....| |++|||+|.+.... ....+..|+++++.- |.+ -..++++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 3555555555555655554555 89999999996432 112356777777531 111 1347899
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc-----CCCC-C--Ccc---HHHHHHh-CCCCcHHH
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT-----MNCE-R--DIR---FELLARL-CPNSTGAD 377 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~-----~~~~-~--~v~---l~~la~~-t~g~sg~d 377 (426)
+|+|+|.. .++++|++ || ..|.|+.++.++..+|.+.|+-. .+.. . .++ ...++.. +..+-.|.
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 99999887 59999999 99 58999999999999999988831 1111 1 122 2334432 22222244
Q ss_pred HH----HHHHHHHHHHHHHc---CCCccHHHHHHHHHH
Q 014332 378 IR----SVCTEAGMFAIRAR---RKTVTEKDFLDAVNK 408 (426)
Q Consensus 378 i~----~l~~~A~~~A~~~~---~~~It~ed~~~A~~~ 408 (426)
++ ++|+.+....+..+ ...|+.+++.+.+..
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 44 45544443333232 236888888777654
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.66 E-value=6e-16 Score=167.39 Aligned_cols=163 Identities=21% Similarity=0.331 Sum_probs=124.3
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCC----CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-----
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ----- 240 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~----- 240 (426)
|+|++++++.|.+++... ..|+ +|..++||+||||||||++|+++|..++.+|+.++++++..
T Consensus 460 ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred EeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 899999999999999752 2233 23356999999999999999999999999999999988743
Q ss_pred hhhcchHHHH-----HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CCCCeE
Q 014332 241 KYVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIK 309 (426)
Q Consensus 241 ~~~g~~~~~v-----~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v~ 309 (426)
..+|.....+ ..+....+..+.+||||||||.+ +++++..|+++++...-.+ .-.+++
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 3344322111 22344445667799999999998 7889999999998542111 124788
Q ss_pred EEEEeCCC-------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh
Q 014332 310 VLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (426)
Q Consensus 310 vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~ 353 (426)
+|+|||.- ..+.|+|+. |+|.+|.|++.+.++..+|+..++.
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 235677777 9999999999999999999987764
No 119
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.65 E-value=4.7e-15 Score=142.68 Aligned_cols=190 Identities=25% Similarity=0.354 Sum_probs=128.1
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch------hhhhhhcchHHHH-H--------------------HH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE------LVQKYVGEGARMV-R--------------------EL 253 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~------l~~~~~g~~~~~v-~--------------------~l 253 (426)
...++||+||||||||++|+++|..++.+++.+++.. ++..+.+.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4578999999999999999999999999999998754 3333322211111 1 11
Q ss_pred HHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CC-------CCCCCeEEEEEeCCC-----
Q 014332 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF-------DARGNIKVLMATNRP----- 317 (426)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~-------~~~~~v~vI~atn~~----- 317 (426)
+. |.. .+.+|+|||++.+ +++.+..|+.++++.. +. ....++.||+|+|..
T Consensus 100 ~~-A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TL-AVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22 222 2359999999998 7889999999887521 10 122467899999975
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHH------HhCC-CCcHHHHHHHHHHHHHHHH
Q 014332 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLA------RLCP-NSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 318 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la------~~t~-g~sg~di~~l~~~A~~~A~ 390 (426)
..+++++++ || ..+.++.|+.++-.+|++.+.. .... ..+.+. +... -...+ ++..+.-|...+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~ 238 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSG-LRASLMIAEVATQ 238 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHH
Confidence 356889999 98 6899999999999999998752 2221 111111 1011 11111 4555555555555
Q ss_pred HHcCCCccHHHHHHHHHHHHh
Q 014332 391 RARRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 391 ~~~~~~It~ed~~~A~~~v~~ 411 (426)
...+..++.+||.+.+..|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 239 QDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred cCCCCCCCcHHHHHHHHHHhc
Confidence 566888999999999988864
No 120
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=5.8e-15 Score=149.87 Aligned_cols=220 Identities=24% Similarity=0.246 Sum_probs=139.2
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHh--hCC-CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhcc
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVK--LGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 245 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~--~g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g~ 245 (426)
|+|++.+++.|..++..+..+-..... -.. .+..++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 999999999998777432221100000 011 24578999999999999999999999999999999988764 57776
Q ss_pred h-HHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCC---CCCChHHHHHHHHHHHHhc------C--CCCCCCeE
Q 014332 246 G-ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDG---VGGDNEVQRTMLEIVNQLD------G--FDARGNIK 309 (426)
Q Consensus 246 ~-~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~~l~------~--~~~~~~v~ 309 (426)
. +..+..+++.+ ....++||||||||.+..++...+ .-+...+|+.|+++|+.-. + ..+..+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 33445554432 234678999999999976632211 1123468888998886311 0 01112345
Q ss_pred EEEEeCCCC----------------------------------------------------CCCccccCCCCcceEEEec
Q 014332 310 VLMATNRPD----------------------------------------------------TLDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 310 vI~atn~~~----------------------------------------------------~ld~al~r~gRf~~~i~~~ 337 (426)
+|.|+|... -+.|+|+. |++..+.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 555554300 03445554 999999999
Q ss_pred CCCHHHHHHHHHH----HHhc-------CCCC---CCccHHHHHHh--CCCCcHHHHHHHHHHHHHHHHH
Q 014332 338 LPDLESRTQIFKI----HTRT-------MNCE---RDIRFELLARL--CPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 338 ~P~~~er~~Il~~----~l~~-------~~~~---~~v~l~~la~~--t~g~sg~di~~l~~~A~~~A~~ 391 (426)
..+.++..+|+.. .+++ .++. .+-.++.|++. ..++-.+.|+.+++....-...
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999999973 2221 1121 11224556664 3344557777777766654443
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=8.6e-15 Score=155.13 Aligned_cols=216 Identities=14% Similarity=0.217 Sum_probs=146.4
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR------ 232 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~------ 232 (426)
..++++.+|++|+|++.+++.|+.++.. -.-+.++||+||+|||||++|+++|+.+.+.--.
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 3567899999999999999999998865 2456679999999999999999999998763100
Q ss_pred ----Eecch------hh-------hhhhcc---hHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 233 ----VIGSE------LV-------QKYVGE---GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 233 ----v~~~~------l~-------~~~~g~---~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
-.|.. +. ..+.|. +...++.+.+.+. .....|++|||+|.+ +...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a 143 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAA 143 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHH
Confidence 00000 00 001111 1344555554442 234469999999998 4444
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la 367 (426)
+..|+..|++ +...+++|++|+.+..+-+.+++ |+ ..++|..++.++....+...+...+.. .+..+..++
T Consensus 144 ~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555553 44567778888888888889988 77 689999999999988888877765543 334467788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIR-ARRKTVTEKDFLDAV 406 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~-~~~~~It~ed~~~A~ 406 (426)
..+.| +.+++.+.+.....++.. .....||.+++.+.+
T Consensus 216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 88865 555666666655544311 124568877776654
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=9.9e-15 Score=155.30 Aligned_cols=190 Identities=18% Similarity=0.258 Sum_probs=137.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+.+++++.+|++++|++.+++.|..++.. + +.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE 73 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence 45678889999999999999999999875 1 234579999999999999999999998663
Q ss_pred ------------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChH
Q 014332 230 ------------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNE 287 (426)
Q Consensus 230 ------------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 287 (426)
++.++. ..+.+...++++...+.. ....|+||||+|.| +.+
T Consensus 74 ~Cg~C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~ 136 (620)
T PRK14948 74 PCGKCELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STA 136 (620)
T ss_pred CCcccHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHH
Confidence 111211 112334567777766643 33469999999999 455
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHH
Q 014332 288 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELL 366 (426)
Q Consensus 288 ~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~l 366 (426)
.+..|+..++ .+...+++|++|+.+..+-+.+++ |+ ..++|+.++.++....+...+.+.+.. ....+..+
T Consensus 137 a~naLLK~LE-----ePp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~L 208 (620)
T PRK14948 137 AFNALLKTLE-----EPPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLV 208 (620)
T ss_pred HHHHHHHHHh-----cCCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 5666655555 355678888888888889999998 88 578999999888888777776654433 22346677
Q ss_pred HHhCCCCcHHHHHHHHHHH
Q 014332 367 ARLCPNSTGADIRSVCTEA 385 (426)
Q Consensus 367 a~~t~g~sg~di~~l~~~A 385 (426)
+..+.| +.+++.++++..
T Consensus 209 a~~s~G-~lr~A~~lLekl 226 (620)
T PRK14948 209 AQRSQG-GLRDAESLLDQL 226 (620)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 888766 345555555543
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=1.2e-14 Score=149.20 Aligned_cols=226 Identities=13% Similarity=0.242 Sum_probs=142.8
Q ss_pred CCCCcccccc-CcHHHH--HHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 162 KPDVTYNDVG-GCKEQI--EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 162 ~~~~~~~di~-G~~~~~--~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
.|..+|++.+ |..... ..++++...+- ..+-.+.++++||||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~-------~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSE-------QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccc-------cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 5677888854 544432 34444433210 0011233679999999999999999999976 688889988
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
..+...+.......-...|.... ..+.+|+|||++.+.+ ....+..+..+++.+.. .+. .+|+|++
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~---------k~~~qeelf~l~N~l~~---~~k-~IIlts~ 243 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG---------KGATQEEFFHTFNSLHT---EGK-LIVISST 243 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC---------ChhhHHHHHHHHHHHHH---CCC-cEEEecC
Confidence 87766543322111112343322 3456999999999854 33456667777765531 223 4555665
Q ss_pred C-C---CCCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHH-
Q 014332 316 R-P---DTLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGM- 387 (426)
Q Consensus 316 ~-~---~~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~- 387 (426)
. | ..+++.+++ ||. ..+.++.|+.++|..|++..+...++. ++-.++.++....+ +.+++..++...+.
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~ 320 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKR 320 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 4 4 457789998 885 788999999999999999998876644 22234556776655 44566665555531
Q ss_pred HHHHH-cCCCccHHHHHHHHHHHHh
Q 014332 388 FAIRA-RRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 388 ~A~~~-~~~~It~ed~~~A~~~v~~ 411 (426)
.|... ....||.+++.+++.....
T Consensus 321 ~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 321 VAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 22222 2345888888888776543
No 124
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.63 E-value=6.8e-15 Score=147.12 Aligned_cols=240 Identities=23% Similarity=0.286 Sum_probs=157.0
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhh-CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhc-ch
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 246 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g-~~ 246 (426)
|+|++++++.+..++.....+..+...+ .-.+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 8999999999988876432222111111 1225689999999999999999999999999999999998874 6777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 014332 247 ARMVRELFQMAR-------------------------------------------------------------------- 258 (426)
Q Consensus 247 ~~~v~~lf~~a~-------------------------------------------------------------------- 258 (426)
+..++.+|+.|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666665540
Q ss_pred -----------------------------------------------------------------------cCCCEEEEE
Q 014332 259 -----------------------------------------------------------------------SKKACIVFF 267 (426)
Q Consensus 259 -----------------------------------------------------------------------~~~p~Il~i 267 (426)
.....||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred eCCCcccCCccCC-CCCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEEeC----CCCCCCccccCCCCcceEEEec
Q 014332 268 DEVDAIGGARFDD-GVGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMATN----RPDTLDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 268 DEiD~l~~~r~~~-~~~~~~~~~~~l~~ll~~l-----~~~~~~~~v~vI~atn----~~~~ld~al~r~gRf~~~i~~~ 337 (426)
||||+++.+.... ..-+...+|+.|+.+++-- .+.-...++.+|++.- .|..|-|.|.- ||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 9999999765222 2223455788877776431 1123456788888763 46667777865 999999999
Q ss_pred CCCHHHHHHHHH--------HHHh---cCCCC---CCccHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHHc---
Q 014332 338 LPDLESRTQIFK--------IHTR---TMNCE---RDIRFELLARLC-------PNSTGADIRSVCTEAGMFAIRAR--- 393 (426)
Q Consensus 338 ~P~~~er~~Il~--------~~l~---~~~~~---~~v~l~~la~~t-------~g~sg~di~~l~~~A~~~A~~~~--- 393 (426)
.++.++..+||. .|.. ..++. .+-.+..+|+.. .+.-.+-|+.++.....-+.-..
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~ 411 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDL 411 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCC
Confidence 999999998882 2222 22221 122345555443 34444667766666554433222
Q ss_pred ---CCCccHHHHHHHHHHHHh
Q 014332 394 ---RKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 394 ---~~~It~ed~~~A~~~v~~ 411 (426)
.-.|+.+.+...+..+..
T Consensus 412 ~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 412 SGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred CCCEEEECHHHHHhHHHHHHh
Confidence 124777777777666543
No 125
>PRK05642 DNA replication initiation factor; Validated
Probab=99.63 E-value=4.3e-14 Score=133.77 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=123.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCcc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~ 278 (426)
...++||||+|+|||||++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcC---
Confidence 4679999999999999999999864 5678888887775431 1233333322 4899999998854
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHh
Q 014332 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTR 353 (426)
Q Consensus 279 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~ 353 (426)
.+..+..+..+++.+. ..+..++|+++..|. ...|.+++ ||. ..+.+..|+.+++..+++....
T Consensus 112 ------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 112 ------KADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3455667888887653 234455555554453 34688988 874 6788899999999999996665
Q ss_pred cCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 354 TMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 354 ~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
..++. ++--.+.|+.+..+ +.+.+..++......+... .+.||..-+.+++
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~-~~~it~~~~~~~L 232 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA-QRKLTIPFLKETL 232 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHh
Confidence 54443 23345677887766 6778888887776545443 3558988777665
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=4.9e-15 Score=161.63 Aligned_cols=199 Identities=21% Similarity=0.297 Sum_probs=140.5
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCC---C-CcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh---
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---P-KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 241 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~-~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~--- 241 (426)
.|+|++++++.+.+.+.. .+.|+.. | .++||+||||||||++|+++|..++.++++++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 488999999999888864 2334432 3 358999999999999999999999999999999987543
Q ss_pred --hhcchHH-----HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CCCCe
Q 014332 242 --YVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 308 (426)
Q Consensus 242 --~~g~~~~-----~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~~~v 308 (426)
.+|.... ..+.+.+..+..+.+||+|||+|.+ +++++..|+++++...-.+ .-.++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 2332211 1223455556677899999999998 7889999999987642111 23468
Q ss_pred EEEEEeCCC-------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-------
Q 014332 309 KVLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN------- 356 (426)
Q Consensus 309 ~vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~------- 356 (426)
++|+|||.. ..+.|.++. |++.++.|.+.+.++..+|++..+..+.
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 899999863 125667776 9999999999999999999998875321
Q ss_pred CC---CCccHHHHHHh--CCCCcHHHHHHHHHHHHHH
Q 014332 357 CE---RDIRFELLARL--CPNSTGADIRSVCTEAGMF 388 (426)
Q Consensus 357 ~~---~~v~l~~la~~--t~g~sg~di~~l~~~A~~~ 388 (426)
+. .+-..+.|+.. ...+..+.|+.+++.-..-
T Consensus 674 ~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~ 710 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKK 710 (731)
T ss_pred CeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHH
Confidence 11 11123445543 3344556777766655443
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=2.7e-14 Score=147.08 Aligned_cols=190 Identities=16% Similarity=0.268 Sum_probs=136.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEecchhhhhhhcchHH---HHHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGAR---MVRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~~~~l~~~~~g~~~~---~v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4579999999999999999999954 5678899998888776544222 222222222 34569999999998
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC----CCCCccccCCCCcc--eEEEecCCCHHHHHHH
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP----DTLDPALLRPGRLD--RKVEFGLPDLESRTQI 347 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~----~~ld~al~r~gRf~--~~i~~~~P~~~er~~I 347 (426)
.+ ....+..+..+++.+.. .+. .+|+|++.+ ..+++.|.+ ||. ..+.+..|+.++|..|
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~---~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIE---NDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHH---cCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 54 45567778888877642 222 466666653 346788888 885 5888999999999999
Q ss_pred HHHHHhcCCCC---CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHHHHH
Q 014332 348 FKIHTRTMNCE---RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-RKTVTEKDFLDAVNKV 409 (426)
Q Consensus 348 l~~~l~~~~~~---~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~-~~~It~ed~~~A~~~v 409 (426)
++..+...++. ++-.++.|+..+.| +.+.+..+|+.+...|.... ...||.+.+.++++..
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 99999865531 22335677888766 77899999999887776653 2568888888887765
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.5e-14 Score=153.90 Aligned_cols=206 Identities=15% Similarity=0.227 Sum_probs=142.9
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE--------
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------- 230 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~-------- 230 (426)
.+++++.+|++|+|++.+++.|+.++.. + ..+..+|||||+|+|||++|+++|+.+++..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4678999999999999999999998874 1 3455689999999999999999999876422
Q ss_pred -----------------EEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 231 -----------------IRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 231 -----------------i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
+.++.+. ..+...++++.+.+. .....||||||+|.| +.+.+
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~ 137 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAF 137 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHH
Confidence 1122110 011233444444332 233569999999998 44445
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..|+..++. ....+++|++++..+.+.+.+++ |+ ..++|+.++..+...++...+...++. .+-.+..++.
T Consensus 138 naLLk~LEe-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 138 NALLKTLEE-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555443 34567788888888888888888 77 478999999999999888887766543 2234567788
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.+++.+.++....+ ....||.+++...+
T Consensus 210 ~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 210 AATG-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 8766 666777766654432 23468888776543
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=2.2e-15 Score=166.22 Aligned_cols=165 Identities=25% Similarity=0.384 Sum_probs=123.5
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCC----CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~ 241 (426)
.|+|++.+++.+..++.. .+.|+. |...+||+||+|||||++|+++|+.+ +.++++++++++...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRR--------ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK 581 (821)
T ss_pred cCcChHHHHHHHHHHHHH--------HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc
Confidence 389999999999999875 233332 22358999999999999999999987 468999999887432
Q ss_pred -----hhcchHHH-----HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------CC
Q 014332 242 -----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------AR 305 (426)
Q Consensus 242 -----~~g~~~~~-----v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~~ 305 (426)
.+|..+.. ...+.+..+.++.+||+|||+|.+ ++.+++.|+++++...-.+ ..
T Consensus 582 ~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEec
Confidence 23322111 234556667777799999999998 7899999999988642111 23
Q ss_pred CCeEEEEEeCCCCC-------------------------------------CCccccCCCCcceEEEecCCCHHHHHHHH
Q 014332 306 GNIKVLMATNRPDT-------------------------------------LDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (426)
Q Consensus 306 ~~v~vI~atn~~~~-------------------------------------ld~al~r~gRf~~~i~~~~P~~~er~~Il 348 (426)
.++++|+|||.... +.|.|++ |+|.++.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 57899999985311 2345666 99999999999999999999
Q ss_pred HHHHhc
Q 014332 349 KIHTRT 354 (426)
Q Consensus 349 ~~~l~~ 354 (426)
+..+..
T Consensus 729 ~~~l~~ 734 (821)
T CHL00095 729 EIMLKN 734 (821)
T ss_pred HHHHHH
Confidence 877754
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.62 E-value=7.1e-15 Score=145.19 Aligned_cols=222 Identities=18% Similarity=0.275 Sum_probs=143.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-------CC--cEEE
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DA--CFIR 232 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-------~~--~~i~ 232 (426)
+.+..|++|+|++.+++.+.-++.. ....++||+||||||||++|+++++-+ ++ .+..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 4567899999999999988765432 112589999999999999999999987 33 2221
Q ss_pred Eecc---------hhhhh---------------hhcch--HHHHH---HHHHHH--HcCCCEEEEEeCCCcccCCccCCC
Q 014332 233 VIGS---------ELVQK---------------YVGEG--ARMVR---ELFQMA--RSKKACIVFFDEVDAIGGARFDDG 281 (426)
Q Consensus 233 v~~~---------~l~~~---------------~~g~~--~~~v~---~lf~~a--~~~~p~Il~iDEiD~l~~~r~~~~ 281 (426)
+.+. .+... .+|.. ...+. ..|+.- ......+||+||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------- 140 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------- 140 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC--------
Confidence 1110 00000 11100 00000 001100 0111249999999998
Q ss_pred CCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCCCH-HHHHHHHHHH
Q 014332 282 VGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIH 351 (426)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~~-~er~~Il~~~ 351 (426)
++..|..|++.+++-. |. ....++++|+++|..+ .++++++. ||...+.++.|.. ++|.+|++..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 7889999999887532 21 2345688888888654 68889999 9999999998866 8999999875
Q ss_pred HhcCC----C------CC---------------Cc--c---HH---HHHHh--CCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 014332 352 TRTMN----C------ER---------------DI--R---FE---LLARL--CPNSTGADIRSVCTEAGMFAIRARRKT 396 (426)
Q Consensus 352 l~~~~----~------~~---------------~v--~---l~---~la~~--t~g~sg~di~~l~~~A~~~A~~~~~~~ 396 (426)
..... + .. .+ + .. .++.. ++| ..+++. +++.|...|+.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcCCCe
Confidence 32110 0 00 00 0 11 12222 233 345666 8899999999999999
Q ss_pred ccHHHHHHHHHHHHh
Q 014332 397 VTEKDFLDAVNKVIK 411 (426)
Q Consensus 397 It~ed~~~A~~~v~~ 411 (426)
|+.+|+..+..-++.
T Consensus 294 V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 294 VGRSHLRSVATMALS 308 (334)
T ss_pred eCHHHHHHHHHHhhh
Confidence 999999988866653
No 131
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.5e-14 Score=140.76 Aligned_cols=217 Identities=20% Similarity=0.326 Sum_probs=154.9
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-----EEEEecchhhhhh
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-----FIRVIGSELVQKY 242 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-----~i~v~~~~l~~~~ 242 (426)
+.+.+.++++.++..++...+. ...|.++++|||||||||.+++.+++++... +++++|..+.+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 3489999999999999765332 2345569999999999999999999987433 8999997654432
Q ss_pred ---------------hcc-hHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014332 243 ---------------VGE-GARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (426)
Q Consensus 243 ---------------~g~-~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (426)
.|. .......+++.... ...-||++||+|.|..+. +..|+.|+...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc--c
Confidence 111 12233334443333 455699999999997533 16777777765543 5
Q ss_pred CCeEEEEEeCCC---CCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCCC---CccHHHHHH---hCCCCcH
Q 014332 306 GNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCER---DIRFELLAR---LCPNSTG 375 (426)
Q Consensus 306 ~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~~~~---~v~l~~la~---~t~g~sg 375 (426)
.++.+|+.+|.. +.+++.+.+ ++. ..|.||+++.+|...|++......-... +--++.+|. ...| ..
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DA 231 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DA 231 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cH
Confidence 678899999875 678898887 554 4689999999999999998886432221 112333443 3333 34
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 376 ADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 376 ~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+-.-.+|+.|+..|.++++..++.+++..|...+
T Consensus 232 R~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 4555799999999999999999999999995544
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.61 E-value=2.3e-14 Score=134.24 Aligned_cols=199 Identities=24% Similarity=0.398 Sum_probs=126.0
Q ss_pred CCCcccccc-Cc--HHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEe
Q 014332 163 PDVTYNDVG-GC--KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI 234 (426)
Q Consensus 163 ~~~~~~di~-G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~ 234 (426)
|..||++.+ |- ..+...++.+...+ + .....++||||+|+|||+|+++++++. +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 567888863 53 33344444444331 1 123459999999999999999999864 67789999
Q ss_pred cchhhhhhhcchHH-HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014332 235 GSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (426)
Q Consensus 235 ~~~l~~~~~g~~~~-~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 313 (426)
+.++...+...... .+..+....+ ...+|+||+++.+.+ ....+..+..+++.+. ..+..+||.+
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~---~~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFNRLI---ESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHH---HTTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHHHHH---hhCCeEEEEe
Confidence 98887765443222 1222222222 345999999999954 4567888888888765 2344444444
Q ss_pred eCCCCC---CCccccCCCCcce--EEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHH
Q 014332 314 TNRPDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGM 387 (426)
Q Consensus 314 tn~~~~---ld~al~r~gRf~~--~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~ 387 (426)
...|.. +++.|.+ ||.. .+.+..|+.+.|..|++..+...++. ++--.+.|+....+ +.++|..+++....
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 445544 5677877 7754 88999999999999999998877665 22235667777755 67788888887665
Q ss_pred HH
Q 014332 388 FA 389 (426)
Q Consensus 388 ~A 389 (426)
++
T Consensus 215 ~~ 216 (219)
T PF00308_consen 215 YA 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 133
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.61 E-value=1.4e-14 Score=144.94 Aligned_cols=239 Identities=22% Similarity=0.278 Sum_probs=156.1
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCC-CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhc-ch
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 246 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g-~~ 246 (426)
|+|++++++.+..++.....+..+...... ..|.++||+||||||||++|+++|..++.+|+.++++.+.. .|+| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 999999999999888542221111111110 13689999999999999999999999999999999998886 6888 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 014332 247 ARMVRELFQMAR-------------------------------------------------------------------- 258 (426)
Q Consensus 247 ~~~v~~lf~~a~-------------------------------------------------------------------- 258 (426)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 666666666661
Q ss_pred --c--------------------------------------------------------------------CCCEEEEEe
Q 014332 259 --S--------------------------------------------------------------------KKACIVFFD 268 (426)
Q Consensus 259 --~--------------------------------------------------------------------~~p~Il~iD 268 (426)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 123599999
Q ss_pred CCCcccCCccCC-CCCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEEe----CCCCCCCccccCCCCcceEEEecC
Q 014332 269 EVDAIGGARFDD-GVGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMAT----NRPDTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 269 EiD~l~~~r~~~-~~~~~~~~~~~l~~ll~~l-----~~~~~~~~v~vI~at----n~~~~ld~al~r~gRf~~~i~~~~ 338 (426)
|||+++.+.... ..-+...+|+.|+.+++-- .+.-...++.+|++. ..|..|-|.|.- ||...+.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 999999765321 2223455788777776431 012345678888875 346677788875 9999999999
Q ss_pred CCHHHHHHHHH--------HHHh---cCCCC---CCccHHHHHHhC-------CCCcHHHHHHHHHHHHHHHHHHc----
Q 014332 339 PDLESRTQIFK--------IHTR---TMNCE---RDIRFELLARLC-------PNSTGADIRSVCTEAGMFAIRAR---- 393 (426)
Q Consensus 339 P~~~er~~Il~--------~~l~---~~~~~---~~v~l~~la~~t-------~g~sg~di~~l~~~A~~~A~~~~---- 393 (426)
++.++..+||. .|.. ..++. .+-.+..+|+.. .+.-.+-|+.++.....-+.-..
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~~ 414 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMS 414 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCCC
Confidence 99999998883 2222 11221 122345555443 23334667766666654433221
Q ss_pred --CCCccHHHHHHHHHHHH
Q 014332 394 --RKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 394 --~~~It~ed~~~A~~~v~ 410 (426)
.-.|+.+-+...+..+.
T Consensus 415 ~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 415 GETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred CCEEEECHHHHHHHHHHHH
Confidence 12477777766666554
No 134
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.61 E-value=5.7e-14 Score=149.92 Aligned_cols=220 Identities=23% Similarity=0.333 Sum_probs=144.1
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCcE
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~~ 230 (426)
..++.+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 35577899999999999988776643 235679999999999999999998755 4579
Q ss_pred EEEecchhhh-------hhhcchHH----HHHHHHHH----------HHcCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 231 IRVIGSELVQ-------KYVGEGAR----MVRELFQM----------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 231 i~v~~~~l~~-------~~~g~~~~----~v~~lf~~----------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
+.++|..+.. ...|.... ..+..+.. .......+|||||++.| +...|
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHH
Confidence 9999876521 11111100 00000110 01123459999999998 78888
Q ss_pred HHHHHHHHHhcC------C-----------------CCCCCeEEEEEe-CCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 014332 290 RTMLEIVNQLDG------F-----------------DARGNIKVLMAT-NRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (426)
Q Consensus 290 ~~l~~ll~~l~~------~-----------------~~~~~v~vI~at-n~~~~ld~al~r~gRf~~~i~~~~P~~~er~ 345 (426)
..++.+++.-.- + .....+++|++| +.++.++++|++ ||. .+.|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 888888875210 0 012245666655 567889999998 985 6789999999999
Q ss_pred HHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH--------cCCCccHHHHHHHHHHH
Q 014332 346 QIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA--------RRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 346 ~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~--------~~~~It~ed~~~A~~~v 409 (426)
.|++..+...+.. .+-.++.|+..+. .++...+++..+...+..+ ....|+.+|+.+++..-
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 9999998865432 1223345555442 3444444444444333211 12369999999998753
No 135
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.60 E-value=4.7e-14 Score=136.06 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=101.6
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCCccccCCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 329 (426)
|.||||||+|.| +-+....|...++. .-..++|+|||+ |.-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 678888888888 66666666655542 334568899997 6777888887 7
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 330 f~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
+ ..|...+++.++.++|+++..+...+. .+-.++.|+.....-|-+..-+|+.-|...|.++++..|..+|+.+|..-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 7 578888899999999999999876665 34456778877777777888899999999999999999999999998764
Q ss_pred H
Q 014332 409 V 409 (426)
Q Consensus 409 v 409 (426)
+
T Consensus 432 F 432 (450)
T COG1224 432 F 432 (450)
T ss_pred H
Confidence 4
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.59 E-value=9.6e-15 Score=150.19 Aligned_cols=209 Identities=20% Similarity=0.283 Sum_probs=153.8
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE--E---EEe
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--I---RVI 234 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~--i---~v~ 234 (426)
.++++.+|++++|++.+...|+.++.. -+-..+.||+||.|||||++||.+|+.++|.- . ...
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 467889999999999999999999976 23467899999999999999999999887642 0 001
Q ss_pred cc---hhhhh-h---------hcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 235 GS---ELVQK-Y---------VGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 235 ~~---~l~~~-~---------~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
|. ++... + ...+-..+|++.+.+. ...+-|++|||+|.| +... +..||.
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~a---fNALLK 141 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQA---FNALLK 141 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHH---HHHHhc
Confidence 11 11110 0 1113345666666654 345579999999998 3333 444555
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHhCCCCcHH
Q 014332 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-IRFELLARLCPNSTGA 376 (426)
Q Consensus 298 ~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~-v~l~~la~~t~g~sg~ 376 (426)
.++ .++..|++|++|..+..+++.+++ |+ ..+.|...+.++....|...+.+.++.-+ -.+..+++..+| +.+
T Consensus 142 TLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 142 TLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred ccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chh
Confidence 554 478899999999999999999999 88 57889999999999999999988777633 346778888877 778
Q ss_pred HHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 014332 377 DIRSVCTEAGMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 377 di~~l~~~A~~~A~~~~~~~It~ed~~~ 404 (426)
|..+++..|..++- ..||.+.+..
T Consensus 216 DalslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 216 DALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred hHHHHHHHHHHccC----CcccHHHHHH
Confidence 99999998876641 3444444443
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5e-14 Score=149.91 Aligned_cols=207 Identities=16% Similarity=0.238 Sum_probs=147.2
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+..++++.+|++|+|++.+++.|..++.. -..+..+|||||+|+|||++|+++|+.+.|.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 34678899999999999999999999875 1356679999999999999999999987542
Q ss_pred -----------------EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
++.+++.. ..+...++.+...+.. ....|++|||+|.+ +...
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a 137 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAA 137 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHH
Confidence 22222211 0113445666655532 23469999999999 4555
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCC-CccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~-~v~l~~la 367 (426)
+..|+..|++ +...+++|++|+.+..+-+.+++ |+ ..++|..++.++...+++..+...++.- .-.+..|+
T Consensus 138 ~naLLK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 138 FNAFLKTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666654 45567788888888889999998 87 5799999999999999988887766652 23467788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
..+.| +.+++.+++..+..++ +.. ||.+++.+.+
T Consensus 210 ~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 210 QKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 88855 5556666665554443 222 6666555443
No 138
>PRK06620 hypothetical protein; Validated
Probab=99.58 E-value=6.6e-14 Score=130.57 Aligned_cols=196 Identities=16% Similarity=0.260 Sum_probs=125.9
Q ss_pred cCCCCccccccCcH---HHHHHHHHHHhcCccChhHHHhhCCCC-CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 161 EKPDVTYNDVGGCK---EQIEKMREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 161 ~~~~~~~~di~G~~---~~~~~l~~~i~~~l~~~~~~~~~g~~~-~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
..+..+|++++.-+ .+...++++... .+..+ .+.++||||||||||||++++++..+..++. ..
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~ 76 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI 76 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh
Confidence 34556777743333 344555555432 12223 2679999999999999999999988764432 11
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.. ....+ ....+|+|||||.+ . +..+..+++.+. ..+..++|+++..
T Consensus 77 ~~-----------~~~~~-----~~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~~ 123 (214)
T PRK06620 77 FF-----------NEEIL-----EKYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSDK 123 (214)
T ss_pred hh-----------chhHH-----hcCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCCC
Confidence 10 01111 12359999999965 1 134556655553 3455666666655
Q ss_pred CCC--CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 317 PDT--LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 317 ~~~--ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
|.. + ++|++ |+. ..+.+..|+.+.+..+++.++...++. ++-..+.|+.++.+ +.+.+..++......+..
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~ 199 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI 199 (214)
T ss_pred ccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 543 5 78888 875 379999999999999999887754443 23346778888866 666777777775544444
Q ss_pred HcCCCccHHHHHHHH
Q 014332 392 ARRKTVTEKDFLDAV 406 (426)
Q Consensus 392 ~~~~~It~ed~~~A~ 406 (426)
.+ +.||...+.+++
T Consensus 200 ~~-~~it~~~~~~~l 213 (214)
T PRK06620 200 SK-RKITISLVKEVL 213 (214)
T ss_pred cC-CCCCHHHHHHHh
Confidence 33 569988887765
No 139
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.58 E-value=2.3e-14 Score=141.87 Aligned_cols=226 Identities=19% Similarity=0.224 Sum_probs=148.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-------CcEEEEe
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVI 234 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-------~~~i~v~ 234 (426)
.+...|++|+|+++.+..|.-.+..| ...++||+||+|||||++||+++..+. .+|....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 55678999999999999998887652 346899999999999999999988652 2332000
Q ss_pred ------cchhhhhh-------------------hcchHHH------HHHHHHHHH---------cCCCEEEEEeCCCccc
Q 014332 235 ------GSELVQKY-------------------VGEGARM------VRELFQMAR---------SKKACIVFFDEVDAIG 274 (426)
Q Consensus 235 ------~~~l~~~~-------------------~g~~~~~------v~~lf~~a~---------~~~p~Il~iDEiD~l~ 274 (426)
++.+.... .|.++.. +...|.... .....+||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 00000000 0111111 011111110 112359999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCCC-HHHH
Q 014332 275 GARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPD-LESR 344 (426)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~-~~er 344 (426)
++..|..|++.++.. +|. ....++++|+|.|..+ .+.++++. ||...+.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 788999999988652 122 1234677888778654 68999999 999999999997 5899
Q ss_pred HHHHHHHHhcCC--CC-----------------------CCcc--------HHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 345 TQIFKIHTRTMN--CE-----------------------RDIR--------FELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 345 ~~Il~~~l~~~~--~~-----------------------~~v~--------l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
.+|++....... .. ..+. +..++..+.--+++--..+++.|...|..
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 999987532110 00 0010 11223333223455555778888899999
Q ss_pred HcCCCccHHHHHHHHHHHHhhc
Q 014332 392 ARRKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 392 ~~~~~It~ed~~~A~~~v~~~~ 413 (426)
+++..|+.+|+..++.-|+..-
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998887543
No 140
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.57 E-value=5.1e-14 Score=142.38 Aligned_cols=221 Identities=21% Similarity=0.259 Sum_probs=140.8
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHH-Hh---hCC-CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhh
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKF-VK---LGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYV 243 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~-~~---~g~-~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~ 243 (426)
|+|++++++.+..++......-... .. -++ ....++||+||||||||++|+++|..++.+|..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 8999999999988874311110000 00 001 12468999999999999999999999999999999888753 477
Q ss_pred cch-HHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCCC---CCChHHHHHHHHHHHHhc--------CCCCCCC
Q 014332 244 GEG-ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGV---GGDNEVQRTMLEIVNQLD--------GFDARGN 307 (426)
Q Consensus 244 g~~-~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~l~--------~~~~~~~ 307 (426)
|.. ...+..++..+ ....++||||||+|.+..++...+. -+...+|+.|+++|+..- ...+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 34444444322 2345679999999999875432221 122468888888884210 0112235
Q ss_pred eEEEEEeCCC---------------------------C-----------------------CCCccccCCCCcceEEEec
Q 014332 308 IKVLMATNRP---------------------------D-----------------------TLDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 308 v~vI~atn~~---------------------------~-----------------------~ld~al~r~gRf~~~i~~~ 337 (426)
.++|+|+|-. + .+.|+|+. |++..+.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 6777777751 0 02345554 999999999
Q ss_pred CCCHHHHHHHHHHH----Hhc----C---CCC---CCccHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHH
Q 014332 338 LPDLESRTQIFKIH----TRT----M---NCE---RDIRFELLARL--CPNSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 338 ~P~~~er~~Il~~~----l~~----~---~~~---~~v~l~~la~~--t~g~sg~di~~l~~~A~~~A~~~ 392 (426)
+.+.++..+|+... +++ + ++. .+-.++.|++. ...+-.+-|+.+++...+-+.-+
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 99999999998753 221 1 111 11124556664 33455678888888777655443
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.56 E-value=1.7e-13 Score=127.95 Aligned_cols=169 Identities=22% Similarity=0.301 Sum_probs=122.6
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
+....++.+++|+|.+.+++.|.+....++. | .|..++||||++|||||+++|++.+++ |..+|.+..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 4456678999999999999999988865433 3 578899999999999999999999976 678888877
Q ss_pred chhhhhhhcchHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 236 SELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
.++.. +..+++..+. ...-|||+|++-.= .+....+.|..+|+-- --..+.||++.+|+
T Consensus 89 ~~L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe----------~~d~~yk~LKs~LeGg-le~~P~NvliyATS 148 (249)
T PF05673_consen 89 EDLGD---------LPELLDLLRDRPYKFILFCDDLSFE----------EGDTEYKALKSVLEGG-LEARPDNVLIYATS 148 (249)
T ss_pred HHhcc---------HHHHHHHHhcCCCCEEEEecCCCCC----------CCcHHHHHHHHHhcCc-cccCCCcEEEEEec
Confidence 66532 3445555443 34569999986421 1223334444444321 11456789999999
Q ss_pred CCCCCCCc-----------------------cccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 014332 315 NRPDTLDP-----------------------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE 358 (426)
Q Consensus 315 n~~~~ld~-----------------------al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~ 358 (426)
|+-..+.. +|- .||...+.|..|+.++-.+|++.++...++.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLs--DRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLS--DRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHH--HhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 98433222 222 4999999999999999999999999877765
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.56 E-value=5e-14 Score=139.48 Aligned_cols=218 Identities=20% Similarity=0.201 Sum_probs=142.5
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-------CCcEE-------
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFI------- 231 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-------~~~~i------- 231 (426)
.|..|+|+++++..|.-.+..| ...+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999998886665432 24679999999999999999999866 22221
Q ss_pred --EEecchh----------------hh--------hhhcch--HHHH--------HHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 232 --RVIGSEL----------------VQ--------KYVGEG--ARMV--------RELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 232 --~v~~~~l----------------~~--------~~~g~~--~~~v--------~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
..+|... .. ...|.. .+.+ ..++.. ....+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhC--
Confidence 0000000 00 111110 0000 001111 12359999999998
Q ss_pred CccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCCCH-HHHH
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRT 345 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P~~-~er~ 345 (426)
++..|..|+++++.- +|. ....++++|+++|..+ .+.++++. ||...+.++.|+. ++|.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 788999999988653 121 1234678888888654 68999999 9999999999975 8888
Q ss_pred HHHHHHHhcC----C----CC-----------------CCc--c------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 014332 346 QIFKIHTRTM----N----CE-----------------RDI--R------FELLARLCPNSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 346 ~Il~~~l~~~----~----~~-----------------~~v--~------l~~la~~t~g~sg~di~~l~~~A~~~A~~~ 392 (426)
+|++...... . +. .++ + +..++..+..-+.+--..+++.|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 9888743210 0 00 011 0 122333333334455667889999999999
Q ss_pred cCCCccHHHHHHHHHHHHhh
Q 014332 393 RRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 393 ~~~~It~ed~~~A~~~v~~~ 412 (426)
++..|+.+|+..++.-++..
T Consensus 293 GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999888644
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.9e-13 Score=136.97 Aligned_cols=195 Identities=21% Similarity=0.345 Sum_probs=142.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
+...++||||.|+|||||++|++++. ++.++++....+...++......-.+-|..-. .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45679999999999999999999976 45688888888887776665444444565555 445999999999976
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-CCCC---CCccccCCCCcce--EEEecCCCHHHHHHHHH
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN-RPDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFK 349 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn-~~~~---ld~al~r~gRf~~--~i~~~~P~~~er~~Il~ 349 (426)
....|..+..+++.+. ..++ .||.|+. .|.. +.|.|++ ||.. .+.+.+|+.+.|..||+
T Consensus 190 ---------k~~~qeefFh~FN~l~---~~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 190 ---------KERTQEEFFHTFNALL---ENGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ---------ChhHHHHHHHHHHHHH---hcCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHH
Confidence 3445777777777664 2333 4555554 4544 5588988 8865 78888999999999999
Q ss_pred HHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 014332 350 IHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 350 ~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~ 414 (426)
......++. ++.-...++..... +.+++..+++....+|...++ .||.+.+.++++.......
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcccc
Confidence 977766655 33345667777654 667888888888877766655 6888888887777665443
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=1.6e-13 Score=151.20 Aligned_cols=197 Identities=22% Similarity=0.309 Sum_probs=137.2
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCC---CCC-cceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID---PPK-GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~---~~~-~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~ 241 (426)
.|+|++.+++.+.+++... +.|+. .|. .+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 4999999999999999752 22332 233 48999999999999999999988 468899999887543
Q ss_pred -----hhcchHHHH-----HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC------C
Q 014332 242 -----YVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------R 305 (426)
Q Consensus 242 -----~~g~~~~~v-----~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~------~ 305 (426)
.+|.....+ ..+.+..+.++++||+||||+.+ ++.++..|+++++...-.+. -
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEec
Confidence 222221111 12445556688899999999987 78899999999886431111 2
Q ss_pred CCeEEEEEeCCC-----------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC-
Q 014332 306 GNIKVLMATNRP-----------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM- 355 (426)
Q Consensus 306 ~~v~vI~atn~~-----------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~- 355 (426)
.+++||+|||.. ..+.|+|++ |++ .|.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~ 784 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIA 784 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHH
Confidence 478999999851 125567777 997 89999999999999998876542
Q ss_pred -------CCCCCc---cHHHHHHhCCC--CcHHHHHHHHHHHHH
Q 014332 356 -------NCERDI---RFELLARLCPN--STGADIRSVCTEAGM 387 (426)
Q Consensus 356 -------~~~~~v---~l~~la~~t~g--~sg~di~~l~~~A~~ 387 (426)
++.-.+ ..+.|+..+.+ +-.+.++.+++.-..
