Query 014332
Match_columns 426
No_of_seqs 493 out of 3041
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_H 26S protease regulatory 100.0 1.1E-88 3.8E-93 688.5 35.6 423 4-426 14-467 (467)
2 4b4t_J 26S protease regulatory 100.0 1.8E-72 6E-77 563.7 38.2 376 32-416 21-396 (405)
3 4b4t_I 26S protease regulatory 100.0 6.4E-70 2.2E-74 546.5 39.6 337 82-422 100-436 (437)
4 4b4t_L 26S protease subunit RP 100.0 5.8E-68 2E-72 538.6 40.6 377 18-412 49-425 (437)
5 4b4t_M 26S protease regulatory 100.0 7.9E-68 2.7E-72 537.2 31.8 339 75-413 66-426 (434)
6 4b4t_K 26S protease regulatory 100.0 5.1E-66 1.7E-70 523.6 39.3 371 33-412 46-417 (428)
7 3cf2_A TER ATPase, transitiona 100.0 2.9E-49 1E-53 426.9 11.4 264 151-414 460-748 (806)
8 3cf2_A TER ATPase, transitiona 100.0 6.1E-46 2.1E-50 401.1 19.9 251 160-413 196-463 (806)
9 3cf0_A Transitional endoplasmi 100.0 6.4E-42 2.2E-46 334.3 21.1 254 158-411 5-283 (301)
10 2x8a_A Nuclear valosin-contain 100.0 1.2E-41 4.1E-46 328.1 20.8 251 161-414 3-269 (274)
11 3h4m_A Proteasome-activating n 100.0 9.8E-41 3.3E-45 322.1 26.6 261 156-416 5-265 (285)
12 2ce7_A Cell division protein F 100.0 1.2E-40 4.3E-45 342.6 27.2 253 162-415 10-262 (476)
13 1lv7_A FTSH; alpha/beta domain 100.0 5.9E-40 2E-44 312.5 27.5 256 157-413 1-256 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.9E-40 2.7E-44 322.5 24.4 228 159-392 3-233 (322)
15 3eie_A Vacuolar protein sortin 100.0 1.2E-39 4.2E-44 321.0 20.7 251 157-413 7-302 (322)
16 2qp9_X Vacuolar protein sortin 100.0 1.3E-38 4.4E-43 318.0 21.6 254 154-413 37-335 (355)
17 2dhr_A FTSH; AAA+ protein, hex 100.0 2.8E-38 9.7E-43 326.9 23.8 253 163-416 26-278 (499)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.4E-38 8.2E-43 301.1 20.9 254 163-417 1-257 (262)
19 3hu3_A Transitional endoplasmi 100.0 1.2E-37 4.2E-42 322.4 24.9 249 162-413 198-463 (489)
20 1ixz_A ATP-dependent metallopr 100.0 2.1E-36 7.3E-41 287.4 26.0 247 159-406 7-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 2.6E-37 8.7E-42 317.3 19.3 232 155-392 121-355 (444)
22 1iy2_A ATP-dependent metallopr 100.0 6.6E-35 2.3E-39 281.1 27.3 247 159-406 31-277 (278)
23 3b9p_A CG5977-PA, isoform A; A 100.0 1.8E-35 6.2E-40 287.1 19.9 251 157-410 10-273 (297)
24 2r62_A Cell division protease 100.0 3E-38 1E-42 302.2 0.1 257 161-418 4-262 (268)
25 3d8b_A Fidgetin-like protein 1 100.0 1E-34 3.4E-39 290.0 23.5 251 157-413 73-338 (357)
26 1ypw_A Transitional endoplasmi 100.0 9.5E-38 3.3E-42 341.4 -5.5 237 157-393 466-702 (806)
27 3vfd_A Spastin; ATPase, microt 100.0 7E-34 2.4E-38 287.0 22.2 254 152-411 99-367 (389)
28 1ypw_A Transitional endoplasmi 100.0 6.9E-31 2.3E-35 287.3 23.8 247 161-410 197-460 (806)