T Consensus 785 ~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 785 RRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred HHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 221112 23456665432 345667766665443
No 145
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.54 E-value=1.9e-13 Score=151.36 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=141.3
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCC----CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
..|+|++.+++.+...+... ..|+. |...+||+||||||||++|+++|..+ +.++++++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 45999999999999999752 22332 34569999999999999999999976 56899999988744
Q ss_pred h-----hhcchHHH-----HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------C
Q 014332 241 K-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------A 304 (426)
Q Consensus 241 ~-----~~g~~~~~-----v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~ 304 (426)
. .+|..... -..+....+..+.+|||||||+.+ ++.++..|+++++...-.+ .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 3 22222111 123445556677789999999998 8999999999997642111 1
Q ss_pred CCCeEEEEEeCCCC-------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC----
Q 014332 305 RGNIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM---- 355 (426)
Q Consensus 305 ~~~v~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~---- 355 (426)
-.+++||+|||... .+.|.|+. |++.++.|.+++.+...+|+...+..+
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l 783 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRL 783 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHH
Confidence 24688999999721 13466776 999999999999999999998776421
Q ss_pred ---CCCCCcc---HHHHHHhC--CCCcHHHHHHHHHHHHHHH
Q 014332 356 ---NCERDIR---FELLARLC--PNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 356 ---~~~~~v~---l~~la~~t--~g~sg~di~~l~~~A~~~A 389 (426)
++.-.++ .+.|+... ..+..+.|+++++......
T Consensus 784 ~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 784 AERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 1111222 34455542 2455688888887766544
No 146
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=2.6e-13 Score=149.93 Aligned_cols=167 Identities=25% Similarity=0.365 Sum_probs=121.6
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCC----CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP----PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~----~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~ 239 (426)
...|+|++.+++.+...+.. ...|+.. ...+||+||||||||++|+++|+.+ +.++++++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRR--------SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHH--------HHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 44589999999999999975 2223322 2468999999999999999999976 4679999998875
Q ss_pred hh-----hhcchHHH-----HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------
Q 014332 240 QK-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ 303 (426)
Q Consensus 240 ~~-----~~g~~~~~-----v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------ 303 (426)
.. .+|..... -..+....+..+.+||||||++.+ ++.++..++++++...-.+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEE
Confidence 43 12221111 112333344556689999999998 7889999999997632111
Q ss_pred CCCCeEEEEEeCCC-------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 304 ARGNIKVLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 304 ~~~~v~vI~atn~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
...+.+||+|||.. ..+.|+|++ |++..+.|.+++.+....|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12356789999862 235577887 99999999999999999998877754
No 147
>PRK09087 hypothetical protein; Validated
Probab=99.52 E-value=6.1e-13 Score=125.10 Aligned_cols=173 Identities=21% Similarity=0.237 Sum_probs=115.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (426)
...++||||+|+|||||++++++..++.++ +...+... .+..... .+|+|||+|.+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~------ 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF------ 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcchH-----------HHHhhhc---CeEEEECCCCCCC------
Confidence 345999999999999999999998766543 33222211 1111112 3899999998721
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCC
Q 014332 282 VGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMN 356 (426)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~ 356 (426)
+ +..+..+++.+. ..+..+||+++..|. ...+.+++ |+. ..+++..|+.+.|..+++.++...+
T Consensus 102 ---~---~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 102 ---D---ETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred ---C---HHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 1 344666666654 234444554544443 34688988 875 6899999999999999999998765
Q ss_pred CC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 357 CE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 357 ~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+. ++-.++.|+++..+ +.+.+..++......+...+ +.||...+.++++.+
T Consensus 171 ~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 171 LYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 54 33346778887765 44566666666655555544 559999998888764
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.52 E-value=2.4e-13 Score=116.77 Aligned_cols=140 Identities=43% Similarity=0.667 Sum_probs=97.6
Q ss_pred CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcchHH
Q 014332 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR 248 (426)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~~~ 248 (426)
|.+.++..+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 556667777666643 356789999999999999999999998 8899999988765543322211
Q ss_pred H---HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCC--CCCc
Q 014332 249 M---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DARGNIKVLMATNRPD--TLDP 322 (426)
Q Consensus 249 ~---v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-~~~~~v~vI~atn~~~--~ld~ 322 (426)
. ....+.......+.+|+|||++.+ .......+.+++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 122233444566789999999987 334455566666554321 1246788999999876 6778
Q ss_pred cccCCCCcceEEEec
Q 014332 323 ALLRPGRLDRKVEFG 337 (426)
Q Consensus 323 al~r~gRf~~~i~~~ 337 (426)
.+.+ ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 8877 998777765
No 149
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=6.4e-14 Score=136.85 Aligned_cols=141 Identities=19% Similarity=0.244 Sum_probs=106.4
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh--hhcchHHHH----------HHHHHHHHcCCCEEEEE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGARMV----------RELFQMARSKKACIVFF 267 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~--~~g~~~~~v----------~~lf~~a~~~~p~Il~i 267 (426)
...+++||.||||||||++++.+|..++.+++++++...... .+|...-.+ ...+-.|. ..++++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999998776554 344321110 11233333 34578999
Q ss_pred eCCCcccCCccCCCCCCChHHHHHHHHHHHH-----hc----CCCCCCCeEEEEEeCCCC------------CCCccccC
Q 014332 268 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ-----LD----GFDARGNIKVLMATNRPD------------TLDPALLR 326 (426)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~-----l~----~~~~~~~v~vI~atn~~~------------~ld~al~r 326 (426)
||+|.. .++++..|..+|+. +. .+....++.||+|+|... .++.+++.
T Consensus 141 DEin~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999997 78888888888874 11 123445789999999854 46789998
Q ss_pred CCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 327 PGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 327 ~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
||-..+.+.+|+.++-.+|+......
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999876543
No 150
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=3e-13 Score=145.16 Aligned_cols=218 Identities=21% Similarity=0.264 Sum_probs=143.9
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-------------------
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------------------- 226 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l------------------- 226 (426)
.|.+|+|++.++..|.-+...+ ...+|||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999998887666541 22579999999999999999999887
Q ss_pred ----------------CCcEEEEecchhhhhhhcch--HHHHH--------HHHHHHHcCCCEEEEEeCCCcccCCccCC
Q 014332 227 ----------------DACFIRVIGSELVQKYVGEG--ARMVR--------ELFQMARSKKACIVFFDEVDAIGGARFDD 280 (426)
Q Consensus 227 ----------------~~~~i~v~~~~l~~~~~g~~--~~~v~--------~lf~~a~~~~p~Il~iDEiD~l~~~r~~~ 280 (426)
..+|+.+.++......+|.. .+.+. .++.. ....|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhC-------
Confidence 24566554443322222321 11010 01111 12249999999999
Q ss_pred CCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCC-CCCCccccCCCCcceEEEecCCC-HHHHHHHHHH
Q 014332 281 GVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLPD-LESRTQIFKI 350 (426)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-~~ld~al~r~gRf~~~i~~~~P~-~~er~~Il~~ 350 (426)
+...|..|+++++.-. +. ....++.+|+|+|.. ..+.++|+. ||+..+.++.|. .+++.++++.
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 7889999999887531 11 223568899998864 468889999 999999998874 5777777764
Q ss_pred HHhcCC-------------------------CCCCc-----cHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHHcCCCc
Q 014332 351 HTRTMN-------------------------CERDI-----RFELLARLC--PNS-TGADIRSVCTEAGMFAIRARRKTV 397 (426)
Q Consensus 351 ~l~~~~-------------------------~~~~v-----~l~~la~~t--~g~-sg~di~~l~~~A~~~A~~~~~~~I 397 (426)
...... ....+ .+..++..+ -|. +.+-...+++.|...|..+++..|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V 292 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRV 292 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcC
Confidence 322000 00011 112222222 133 344455678888889999999999
Q ss_pred cHHHHHHHHHHHHhh
Q 014332 398 TEKDFLDAVNKVIKG 412 (426)
Q Consensus 398 t~ed~~~A~~~v~~~ 412 (426)
+.+|+..|+.-++..
T Consensus 293 ~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 293 TAEDVREAAELVLPH 307 (633)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988743
No 151
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-13 Score=140.66 Aligned_cols=214 Identities=21% Similarity=0.341 Sum_probs=140.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
....+|++|+|.+.++.++.+.+.. ....+..|||.|.+||||.++|+++.+.+ +.||+.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4457899999999999999988865 45678899999999999999999999976 679999999766
Q ss_pred hhhh-------------hcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC-
Q 014332 239 VQKY-------------VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF- 302 (426)
Q Consensus 239 ~~~~-------------~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~- 302 (426)
-... .|....--.-+|+.|..+ .||+|||..+ +...|..|++.|++-. .+
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecC
Confidence 4321 111111112355555444 8999999998 7899999999998742 11
Q ss_pred ---CCCCCeEEEEEeCCC--CCCCccccCCCCcce--EEEecCCCHHHHHH----HHHHHH----hcCCCC-CCccHHHH
Q 014332 303 ---DARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHT----RTMNCE-RDIRFELL 366 (426)
Q Consensus 303 ---~~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~l----~~~~~~-~~v~l~~l 366 (426)
..+-+|.||+|||+. +.+...-+|...|.+ ++.+..|...+|.+ +...++ +.++-. ..+.-+.+
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 123369999999974 223222222222222 67777888888865 223333 333322 22443433
Q ss_pred HHh----CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 014332 367 ARL----CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 403 (426)
Q Consensus 367 a~~----t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 403 (426)
+.+ -+| +-++|.+++.+|..++ .....|+.+|+-
T Consensus 454 ~~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 454 ALLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 332 233 4479999999988643 233335555554
No 152
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.48 E-value=1.8e-12 Score=134.90 Aligned_cols=215 Identities=23% Similarity=0.284 Sum_probs=148.8
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHH----hh-------------------CCCCCCcceEecCCC
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV----KL-------------------GIDPPKGVLCYGPPG 212 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~----~~-------------------g~~~~~~vLL~GppG 212 (426)
.+|++++.+..|.|+.|-+..-+.+..|+.. ..+..|. ++ +-++.+-+||+||||
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 4899999999999999999999999998864 3455554 11 112235699999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHH--------cCCCEEEEEeCCCcccCCccCCCCCC
Q 014332 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR--------SKKACIVFFDEVDAIGGARFDDGVGG 284 (426)
Q Consensus 213 tGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~--------~~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (426)
.||||||+.+|+++|..++.+++|+=.+ ...++.....|. ...|..|+|||||--
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------- 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------- 399 (877)
T ss_pred CChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------
Confidence 9999999999999999999999987533 223333222221 267889999999964
Q ss_pred ChHHHHHHHHHHHH----hcCCCC---------C---CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHH
Q 014332 285 DNEVQRTMLEIVNQ----LDGFDA---------R---GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (426)
Q Consensus 285 ~~~~~~~l~~ll~~----l~~~~~---------~---~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il 348 (426)
.....++++.++.. ..|-.. + -.-.||+.||... -|+|+.---|...+.|+.|...-..+-|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHH
Confidence 56667777777762 111111 0 0134889999654 4555421146789999999888777777
Q ss_pred HHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcC
Q 014332 349 KIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR 394 (426)
Q Consensus 349 ~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~ 394 (426)
+..+...++. +|...|+.+|+- +..||++.++....+|....+
T Consensus 478 ~~IC~rE~mr--~d~~aL~~L~el-~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 478 NEICHRENMR--ADSKALNALCEL-TQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHHHhhhcCC--CCHHHHHHHHHH-hcchHHHHHHHHHHHHHhccc
Confidence 7777666554 344445544432 233999999998888866543
No 153
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.47 E-value=1.7e-12 Score=138.25 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=88.0
Q ss_pred EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CC------------CCCCCeEEEEEeCCC--CCCCccc
Q 014332 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF------------DARGNIKVLMATNRP--DTLDPAL 324 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~------------~~~~~v~vI~atn~~--~~ld~al 324 (426)
.+|||||++.+ +...|..|+++|+.-. +. .-+-++.||+++|.. ..++|.|
T Consensus 219 GtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 36677777766 5678888888886522 10 012368899999974 6799999
Q ss_pred cCCCCcc---eEEEecC--C-CHHHHHHHHHHHH---hcCCCCCCccHHHHHHhC------CC------CcHHHHHHHHH
Q 014332 325 LRPGRLD---RKVEFGL--P-DLESRTQIFKIHT---RTMNCERDIRFELLARLC------PN------STGADIRSVCT 383 (426)
Q Consensus 325 ~r~gRf~---~~i~~~~--P-~~~er~~Il~~~l---~~~~~~~~v~l~~la~~t------~g------~sg~di~~l~~ 383 (426)
++ ||+ ..+.|+. | +.+.|.++.+... +..+..+.++-+.+.+.. .| .+.++|.++|+
T Consensus 288 ~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 288 RS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 99 998 6666654 4 4556655544333 222222233333332221 11 24589999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 384 EAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 384 ~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+|...|..+++..|+.+|+.+|++..
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHH
Confidence 99888888888899999999998754
No 154
>PHA02244 ATPase-like protein
Probab=99.47 E-value=1.5e-12 Score=128.63 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=88.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhc--chHHHHH--HHHHHHHcCCCEEEEEeCCCcccC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG--EGARMVR--ELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g--~~~~~v~--~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
..+.+|||+||||||||++|+++|..++.+|+.++...-.....| .....+. .++... ..+++|||||++.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a-- 192 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDAS-- 192 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcC--
Confidence 346689999999999999999999999999999874210000111 0000111 222222 23459999999998
Q ss_pred CccCCCCCCChHHHHHHHHHHHHh-----cC-CCCCCCeEEEEEeCCC-----------CCCCccccCCCCcceEEEecC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQL-----DG-FDARGNIKVLMATNRP-----------DTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l-----~~-~~~~~~v~vI~atn~~-----------~~ld~al~r~gRf~~~i~~~~ 338 (426)
+++++..|..+++.. .+ +....++.+|+|+|.+ ..+++++++ || ..++|..
T Consensus 193 ---------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dy 260 (383)
T PHA02244 193 ---------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDY 260 (383)
T ss_pred ---------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCC
Confidence 677888888877531 11 1234678999999973 578899999 99 5799999
Q ss_pred CCHHHH
Q 014332 339 PDLESR 344 (426)
Q Consensus 339 P~~~er 344 (426)
|+..+.
T Consensus 261 p~~~E~ 266 (383)
T PHA02244 261 DEKIEH 266 (383)
T ss_pred CcHHHH
Confidence 984333
No 155
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=3.1e-12 Score=127.65 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=126.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-------EEEE-
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------FIRV- 233 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------~i~v- 233 (426)
..|..+++|+|++++++.|..++.. | ..|..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 5677899999999999999999975 2 456689999999999999999999987551 1000
Q ss_pred ---ecch-----------h--h-hhh-h--c-----chHHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCCCCC
Q 014332 234 ---IGSE-----------L--V-QKY-V--G-----EGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGG 284 (426)
Q Consensus 234 ---~~~~-----------l--~-~~~-~--g-----~~~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~ 284 (426)
.|.. + + ... . + -+...++.+.+.. ......|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 0100 0 0 000 0 0 0122334333322 2345569999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHH
Q 014332 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFE 364 (426)
Q Consensus 285 ~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~ 364 (426)
+...++.|+..+++ +..++++|..|+.+..+.|.+++ |+ ..+.|++|+.++...++........++ +-...
T Consensus 154 ~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~ 224 (351)
T PRK09112 154 NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITE 224 (351)
T ss_pred CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHH
Confidence 56667777766654 44567777778889999999998 88 699999999999999998743222211 12245
Q ss_pred HHHHhCCCCcHHHHHHHH
Q 014332 365 LLARLCPNSTGADIRSVC 382 (426)
Q Consensus 365 ~la~~t~g~sg~di~~l~ 382 (426)
.++..+.|- ++...+++
T Consensus 225 ~i~~~s~G~-pr~Al~ll 241 (351)
T PRK09112 225 ALLQRSKGS-VRKALLLL 241 (351)
T ss_pred HHHHHcCCC-HHHHHHHH
Confidence 677777664 43444444
No 156
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.46 E-value=4e-12 Score=129.77 Aligned_cols=213 Identities=17% Similarity=0.170 Sum_probs=133.2
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecch-hhhhhhcch
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE-LVQKYVGEG 246 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~-l~~~~~g~~ 246 (426)
|+|.+++++.+..++. ...++||+||||||||++|++++..++. +|..+.+.. .....+|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 7888888888777763 4678999999999999999999997643 444333321 111222211
Q ss_pred -HHHH--HHHHHHHHcC---CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CCCC-CCCeEEEEEeC
Q 014332 247 -ARMV--RELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFDA-RGNIKVLMATN 315 (426)
Q Consensus 247 -~~~v--~~lf~~a~~~---~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~~~-~~~v~vI~atn 315 (426)
-... ..-|.....+ ...+||+|||..+ ++..|..|++++++-. +-.. .+..++++|||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1122221111 2349999999987 7889999999997643 1111 11234555666
Q ss_pred CCC---CCCccccCCCCcceEEEecCCC-HHHHHHHHHHHHhc--CCC--CCCcc--------------------HH---
Q 014332 316 RPD---TLDPALLRPGRLDRKVEFGLPD-LESRTQIFKIHTRT--MNC--ERDIR--------------------FE--- 364 (426)
Q Consensus 316 ~~~---~ld~al~r~gRf~~~i~~~~P~-~~er~~Il~~~l~~--~~~--~~~v~--------------------l~--- 364 (426)
... ...+++.. ||-..+.+|+|+ .++..+++...... ... ..-+. .+
T Consensus 156 ~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~ 233 (498)
T PRK13531 156 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIF 233 (498)
T ss_pred CCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHH
Confidence 432 23348888 998899999997 46667777654221 101 00011 11
Q ss_pred HHHHh---C---CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 014332 365 LLARL---C---PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 365 ~la~~---t---~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~ 411 (426)
.|... + ...|++--.++++.|...|+.+++..|+.+|+. .+..++.
T Consensus 234 ~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 234 QLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 12221 2 236888888899999999999999999999999 6666543
No 157
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.46 E-value=5e-13 Score=135.83 Aligned_cols=209 Identities=22% Similarity=0.345 Sum_probs=139.4
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~ 241 (426)
..+.+++|.+..++++++.+.. -......|||+|++||||.++||+|...+ +.||+.+||..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k-----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK-----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4677899999999999999965 23567789999999999999999999976 569999999766432
Q ss_pred h-----hc--------chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC---
Q 014332 242 Y-----VG--------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD--- 303 (426)
Q Consensus 242 ~-----~g--------~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~--- 303 (426)
. .| ...+. .-.|+.|..+ .||||||..+ ..++|..|+++|++-. .+.
T Consensus 207 l~ESELFGhekGAFTGA~~~r-~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRR-IGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCccccc-CcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCc
Confidence 1 11 11111 1245555444 9999999998 7899999999998632 111
Q ss_pred -CCCCeEEEEEeCCC--CCCCccccCCC---CcceEEEecCCCHHHHHH----HHHHHHh----cCCCC-CCccHHHHHH
Q 014332 304 -ARGNIKVLMATNRP--DTLDPALLRPG---RLDRKVEFGLPDLESRTQ----IFKIHTR----TMNCE-RDIRFELLAR 368 (426)
Q Consensus 304 -~~~~v~vI~atn~~--~~ld~al~r~g---Rf~~~i~~~~P~~~er~~----Il~~~l~----~~~~~-~~v~l~~la~ 368 (426)
-+-+|.||+|||+. +.+....+|.. |+ .++.+..|...+|.+ +++++++ ..+.. ..++-+.++.
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 13369999999974 22222222222 44 377888899888876 4444443 33322 4456666665
Q ss_pred hCC-CCc--HHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 014332 369 LCP-NST--GADIRSVCTEAGMFAIRARRKTVTEKDFL 403 (426)
Q Consensus 369 ~t~-g~s--g~di~~l~~~A~~~A~~~~~~~It~ed~~ 403 (426)
++. .+. -+++++++.++...+ ....|+.+++-
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 543 333 367777777766554 55556665543
No 158
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.45 E-value=3.5e-12 Score=126.77 Aligned_cols=209 Identities=24% Similarity=0.249 Sum_probs=135.8
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh--hhcchH
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGA 247 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~--~~g~~~ 247 (426)
+.|.++++..+..++. ..+++||.||||||||++|+++|..++.+|+++.|...... ..|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 6777777777666654 36789999999999999999999999999999998754432 122211
Q ss_pred HHHH------------HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc------C-CCCCCCe
Q 014332 248 RMVR------------ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------G-FDARGNI 308 (426)
Q Consensus 248 ~~v~------------~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~-~~~~~~v 308 (426)
-... -+|.... +|+++|||+.. ++.++..|++.+++.. . +.-...+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 1100 0111111 49999999997 7899999999998732 2 3345678
Q ss_pred EEEEEeC-----CCCCCCccccCCCCcceEEEecCC-CHHHHHHHHHHHHhcC------CCCCCccH-------------
Q 014332 309 KVLMATN-----RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTM------NCERDIRF------------- 363 (426)
Q Consensus 309 ~vI~atn-----~~~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~l~~~------~~~~~v~l------------- 363 (426)
+||+|+| .-..+++++++ ||...+.+++| +..+...++....... ....-+..
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKV 233 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccC
Confidence 8888889 45678999999 99889999999 5554544444333211 00010111
Q ss_pred ----------HHHHHh-------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 364 ----------ELLARL-------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 364 ----------~~la~~-------t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
..+... ..|.+++...++...+...|...++..+..+|+......+.
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~ 297 (329)
T COG0714 234 PVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPAL 297 (329)
T ss_pred CchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhh
Confidence 011111 11224555566666666667777777778887766655543
No 159
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.44 E-value=2.8e-12 Score=133.27 Aligned_cols=213 Identities=20% Similarity=0.264 Sum_probs=135.4
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC----------------
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------------- 227 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---------------- 227 (426)
...|+++.|++.+++.+.-.+ ....+++|.||||||||+++++++..+.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 358899999999876655544 2456899999999999999999997431
Q ss_pred ------------CcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHH
Q 014332 228 ------------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (426)
Q Consensus 228 ------------~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (426)
.||....++......+|.+...-...+..| ...+|||||++.+ +...+..|.+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----------~~~~~~~L~~~ 318 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----------KRSVLDALREP 318 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----------CHHHHHHHHHH
Confidence 122211111111111121110001122333 2349999999998 77889999998
Q ss_pred HHHhc--------CCCCCCCeEEEEEeCCC-----C------------------CCCccccCCCCcceEEEecCCCHHH-
Q 014332 296 VNQLD--------GFDARGNIKVLMATNRP-----D------------------TLDPALLRPGRLDRKVEFGLPDLES- 343 (426)
Q Consensus 296 l~~l~--------~~~~~~~v~vI~atn~~-----~------------------~ld~al~r~gRf~~~i~~~~P~~~e- 343 (426)
|+.-. ......++.+|+++|.- . .+...|+. |||..+.++.++..+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 86532 01123578999999962 1 47788888 999999999765432
Q ss_pred ------------HHHHHHHH------HhcC---CCCCCccHHHH----------------HHhCCCCcHHHHHHHHHHHH
Q 014332 344 ------------RTQIFKIH------TRTM---NCERDIRFELL----------------ARLCPNSTGADIRSVCTEAG 386 (426)
Q Consensus 344 ------------r~~Il~~~------l~~~---~~~~~v~l~~l----------------a~~t~g~sg~di~~l~~~A~ 386 (426)
|..+.+.+ +... .++..+....+ +....++|.+....+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 22232211 1111 11111111111 11223678999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHH
Q 014332 387 MFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 387 ~~A~~~~~~~It~ed~~~A~~ 407 (426)
..|-.+++..|+.+|+.+|+.
T Consensus 477 TiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999985
No 160
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=5.1e-12 Score=126.81 Aligned_cols=180 Identities=19% Similarity=0.181 Sum_probs=124.8
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEE----------
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI---------- 231 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i---------- 231 (426)
..+.++++|+|++.+++.|..++.. -+.+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5678899999999999999999875 245678999999999999999999997632110
Q ss_pred -EE----ecc-----------hh--hhh-hhcc--------hHHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCC
Q 014332 232 -RV----IGS-----------EL--VQK-YVGE--------GARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDD 280 (426)
Q Consensus 232 -~v----~~~-----------~l--~~~-~~g~--------~~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~ 280 (426)
.+ .|. ++ +.. +.+. .-..+|++.+.+ ....+.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 00 000 00 000 0000 123345544443 2356779999999998
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC
Q 014332 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD 360 (426)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~ 360 (426)
+...++.|+..+++ +..++++|++|+.++.+.+.+++ |+ ..+.|+.|+.++..+++...... ..+
T Consensus 154 ----~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~ 218 (365)
T PRK07471 154 ----NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPD 218 (365)
T ss_pred ----CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCH
Confidence 67777777777764 45677888999999999999988 87 68999999999999988875421 111
Q ss_pred ccHHHHHHhCCCCcH
Q 014332 361 IRFELLARLCPNSTG 375 (426)
Q Consensus 361 v~l~~la~~t~g~sg 375 (426)
..+..++..+.|..+
T Consensus 219 ~~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 219 DPRAALAALAEGSVG 233 (365)
T ss_pred HHHHHHHHHcCCCHH
Confidence 122456777766433
No 161
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.42 E-value=9.1e-12 Score=119.89 Aligned_cols=193 Identities=18% Similarity=0.281 Sum_probs=123.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCC-cEEE--Eec-----chhhhh---hhcch------HHHHHHH----HHHHHcC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDA-CFIR--VIG-----SELVQK---YVGEG------ARMVREL----FQMARSK 260 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~-~~i~--v~~-----~~l~~~---~~g~~------~~~v~~l----f~~a~~~ 260 (426)
+..++|+||+|+|||++++.+++.+.. .+.. +.. .++... ..|.. ....+.+ .......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 345889999999999999999998752 2221 111 111111 11111 1112222 2233456
Q ss_pred CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC--CCCCC----ccccCCCCcceEE
Q 014332 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR--PDTLD----PALLRPGRLDRKV 334 (426)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~--~~~ld----~al~r~gRf~~~i 334 (426)
.+.+|+|||+|.+ +......+..+.+... .....+.|+++... .+.+. ..+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 7789999999998 3333344433332211 12233444444432 11111 23545 777889
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCC-----CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 335 EFGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 335 ~~~~P~~~er~~Il~~~l~~~~~~-----~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
.+++.+.++...++...+...+.. .+-.++.|++.+.|.. +.|..+|..|...|..++...|+.+++..++...
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999999888765432 2234677889998875 4799999999999999999999999999999875
Q ss_pred H
Q 014332 410 I 410 (426)
Q Consensus 410 ~ 410 (426)
.
T Consensus 267 ~ 267 (269)
T TIGR03015 267 D 267 (269)
T ss_pred h
Confidence 3
No 162
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.40 E-value=3.3e-12 Score=135.09 Aligned_cols=209 Identities=20% Similarity=0.299 Sum_probs=132.3
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~ 239 (426)
+..++++++|.+..++++.+.+... ......|||+|++||||+++|++++... +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4468899999999999999988752 2456789999999999999999999875 5799999998763
Q ss_pred hhhh-----cchHH-------HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-----
Q 014332 240 QKYV-----GEGAR-------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF----- 302 (426)
Q Consensus 240 ~~~~-----g~~~~-------~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~----- 302 (426)
.... |.... .....|..+ ...+||||||+.+ +...|..|+++++.-...
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCC
Confidence 3211 11000 000012222 2459999999999 788999999998753210
Q ss_pred -CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHH----HHHHHHHHhcC----CCCCCccHHHH
Q 014332 303 -DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESR----TQIFKIHTRTM----NCERDIRFELL 366 (426)
Q Consensus 303 -~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er----~~Il~~~l~~~----~~~~~v~l~~l 366 (426)
....++.+|++|+.. ..+.+.|.. |+. .+.+..|...+| ..+++.++... +....++-+.+
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 012358899998764 223334443 442 334444544444 34555555432 21122333333
Q ss_pred ---HHhC-CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 014332 367 ---ARLC-PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 403 (426)
Q Consensus 367 ---a~~t-~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 403 (426)
.... +| +-++++++++.|...+ ....|+.+|+.
T Consensus 403 ~~L~~~~WPG-NvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 403 RVLMSCKWPG-NVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 3322 22 4578888888877554 55679988875
No 163
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.40 E-value=1.3e-11 Score=116.34 Aligned_cols=129 Identities=24% Similarity=0.303 Sum_probs=95.9
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCCCccccCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRPG 328 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-------------~~~ld~al~r~g 328 (426)
|.||||||++.| +-++..-|...|+ ++-..+||+|||+ |.-+++.++.
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 678899998887 5555554444443 3445568889987 5667777877
Q ss_pred CcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 329 RLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 329 Rf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
|+ ..|..-+++.++.++|+++..+..++. .+-.+..++.....-|-+...+++.-|..+|...++..|..+|+.++-.
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 76 466777788899999999998876665 3344666777665666777778888899999999999999999988876
Q ss_pred HHH
Q 014332 408 KVI 410 (426)
Q Consensus 408 ~v~ 410 (426)
-+.
T Consensus 437 Lf~ 439 (456)
T KOG1942|consen 437 LFL 439 (456)
T ss_pred HHH
Confidence 544
No 164
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.40 E-value=4.2e-12 Score=116.30 Aligned_cols=186 Identities=17% Similarity=0.277 Sum_probs=124.0
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-C----CcEE
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D----ACFI 231 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-~----~~~i 231 (426)
.|++++++..+.||+|.++.++.|.-.... | .-.+++|.||||||||+-+.++|+++ | -.++
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 489999999999999999999999888765 2 34579999999999999999999986 3 2355
Q ss_pred EEecchhhhhhhcchHHHHHH---HHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 232 RVIGSELVQKYVGEGARMVRE---LFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~---lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
.+++|+=. +-..+|. .|..-+- +.-.||++||+|++ ....|..+.+.++..
T Consensus 83 ELNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy----- 140 (333)
T KOG0991|consen 83 ELNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY----- 140 (333)
T ss_pred hccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH-----
Confidence 66665432 2233332 3443332 22259999999998 455677777766653
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~ 383 (426)
.+...+..++|..+.+-..+.+ |+. .+.|...+..+...-+....+...+. .+--++.+....+| |+++.++
T Consensus 141 S~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 141 SNTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred cccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 2345688899988888777777 663 45566666665554444444333332 22335556555555 5555554
Q ss_pred H
Q 014332 384 E 384 (426)
Q Consensus 384 ~ 384 (426)
.
T Consensus 214 n 214 (333)
T KOG0991|consen 214 N 214 (333)
T ss_pred H
Confidence 4
No 165
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.39 E-value=9.5e-13 Score=137.70 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=133.9
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
..+|++|+|.+..++.+++.+.. -.....+|||+|++||||+++|+++.+.. +.||+.++|..+-.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~-----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRL-----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 36788999999999999998864 12456789999999999999999999764 67999999987643
Q ss_pred hh-----hcchH--------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--CC--
Q 014332 241 KY-----VGEGA--------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD-- 303 (426)
Q Consensus 241 ~~-----~g~~~--------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~-- 303 (426)
.. .|... .....+|+.|. ...||||||+.| +...|..|+.+|+.-.- +.
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCC
Confidence 21 11100 00112444443 348999999999 78999999999876321 11
Q ss_pred --CCCCeEEEEEeCCC--CCCCccccCCC---CcceEEEecCCCHHHHHH----HHHHHHhcCCCC--CCccHHHHHH--
Q 014332 304 --ARGNIKVLMATNRP--DTLDPALLRPG---RLDRKVEFGLPDLESRTQ----IFKIHTRTMNCE--RDIRFELLAR-- 368 (426)
Q Consensus 304 --~~~~v~vI~atn~~--~~ld~al~r~g---Rf~~~i~~~~P~~~er~~----Il~~~l~~~~~~--~~v~l~~la~-- 368 (426)
...++.+|++|+.. ..+....+++. |+. .+.+..|...+|.+ ++..++...... ..++.+.+..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 12357899999865 22222222211 332 35666666666654 555555443211 1122222211
Q ss_pred -----h-CCCC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 369 -----L-CPNS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 369 -----~-t~g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
+ ...+ +-++|++++.++...+.......|+.+++...
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 1 1233 44788888888876542222356888876543
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=9.8e-12 Score=131.92 Aligned_cols=209 Identities=15% Similarity=0.177 Sum_probs=127.5
Q ss_pred cccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE-E
Q 014332 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-V 233 (426)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~-v 233 (426)
...|.+++.|.++++|+|.++.++.++.++... .++..+.+.++|+||||||||++++.+|++++..++. .
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 347899999999999999999999999998652 1233445569999999999999999999988765433 1
Q ss_pred ecch-------------hhhhh--hcchHHHHHHHHHHHH----------cCCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 234 IGSE-------------LVQKY--VGEGARMVRELFQMAR----------SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 234 ~~~~-------------l~~~~--~g~~~~~v~~lf~~a~----------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
+... +...+ .......+..++..+. .....||||||++.+... ....
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~ 214 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRA 214 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHH
Confidence 1110 00000 0112233444444443 134569999999987531 1222
Q ss_pred HHHHHH-HHHHhcCCCCCCCeEEEEEeCC-CC--------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHH
Q 014332 289 QRTMLE-IVNQLDGFDARGNIKVLMATNR-PD--------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (426)
Q Consensus 289 ~~~l~~-ll~~l~~~~~~~~v~vI~atn~-~~--------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l 352 (426)
++.++. +.. ..+.+.+|++++. +. .|.+++++..|+ ..|.|.+.+.....+.|+..+
T Consensus 215 lq~lLr~~~~------e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 215 LHEILRWKYV------SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHhh------cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 333333 211 1334555555442 11 133677753455 489999999999877777766
Q ss_pred hcCCC--CCC------ccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 014332 353 RTMNC--ERD------IRFELLARLCPNSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 353 ~~~~~--~~~------v~l~~la~~t~g~sg~di~~l~~~A~~~A~ 390 (426)
..... ..+ -.+..|+... .+|++.+++.....+.
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFSSS 329 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHHHh
Confidence 54321 111 1344555543 3489888877666544
No 167
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=7.9e-12 Score=123.42 Aligned_cols=171 Identities=10% Similarity=0.168 Sum_probs=120.1
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------EEEEecch
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSE 237 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------~i~v~~~~ 237 (426)
+|++|+|++.+++.+...+.. -..+..+||+||+|+|||++|+++|+.+-+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 688999999999999999864 2456678999999999999999999976432 2222211
Q ss_pred hhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014332 238 LVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 313 (426)
-++. -+-..++++.+.+. .....|++||++|.+ +.+.++.|+..|++ ++.++++|.+
T Consensus 69 -~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 69 -NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred -cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 0010 12234565555432 344569999999998 56666766666653 5677888888
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCc
Q 014332 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNST 374 (426)
Q Consensus 314 tn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~s 374 (426)
|+.++.+.|.+++ |+ ..+.|+.|+.++...++...... .+ ......++..+.|..
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGIP 184 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCCH
Confidence 8889999999999 88 58999999999988877765432 21 122445666666533
No 168
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.39 E-value=8.5e-12 Score=123.82 Aligned_cols=201 Identities=18% Similarity=0.214 Sum_probs=124.0
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY---- 242 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~---- 242 (426)
|+|.+..++++.+.+... ......|||+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 467888888888877651 2456789999999999999999998765 4799999998653221
Q ss_pred -hcchH-------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--C----CCCCCe
Q 014332 243 -VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F----DARGNI 308 (426)
Q Consensus 243 -~g~~~-------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~----~~~~~v 308 (426)
.|... .....+|+.|. .++||||||+.| +...|..|+.+++.-.. . ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 11100 00011233332 359999999999 78999999999875321 0 113468
Q ss_pred EEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC--CCccHHHHHHhCC
Q 014332 309 KVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT----MNCE--RDIRFELLARLCP 371 (426)
Q Consensus 309 ~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~----~~~~--~~v~l~~la~~t~ 371 (426)
.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++.. .+.. ..++.+.+..+..
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 999999863 234455554 553 45666677766654 44444432 2222 2344444433321
Q ss_pred -CC--cHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 014332 372 -NS--TGADIRSVCTEAGMFAIRARRKTVTEKD 401 (426)
Q Consensus 372 -g~--sg~di~~l~~~A~~~A~~~~~~~It~ed 401 (426)
.+ +-+++++++++|...+ ....++.++
T Consensus 213 y~WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 213 YHWPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCCCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 22 4478888887776654 223455444
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.38 E-value=9.4e-12 Score=130.56 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=125.9
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCc-EEEE---ecchhhhhhhcc---hHHHHH-HHHHHHHcCCCEEEEEeCCCccc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDAC-FIRV---IGSELVQKYVGE---GARMVR-ELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~-~i~v---~~~~l~~~~~g~---~~~~v~-~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
.+|||+|+||||||++|+++++.+... |+.. ++..+....... +...++ ..+.. ....+++|||+|.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l- 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVL---ADNGVCCIDEFDKM- 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEe---cCCCEEEEechhhC-
Confidence 379999999999999999999977543 2221 111121100000 000000 01111 22349999999999
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCccccCCCCcceE
Q 014332 275 GARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDRK 333 (426)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~~ 333 (426)
+...|..|++.+++-. |. .-+.++.||+|+|... .|++++++ |||..
T Consensus 313 ----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 313 ----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred ----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 6788889998886521 11 1235788999999752 68999999 99986
Q ss_pred EEe-cCCCHHHHHHHHHHHHhcCC-----------------------------CCCCcc---HHHHH-----Hh------
Q 014332 334 VEF-GLPDLESRTQIFKIHTRTMN-----------------------------CERDIR---FELLA-----RL------ 369 (426)
Q Consensus 334 i~~-~~P~~~er~~Il~~~l~~~~-----------------------------~~~~v~---l~~la-----~~------ 369 (426)
+.+ ..|+.+...+|.+..+.... +.+.+. .+.+. .+
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~ 460 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQS 460 (509)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccc
Confidence 555 67899988888876543211 000111 01111 01
Q ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 014332 370 ----CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 370 ----t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~ 411 (426)
..+.|.+.+..+++-|...|..+.+..|+.+|+..|++-+..
T Consensus 461 ~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 461 EARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 124578999999999999999999999999999999987654
No 170
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.38 E-value=1.2e-11 Score=130.11 Aligned_cols=210 Identities=18% Similarity=0.267 Sum_probs=133.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
....+|++++|.+..++++.+.+... ......|||+|++||||+++|+++...+ +.+|+.++|+.+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 45679999999999988888877531 2345679999999999999999998765 479999999876
Q ss_pred hhhh-----hcchH-------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC--
Q 014332 239 VQKY-----VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF-- 302 (426)
Q Consensus 239 ~~~~-----~g~~~-------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~-- 302 (426)
-... .|... .....+|+.|. .+.||||||+.+ +...|..++++++.-. ..
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCC
Confidence 4321 11110 00012344433 348999999999 7899999999987631 11
Q ss_pred --CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHh----cCCCC-CCccHH
Q 014332 303 --DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTR----TMNCE-RDIRFE 364 (426)
Q Consensus 303 --~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~----~~~~~-~~v~l~ 364 (426)
....++.||+||+.+ ..+.+.|.. |+. .+.+..|...+|.+ +++.++. +.+.. ..+..+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 112467899998764 234444554 553 46677777777653 3333333 33322 234445
Q ss_pred HHHHhCC-CC--cHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 014332 365 LLARLCP-NS--TGADIRSVCTEAGMFAIRARRKTVTEKDF 402 (426)
Q Consensus 365 ~la~~t~-g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~ 402 (426)
.+..+.. .+ +-+++++++.+|...+ ....|+.+|+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 4544432 23 4467777777776543 4445666664
No 171
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.38 E-value=4.4e-12 Score=124.32 Aligned_cols=103 Identities=23% Similarity=0.287 Sum_probs=63.8
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCCccccCCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 329 (426)
|.||||||+|.| +-++..-|...++ +.-..+||+|||+ |.-++..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralE------s~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALE------SELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHT------STT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhc------CCCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 679999999999 7888777777765 2344568999996 5677788888 8
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHH
Q 014332 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 384 (426)
Q Consensus 330 f~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~ 384 (426)
+ ..|...+++.++..+|++.+++..++. .+-.++.|+......|-+..-+|+.-
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~ 394 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITP 394 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhh
Confidence 8 688899999999999999999887665 22234444444333344444444443
No 172
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.38 E-value=9.8e-12 Score=123.34 Aligned_cols=194 Identities=21% Similarity=0.209 Sum_probs=123.7
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh--
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK-- 241 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~-- 241 (426)
+++++|.+..++.+.+.+... ...+..|||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 567999999999999988752 2456789999999999999999998765 479999999876321
Q ss_pred ---hhcchH-------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCC
Q 014332 242 ---YVGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DAR 305 (426)
Q Consensus 242 ---~~g~~~-------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~ 305 (426)
..|... ......|..+ ....|||||+|.+ +...|..|+.+++.-... ...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 111100 0001123333 2348999999999 788999999988753210 112
Q ss_pred CCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCC--CCccHHHHHH
Q 014332 306 GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT----MNCE--RDIRFELLAR 368 (426)
Q Consensus 306 ~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~----~~~~--~~v~l~~la~ 368 (426)
.++.||++|+.. ..+.+.|.. ||. .+.+..|...+|.+ +++.++.. .+.. ..++-+.+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 358899998763 345566665 663 34555566666643 55555433 2221 2344444443
Q ss_pred hC-CCC--cHHHHHHHHHHHHHH
Q 014332 369 LC-PNS--TGADIRSVCTEAGMF 388 (426)
Q Consensus 369 ~t-~g~--sg~di~~l~~~A~~~ 388 (426)
+. ..+ +-++|+++++.|...
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 32 223 447888888887654
No 173
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.38 E-value=2.5e-12 Score=134.53 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=130.8
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHh-----------cCCcEEEE
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-----------TDACFIRV 233 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~-----------l~~~~i~v 233 (426)
.+|++|+|.+..++++++.+.. -.....+|||+|++||||+++|+++.+. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-----------~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-----------YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4688999999999999999864 1245678999999999999999999987 36799999
Q ss_pred ecchhhhhh-----hcchH--------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 014332 234 IGSELVQKY-----VGEGA--------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (426)
Q Consensus 234 ~~~~l~~~~-----~g~~~--------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (426)
+|..+.... .|... ..-..+|+.|. ...||||||+.| +...|..|+.+|+.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 998764321 11100 00112444443 348999999999 7899999999987632
Q ss_pred C--C----CCCCCeEEEEEeCCC--CCC-----CccccCCCCcceEEEecCCCHHHHHH----HHHHHHhc----CCCCC
Q 014332 301 G--F----DARGNIKVLMATNRP--DTL-----DPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRT----MNCER 359 (426)
Q Consensus 301 ~--~----~~~~~v~vI~atn~~--~~l-----d~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~----~~~~~ 359 (426)
- + ....++.+|++||.. ..+ .+.|.. |+ ..+.+..|...+|.+ +++.++++ .+..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~- 426 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAP- 426 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC-
Confidence 1 1 112367899999864 112 222222 33 145667777777654 45555544 2221
Q ss_pred CccHHHH-------HH-hCCCC--cHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 014332 360 DIRFELL-------AR-LCPNS--TGADIRSVCTEAGMFAIRARRKTVTEKDF 402 (426)
Q Consensus 360 ~v~l~~l-------a~-~t~g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~ 402 (426)
+.-+.+ .. ....+ +-++|++++.++...+.......|+.+++
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 221111 11 11222 45899999998887542222235665554
No 174
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.36 E-value=1.1e-11 Score=113.19 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=99.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhhhhhhcchHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQ 255 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~v~~lf~ 255 (426)
+.+..+|||||+|+|||++|+.+++.+.+. +..+.... . .-+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 456789999999999999999999987442 22221110 0 012244555555
Q ss_pred HHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcc
Q 014332 256 MARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 331 (426)
Q Consensus 256 ~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~ 331 (426)
.+.. ....|++|||+|.+ +...+..|+..++. ++..+.+|++|+.+..+.+++++ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-
Confidence 5443 44569999999999 45555655555543 34567788888888999999998 87
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCC
Q 014332 332 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (426)
Q Consensus 332 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g 372 (426)
..+.|++|+.++..++++.. +++ +..+..++..+.|
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 58999999999998888776 233 2345666666655
No 175
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.36 E-value=1.5e-11 Score=132.69 Aligned_cols=212 Identities=20% Similarity=0.309 Sum_probs=133.3
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
..+|++++|.+..++++.+.+... ......|||+|++||||+++|+++.+.+ +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457999999999999888887651 2456679999999999999999999875 47999999987632
Q ss_pred h-----hhcch----HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC--CC----C
Q 014332 241 K-----YVGEG----ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DA----R 305 (426)
Q Consensus 241 ~-----~~g~~----~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~~----~ 305 (426)
. ..|.. .......|+.| ..++||||||+.+ +...|..|+++++.-.-. .. +
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 1 11210 00000012222 3459999999999 789999999998653211 11 1
Q ss_pred CCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CCCCCccHHHHHHhC
Q 014332 306 GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCERDIRFELLARLC 370 (426)
Q Consensus 306 ~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~----~~~~~v~l~~la~~t 370 (426)
.++.+|+||+.. ..+.+.|.. |+ ..+.+..|...+|.+ +++.++..+ +....++.+.+..+.
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 267899999864 122333332 33 256677777777743 444444432 111123333333322
Q ss_pred C-CC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 371 P-NS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 371 ~-g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
. .+ +-++|+++++.|...+ ....|+.+|+-..+
T Consensus 533 ~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred cCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 1 22 4578888888876543 44568888876555
No 176
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=2.7e-12 Score=128.35 Aligned_cols=198 Identities=22% Similarity=0.296 Sum_probs=129.8
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhh
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV 239 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~ 239 (426)
...+.+++|.+...+++++.+.. -.+...+||++|++||||+++|+.++... +.|||.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34677899999999999999875 12446789999999999999999998643 6799999998875
Q ss_pred hhhhcc------------hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-----
Q 014332 240 QKYVGE------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF----- 302 (426)
Q Consensus 240 ~~~~g~------------~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~----- 302 (426)
...... ....-.-+|+.|..+ +||+|||+.+ ..+.|..++++++...-.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 542110 011112345555444 9999999999 789999999999874211
Q ss_pred -CCCCCeEEEEEeCCC--CCCCc--cccCCCCcceEEEecCCCHHHHHH----HH----HHHHhcCCCCCCccH-HH---
Q 014332 303 -DARGNIKVLMATNRP--DTLDP--ALLRPGRLDRKVEFGLPDLESRTQ----IF----KIHTRTMNCERDIRF-EL--- 365 (426)
Q Consensus 303 -~~~~~v~vI~atn~~--~~ld~--al~r~gRf~~~i~~~~P~~~er~~----Il----~~~l~~~~~~~~v~l-~~--- 365 (426)
....+|.+|+||+.. +.+-. .+.+ |. ..+.+.+|...+|.. ++ +.+.++.+.....+. +.
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 224579999999752 22222 3333 22 244555666666643 33 344445554422222 22
Q ss_pred -HHHhCCCCcHHHHHHHHHHHHHHHH
Q 014332 366 -LARLCPNSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 366 -la~~t~g~sg~di~~l~~~A~~~A~ 390 (426)
++...+| +-+++++++..++..+.
T Consensus 286 L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 2233455 44699999999987763
No 177
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.34 E-value=3.8e-11 Score=115.52 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=127.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhhh---h------hcc-------hHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQK---Y------VGE-------GARMVRELFQ 255 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~~---~------~g~-------~~~~v~~lf~ 255 (426)
...++||+|++|.|||++++.++..- .+|++.+.++.-.+. | .|. ..+.-..+..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 45679999999999999999999743 357777766432111 0 111 1222333445
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC----CCCCCccccCCCCcc
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR----PDTLDPALLRPGRLD 331 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~----~~~ld~al~r~gRf~ 331 (426)
..+...+.+|+|||++.++. |+..-|+.++.+|..+. +.-++.+|+.... .=.-|+.+.+ ||.
T Consensus 140 llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~ 206 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLG---NELQIPIVGVGTREAYRALRTDPQLAS--RFE 206 (302)
T ss_pred HHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHh---hccCCCeEEeccHHHHHHhccCHHHHh--ccC
Confidence 55667778999999999754 24455777777777663 2334444444322 2334677877 995
Q ss_pred eEEEecCC-CHHHHHHHHHHHHhcCCCCC--CccH----HHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 014332 332 RKVEFGLP-DLESRTQIFKIHTRTMNCER--DIRF----ELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 332 ~~i~~~~P-~~~er~~Il~~~l~~~~~~~--~v~l----~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 404 (426)
.+.+|.- ..++...++..+-..+++.. .+.. ..|-.++.|..| ++..+++.|+..|++.+...||.+.+..
T Consensus 207 -~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 207 -PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred -CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 5566653 23455667777777666542 2222 456678889887 9999999999999999999999998876
Q ss_pred H
Q 014332 405 A 405 (426)
Q Consensus 405 A 405 (426)
.
T Consensus 285 ~ 285 (302)
T PF05621_consen 285 I 285 (302)
T ss_pred C
Confidence 3
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=2.7e-11 Score=119.35 Aligned_cols=183 Identities=17% Similarity=0.238 Sum_probs=125.8
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc----------------
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------- 229 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---------------- 229 (426)
.|++|+|++.+++.+...+.. -+-+..+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 578999999999999999975 1446789999999999999999999976322
Q ss_pred --EEEEecchhh-hh--------hhc-------c-hHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCCh
Q 014332 230 --FIRVIGSELV-QK--------YVG-------E-GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDN 286 (426)
Q Consensus 230 --~i~v~~~~l~-~~--------~~g-------~-~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~ 286 (426)
++.+.+.... ++ ..| . .-..++++.+.+. .....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1212111000 00 000 0 1123555544443 244579999999999 66
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHH
Q 014332 287 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELL 366 (426)
Q Consensus 287 ~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~l 366 (426)
..++.|+..|++ ++ +.++|..|+.++.|-|.+++ |+ ..+.|+.|+.++..+++........ .+.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 677777777765 33 56788888999999999999 88 6899999999999998887643211 11234677
Q ss_pred HHhCCCCcHHHHHHHHH
Q 014332 367 ARLCPNSTGADIRSVCT 383 (426)
Q Consensus 367 a~~t~g~sg~di~~l~~ 383 (426)
+....|-.+ ...++++
T Consensus 208 ~~~a~Gs~~-~al~~l~ 223 (314)
T PRK07399 208 LALAQGSPG-AAIANIE 223 (314)
T ss_pred HHHcCCCHH-HHHHHHH
Confidence 787777444 4444443
No 179
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.33 E-value=3.2e-11 Score=128.31 Aligned_cols=197 Identities=19% Similarity=0.186 Sum_probs=130.2
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhhhhhhcchH--HHHH-H--HHHH--HHcCCCEEEEEeCCCcc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEGA--RMVR-E--LFQM--ARSKKACIVFFDEVDAI 273 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~~~~~g~~~--~~v~-~--lf~~--a~~~~p~Il~iDEiD~l 273 (426)
.+|||.|+||||||++|++++..+.. +|+.+..........|... ..+. . .|+. .......+||+|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998753 6888875333222333210 0000 0 0000 00112249999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC---CCCccccCCCCcceEEEecC-CCH
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD---TLDPALLRPGRLDRKVEFGL-PDL 341 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~---~ld~al~r~gRf~~~i~~~~-P~~ 341 (426)
++..|..|++++++-. |. ....++.||+|+|..+ .+.++|+. ||...+.+.. |+.
T Consensus 97 -----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 -----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred -----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 7899999999987532 22 1234688999888765 78899999 9998887775 577
Q ss_pred HHHHHHHHHHHhcCC----C---------------CCCc-----cHHHHHHhC--CCCc-HHHHHHHHHHHHHHHHHHcC
Q 014332 342 ESRTQIFKIHTRTMN----C---------------ERDI-----RFELLARLC--PNST-GADIRSVCTEAGMFAIRARR 394 (426)
Q Consensus 342 ~er~~Il~~~l~~~~----~---------------~~~v-----~l~~la~~t--~g~s-g~di~~l~~~A~~~A~~~~~ 394 (426)
++|.+|++..+.... . ...+ .+..++..+ -|.+ .+--..+++.|...|..+++
T Consensus 164 ~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr 243 (589)
T TIGR02031 164 DLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGR 243 (589)
T ss_pred HHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 889998887652110 0 0111 112222211 1332 34444677888889999999
Q ss_pred CCccHHHHHHHHHHHHhh
Q 014332 395 KTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 395 ~~It~ed~~~A~~~v~~~ 412 (426)
..|+.+|+..|+.-|+..
T Consensus 244 ~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 244 TEVTEEDLKLAVELVLLP 261 (589)
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999988743
No 180
>PRK04132 replication factor C small subunit; Provisional
Probab=99.33 E-value=5.1e-11 Score=129.62 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=124.8
Q ss_pred CCcceEec--CCCChHHHHHHHHHHhc-----CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcC------CCEEEEEe
Q 014332 202 PKGVLCYG--PPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFQMARSK------KACIVFFD 268 (426)
Q Consensus 202 ~~~vLL~G--ppGtGKT~laralA~~l-----~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~------~p~Il~iD 268 (426)
.-+-+..| |++.|||++|+++|+++ +.+++.+++++..+ -..++.+...+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34567779 99999999999999997 56799999987422 23455554443221 23699999
Q ss_pred CCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHH
Q 014332 269 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (426)
Q Consensus 269 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il 348 (426)
|+|.| +...|..|+.++++ +..++.+|++||.+..+.+++++ |+ ..+.|+.|+.++....+
T Consensus 638 EaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 638 EADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred CcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 99999 66778888888775 45788999999999999999999 88 68999999999999888
Q ss_pred HHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Q 014332 349 KIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLD 404 (426)
Q Consensus 349 ~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~ 404 (426)
+..+...++. ++..+..++..+.| +.+..-++++.+... ...||.+++..
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~ 749 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFL 749 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 8877655543 33457788888877 333444444443321 13456555443
No 181
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.5e-11 Score=119.78 Aligned_cols=149 Identities=23% Similarity=0.374 Sum_probs=106.5
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---------------------
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--------------------- 227 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~--------------------- 227 (426)
++.|.+.+...+..++... + +.|..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4677888888888877631 1 2344699999999999999999999876
Q ss_pred ---CcEEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 014332 228 ---ACFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (426)
Q Consensus 228 ---~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (426)
..++.++.++..... -....++.+-+.... ...-|++|||+|.+ +...+..++..+++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 356677766553321 123445554444332 34569999999999 56667777766664
Q ss_pred CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 014332 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (426)
Q Consensus 301 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 349 (426)
+..+..+|++||.+..+-+.+++ |+ ..+.|++|+...+....+
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 57789999999999999999999 88 578888766555544333
No 182
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.7e-11 Score=127.01 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=148.8
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
.....-.++-++|.++.++++.+.+.. +..++-+|.|+||+|||.++..+|.+. +..
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~ 228 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKR 228 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCE
Confidence 344556777799999999999999876 345677899999999999999999864 677
Q ss_pred EEEEecchhhh--hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 230 FIRVIGSELVQ--KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 230 ~i~v~~~~l~~--~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
++.++...++. +|.|+.+..++.+........+.||||||||.+.+.....+ + .-+..+.|...|. ++.
T Consensus 229 i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGe 299 (786)
T COG0542 229 IYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGE 299 (786)
T ss_pred EEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCC
Confidence 89999988875 68999999999999999988889999999999977543222 1 2333344444443 577
Q ss_pred eEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCc-----cHHHHHHhCC-----C
Q 014332 308 IKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-----RFELLARLCP-----N 372 (426)
Q Consensus 308 v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v-----~l~~la~~t~-----g 372 (426)
+.+|+||... =.-|+||-| || ..|.+..|+.++-..||+-.-..+.....| .+...+.++. .
T Consensus 300 L~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR 376 (786)
T COG0542 300 LRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDR 376 (786)
T ss_pred eEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccC
Confidence 8899998642 345899999 99 588999999999999998665544333222 2333333333 3
Q ss_pred CcHHHHHHHHHHHHHHH
Q 014332 373 STGADIRSVCTEAGMFA 389 (426)
Q Consensus 373 ~sg~di~~l~~~A~~~A 389 (426)
|-+.---.++.+|+...
T Consensus 377 ~LPDKAIDLiDeA~a~~ 393 (786)
T COG0542 377 FLPDKAIDLLDEAGARV 393 (786)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 33333345667766543
No 183
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.31 E-value=2.1e-12 Score=111.94 Aligned_cols=112 Identities=31% Similarity=0.435 Sum_probs=75.1
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh--hhcchHHH-------HHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGARM-------VRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~--~~g~~~~~-------v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
+|+|+||||||||++|+.+|+.++.+++.+.++..... ..|.-.-. -..+...+ ..+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 48999999999999999999999999999988764322 11110000 00000001 15679999999998
Q ss_pred CCccCCCCCCChHHHHHHHHHHHHhcCC--------CCCC------CeEEEEEeCCCC----CCCccccCCCCc
Q 014332 275 GARFDDGVGGDNEVQRTMLEIVNQLDGF--------DARG------NIKVLMATNRPD----TLDPALLRPGRL 330 (426)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l~~~--------~~~~------~v~vI~atn~~~----~ld~al~r~gRf 330 (426)
+++++..++.+++.-... .... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 688888888888653211 0111 489999999988 89999999 87
No 184
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.31 E-value=5.8e-12 Score=126.70 Aligned_cols=201 Identities=21% Similarity=0.320 Sum_probs=130.4
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
...+..|+|.+.++.++.+.|+. -.+....|||.|.+||||..+||+|...+ ..||+.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 55777899999999999999875 34567789999999999999999999876 67999999987644
Q ss_pred hh---------hcchHHHH---HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCCC--
Q 014332 241 KY---------VGEGARMV---RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA-- 304 (426)
Q Consensus 241 ~~---------~g~~~~~v---~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~~-- 304 (426)
.. -|.....+ +--|+.|.. +.||+|||..| ..++|..|+..|++-+ .+..
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCc
Confidence 32 11111111 123444433 38999999998 7899999999998743 2211
Q ss_pred --CCCeEEEEEeCCC--CCCCccccCCCCcce--EEEecCCCHHHHHH----HHHHHHh----cCCCC-CCccHHHHHHh
Q 014332 305 --RGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ----IFKIHTR----TMNCE-RDIRFELLARL 369 (426)
Q Consensus 305 --~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~----Il~~~l~----~~~~~-~~v~l~~la~~ 369 (426)
.-+|.||+|||+- ..+-..-+|...+.+ ++.+..|...+|.. +.+.++. ..+.. -.++.+.+...
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 2369999999973 111111112222222 55556688888754 2233333 33332 11222333222
Q ss_pred C-CCC--cHHHHHHHHHHHHHHH
Q 014332 370 C-PNS--TGADIRSVCTEAGMFA 389 (426)
Q Consensus 370 t-~g~--sg~di~~l~~~A~~~A 389 (426)
. .+| +-+++.+++.+|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 1 123 4589999999999887
No 185
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.30 E-value=1.9e-10 Score=106.07 Aligned_cols=168 Identities=20% Similarity=0.295 Sum_probs=121.1
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
..++++...+|+|.+.+++.|.+..+.++. | .|..+|||||..|||||+|+||+.++. +..++.|+..
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 345668889999999999999877654322 2 577899999999999999999999987 5678888877
Q ss_pred hhhhhhhcchHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEE
Q 014332 237 ELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVLMA 313 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~~~~~v~vI~a 313 (426)
++.. +-.+++..+. ...-|||+|++-.= .+......|..+| +|- ..+.||+|-+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~yK~LKs~L---eG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDAYKALKSAL---EGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchHHHHHHHHh---cCCcccCCCeEEEEEe
Confidence 7643 3344555444 23459999987431 1223334444444 332 34568999999
Q ss_pred eCCCCCCCc--------------------cccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 014332 314 TNRPDTLDP--------------------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE 358 (426)
Q Consensus 314 tn~~~~ld~--------------------al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~ 358 (426)
+|+-..++. -+--+.||...+.|++++.++-..|+..+.++.+++
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 998544431 111135999999999999999999999999988876
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.29 E-value=3.2e-11 Score=102.45 Aligned_cols=126 Identities=29% Similarity=0.436 Sum_probs=83.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCc---EEEEecchhhhh--------------hhcchHHHHHHHHHHHHcCCCEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQK--------------YVGEGARMVRELFQMARSKKACI 264 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~---~i~v~~~~l~~~--------------~~g~~~~~v~~lf~~a~~~~p~I 264 (426)
+..++|+||||||||++++.+|..+... ++.++++..... .........+.++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998765 788887754332 12234556778888888877889
Q ss_pred EEEeCCCcccCCccCCCCCCChHHHHHHHHH--HHHhcCCCCCCCeEEEEEeCC-CCCCCccccCCCCcceEEEecCC
Q 014332 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEI--VNQLDGFDARGNIKVLMATNR-PDTLDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--l~~l~~~~~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i~~~~P 339 (426)
|+|||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999995422 11111110 000011123456788999986 3444445555 88888777654
No 187
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.29 E-value=3.7e-11 Score=107.85 Aligned_cols=123 Identities=24% Similarity=0.417 Sum_probs=84.2
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY---- 242 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~---- 242 (426)
|+|.+..++++.+.+... ...+..|||+|++||||+++|+++.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 578888888888887652 2456889999999999999999999965 5799999998764331
Q ss_pred -hcchH-------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC----CCCCe
Q 014332 243 -VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----ARGNI 308 (426)
Q Consensus 243 -~g~~~-------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~----~~~~v 308 (426)
.|... ..-.-+|+.|... +||||||+.| +...|..|+++|+.-. ... ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 22110 0012455565544 9999999999 8999999999998632 111 13479
Q ss_pred EEEEEeCCC
Q 014332 309 KVLMATNRP 317 (426)
Q Consensus 309 ~vI~atn~~ 317 (426)
.||++|+.+
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999863
No 188
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.29 E-value=6.8e-11 Score=124.26 Aligned_cols=197 Identities=20% Similarity=0.286 Sum_probs=128.0
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~ 242 (426)
.+.+++|.+..++++.+.+.. -...+..|||+|++||||+++|+++.... +.+|+.++|..+-...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 677899999999999999875 23457789999999999999999999875 5799999998774321
Q ss_pred -----hcchH-------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--C----CC
Q 014332 243 -----VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F----DA 304 (426)
Q Consensus 243 -----~g~~~-------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~----~~ 304 (426)
.|... ......|+.|. ...|||||||.+ +...|..|+++++...- . ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 11100 00011243332 348999999999 78899999998875321 1 11
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CCC-CCccHHHHHH
Q 014332 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFELLAR 368 (426)
Q Consensus 305 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~----~~~-~~v~l~~la~ 368 (426)
..++.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++... +.. ..++.+.+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2368999999874 234444443 442 45666777777654 444444332 211 2244443333
Q ss_pred hC-CCC--cHHHHHHHHHHHHHHHH
Q 014332 369 LC-PNS--TGADIRSVCTEAGMFAI 390 (426)
Q Consensus 369 ~t-~g~--sg~di~~l~~~A~~~A~ 390 (426)
+. ..+ +-+++++++++|...+.
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 22 122 55899999999887663
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.29 E-value=3.6e-11 Score=121.92 Aligned_cols=144 Identities=23% Similarity=0.367 Sum_probs=92.3
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC--c-----EEEEec----
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--C-----FIRVIG---- 235 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~--~-----~i~v~~---- 235 (426)
++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+.. . ++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4567777777777766653 3678999999999999999999998743 1 222221
Q ss_pred chhhhhhhcc--h----HHHHHHHHHHHHc--CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH---------
Q 014332 236 SELVQKYVGE--G----ARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ--------- 298 (426)
Q Consensus 236 ~~l~~~~~g~--~----~~~v~~lf~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--------- 298 (426)
.+++..+... + ...+..++..|.. ..|++||||||+.... ..+...+.++++.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 2232222111 1 1123345566654 3578999999998632 2223333444431
Q ss_pred --------hcCCCCCCCeEEEEEeCCCC----CCCccccCCCCcceEEEecC
Q 014332 299 --------LDGFDARGNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 299 --------l~~~~~~~~v~vI~atn~~~----~ld~al~r~gRf~~~i~~~~ 338 (426)
.+.+..+.++.||+|+|..+ .+|.|++| ||. .|++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 12345567999999999886 89999999 995 556654
No 190
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.29 E-value=4.6e-12 Score=115.97 Aligned_cols=146 Identities=23% Similarity=0.311 Sum_probs=70.6
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC------------------
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD------------------ 227 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~------------------ 227 (426)
.|++|.|++.++..|.-+... +.++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 378999999999999888753 46899999999999999999998541
Q ss_pred ----------CcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 228 ----------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 228 ----------~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
.||.....+.-....+|.+....--. .+..+. .|||+||+-.+ +..+...|.+-++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGe--islAh~-GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGE--ISLAHR-GVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-C--GGGGTT-SEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCH--HHHhcC-CEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 01111111100001111110000000 112233 39999999998 7788888888887
Q ss_pred HhcC--------CCCCCCeEEEEEeCC-----------------------CCCCCccccCCCCcceEEEecCCCHH
Q 014332 298 QLDG--------FDARGNIKVLMATNR-----------------------PDTLDPALLRPGRLDRKVEFGLPDLE 342 (426)
Q Consensus 298 ~l~~--------~~~~~~v~vI~atn~-----------------------~~~ld~al~r~gRf~~~i~~~~P~~~ 342 (426)
.-.- +.-..++.+|+|+|. ...+...++. |||..+.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 6321 122447889999985 2345556666 77777777665543
No 191
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.28 E-value=8.1e-11 Score=122.02 Aligned_cols=213 Identities=18% Similarity=0.209 Sum_probs=132.6
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC----CcEEEE------e
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRV------I 234 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~----~~~i~v------~ 234 (426)
..|.++.|+..+++.+.-. +....+++|+||||+|||++++.++..+. ...+.+ .
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 3777888987766554322 24567899999999999999999997542 111111 1
Q ss_pred cc----------hhhhh--------hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHH
Q 014332 235 GS----------ELVQK--------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (426)
Q Consensus 235 ~~----------~l~~~--------~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (426)
+. .+.+. .+|.+...-...+..|.. .+||+||++.+ +...+..|.+.+
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHH
Confidence 10 01000 122211111123444433 39999999998 678888888888
Q ss_pred HHhc------C--CCCCCCeEEEEEeCCCC---------------------CCCccccCCCCcceEEEecCCCHHH----
Q 014332 297 NQLD------G--FDARGNIKVLMATNRPD---------------------TLDPALLRPGRLDRKVEFGLPDLES---- 343 (426)
Q Consensus 297 ~~l~------~--~~~~~~v~vI~atn~~~---------------------~ld~al~r~gRf~~~i~~~~P~~~e---- 343 (426)
+.-. + .....++.+|+|+|... .++.+++. |||..+.++.|+.++
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 6532 1 11245789999999742 47778888 999999999885321
Q ss_pred ------HHHHHHHH--------HhcCCCCCCccHHHH----------------HHhCCCCcHHHHHHHHHHHHHHHHHHc
Q 014332 344 ------RTQIFKIH--------TRTMNCERDIRFELL----------------ARLCPNSTGADIRSVCTEAGMFAIRAR 393 (426)
Q Consensus 344 ------r~~Il~~~--------l~~~~~~~~v~l~~l----------------a~~t~g~sg~di~~l~~~A~~~A~~~~ 393 (426)
...+-+.. .++-.+...+....+ +....|.|.+....+++-|...|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 11111100 000011111111111 113347889999999999999999999
Q ss_pred CCCccHHHHHHHHHH
Q 014332 394 RKTVTEKDFLDAVNK 408 (426)
Q Consensus 394 ~~~It~ed~~~A~~~ 408 (426)
+..|+.+|+.+|+.-
T Consensus 477 ~~~V~~~hv~eAl~y 491 (506)
T PRK09862 477 SDIITRQHLQEAVSY 491 (506)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999863
No 192
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.27 E-value=9.5e-11 Score=127.49 Aligned_cols=197 Identities=24% Similarity=0.374 Sum_probs=127.7
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
+.+|++++|.+..++.+.+.+... ......|||+|++|||||++|++++..+ +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 467889999999999998888651 2356689999999999999999999865 57999999987633
Q ss_pred h-----hhcc--------hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC---
Q 014332 241 K-----YVGE--------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF--- 302 (426)
Q Consensus 241 ~-----~~g~--------~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~--- 302 (426)
. ..|. .... ...|+.+. .++||||||+.+ +...|..++.+++... ..
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~-~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQR-IGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccch-hhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCC
Confidence 2 1121 1111 12344433 359999999999 7899999999987632 11
Q ss_pred -CCCCCeEEEEEeCCC--C-----CCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CCC-CCccHHH
Q 014332 303 -DARGNIKVLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFEL 365 (426)
Q Consensus 303 -~~~~~v~vI~atn~~--~-----~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~----~~~-~~v~l~~ 365 (426)
....++.+|++|+.. . .+.+.|.. |+. .+.+..|...+|.+ +++.++.++ +.. ..+..+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 112468899999864 1 22223332 332 56677777777755 445444332 222 1233333
Q ss_pred HHHhC-CCC--cHHHHHHHHHHHHHHH
Q 014332 366 LARLC-PNS--TGADIRSVCTEAGMFA 389 (426)
Q Consensus 366 la~~t-~g~--sg~di~~l~~~A~~~A 389 (426)
+..+. ..+ +-+++++++++|...+
T Consensus 583 l~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 583 LRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 33322 122 4578999988887643
No 193
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.26 E-value=1.5e-11 Score=110.67 Aligned_cols=115 Identities=25% Similarity=0.292 Sum_probs=72.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCC----cEEEEecchhhhhhhcchHHHHHHHHHHH----HcCCCEEEEEeCCCc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 272 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~----~~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~~~~p~Il~iDEiD~ 272 (426)
|-..+||.||+|||||.+|+++|..+.. +++.++++++... ++....+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456899999999999999999999986 9999999998771 11111122222111 111112999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCCCCeEEEEEeCCC
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARGNIKVLMATNRP 317 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~~~v~vI~atn~~ 317 (426)
+....+....-+...+++.|+++++...-. -+..++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 943211100001127888888888763211 224589999999964
No 194
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=1.1e-10 Score=115.61 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=104.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc------------------------EEEEecchhhhhhhcchHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQ 255 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~v~~lf~ 255 (426)
+.+.++||+||+|+|||++|+++|+.+.+. ++.+....- ++ .-+-..+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 456789999999999999999999987542 222211100 00 012345555555
Q ss_pred HHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcc
Q 014332 256 MAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 331 (426)
Q Consensus 256 ~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~ 331 (426)
.+. .....|++||++|.+ +...++.|+..|++ ++.++++|.+|+.++.|.|.+++ |+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc- 157 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC- 157 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-
Confidence 443 344569999999999 66777777777764 56789999999999999999999 98
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcH
Q 014332 332 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (426)
Q Consensus 332 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg 375 (426)
..+.|++|+.++..+.+...... ..+.....++..+.|-.+
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 46999999999888888765321 112223455666666433
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=5.5e-11 Score=118.14 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=108.3
Q ss_pred ccccccC-cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------------
Q 014332 166 TYNDVGG-CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------------- 229 (426)
Q Consensus 166 ~~~di~G-~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------------- 229 (426)
.|+.|.| ++.+++.|+..+.. -+.|..+||+||+|+||+++|+++|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4667777 99999999999864 2456778999999999999999999986432
Q ss_pred ---------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHH
Q 014332 230 ---------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (426)
Q Consensus 230 ---------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (426)
+..+... ++. -+-..++++.+.+. .....|++|||+|.+ +.+.++.|+..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 2222111 000 11234555554433 234469999999999 566677776666
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 014332 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (426)
Q Consensus 297 ~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 350 (426)
++ ++.++++|++|+.+..+.|.+++ |+ ..++|+.|+.++..++++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 64 56788889999999999999999 88 6899999999888777754
No 196
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4e-11 Score=115.21 Aligned_cols=85 Identities=28% Similarity=0.346 Sum_probs=62.9
Q ss_pred EEEEEeCCCcccCCccCCC-CCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEEe----CCCCCCCccccCCCCcce
Q 014332 263 CIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMAT----NRPDTLDPALLRPGRLDR 332 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l-----~~~~~~~~v~vI~at----n~~~~ld~al~r~gRf~~ 332 (426)
.|+||||||.++.+...++ .-+...+|+.++-+++-- .|......+.+|++. ..|.+|-|.|.- ||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 4999999999987664332 333456788887776431 122345578888876 468888899964 9999
Q ss_pred EEEecCCCHHHHHHHHH
Q 014332 333 KVEFGLPDLESRTQIFK 349 (426)
Q Consensus 333 ~i~~~~P~~~er~~Il~ 349 (426)
.+++...+.+....||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888774
No 197
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.23 E-value=3.7e-10 Score=107.04 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=98.5
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCCccccCCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~------------~~~ld~al~r~gR 329 (426)
|.||||||++.| +-++...+...++. .-..++|++||+ |.-++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 678888888887 66777777666652 223457888886 5677777777 7
Q ss_pred cceEEEecCCCHHHHHHHHHHHHhcCCCCC-CccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 330 f~~~i~~~~P~~~er~~Il~~~l~~~~~~~-~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
+ ..|...+++.++...||++.+....+.- +-.+..|......-+-+.--+|+..|.+.|.++....+..+|+.++++-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 6 5778888999999999999987765542 2234555565555566777789999999999999999999999999886
Q ss_pred HHhh
Q 014332 409 VIKG 412 (426)
Q Consensus 409 v~~~ 412 (426)
++..
T Consensus 429 FlD~ 432 (454)
T KOG2680|consen 429 FLDE 432 (454)
T ss_pred Hhhh
Confidence 6543
No 198
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.23 E-value=9.6e-11 Score=124.73 Aligned_cols=133 Identities=18% Similarity=0.252 Sum_probs=87.9
Q ss_pred EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CC------------CCCCCeEEEEEeCCC--CCCCccc
Q 014332 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF------------DARGNIKVLMATNRP--DTLDPAL 324 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~------------~~~~~v~vI~atn~~--~~ld~al 324 (426)
.+|||||++.| ++..|..|+++|+.-. +. .-+-++.||+++|+. ..++|+|
T Consensus 228 GtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 228 GVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred cEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 47788888887 6778888888886432 10 011267899999885 6678999
Q ss_pred cCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcCCC---CCCccHHHHHH-------hCCC-----CcHHHHHHHHH
Q 014332 325 LRPGRLD---RKVEFGL--P-DLESRTQIFKIHTRTMNC---ERDIRFELLAR-------LCPN-----STGADIRSVCT 383 (426)
Q Consensus 325 ~r~gRf~---~~i~~~~--P-~~~er~~Il~~~l~~~~~---~~~v~l~~la~-------~t~g-----~sg~di~~l~~ 383 (426)
+. ||. ..+.|.. + +.+.+..+++...+.... ...++-+.++. .+.. +.-++|..+++
T Consensus 297 ~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r 374 (637)
T PRK13765 297 RS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVR 374 (637)
T ss_pred HH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHH
Confidence 88 875 4555553 2 356666666644433321 22344333322 2211 23579999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 384 EAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 384 ~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
+|...|...++..++.+|+.+|+..
T Consensus 375 ~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 375 VAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHhhccceecHHHHHHHHHh
Confidence 9999999999999999999888753
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.17 E-value=7.6e-10 Score=115.33 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=133.6
Q ss_pred CcceEecCCCChHHHHHHHHHHhc----------CCcEEEEecchhhhh----------hhcch------HHHHHHHHHH
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELVQK----------YVGEG------ARMVRELFQM 256 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l----------~~~~i~v~~~~l~~~----------~~g~~------~~~v~~lf~~ 256 (426)
..++++|-||||||.+++.+-+.+ ...++.+++-.|.+. +.|+. -..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 469999999999999999999855 356888888666442 12221 1112222221
Q ss_pred H-HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----ccccCCCCcc
Q 014332 257 A-RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD----PALLRPGRLD 331 (426)
Q Consensus 257 a-~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld----~al~r~gRf~ 331 (426)
. ....++||+|||+|.|.... |..|..+++... ....+++||+.+|..+... ..+-+ |++
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg 567 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLG 567 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hcc
Confidence 1 23557899999999997643 677888877643 3456788888888765332 23333 665
Q ss_pred -eEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcH--HHHHHHHHHHHHHHHHHcC-------CCccHHH
Q 014332 332 -RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG--ADIRSVCTEAGMFAIRARR-------KTVTEKD 401 (426)
Q Consensus 332 -~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg--~di~~l~~~A~~~A~~~~~-------~~It~ed 401 (426)
..+.|.+++..+..+|+...+.....-..-..+.+|+.....|| +....+|++|...|-.+.. ..|+.-|
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 568 LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILH 647 (767)
T ss_pred ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHH
Confidence 48999999999999999999987633322234555665555555 3445689999988877665 5689999
Q ss_pred HHHHHHHHHh
Q 014332 402 FLDAVNKVIK 411 (426)
Q Consensus 402 ~~~A~~~v~~ 411 (426)
+.+|++.+..
T Consensus 648 v~~Ai~em~~ 657 (767)
T KOG1514|consen 648 VMEAINEMLA 657 (767)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.15 E-value=7e-10 Score=109.78 Aligned_cols=167 Identities=18% Similarity=0.170 Sum_probs=110.2
Q ss_pred ccc-cccCcHHHHHHHHHHHhcCccChhHHHhhCCC-CCCcceEecCCCChHHHHHHHHHHhcCC-------cEEEEec-
Q 014332 166 TYN-DVGGCKEQIEKMREVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKTLLARAVANRTDA-------CFIRVIG- 235 (426)
Q Consensus 166 ~~~-di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~laralA~~l~~-------~~i~v~~- 235 (426)
-|+ ++.|+++++.++.+++.... .|.. ..+.++|+||||||||++|+++|+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 345 79999999999998886522 2333 3567899999999999999999999866 7887776
Q ss_pred ---chhhhhhhcchHHHHHHHHHHH-------------------------------------------------------
Q 014332 236 ---SELVQKYVGEGARMVRELFQMA------------------------------------------------------- 257 (426)
Q Consensus 236 ---~~l~~~~~g~~~~~v~~lf~~a------------------------------------------------------- 257 (426)
+.+....++-....+|..|...
T Consensus 120 ~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 120 GEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence 4443332222222222211110
Q ss_pred -------------------Hc--------------CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC---
Q 014332 258 -------------------RS--------------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--- 301 (426)
Q Consensus 258 -------------------~~--------------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--- 301 (426)
.. ...+|+-|+|+.+. +.+.+..|+..+++..-
T Consensus 200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~ 268 (361)
T smart00763 200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGT 268 (361)
T ss_pred cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecC
Confidence 00 01136777777776 67777778777776321
Q ss_pred -C--CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCC-CHHHHHHHHHHHHhc
Q 014332 302 -F--DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRT 354 (426)
Q Consensus 302 -~--~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P-~~~er~~Il~~~l~~ 354 (426)
. .-.-..+||++||.. .....+|++ |+. .+.+|.| +..+-.+|.+..+..
T Consensus 269 ~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 269 GGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred CcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1 112246788999876 355789998 996 8899987 567777788877754
No 201
>PRK08116 hypothetical protein; Validated
Probab=99.15 E-value=5.5e-10 Score=107.77 Aligned_cols=124 Identities=22% Similarity=0.285 Sum_probs=81.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc----hHHHHHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE----GARMVRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~----~~~~v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
.+.+++|+|+||||||+||.++|+++ +.+++.++.++++..+... .......+++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 35679999999999999999999976 7888999988877654321 1111223333332 3349999999653
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CC----CCccccCCCCc---ceEEEecCCCH
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DT----LDPALLRPGRL---DRKVEFGLPDL 341 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-~~----ld~al~r~gRf---~~~i~~~~P~~ 341 (426)
. .....+..+.++++... ..+..+|+|||.+ .. ++..+.+ |+ ...+.+.-|+.
T Consensus 191 ~---------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 R---------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 14566777888887642 2334588888865 22 4566666 64 34566666664
No 202
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.14 E-value=8.5e-10 Score=109.75 Aligned_cols=217 Identities=26% Similarity=0.364 Sum_probs=139.4
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-------CcEEEE---
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRV--- 233 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-------~~~i~v--- 233 (426)
...|.-++|++..+..|--.... +.-.|+||.|+.|||||+++|++|.-+. ++|-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 35667799999988877555333 2346899999999999999999999762 222100
Q ss_pred ---ecch-------------------hhhhhhcchHH-HHHH------------HHH---HHHcCCCEEEEEeCCCcccC
Q 014332 234 ---IGSE-------------------LVQKYVGEGAR-MVRE------------LFQ---MARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 234 ---~~~~-------------------l~~~~~g~~~~-~v~~------------lf~---~a~~~~p~Il~iDEiD~l~~ 275 (426)
.|.. ++..-.|.++. .+.. .|+ .|+.+. .|+++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEeccccc--
Confidence 0111 11111233333 1111 111 122233 49999999999
Q ss_pred CccCCCCCCChHHHHHHHHHHHHh------cC--CCCCCCeEEEEEeCCC-CCCCccccCCCCcceEEEecCC-CHHHHH
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQL------DG--FDARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLP-DLESRT 345 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l------~~--~~~~~~v~vI~atn~~-~~ld~al~r~gRf~~~i~~~~P-~~~er~ 345 (426)
+..++..|+..+... +| +...-++++|+|+|.- ..|-|.|+. ||...+.+..| +.++|.
T Consensus 157 ---------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv 225 (423)
T COG1239 157 ---------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERV 225 (423)
T ss_pred ---------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHH
Confidence 788999999998873 23 3456689999999975 678888988 99999999887 678999
Q ss_pred HHHHHHHhcCCCCCCccHH-------------------------------HHHHhC-----CCCcHHHHHHHHHHHHHHH
Q 014332 346 QIFKIHTRTMNCERDIRFE-------------------------------LLARLC-----PNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 346 ~Il~~~l~~~~~~~~v~l~-------------------------------~la~~t-----~g~sg~di~~l~~~A~~~A 389 (426)
+|.+..+.- ...++..++ .++..+ .| ..+++. +.+.|...|
T Consensus 226 ~Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi~-~~r~a~a~a 302 (423)
T COG1239 226 EIIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADIV-VVRAAKALA 302 (423)
T ss_pred HHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-CchhhH-HHHHHHHHH
Confidence 888766542 111111111 111111 12 123332 345566677
Q ss_pred HHHcCCCccHHHHHHHHHHHH
Q 014332 390 IRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 390 ~~~~~~~It~ed~~~A~~~v~ 410 (426)
..+++..++.+|+.+|..-..
T Consensus 303 a~~Gr~~v~~~Di~~a~~l~l 323 (423)
T COG1239 303 ALRGRTEVEEEDIREAAELAL 323 (423)
T ss_pred HhcCceeeehhhHHHHHhhhh
Confidence 788899999999999988664
No 203
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.13 E-value=4.6e-10 Score=100.20 Aligned_cols=134 Identities=25% Similarity=0.385 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC-----------------------
Q 014332 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA----------------------- 228 (426)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~----------------------- 228 (426)
|++.+++.|...+.. -+.|..+||+||+|+||+++|+++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788899999999875 245778999999999999999999997522
Q ss_pred cEEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 229 CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 229 ~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
.++.+....... .-....++.+...+. .....|++||++|.+ +.+.+..|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 133333221100 012344555555443 234579999999999 78888888888885 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCC
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 339 (426)
..++.+|++|+.++.+-|.+++ |+ ..+.|+..
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 6899999999999999999999 88 56666643
No 204
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.8e-10 Score=119.49 Aligned_cols=129 Identities=26% Similarity=0.416 Sum_probs=101.4
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCC---CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh--
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-- 240 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-- 240 (426)
.|+|+++++..+-++|... +.|. ++...+||.||.|+|||-||+++|..+ .-.||+++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 4999999999999999873 2233 356679999999999999999999976 56799999997544
Q ss_pred hhhcch-----HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC------CCeE
Q 014332 241 KYVGEG-----ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR------GNIK 309 (426)
Q Consensus 241 ~~~g~~-----~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~------~~v~ 309 (426)
+..|.. ......+.+..+..+.+||+|||||.. +..++..|+++++...-.++. .|++
T Consensus 635 kligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred hccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 222221 223447788888899999999999997 899999999999876544433 4799
Q ss_pred EEEEeCC
Q 014332 310 VLMATNR 316 (426)
Q Consensus 310 vI~atn~ 316 (426)
||+|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 9999875
No 205
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=2.9e-09 Score=100.11 Aligned_cols=184 Identities=14% Similarity=0.224 Sum_probs=133.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-C--CcEEEE
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D--ACFIRV 233 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-~--~~~i~v 233 (426)
.|++++.+.+++.+.+.++....|+..... ..-.++++|||+|+||-|.+.++.+++ | .+=+++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 578889999999999999999988887642 123579999999999999999999976 2 221111
Q ss_pred ecch-------------hhhhh--------hcchHH-HHHHHHHHHHc---------CCCEEEEEeCCCcccCCccCCCC
Q 014332 234 IGSE-------------LVQKY--------VGEGAR-MVRELFQMARS---------KKACIVFFDEVDAIGGARFDDGV 282 (426)
Q Consensus 234 ~~~~-------------l~~~~--------~g~~~~-~v~~lf~~a~~---------~~p~Il~iDEiD~l~~~r~~~~~ 282 (426)
.... +.+.| .|-..+ .+.++.....+ ....+++|.|+|.+
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L--------- 139 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL--------- 139 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh---------
Confidence 1111 11111 222222 23444444322 22359999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCc
Q 014332 283 GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDI 361 (426)
Q Consensus 283 ~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v 361 (426)
..+.|..|.+-++.. .+++.+|..+|....+-+++++ |+ ..+.+|.|+.++...++...+.+.++. +.-
T Consensus 140 --T~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 140 --TRDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred --hHHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 678888888887754 4678999999999999999999 87 688999999999999999999887776 333
Q ss_pred cHHHHHHhCCC
Q 014332 362 RFELLARLCPN 372 (426)
Q Consensus 362 ~l~~la~~t~g 372 (426)
-+..++..+.|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 34566666655
No 206
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.12 E-value=2.1e-09 Score=112.23 Aligned_cols=212 Identities=13% Similarity=0.205 Sum_probs=129.0
Q ss_pred ccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
....|++++.|.+.+||....+-+++++.+++..+ .+..+.+-+||+||||||||++++.+|++++..+..-
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 34579999999999999999999999999997522 1334456788999999999999999999998877764
Q ss_pred ecchhh-------hhhhcch---H---H---HHHHH-HHHHHc-----------CCCEEEEEeCCCcccCCccCCCCCCC
Q 014332 234 IGSELV-------QKYVGEG---A---R---MVREL-FQMARS-----------KKACIVFFDEVDAIGGARFDDGVGGD 285 (426)
Q Consensus 234 ~~~~l~-------~~~~g~~---~---~---~v~~l-f~~a~~-----------~~p~Il~iDEiD~l~~~r~~~~~~~~ 285 (426)
..+... ..+.+.. . . ....+ +..++. ....||+|+|+-.++... .