29 3t15_A Ribulose bisphosphate c 99.9 5.8E-28 2E-32 234.7 11.9 177 198-380 32-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 9.1E-28 3.1E-32 247.2 -4.8 205 162-384 31-262 (456)
31 3syl_A Protein CBBX; photosynt 99.9 1.1E-23 3.8E-28 204.8 18.9 224 169-405 32-282 (309)
32 3pfi_A Holliday junction ATP-d 99.9 1.1E-22 3.8E-27 200.5 23.8 224 156-409 17-254 (338)
33 3uk6_A RUVB-like 2; hexameric 99.9 5E-23 1.7E-27 205.1 18.8 220 163-409 39-330 (368)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 7.7E-22 2.6E-26 192.9 21.3 220 159-409 3-238 (324)
35 2chg_A Replication factor C sm 99.9 2.6E-20 9.1E-25 170.3 21.7 207 157-407 6-224 (226)
36 1ofh_A ATP-dependent HSL prote 99.8 4.4E-21 1.5E-25 185.9 14.0 236 169-408 16-298 (310)
37 2v1u_A Cell division control p 99.8 5.3E-20 1.8E-24 183.3 21.6 224 165-410 16-277 (387)
38 3m6a_A ATP-dependent protease 99.8 4.1E-22 1.4E-26 209.1 5.8 228 165-410 78-342 (543)
39 1d2n_A N-ethylmaleimide-sensit 99.8 2E-20 6.7E-25 179.1 12.9 224 168-408 33-263 (272)
40 3pvs_A Replication-associated 99.8 4.7E-20 1.6E-24 188.8 16.5 210 158-409 16-244 (447)
41 1g41_A Heat shock protein HSLU 99.8 1.7E-21 5.9E-26 197.9 5.0 169 169-349 16-189 (444)
42 3u61_B DNA polymerase accessor 99.8 7.9E-20 2.7E-24 179.1 16.4 209 156-408 14-236 (324)
43 3hws_A ATP-dependent CLP prote 99.8 5.3E-20 1.8E-24 183.6 14.7 234 170-405 17-345 (363)
44 1g8p_A Magnesium-chelatase 38 99.8 2.7E-19 9.1E-24 176.6 19.4 225 160-413 16-326 (350)
45 1njg_A DNA polymerase III subu 99.8 2.1E-19 7.2E-24 166.2 16.9 208 157-406 12-248 (250)
46 2z4s_A Chromosomal replication 99.8 2.6E-19 8.8E-24 183.2 18.9 220 162-410 99-333 (440)
47 2r44_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 174.5 19.7 222 162-412 21-300 (331)
48 1l8q_A Chromosomal replication 99.8 3.3E-19 1.1E-23 174.8 18.9 220 162-410 5-241 (324)
49 1sxj_A Activator 1 95 kDa subu 99.8 4.4E-20 1.5E-24 192.7 12.9 230 154-408 25-273 (516)
50 1sxj_D Activator 1 41 kDa subu 99.8 3.4E-19 1.2E-23 175.9 18.2 213 156-407 25-261 (353)
51 1in4_A RUVB, holliday junction 99.8 6E-18 2.1E-22 166.9 25.0 222 158-409 15-250 (334)
52 3bos_A Putative DNA replicatio 99.8 9.8E-19 3.3E-23 162.6 17.8 206 163-407 23-241 (242)
53 2qby_B CDC6 homolog 3, cell di 99.8 9.9E-19 3.4E-23 174.5 17.0 211 168-410 20-271 (384)
54 1jbk_A CLPB protein; beta barr 99.8 1.3E-19 4.6E-24 161.8 9.4 163 160-348 14-194 (195)
55 3pxi_A Negative regulator of g 99.8 1.3E-19 4.6E-24 197.4 10.8 198 168-390 491-725 (758)
56 2chq_A Replication factor C sm 99.8 8.9E-19 3E-23 170.1 14.4 210 157-406 6-223 (319)
57 1sxj_B Activator 1 37 kDa subu 99.8 5.6E-18 1.9E-22 164.8 20.0 208 156-407 9-229 (323)