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~ 149 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------T 149 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------H
Confidence 322110 1111110 0 0 11111 111111 245799999998775421 2
Q ss_pred hHHHHHHHHHHHHhcCCCCCC-CeEEEEEe-C------CC--------CCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 014332 286 NEVQRTMLEIVNQLDGFDARG-NIKVLMAT-N------RP--------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (426)
Q Consensus 286 ~~~~~~l~~ll~~l~~~~~~~-~v~vI~at-n------~~--------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 349 (426)
..+...|.+++.. ... .+++|++- . .. ..+++.++...++ ..|.|-+-...-..+.|+
T Consensus 150 ~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~ 223 (519)
T PF03215_consen 150 SRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALK 223 (519)
T ss_pred HHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHH
Confidence 3444445555542 122 66666661 1 11 1456666654444 578888866665555555
Q ss_pred HHHhcC--------CCCCCcc-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 014332 350 IHTRTM--------NCERDIR-FELLARLCPNSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 350 ~~l~~~--------~~~~~v~-l~~la~~t~g~sg~di~~l~~~A~~~A~ 390 (426)
..+... ....... ++.|+..+.| ||+.++....+.|.
T Consensus 224 rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 224 RILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 444332 1111122 5566665433 99999998888776
No 207
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.12 E-value=3.9e-10 Score=107.96 Aligned_cols=168 Identities=21% Similarity=0.233 Sum_probs=119.6
Q ss_pred CcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE-
Q 014332 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF- 230 (426)
Q Consensus 152 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~- 230 (426)
+.....|++.+++....++++.++....+.+.... ..-.+.|+|||||||||....+.|..+-++.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~ 91 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHP 91 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCC
Confidence 44456789999999999999999999999988643 2223999999999999999999999886641
Q ss_pred -----EEEecchhhhhhhcc-hHHHHHHHHHHHHc-------CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 231 -----IRVIGSELVQKYVGE-GARMVRELFQMARS-------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 231 -----i~v~~~~l~~~~~g~-~~~~v~~lf~~a~~-------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
..++.++ -.|- ..+.--..|..++. ..+..+++||.|++ ....|.+|.+.+.
T Consensus 92 ~~~m~lelnaSd----~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRvie 156 (360)
T KOG0990|consen 92 TTSMLLELNASD----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIE 156 (360)
T ss_pred chhHHHHhhccC----ccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHH
Confidence 1111111 0111 12222345665553 25679999999999 5677888877555
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 014332 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM 355 (426)
Q Consensus 298 ~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~ 355 (426)
.. +.++.++..+|.+..+.|++++ ||. .+.|.+.+.......+.++...-
T Consensus 157 k~-----t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 157 KY-----TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred Hh-----ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 43 4577788889999999999998 885 55666666666666666666543
No 208
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.12 E-value=3.9e-10 Score=116.60 Aligned_cols=203 Identities=19% Similarity=0.305 Sum_probs=127.6
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~ 242 (426)
.+.+++|.+..++.+.+.+.. -.....+++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~-----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK-----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 445688888888888877753 12345679999999999999999999865 5789999998763321
Q ss_pred hcchHHHHHHHHHH---------------HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--C---
Q 014332 243 VGEGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--F--- 302 (426)
Q Consensus 243 ~g~~~~~v~~lf~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~--- 302 (426)
+ -..+|.. ......++|||||++.+ +...|..++++++.-.- .
T Consensus 206 ~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 206 L------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred H------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCC
Confidence 1 1112221 01123459999999999 78899999999876320 0
Q ss_pred -CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CCC-CCccHHH
Q 014332 303 -DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFEL 365 (426)
Q Consensus 303 -~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~----~~~-~~v~l~~ 365 (426)
....++.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++..+ +.. ..++-+.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 345 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDA 345 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 112368899999864 334444443 442 45667777777765 444444332 211 2233333
Q ss_pred HHHhC-CC--CcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 014332 366 LARLC-PN--STGADIRSVCTEAGMFAIRARRKTVTEKDF 402 (426)
Q Consensus 366 la~~t-~g--~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 402 (426)
+..+. .. -+.+++++++++|...+ ....|+.+++
T Consensus 346 ~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 346 LRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 33322 12 25578888888887644 3445666654
No 209
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=2.4e-09 Score=105.59 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-----------------------
Q 014332 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (426)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----------------------- 229 (426)
+....+.|...+.. -..+.++||+||+|+||+++|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566677777654 2456789999999999999999999976331
Q ss_pred -EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 230 -FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 230 -~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
|+.+...+ ++. -+-..+|++.+.+. .....|++||++|.+ +...++.|+..|++ +
T Consensus 75 D~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----P 134 (325)
T PRK06871 75 DFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----P 134 (325)
T ss_pred CEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----C
Confidence 22221100 011 12344555544433 344569999999999 66677777777764 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 351 (426)
+.++++|.+|+.++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999 88 58899999999888877764
No 210
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=2.8e-11 Score=102.24 Aligned_cols=107 Identities=28% Similarity=0.405 Sum_probs=63.3
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecc-hhh-hhhhcch-----HH----HHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELV-QKYVGEG-----AR----MVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~-~l~-~~~~g~~-----~~----~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
+|||+|+||+|||++|+++|+.++..|.++.+. ++. +...|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999998774 332 1222210 00 001111 14999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhc----C--CCCCCCeEEEEEeCCCC-----CCCccccCCCCc
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKVLMATNRPD-----TLDPALLRPGRL 330 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~--~~~~~~v~vI~atn~~~-----~ld~al~r~gRf 330 (426)
. .+..|..+++.+.+.. + +.-...+.||+|-|+.+ .|+.+++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 7 7899999999998742 1 22345688899999764 67777777 76
No 211
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.09 E-value=2.8e-09 Score=115.85 Aligned_cols=198 Identities=20% Similarity=0.221 Sum_probs=122.3
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC-------CcEEEEecchhhhhh-hcchHHHHH-HHHHHHHcCCCEEEEEeCCCc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVIGSELVQKY-VGEGARMVR-ELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~-------~~~i~v~~~~l~~~~-~g~~~~~v~-~lf~~a~~~~p~Il~iDEiD~ 272 (426)
..+|||.|+||||||.+|+++++... .++..+.+....... ...++..+. ..+..| ..+++||||+|.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidk 568 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDK 568 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhh
Confidence 44799999999999999999998542 344443333221100 000000000 011112 234999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCC-------------CCCCccccCCCCcc
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPGRLD 331 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-------------~~ld~al~r~gRf~ 331 (426)
+ +...|..|++++++-. |. .-+.++.||+|+|+. -.|+++|++ |||
T Consensus 569 m-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFD 635 (915)
T PTZ00111 569 C-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD 635 (915)
T ss_pred C-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhc
Confidence 8 7788899999887632 11 123578999999974 246789999 999
Q ss_pred eEEE-ecCCCHHHHHHHHHHHHhcC---------------------------------------------------CCCC
Q 014332 332 RKVE-FGLPDLESRTQIFKIHTRTM---------------------------------------------------NCER 359 (426)
Q Consensus 332 ~~i~-~~~P~~~er~~Il~~~l~~~---------------------------------------------------~~~~ 359 (426)
..+. +..|+.+.-..|-.+.++.. .+.+
T Consensus 636 LIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P 715 (915)
T PTZ00111 636 LIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFP 715 (915)
T ss_pred EEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCC
Confidence 8654 45566655444433222100 0001
Q ss_pred Ccc---HHHHH------Hh-------------------------CC-----CCcHHHHHHHHHHHHHHHHHHcCCCccHH
Q 014332 360 DIR---FELLA------RL-------------------------CP-----NSTGADIRSVCTEAGMFAIRARRKTVTEK 400 (426)
Q Consensus 360 ~v~---l~~la------~~-------------------------t~-----g~sg~di~~l~~~A~~~A~~~~~~~It~e 400 (426)
.+. -+.|. +. .. -.|.++|.++++-|...|..+.+..|+.+
T Consensus 716 ~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~ 795 (915)
T PTZ00111 716 KLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPA 795 (915)
T ss_pred CCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHH
Confidence 000 01111 11 01 14679999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC
Q 014332 401 DFLDAVNKVIKGYQK 415 (426)
Q Consensus 401 d~~~A~~~v~~~~~~ 415 (426)
|+..|++-+......
T Consensus 796 Dv~~Ai~L~~~sl~~ 810 (915)
T PTZ00111 796 DALQAVQIVKSSTFQ 810 (915)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999877655543
No 212
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=3.8e-09 Score=105.76 Aligned_cols=223 Identities=21% Similarity=0.241 Sum_probs=151.0
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC----C-cEEEEecchhhhh-
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----A-CFIRVIGSELVQK- 241 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~----~-~~i~v~~~~l~~~- 241 (426)
..+.|.+.....+++++..++ -.+.+.++++.|.||||||.+...+...+. . ..++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 458999999999999997643 346788999999999999999997776542 2 3477777653221
Q ss_pred ---------h----hcch-HHHHHHHHHH-HHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014332 242 ---------Y----VGEG-ARMVRELFQM-ARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (426)
Q Consensus 242 ---------~----~g~~-~~~v~~lf~~-a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (426)
+ .+.+ .......|.. .... .+-++++||+|.|+... +.+++.++.. .. -+.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFew-p~-lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEW-PK-LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhc-cc-CCc
Confidence 1 1111 1122233332 2222 36799999999997432 3445554443 21 245
Q ss_pred CCeEEEEEeCCCCCCCccccC----CCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCC--ccHHHHHHhCCCCcHHHHH
Q 014332 306 GNIKVLMATNRPDTLDPALLR----PGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD--IRFELLARLCPNSTGADIR 379 (426)
Q Consensus 306 ~~v~vI~atn~~~~ld~al~r----~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~--v~l~~la~~t~g~sg~di~ 379 (426)
.++++|+.+|..+.-|..|-| -+--...+.|++++.++..+||+..+........ ..++.+|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 678899999987665543332 1223458999999999999999999988765532 346788999999998 776
Q ss_pred H---HHHHHHHHHHHHcC----------------CCccHHHHHHHHHHHHhhc
Q 014332 380 S---VCTEAGMFAIRARR----------------KTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 380 ~---l~~~A~~~A~~~~~----------------~~It~ed~~~A~~~v~~~~ 413 (426)
. +|+.|...|-...+ ..|..+++..++.++...-
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 5 67777777766543 2356788888888875443
No 213
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.6e-09 Score=106.12 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=110.3
Q ss_pred cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-----------------------
Q 014332 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (426)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----------------------- 229 (426)
+....+++...+.. -+.+..+||+||+|+||+++|.++|..+-+.
T Consensus 7 l~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 7 LRPDYEQLVGSYQA------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred ChHHHHHHHHHHHc------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34555666666543 2457789999999999999999999976331
Q ss_pred -EEEEecchhhhhhhcchHHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 230 -FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 230 -~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
+..+....- .. .-+-..+|++.+.+ ......|++||++|.+ +....+.|+..|++ +
T Consensus 75 D~~~i~p~~~-~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 135 (334)
T PRK07993 75 DYYTLTPEKG-KS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_pred CEEEEecccc-cc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----C
Confidence 122211100 00 01223445444433 3455579999999999 66677777777764 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg 375 (426)
+.++++|.+|+.++.|.|.+++ |+. .+.|+.|+.++....+.... +.+. .....+++.+.|-.+
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G~~~ 199 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAGAPG 199 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCCCHH
Confidence 7889999999999999999999 985 68999999988887775431 2221 123455666666443
No 214
>PRK12377 putative replication protein; Provisional
Probab=99.07 E-value=1e-09 Score=104.30 Aligned_cols=101 Identities=23% Similarity=0.248 Sum_probs=69.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcchH--HHHHHHHHHHHcCCCEEEEEeCCCcccCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGA--RMVRELFQMARSKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~~--~~v~~lf~~a~~~~p~Il~iDEiD~l~~~ 276 (426)
..+++|+||||||||+||.++|+.+ +..++.+..++++........ .....++... ....+|+|||+.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 4689999999999999999999987 677888888887764322110 0111233333 3445999999977532
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+...+..+.++++.-. .....+|.|||..
T Consensus 178 --------s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 178 --------TKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred --------CHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 4556778888888643 2234578889964
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.3e-09 Score=108.30 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=95.5
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcE-------------------------EEEecchhhh--------------
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF-------------------------IRVIGSELVQ-------------- 240 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~-------------------------i~v~~~~l~~-------------- 240 (426)
+.|.++||+||+|+||+++|+++|+.+.+.. +.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5678999999999999999999999775422 1111110000
Q ss_pred hhhc---------chHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 241 KYVG---------EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 241 ~~~g---------~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
.-.| -+-..+|.+.+.+. .....|++||++|.+ +.+..+.|+..|+ .++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE-----EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE-----EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc-----CCCcC
Confidence 0000 01234555555443 234469999999999 5666677776666 37788
Q ss_pred eEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 014332 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351 (426)
Q Consensus 308 v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 351 (426)
+++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 98 68999999999998888654
No 216
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.07 E-value=1.9e-09 Score=112.34 Aligned_cols=207 Identities=20% Similarity=0.304 Sum_probs=130.9
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~ 242 (426)
.+.+++|.+..++.+.+.+.. -......++++|++|||||++|++++... +.+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~-----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR-----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHH-----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 456788988888888777753 12346679999999999999999999976 5799999998773321
Q ss_pred hcchHHHHHHHHHHH---------------HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-----
Q 014332 243 VGEGARMVRELFQMA---------------RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF----- 302 (426)
Q Consensus 243 ~g~~~~~v~~lf~~a---------------~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~----- 302 (426)
.-..+|... .....+.|||||+|.+ +...|..++++++...-.
T Consensus 205 ------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 ------IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred ------HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 111222211 1122458999999999 788999999988753211
Q ss_pred -CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CCC-CCccHHH
Q 014332 303 -DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFEL 365 (426)
Q Consensus 303 -~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~----~~~-~~v~l~~ 365 (426)
....++.+|+||+.. ..+.+.|.. |+. .+.+..|...+|.+ +++.++... +.. ..++.+.
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 344 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPET 344 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 112367899999763 244455555 552 35555566555543 555555432 211 1233333
Q ss_pred HHHhC-CCC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 366 LARLC-PNS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 366 la~~t-~g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+..+. ..+ +-++++++++.|...+ ....|+.+|+-..+
T Consensus 345 ~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 345 EAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 33322 223 4478888888877654 55678888875444
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=4.3e-09 Score=103.61 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=111.3
Q ss_pred cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------------------EE
Q 014332 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------------FI 231 (426)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---------------------~i 231 (426)
+..+.+.+...+.. -+-|..+||+||+|+||+++|.++|+.+-+. +.
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 45667777777654 2456789999999999999999999876331 11
Q ss_pred EEe-cchhhh-hh-hcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014332 232 RVI-GSELVQ-KY-VGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (426)
Q Consensus 232 ~v~-~~~l~~-~~-~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~ 304 (426)
.+. .++-.+ +. ..-+-..+|++.+.+.. ....|++||++|.+ +....+.|+..|++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----C
Confidence 111 000000 00 00123445665554432 33469999999999 66777777777775 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg 375 (426)
..++++|.+|+.++.|-|.+++ |+ ..+.|+.|+.++....|... +.+ ..+...++..+.|..+
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 6788899999999999999999 98 68899999998887777542 222 1223355666666544
No 218
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.1e-09 Score=103.81 Aligned_cols=95 Identities=36% Similarity=0.490 Sum_probs=72.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhcch-HHHHHHHHHHHH----cCCCEEEEEeCCCcccCC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g~~-~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~ 276 (426)
.+|||.||+|+|||+||+.+|+-++.||...+|..|.+ .|+|+. +..+..++..|. ..+..|+||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 36999999999999999999999999999999999976 588885 455666666542 233359999999999843
Q ss_pred ccCCC---CCCChHHHHHHHHHHH
Q 014332 277 RFDDG---VGGDNEVQRTMLEIVN 297 (426)
Q Consensus 277 r~~~~---~~~~~~~~~~l~~ll~ 297 (426)
...-+ +-+.+.+|..|+.+++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred CccccccccccchhHHHHHHHHhc
Confidence 32211 1234677888887775
No 219
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.04 E-value=1.8e-10 Score=99.93 Aligned_cols=107 Identities=28% Similarity=0.501 Sum_probs=76.8
Q ss_pred cCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEecchhhhhhhcchH
Q 014332 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQKYVGEGA 247 (426)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l~~~~~g~~~ 247 (426)
+|.+..++++++.+... ......|||+|++||||+++|++++...+ .+|+.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 46777888888877641 14567899999999999999999999764 366666665432
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 248 ~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.++++.+ ....|||+|+|.+ +.+.|..+.+++...+ ..++.+|+++..+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQD 110 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCC
Confidence 3355554 4459999999999 7889999999988732 5567888888653
No 220
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.5e-10 Score=113.95 Aligned_cols=211 Identities=19% Similarity=0.257 Sum_probs=121.6
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC----CcEE------EE
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFI------RV 233 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~----~~~i------~v 233 (426)
...|.||.|++.+++.+.-+..- ..++|++||||||||++|+.+..-+- ..++ .+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 45889999999999999887753 57899999999999999999887431 0111 11
Q ss_pred ecchhh-----h--hh--hcchHHHHHHHHH---------HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHH
Q 014332 234 IGSELV-----Q--KY--VGEGARMVRELFQ---------MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (426)
Q Consensus 234 ~~~~l~-----~--~~--~g~~~~~v~~lf~---------~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (426)
++.... . .| .+.+... ..+.- -...+ ..||||||+-.+ . +.+++-
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH-~GVLFLDElpef-----------~----~~iLe~ 302 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAH-NGVLFLDELPEF-----------K----RSILEA 302 (490)
T ss_pred cccccccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeec-CCEEEeeccchh-----------h----HHHHHH
Confidence 110000 0 00 0000000 00000 00111 249999998665 2 233333
Q ss_pred HHH-hcC-----------CCCCCCeEEEEEeCC-----------------------CCCCCccccCCCCcceEEEecCCC
Q 014332 296 VNQ-LDG-----------FDARGNIKVLMATNR-----------------------PDTLDPALLRPGRLDRKVEFGLPD 340 (426)
Q Consensus 296 l~~-l~~-----------~~~~~~v~vI~atn~-----------------------~~~ld~al~r~gRf~~~i~~~~P~ 340 (426)
|.+ |+. +.-..++.+|+++|. ...+...+++ |+|..++++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 322 221 111235777888885 1345557777 999999999876
Q ss_pred HHHHH--------------HHHHHHH----hcCC--CCCCccHHHH----------------HHhCCCCcHHHHHHHHHH
Q 014332 341 LESRT--------------QIFKIHT----RTMN--CERDIRFELL----------------ARLCPNSTGADIRSVCTE 384 (426)
Q Consensus 341 ~~er~--------------~Il~~~l----~~~~--~~~~v~l~~l----------------a~~t~g~sg~di~~l~~~ 384 (426)
..++. .+++.+- +... ++..++-..| +-..-++|.+....+++-
T Consensus 381 ~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKv 460 (490)
T COG0606 381 AGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKV 460 (490)
T ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43331 2222111 1111 1222221222 222336777888888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHH
Q 014332 385 AGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 385 A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
|...|-.++...|...|+.+|+.-
T Consensus 461 arTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 461 ARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred HhhhhcccCcchhhHHHHHHHHhh
Confidence 888888888889999999999863
No 221
>PRK08181 transposase; Validated
Probab=99.03 E-value=2.3e-09 Score=103.16 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcch-HHHHHHHHHHHHcCCCEEEEEeCCCcccCC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~-~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~ 276 (426)
...+++|+||||||||+||.++++++ |..++.++..+++....... .......+... ..+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC-
Confidence 45689999999999999999999854 77788888888877642211 11122333333 3445999999988743
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+...+..+.++++...+ . -.+|+|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---R--RSILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---C--CCEEEEcCCC
Confidence 45567788899887542 1 2478888875
No 222
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.03 E-value=4.5e-09 Score=108.97 Aligned_cols=207 Identities=20% Similarity=0.288 Sum_probs=127.4
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~ 242 (426)
.+..++|.+..+..+.+.+.. -......++++|++||||+++|+++...+ +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~-----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK-----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHH-----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 344688888877777666543 12345679999999999999999998764 5799999998763321
Q ss_pred hcchHHHHHHHHHH---------------HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC---
Q 014332 243 VGEGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF--- 302 (426)
Q Consensus 243 ~g~~~~~v~~lf~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~--- 302 (426)
.-..+|.. .......+|||||+|.+ +...|..++.+++.-. ..
T Consensus 210 ------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 210 ------LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGH 272 (457)
T ss_pred ------HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCC
Confidence 11112211 01122359999999999 7888999998887532 11
Q ss_pred -CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcCC----CC-CCccHHH
Q 014332 303 -DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTMN----CE-RDIRFEL 365 (426)
Q Consensus 303 -~~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~~----~~-~~v~l~~ 365 (426)
....++.+|+||+.. ..+.+.+.. |+. .+.+..|...+|.+ ++..++.... .. ..++.+.
T Consensus 273 ~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a 349 (457)
T PRK11361 273 QTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMA 349 (457)
T ss_pred ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 112358899999864 223333333 332 56677787777754 4444443321 11 1233333
Q ss_pred HHHhCC-CC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 366 LARLCP-NS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 366 la~~t~-g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+..+.. .+ +-+++++++++|...+ ....|+.+|+-..+
T Consensus 350 ~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 350 MSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 333221 22 5578888888877543 45567777775443
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.01 E-value=2.9e-09 Score=101.10 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=69.5
Q ss_pred CcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcch---HHHHHHHHHHHHcCCCEEEEEeCCCcccCC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG---ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~---~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~ 276 (426)
.+++|+|+||||||+|+.++|+++ +..++.++.+++........ ......+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999987 77888888888876543221 111223444433 456999999988632
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+......+.++++.-. ..+..+|++||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 3444567778887632 2345588899864
No 224
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3e-09 Score=101.78 Aligned_cols=95 Identities=31% Similarity=0.497 Sum_probs=70.8
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhcchH-HHHHHHHHHHH----cCCCEEEEEeCCCcccCC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFQMAR----SKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g~~~-~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~ 276 (426)
.++||.||+|||||+||+.+|+.++.||..-++..|.. .|+|+.- ..+-.+++.|. .....||||||||.++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 47999999999999999999999999999999988875 5888853 34445554432 122349999999999876
Q ss_pred ccCCC---CCCChHHHHHHHHHHH
Q 014332 277 RFDDG---VGGDNEVQRTMLEIVN 297 (426)
Q Consensus 277 r~~~~---~~~~~~~~~~l~~ll~ 297 (426)
....+ +-+.+.+|..|+.+++
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc
Confidence 53322 1234667888877765
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.98 E-value=4.2e-09 Score=104.29 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=78.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc---hHHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE---GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~---~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
..+++|+||+|||||+||.++|+++ +..++.++..+++...... ........++... ...+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999986 7788889988887654221 1111111233333 335999999987632
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-----CCCCccccCCCCcc---eEEEecCCC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-----DTLDPALLRPGRLD---RKVEFGLPD 340 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-----~~ld~al~r~gRf~---~~i~~~~P~ 340 (426)
++..+..+.++++..- ..+-.+|+|||.+ ..+++.+.+ |+. ..+.|.-.|
T Consensus 261 ---------t~~~~~~Lf~iin~R~----~~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d 318 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRL----LRQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGED 318 (329)
T ss_pred ---------CHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcC
Confidence 5666778888888743 1123478888863 224455555 542 244444444
No 226
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=9.5e-09 Score=101.12 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-----------------------
Q 014332 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (426)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----------------------- 229 (426)
+.+..+++...+.. -+.+..+||+||.|+||+++|+++|..+-+.
T Consensus 8 l~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 45667777777654 2457789999999999999999999976321
Q ss_pred EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014332 230 FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (426)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (426)
|+.+.... .++.+ +-..+|.+.+.+. .....|++||++|.+ +....+.|+..|++ ++
T Consensus 76 ~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 136 (319)
T PRK06090 76 LHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PA 136 (319)
T ss_pred EEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 22222110 00001 2234455444432 334569999999999 56677777777764 67
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 014332 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (426)
Q Consensus 306 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 350 (426)
.++++|..|+.++.+-|.+++ |+ ..+.|+.|+.++..+.+..
T Consensus 137 ~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 889999999999999999999 98 5889999999988887754
No 227
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.96 E-value=3.4e-09 Score=102.85 Aligned_cols=205 Identities=18% Similarity=0.262 Sum_probs=131.4
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
...+...|+.|++.+..++.+.+..... .-....+||.|.+||||-++||++...+ ..||+-++|.
T Consensus 196 ~~~~~~~F~~~v~~S~~mk~~v~qA~k~-----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA 264 (511)
T COG3283 196 AAQDVSGFEQIVAVSPKMKHVVEQAQKL-----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCA 264 (511)
T ss_pred ccccccchHHHhhccHHHHHHHHHHHHh-----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecC
Confidence 3456778888999888887776655321 1124469999999999999999998765 6899999998
Q ss_pred hhhhhh-----hcchH--HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CC----C
Q 014332 237 ELVQKY-----VGEGA--RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF----D 303 (426)
Q Consensus 237 ~l~~~~-----~g~~~--~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~----~ 303 (426)
.+-... .|..+ .--.-+|+.|..+ .+|+|||..+ ++..|..++.+|+... .. .
T Consensus 265 ~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 265 SLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred CCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcce
Confidence 764432 11111 1223467777555 8999999998 8999999999998532 11 1
Q ss_pred CCCCeEEEEEeCCC--CCCCccccCCCCcce--EEEecCCCHHHHHH--------HHHHHHhcCCCC-CCccHHHHHHhC
Q 014332 304 ARGNIKVLMATNRP--DTLDPALLRPGRLDR--KVEFGLPDLESRTQ--------IFKIHTRTMNCE-RDIRFELLARLC 370 (426)
Q Consensus 304 ~~~~v~vI~atn~~--~~ld~al~r~gRf~~--~i~~~~P~~~er~~--------Il~~~l~~~~~~-~~v~l~~la~~t 370 (426)
..-+|.||+||..+ +.+...-.|...|.+ ++.+..|...+|.. ++..+..+.++. +..+.+.+...+
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 12369999999765 333333333333332 66777777777754 334444555544 334444343332
Q ss_pred C-CC--cHHHHHHHHHHHHHHH
Q 014332 371 P-NS--TGADIRSVCTEAGMFA 389 (426)
Q Consensus 371 ~-g~--sg~di~~l~~~A~~~A 389 (426)
. ++ +-+++.+++-+|....
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHh
Confidence 2 22 4478888877777543
No 228
>PRK15115 response regulator GlrR; Provisional
Probab=98.95 E-value=2.2e-08 Score=103.59 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=122.4
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 245 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~ 245 (426)
.++|.+.....+.+.+... ......++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~-- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL-- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH--
Confidence 3666666666555554331 1334579999999999999999999875 57999999987633211
Q ss_pred hHHHHHHHHHHH---------------HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--CC----C
Q 014332 246 GARMVRELFQMA---------------RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----A 304 (426)
Q Consensus 246 ~~~~v~~lf~~a---------------~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~----~ 304 (426)
-..+|..+ ......+|||||+|.| +...|..++.+++.-.. .. .
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 202 ----ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ----HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 11222211 1122359999999999 78899999998875321 11 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH----HHHHHHhcC----CCC-CCccHH---H
Q 014332 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFE---L 365 (426)
Q Consensus 305 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er~~----Il~~~l~~~----~~~-~~v~l~---~ 365 (426)
..++.+|+||+.. ..+.+.+.. |+ ..+.+..|...+|.+ +++.+++.. +.. ..++-+ .
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 343 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKR 343 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 2368899999863 122222222 33 256777788888754 444554432 111 123333 3
Q ss_pred HHHhC-CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHH
Q 014332 366 LARLC-PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDA 405 (426)
Q Consensus 366 la~~t-~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A 405 (426)
|.... +| +.++++++++.|...+ ....|+.+++...
T Consensus 344 L~~~~Wpg-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 344 LMTASWPG-NVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred HHhCCCCC-hHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 33333 23 5578888888876543 4456777776543
No 229
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.5e-09 Score=106.38 Aligned_cols=143 Identities=20% Similarity=0.291 Sum_probs=92.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh-hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL-VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l-~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~ 280 (426)
-.++||+||||+|||.||-.+|..++.||+.+-.++- +...-.+.-..+..+|+.|....-+||++|+|+.|..--.-+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG 617 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG 617 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC
Confidence 3479999999999999999999999999999865543 322222223457889999999999999999999985211000
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCCc-cccCCCCcceEEEecCCCH-HHHHHHHHH
Q 014332 281 GVGGDNEVQRTMLEIVNQLDGFDARG-NIKVLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDL-ESRTQIFKI 350 (426)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~~~~~~~-~v~vI~atn~~~~ld~-al~r~gRf~~~i~~~~P~~-~er~~Il~~ 350 (426)
. --++-+.++|+-+|. ...+.+ +.+|++||.+.+.|.. .+.. .|+..+.+|..+. ++..+++..
T Consensus 618 P-RfSN~vlQaL~VllK---~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 618 P-RFSNLVLQALLVLLK---KQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred c-hhhHHHHHHHHHHhc---cCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 0 002233333333333 333333 4667777776544432 3444 7888888887654 555555543
No 230
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.92 E-value=1.4e-08 Score=105.64 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=127.8
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhc
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVG 244 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g 244 (426)
..++|.+....++.+.+.. .......+++.|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~-----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~- 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGR-----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI- 201 (463)
T ss_pred cceeecCHHHHHHHHHHHH-----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH-
Confidence 4588888888887776643 12345679999999999999999999865 57999999987633211
Q ss_pred chHHHHHHHHHH---------------HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------C
Q 014332 245 EGARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------D 303 (426)
Q Consensus 245 ~~~~~v~~lf~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~ 303 (426)
-..+|.. ......+.||||||+.+ +...|..++++++..... .
T Consensus 202 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 202 -----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred -----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCce
Confidence 0111110 11223468999999999 788899999988753211 1
Q ss_pred CCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHH----HHHHHHHHhcC----CCC-CCccHHHHH
Q 014332 304 ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESR----TQIFKIHTRTM----NCE-RDIRFELLA 367 (426)
Q Consensus 304 ~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er----~~Il~~~l~~~----~~~-~~v~l~~la 367 (426)
...++.+|++|+.. ..+.+.|.. |+. .+.+..|...+| ..+++.++... +.. ..++.+.+.
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 342 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALE 342 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 12367899998764 233444444 443 344445554444 44555555433 211 123444443
Q ss_pred HhC-CCC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 368 RLC-PNS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 368 ~~t-~g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+. .++ +-++|+++++.|...+ ....|+.+|+...+
T Consensus 343 ~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 343 RLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 332 133 3478888888887655 45678988886555
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.90 E-value=1.8e-08 Score=94.01 Aligned_cols=183 Identities=18% Similarity=0.325 Sum_probs=99.8
Q ss_pred cCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---EEEEec-chh----hhhh
Q 014332 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIG-SEL----VQKY 242 (426)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---~i~v~~-~~l----~~~~ 242 (426)
.|.+..++.|.+++.. .+...++|+||.|+|||+|++.+.+.+... .+.+.. ... ...+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5778888888887754 346789999999999999999999987321 111111 000 0000
Q ss_pred -------------h-----------------cchHHHHHHHHHHHHcC-CCEEEEEeCCCccc-CCccCCCCCCChHHHH
Q 014332 243 -------------V-----------------GEGARMVRELFQMARSK-KACIVFFDEVDAIG-GARFDDGVGGDNEVQR 290 (426)
Q Consensus 243 -------------~-----------------g~~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~-~~r~~~~~~~~~~~~~ 290 (426)
. ......+..++...... ...||+|||++.+. ... .......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 0 11233455566555543 23799999999996 211 1345555
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCC------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-C-CCCcc
Q 014332 291 TMLEIVNQLDGFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-C-ERDIR 362 (426)
Q Consensus 291 ~l~~ll~~l~~~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~-~-~~~v~ 362 (426)
.+..+++. .....++.+|+++... ..-...+.. |+.. +.+++.+.++..++++..+.... + .++.+
T Consensus 143 ~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T PF01637_consen 143 SLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDED 216 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHH
T ss_pred HHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHH
Confidence 55555554 2234555555555432 122233444 7876 99999999999999999876651 1 14456
Q ss_pred HHHHHHhCCCCcHHHHH
Q 014332 363 FELLARLCPNSTGADIR 379 (426)
Q Consensus 363 l~~la~~t~g~sg~di~ 379 (426)
++.+...+.|.. +.|.
T Consensus 217 ~~~i~~~~gG~P-~~l~ 232 (234)
T PF01637_consen 217 IEEIYSLTGGNP-RYLQ 232 (234)
T ss_dssp HHHHHHHHTT-H-HHHH
T ss_pred HHHHHHHhCCCH-HHHh
Confidence 778888887754 3443
No 232
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=1.5e-08 Score=86.67 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=75.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD 279 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~ 279 (426)
.+.++|+||+|+|||++++.+++.+. ..++.++..+.......... +...+.........+|||||++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------ 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh------
Confidence 35689999999999999999999876 77888887765442211111 222222222224569999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CccccCCCCcceEEEecCCCHHH
Q 014332 280 DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL----DPALLRPGRLDRKVEFGLPDLES 343 (426)
Q Consensus 280 ~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l----d~al~r~gRf~~~i~~~~P~~~e 343 (426)
+.....+..+.+. ..++.+|+|++....+ ...+ +||.. .+++.+.+..|
T Consensus 74 ------~~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 ------PDWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------ccHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 3344555555542 2356677776654433 2233 35774 77888877765
No 233
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1e-08 Score=101.58 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=94.7
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc-------------------------EEEEecchhhhhhhc-----chHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------------------FIRVIGSELVQKYVG-----EGARM 249 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~-------------------------~i~v~~~~l~~~~~g-----~~~~~ 249 (426)
+.+.++||+||+|+|||++|+.+|+.+.+. |+.+....-. ...| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 567789999999999999999999976431 3333221000 0001 12345
Q ss_pred HHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCcccc
Q 014332 250 VRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 325 (426)
Q Consensus 250 v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~ 325 (426)
+|++.+.+.. ....|++||+++.+ +...+..++.++++. ..++.+|++|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep-----~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEP-----PPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhC-----cCCCEEEEEeCChHhChHHHH
Confidence 6666665543 34469999999999 788888888888764 245778889999999999999
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHH
Q 014332 326 RPGRLDRKVEFGLPDLESRTQIFKI 350 (426)
Q Consensus 326 r~gRf~~~i~~~~P~~~er~~Il~~ 350 (426)
+ |+ ..+.|++|+.++....|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 87 6889999999988877754
No 234
>PRK06526 transposase; Provisional
Probab=98.88 E-value=6.9e-09 Score=99.24 Aligned_cols=102 Identities=23% Similarity=0.337 Sum_probs=67.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcch-HHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~-~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
..+.+++|+||||||||+||.+++.++ |..++.+..++++....... ...+...+... ..+.+|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 346789999999999999999999875 66666677776665432110 11112222222 3456999999998732
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+...+..+.++++.... . ..+|+|||.+
T Consensus 174 ---------~~~~~~~L~~li~~r~~---~--~s~IitSn~~ 201 (254)
T PRK06526 174 ---------EPEAANLFFQLVSSRYE---R--ASLIVTSNKP 201 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHh---c--CCEEEEcCCC
Confidence 45666778888876432 1 2378888875
No 235
>PRK06921 hypothetical protein; Provisional
Probab=98.84 E-value=3e-08 Score=95.61 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCc-ccC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA-IGG 275 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~-l~~ 275 (426)
...+++|+||||+|||+|+.++|+++ +..++++...+++....... ......++.. ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 46789999999999999999999975 56777787766655432211 1112222222 3445999999954 212
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.. ..+...+..+..+++.... .+..+|+|||.+
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~~----~~k~tIitsn~~ 225 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRYL----NHKPILISSELT 225 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHHH----CCCCEEEECCCC
Confidence 11 1134445677788876431 122367788863
No 236
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.82 E-value=7.2e-08 Score=99.49 Aligned_cols=204 Identities=18% Similarity=0.278 Sum_probs=120.5
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 245 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~ 245 (426)
.+.|.+.....+...+.. -......++++|.+||||+++|+++.... +.+|+.++|..+......
T Consensus 140 ~lig~s~~~~~~~~~i~~-----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~- 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL-----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE- 207 (441)
T ss_pred ceEecCHHHHHHHHHHhh-----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH-
Confidence 366666666666555533 12345679999999999999999998765 579999999876432211
Q ss_pred hHHHHHHHHHH---------------HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC--CC----C
Q 014332 246 GARMVRELFQM---------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----A 304 (426)
Q Consensus 246 ~~~~v~~lf~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~--~~----~ 304 (426)
..+|.. .....+++||||||+.+ +...|..++.+++.-.. .. .
T Consensus 208 -----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 208 -----SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred -----HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCcee
Confidence 112211 11223569999999999 77888888888865321 10 1
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcce-------EEEecCCCHHHHHH----HHHHHHhcC----CCC-CCccHHHHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDR-------KVEFGLPDLESRTQ----IFKIHTRTM----NCE-RDIRFELLAR 368 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~-------~i~~~~P~~~er~~----Il~~~l~~~----~~~-~~v~l~~la~ 368 (426)
..++.+|++|+..- .....+|+|.. .+.+..|...+|.+ +++.++... +.. ..++.+.+..
T Consensus 272 ~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (441)
T PRK10365 272 SVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 (441)
T ss_pred eeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 23577898887641 11112233321 56677777776654 455554432 111 1233333333
Q ss_pred hCC-CC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCP-NS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~-g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+.. .+ +.++++++++.|...+ ....|+.+++...+
T Consensus 349 L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 349 LIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 221 22 4578888888776543 44567777765433
No 237
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.82 E-value=3.7e-08 Score=104.40 Aligned_cols=193 Identities=15% Similarity=0.105 Sum_probs=128.5
Q ss_pred CcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhhhhhhcch--HHHHH--------HHHHHHHcCCCEEEEEeCC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEG--ARMVR--------ELFQMARSKKACIVFFDEV 270 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~~~~~g~~--~~~v~--------~lf~~a~~~~p~Il~iDEi 270 (426)
.||+|.|++|||||+++++++.-+. .||+.+..+.-....+|.. +..++ -++..| + ..|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A--h-~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA--D-GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec--c-CCEEEecCc
Confidence 6899999999999999999999875 4777765544333344432 11111 111111 2 249999999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCC---CCCCccccCCCCcceEEEecCC
Q 014332 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P 339 (426)
..+ ++.++..|++-++.- ++. ....++.+|++-|.. ..|+++++. ||+..+.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 998 788899998888763 222 234567788864432 458889999 99999999988
Q ss_pred CHHHHH-------HHHHH--HHhcCCCCCCccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 340 DLESRT-------QIFKI--HTRTMNCERDIRFELLARLC--PNS-TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 340 ~~~er~-------~Il~~--~l~~~~~~~~v~l~~la~~t--~g~-sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
+..+.. +|... .+....+. +-.+..++..+ -|. |.+--..+++.|...|..+++..|+.+|+.+|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765422 23322 22222222 11222332221 244 6666677889999999999999999999999999
Q ss_pred HHHhh
Q 014332 408 KVIKG 412 (426)
Q Consensus 408 ~v~~~ 412 (426)
-|+..
T Consensus 249 lvL~h 253 (584)
T PRK13406 249 LVLAP 253 (584)
T ss_pred HHHHh
Confidence 88743
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.81 E-value=4e-08 Score=94.07 Aligned_cols=117 Identities=20% Similarity=0.322 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcchHH-
Q 014332 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR- 248 (426)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~~~- 248 (426)
...+...+...+.+ +..+.+++|+||||+|||+||-|+++++ |..++.+..+++++........
T Consensus 88 ~~~~l~~~~~~~~~------------~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~ 155 (254)
T COG1484 88 DKKALEDLASLVEF------------FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEG 155 (254)
T ss_pred hHHHHHHHHHHHHH------------hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcC
Confidence 34455555555543 2367899999999999999999999986 7888999999988764332211
Q ss_pred H-HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 249 M-VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 249 ~-v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
. -..+.... ....+|+|||+-..-. +......+.+++...-. . ... |+|||.+
T Consensus 156 ~~~~~l~~~l--~~~dlLIiDDlG~~~~---------~~~~~~~~~q~I~~r~~---~-~~~-~~tsN~~ 209 (254)
T COG1484 156 RLEEKLLREL--KKVDLLIIDDIGYEPF---------SQEEADLLFQLISRRYE---S-RSL-IITSNLS 209 (254)
T ss_pred chHHHHHHHh--hcCCEEEEecccCccC---------CHHHHHHHHHHHHHHHh---h-ccc-eeecCCC
Confidence 1 11122212 3345999999987521 44455666676655331 1 122 8888865
No 239
>PRK09183 transposase/IS protein; Provisional
Probab=98.79 E-value=2.4e-08 Score=95.97 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc-hHHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~-~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
....+++|+||||||||+||.+++... |..+..+++.++...+... ....+...+... ...+.+++|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 446789999999999999999998764 6677777877776543211 111233445443 24556999999987632
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+.+....++++++...+ .. .+|+|||.+
T Consensus 179 ---------~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 ---------SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred ---------ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 34556678888876542 12 368888864
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.79 E-value=3.1e-08 Score=97.31 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcch-HHHHHHHHHHHHcCCCEEEEEeCCCcccCC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~-~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~ 276 (426)
..+|++|+||+|||||+||.|+|+++ |.++..+..++++....... ...+...++... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 46799999999999999999999987 77788888888766542221 111233343332 345999999976521
Q ss_pred ccCCCCCCChHHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 277 RFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 277 r~~~~~~~~~~~~~~l-~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+......+ ..+++.-- ..+..+|+|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 33444334 34555320 1345688899964
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.77 E-value=1.3e-08 Score=92.30 Aligned_cols=102 Identities=23% Similarity=0.372 Sum_probs=65.7
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcch-HHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~-~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
..+.+++|+||||||||+||.++++++ +.++..++.++++....... .......+..... +.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee-
Confidence 456799999999999999999999865 78888899998877643221 1112233444433 3499999986542
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.+......+.++++...+ . + .+|+|||..
T Consensus 122 --------~~~~~~~~l~~ii~~R~~---~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYE---R-K-PTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHH---T---EEEEEESS-
T ss_pred --------ecccccccchhhhhHhhc---c-c-CeEeeCCCc
Confidence 145566777888877542 1 2 477799963
No 242
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=4.1e-07 Score=92.97 Aligned_cols=220 Identities=15% Similarity=0.170 Sum_probs=124.9
Q ss_pred CCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 151 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
.+.....|++++.+.+.+++.-...-+.++++|+.. -..|. .--..+-+||+||+||||||.++.++.++|..+
T Consensus 65 ~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~----~~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 65 KEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQ----VAEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred CccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHH----HHHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 345667899999999999999999999999999861 01110 112345699999999999999999999999888
Q ss_pred EEEecch-------hhhhhhcch------HHHHHHHHHHH------------HcCCCEEEEEeCCCcccCCccCCCCCCC
Q 014332 231 IRVIGSE-------LVQKYVGEG------ARMVRELFQMA------------RSKKACIVFFDEVDAIGGARFDDGVGGD 285 (426)
Q Consensus 231 i~v~~~~-------l~~~~~g~~------~~~v~~lf~~a------------~~~~p~Il~iDEiD~l~~~r~~~~~~~~ 285 (426)
+.-..+- +-+...+.. -.........+ ....+.+|++||+-..+... +
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~ 211 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------D 211 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------h
Confidence 7765211 111000000 01111111112 11345699999998775421 2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCccccCC------CCcceEEEecCCCHHHHHHHHHHHHhcCCCC
Q 014332 286 NEVQRTMLEIVNQLDGFDARGNIKVLMAT-NRPDTLDPALLRP------GRLDRKVEFGLPDLESRTQIFKIHTRTMNCE 358 (426)
Q Consensus 286 ~~~~~~l~~ll~~l~~~~~~~~v~vI~at-n~~~~ld~al~r~------gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~ 358 (426)
.+.++.+++++... ..-.+++|.|- +.++..++..+.+ .|+ ..|.|-+-...-.++.|+..+......
T Consensus 212 ~~~f~evL~~y~s~----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~ 286 (634)
T KOG1970|consen 212 SETFREVLRLYVSI----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANK 286 (634)
T ss_pred HHHHHHHHHHHHhc----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhccc
Confidence 33333333343331 12234333332 2223333322221 244 367777766666666666655543322
Q ss_pred -CC--c-cHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014332 359 -RD--I-RFELLARLCPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 359 -~~--v-~l~~la~~t~g~sg~di~~l~~~A~~~A 389 (426)
.. + +...+-..+.|. ++||+.+++...+.+
T Consensus 287 ~s~~k~~~~~~v~~i~~~s-~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 287 KSGIKVPDTAEVELICQGS-GGDIRSAINSLQLSS 320 (634)
T ss_pred ccCCcCchhHHHHHHHHhc-CccHHHHHhHhhhhc
Confidence 11 1 233444455553 349999999888775
No 243
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=2.7e-07 Score=89.32 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc----------------EEEEecchh
Q 014332 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------FIRVIGSEL 238 (426)
Q Consensus 175 ~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~----------------~i~v~~~~l 238 (426)
...++|...+.. -+-+..+||+||+|+||+.+|.++|..+-|. ++.+....
T Consensus 4 ~~~~~L~~~i~~------------~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~- 70 (290)
T PRK05917 4 AAWEALIQRVRD------------QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG- 70 (290)
T ss_pred HHHHHHHHHHHc------------CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-
Confidence 344566666653 2456789999999999999999999976442 11121100
Q ss_pred hhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 239 VQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
.++. -+-..+|++.+.+. .....|++||++|.+ +.+.++.|+.+|++ ++.++++|..|
T Consensus 71 ~~~~--I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~ 132 (290)
T PRK05917 71 KGRL--HSIETPRAIKKQIWIHPYESPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTS 132 (290)
T ss_pred CCCc--CcHHHHHHHHHHHhhCccCCCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEe
Confidence 0000 02334455544433 344569999999999 67778888888875 67889999999
Q ss_pred CCCCCCCccccCCCCcceEEEecCC
Q 014332 315 NRPDTLDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 315 n~~~~ld~al~r~gRf~~~i~~~~P 339 (426)
+.++.+.|.+++ |+ ..+.|+.+
T Consensus 133 ~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 133 AKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CChhhCcHHHHh--cc-eEEEccch
Confidence 999999999999 88 46677754
No 244
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.65 E-value=4.1e-07 Score=96.94 Aligned_cols=195 Identities=25% Similarity=0.228 Sum_probs=120.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEE-EecchhhhhhhcchHHHHHHHH--H---HH---HcCCCEEEEEeCCCcc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR-VIGSELVQKYVGEGARMVRELF--Q---MA---RSKKACIVFFDEVDAI 273 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~-v~~~~l~~~~~g~~~~~v~~lf--~---~a---~~~~p~Il~iDEiD~l 273 (426)
-+|||.|.||||||.|.+.+++-+...++. -.++.- +|-++..+++-+ + .| ....++|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 469999999999999999999876443322 112111 111111111111 0 11 1123469999999998
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCccccCCCCcce
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDR 332 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~ 332 (426)
+......+.+.+++-. |+ .-+.++-|+||+|+.. .|+++|++ |||.
T Consensus 396 -----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 -----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred -----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 5666777777776621 11 1234577889999743 57788999 9998
Q ss_pred EEEecC-CCHHHHHH----HHHHHHhcCC------------------------------CCCCcc---HHHHH-----Hh
Q 014332 333 KVEFGL-PDLESRTQ----IFKIHTRTMN------------------------------CERDIR---FELLA-----RL 369 (426)
Q Consensus 333 ~i~~~~-P~~~er~~----Il~~~l~~~~------------------------------~~~~v~---l~~la-----~~ 369 (426)
.+.+.. |+.+.-.. ++..|..... +.+.+. .+.|. .+
T Consensus 463 ifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~R 542 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMR 542 (682)
T ss_pred eEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhh
Confidence 776664 66543333 4444421000 101110 11111 11
Q ss_pred ----------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 014332 370 ----------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 370 ----------t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~ 414 (426)
+...|.+++.++++-|...|..+.+..|+.+|+.+|++-+.....
T Consensus 543 k~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~ 597 (682)
T COG1241 543 KKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLK 597 (682)
T ss_pred hccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 122578999999999999999999999999999999998875543
No 245
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.62 E-value=3.3e-06 Score=79.23 Aligned_cols=183 Identities=18% Similarity=0.223 Sum_probs=114.6
Q ss_pred cceEecCCCChHHHHHHHHHHhcCC---cEEEEecchh-----hhhhhcc------------hHHHHHHHHHHHH-cCCC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGSEL-----VQKYVGE------------GARMVRELFQMAR-SKKA 262 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~---~~i~v~~~~l-----~~~~~g~------------~~~~v~~lf~~a~-~~~p 262 (426)
-+.++|+-|+|||+++|++...++. ..+.++...+ ...++.+ .+..-+.+.+... ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 5788999999999999977776632 2334433322 1111111 1122233333333 3556
Q ss_pred EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCC------CCcceEEEe
Q 014332 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP------GRLDRKVEF 336 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~------gRf~~~i~~ 336 (426)
-++++||.+.+. .+....+..|.+.-......-.+++|+-.. |.+.++.+ .|++..|++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEec
Confidence 899999999984 333344444443333222223344444321 22222211 288777999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCc----cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 014332 337 GLPDLESRTQIFKIHTRTMNCERDI----RFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 402 (426)
Q Consensus 337 ~~P~~~er~~Il~~~l~~~~~~~~v----~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 402 (426)
++.+.++-..+++.+++......++ .+..++..+.| .++-|.++|..|...|...+...|+...+
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 9999999999999999877544332 34567778888 56699999999999999999998887654
No 246
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.61 E-value=4.9e-07 Score=85.22 Aligned_cols=159 Identities=20% Similarity=0.238 Sum_probs=94.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (426)
..+..++||+|||||.+++.+|+.+|.+++..+|++-++ ...+..+|.-+... .+.+++||++.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 457789999999999999999999999999999987643 34455666544332 358999999999
Q ss_pred CCCChHHHHHHHHHHHHhcC---------------CCCCCCeEEEEEeCC----CCCCCccccCCCCcceEEEecCCCHH
Q 014332 282 VGGDNEVQRTMLEIVNQLDG---------------FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (426)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~~---------------~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 342 (426)
+.++...+.+.+..+.. +.-..++-+.+|.|. ...|++.|+. .| |.+.+..||..
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 77787777766655421 011224555566663 3578888875 45 89999999987
Q ss_pred HHHHHHHHHHhcCCCCCCccHHHHHH-----------hC-----CCCcHHHHHHHHHHHHH
Q 014332 343 SRTQIFKIHTRTMNCERDIRFELLAR-----------LC-----PNSTGADIRSVCTEAGM 387 (426)
Q Consensus 343 er~~Il~~~l~~~~~~~~v~l~~la~-----------~t-----~g~sg~di~~l~~~A~~ 387 (426)
...+ ..+-..++.. ...+|+ .. ..|.-+.|+.++..|+.
T Consensus 171 ~I~e---i~L~s~GF~~---a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~ 225 (231)
T PF12774_consen 171 LIAE---ILLLSQGFKD---AKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGS 225 (231)
T ss_dssp HHHH---HHHHCCCTSS---HHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHcCchh---HHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHH
Confidence 5554 4444444331 122221 11 23555777777777664
No 247
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.61 E-value=6.6e-08 Score=100.52 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=107.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc--CCcEEEEecchhhhhhhcc-------------hHHHHHHHHHHHHcCCCEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKYVGE-------------GARMVRELFQMARSKKACIV 265 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l--~~~~i~v~~~~l~~~~~g~-------------~~~~v~~lf~~a~~~~p~Il 265 (426)
..-.+|+.|.|||||-.++|++.... ..+|+.++|..+-...+++ ..+-.+..++.|.. ..+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---Gtl 411 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTL 411 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---Ccc
Confidence 34579999999999999999999866 5789999997654432211 11112223333333 389
Q ss_pred EEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCccccCCCCcce-------E
Q 014332 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMATNRPDTLDPALLRPGRLDR-------K 333 (426)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~-------~ 333 (426)
|+|||..| .-..|..|++.|++-. +-...-.|.||+||++.- ..+.+.|||-. .
T Consensus 412 FldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 412 FLDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred HHHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcC
Confidence 99999998 7889999999998742 222334689999999751 22334455532 4
Q ss_pred EEecCCCHHHHHH---HHHHHHhcCC-CCCCccHHHHHHh----CCCCcHHHHHHHHHHHHHHH
Q 014332 334 VEFGLPDLESRTQ---IFKIHTRTMN-CERDIRFELLARL----CPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 334 i~~~~P~~~er~~---Il~~~l~~~~-~~~~v~l~~la~~----t~g~sg~di~~l~~~A~~~A 389 (426)
+.+.+|...+|.+ .+..++.+.+ ..-.++-+.++.+ -+| +-+++.+++..++..+
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Confidence 5666677776654 3433333322 2123343444433 344 4468888887776554
No 248
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.60 E-value=1.2e-06 Score=91.51 Aligned_cols=198 Identities=22% Similarity=0.226 Sum_probs=113.6
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEE-ecchhhhh--hhcchHHHHHHHHHHH---HcCCCEEEEEeCCCcccCC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRV-IGSELVQK--YVGEGARMVRELFQMA---RSKKACIVFFDEVDAIGGA 276 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v-~~~~l~~~--~~g~~~~~v~~lf~~a---~~~~p~Il~iDEiD~l~~~ 276 (426)
-+|||+|.||||||.+.+.+++-+..-.+.- .++.-+.. |+... ...+++.-.. -.....|.+|||+|++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd-~dtkqlVLesGALVLSD~GiCCIDEFDKM--- 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD-PDTRQLVLESGALVLSDNGICCIDEFDKM--- 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec-CccceeeeecCcEEEcCCceEEchhhhhh---
Confidence 4699999999999999999998664332211 11111000 00000 0001111000 0123358999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCC-------------CCCCccccCCCCcceEE-
Q 014332 277 RFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPGRLDRKV- 334 (426)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-------------~~ld~al~r~gRf~~~i- 334 (426)
+...+..|.+.+++=. |+ .-+.+.-|||++|.. =.|+|.|++ |||.++
T Consensus 539 --------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyl 608 (804)
T KOG0478|consen 539 --------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFL 608 (804)
T ss_pred --------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEE
Confidence 4556677778777621 11 123467799999952 257899999 999765
Q ss_pred EecCCCHHHHHHHHHHH----HhcCC----------------------CCCCcc---HHHH-H----HhC----CC---C
Q 014332 335 EFGLPDLESRTQIFKIH----TRTMN----------------------CERDIR---FELL-A----RLC----PN---S 373 (426)
Q Consensus 335 ~~~~P~~~er~~Il~~~----l~~~~----------------------~~~~v~---l~~l-a----~~t----~g---~ 373 (426)
-+..||+..-+.|-.+. ...-. ..+.+. ...+ + .+. .| .
T Consensus 609 llD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~ita 688 (804)
T KOG0478|consen 609 LLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITA 688 (804)
T ss_pred EecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccch
Confidence 45567766333332222 11000 001110 0011 0 000 12 3
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 014332 374 TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 374 sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~ 414 (426)
+++++..|.+.+...|..+....+...|+.+|+.-......
T Consensus 689 t~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL~ 729 (804)
T KOG0478|consen 689 TPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREALK 729 (804)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhc
Confidence 56889999998888888888899999999999876655543
No 249
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=2.1e-07 Score=79.18 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=48.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc--------CCcEEEEecchhhhh--h------------h--cchHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIGSELVQK--Y------------V--GEGARMVRELFQM 256 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l--------~~~~i~v~~~~l~~~--~------------~--g~~~~~v~~lf~~ 256 (426)
..+.++++||||+|||++++.++..+ ..+++.++++...+. + . .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35679999999999999999999987 677888877654311 0 1 1123344455555
Q ss_pred HHcCCCEEEEEeCCCcc
Q 014332 257 ARSKKACIVFFDEVDAI 273 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l 273 (426)
.......+|+|||+|.+
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 55565569999999997
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.58 E-value=8.8e-08 Score=92.62 Aligned_cols=140 Identities=21% Similarity=0.316 Sum_probs=79.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCc---EEEEecchhhhhhhcchHHHHHHHHHHH-----------HcCCCEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQKYVGEGARMVRELFQMA-----------RSKKACIVF 266 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~---~i~v~~~~l~~~~~g~~~~~v~~lf~~a-----------~~~~p~Il~ 266 (426)
..+++||+||+|||||++++.+-..+... ...++.+.. .+...+..+.+.. ..+...|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 46789999999999999999988766432 223333322 1222232222211 113346999
Q ss_pred EeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-------CCCCeEEEEEeCCC---CCCCccccCCCCcceEEEe
Q 014332 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-------ARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEF 336 (426)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-------~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~ 336 (426)
|||++.-.... -+.......|.|+++.-.-++ .-.++.+|+|++.. ..+++.++| .| ..+.+
T Consensus 106 iDDlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp EETTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred ecccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 99998764322 112223344555555421111 12368889998864 246778887 66 58999
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 014332 337 GLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 337 ~~P~~~er~~Il~~~l~~ 354 (426)
+.|+.+....|+...+..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999988888776653
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.57 E-value=1.4e-06 Score=100.21 Aligned_cols=178 Identities=21% Similarity=0.290 Sum_probs=104.1
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE---EEEecchh-
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF---IRVIGSEL- 238 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~---i~v~~~~l- 238 (426)
+...+++++|.+..++++...+.. .....+-+-|+||+|+||||||+++++.+...| +.++...+
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 445678899999999999988753 334567799999999999999999998764332 11111000
Q ss_pred --hhhhh-----------cchHHHHHH-------------HHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHH
Q 014332 239 --VQKYV-----------GEGARMVRE-------------LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (426)
Q Consensus 239 --~~~~~-----------g~~~~~v~~-------------lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (426)
...+. ......+.. ..+.....++.+|+||+++.. .....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L 314 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDAL 314 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHH
Confidence 00000 000001111 111222355679999998643 122222
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCcc----HHHHHH
Q 014332 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR----FELLAR 368 (426)
Q Consensus 293 ~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~----l~~la~ 368 (426)
....+.+ ..+..||+||+.... .+....++.++++.|+.++..++|..++....... -+ ...+++
T Consensus 315 ---~~~~~~~--~~GsrIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 315 ---AGQTQWF--GSGSRIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred ---HhhCccC--CCCcEEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 1222212 234567778875433 22224667899999999999999998875433221 12 244677
Q ss_pred hCCCCcH
Q 014332 369 LCPNSTG 375 (426)
Q Consensus 369 ~t~g~sg 375 (426)
.+.|..-
T Consensus 384 ~c~GLPL 390 (1153)
T PLN03210 384 RAGNLPL 390 (1153)
T ss_pred HhCCCcH
Confidence 8877664
No 252
>PF05729 NACHT: NACHT domain
Probab=98.53 E-value=1.8e-06 Score=76.12 Aligned_cols=140 Identities=15% Similarity=0.197 Sum_probs=77.7
Q ss_pred cceEecCCCChHHHHHHHHHHhcC---------CcEEEEecchhhhh------------hhcchHHHHHH-HHHHHHcCC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGSELVQK------------YVGEGARMVRE-LFQMARSKK 261 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~---------~~~i~v~~~~l~~~------------~~g~~~~~v~~-lf~~a~~~~ 261 (426)
-++|+|+||+|||++++.++..+. ...+.+.+...... ........... +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998651 11223333322211 01111111111 122334456
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCccccCCCCcceEEEecCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT--LDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~--ld~al~r~gRf~~~i~~~~P 339 (426)
..+|+||.+|.+...... .........+.+++.. ....++.+|.+++.... +...+.. ...+.++..
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 679999999999542210 0011222333344433 22446667777654322 2222222 157889999
Q ss_pred CHHHHHHHHHHHHhc
Q 014332 340 DLESRTQIFKIHTRT 354 (426)
Q Consensus 340 ~~~er~~Il~~~l~~ 354 (426)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.51 E-value=5.9e-07 Score=78.71 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=66.1
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh------------------------hcchHHHHHHHHHHH
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------------------------VGEGARMVRELFQMA 257 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~------------------------~g~~~~~v~~lf~~a 257 (426)
++|+||||+|||+++..++... +.+.+.++........ ........+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876 4566666554332211 000111222334556
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
....|.+++|||+..+.........+.+....+.+..++.... ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6778889999999988543211001123344455555655543 34677777776654
No 254
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.51 E-value=2.9e-06 Score=88.09 Aligned_cols=196 Identities=21% Similarity=0.177 Sum_probs=117.3
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHH--HHH---HH---HcCCCEEEEEeCCCcc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRE--LFQ---MA---RSKKACIVFFDEVDAI 273 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~--lf~---~a---~~~~p~Il~iDEiD~l 273 (426)
.-+|++.|.|||||+.+.+++++-+....+. .+..- ...|-+...+++ -++ .| .-....|-+|||+|++
T Consensus 378 Dinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKM 454 (764)
T KOG0480|consen 378 DINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKM 454 (764)
T ss_pred CceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--ccccceEEEEecCCCCceeeecCcEEEccCceEEechhccc
Confidence 4469999999999999999999866443332 11100 000111111100 000 00 0122349999999999
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCC-------------CCCCccccCCCCcce
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPGRLDR 332 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-------------~~ld~al~r~gRf~~ 332 (426)
+..-|.++.+.+++=. |+ .-+.+..||||+|+. =.+++++++ |||.
T Consensus 455 -----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL 521 (764)
T KOG0480|consen 455 -----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDL 521 (764)
T ss_pred -----------ChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcE
Confidence 4545667777776521 11 123356688899863 257789999 9997
Q ss_pred E-EEecCCCHHHHHHHHHHHHhcCCC-CC------CccH----------------------HHHHH--------h-----
Q 014332 333 K-VEFGLPDLESRTQIFKIHTRTMNC-ER------DIRF----------------------ELLAR--------L----- 369 (426)
Q Consensus 333 ~-i~~~~P~~~er~~Il~~~l~~~~~-~~------~v~l----------------------~~la~--------~----- 369 (426)
. |-+.-|++..-..|-++.+..... +. .... +.+.+ .
T Consensus 522 ~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~ 601 (764)
T KOG0480|consen 522 FFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNN 601 (764)
T ss_pred EEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccC
Confidence 4 455668877666555544432111 00 0000 01110 1
Q ss_pred --CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 014332 370 --CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 370 --t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~ 413 (426)
+-+.|.++|.++++-+...|.-.-+..||.+|+.+|++-..++.
T Consensus 602 ~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 602 RSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 12456799999999998888888889999999999998766544
No 255
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.51 E-value=1.4e-07 Score=93.78 Aligned_cols=189 Identities=25% Similarity=0.282 Sum_probs=106.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch-----h---------hhhhhcchHHHHHHHHHHHHcCCCEEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE-----L---------VQKYVGEGARMVRELFQMARSKKACIVFF 267 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~-----l---------~~~~~g~~~~~v~~lf~~a~~~~p~Il~i 267 (426)
.-++||.|.||||||.|.+.+++-..... ++++.. | ...|+-+.. .+-.| ..+|++|
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaG-----alvla---d~GiccI 127 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAG-----ALVLA---DGGICCI 127 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE------HHHHC---TTSEEEE
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCC-----chhcc---cCceeee
Confidence 44899999999999999998876543332 333222 1 111111111 12222 2349999
Q ss_pred eCCCcccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCccccC
Q 014332 268 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLR 326 (426)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~~-------------~ld~al~r 326 (426)
||+|.+ +......|.+.+++-. |+ .-+.++.|++++|... .+++.|++
T Consensus 128 De~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS 196 (331)
T PF00493_consen 128 DEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS 196 (331)
T ss_dssp CTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred cccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence 999998 5556777777777621 11 1134678999999754 47789999
Q ss_pred CCCcceEEEe-cCCCHHHHHHHHHHHHhcCCCCC------------Ccc------HHHHHH-------------------
Q 014332 327 PGRLDRKVEF-GLPDLESRTQIFKIHTRTMNCER------------DIR------FELLAR------------------- 368 (426)
Q Consensus 327 ~gRf~~~i~~-~~P~~~er~~Il~~~l~~~~~~~------------~v~------l~~la~------------------- 368 (426)
|||..+.+ ..|+.+.-..+.+..++...... .++ +-..++
T Consensus 197 --RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Y 274 (331)
T PF00493_consen 197 --RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYY 274 (331)
T ss_dssp --C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHH
T ss_pred --hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence 99988765 45676655555554443221110 011 011111
Q ss_pred ----h-------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 369 ----L-------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 369 ----~-------t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
. ....+.+.+..+++-|...|..+.+..|+.+|+..|+.=+...
T Consensus 275 v~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~S 329 (331)
T PF00493_consen 275 VELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEES 329 (331)
T ss_dssp CCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHHH
T ss_pred HHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHhh
Confidence 0 0123557788999999999988899999999999999766443
No 256
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.50 E-value=4.8e-07 Score=90.78 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=61.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCC-cEEEEecchhhhhhhcch------HHHHHHHHHHHHcCCCEEEEEeCCC
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGSELVQKYVGEG------ARMVRELFQMARSKKACIVFFDEVD 271 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~-~~i~v~~~~l~~~~~g~~------~~~v~~lf~~a~~~~p~Il~iDEiD 271 (426)
..+|+|++||||+|+|||+|+-.+.+.+.. .-.++.-.+++......- ..-+..+-+... ....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457999999999999999999999998754 222222223322211110 001112222222 223499999998
Q ss_pred cccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.- +..-...+..|+..+- ..++++|+|+|++
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 74 3333444556666553 4578899999974
No 257
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.48 E-value=9.9e-06 Score=78.50 Aligned_cols=168 Identities=23% Similarity=0.264 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHh--cCCc---EEEEecch------hhhhh
Q 014332 174 KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR--TDAC---FIRVIGSE------LVQKY 242 (426)
Q Consensus 174 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~--l~~~---~i~v~~~~------l~~~~ 242 (426)
+..+++|.+.+.. .-...+.|.|+|++|+|||+||+.+++. .... .+.++.+. +....
T Consensus 2 e~~~~~l~~~L~~-----------~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLD-----------NSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHT-----------TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhC-----------CCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 4566777776654 1145677999999999999999999987 3322 12232221 11110
Q ss_pred ---hc----------chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 243 ---VG----------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 243 ---~g----------~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
.+ ........+.+ .....+++|+||+++.. . .+..+...+.. ...+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~--~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDE-------------E---DLEELREPLPS--FSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SH-------------H---HH-------HC--HHSS-E
T ss_pred cccccccccccccccccccccccchh-hhccccceeeeeeeccc-------------c---ccccccccccc--cccccc
Confidence 11 11223333333 33445899999998764 1 12122221111 123567
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCC---C-CCccHHHHHHhCCCCcH
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC---E-RDIRFELLARLCPNSTG 375 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~---~-~~v~l~~la~~t~g~sg 375 (426)
||+||....... ... .-...++++..+.++-.++|..+...... . ..-....++..|.|..-
T Consensus 132 ilvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 132 ILVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp EEEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred cccccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888887643211 111 11468999999999999999988765441 1 12235788999977543
No 258
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=5.7e-06 Score=80.38 Aligned_cols=143 Identities=14% Similarity=0.184 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEE-------EE-e--------cc
Q 014332 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI-------RV-I--------GS 236 (426)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i-------~v-~--------~~ 236 (426)
+..+++.++.++.. -+.+..+||+|| +||+++|+++|..+-+.-- .. + -+
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45667777777764 245778999996 6899999999986633210 00 0 01
Q ss_pred hhhhhh-hcc--hHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 237 ELVQKY-VGE--GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 237 ~l~~~~-~g~--~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
++.--. .|. .-..+|++...+. .....|++||++|.+ +....+.|+..|++ ++.+++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCeE
Confidence 110000 011 2344555554443 344579999999999 56666777766664 667799
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~ 349 (426)
+|.+|+.++.+-|.+++ |+ ..+.|+. +.+...+++.
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 99999999999999999 88 5778865 5555445543
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=3.9e-06 Score=79.78 Aligned_cols=121 Identities=7% Similarity=0.040 Sum_probs=81.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec--------------chhhhhh-h--cchHHHHHHHHHHHH----
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--------------SELVQKY-V--GEGARMVRELFQMAR---- 258 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~--------------~~l~~~~-~--g~~~~~v~~lf~~a~---- 258 (426)
.+|..+||+||+|+||..+|.++|..+-+.--.-.| +++.--+ . .-+...++++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999876332100001 0110000 0 012233444443322
Q ss_pred c-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec
Q 014332 259 S-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 259 ~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~ 337 (426)
. ....|++|+++|.+ +.+....|+-+|++ ++.++++|..|+.++.+-|.+++ |+. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 1 33579999999999 66667777777764 77889999999999999999999 874 56676
Q ss_pred CC
Q 014332 338 LP 339 (426)
Q Consensus 338 ~P 339 (426)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5.3e-06 Score=81.14 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-------------EEEEecchhhhh
Q 014332 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------FIRVIGSELVQK 241 (426)
Q Consensus 175 ~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------------~i~v~~~~l~~~ 241 (426)
.+++.++..+.. -+-+...||+|+.|.||+.+|+.+++.+-|. ++.++.. ..
T Consensus 3 ~~~~~l~~~i~~------------~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~ 67 (299)
T PRK07132 3 NWIKFLDNSATQ------------NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK 67 (299)
T ss_pred hHHHHHHHHHHh------------CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC
Confidence 345666666643 1345678899999999999999999987321 2222200 00
Q ss_pred hhcchHHHHHHHHHHHHc-----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 242 YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
. -+-..++.+.+.... ....|++||++|.+ +...+..|+..|++ ++.++++|.+|+.
T Consensus 68 ~--i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~ 129 (299)
T PRK07132 68 D--LSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKN 129 (299)
T ss_pred c--CCHHHHHHHHHHhccCCcccCCceEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCC
Confidence 0 122345555554421 35579999999998 55566666666664 5678888888888
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 014332 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (426)
Q Consensus 317 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~ 350 (426)
+..+-+.+++ |+ ..++|++|+.++..+.+..
T Consensus 130 ~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 130 INKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred hHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 8999999998 87 5899999998888776654
No 261
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.43 E-value=3.9e-06 Score=80.31 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=81.0
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcc----
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE---- 245 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~---- 245 (426)
|.|+.-+++.+..++...+.++. -+.|-.+=|||++||||.++++.||+.+-..- -.|.++..|++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCC
Confidence 78888888888888865433221 12344567889999999999999999652111 123333333222
Q ss_pred --------hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH---hcCCCCCCCeEEEEEe
Q 014332 246 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ---LDGFDARGNIKVLMAT 314 (426)
Q Consensus 246 --------~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~---l~~~~~~~~v~vI~at 314 (426)
..+.-+.+-..+..++.++.++||+|.| .+.+...+--+|+. .+|.+. .+.++|.-+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~f-rkaIFIfLS 222 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDF-RKAIFIFLS 222 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccc-cceEEEEEc
Confidence 1222334455566778889999999999 67777788777764 333333 345667766
Q ss_pred CC
Q 014332 315 NR 316 (426)
Q Consensus 315 n~ 316 (426)
|.
T Consensus 223 N~ 224 (344)
T KOG2170|consen 223 NA 224 (344)
T ss_pred CC
Confidence 65
No 262
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.43 E-value=1.2e-06 Score=95.99 Aligned_cols=212 Identities=17% Similarity=0.200 Sum_probs=137.3
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCcc-ChhHHHhhCCCCCC--cceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML-HPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~-~~~~~~~~g~~~~~--~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..|.+++.+....++.|.......+.+++...-. .+..|...+..... .++++||||+|||+.+.++|.+++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 4678888888888888888877788887765311 22233332222222 37999999999999999999999999999
Q ss_pred Eecchhhhhhhc-----c--hHHHHHHHH---HH--HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 014332 233 VIGSELVQKYVG-----E--GARMVRELF---QM--ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (426)
Q Consensus 233 v~~~~l~~~~~g-----~--~~~~v~~lf---~~--a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (426)
.+.++..+++.. + +...+...| .. .....-.||++||+|.+.+ .++.....+..++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~k-- 457 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKK-- 457 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHh--
Confidence 999877665421 1 111222222 00 0111123999999999964 144455555555552
Q ss_pred CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHH
Q 014332 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIR 379 (426)
Q Consensus 301 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~ 379 (426)
....+|+++|..+......+. |....+.|+.|+...+..-+...+....+. .+-.++.+...+ ++||+
T Consensus 458 -----s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 458 -----SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred -----ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 344588899887766654444 555789999999998887666666544333 222345555554 56898
Q ss_pred HHHHHHHHH
Q 014332 380 SVCTEAGMF 388 (426)
Q Consensus 380 ~l~~~A~~~ 388 (426)
+++..-.+.
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 887776665
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.36 E-value=1.4e-06 Score=80.70 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh-----------------------cchHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-----------------------GEGARMVR 251 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~-----------------------g~~~~~v~ 251 (426)
|+....-++++||||+|||+++..++... +...++++..++....+ .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77788889999999999999999988643 56677777754211100 00111233
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.+...+....+++|+||-+..+......+. .....+.+..++..+..+....++.+|++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~---~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDD---RISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCc---cHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 444445556789999999998853211111 1122223333333333333355677777654
No 264
>PF14516 AAA_35: AAA-like domain
Probab=98.33 E-value=6.6e-05 Score=74.78 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=99.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc-------------------------------
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE------------------------------- 245 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~------------------------------- 245 (426)
+++.-+.++||..+|||++...+.+.+ +...+.+++..+-+.....
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 357789999999999999999988765 6777777766542211000
Q ss_pred hHHHHHHHHHHH---HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC----CCCCCCeEEEEEeCCC-
Q 014332 246 GARMVRELFQMA---RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG----FDARGNIKVLMATNRP- 317 (426)
Q Consensus 246 ~~~~v~~lf~~a---~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~----~~~~~~v~vI~atn~~- 317 (426)
+.......|+.. ....|-||+|||+|.+.. .+.....++.+|..... .....++.+|++....
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~---------~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE---------YPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc---------CcchHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 001112223321 225678999999999964 22333344444444322 1122345555544332
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHH
Q 014332 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTE 384 (426)
Q Consensus 318 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~ 384 (426)
......-.+|--+...+.++.-+.++...+++.|-.. .... .++.+-..+.|.. .=++.+|..
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGhP-~Lv~~~~~~ 242 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGHP-YLVQKACYL 242 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCCH-HHHHHHHHH
Confidence 2222222344455668888888999999988877433 2222 2778888888853 344444443
No 265
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.29 E-value=5.4e-06 Score=85.75 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=58.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh------cc--------hHHHHHHHHHHHHcC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------GE--------GARMVRELFQMARSK 260 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~------g~--------~~~~v~~lf~~a~~~ 260 (426)
|+.+...++|+||||+|||+|+..+|... +..+++++..+-..... |. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 77888889999999999999999998865 56778887765433211 11 112244566666777
Q ss_pred CCEEEEEeCCCcccCCc
Q 014332 261 KACIVFFDEVDAIGGAR 277 (426)
Q Consensus 261 ~p~Il~iDEiD~l~~~r 277 (426)
.|.+|+||.+..+....
T Consensus 156 ~~~lVVIDSIq~l~~~~ 172 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPE 172 (446)
T ss_pred CCCEEEEechhhhcccc
Confidence 88999999999986543
No 266
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.28 E-value=1.2e-06 Score=78.81 Aligned_cols=59 Identities=29% Similarity=0.482 Sum_probs=38.5
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---EEEEecchh
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSEL 238 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---~i~v~~~~l 238 (426)
++|.+++++++...+.. . ....++.++|+|++|+|||+++++++..+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A---------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T---------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 67999999999998842 1 22456889999999999999999998866332 666666554
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.28 E-value=2.5e-06 Score=70.61 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=20.8
Q ss_pred ceEecCCCChHHHHHHHHHHhcC
Q 014332 205 VLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~ 227 (426)
|+||||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 268
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.26 E-value=6.5e-06 Score=83.02 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=56.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh------hcc--------hHHHHHHHHHHHHcC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE--------GARMVRELFQMARSK 260 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~------~g~--------~~~~v~~lf~~a~~~ 260 (426)
|+.+..-++|+|+||+|||+|+..+|... +.+.+++++.+-.... +|. .+..+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67788889999999999999999998764 4567777765432221 110 112345566666777
Q ss_pred CCEEEEEeCCCcccCC
Q 014332 261 KACIVFFDEVDAIGGA 276 (426)
Q Consensus 261 ~p~Il~iDEiD~l~~~ 276 (426)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998643
No 269
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.26 E-value=3.2e-06 Score=82.69 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=61.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCcE-EEEecchhhhhh-------hcchHHHHHHHHHHHHcCCCEEEEEeCC
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACF-IRVIGSELVQKY-------VGEGARMVRELFQMARSKKACIVFFDEV 270 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~-i~v~~~~l~~~~-------~g~~~~~v~~lf~~a~~~~p~Il~iDEi 270 (426)
..+++|++|||+-|+|||+|.-.+.+.+...- .++.-..++... .|++.- +..+-... .....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP-LPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHH-HhcCCEEEeeee
Confidence 35789999999999999999999998764322 222222222211 122200 01111111 122349999999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCC
Q 014332 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTL 320 (426)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~l 320 (426)
..- +..-...+..|++.+- ..+|++++|+|. |+.|
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 763 3333445556776654 358899999996 3444
No 270
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.20 E-value=1.7e-05 Score=71.71 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=60.4
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh------hcc-----------------------hH-----
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE-----------------------GA----- 247 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~------~g~-----------------------~~----- 247 (426)
++++||||||||+++..++... |.+++.++..+-...+ .|- ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999887753 5666666543221110 000 00
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 248 ~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
.....+...+....|.+++||++..+... ........+..++..+.. .++.+|++++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 11233444455677889999999987531 113333444556555542 2556677776543
No 271
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.19 E-value=1.3e-05 Score=82.98 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=106.3
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHH-----HHHHHHHHH---cCCCEEEEEeCCCcccC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARM-----VRELFQMAR---SKKACIVFFDEVDAIGG 275 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~-----v~~lf~~a~---~~~p~Il~iDEiD~l~~ 275 (426)
+|||+|.|||||+.+.|.+++-....++..-... ..+|-+... .+++.-.+- .....|.+|||+|++..
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA---SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd 560 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA---SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND 560 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCc---cccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc
Confidence 5999999999999999999987655544321100 001110000 111111110 01224889999999943
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCC-----------C--CCCccccCCCCcceEE
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-----------D--TLDPALLRPGRLDRKV 334 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI~atn~~-----------~--~ld~al~r~gRf~~~i 334 (426)
.. ...+-+.+++-. |+ .-..++.||+|+|.. . .|...+++ |||...
T Consensus 561 qD-----------RtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLc 627 (854)
T KOG0477|consen 561 QD-----------RTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILC 627 (854)
T ss_pred cc-----------cchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hcceee
Confidence 21 111112222100 00 112467799999972 1 45567777 999766
Q ss_pred EecC---CCHHHHH--HHHHHHHhcCCCC--------------------------------------CCccHHHHHHh--
Q 014332 335 EFGL---PDLESRT--QIFKIHTRTMNCE--------------------------------------RDIRFELLARL-- 369 (426)
Q Consensus 335 ~~~~---P~~~er~--~Il~~~l~~~~~~--------------------------------------~~v~l~~la~~-- 369 (426)
.+.. |-.+++. .++..|.+...-. ...|.+.+++.
T Consensus 628 VvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya 707 (854)
T KOG0477|consen 628 VVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYA 707 (854)
T ss_pred eeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 6654 4333333 3444454332211 11222222221
Q ss_pred -------CCC---CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 370 -------CPN---STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 370 -------t~g---~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
..| .+-+.|..+++-+...|....+..++.+|+..|++-++.+
T Consensus 708 ~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 708 DLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 112 1458888999888888888888999999999999766543
No 272
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.19 E-value=1.3e-05 Score=77.83 Aligned_cols=162 Identities=19% Similarity=0.311 Sum_probs=103.9
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHH---hcCCcEEEEecchhhhh---
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELVQK--- 241 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~---~l~~~~i~v~~~~l~~~--- 241 (426)
..+.|..+..+.+.+++.....+ ....+|++.||.|+|||++...... +.|-.|+.+.....+..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 34788888889998888753322 3467899999999999998766544 45666665543322211
Q ss_pred ------------------hhcchHHHHHHHHHHHHc-----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 014332 242 ------------------YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (426)
Q Consensus 242 ------------------~~g~~~~~v~~lf~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (426)
..|.....+..+.+..+. ..+-|.++||||.+++ ..-|-.+..+++.
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfDi 164 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHHH
Confidence 122222333333333322 2334556789999864 3456666677765
Q ss_pred hcCCCCCCCeEEEEEeCCCCCC---CccccCCCCcceE-EEecCC-CHHHHHHHHHHHH
Q 014332 299 LDGFDARGNIKVLMATNRPDTL---DPALLRPGRLDRK-VEFGLP-DLESRTQIFKIHT 352 (426)
Q Consensus 299 l~~~~~~~~v~vI~atn~~~~l---d~al~r~gRf~~~-i~~~~P-~~~er~~Il~~~l 352 (426)
-. ..+.++.||+.|.+.+.+ ...+.+ ||... |.++++ +..+-.++++..+
T Consensus 165 sq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 165 SQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred Hh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 44 346689999999887554 467777 99764 555553 6788888888776
No 273
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.16 E-value=9.2e-06 Score=80.01 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=71.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----------------hcchHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----------------VGEGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~----------------~g~~~~~v~~lf~~a~ 258 (426)
|+++.+.++|+||||||||+||-.++... +.+++.++..+..... ....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67888889999999999999988877643 6677777664432210 1112333333444456
Q ss_pred cCCCEEEEEeCCCcccCCccCCCCCCC--hHHH-HHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 259 SKKACIVFFDEVDAIGGARFDDGVGGD--NEVQ-RTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~--~~~~-~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
...+.+|+||-+.++.+...-.+..++ ...+ +.+.+++..+...-...++.+|++...
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 678899999999998764211111111 1122 333355554444445667777777543
No 274
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.15 E-value=1e-05 Score=75.92 Aligned_cols=117 Identities=18% Similarity=0.344 Sum_probs=65.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh----hhhhcc-------------------hHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVGE-------------------GARMVR 251 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~----~~~~g~-------------------~~~~v~ 251 (426)
|+....-++++||||+|||+++..+|... +...++++...+. ....+. ....+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 77778889999999999999999999744 6677777776221 111110 011122
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.+..... ..+.+|+||-+.++......+ ........+.+.+++..+..+....++.+|++...
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~ 161 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQV 161 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccc
Confidence 2222222 578899999999886432111 01122223334443333332223456777776543
No 275
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.15 E-value=1.1e-05 Score=79.57 Aligned_cols=118 Identities=21% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEecchhhhh-h---------------hcchHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK-Y---------------VGEGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~~~l~~~-~---------------~g~~~~~v~~lf~~a~ 258 (426)
|++..+-+.++||||||||+||-.++.. .+...++++...-... + ....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 6777888999999999999999998754 3677777776442211 0 1112233333334456
Q ss_pred cCCCEEEEEeCCCcccCCccCCCCCCCh--HH-HHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 259 SKKACIVFFDEVDAIGGARFDDGVGGDN--EV-QRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~--~~-~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
...+.+|+||-+-++.+...-.+..++. .. .+.+.+.+..+...-...++.+|++..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6788999999999997632111111111 12 233445555544444466777777654
No 276
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.14 E-value=2e-05 Score=78.16 Aligned_cols=156 Identities=21% Similarity=0.291 Sum_probs=88.0
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcE--EEEecchhhhhhhcchHHHHHHHHHH---------------------
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSELVQKYVGEGARMVRELFQM--------------------- 256 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~--i~v~~~~l~~~~~g~~~~~v~~lf~~--------------------- 256 (426)
.+|+|++|||.-|||||+|.-.+...+.... -++...+++.. ..+..+++-+.
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~----VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA 187 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLS----VHKRMHELKQEQGAEKPGYAKSWEIDPLPVVA 187 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHH----HHHHHHHHHHhccccCccccccccCCccHHHH
Confidence 4699999999999999999999886543211 01111112111 11111111110
Q ss_pred -HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CCCCc-cccCCCCcceE
Q 014332 257 -ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DTLDP-ALLRPGRLDRK 333 (426)
Q Consensus 257 -a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-~~ld~-al~r~gRf~~~ 333 (426)
--....++|++||+..- +-.-.-.|.+|+..+- ..+|++++|+||. +.|-. .+.| .
T Consensus 188 ~eIa~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQR------~ 246 (467)
T KOG2383|consen 188 DEIAEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQR------E 246 (467)
T ss_pred HHHhhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchhh------h
Confidence 00122469999999764 3333344556666653 3488999999984 44432 3332 2
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCC-C--C-cHHHHHHHHHHHH
Q 014332 334 VEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCP-N--S-TGADIRSVCTEAG 386 (426)
Q Consensus 334 i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~-g--~-sg~di~~l~~~A~ 386 (426)
..+| -..+|+.++.-..+.+.+|+...+.... + | +..|+..++.+-.