58 1r6b_X CLPA protein; AAA+, N-t 99.8 1.9E-18 6.4E-23 188.3 18.5 227 158-409 176-433 (758)
59 1um8_A ATP-dependent CLP prote 99.8 3.9E-19 1.3E-23 178.1 11.7 237 169-407 22-363 (376)
60 3te6_A Regulatory protein SIR3 99.8 2.5E-19 8.6E-24 175.0 10.0 215 170-410 22-316 (318)
61 4fcw_A Chaperone protein CLPB; 99.8 1.4E-18 4.8E-23 168.7 14.8 202 168-390 17-279 (311)
62 1iqp_A RFCS; clamp loader, ext 99.8 7.3E-18 2.5E-22 164.2 19.8 196 156-386 13-216 (327)
63 2qby_A CDC6 homolog 1, cell di 99.8 6.4E-18 2.2E-22 167.9 19.2 223 165-410 17-273 (386)
64 3pxg_A Negative regulator of g 99.8 1E-18 3.4E-23 180.3 13.1 211 158-409 170-406 (468)
65 1jr3_A DNA polymerase III subu 99.8 1E-17 3.6E-22 166.4 18.9 207 158-406 6-241 (373)
66 1fnn_A CDC6P, cell division co 99.8 1.9E-17 6.4E-22 165.2 19.9 221 166-410 15-275 (389)
67 1r6b_X CLPA protein; AAA+, N-t 99.8 7.9E-18 2.7E-22 183.4 16.7 198 169-389 459-715 (758)
68 1qvr_A CLPB protein; coiled co 99.7 2.3E-17 8E-22 181.8 19.4 208 159-392 161-395 (854)
69 1sxj_E Activator 1 40 kDa subu 99.7 2.4E-17 8.3E-22 163.0 17.1 196 157-389 3-244 (354)
70 3pxi_A Negative regulator of g 99.7 1.2E-17 4.1E-22 181.9 14.8 194 158-392 170-388 (758)
71 2p65_A Hypothetical protein PF 99.7 6E-18 2E-22 150.8 9.0 156 160-340 14-187 (187)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 5.1E-18 1.7E-22 175.6 9.1 205 169-403 23-280 (500)
73 1sxj_C Activator 1 40 kDa subu 99.7 8.3E-17 2.8E-21 158.9 16.7 213 155-406 12-236 (340)
74 1qvr_A CLPB protein; coiled co 99.7 4.7E-17 1.6E-21 179.4 12.2 203 167-390 557-820 (854)
75 2bjv_A PSP operon transcriptio 99.7 2E-16 6.8E-21 150.5 14.9 208 165-402 3-250 (265)
76 3f9v_A Minichromosome maintena 99.7 4.4E-17 1.5E-21 172.4 8.7 226 169-414 296-592 (595)
77 1ojl_A Transcriptional regulat 99.7 1.4E-16 4.9E-21 155.1 11.4 204 169-403 3-246 (304)
78 3co5_A Putative two-component 99.6 3.9E-16 1.3E-20 135.0 5.5 112 169-317 5-116 (143)
79 3n70_A Transport activator; si 99.6 1.4E-15 4.8E-20 131.7 8.7 112 169-317 2-116 (145)
80 3vlf_B 26S protease regulatory 99.6 2.8E-15 9.7E-20 118.8 8.7 87 340-426 2-88 (88)
81 3k1j_A LON protease, ATP-depen 99.6 4.1E-15 1.4E-19 158.0 12.6 221 160-408 33-374 (604)
82 1w5s_A Origin recognition comp 99.6 1.3E-13 4.6E-18 138.4 20.1 228 166-409 20-293 (412)
83 3cmw_A Protein RECA, recombina 99.5 6.5E-15 2.2E-19 169.2 8.3 155 162-317 1014-1218(1706)
84 1a5t_A Delta prime, HOLB; zinc 99.5 2.3E-13 7.9E-18 134.0 17.1 174 171-383 5-206 (334)
85 3kw6_A 26S protease regulatory 99.5 5.5E-14 1.9E-18 108.7 9.2 76 337-412 1-76 (78)
86 2krk_A 26S protease regulatory 99.5 1.1E-13 3.7E-18 109.0 8.5 76 337-412 9-84 (86)
87 2gno_A DNA polymerase III, gam 99.4 5.9E-13 2E-17 129.5 13.3 142 172-352 1-152 (305)