T Consensus 247 ~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 247 NFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 2222 3467788888888888888884433221 1 1 2236777776655
No 277
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.13 E-value=0.00017 Score=73.67 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=82.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r 277 (426)
...++ -++++||.+||||++++.+........+.++..++......- ......+..+.....+.||||||+.+
T Consensus 34 ~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---- 106 (398)
T COG1373 34 DLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---- 106 (398)
T ss_pred ccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----
Confidence 33444 899999999999999999988876556666666554432211 11112222222224469999999997
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHH-----------
Q 014332 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ----------- 346 (426)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~----------- 346 (426)
++.++.+..+.+... . ++++.+++........+-.-+||. ..+++.+.+..|...
T Consensus 107 --------~~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~ 172 (398)
T COG1373 107 --------PDWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKL 172 (398)
T ss_pred --------hhHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHH
Confidence 456666666655321 1 343333333222222222235785 688888889888865
Q ss_pred --HHHHHHhcCCC
Q 014332 347 --IFKIHTRTMNC 357 (426)
Q Consensus 347 --Il~~~l~~~~~ 357 (426)
.+..++..-++
T Consensus 173 ~~~f~~Yl~~GGf 185 (398)
T COG1373 173 ELLFEKYLETGGF 185 (398)
T ss_pred HHHHHHHHHhCCC
Confidence 46666655443
No 278
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.09 E-value=1.8e-05 Score=80.35 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=122.7
Q ss_pred cccCcHHHHHHHHHHHhcCccC-hhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchH
Q 014332 169 DVGGCKEQIEKMREVVELPMLH-PEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGA 247 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~-~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~ 247 (426)
+|-|.+++++.|.-++.....+ +. ....+.-.-+|+|.|.||+.||.|.+++.+-.....+..-. -+.-+|-++
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~--dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGr---GSSGVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPG--DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGR---GSSGVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCC--CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCC---CCCccccch
Confidence 3667777777666555431110 00 00011222359999999999999999999865433332211 011122222
Q ss_pred HHHHHHH-HH-HH------cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEE
Q 014332 248 RMVRELF-QM-AR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVL 311 (426)
Q Consensus 248 ~~v~~lf-~~-a~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI 311 (426)
...++-. .. .. -....|.+|||+|++.. .-.-.+-+.+++- -|+ .-+.++.|+
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e-----------~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE-----------SDRTAIHEVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhh-----------hhhHHHHHHHHhhhhhhhhhccccchhhhHHhh
Confidence 2222100 00 00 01234899999999932 2222333444331 111 123457788
Q ss_pred EEeCCC-------------CCCCccccCCCCcceEEE-ecCCCHHHHHHHHHHHHh--cCCCCCC-----ccHHHH----
Q 014332 312 MATNRP-------------DTLDPALLRPGRLDRKVE-FGLPDLESRTQIFKIHTR--TMNCERD-----IRFELL---- 366 (426)
Q Consensus 312 ~atn~~-------------~~ld~al~r~gRf~~~i~-~~~P~~~er~~Il~~~l~--~~~~~~~-----v~l~~l---- 366 (426)
+|+|+. =.|++||++ |||..+- ...|+.+.-..+.++.+. ..+..+. ++.+.+
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI 564 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYI 564 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHH
Confidence 998863 257899999 9997443 445776655554443321 1111111 222111
Q ss_pred --HH----------------------------hCC-CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 367 --AR----------------------------LCP-NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 367 --a~----------------------------~t~-g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
++ .-. -.|++-|-.+++.+...|..+-...|..+|+.+|++-+.
T Consensus 565 ~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 565 SLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 11 001 226688888899888888888889999999999998653
No 279
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.09 E-value=5.8e-05 Score=76.34 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=40.1
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
....++++.||+|||||+++.+++... | -.++.+.|+.... . ..+. .-..+.+|+|||+..+-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHh--hhccCCEEEEEcCCCCc
Confidence 456789999999999999999988762 3 2223333322211 0 1111 12345699999999863
No 280
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=4.8e-05 Score=66.67 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+..++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.07 E-value=3.5e-05 Score=71.87 Aligned_cols=118 Identities=23% Similarity=0.291 Sum_probs=66.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh----hhhc-------------------chHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KYVG-------------------EGARMVR 251 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~----~~~g-------------------~~~~~v~ 251 (426)
|+.+..-++++|+||+|||+++..+|.+. +.+.++++...... ...+ +....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 67778889999999999999999999765 55666675532111 1000 0011122
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.+..... ..+++|+||-+..+......+. .......+.+..++..+..+....++.||+++...
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~ 158 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVY 158 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCE
Confidence 2333233 2378999999998853211111 11122333444444333333345577788776543
No 282
>PRK08118 topology modulation protein; Reviewed
Probab=98.05 E-value=2e-05 Score=70.69 Aligned_cols=101 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~ 283 (426)
.|++.||||+||||+|+.+++.++.+++.++.--. .| .....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~----------------------~~------~w~~~---------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW----------------------KP------NWEGV---------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc----------------------cc------CCcCC----------
Confidence 58999999999999999999999999887763210 00 00000
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 284 ~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
...+....+.+++.. .+ +|+-.|....++..+ . ++|..|.+..|...-...+++..+..
T Consensus 45 ~~~~~~~~~~~~~~~-------~~--wVidG~~~~~~~~~l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 45 PKEEQITVQNELVKE-------DE--WIIDGNYGGTMDIRL-N--AADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred CHHHHHHHHHHHhcC-------CC--EEEeCCcchHHHHHH-H--hCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 011222222232221 12 555666665555433 2 68899999999888888888887753
No 283
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.04 E-value=5.1e-05 Score=71.64 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=64.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh------hc------------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VG------------------------ 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~------~g------------------------ 244 (426)
|+++...++++||||||||+++..++... +...+++...+-...+ .|
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56777889999999999999976555433 5556666543211110 00
Q ss_pred -chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 245 -EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 245 -~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+....+..+...+....|.++++|++-.+... ..++...+.+.+++..+. .. +..++++++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~---~~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRIS---SL-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHH---hC-CCEEEEEeccc
Confidence 01233344555555567889999999886421 113333455666666553 12 33566666643
No 284
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.01 E-value=1.1e-05 Score=75.25 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch--h--------hhhhhcchHHHHHHHHHHHH--cCCCEEEEEeC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE--L--------VQKYVGEGARMVRELFQMAR--SKKACIVFFDE 269 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~--l--------~~~~~g~~~~~v~~lf~~a~--~~~p~Il~iDE 269 (426)
|..+||||+||+|||++|+.++.. .-++..+.+. + +..-...+...+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 567999999999999999999742 2233333311 0 00001112223333333332 24567999999
Q ss_pred CCcccC
Q 014332 270 VDAIGG 275 (426)
Q Consensus 270 iD~l~~ 275 (426)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998743
No 285
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.01 E-value=5.4e-05 Score=78.49 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=55.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh------cch--------HHHHHHHHHHHHcC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------GEG--------ARMVRELFQMARSK 260 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~------g~~--------~~~v~~lf~~a~~~ 260 (426)
|+.+..-++|+|+||+|||+|+..++... +.+.++++..+-..... |-. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 77888889999999999999999998754 45677777654432211 100 11234555666677
Q ss_pred CCEEEEEeCCCcccC
Q 014332 261 KACIVFFDEVDAIGG 275 (426)
Q Consensus 261 ~p~Il~iDEiD~l~~ 275 (426)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 889999999999854
No 286
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.00 E-value=0.00038 Score=68.73 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC---CCCC------------cc-
Q 014332 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP---DTLD------------PA- 323 (426)
Q Consensus 260 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~---~~ld------------~a- 323 (426)
..+-||||||+|++ +++....+++.+..+- ...++++|.+.++- ..+. ..
T Consensus 171 ~~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~---~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC-----------SPEEIVELLEAIKLLL---DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcC-----------CcHHHHHHHHHHHHhc---CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 44669999999999 4444455555555543 33788888888742 1111 11
Q ss_pred ccCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 014332 324 LLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM 355 (426)
Q Consensus 324 l~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~ 355 (426)
|-. -|+..+.+|.|+..+...++...+...
T Consensus 237 LeK--iiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 237 LEK--IIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred HHh--hcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 222 467789999999998888887776443
No 287
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.99 E-value=3.5e-05 Score=71.10 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=61.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh-----cCCcE-------------EEEecchhhh----hhhcchHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR-----TDACF-------------IRVIGSELVQ----KYVGEGARMVRELFQ 255 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~-----l~~~~-------------i~v~~~~l~~----~~~g~~~~~v~~lf~ 255 (426)
.+...+.++|+||+|+|||+++|.++.. .|.++ ..+...+-+. .+. .....+..+++
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~-~e~~~~~~iL~ 99 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFY-AELRRLKEIVE 99 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHH-HHHHHHHHHHH
Confidence 3445578999999999999999999853 34322 1111111000 111 11234566666
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~-~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.+....|.++++||.-+-. +..... .+..+++.+. ..+..+|++|+..+.+
T Consensus 100 ~~~~~~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~ 151 (199)
T cd03283 100 KAKKGEPVLFLLDEIFKGT----------NSRERQAASAAVLKFLK----NKNTIGIISTHDLELA 151 (199)
T ss_pred hccCCCCeEEEEecccCCC----------CHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHH
Confidence 6654578999999975421 333222 2334555543 1245688888876433
No 288
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=8.9e-05 Score=81.24 Aligned_cols=161 Identities=27% Similarity=0.342 Sum_probs=112.3
Q ss_pred ccccCc-HHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCcEEEEecc
Q 014332 168 NDVGGC-KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGS 236 (426)
Q Consensus 168 ~di~G~-~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~~i~v~~~ 236 (426)
+.++|. ++.++.+.+++.. +..++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 186 dPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 446665 8888888777754 344788999999999999999999864 4566777766
Q ss_pred hhhh--hhhcchHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014332 237 ELVQ--KYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (426)
Q Consensus 237 ~l~~--~~~g~~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 313 (426)
.++. ++.|+.+..+..+...+. ....-||||||++-+.+.... .+..+. ..+|..+- ..+.+.+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~----~nlLkp~L---~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDA----ANLLKPLL---ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHH----HHhhHHHH---hcCCeEEEec
Confidence 5544 567888999999999887 456679999999999764422 111112 22222221 2445889998
Q ss_pred eCC-----CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc
Q 014332 314 TNR-----PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 314 tn~-----~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
|.. .-.-+|++-+ ||+ .+.++.|+.+.-..||+.....
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 763 2345899999 996 6778889877766666654443
No 289
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.97 E-value=1.4e-05 Score=76.23 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=107.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHH------hcCCcEEEEecchhhhhhh-cchHHHHHHHHHH--------HHcCCC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVAN------RTDACFIRVIGSELVQKYV-GEGARMVRELFQM--------ARSKKA 262 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~------~l~~~~i~v~~~~l~~~~~-g~~~~~v~~lf~~--------a~~~~p 262 (426)
.+.....+||.||+|.||+.||+.+.. ++..+|+.++|..+..... ...-..+...|-- .+....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 445667899999999999999999975 5688999999988754310 0000111111211 122344
Q ss_pred EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCCCCeEEEEEeCCC-------CCCCccccCCCC
Q 014332 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARGNIKVLMATNRP-------DTLDPALLRPGR 329 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~~~v~vI~atn~~-------~~ld~al~r~gR 329 (426)
.++|+|||..++. +-|..++..+++-.-+ .-.+.+.+|+-|.+- ..+-..|.- |
T Consensus 284 gmlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a--r 350 (531)
T COG4650 284 GMLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA--R 350 (531)
T ss_pred ceEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH--h
Confidence 6999999999953 2356666666653221 112345566666431 111122222 3
Q ss_pred cceEEEecCCCHHHHHHHH--------HHHHhcCCCCCCccHH------HHHHhCC---CC--cHHHHHHHHHHHHHHHH
Q 014332 330 LDRKVEFGLPDLESRTQIF--------KIHTRTMNCERDIRFE------LLARLCP---NS--TGADIRSVCTEAGMFAI 390 (426)
Q Consensus 330 f~~~i~~~~P~~~er~~Il--------~~~l~~~~~~~~v~l~------~la~~t~---g~--sg~di~~l~~~A~~~A~ 390 (426)
+ ....|.+|...+|.+=+ ..|.+..+- .+.+. .++-.+. .+ +-+++.+-+++.+.+|
T Consensus 351 i-nlwtf~lpgl~qr~ediepnldyelerha~~~g~--~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla- 426 (531)
T COG4650 351 I-NLWTFTLPGLRQRQEDIEPNLDYELERHASLTGD--SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA- 426 (531)
T ss_pred h-heeeeeccccccCccccCCCccHHHHHHHHhhCc--eeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh-
Confidence 3 24567777777765522 222221111 11111 1111110 11 2256666666555444
Q ss_pred HHcCCCccHHHHHHHHHHHHhhcc
Q 014332 391 RARRKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 391 ~~~~~~It~ed~~~A~~~v~~~~~ 414 (426)
....||.+-++.-+.+......
T Consensus 427 --d~grit~~~ve~ei~rlr~~w~ 448 (531)
T COG4650 427 --DSGRITLDVVEDEINRLRYNWQ 448 (531)
T ss_pred --cCCceeHHHHHHHHHHHHHHhh
Confidence 6667888888888777665443
No 290
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.96 E-value=3e-05 Score=87.51 Aligned_cols=138 Identities=26% Similarity=0.276 Sum_probs=92.9
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh---hhh---h-hcc--hHHHHHH-HHHHHHcCCCEEEEEeCC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL---VQK---Y-VGE--GARMVRE-LFQMARSKKACIVFFDEV 270 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l---~~~---~-~g~--~~~~v~~-lf~~a~~~~p~Il~iDEi 270 (426)
..+++||-|.||+|||.|..++|+.+|..+++++.++- +.- + .++ ++-.+++ -|-.|.. ...-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehh
Confidence 46789999999999999999999999999999998752 221 1 122 2223333 2222222 2348999999
Q ss_pred CcccCCccCCCCCCChHHHHHHHHHHHHhc---------CCCCCCCeEEEEEeCCC------CCCCccccCCCCcceEEE
Q 014332 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLD---------GFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVE 335 (426)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l~---------~~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~ 335 (426)
... +..+..-|...|+.-. .|+...++.|.+|-|+. ..|+..++. ||. ++.
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 765 4455555555555422 23445678888887764 568889998 995 677
Q ss_pred ecCCCHHHHHHHHHHHHh
Q 014332 336 FGLPDLESRTQIFKIHTR 353 (426)
Q Consensus 336 ~~~P~~~er~~Il~~~l~ 353 (426)
+...+.+....|......
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 777777777776665544
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.95 E-value=7.6e-05 Score=70.48 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=50.8
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEecchhhhhhhc------------------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQKYVG------------------------------ 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~~~l~~~~~g------------------------------ 244 (426)
|++.+..++++||||+|||+++..++.+ .+.+.++++..+-...+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 7888889999999999999999999764 2566666654332111100
Q ss_pred ---chHHHHHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 245 ---EGARMVRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 245 ---~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
.....+..+.+......|.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 012233334444455678899999998763
No 292
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.94 E-value=7.4e-06 Score=68.77 Aligned_cols=31 Identities=35% Similarity=0.612 Sum_probs=27.4
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
|+|.||||+||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988775543
No 293
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.92 E-value=8e-05 Score=66.36 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhh--------hhhhcc-----hHHHHHHHHHHHHcCCC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV--------QKYVGE-----GARMVRELFQMARSKKA 262 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~--------~~~~g~-----~~~~v~~lf~~a~~~~p 262 (426)
.+.++..+.|.||+|+|||+|++.++.... .--+.+++..+. ...++- +...-+-.+..|....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 456778899999999999999999998642 112333332221 111111 12233445666667888
Q ss_pred EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014332 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 319 (426)
.++++||--.- -+....+.+.+++.++. ..+..+|++|+..+.
T Consensus 102 ~illlDEP~~~----------LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~ 144 (163)
T cd03216 102 RLLILDEPTAA----------LTPAEVERLFKVIRRLR----AQGVAVIFISHRLDE 144 (163)
T ss_pred CEEEEECCCcC----------CCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 99999997543 26777778888887763 124567778876543
No 294
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.91 E-value=6.9e-05 Score=75.23 Aligned_cols=113 Identities=17% Similarity=0.297 Sum_probs=64.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCC-----c-EEEEecch---------------hhhhhhcchHHHHH---HHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDA-----C-FIRVIGSE---------------LVQKYVGEGARMVR---ELFQMA 257 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~-----~-~i~v~~~~---------------l~~~~~g~~~~~v~---~lf~~a 257 (426)
+.-.+|+||||+|||+|++.+++.... . ++.+.... +.+.+.......++ .+++.|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999986632 2 33332221 11222222233333 233333
Q ss_pred H----cCCCEEEEEeCCCcccCCccC--------CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 258 R----SKKACIVFFDEVDAIGGARFD--------DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 258 ~----~~~p~Il~iDEiD~l~~~r~~--------~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
. .+...+||||||++++..... .+.+-++.....+-.|+..-......+.+.+|+|.
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 2 345679999999998532211 11233445555555666655444456677777764
No 295
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=0.00016 Score=71.43 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=95.0
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh-------
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK------- 241 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~------- 241 (426)
.+.+.+.++..+...+-. . .-.-|..+.|||..|||||.+++.+.+.++.+.+.+++-+...-
T Consensus 7 ~v~~Re~qi~~L~~Llg~-~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN-N---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCC-C---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 477889999999888742 0 11347778999999999999999999999999999988664331
Q ss_pred ---h-----hcchH----HHHH---HHHHH---HHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC
Q 014332 242 ---Y-----VGEGA----RMVR---ELFQM---ARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 302 (426)
Q Consensus 242 ---~-----~g~~~----~~v~---~lf~~---a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 302 (426)
. .|..- ..+. .+|.. +... .--.|++|.+|.+.. .+......+.++-+.+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~--- 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELL--- 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHh---
Confidence 0 11111 1111 12222 2222 345888999999932 1333444444444333
Q ss_pred CCCCCeEEEEEeCCCCCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHH
Q 014332 303 DARGNIKVLMATNRPDTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIH 351 (426)
Q Consensus 303 ~~~~~v~vI~atn~~~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~ 351 (426)
....+.+|.+.-.... .-+.+-|-++ ..+.||.|+.++-+.|+..-
T Consensus 146 -~~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 -NEPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred -CCCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2334444444322211 1111223332 47899999999999988643
No 296
>PRK09354 recA recombinase A; Provisional
Probab=97.89 E-value=5.4e-05 Score=75.28 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEecchhhhh-h---------------hcchHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK-Y---------------VGEGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~~~l~~~-~---------------~g~~~~~v~~lf~~a~ 258 (426)
|++..+-++++||||||||+|+-.++.. .+...++++..+-... + ....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6777888999999999999999988754 3667777776542221 0 1112223333333445
Q ss_pred cCCCEEEEEeCCCcccC
Q 014332 259 SKKACIVFFDEVDAIGG 275 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~ 275 (426)
...+.+|+||=+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 67788999999999875
No 297
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.89 E-value=6.4e-05 Score=70.35 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---C------CcEEEEecchhhhh-hh-----------------------c
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---D------ACFIRVIGSELVQK-YV-----------------------G 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~------~~~i~v~~~~l~~~-~~-----------------------g 244 (426)
|+....-+.|+||||+|||+++..+|... + ...++++...-... .+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 77888889999999999999999998753 3 55666666432110 00 0
Q ss_pred chH---HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 245 ~~~---~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
..+ ..++.+........+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||++..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 011 1112222212246778999999998864321111 001222344455555555444456777777664
No 298
>PHA00729 NTP-binding motif containing protein
Probab=97.87 E-value=2e-05 Score=73.63 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhcC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~ 227 (426)
..++|+|+||||||++|.++|+.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 299
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.86 E-value=0.00018 Score=68.23 Aligned_cols=38 Identities=32% Similarity=0.329 Sum_probs=30.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~ 235 (426)
|+.++..+|++||||||||+++..++.+ .|.+.+++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 7888899999999999999999877654 2555655544
No 300
>PRK04296 thymidine kinase; Provisional
Probab=97.85 E-value=0.00013 Score=66.78 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=41.2
Q ss_pred cceEecCCCChHHHHHHHHHHhc---CCcEEEEecc----h----hhhhhhcch-----HHHHHHHHHHH--HcCCCEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS----E----LVQKYVGEG-----ARMVRELFQMA--RSKKACIV 265 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~----~----l~~~~~g~~-----~~~v~~lf~~a--~~~~p~Il 265 (426)
-.+++||+|+|||+++..++.++ +..++.+.+. . +.+. .|-. .....+++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999999988865 4454544321 1 1111 1110 01122333333 33456799
Q ss_pred EEeCCCcc
Q 014332 266 FFDEVDAI 273 (426)
Q Consensus 266 ~iDEiD~l 273 (426)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999876
No 301
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.80 E-value=7e-05 Score=70.51 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=67.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhhh-hh------------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQK-YV------------------------ 243 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~~-~~------------------------ 243 (426)
|+.+..-+.|+||||||||+++..++... +...++++..+-... ..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 67788889999999999999999998542 256677776441110 00
Q ss_pred --cchHHHHHHHHHHHHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 244 --GEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 244 --g~~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.+....+..+-...... .+.+|+||-+..+......+. +......+.+.+++..+..+....++.||++..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00011122222333445 789999999998753211111 001233344555555555444456777777654
No 302
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.80 E-value=0.00021 Score=68.22 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=64.1
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc------EEEEecc------hhhhhh--------hcch-HHH---HHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS------ELVQKY--------VGEG-ARM---VRELFQ 255 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~------~i~v~~~------~l~~~~--------~g~~-~~~---v~~lf~ 255 (426)
..+..++|.||+|+|||+|++.+++..... |+.+... ++.... .+++ ... ...+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 356679999999999999999999977542 3332222 111111 1211 111 122333
Q ss_pred HHH----cCCCEEEEEeCCCcccCCc-------cCC-CCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 256 MAR----SKKACIVFFDEVDAIGGAR-------FDD-GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 256 ~a~----~~~p~Il~iDEiD~l~~~r-------~~~-~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
.|. .+...+||+||+.++...- +.. +.|.++.+...+-+++..-..+...+.+.++.|.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 332 3556799999999874221 111 2233555666666777654443345666666443
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.79 E-value=2e-05 Score=70.31 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.++..++|+||||||||++|+.+|+.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999888743
No 304
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.79 E-value=0.00021 Score=72.80 Aligned_cols=192 Identities=23% Similarity=0.278 Sum_probs=106.3
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHH-----HHHHH--H-HcCCCEEEEEeCCCcccC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVR-----ELFQM--A-RSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~-----~lf~~--a-~~~~p~Il~iDEiD~l~~ 275 (426)
+|||.|.|||.|+.|.+.+-.-....++.- +- -+.-.|-++..+| +.+-+ | -.....|++|||+|++-
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTS-GK--GSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr- 441 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTS-GK--GSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR- 441 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEec-CC--CcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC-
Confidence 599999999999999999876543222211 10 0000111111111 00000 0 01123599999999982
Q ss_pred CccCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCC-----------CCC--CccccCCCCcceEE
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP-----------DTL--DPALLRPGRLDRKV 334 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~v~vI~atn~~-----------~~l--d~al~r~gRf~~~i 334 (426)
++-.-++-+.+++- -|+ .-+.++-|++|+|.+ +.+ -+.+++ |||..+
T Consensus 442 ----------e~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIF 509 (729)
T KOG0481|consen 442 ----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIF 509 (729)
T ss_pred ----------chhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEE
Confidence 22222233333321 122 224567788999863 223 378888 999988
Q ss_pred EecCCCHHHH-----HHHHHHHHhcCCCC--------CCccHHHHHH---------------------------------
Q 014332 335 EFGLPDLESR-----TQIFKIHTRTMNCE--------RDIRFELLAR--------------------------------- 368 (426)
Q Consensus 335 ~~~~P~~~er-----~~Il~~~l~~~~~~--------~~v~l~~la~--------------------------------- 368 (426)
-+..-..++| ..++..|....+.. ..+.++.+-+
T Consensus 510 IVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~ 589 (729)
T KOG0481|consen 510 IVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVR 589 (729)
T ss_pred EEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHH
Confidence 7776433333 33445555322111 1122221100
Q ss_pred ---------hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 014332 369 ---------LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 369 ---------~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~ 411 (426)
.+--.+-+++.++++-+..+|..+.....|.+|+.+|++-+.-
T Consensus 590 q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 590 QHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred HhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 0011245899999999999998888999999999999986543
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.77 E-value=7.3e-05 Score=64.50 Aligned_cols=36 Identities=31% Similarity=0.639 Sum_probs=28.9
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
+++.||||+||||+|+.++..++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999998 4446665555443
No 306
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.77 E-value=4.7e-05 Score=80.19 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=68.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc-------CCc----EEEEecc------h-------------hhhhh-----
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT-------DAC----FIRVIGS------E-------------LVQKY----- 242 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l-------~~~----~i~v~~~------~-------------l~~~~----- 242 (426)
.++++..+|+.||+|||||+|.|++|.-. +.| .+.+.-. . +-...
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 56788899999999999999999999842 111 1211100 0 00000
Q ss_pred ----hcc----------------hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC
Q 014332 243 ----VGE----------------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 302 (426)
Q Consensus 243 ----~g~----------------~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 302 (426)
.|. ....-|-.|....-++|.++||||.-.-. +++.+..++++++.
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL----------De~~e~~l~q~l~~---- 560 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL----------DEETEDRLYQLLKE---- 560 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc----------ChHHHHHHHHHHHh----
Confidence 000 11223445666677899999999986543 67888888888875
Q ss_pred CCCCCeEEEEEeCCCC
Q 014332 303 DARGNIKVLMATNRPD 318 (426)
Q Consensus 303 ~~~~~v~vI~atn~~~ 318 (426)
.-..+.||-.++++.
T Consensus 561 -~lp~~tvISV~Hr~t 575 (604)
T COG4178 561 -ELPDATVISVGHRPT 575 (604)
T ss_pred -hCCCCEEEEeccchh
Confidence 235677888887753
No 307
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.002 Score=60.62 Aligned_cols=139 Identities=9% Similarity=0.064 Sum_probs=96.4
Q ss_pred CCCcceEecCCC-ChHHHHHHHHHHhcCC---------cEEEEecchhhhhh-hcchHHHHHHHHHHH----HcCCCEEE
Q 014332 201 PPKGVLCYGPPG-TGKTLLARAVANRTDA---------CFIRVIGSELVQKY-VGEGARMVRELFQMA----RSKKACIV 265 (426)
Q Consensus 201 ~~~~vLL~GppG-tGKT~laralA~~l~~---------~~i~v~~~~l~~~~-~g~~~~~v~~lf~~a----~~~~p~Il 265 (426)
-....||.|..+ +||..++..++..+.+ .++.+....-..+. ..-+-..+|++.+.+ ......|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 356799999998 9999999998886533 23333221100000 001233455544443 33455799
Q ss_pred EEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 014332 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (426)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~ 345 (426)
+|+++|.+ ..+....|+-.|++ ++.++.+|..|+.+..+.|.+++ |+ ..+.|+.|....-.
T Consensus 94 II~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 94 IIYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYN 154 (263)
T ss_pred EEechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHH
Confidence 99999999 56667777777764 67888999999999999999999 88 68899999998888
Q ss_pred HHHHHHHhcCCCC
Q 014332 346 QIFKIHTRTMNCE 358 (426)
Q Consensus 346 ~Il~~~l~~~~~~ 358 (426)
++....+..+...
T Consensus 155 e~~~~~~~p~~~~ 167 (263)
T PRK06581 155 ELYSQFIQPIADN 167 (263)
T ss_pred HHHHHhccccccc
Confidence 8777776655433
No 308
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.75 E-value=4e-05 Score=80.18 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=47.2
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-CcEEEEec
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-ACFIRVIG 235 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-~~~i~v~~ 235 (426)
.-|+|+.|++++++++.+.+.... ..++ ...+.++|.||||+|||+||++||+.+. .+++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa------~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAA------QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHH------HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 357789999999999998884311 1111 2445789999999999999999999763 35555544
No 309
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.74 E-value=9.7e-05 Score=69.44 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=23.9
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++.-+-|.||+|||||||.+.+|.-.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556679999999999999999999853
No 310
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.74 E-value=0.00034 Score=63.16 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.5
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
++++||||+||||+|+.+|..++... ++..+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHH
Confidence 68999999999999999999998644 555555544
No 311
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.74 E-value=2.4e-05 Score=71.85 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=59.1
Q ss_pred ceEecCCCChHHHHHHHH-HHh---cCCcEEEEecchhhhhhhcc----hHH-------------HHHHHHHHHHcCCCE
Q 014332 205 VLCYGPPGTGKTLLARAV-ANR---TDACFIRVIGSELVQKYVGE----GAR-------------MVRELFQMARSKKAC 263 (426)
Q Consensus 205 vLL~GppGtGKT~laral-A~~---l~~~~i~v~~~~l~~~~~g~----~~~-------------~v~~lf~~a~~~~p~ 263 (426)
.+++|.||+|||+.|-.. ... -|.+++. +...|.-..+.. ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 432 2555554 443222111111 000 001111111111467
Q ss_pred EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCC
Q 014332 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P 339 (426)
+|+|||++.+++.|...+ ......+ +++.+.. ..+.-||.+|..+..+|+.+++ +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999998774311 1122223 4444432 3467799999999999999987 77776666543
No 312
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.73 E-value=0.00034 Score=63.29 Aligned_cols=106 Identities=22% Similarity=0.206 Sum_probs=65.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchh---hhhh-hcchHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL---VQKY-VGEGARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l---~~~~-~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
+.+...+.|.||+|+|||||++.++.... .--+.+++..+ .+.. ...+ ..-+-.+..+....|.++++||--.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECCcc
Confidence 45677899999999999999999998642 11223332111 1110 1112 2233345556667888999999754
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
- -+......+.+++.++. ...+..+|++|+..+
T Consensus 101 ~----------LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 101 Y----------LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred c----------CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 3 26667777777776653 123245777887654
No 313
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=6.4e-05 Score=67.62 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=29.1
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
-+++.|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 378999999999999999999999988877643
No 314
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.71 E-value=0.00017 Score=69.44 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=61.7
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEe-cchhhh
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVI-GSELVQ 240 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~-~~~l~~ 240 (426)
.++++++-..++.+.+.+++.. +...+++.||+|+||||+++++..... ..++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3567787777777888777643 334589999999999999999987763 2344442 222211
Q ss_pred h-----hhc-chHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 241 K-----YVG-EGARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 241 ~-----~~g-~~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
. .+. +.......+...+....|.+|+++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 1 111 1112345666777788999999999853
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.71 E-value=0.0002 Score=65.94 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=42.5
Q ss_pred cceEecCCCChHHHHHHHHHHhcCC----cEEEEec-chhhh---------hhhcchHHHHHHHHHHHHcCCCEEEEEeC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDA----CFIRVIG-SELVQ---------KYVGEGARMVRELFQMARSKKACIVFFDE 269 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~----~~i~v~~-~~l~~---------~~~g~~~~~v~~lf~~a~~~~p~Il~iDE 269 (426)
-+++.||+|+||||++++++..+.. .++.+.. .++.. .-+|.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999987642 2222211 12111 01122222344556666677899999999
Q ss_pred C
Q 014332 270 V 270 (426)
Q Consensus 270 i 270 (426)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.71 E-value=0.00031 Score=61.25 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecch---hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE---LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~---l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
.+.+...+.|.||+|+|||+|+++++..... --+.+++.. ++.. ...+ ..-+-.+..|....|.++++||-..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G-~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGG-EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHH-HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3567778999999999999999999986521 112222110 0000 1111 1223344555567788999999765
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
-. +......+.+++..+. ..+|++|+.++.+
T Consensus 100 ~L----------D~~~~~~l~~~l~~~~-------~til~~th~~~~~ 130 (144)
T cd03221 100 HL----------DLESIEALEEALKEYP-------GTVILVSHDRYFL 130 (144)
T ss_pred CC----------CHHHHHHHHHHHHHcC-------CEEEEEECCHHHH
Confidence 32 5666667777776641 3577788876433
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.70 E-value=0.00021 Score=64.62 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCc-------------EEEEecchhhhhh----------hcc--hHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------FIRVIGSELVQKY----------VGE--GARMVRE 252 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------------~i~v~~~~l~~~~----------~g~--~~~~v~~ 252 (426)
.+.++.-+.|.||+|+|||||.++++...|.. +..+...+++..+ ... .....+-
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl 96 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRV 96 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence 34667779999999999999999997432211 1111111111111 111 1122333
Q ss_pred HHHHHHcCC--CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCc
Q 014332 253 LFQMARSKK--ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (426)
Q Consensus 253 lf~~a~~~~--p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf 330 (426)
.+..+.... |.++++||--.-. +......+.+++..+. . .+..||++|+.++.+ + .+
T Consensus 97 ~laral~~~~~p~llLlDEPt~~L----------D~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~-----~--~~ 155 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTGL----------HQQDINQLLEVIKGLI---D-LGNTVILIEHNLDVL-----S--SA 155 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcccC----------CHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH-----H--hC
Confidence 455555566 8899999975532 6666777777777653 1 245678888876532 2 34
Q ss_pred ceEEEec
Q 014332 331 DRKVEFG 337 (426)
Q Consensus 331 ~~~i~~~ 337 (426)
|+.+.+.
T Consensus 156 d~i~~l~ 162 (176)
T cd03238 156 DWIIDFG 162 (176)
T ss_pred CEEEEEC
Confidence 5555554
No 318
>PHA02624 large T antigen; Provisional
Probab=97.67 E-value=0.00016 Score=75.98 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r 277 (426)
|++..+.++|+||||||||+++.++++.++...+.++++.-... |...-....-+.+||++-.-+...
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 55666799999999999999999999999777777775532111 222111222388999986443311
Q ss_pred cC--CCCCCChHHHHHHHHHHHHhcCCC-------CCCC-----eEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 014332 278 FD--DGVGGDNEVQRTMLEIVNQLDGFD-------ARGN-----IKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 278 ~~--~~~~~~~~~~~~l~~ll~~l~~~~-------~~~~-----v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 338 (426)
.+ .+.+-+ -+..|=+.+||.. .... ...|+|||. ..++..+.- ||...+.|..
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 11 011111 1223344556541 1111 235667774 457777777 8888888874
No 319
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.66 E-value=0.0012 Score=74.30 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec--ch-----hhhhh---h-----cc---------------hHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--SE-----LVQKY---V-----GE---------------GARMV 250 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~--~~-----l~~~~---~-----g~---------------~~~~v 250 (426)
..+-++++||+|.|||+++...+...+ ++..++. .+ |.... + +. ....+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLF 109 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHH
Confidence 345699999999999999999988765 4444433 21 11100 0 00 01122
Q ss_pred HHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCc-cccCCC
Q 014332 251 RELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP-ALLRPG 328 (426)
Q Consensus 251 ~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~-al~r~g 328 (426)
..++..... ..|.+|+|||++.+- ++.+...+..++..+ ..++.+|+++.....+.- .+.-
T Consensus 110 ~~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~-- 172 (903)
T PRK04841 110 AQLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRV-- 172 (903)
T ss_pred HHHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHh--
Confidence 333333333 678899999999982 345555666666642 455666666654222211 1111
Q ss_pred CcceEEEec----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcH
Q 014332 329 RLDRKVEFG----LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (426)
Q Consensus 329 Rf~~~i~~~----~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg 375 (426)
-+..+++. ..+.++-..++...+.. .+ ..-....+...|.|...
T Consensus 173 -~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 173 -RDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWAT 220 (903)
T ss_pred -cCcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHH
Confidence 11234444 55888888888765432 12 22345778888888643
No 320
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.66 E-value=0.00041 Score=62.60 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=67.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhhh------h---hhcc------------------hHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ------K---YVGE------------------GAR 248 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~~------~---~~g~------------------~~~ 248 (426)
.+.++..+.|.||+|+|||+|++.++.... .--+.+++..+.. . |+.+ +..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 456778899999999999999999998642 1122333321110 0 0000 012
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 249 ~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
..+-.+..|-...|.++++||--.-. +......+.+++..+. . +..+|++|+.++.+
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 23334555666788899999976532 6667777888887653 2 34677788776544
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.65 E-value=0.00015 Score=69.97 Aligned_cols=68 Identities=28% Similarity=0.321 Sum_probs=43.3
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCC----------cEEEEe-cchhhhhh-------hcc------hHHHHHHHHHHHH
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDA----------CFIRVI-GSELVQKY-------VGE------GARMVRELFQMAR 258 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~----------~~i~v~-~~~l~~~~-------~g~------~~~~v~~lf~~a~ 258 (426)
.+++|.||+|+||||++++++..+.. .+..++ ..++...+ +|. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999997632 222121 12222211 111 1112334566677
Q ss_pred cCCCEEEEEeCC
Q 014332 259 SKKACIVFFDEV 270 (426)
Q Consensus 259 ~~~p~Il~iDEi 270 (426)
...|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999995
No 322
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.64 E-value=0.0004 Score=66.79 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
|+.+...++++||||||||+++..+|... +.+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 67788889999999999999999987642 445555543
No 323
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00046 Score=60.83 Aligned_cols=110 Identities=23% Similarity=0.351 Sum_probs=66.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhhh-------hhhc-----chHHHHHHHHHHHHcCCCE
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ-------KYVG-----EGARMVRELFQMARSKKAC 263 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~~-------~~~g-----~~~~~v~~lf~~a~~~~p~ 263 (426)
.+.+...+.|.||+|+|||+|+++++..... --+.+++..+.. ..++ .+...-+-.+..+-...|.
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCC
Confidence 3456778999999999999999999986532 223343322211 1011 0111222334445556678
Q ss_pred EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
++++||...-. +......+.+++..+.. . +..+|++|+..+.+.
T Consensus 101 i~ilDEp~~~l----------D~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 101 LLLLDEPTSGL----------DPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred EEEEeCCCcCC----------CHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 99999987542 55556667777766531 2 346788887765443
No 324
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.64 E-value=0.00018 Score=67.50 Aligned_cols=108 Identities=21% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhh-------------------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKY------------------------------- 242 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~~------------------------------- 242 (426)
|++++..+|+.||||||||+++..++... |.+.+.+...+-....
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 77888899999999999999999877532 6777777643321110
Q ss_pred --hcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 243 --VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 243 --~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.......+..+.+......+.+++||-+..+.... ........+..+...+. ..++.+|+++.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~------~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD------DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS------SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC------CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01123334445555556667899999999982211 12334444555555553 33455566655
No 325
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.62 E-value=0.00024 Score=62.88 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+.++..++|+||+|||||+|.|++|..
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 3466778999999999999999999984
No 326
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.62 E-value=0.00052 Score=64.01 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=58.6
Q ss_pred CCcceEecCCCChHHHHHHHHHH-----hcCCcEE--------------EEecchhhhhhhcchHHHHHHH-HHHHHcCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVAN-----RTDACFI--------------RVIGSELVQKYVGEGARMVREL-FQMARSKK 261 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~-----~l~~~~i--------------~v~~~~l~~~~~g~~~~~v~~l-f~~a~~~~ 261 (426)
++.++|+||.|+|||++.|.++. ..|.... .+...+-+..........++.+ +..+....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 36799999999999999999983 2333221 1111111111111112222222 22233467
Q ss_pred CEEEEEeCCCcccCCccCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCcc
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPA 323 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~a 323 (426)
+++++|||+..-. +. +....+..++..+.. .......+|++|+..+.+...
T Consensus 109 ~slvllDE~~~gt----------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGT----------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCC----------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhh
Confidence 8899999986532 32 333444455555421 111245688889876554433
No 327
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.62 E-value=9.5e-05 Score=71.33 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC---cEEEEe-cch
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVI-GSE 237 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~---~~i~v~-~~~ 237 (426)
....++++++-.....+.+.+++.. .+.....+++.||+|+|||++++++...... .++.+. ..+
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~-----------~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRS-----------AVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHH-----------CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred cccccHhhccCchhhHHHHHHHHhh-----------ccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 3455777787666666666666654 1234678999999999999999999997633 333332 222
Q ss_pred hhhhh-------hcchHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 238 LVQKY-------VGEGARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 238 l~~~~-------~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
+.-.. .........+++..+....|.+|++.|+-.
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 21110 011223455677778888999999999864
No 328
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.62 E-value=0.00059 Score=61.31 Aligned_cols=107 Identities=24% Similarity=0.398 Sum_probs=66.3
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhh--------hh--hhc---------------chHHHHH
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV--------QK--YVG---------------EGARMVR 251 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~--------~~--~~g---------------~~~~~v~ 251 (426)
+.++..+.|.||+|+|||+|++.++.... .--+.+++..+. .. |+. .+...-+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence 45667799999999999999999998642 111222221110 00 000 1112233
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 319 (426)
-.+..|....|.++++||--.- -+......+.+++..+.. .+..+|++|+..+.
T Consensus 105 v~la~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 4555666688899999997543 267777778888876631 24567788876643
No 329
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00051 Score=63.26 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
-....|....|.++++||--+.. |++....++.++..+- ..+..+|+.|+.
T Consensus 145 VAIARALaM~P~vmLFDEPTSAL----------DPElv~EVL~vm~~LA----~eGmTMivVTHE 195 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSAL----------DPELVGEVLDVMKDLA----EEGMTMIIVTHE 195 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccC----------CHHHHHHHHHHHHHHH----HcCCeEEEEech
Confidence 34455666889999999987653 7888888887777664 234556666764
No 330
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.61 E-value=0.00012 Score=67.31 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=25.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
.+.+++.||||||||++++.++..+ +..++.+...
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4568889999999999999988754 5556555543
No 331
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00038 Score=62.41 Aligned_cols=108 Identities=28% Similarity=0.386 Sum_probs=66.8
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhhh-------h---hhc---------------chHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ-------K---YVG---------------EGARMV 250 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~~-------~---~~g---------------~~~~~v 250 (426)
.+.+...+.|.||+|+|||+|++.++..... --+.+++..+.. . |+. .+...-
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHH
Confidence 4567788999999999999999999986521 112222221100 0 000 001112
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 251 ~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
+-.+..+-...|.++++||--.- -+......+.+++..+. . +..+|++|+.++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSA----------LDPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 23345555678899999996543 26666777778887653 1 35688888876654
No 332
>PRK06762 hypothetical protein; Provisional
Probab=97.60 E-value=0.00018 Score=64.07 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=31.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
|.-++|+|+||+||||+|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 456899999999999999999999866676677666554
No 333
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00082 Score=67.32 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=71.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc--CCcEEEEecchhhhhhhcc--------------hHHHHHHHHHHHHcCC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKYVGE--------------GARMVRELFQMARSKK 261 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l--~~~~i~v~~~~l~~~~~g~--------------~~~~v~~lf~~a~~~~ 261 (426)
|+-+..-+|+-|.||.|||||.-.+|..+ ..+++++.+.+-.+..... .+..+..+.+.+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 56777889999999999999998888876 2379999988755443111 2445678888888999
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
|.+++||-|..+....-++..++-..+...-.+|++
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999876655444443333333333433
No 334
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.60 E-value=0.0003 Score=69.05 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC-----CcEEEEec-chhh-------hhhhcchHHHHHHHHHHHHcCCCEEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIG-SELV-------QKYVGEGARMVRELFQMARSKKACIVFF 267 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~-----~~~i~v~~-~~l~-------~~~~g~~~~~v~~lf~~a~~~~p~Il~i 267 (426)
..++++++||+|+|||++++++++... ..++.+.- .++. .-..+.....+..++..+....|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 357899999999999999999998752 23333321 1211 0011111224567788888899999999
Q ss_pred eCCC
Q 014332 268 DEVD 271 (426)
Q Consensus 268 DEiD 271 (426)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9985
No 335
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.59 E-value=0.00037 Score=58.53 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l 226 (426)
++++++||+|+|||+++-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999999888765
No 336
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.59 E-value=0.00012 Score=73.39 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=46.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC----CcEEEEe-cchhh---------hhhhcchHHHHHHHHHHHHcCCCEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVI-GSELV---------QKYVGEGARMVRELFQMARSKKACIVF 266 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~----~~~i~v~-~~~l~---------~~~~g~~~~~v~~lf~~a~~~~p~Il~ 266 (426)
+...+++.||+|+||||+++++.+... ..++.+. ..++. ..-+|.....+...+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 445689999999999999999998664 2233331 11221 111222222345566677778999999
Q ss_pred EeCCC
Q 014332 267 FDEVD 271 (426)
Q Consensus 267 iDEiD 271 (426)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 337
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.59 E-value=0.00026 Score=68.21 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=30.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~ 235 (426)
|+.+...++|.||||+|||+++..+|... +..++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 67778889999999999999999887753 555555554
No 338
>PRK04040 adenylate kinase; Provisional
Probab=97.58 E-value=0.00063 Score=62.17 Aligned_cols=30 Identities=30% Similarity=0.404 Sum_probs=25.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc--CCcEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT--DACFI 231 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l--~~~~i 231 (426)
+.-++++|+||||||++++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999998 55543
No 339
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.58 E-value=0.00015 Score=82.28 Aligned_cols=135 Identities=19% Similarity=0.290 Sum_probs=93.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh--hhhhcc----hHHH---HHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--QKYVGE----GARM---VRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~--~~~~g~----~~~~---v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
..+||.||+.+|||.+...+|.++|..|++++-.+.. +.|+|. .... -..++-.|..... -|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy-WIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY-WIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc-EEEeeccccC
Confidence 4599999999999999999999999999999876542 234333 1111 1112233333333 8999999875
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCC---------CCCCCeEEEEEeCCC------CCCCccccCCCCcceEEEecC
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGF---------DARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~---------~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~~~~ 338 (426)
..++..+|.+||+.-..+ .+..++.+.+|-|+| ..|..|++. || ..+.|..
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 567888888888653321 234456666666766 457789988 98 5677777
Q ss_pred CCHHHHHHHHHHHH
Q 014332 339 PDLESRTQIFKIHT 352 (426)
Q Consensus 339 P~~~er~~Il~~~l 352 (426)
-...+...||+..+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 77788888876543
No 340
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.58 E-value=0.00049 Score=63.43 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.4
Q ss_pred CCCC-CcceEecCCCChHHHHHHHHH
Q 014332 199 IDPP-KGVLCYGPPGTGKTLLARAVA 223 (426)
Q Consensus 199 ~~~~-~~vLL~GppGtGKT~laralA 223 (426)
+.++ +.++|+||.|+|||++.+.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444 469999999999999999998
No 341
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.58 E-value=6.6e-05 Score=67.37 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.4
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 342
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.57 E-value=0.002 Score=61.00 Aligned_cols=133 Identities=15% Similarity=0.245 Sum_probs=77.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc--EEEEecchhhhhh--------hcc------hHHHH----HHHHHHHH-
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSELVQKY--------VGE------GARMV----RELFQMAR- 258 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~--~i~v~~~~l~~~~--------~g~------~~~~v----~~lf~~a~- 258 (426)
+.|-.+.+.|++|||||++++.+...+... .+.+-++...+.| +.. .+..+ ..+-+.++
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 456679999999999999999998766432 2222222221111 000 01111 11111111
Q ss_pred --c---CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceE
Q 014332 259 --S---KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRK 333 (426)
Q Consensus 259 --~---~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~ 333 (426)
. ..+.+|+||++-. ...-...+.+++.... .-++.+|..+.....+++.++. -.+..
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~gR----H~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNGR----HYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhccc----ccceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 2367999999632 1112344666665432 3468899999999999999977 67777
Q ss_pred EEecCCCHHHHHHHHHHH
Q 014332 334 VEFGLPDLESRTQIFKIH 351 (426)
Q Consensus 334 i~~~~P~~~er~~Il~~~ 351 (426)
+-++ .+......|++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 7675 4566655555544
No 343
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.57 E-value=0.00072 Score=63.34 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh------c--------c---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------G--------E--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~------g--------~--------------- 245 (426)
|+.++..+++.|+||+|||+++..++... +.+.++++..+-..... | .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 77788889999999999999999888642 65666665533221100 0 0
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 246 ~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.......+........+..++||-+..+... .+.+......+..++..+. ..++.++++++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~~ 153 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSEA 153 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 0011112222334556778999988876211 0113344455666776654 235556666653
No 344
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.56 E-value=0.00094 Score=60.76 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=54.1
Q ss_pred ceEecCCCChHHHHHHHHHH-----hcCCcE--------------EEEecchhhhhhhcchHHHHHHHHHHHH-cCCCEE
Q 014332 205 VLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELVQKYVGEGARMVRELFQMAR-SKKACI 264 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~-----~l~~~~--------------i~v~~~~l~~~~~g~~~~~v~~lf~~a~-~~~p~I 264 (426)
++|+||.|+|||+++|.++- ..|++. ..+...+-.....+......+.+-..+. ...|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999993 233321 1122222222222222233333222222 247889
Q ss_pred EEEeCCCcccCCccCCCCCCChHH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 265 VFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
+++||.-.-. ++.. ...+..++..+. ...+..+|++|+..+
T Consensus 82 lllDEp~~g~----------d~~~~~~~~~~~l~~l~---~~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT----------STYDGVAIAAAVLEYLL---EKIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC----------CHHHHHHHHHHHHHHHH---hcCCCeEEEEecHHH
Confidence 9999986632 3332 223334555442 122456788888753
No 345
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.56 E-value=0.00082 Score=60.02 Aligned_cols=104 Identities=29% Similarity=0.370 Sum_probs=63.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEec--------c--hhhh-----h----hhcc--hHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIG--------S--ELVQ-----K----YVGE--GARMVRELF 254 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~--------~--~l~~-----~----~~g~--~~~~v~~lf 254 (426)
.+.+...+.|.||+|+|||+|++.++..... --+.++. . .+.. . .... +...-+-.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~l 102 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAF 102 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHH
Confidence 4567778999999999999999999986421 0011111 0 0100 0 0000 112233345
Q ss_pred HHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 255 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
..|....|.++++||-..-. +......+.+++..+ +..+|++|+++.
T Consensus 103 aral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 55666788899999976542 666777777777764 245778888764
No 346
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.56 E-value=8.8e-05 Score=62.77 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=39.8
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.|.|+.-+.+.+..++...+..+ .-+.|--+-|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 48999999999999887654332 11233445689999999999999999974
No 347
>PRK04328 hypothetical protein; Provisional
Probab=97.55 E-value=0.00095 Score=63.78 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~ 235 (426)
|++++..+|++||||||||+|+..++.+ .|.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6778888999999999999999887654 2445555543
No 348
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00022 Score=67.67 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 251 ~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
|-++..|....|.++++||=-. +-|...+..++++|.++. .. +..|++.|.....+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHHh
Confidence 4456667778899999999422 347788889999998876 23 77788899876544
No 349
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.55 E-value=0.0004 Score=62.36 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=62.2
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh-----------------hcchHHHHHHHHHHHHcCCCEEEEE
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY-----------------VGEGARMVRELFQMARSKKACIVFF 267 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~-----------------~g~~~~~v~~lf~~a~~~~p~Il~i 267 (426)
+|++|++|+|||++|..++...+.+.+++....-...- ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 68999999999999999998877777777654322110 111222333333222 24569999
Q ss_pred eCCCcccCCccCCCCC-CChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 268 DEVDAIGGARFDDGVG-GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 268 DEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
|-+..+..+-...... ....+...+..++..+.. .++.+|+++|..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnEv 126 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNEV 126 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECCc
Confidence 9998876544322111 012234455556666542 234456667753
No 350
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.55 E-value=0.00037 Score=76.00 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=67.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEecchhhhh-h---h------------cchHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK-Y---V------------GEGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~~~l~~~-~---~------------g~~~~~v~~lf~~a~ 258 (426)
|+.+...++++||||||||+|+..++.. .+...++++..+-... + + ...+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 6788888999999999999999765543 3666667765543221 0 0 111222222333345
Q ss_pred cCCCEEEEEeCCCcccCCccCCCCCCC--hHHH-HHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 259 SKKACIVFFDEVDAIGGARFDDGVGGD--NEVQ-RTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~--~~~~-~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
...+.+|+||-+.++.+...-.+..++ ...+ +.+.++|..+..+-...++.+|+|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567899999999999863211111111 1223 3333445444443345566666654
No 351
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00041 Score=62.35 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=65.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhh-------h----------hhhc---------chHHHH
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV-------Q----------KYVG---------EGARMV 250 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~-------~----------~~~g---------~~~~~v 250 (426)
+.+...+.|.||+|+|||+|++.++..... --+.+++..+. . -+.+ .+...-
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 456678999999999999999999985411 11112211110 0 0000 011122
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 251 ~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
+-.+..|-...|.++++||-..-. +......+.+++..+. .. +..+|++|+.++
T Consensus 103 rv~laral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~---~~-g~tiii~th~~~ 156 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGL----------DPESRREFWELLRELK---KE-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
Confidence 334556666788999999976543 6777778888887763 12 345777777654
No 352
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.55 E-value=0.00043 Score=62.61 Aligned_cols=110 Identities=25% Similarity=0.331 Sum_probs=66.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhhh-------hhh----------c----------c--h
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-------KYV----------G----------E--G 246 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~~-------~~~----------g----------~--~ 246 (426)
.+.+...+.|.||+|+|||+|++.++.... .--+.+++..+.. ..+ | . +
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 356777899999999999999999998642 1123333322110 000 0 0 0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
...-+-.+..+....|.++++||--.-. +......+.+++..+. ...+..+|++|+.++.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~L----------D~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHL----------DIAHQIELLELLRRLA---RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCC----------CHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 1112233444555788899999975432 5666777777777653 12245678888876543
No 353
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.55 E-value=0.0012 Score=62.08 Aligned_cols=38 Identities=34% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
|+.+...++++||||+|||+++..++... +.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 78888899999999999999999877532 445555553
No 354
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00079 Score=68.28 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=67.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC-------CcEEEEecchhhh-------hh---------hcchHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVIGSELVQ-------KY---------VGEGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~-------~~~i~v~~~~l~~-------~~---------~g~~~~~v~~lf~~a 257 (426)
.|..++|+||+|+||||++..+|..+. ..+..+.+..+.. .| .......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 467899999999999999999998652 3333333332211 01 111222233333333
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCCccccCCCCc-ceEEE
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR-GNIKVLMATNRPDTLDPALLRPGRL-DRKVE 335 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~-~~v~vI~atn~~~~ld~al~r~gRf-~~~i~ 335 (426)
....+|+||.+..... +... +.++...++..... ..++|+-+|.....+...+.+-..+ ...+-
T Consensus 253 --~~~DlVLIDTaGr~~~---------~~~~---l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------DFMK---LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------CHHH---HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 3456999999987621 2222 33333333333223 3455565666555555433321111 12455
Q ss_pred ecCCCHHHHHH
Q 014332 336 FGLPDLESRTQ 346 (426)
Q Consensus 336 ~~~P~~~er~~ 346 (426)
|.-.|...+.-
T Consensus 319 ~TKlDet~~~G 329 (388)
T PRK12723 319 FTKLDETTCVG 329 (388)
T ss_pred EEeccCCCcch
Confidence 55566554443
No 355
>PRK13948 shikimate kinase; Provisional
Probab=97.54 E-value=0.00026 Score=64.38 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=34.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG 244 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g 244 (426)
+++..++|.|++|+|||++++.+|+.++.+|+..+ .++....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 45688999999999999999999999999998554 44444333
No 356
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.54 E-value=0.00054 Score=74.59 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCc
Q 014332 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (426)
Q Consensus 251 ~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf 330 (426)
|-.+..|--..|.||++||.-+-. |++..+.+.+-|.++. .+..+|..|+|+..+. ++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaL----------D~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti~-------~a 674 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSAL----------DPETEAIILQNLLQIL-----QGRTVIIIAHRLSTIR-------SA 674 (709)
T ss_pred HHHHHHHhccCCCEEEEeCccccc----------CHhHHHHHHHHHHHHh-----cCCeEEEEEccchHhh-------hc
Confidence 344555666889999999976543 6677777777777654 2355788888876443 66
Q ss_pred ceEEEec
Q 014332 331 DRKVEFG 337 (426)
Q Consensus 331 ~~~i~~~ 337 (426)
|+.+.+.
T Consensus 675 drIiVl~ 681 (709)
T COG2274 675 DRIIVLD 681 (709)
T ss_pred cEEEEcc
Confidence 6666554
No 357
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00034 Score=66.58 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=67.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCc--EEEEecchhhh-------------------------hhhcc--hHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSELVQ-------------------------KYVGE--GAR 248 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~--~i~v~~~~l~~-------------------------~~~g~--~~~ 248 (426)
.+.....+-|.|++||||||++|.+..-...+ -+...+.++.. +|..+ +.+
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 35667789999999999999999999865321 22333222111 11111 112
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 249 ~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.-|-.+..|....|.+++.||.-+.. +-.+|..++.|+..+. ...++..++.|+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq---~~~~lt~lFIsHD 169 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQ---EELGLTYLFISHD 169 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHH---HHhCCeEEEEEEE
Confidence 23334556667889999999988774 6677888888887765 2334555666654
No 358
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.53 E-value=0.00079 Score=62.11 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCCCcceEecCCCChHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~ 224 (426)
.++..++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3446799999999999999999993
No 359
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.53 E-value=0.00044 Score=65.35 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~ 235 (426)
|+.+..-++|.|+||+|||+++..++... +.+++.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 78888889999999999999999887643 667666654
No 360
>PRK03839 putative kinase; Provisional
Probab=97.53 E-value=6.8e-05 Score=67.78 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.8
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999999887653
No 361
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.53 E-value=0.00054 Score=70.44 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=63.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE-ecc-----
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV-IGS----- 236 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v-~~~----- 236 (426)
-..++++++......+.+.+++.. |..-+|++||+|+|||++..++.++++.+...+ ...
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 467889999999999999998864 334478889999999999999999886543321 111
Q ss_pred ---hhhhhhhcchH-HHHHHHHHHHHcCCCEEEEEeCCC
Q 014332 237 ---ELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVD 271 (426)
Q Consensus 237 ---~l~~~~~g~~~-~~v~~lf~~a~~~~p~Il~iDEiD 271 (426)
.+.+--+.... -.....++....+.|.||++.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11111111100 012234445567899999999985
No 362
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00065 Score=63.10 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC--------CcEEEEec-chhhhhhhcch-------------HHHHHHHHHHHHc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD--------ACFIRVIG-SELVQKYVGEG-------------ARMVRELFQMARS 259 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~--------~~~i~v~~-~~l~~~~~g~~-------------~~~v~~lf~~a~~ 259 (426)
..+.|+.|||||||||+.|-+|+-+. ..+..++- +++..-..|.. .-.-.-+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 34689999999999999999998652 23333432 33322211111 1112234556688
Q ss_pred CCCEEEEEeCCCcc
Q 014332 260 KKACIVFFDEVDAI 273 (426)
Q Consensus 260 ~~p~Il~iDEiD~l 273 (426)
+.|.|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 99999999999654
No 363
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.51 E-value=0.0004 Score=68.56 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=67.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh---------cCCcEEEEecchhhh---------hhhc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---------TDACFIRVIGSELVQ---------KYVG--------------- 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~---------l~~~~i~v~~~~l~~---------~~~g--------------- 244 (426)
|+....-+.|+||||+|||+++..+|-. .+...++++...-+. .+--
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 6788888999999999999999887732 245667776544110 1000
Q ss_pred chHH---HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 245 EGAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 245 ~~~~---~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
..+. .+..+-.......+.+|+||-+-+++.....+ .+.-.+.+..+.+++..+..+....++.||++..
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNq 244 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQ 244 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 0111 11222222334567899999999886532221 1112233444555555555444556776666543
No 364
>PRK13947 shikimate kinase; Provisional
Probab=97.51 E-value=7.9e-05 Score=66.55 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=28.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999986544
No 365
>PHA02774 E1; Provisional
Probab=97.50 E-value=0.00048 Score=72.26 Aligned_cols=37 Identities=30% Similarity=0.525 Sum_probs=29.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE-Ee
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-VI 234 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~-v~ 234 (426)
|++..++++||||||||||++|-++++.++...+. ++
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 33334689999999999999999999998655443 44
No 366
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=0.0016 Score=58.46 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.4
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
.++|.|++|+|||++++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 367
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.49 E-value=0.00034 Score=62.85 Aligned_cols=106 Identities=14% Similarity=0.164 Sum_probs=59.7
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhh-----------------cchHHHHHHHHHHHHcCCCEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV-----------------GEGARMVRELFQMARSKKACIVF 266 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~-----------------g~~~~~v~~lf~~a~~~~p~Il~ 266 (426)
.+|+.||||+|||++|..++..++.+++++........-+ -+....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4799999999999999999999887777665543221100 00011233333221 13355899
Q ss_pred EeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
||-+..+..+...... .......+..++..+.. .+..+|+++|.
T Consensus 82 ID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~----~~~tvVlVs~E 125 (170)
T PRK05800 82 VDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ----LPAKIILVTNE 125 (170)
T ss_pred ehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc----CCCCEEEEEcC
Confidence 9999888543321110 12334455566666552 23335555664
No 368
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.48 E-value=9.6e-05 Score=64.59 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=30.1
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
.++|+|+||+|||++|+.+|..++.+++..+ .+....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~ 37 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQR 37 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHH
Confidence 4789999999999999999999999887544 444433
No 369
>PRK14974 cell division protein FtsY; Provisional
Probab=97.47 E-value=0.002 Score=64.19 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh---h----------cchHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY---V----------GEGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-------~~---~----------g~~~~~v~~lf~~a 257 (426)
.|.-++|.||||+||||++..+|..+ +..+..+.+..+.. .+ . +.....+....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46789999999999999999888765 44444454432211 00 0 11123334444555
Q ss_pred HcCCCEEEEEeCCCcc
Q 014332 258 RSKKACIVFFDEVDAI 273 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (426)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555679999998776
No 370
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.47 E-value=0.00045 Score=68.93 Aligned_cols=116 Identities=20% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchh------hhh--hhcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL------VQK--YVGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l------~~~--~~g~--------------- 245 (426)
|+....-..|+||||||||+|+..+|-.. +...++++...- .+. ..|-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 77788889999999999999999887321 346677766431 000 0000
Q ss_pred -hH---HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 246 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 246 -~~---~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
.+ ..+..+-.......+.+|+||-|-+++.....+ .+...+.++.+.+++..+..+....++.||+|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 11 112222223344668899999999886542221 111233445566666555444445667677664
No 371
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.47 E-value=0.00043 Score=68.55 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=65.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh--h------hhcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--K------YVGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~--~------~~g~--------------- 245 (426)
|+..+.-++|+||||+|||+++-.+|... +...++++..+-+. . ..|.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 67788889999999999999999998653 33666776544110 0 0000
Q ss_pred -hH---HHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 246 -GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 246 -~~---~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.. ..+..+...... ..+.+|+||=|-++......+. +...+.++.+.+++..+..+-...++.+|++..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 00 112222223333 5667999999998754321111 111222444445554444333455777777654
No 372
>PRK05973 replicative DNA helicase; Provisional
Probab=97.47 E-value=0.0011 Score=62.66 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=30.8
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
|+.+...++|.|+||+|||+++-.++... |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 77888889999999999999999887644 6565555543
No 373
>PRK00625 shikimate kinase; Provisional
Probab=97.44 E-value=0.00011 Score=66.36 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.4
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
.|+|.|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999997665
No 374
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.44 E-value=0.0017 Score=66.83 Aligned_cols=193 Identities=12% Similarity=0.133 Sum_probs=95.8
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh---------------hhc-----chHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK---------------YVG-----EGARMVRELFQM 256 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~---------------~~g-----~~~~~v~~lf~~ 256 (426)
.+|..++|+|++|+|||+++..+|..+ +..+..+++..+... +.+ .....++..++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 457889999999999999999999876 445555554432110 011 112334455555
Q ss_pred HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE-EeCCCCCCCcc--ccCCCCcceE
Q 014332 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM-ATNRPDTLDPA--LLRPGRLDRK 333 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~-atn~~~~ld~a--l~r~gRf~~~ 333 (426)
+... .+|+||..-.+.. +......+..+.... ....+++++ ++...+.++.+ +...-.++ .
T Consensus 173 ~~~~--DvVIIDTAGr~~~---------d~~lm~El~~l~~~~----~pdevlLVvda~~gq~av~~a~~F~~~l~i~-g 236 (437)
T PRK00771 173 FKKA--DVIIVDTAGRHAL---------EEDLIEEMKEIKEAV----KPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-G 236 (437)
T ss_pred hhcC--CEEEEECCCcccc---------hHHHHHHHHHHHHHh----cccceeEEEeccccHHHHHHHHHHHhcCCCC-E
Confidence 5444 6999998766521 222222222222221 233444444 33322222211 11100111 2
Q ss_pred EEecCCCHHHHHH-HHHHHHh-cCC---------CC--CCccHHHHHHhCCCCcHHHHHHHHHHHHHH---------HHH
Q 014332 334 VEFGLPDLESRTQ-IFKIHTR-TMN---------CE--RDIRFELLARLCPNSTGADIRSVCTEAGMF---------AIR 391 (426)
Q Consensus 334 i~~~~P~~~er~~-Il~~~l~-~~~---------~~--~~v~l~~la~~t~g~sg~di~~l~~~A~~~---------A~~ 391 (426)
+-+.-.|...|.- +|..... +.+ ++ ...+.+.++.+.=|+ +|+..++..|... +.+
T Consensus 237 vIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~~~ 314 (437)
T PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDVEK 314 (437)
T ss_pred EEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444443332 2222111 111 11 123456677665453 3777777765432 111
Q ss_pred HcCCCccHHHHHHHHHHHH
Q 014332 392 ARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 392 ~~~~~It~ed~~~A~~~v~ 410 (426)
-.....|.+||.+-++.+.
T Consensus 315 ~~~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 315 MMKGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HHcCCcCHHHHHHHHHHHH
Confidence 1245689999999887764
No 375
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.0009 Score=62.78 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccC
Q 014332 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 326 (426)
Q Consensus 251 ~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r 326 (426)
+-+|..|.-..|-++++||--.- -+......+++.+.++- ...+...+|+.|...+.++|.+-.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~G----------LDl~~re~ll~~l~~~~--~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQG----------LDLIAREQLLNRLEELA--ASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcccc----------CChHHHHHHHHHHHHHh--cCCCCceEEEEEcchhhcccccce
Confidence 34667777788999999994321 24444445666665543 234456688889999888876544
No 376
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.43 E-value=0.0001 Score=66.32 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
++-++|.|+||+|||++|+.++..++.+++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 3568999999999999999999999888776655443
No 377
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.42 E-value=0.0011 Score=69.32 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=62.8
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEec-chh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIG-SEL 238 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~-~~l 238 (426)
...++++++-.+++.+.++.++.. +..-++++||+|+||||+++++.+++. ..++.+.- .++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 456888898888888888887753 223478999999999999998888764 33444421 112
Q ss_pred hhhh-----hcc-hHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 239 VQKY-----VGE-GARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 239 ~~~~-----~g~-~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
.-.. +.. ...........+....|.+|++.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1111 111 011233455566678999999999853
No 378
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.42 E-value=0.0008 Score=67.97 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc------EEEEecc---h---hhhh--------hhcchH-HHH---HHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS---E---LVQK--------YVGEGA-RMV---RELFQ 255 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~------~i~v~~~---~---l~~~--------~~g~~~-~~v---~~lf~ 255 (426)
..+..++|.||||+|||++++.+++..... ++.+... + +... ..+++. ..+ ..+.+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 455669999999999999999999975322 3333211 1 1111 112221 111 12222
Q ss_pred HH----HcCCCEEEEEeCCCcccCCccC--------CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 256 MA----RSKKACIVFFDEVDAIGGARFD--------DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 256 ~a----~~~~p~Il~iDEiD~l~~~r~~--------~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
.| ..+...+|||||++.++..... .+.|-++.....+-.|+..-......+.+.+|+|.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~Tv 316 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 316 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEE
Confidence 22 2345569999999988522110 11233555555556666655444445666666654
No 379
>PRK14532 adenylate kinase; Provisional
Probab=97.41 E-value=0.00011 Score=66.75 Aligned_cols=37 Identities=16% Similarity=0.434 Sum_probs=29.8
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
.++|.||||+||||+|+.+|+.++..++ +..+++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHHH
Confidence 4899999999999999999999987664 555555543
No 380
>PRK13949 shikimate kinase; Provisional
Probab=97.40 E-value=0.00012 Score=65.81 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+.++|.||||+|||++++.+|+.++.+|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999988765
No 381
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00017 Score=64.43 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG 244 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g 244 (426)
...++|.|++|+||||+.+++|+.++.+|+-. ..++.+..|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~--D~~Ie~~~g 42 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDT--DQEIEKRTG 42 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccc--hHHHHHHHC
Confidence 35689999999999999999999999999744 444444333
No 382
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.40 E-value=0.00084 Score=61.53 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc--CC--cEEEEecchh------------------hh-hhhcc---------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DA--CFIRVIGSEL------------------VQ-KYVGE--------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l--~~--~~i~v~~~~l------------------~~-~~~g~--------- 245 (426)
.+.++..+.|.||+|+|||+|++.++... .. --+.+++..+ .. ..+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 35677889999999999999999999875 21 1111211111 00 00000
Q ss_pred ---hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 246 ---GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 246 ---~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
+...-+-.+..|....|.++++||-..-. +......+.+++..+. .. +..+|++|+.+.
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGL----------DSSSALQVMSLLRRLA---DT-GRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEecCch
Confidence 01111223444555778899999976532 6677777888887753 12 445777777653
No 383
>PRK10436 hypothetical protein; Provisional
Probab=97.39 E-value=0.00084 Score=69.64 Aligned_cols=95 Identities=16% Similarity=0.284 Sum_probs=63.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEe-cchh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVI-GSEL 238 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~-~~~l 238 (426)
+..++++++-.+.+.+.+++++.. +..-+|++||+|+||||++.++.++++ ..++.+. ..++
T Consensus 193 ~~~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 193 QALDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 345788898888888888888753 345589999999999999988877763 2333332 1121
Q ss_pred h-----hhhhcc-hHHHHHHHHHHHHcCCCEEEEEeCCC
Q 014332 239 V-----QKYVGE-GARMVRELFQMARSKKACIVFFDEVD 271 (426)
Q Consensus 239 ~-----~~~~g~-~~~~v~~lf~~a~~~~p~Il~iDEiD 271 (426)
. +..++. ........+..+....|.+|++.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 111111 11234556667777899999999985
No 384
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.39 E-value=0.00061 Score=67.20 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=64.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh-h----h---hcch--------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ-K----Y---VGEG-------------- 246 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~-~----~---~g~~-------------- 246 (426)
|+..+.-++++||||+|||+++-.+|... +...++++..+-+. . . .|-.
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 67777889999999999999999998653 33677777654110 0 0 0100
Q ss_pred --H---HHHHHHHHHHHcC--CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 247 --A---RMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 247 --~---~~v~~lf~~a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
. ..+..+.+..... .+.+|+||-+-.+......+. +.....++.+.+++..+..+....++.||++..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 0122233333443 367999999888754321111 111222333444444443333455676776654
No 385
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00063 Score=63.68 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+..|....|.+|++||.-+.. |..+|..++.+|..+. ...+..+|+.|+..
T Consensus 152 IARAL~~~PklLIlDEptSaL----------D~siQa~IlnlL~~l~---~~~~lt~l~IsHdl 202 (252)
T COG1124 152 IARALIPEPKLLILDEPTSAL----------DVSVQAQILNLLLELK---KERGLTYLFISHDL 202 (252)
T ss_pred HHHHhccCCCEEEecCchhhh----------cHHHHHHHHHHHHHHH---HhcCceEEEEeCcH
Confidence 444556778999999976653 7788999998888775 34456677777754
No 386
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.0014 Score=59.98 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=63.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchh-----------------hhh-hhcc----------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSEL-----------------VQK-YVGE---------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l-----------------~~~-~~g~---------- 245 (426)
.+.+...+.|.||+|+|||+|++.++... ..--+.+++..+ ... .+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG 108 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhc
Confidence 34567789999999999999999999632 111122222111 000 0000
Q ss_pred --hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 246 --GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 246 --~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
+...-+-.+..|....|.++++||-..-. +......+.+++..+. . .+..+|++|+.++
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP~~~L----------D~~~~~~l~~~l~~~~---~-~~~tiiivtH~~~ 169 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGL----------DSQAAYNIVRFLKKLA---D-SGQAILCTIHQPS 169 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCC----------CHHHHHHHHHHHHHHH---H-cCCEEEEEEcCCh
Confidence 01111223444555778899999976542 6677777888877654 1 2456778887754
No 387
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00013 Score=63.10 Aligned_cols=32 Identities=38% Similarity=0.651 Sum_probs=29.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
..++|++|-||||||+++..+|..++.++|.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 34799999999999999999999999998765
No 388
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.38 E-value=0.00076 Score=62.13 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=63.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r 277 (426)
|.+....++|.|+.|+|||++.+.|+.+. +.-..... ........+... -|+.+||++.+.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~------~~kd~~~~l~~~------~iveldEl~~~~--- 108 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF------DDKDFLEQLQGK------WIVELDELDGLS--- 108 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccC------CCcHHHHHHHHh------HheeHHHHhhcc---
Confidence 55556679999999999999999996652 11111100 011112122111 289999999984
Q ss_pred cCCCCCCChHHHHHHHHHHHHh-cCC---------CCCCCeEEEEEeCCCCCCC-ccccCCCCcceEEEecC
Q 014332 278 FDDGVGGDNEVQRTMLEIVNQL-DGF---------DARGNIKVLMATNRPDTLD-PALLRPGRLDRKVEFGL 338 (426)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l-~~~---------~~~~~v~vI~atn~~~~ld-~al~r~gRf~~~i~~~~ 338 (426)
..-...+-.++..- +.+ ......++|+|||..+-|. +.=-| || ..+++..
T Consensus 109 --------k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 109 --------KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 22234555555432 111 1123577899999987553 34445 66 4565554
No 389
>PTZ00035 Rad51 protein; Provisional
Probab=97.37 E-value=0.00098 Score=66.52 Aligned_cols=116 Identities=14% Similarity=0.197 Sum_probs=66.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh---------hhhc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ---------KYVG--------------- 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~---------~~~g--------------- 244 (426)
|+....-+.|+||||+|||+++..++... +...++++...-+. .+--
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 78888889999999999999999987532 34555666543211 0000
Q ss_pred chHH---HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 245 EGAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 245 ~~~~---~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
..+. .+..+........+.+|+||-|-+++.....+ .+...+.++.+.+++..+..+....++.||++.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSG-RGELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccC-cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 0011 11122222334667899999999876432211 111223344566666655544445677666553
No 390
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.37 E-value=0.00077 Score=62.06 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
+.-+++.|+||+|||++|+.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999988755
No 391
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.37 E-value=0.013 Score=59.54 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHH--HHHHHhcCCcEEEEecchhhhh-----------
Q 014332 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLA--RAVANRTDACFIRVIGSELVQK----------- 241 (426)
Q Consensus 175 ~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~la--ralA~~l~~~~i~v~~~~l~~~----------- 241 (426)
+.+++|+.++.. .+..-|+++||.|+||+.|+ +++..+ ...+.++|..+...
T Consensus 3 e~~~~L~~wL~e-------------~~~TFIvV~GPrGSGK~elV~d~~L~~r--~~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 3 EAIEQLKSWLNE-------------NPNTFIVVQGPRGSGKRELVMDHVLKDR--KNVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred hHHHHHHHHHhc-------------CCCeEEEEECCCCCCccHHHHHHHHhCC--CCEEEEEChHhhhccChHHHHHHHH
Confidence 456778888754 34556899999999999999 555554 33777888766441
Q ss_pred -------------------------hhcc-------hHHHHHHHHHHH-----------H-------------------c
Q 014332 242 -------------------------YVGE-------GARMVRELFQMA-----------R-------------------S 259 (426)
Q Consensus 242 -------------------------~~g~-------~~~~v~~lf~~a-----------~-------------------~ 259 (426)
..|. .+..++.++... + .
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 0121 133344444321 1 1
Q ss_pred CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC---CCCCccccCCCCcceEEEe
Q 014332 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEF 336 (426)
Q Consensus 260 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~ 336 (426)
..| ||+||.+..-.. .+..+...+.++-..+- ..+---||+.|+.. ..|..+|-. |.-+.|.+
T Consensus 148 ~~P-VVVIdnF~~k~~--------~~~~iy~~laeWAa~Lv---~~nIAHVIFlT~dv~~~k~LskaLPn--~vf~tI~L 213 (431)
T PF10443_consen 148 RRP-VVVIDNFLHKAE--------ENDFIYDKLAEWAASLV---QNNIAHVIFLTDDVSYSKPLSKALPN--RVFKTISL 213 (431)
T ss_pred cCC-EEEEcchhccCc--------ccchHHHHHHHHHHHHH---hcCccEEEEECCCCchhhhHHHhCCC--CceeEEee
Confidence 145 999999865321 13445555555443332 22223356666543 556667744 77789999
Q ss_pred cCCCHHHHHHHHHHHHhcC
Q 014332 337 GLPDLESRTQIFKIHTRTM 355 (426)
Q Consensus 337 ~~P~~~er~~Il~~~l~~~ 355 (426)
...+.+.-+.++..++...
T Consensus 214 ~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 214 SDASPESAKQYVLSQLDED 232 (431)
T ss_pred cCCCHHHHHHHHHHHhccc
Confidence 9998888888887777543
No 392
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.0013 Score=62.65 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.0
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
|-+.......+..++.. ..-+++.||+|||||+||.++|.+
T Consensus 57 i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 57 ILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 55666666666665532 237999999999999999999984
No 393
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.36 E-value=0.00015 Score=63.27 Aligned_cols=28 Identities=36% Similarity=0.643 Sum_probs=24.9
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
++|+|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 394
>PRK06217 hypothetical protein; Validated
Probab=97.36 E-value=0.00016 Score=65.69 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=28.0
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
.|+|.|+||+||||+++++++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999887654
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.35 E-value=0.0016 Score=60.00 Aligned_cols=101 Identities=23% Similarity=0.387 Sum_probs=57.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CC--cEEEEecchhh-----hhh---hc----------chHHHHHHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DA--CFIRVIGSELV-----QKY---VG----------EGARMVRELFQMAR 258 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~--~~i~v~~~~l~-----~~~---~g----------~~~~~v~~lf~~a~ 258 (426)
|+-++|.||+|+||||.+--+|..+ +. .++..+..... ..| .| +.....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5668999999999999999998865 33 34444432110 001 01 12334555666666
Q ss_pred cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.....+|+||=..... .+.+....+..+++.+ ....+.++++++
T Consensus 81 ~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~----~~~~~~LVlsa~ 124 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL----NPDEVHLVLSAT 124 (196)
T ss_dssp HTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH----SSSEEEEEEEGG
T ss_pred hcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc----CCccceEEEecc
Confidence 6556699999765431 1344455555666654 234455555544
No 396
>PRK14531 adenylate kinase; Provisional
Probab=97.34 E-value=0.00017 Score=65.52 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=27.3
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
..++++||||+||||+++.+|..+|.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3589999999999999999999999877653
No 397
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0046 Score=62.99 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCcc-ChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhh-------
Q 014332 174 KEQIEKMREVVELPML-HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQK------- 241 (426)
Q Consensus 174 ~~~~~~l~~~i~~~l~-~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~------- 241 (426)
+.....+.+.+...+. .+..+...+...+..++|.||+|+||||++..+|... |..+..+++..+...
T Consensus 194 ~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~ 273 (432)
T PRK12724 194 HNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKR 273 (432)
T ss_pred HHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHH
Confidence 3444555555543221 1222222223345568999999999999999999754 334444444332111
Q ss_pred h---hcc---hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 242 Y---VGE---GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 242 ~---~g~---~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
| .|- .......+...+......+|+||=.-... .+......+..++.......+...++|+-+|.
T Consensus 274 yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~---------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 274 YADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSH---------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCc---------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 1 010 11123334444444556789998533221 13333344444444332111223455555555
Q ss_pred CCCCCCc
Q 014332 316 RPDTLDP 322 (426)
Q Consensus 316 ~~~~ld~ 322 (426)
..+.+..
T Consensus 345 ~~~~~~~ 351 (432)
T PRK12724 345 SYHHTLT 351 (432)
T ss_pred CHHHHHH
Confidence 5544443
No 398
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.32 E-value=0.00018 Score=63.80 Aligned_cols=32 Identities=41% Similarity=0.640 Sum_probs=26.5
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
++|.||+|+|||++|+.+++.++..++ +...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999986664 44443
No 399
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.32 E-value=0.0012 Score=58.77 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=55.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---------------CCcEEEEecch-hhhhhhcchHHHHHHHHH-HHHc--CC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---------------DACFIRVIGSE-LVQKYVGEGARMVRELFQ-MARS--KK 261 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---------------~~~~i~v~~~~-l~~~~~g~~~~~v~~lf~-~a~~--~~ 261 (426)
.++..+++||.|+|||++.++++--+ +.+.-.+...- +...-...+.+....+-. .+.. ..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~ 99 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKP 99 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCC
Confidence 34689999999999999999986532 21111111000 000001112222111111 1121 36
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
|+++++||...-. +......+...+.++. . . +..+|++|+.++..
T Consensus 100 ~~llllDEp~~gl----------d~~~~~~l~~~l~~~~--~-~-~~~vii~TH~~~~~ 144 (162)
T cd03227 100 RPLYILDEIDRGL----------DPRDGQALAEAILEHL--V-K-GAQVIVITHLPELA 144 (162)
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHHHHHHH--h-c-CCEEEEEcCCHHHH
Confidence 7899999987643 4444445555544432 1 2 45688888876543
No 400
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.31 E-value=0.0014 Score=62.50 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
++++.-+-|.||.|||||||.|++++-+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4556678999999999999999999854
No 401
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.31 E-value=0.0022 Score=59.40 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCCCcceEecCCCChHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~ 224 (426)
..++-++|+||+|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446699999999999999999974
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.31 E-value=0.0018 Score=67.97 Aligned_cols=111 Identities=25% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh----cCCcEEEEecchhhhhh--------------h----------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIGSELVQKY--------------V---------------- 243 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~----l~~~~i~v~~~~l~~~~--------------~---------------- 243 (426)
|+.+++.+|++||||||||++|..++.+ .+.+.+++...+-...+ .
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Confidence 7888999999999999999999998543 25566666543221110 0
Q ss_pred ------cchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 244 ------GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 244 ------g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
-.....+..+........+..|+||=+..+..... ......+.+..++..+. ..++.+|++++..
T Consensus 97 ~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~-----~~~~~r~~l~~Li~~L~----~~g~TvLLtsh~~ 167 (484)
T TIGR02655 97 QDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD-----AVSVVRREIFRLVARLK----QIGVTTVMTTERI 167 (484)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC-----chHHHHHHHHHHHHHHH----HCCCEEEEEecCc
Confidence 01122334455555666777899997766642110 01233445556666553 2355566666543
No 403
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.31 E-value=0.00018 Score=65.50 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=28.7
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
|+|+||||+|||++|+.+|..++..++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 789999999999999999999987665 44555444
No 404
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.31 E-value=0.00058 Score=67.54 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=66.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc------C---CcEEEEecchhhhh--h------hcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT------D---ACFIRVIGSELVQK--Y------VGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l------~---~~~i~v~~~~l~~~--~------~g~--------------- 245 (426)
|+.+..-+.++||||+|||+++..+|... + ...++++..+.+.. . .+-
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 77888889999999999999999988521 1 35567766552111 0 000
Q ss_pred -hHH---HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 246 -GAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 246 -~~~---~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
... .+..+........+.+|+||-+-+++.....+. +.....+..+.+++..+..+....++.||+|..
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNq 244 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQ 244 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 011 112222223345678999999998864322111 111123444556666665544456777776643
No 405
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.30 E-value=0.002 Score=60.50 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.1
Q ss_pred CCCCcceEecCCCChHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~ 224 (426)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999987
No 406
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.30 E-value=0.00096 Score=71.23 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC---cEEEEecc-hh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGS-EL 238 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~---~~i~v~~~-~l 238 (426)
+..++++++-..++.+.+.+++.. +...+|++||+|+||||+..++.+.++. .++.+.-+ ++
T Consensus 291 ~~~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 291 AQLDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred ccCCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 345788898888888888888753 3345789999999999999988887642 34333211 11
Q ss_pred h-----hhhhcc-hHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 239 V-----QKYVGE-GARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 239 ~-----~~~~g~-~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
. +..+.. ........++.+....|.+|++.||-.
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 1 111111 112345566777789999999999853
No 407
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.29 E-value=0.0002 Score=61.93 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=27.7
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+.+.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 408
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00019 Score=62.97 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=25.9
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
+-+.|||||||||+|+.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999874
No 409
>PLN02200 adenylate kinase family protein
Probab=97.29 E-value=0.00045 Score=65.37 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=33.0
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
+.|.-+++.||||+|||++|+.+|..++.+ .++..+++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 445678999999999999999999999865 46666776543
No 410
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.28 E-value=0.0028 Score=58.04 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
-+.++..+.|.||+|+|||+|+++++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 35677789999999999999999999864
No 411
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.28 E-value=0.0017 Score=68.16 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=55.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhh------c----------------------ch
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV------G----------------------EG 246 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~------g----------------------~~ 246 (426)
|+.+...+|+.||||+|||+|+-.++... |-+.+++...+-...+. | ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 78888899999999999999999998854 55666665544322210 0 01
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3445566667777788899999998774
No 412
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.27 E-value=0.00047 Score=62.23 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=37.4
Q ss_pred HHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 254 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
...|--+.|.+|+-||=-. .-+++....++++++++. ..+..|++||+..+.++
T Consensus 148 IARAiV~~P~vLlADEPTG----------NLDp~~s~~im~lfeein----r~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 148 IARAIVNQPAVLLADEPTG----------NLDPDLSWEIMRLFEEIN----RLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHccCCCeEeecCCCC----------CCChHHHHHHHHHHHHHh----hcCcEEEEEeccHHHHH
Confidence 3344557888999998422 237888888888888875 34567888888755444
No 413
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.27 E-value=0.00085 Score=58.87 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=29.0
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~ 239 (426)
++|+|+||+|||++|+.++..+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999988 6666777765544
No 414
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.26 E-value=0.0005 Score=69.37 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=46.3
Q ss_pred CcceEecCCCChHHHHHHHHHHhcC-----CcEEEEec-chhh-----------hhhhcchHHHHHHHHHHHHcCCCEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIG-SELV-----------QKYVGEGARMVRELFQMARSKKACIV 265 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~-----~~~i~v~~-~~l~-----------~~~~g~~~~~v~~lf~~a~~~~p~Il 265 (426)
..+|++||+|+||||++++++.... ...+.+.- .++. +..+|............+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999988762 33444422 1221 11122222234556677778899999
Q ss_pred EEeCCCc
Q 014332 266 FFDEVDA 272 (426)
Q Consensus 266 ~iDEiD~ 272 (426)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999853
No 415
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.26 E-value=0.00064 Score=67.09 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+.++..|+|+|+||||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 467788999999999999999999999999998443
No 416
>PRK06547 hypothetical protein; Provisional
Probab=97.26 E-value=0.00023 Score=64.11 Aligned_cols=35 Identities=37% Similarity=0.378 Sum_probs=30.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
..+.-|++.|++|+|||++|+.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45677999999999999999999999988877554
No 417
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.26 E-value=0.0018 Score=59.57 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhh--------h---hh-------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQ--------K---YV------------------- 243 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~--------~---~~------------------- 243 (426)
.+.++..+.|.||+|+|||+|++.++... ..--+.+++..+.. . |+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 35677889999999999999999999862 11112232221100 0 00
Q ss_pred -cc--hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 244 -GE--GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 244 -g~--~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
.. +...-+-.+..+....|.++++||--.- -+......+.+++..+.. . ...+|++|+.++
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~L~~~~~---~-~~tiii~sh~~~ 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG----------LDIDALRLVAEVINKLRE---E-GKSVLIITHYQR 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHH
Confidence 00 0111223344555678889999996543 266677777788776531 2 346777887765
No 418
>PRK14530 adenylate kinase; Provisional
Probab=97.26 E-value=0.00024 Score=66.17 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.9
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.++|.||||+||||+++.+|+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 589999999999999999999999877644
No 419
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.24 E-value=0.00028 Score=66.54 Aligned_cols=37 Identities=22% Similarity=0.569 Sum_probs=30.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
|..++|.||||+||||+|+.+|+.++.+++.+ .+++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 44599999999999999999999999877654 44443
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.24 E-value=0.0056 Score=59.29 Aligned_cols=74 Identities=22% Similarity=0.395 Sum_probs=45.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh---hc----------chHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY---VG----------EGARMVRELFQM 256 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-------~~---~g----------~~~~~v~~lf~~ 256 (426)
.+++.++|.||+|+|||+++..+|..+ +..+.-+++..+.. .| .| .....+...+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999866 44555555442211 01 00 112333344445
Q ss_pred HHcCCCEEEEEeCCCcc
Q 014332 257 ARSKKACIVFFDEVDAI 273 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l 273 (426)
+......+|+||=.-..
T Consensus 150 ~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHCCCCEEEEeCCCCC
Confidence 55555678999876554
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.24 E-value=0.0015 Score=61.10 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=40.7
Q ss_pred HHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcce
Q 014332 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 332 (426)
Q Consensus 253 lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~ 332 (426)
.+..|-...|.+|+-||=-.- -+.+....++.++..+. ...+..||+.|+.+ .+.. ++|+
T Consensus 152 AIARAL~~~P~iilADEPTgn----------LD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~-----~lA~--~~dr 211 (226)
T COG1136 152 AIARALINNPKIILADEPTGN----------LDSKTAKEVLELLRELN---KERGKTIIMVTHDP-----ELAK--YADR 211 (226)
T ss_pred HHHHHHhcCCCeEEeeCcccc----------CChHHHHHHHHHHHHHH---HhcCCEEEEEcCCH-----HHHH--hCCE
Confidence 344455678899999994322 24555566677776653 23456788888854 3444 6777
Q ss_pred EEEec
Q 014332 333 KVEFG 337 (426)
Q Consensus 333 ~i~~~ 337 (426)
.|.+.
T Consensus 212 ~i~l~ 216 (226)
T COG1136 212 VIELK 216 (226)
T ss_pred EEEEe
Confidence 76664
No 422
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00033 Score=66.20 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.+...++|.||+|+|||||++.++.-+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 45667789999999999999999999854
No 423
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.23 E-value=0.0015 Score=64.65 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=47.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEE-ecchhhh---h---hhcchHHHHHHHHHHHHcCCCEEEEEe
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV-IGSELVQ---K---YVGEGARMVRELFQMARSKKACIVFFD 268 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v-~~~~l~~---~---~~g~~~~~v~~lf~~a~~~~p~Il~iD 268 (426)
..+++++.|++|+|||+++++++... ...++.+ +..++.- . +.....-.+.+++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46789999999999999999999863 1222222 1222210 0 011112235678888888999999999
Q ss_pred CCC
Q 014332 269 EVD 271 (426)
Q Consensus 269 EiD 271 (426)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 985
No 424
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00095 Score=60.97 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=21.0
Q ss_pred ceEecCCCChHHHHHHHHHHhc
Q 014332 205 VLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l 226 (426)
++|+|+||+|||++|+.+|+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999987
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.00049 Score=62.68 Aligned_cols=72 Identities=26% Similarity=0.367 Sum_probs=46.5
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecc-hhhhh---hh----------cchHHHHHHHHHHHHcCCCE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-ELVQK---YV----------GEGARMVRELFQMARSKKAC 263 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~-~l~~~---~~----------g~~~~~v~~lf~~a~~~~p~ 263 (426)
.....++|.||+|+|||+++++++.... ...+.+... ++... .+ +.....+.+++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 4567899999999999999999998653 222222211 11100 00 11123355677777778899
Q ss_pred EEEEeCCC
Q 014332 264 IVFFDEVD 271 (426)
Q Consensus 264 Il~iDEiD 271 (426)
++++.|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999984
No 426
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.21 E-value=0.00084 Score=64.02 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=27.8
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
|+|+|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 456666665444
No 427
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0032 Score=63.61 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh-------hhh-
Q 014332 174 KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QKY- 242 (426)
Q Consensus 174 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~-------~~~- 242 (426)
...++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++.... ..|
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 455555555554333222111 1235789999999999999999999866 3344444443221 111
Q ss_pred --------hcchHHHHHHHHHHHHc-CCCEEEEEeCCCcc
Q 014332 243 --------VGEGARMVRELFQMARS-KKACIVFFDEVDAI 273 (426)
Q Consensus 243 --------~g~~~~~v~~lf~~a~~-~~p~Il~iDEiD~l 273 (426)
....+..+......+.. ....+||||-.-..
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 11223344455555443 23569999976553
No 428
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.21 E-value=0.00089 Score=66.81 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=69.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchh---------hhhhhcc--------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL---------VQKYVGE-------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l---------~~~~~g~-------------- 245 (426)
|+.+..-+.++|+||+|||+++..+|-.. +...++++...- ...+--.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 67778889999999999999999887431 235677766541 1110000
Q ss_pred -hHH---HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 246 -GAR---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 246 -~~~---~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.+. .+..+........+.+|+||-|-+++.....+ .+.....+..|.+++..+..+....++.||+|..-
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~-~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv 272 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSG-RGELSARQMHLGKFLRSLQRLADEFGVAVVITNQV 272 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCE
Confidence 011 12222222345678899999999886432111 11122334456677766665555667777776543
No 429
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.21 E-value=0.00034 Score=62.94 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999876653
No 430
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.21 E-value=0.0022 Score=58.04 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=63.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchh-------------------------hh-hhhcc----
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSEL-------------------------VQ-KYVGE---- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l-------------------------~~-~~~g~---- 245 (426)
.+.++..+.|.||+|+|||+|++.++..... --+.+++..+ .. ..+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 3466778999999999999999999986421 1111221110 00 00000
Q ss_pred -----hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 246 -----GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 246 -----~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
+...-+-.+..|-...|.++++||--.- -+......+.+++..+.. . +..+|++|+..+
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 165 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRG----------VDVGAKAEIYRLIRELAD---A-GKAVLLISSELD 165 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEECCCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 0011122344555578889999996553 267777788888877631 2 356778887654
No 431
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.0031 Score=58.33 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=25.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677789999999999999999999863
No 432
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.21 E-value=0.00048 Score=68.59 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=48.4
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEE-ecchhhh-----------hh--hcchHHHHHHHHHHHHcCCCE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRV-IGSELVQ-----------KY--VGEGARMVRELFQMARSKKAC 263 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v-~~~~l~~-----------~~--~g~~~~~v~~lf~~a~~~~p~ 263 (426)
...++++++||+|+|||+++++++..... .++.+ +..++.- .. .|...-...+++..+....|.
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 35678999999999999999999987642 22222 1112210 00 111222356788888899999
Q ss_pred EEEEeCCC
Q 014332 264 IVFFDEVD 271 (426)
Q Consensus 264 Il~iDEiD 271 (426)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999985
No 433
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0015 Score=65.91 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+..+..++|.||+|+||||++..+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999863
No 434
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.20 E-value=0.00097 Score=65.97 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEe-cchhhhh------hhcchHHHHHHHHHHHHcCCCEEEEEe
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI-GSELVQK------YVGEGARMVRELFQMARSKKACIVFFD 268 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~-~~~l~~~------~~g~~~~~v~~lf~~a~~~~p~Il~iD 268 (426)
...++++.|++|+|||+++++++... +..++.+. ..++.-. +.....-....++..+....|..|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 35689999999999999999999875 22333332 2222211 001112235567778888999999999
Q ss_pred CCC
Q 014332 269 EVD 271 (426)
Q Consensus 269 EiD 271 (426)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 984
No 435
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.20 E-value=0.0013 Score=58.63 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.1
Q ss_pred CcceEecCCCChHHH-HHHHHHHhc
Q 014332 203 KGVLCYGPPGTGKTL-LARAVANRT 226 (426)
Q Consensus 203 ~~vLL~GppGtGKT~-laralA~~l 226 (426)
+.+++.||+|+|||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 689999999999999 555555544
No 436
>PRK13946 shikimate kinase; Provisional
Probab=97.19 E-value=0.00028 Score=64.17 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
++.|+|.|++|||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999987665
No 437
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.19 E-value=0.00033 Score=62.58 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.4
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
..++|.|++|+|||++++.+|+.++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987543
No 438
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.18 E-value=0.0038 Score=56.54 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=57.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEec-chh---------------------------hh----hhhcchHHHHH
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG-SEL---------------------------VQ----KYVGEGARMVR 251 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~-~~l---------------------------~~----~~~g~~~~~v~ 251 (426)
-.+++||.|+|||.+..|++-.++..-..... ..+ .+ .....+++. +
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~-r 102 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKS-L 102 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHH-H
Confidence 57899999999999999997654322111100 000 00 001111221 2
Q ss_pred HHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014332 252 ELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (426)
Q Consensus 252 ~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 319 (426)
-.+..+. ...|.++++||.+.-. +......+.+++..+. .. +..+|++|+.++.
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~L----------D~~~~~~i~~~L~~~~---~~-g~tiIiiSH~~~~ 160 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAAL----------DPTNRRRVSDMIKEMA---KH-TSQFIVITLKKEM 160 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEECCHHH
Confidence 2222221 2567899999998754 5556666767776653 12 3567888887643
No 439
>PRK06696 uridine kinase; Validated
Probab=97.17 E-value=0.00079 Score=63.14 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~ 239 (426)
..+.-|.+.|++|+||||+|+.|+..+ |.+++.+.+.++.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346679999999999999999999988 6677776666553
No 440
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.17 E-value=0.0062 Score=60.30 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=44.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh--------h----c-chHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY--------V----G-EGARMVRELFQM 256 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-------~~--------~----g-~~~~~v~~lf~~ 256 (426)
.++.-++|.||+|+||||++..+|..+ +..+..+++..+.. .| + + .....+.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 356779999999999999999999876 34444444432110 00 0 0 111223333445
Q ss_pred HHcCCCEEEEEeCCCcc
Q 014332 257 ARSKKACIVFFDEVDAI 273 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l 273 (426)
+......+|+||=.-.+
T Consensus 192 ~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 192 AKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHhCCCCEEEEeCCCCC
Confidence 55566679999976554
No 441
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0033 Score=56.73 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=65.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhh---------hh-----------hhc-----------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV---------QK-----------YVG----------- 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~---------~~-----------~~g----------- 244 (426)
.+.+...+.|.||+|+|||+|+++++..... --+.+++..+. .. +.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 3456677999999999999999999975421 11222221110 00 000
Q ss_pred chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 245 EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 245 ~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.+...-+-.+..|....|.++++||--.- -+...+..+.+++.++. ...+..+|++|+.+..+
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQ---AQLGITVVLVTHDLDEA 164 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 01122233455566678889999996553 36777788888887764 12234677777765433
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.17 E-value=0.0051 Score=55.03 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=26.2
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
+++.||||+|||++++.+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6899999999999999999865 5566666655
No 443
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.16 E-value=0.00057 Score=67.40 Aligned_cols=75 Identities=20% Similarity=0.338 Sum_probs=48.8
Q ss_pred hCCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEe-cchhhhh---h---------hcchHHHHHHHHHHHHcCC
Q 014332 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVI-GSELVQK---Y---------VGEGARMVRELFQMARSKK 261 (426)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~-~~~l~~~---~---------~g~~~~~v~~lf~~a~~~~ 261 (426)
+-+....++++.||+|+|||+++++++..... ..+.+. ..++.-. . .+...-.+.+++..+....
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 34567789999999999999999999987632 222221 1111100 0 0111223556777778889
Q ss_pred CEEEEEeCCC
Q 014332 262 ACIVFFDEVD 271 (426)
Q Consensus 262 p~Il~iDEiD 271 (426)
|.+|++||+-
T Consensus 219 pd~ii~gE~r 228 (308)
T TIGR02788 219 PDRIILGELR 228 (308)
T ss_pred CCeEEEeccC
Confidence 9999999985
No 444
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.15 E-value=0.0022 Score=68.94 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45788889999999999999999999865
No 445
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.15 E-value=0.00094 Score=64.35 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCC----cEEEEe-cchh---------hhhhhcchHHHHHHHHHHHHcCCCEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVI-GSEL---------VQKYVGEGARMVRELFQMARSKKACIVF 266 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~----~~i~v~-~~~l---------~~~~~g~~~~~v~~lf~~a~~~~p~Il~ 266 (426)
+..-||++||+|+||||..-++-.+.+. +.+.+. +-++ .+.-+|.-.......++.|....|.||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 3344888999999999999999887753 233331 1122 2223555445555666777788999999
Q ss_pred EeCCCc
Q 014332 267 FDEVDA 272 (426)
Q Consensus 267 iDEiD~ 272 (426)
+-|+--
T Consensus 204 vGEmRD 209 (353)
T COG2805 204 VGEMRD 209 (353)
T ss_pred Eecccc
Confidence 999743
No 446
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.15 E-value=0.002 Score=63.08 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=37.5
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
.|-.+.|.++|+||--. +-|+.....+.+++..+. ..++..|+++|+.++.+.
T Consensus 149 ~aL~~~P~lliLDEPt~----------GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~~ 201 (293)
T COG1131 149 LALLHDPELLILDEPTS----------GLDPESRREIWELLRELA---KEGGVTILLSTHILEEAE 201 (293)
T ss_pred HHHhcCCCEEEECCCCc----------CCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHHH
Confidence 34457789999999533 347778888888887764 344478899998875443
No 447
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.14 E-value=0.0026 Score=68.27 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
-++++..+.|.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35677889999999999999999999864
No 448
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.14 E-value=0.0017 Score=65.53 Aligned_cols=103 Identities=17% Similarity=0.358 Sum_probs=60.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCC---cEEEEecchhhhhhh-cchHHHHHHHHHH-------------------
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGSELVQKYV-GEGARMVRELFQM------------------- 256 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~---~~i~v~~~~l~~~~~-g~~~~~v~~lf~~------------------- 256 (426)
..+..+++.||.|||||++.+++.+.+.. .++.+....+....+ |. ..++..|..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G--~T~hs~f~i~~~~~~~~~~~~~~~~~~~ 97 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGG--RTIHSFFGIPINNNEKSQCKISKNSRLR 97 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCC--cchHHhcCccccccccccccccccchhh
Confidence 46778999999999999999999987633 344444333333322 11 111222210
Q ss_pred HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC----CCCCCeEEEEEeC
Q 014332 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF----DARGNIKVLMATN 315 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~----~~~~~v~vI~atn 315 (426)
.....-.+|+|||+-.+ +......+...|..+.+- .+-+++.||+...
T Consensus 98 ~~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 98 ERLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred hhhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 11122359999999877 455555665556555432 2345677776654
No 449
>PRK14528 adenylate kinase; Provisional
Probab=97.14 E-value=0.00035 Score=63.67 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=28.4
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
.+++.||||+|||++++.+|..++.+.+.+ .+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~--~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST--GDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC--CHHH
Confidence 489999999999999999999999877543 4443
No 450
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00045 Score=62.54 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=23.8
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
.++|.||||+||||+|+.+|+.++.+-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4799999999999999999999555443
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.13 E-value=0.00072 Score=63.02 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=28.5
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
.|+++||||+|||++++.+|..++.+.+. ..+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999976655 444443
No 452
>PRK13764 ATPase; Provisional
Probab=97.12 E-value=0.00052 Score=73.00 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCC---cEEEE-ecchh-----hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRV-IGSEL-----VQKYVGEGARMVRELFQMARSKKACIVFFDEVD 271 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~---~~i~v-~~~~l-----~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD 271 (426)
...++|++||||+||||++++++..+.. .+..+ +..++ +..+.. ...........+....|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 4678999999999999999999987642 22222 11122 111110 00011222233345779999999975
Q ss_pred c
Q 014332 272 A 272 (426)
Q Consensus 272 ~ 272 (426)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 4
No 453
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.11 E-value=0.00041 Score=62.70 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=27.5
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
-+++.||||+||||+++.++..+|... ++..+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 588999999999999999999987654 4444444
No 454
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.11 E-value=0.00038 Score=64.60 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=28.1
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
|++.||||+|||++|+.+|..++.+.+. ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999877665 344443
No 455
>PRK02496 adk adenylate kinase; Provisional
Probab=97.10 E-value=0.00042 Score=62.84 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=26.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+++.||||+|||++++.+|..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 378999999999999999999998776543
No 456
>PRK14527 adenylate kinase; Provisional
Probab=97.10 E-value=0.00037 Score=63.63 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=28.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..+.-++++||||+|||++|+.+|+.++...+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 346679999999999999999999999876554
No 457
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.09 E-value=0.031 Score=58.54 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=88.0
Q ss_pred CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCC
Q 014332 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340 (426)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~ 340 (426)
.|+|+++.+++.++. ++.+.+.+..+...+. .....+||.+.+ ..+++.|.+ +-..+++|+|+
T Consensus 81 ~~~~~vl~d~h~~~~---------~~~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~ 143 (489)
T CHL00195 81 TPALFLLKDFNRFLN---------DISISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPT 143 (489)
T ss_pred CCcEEEEecchhhhc---------chHHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcC
Confidence 368999999999973 4567777777766554 234455555542 456666764 44688999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 341 LESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 341 ~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
.+++..+++.+....+.. .+-+++.+++.+.|+|..+++.++..+.. ....++.+++...++
T Consensus 144 ~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~ 206 (489)
T CHL00195 144 ESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPLILE 206 (489)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHHHHH
Confidence 999999998887654443 34567889999999999999998876432 223466666554443
No 458
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.09 E-value=0.0019 Score=63.56 Aligned_cols=137 Identities=25% Similarity=0.310 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHH
Q 014332 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVR 251 (426)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~ 251 (426)
|..+.+.-+.+++-..+... ....+.++|+|+.|+|||++++.+..-+|...+....+...... +..
T Consensus 53 ~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~----- 119 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH----- 119 (304)
T ss_pred CCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC-----
Confidence 44556777777776644431 23456799999999999999999998887665443333333321 110
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC----------CCCCCCeEEEEEeCCCCC--
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG----------FDARGNIKVLMATNRPDT-- 319 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~----------~~~~~~v~vI~atn~~~~-- 319 (426)
-|..+.-....+++.||++.-. +. +. ..+..+.. -+. +.-.....+|++||..-.
T Consensus 120 -~f~~a~l~gk~l~~~~E~~~~~--~~------~~---~~lK~lt~-gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 120 -RFGLARLEGKRAVIGDEVQKGY--RD------DE---STFKSLTG-GDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred -CchhhhhcCCEEEEecCCCCCc--cc------cH---Hhhhhhhc-CCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 1333333344589999986421 10 11 22223221 111 111235678889987533
Q ss_pred -CCccccCCCCcceEEEec
Q 014332 320 -LDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 320 -ld~al~r~gRf~~~i~~~ 337 (426)
-+.++.| |+ ..|.|+
T Consensus 187 ~~~~a~~R--R~-~vi~f~ 202 (304)
T TIGR01613 187 GFDGGIKR--RL-RIIPFT 202 (304)
T ss_pred CCChhhee--eE-EEEecc
Confidence 3567888 77 466665
No 459
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.08 E-value=0.0014 Score=60.37 Aligned_cols=67 Identities=25% Similarity=0.426 Sum_probs=44.1
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc-CCcEEEEecchhhhhhhc------------------chHHHHHHHHHHHHcC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELVQKYVG------------------EGARMVRELFQMARSK 260 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l-~~~~i~v~~~~l~~~~~g------------------~~~~~v~~lf~~a~~~ 260 (426)
..|.-+++.|+||+|||+++..+...+ +..++.++..++...... +.......+++.+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 467789999999999999999999988 788889998887554211 0122344566677777
Q ss_pred CCEEEE
Q 014332 261 KACIVF 266 (426)
Q Consensus 261 ~p~Il~ 266 (426)
...|+|
T Consensus 93 ~~nii~ 98 (199)
T PF06414_consen 93 RYNIIF 98 (199)
T ss_dssp T--EEE
T ss_pred CCCEEE
Confidence 776665
No 460
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0045 Score=57.07 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35677789999999999999999999863
No 461
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.08 E-value=0.0027 Score=69.77 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.+.||+|+|||||++.++...
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678889999999999999999999864
No 462
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.08 E-value=0.0035 Score=66.20 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=65.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhh--------------hh------------c---
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQK--------------YV------------G--- 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~--------------~~------------g--- 244 (426)
|++++..+|++|+||+|||+++..++... |.+.++++..+-... +. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 67888899999999999999999887532 455655554332111 00 0
Q ss_pred -------chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 245 -------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 245 -------~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
+....+..+.+.+....+..++||-+..+...- .........+..++..+. ..++.+|++++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-----d~~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~ 176 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF-----SNEAVVRRELRRLFAWLK----QKGVTAVITGER 176 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc-----cCHHHHHHHHHHHHHHHH----hCCCEEEEEECC
Confidence 012223344445556778899999998764211 011223445666666553 224556666654
No 463
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.08 E-value=0.00084 Score=58.82 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=28.4
Q ss_pred EecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhh
Q 014332 207 CYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV 243 (426)
Q Consensus 207 L~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~ 243 (426)
|.||||+|||++|+.+|.+++. ..++..+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999975 4566677766544
No 464
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0051 Score=56.23 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
....-+=|.||.|.||||+.|.+|.-+
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL 52 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLL 52 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhc
Confidence 445567889999999999999999976
No 465
>PRK10867 signal recognition particle protein; Provisional
Probab=97.07 E-value=0.0087 Score=61.62 Aligned_cols=195 Identities=16% Similarity=0.178 Sum_probs=99.5
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhh----------------h----hcchHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQK----------------Y----VGEGARMVRELFQ 255 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~----------------~----~g~~~~~v~~lf~ 255 (426)
.+|..++++||+|+||||++..+|..+ +..+..+++..+... + ............+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999888887754 555666665432211 0 0123344455666
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCC--ccccCCCCcce
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLD--PALLRPGRLDR 332 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~ld--~al~r~gRf~~ 332 (426)
.++.....+|+||=.-.+.. +......+..+.... .+..+++++.+.. .+.++ ..+...-.++
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~---------d~~lm~eL~~i~~~v----~p~evllVlda~~gq~av~~a~~F~~~~~i~- 243 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHI---------DEELMDELKAIKAAV----NPDEILLVVDAMTGQDAVNTAKAFNEALGLT- 243 (433)
T ss_pred HHHhcCCCEEEEeCCCCccc---------CHHHHHHHHHHHHhh----CCCeEEEEEecccHHHHHHHHHHHHhhCCCC-
Confidence 66666777999997655421 333333343333322 2334444443322 11111 1111100121
Q ss_pred EEEecCCCHHHHHHHHHHHHhc--CC-----CC------CCccHHHHHHhCCCCcHHHHHHHHHHHHHH---------HH
Q 014332 333 KVEFGLPDLESRTQIFKIHTRT--MN-----CE------RDIRFELLARLCPNSTGADIRSVCTEAGMF---------AI 390 (426)
Q Consensus 333 ~i~~~~P~~~er~~Il~~~l~~--~~-----~~------~~v~l~~la~~t~g~sg~di~~l~~~A~~~---------A~ 390 (426)
.+-+.-.|...|.-..-..... .+ .. ...+.+.++.+.=|+ +|+..++..|... +.
T Consensus 244 giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgm--gD~~~l~e~~~~~~~~~~~~~~~~ 321 (433)
T PRK10867 244 GVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGM--GDVLSLIEKAQEVVDEEKAEKLAK 321 (433)
T ss_pred EEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCC--CChHHHHHHHHHhhCHHHHHHHHH
Confidence 3334445544433322211111 11 11 123456677665453 4777777765542 11
Q ss_pred HHcCCCccHHHHHHHHHHHH
Q 014332 391 RARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 391 ~~~~~~It~ed~~~A~~~v~ 410 (426)
+-.....|.+||.+-++.+.
T Consensus 322 ~~~~g~f~l~d~~~q~~~~~ 341 (433)
T PRK10867 322 KLKKGKFDLEDFLEQLQQMK 341 (433)
T ss_pred HHHhCCCCHHHHHHHHHHHH
Confidence 11235689999999888764
No 466
>PF13245 AAA_19: Part of AAA domain
Probab=97.07 E-value=0.00075 Score=52.23 Aligned_cols=24 Identities=46% Similarity=0.628 Sum_probs=17.3
Q ss_pred CcceEecCCCChHH-HHHHHHHHhc
Q 014332 203 KGVLCYGPPGTGKT-LLARAVANRT 226 (426)
Q Consensus 203 ~~vLL~GppGtGKT-~laralA~~l 226 (426)
..+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566999999999 5556665544
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.06 E-value=0.00066 Score=67.79 Aligned_cols=73 Identities=25% Similarity=0.376 Sum_probs=48.4
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEe-cchhhhh--------h----hcchHHHHHHHHHHHHcCCCE
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVI-GSELVQK--------Y----VGEGARMVRELFQMARSKKAC 263 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~-~~~l~~~--------~----~g~~~~~v~~lf~~a~~~~p~ 263 (426)
+...+++++.||+|+||||++++++..... ..+.+. ..++.-. + .+...-....++..+....|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD 238 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC
Confidence 456788999999999999999999987632 222221 1122100 0 111122355678888888999
Q ss_pred EEEEeCCC
Q 014332 264 IVFFDEVD 271 (426)
Q Consensus 264 Il~iDEiD 271 (426)
.|++.|+-
T Consensus 239 ~IivGEiR 246 (344)
T PRK13851 239 RILLGEMR 246 (344)
T ss_pred eEEEEeeC
Confidence 99999974
No 468
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.06 E-value=0.0048 Score=61.92 Aligned_cols=113 Identities=15% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCC-----cEEEEec-------chhhhhh--------hcchH-HHHH---HHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDA-----CFIRVIG-------SELVQKY--------VGEGA-RMVR---ELFQMA 257 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~-----~~i~v~~-------~~l~~~~--------~g~~~-~~v~---~lf~~a 257 (426)
....+|+||||||||+|++.+++.+.. .++.+-. .++.... ..++. ..++ .+...|
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 445899999999999999999987633 2222211 1121111 00111 1111 111222
Q ss_pred ----HcCCCEEEEEeCCCcccCCccC--------CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 258 ----RSKKACIVFFDEVDAIGGARFD--------DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 258 ----~~~~p~Il~iDEiD~l~~~r~~--------~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
..+...+|++|++..++..... .+.+-++.....+-.|+..-......+.+.+|+|.
T Consensus 213 e~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~Tv 281 (380)
T PRK12608 213 KRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATA 281 (380)
T ss_pred HHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEE
Confidence 2355669999999987532110 12344666666666777765544445566555554
No 469
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.06 E-value=0.0029 Score=65.01 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.|--..|.++++||=++=. |.+....+...+..+. ..++++|..|++|..|
T Consensus 485 RAlYG~P~lvVLDEPNsNL----------D~~GE~AL~~Ai~~~k----~rG~~vvviaHRPs~L 535 (580)
T COG4618 485 RALYGDPFLVVLDEPNSNL----------DSEGEAALAAAILAAK----ARGGTVVVIAHRPSAL 535 (580)
T ss_pred HHHcCCCcEEEecCCCCCc----------chhHHHHHHHHHHHHH----HcCCEEEEEecCHHHH
Confidence 3445778999999976643 5566667776666654 3456788888887544
No 470
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.05 E-value=0.0058 Score=54.11 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=74.8
Q ss_pred ecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChH
Q 014332 208 YGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNE 287 (426)
Q Consensus 208 ~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 287 (426)
.+.+||||||++.++++-++- +-.+.-.++.++ ...+.+..+.+........++|.|==.... .
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~------------r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK------------R 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH------------H
Confidence 478999999999999999873 334555555433 345556666666533333488888544431 1
Q ss_pred HHHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCCCc--------cccCCCCcceEEEecCCCHHHHHHHHHHHHhcC
Q 014332 288 VQRTMLEIVNQLD--GFDARGNIKVLMATNRPDTLDP--------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM 355 (426)
Q Consensus 288 ~~~~l~~ll~~l~--~~~~~~~v~vI~atn~~~~ld~--------al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~ 355 (426)
-...+...+..+. .+....++.+|+-.=..+.-.+ .++..|==...|.....+...-..|++.+++.+
T Consensus 69 eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 69 ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 2233444444432 1233457777776644333122 222211112355555566777777888777654
No 471
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.05 E-value=0.016 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..++|.|++|+|||+|.+.+.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999999874
No 472
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0045 Score=57.07 Aligned_cols=29 Identities=45% Similarity=0.689 Sum_probs=25.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||+|++.++...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 34677789999999999999999999864
No 473
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.04 E-value=0.014 Score=63.38 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=94.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchh-----hhh-------h---hcch-------------HH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSEL-----VQK-------Y---VGEG-------------AR 248 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l-----~~~-------~---~g~~-------------~~ 248 (426)
..+-++|+-|.|.|||+++-.++..+ ...++.++.++- .+. + .|+. ..
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 34679999999999999999998633 345555554431 111 1 1111 22
Q ss_pred HHHHHHHH-HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCC
Q 014332 249 MVRELFQM-ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP 327 (426)
Q Consensus 249 ~v~~lf~~-a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~ 327 (426)
.+..+|.. +....|..++|||.+.+ .++.+...+..|++. .+.++.+|++|...-.+.-+=+|
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli----------~~~~l~~~l~fLl~~-----~P~~l~lvv~SR~rP~l~la~lR- 179 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLI----------SDPALHEALRFLLKH-----APENLTLVVTSRSRPQLGLARLR- 179 (894)
T ss_pred HHHHHHHHHHhhcCceEEEecccccc----------CcccHHHHHHHHHHh-----CCCCeEEEEEeccCCCCccccee-
Confidence 34455543 45578999999999998 367788888888876 35788888888543222211111
Q ss_pred CCcceEEEecC----CCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcH
Q 014332 328 GRLDRKVEFGL----PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (426)
Q Consensus 328 gRf~~~i~~~~----P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg 375 (426)
-=+..+++.. .+.+|-.+++..... ..+ +.-++..|-..++|+..
T Consensus 180 -lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~~ 228 (894)
T COG2909 180 -LRDELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWAA 228 (894)
T ss_pred -ehhhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHHH
Confidence 1122334432 466777777766542 111 23456777778888754
No 474
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00094 Score=64.55 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=24.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.++...-+-|.||+|+||||+.|.||.-
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCc
Confidence 3456677999999999999999999984
No 475
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.03 E-value=0.00041 Score=58.28 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.8
Q ss_pred ceEecCCCChHHHHHHHHHHhc
Q 014332 205 VLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l 226 (426)
|+|.|+|||||||+|+.++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 476
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.03 E-value=0.0017 Score=59.72 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
-+.++..+.|.||+|+|||+|++.++...
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34677889999999999999999999854
No 477
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.02 E-value=0.0016 Score=63.78 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=27.3
Q ss_pred CcceEecCCCChHHHHHHHHHHhc-CCcEEEEecchhh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELV 239 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l-~~~~i~v~~~~l~ 239 (426)
.-+++.|+|||||||+|+.+++++ +.. .++...+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~--~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV--NVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE--EEeccHHH
Confidence 458899999999999999999998 544 44544443
No 478
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.02 E-value=0.0035 Score=68.67 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=26.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.+.||+|+|||||++.++...
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788889999999999999999999864
No 479
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.02 E-value=0.005 Score=54.59 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=61.4
Q ss_pred cceEecCCCChHHHHHHHHHHhc---CCcEEE---Eecc----hh--hhhh-------h--------cch---HHHHHHH
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT---DACFIR---VIGS----EL--VQKY-------V--------GEG---ARMVREL 253 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l---~~~~i~---v~~~----~l--~~~~-------~--------g~~---~~~v~~l 253 (426)
-+.+|+++|.|||++|-++|-+. |..+.. +.+. +. +.+. . .+. ....+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 47889999999999999998754 333322 2221 00 0000 0 011 1122334
Q ss_pred HHHH----HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 014332 254 FQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (426)
Q Consensus 254 f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gR 329 (426)
++.+ ....+.+|+|||+-....-.. -....+.++++. .+.+.-||+|.+. .++.|+. +
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gl--------i~~~~v~~ll~~-----rp~~~evIlTGr~---~p~~l~e--~ 145 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGL--------LDVEEVVDLLKA-----KPEDLELVLTGRN---APKELIE--A 145 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCC--------CCHHHHHHHHHc-----CCCCCEEEEECCC---CCHHHHH--h
Confidence 4433 346678999999977643211 112344555553 3445678888875 3445554 5
Q ss_pred cceEEEe
Q 014332 330 LDRKVEF 336 (426)
Q Consensus 330 f~~~i~~ 336 (426)
.|.+-++
T Consensus 146 AD~VTEm 152 (159)
T cd00561 146 ADLVTEM 152 (159)
T ss_pred Cceeeec
Confidence 5544443
No 480
>PLN02674 adenylate kinase
Probab=97.02 E-value=0.00058 Score=64.85 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=31.4
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.++..++|.||||+||+|+++.+|+.++.+.+ +..+++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHH
Confidence 34567999999999999999999999986655 44455443
No 481
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.01 E-value=0.0072 Score=66.89 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred CcceEecCCCChHHHHHHHHHH
Q 014332 203 KGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~ 224 (426)
+.++|+||.+.|||++.|.++-
T Consensus 328 ~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHH
Confidence 4589999999999999999975
No 482
>PRK13808 adenylate kinase; Provisional
Probab=97.01 E-value=0.0055 Score=60.75 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=28.3
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
.|+|+||||+|||++++.||..++.+++ +..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 3899999999999999999999987555 4445543
No 483
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.00 E-value=0.0021 Score=59.73 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=25.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+.++..+.|.||+|+|||+|++.++..
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567788999999999999999999985
No 484
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.00 E-value=0.0024 Score=58.70 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=76.1
Q ss_pred ccChhHHHhhC--CCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecch----hhhh-----------------
Q 014332 188 MLHPEKFVKLG--IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE----LVQK----------------- 241 (426)
Q Consensus 188 l~~~~~~~~~g--~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~----l~~~----------------- 241 (426)
..+.++-.++| ++.+.-+++.|+.|||||.|.+.++--+ +.....++... ++.+
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 44555556665 4556668999999999999999998632 22222222110 0000
Q ss_pred ------------hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 242 ------------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 242 ------------~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
........+..+.+..+.+...|++||-+..++... -...++++++.+..+...+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKv- 160 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKV- 160 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCE-
Confidence 011223445566666667777899999999886422 123455666666655555554
Q ss_pred EEEEeCCCCCCCccccC
Q 014332 310 VLMATNRPDTLDPALLR 326 (426)
Q Consensus 310 vI~atn~~~~ld~al~r 326 (426)
|..|-+|+.++.+.+.
T Consensus 161 -IilTvhp~~l~e~~~~ 176 (235)
T COG2874 161 -IILTVHPSALDEDVLT 176 (235)
T ss_pred -EEEEeChhhcCHHHHH
Confidence 4445567777776654
No 485
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.00 E-value=0.0038 Score=67.15 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=25.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.|++|+|||||++.++...
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45778889999999999999999999865
No 486
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0066 Score=56.09 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||+++++...
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34667779999999999999999999853
No 487
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.99 E-value=0.0044 Score=58.07 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 252 ~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
..+..|-...|.+||+||=.+ |-++-....+.+|+..+. ..-...+|+.|+..+
T Consensus 154 vaLARAialdPell~~DEPts----------GLDPI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~ 207 (263)
T COG1127 154 VALARAIALDPELLFLDEPTS----------GLDPISAGVIDELIRELN---DALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCC----------CCCcchHHHHHHHHHHHH---HhhCCEEEEEECChH
Confidence 345556667899999999533 335555666777776654 224556777777654
No 488
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.98 E-value=0.0053 Score=64.85 Aligned_cols=108 Identities=21% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh------hc----------------------ch
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VG----------------------EG 246 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~------~g----------------------~~ 246 (426)
|+..+..++++||||+|||+++..++.+. +.+.++++..+-...+ .| ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 67788889999999999999999988643 5566665543221110 00 01
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
...+..+.+......+.+++||-+..+.... ......+.+..+...+. ..++.+|+|..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~------~~~~~~~~l~~l~~~~k----~~~~t~l~t~~ 407 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG------SLNEFRQFVIRLTDYLK----SEEITGLFTNL 407 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC------CHHHHHHHHHHHHHHHH----hCCCeEEEEec
Confidence 1223334444556678899999998875321 12233444445555443 34566666654
No 489
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.98 E-value=0.0023 Score=56.52 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=33.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~ 242 (426)
+..|+|+|.||+|||++|+++.+.+ +.+.+.+++..+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 3458999999999999999999976 7889999998887643
No 490
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.98 E-value=0.0013 Score=56.48 Aligned_cols=30 Identities=30% Similarity=0.265 Sum_probs=26.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
++...++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 556679999999999999999999998754
No 491
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.98 E-value=0.0025 Score=60.90 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=25.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677789999999999999999999854
No 492
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.98 E-value=0.004 Score=68.32 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 487 ~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678889999999999999999999854
No 493
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.97 E-value=0.005 Score=66.17 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.+.||+|+|||||++.++...
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45678889999999999999999999854
No 494
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.97 E-value=0.0046 Score=58.33 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||+++++...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45677889999999999999999999753
No 495
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.97 E-value=0.0052 Score=65.13 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
-++++..+.|.||+|+|||||++.+++..
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45778889999999999999999999854
No 496
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.027 Score=56.57 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=34.7
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCCCc----cHHHHHHhCCCCcHHHHHHHHH
Q 014332 333 KVEFGLPDLESRTQIFKIHTRTMNCERDI----RFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 333 ~i~~~~P~~~er~~Il~~~l~~~~~~~~v----~l~~la~~t~g~sg~di~~l~~ 383 (426)
.|+++.++.+|-..++..|++.--+..++ ....+--+. +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 57888999999999999888754333222 345555555 667877777764
No 497
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.96 E-value=0.0045 Score=59.75 Aligned_cols=220 Identities=15% Similarity=0.160 Sum_probs=105.3
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHH
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 248 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~ 248 (426)
+++-.+++++.+.++.+. + ..|..++||.|.+|+||++++|..|.-.+..++.+..+.-. ...+...
T Consensus 9 ~lVlf~~ai~hi~ri~Rv-L----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~ 75 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV-L----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKE 75 (268)
T ss_dssp -----HHHHHHHHHHHHH-H----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH-H----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHH
Confidence 366667777777776653 1 13567899999999999999999999889888877654211 1223344
Q ss_pred HHHHHHHHHH-cCCCEEEEEeCCCcccC-----------CccCCCCCCChHHHHHHHHHHHHh--cCCC-----------
Q 014332 249 MVRELFQMAR-SKKACIVFFDEVDAIGG-----------ARFDDGVGGDNEVQRTMLEIVNQL--DGFD----------- 303 (426)
Q Consensus 249 ~v~~lf~~a~-~~~p~Il~iDEiD~l~~-----------~r~~~~~~~~~~~~~~l~~ll~~l--~~~~----------- 303 (426)
-++.++..|- .+.|.+++|.|-+-.-. ...-.+--...+....+..+-... .+..
T Consensus 76 dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~ 155 (268)
T PF12780_consen 76 DLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFI 155 (268)
T ss_dssp HHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHH
Confidence 5666666554 45688888888654310 000000001223333222222111 1111
Q ss_pred --CCCCeEEEEEeCCC-CCCC------ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCc
Q 014332 304 --ARGNIKVLMATNRP-DTLD------PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNST 374 (426)
Q Consensus 304 --~~~~v~vI~atn~~-~~ld------~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~s 374 (426)
-+.+.-||.+-++. ..+. |+|.+ ++ ...-+..-+.+....+-..++..........-+.++..+
T Consensus 156 ~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~c-tIdW~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~~---- 228 (268)
T PF12780_consen 156 ERVRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CC-TIDWFDPWPEEALLSVANKFLSDIELLSEELKKSLAEIM---- 228 (268)
T ss_dssp HHHCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HS-EEEEEES--HHHHHHHHHHHCCHHHTSS--HHHHHHHHH----
T ss_pred HHHHhheeEEEEECCCCchHHHHHHhCcchhc--cc-EEEeCCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHHH----
Confidence 13455555555442 2222 45554 33 345566667788888888777665432211122233222
Q ss_pred HHHHHHHHHHHHHHHHH--HcCCCccHHHHHHHHHHH
Q 014332 375 GADIRSVCTEAGMFAIR--ARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 375 g~di~~l~~~A~~~A~~--~~~~~It~ed~~~A~~~v 409 (426)
..+..-+.+....-.+ ++...+|+..|.+-++-.
T Consensus 229 -~~iH~sv~~~s~~y~~~~~r~~yvTP~syL~~i~~f 264 (268)
T PF12780_consen 229 -VFIHQSVEEISRKYLQELRRYNYVTPKSYLEFIKTF 264 (268)
T ss_dssp -HHHHHHHHHHHHHHHHHCS------HHHHHHHHH--
T ss_pred -HHHhccchHhHHHHHHHcCCcceECcHHHHHHHhhh
Confidence 1333333333222122 345679999988877643
No 498
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.95 E-value=0.0018 Score=64.38 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=33.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.+.+.|.|+||+|||+|++.+++.++.+++.-.+.++...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~ 201 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEE 201 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHH
Confidence 3579999999999999999999999998877666655544
No 499
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.95 E-value=0.0013 Score=66.05 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=21.4
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 500
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.95 E-value=0.0029 Score=58.81 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34567779999999999999999999854
Done!