88 2wg5_A General control protein 99.4 1.1E-12 3.6E-17 107.7 10.4 75 82-160 34-108 (109)
89 1ny5_A Transcriptional regulat 99.4 1.5E-12 5.2E-17 130.8 11.7 208 167-406 136-384 (387)
90 3ec2_A DNA replication protein 99.3 4.2E-12 1.4E-16 113.3 10.6 133 161-318 3-144 (180)
91 4akg_A Glutathione S-transfera 99.3 3E-11 1E-15 144.5 19.6 140 201-355 1266-1434(2695)
92 3aji_B S6C, proteasome (prosom 99.3 4.1E-12 1.4E-16 99.3 7.0 75 340-414 2-76 (83)
93 3f8t_A Predicted ATPase involv 99.2 1.9E-10 6.6E-15 116.5 17.4 221 170-416 215-490 (506)
94 2qen_A Walker-type ATPase; unk 99.2 1.6E-09 5.6E-14 105.6 21.1 192 162-383 6-247 (350)
95 2fna_A Conserved hypothetical 99.2 1.4E-09 4.9E-14 106.3 20.4 189 162-384 7-252 (357)
96 2dzn_B 26S protease regulatory 99.2 5.3E-12 1.8E-16 98.5 2.0 71 342-412 1-71 (82)
97 3dzd_A Transcriptional regulat 99.1 3E-10 1E-14 113.2 12.3 195 168-389 129-361 (368)
98 2w58_A DNAI, primosome compone 99.1 1.7E-10 5.7E-15 104.7 7.7 100 163-273 20-127 (202)
99 2kjq_A DNAA-related protein; s 99.1 1.8E-10 6.1E-15 100.1 6.5 105 201-336 35-145 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 99.0 9.8E-11 3.3E-15 113.7 3.0 122 198-324 119-242 (331)
101 4akg_A Glutathione S-transfera 98.9 3.4E-08 1.1E-12 118.6 21.4 166 202-389 645-840 (2695)
102 2qgz_A Helicase loader, putati 98.9 1E-09 3.5E-14 106.7 6.5 98 164-273 120-226 (308)
103 3h43_A Proteasome-activating n 98.8 1.2E-08 4.1E-13 79.5 8.3 63 82-148 15-77 (85)
104 2r2a_A Uncharacterized protein 98.7 7E-09 2.4E-13 94.4 5.4 127 203-342 6-156 (199)
105 1jr3_D DNA polymerase III, del 98.7 1.2E-07 4.1E-12 93.0 14.3 176 201-408 17-208 (343)
106 1svm_A Large T antigen; AAA+ f 98.7 8E-09 2.7E-13 103.0 5.0 120 197-338 164-284 (377)
107 3cmu_A Protein RECA, recombina 98.7 4.4E-08 1.5E-12 114.3 10.7 125 190-314 1412-1561(2050)
108 1tue_A Replication protein E1; 98.6 3.4E-08 1.2E-12 89.7 5.5 33 198-230 54-86 (212)
109 3vkg_A Dynein heavy chain, cyt 98.6 4E-07 1.4E-11 110.2 14.4 140 201-354 1303-1471(3245)
110 2c9o_A RUVB-like 1; hexameric 98.5 2.6E-07 9E-12 94.5 10.5 127 262-409 296-437 (456)
111 3vkg_A Dynein heavy chain, cyt 98.4 1.9E-06 6.4E-11 104.5 16.0 163 202-388 604-799 (3245)
112 1u0j_A DNA replication protein 98.4 2.6E-07 8.8E-12 87.5 6.4 118 201-349 103-248 (267)
113 1ye8_A Protein THEP1, hypothet 98.3 2.1E-06 7.1E-11 76.5 9.7 122 204-342 2-166 (178)
114 3hr8_A Protein RECA; alpha and 98.2 2E-06 6.7E-11 85.0 8.1 118 198-315 57-196 (356)
115 1xp8_A RECA protein, recombina 98.2 4.1E-06 1.4E-10 83.1 10.3 118 198-315 70-209 (366)
116 1z6t_A APAF-1, apoptotic prote 98.2 1.7E-05 5.6E-10 83.3 15.3 167 167-375 123-322 (591)
117 2zr9_A Protein RECA, recombina 98.2 1.3E-06 4.4E-11 86.2 6.4 78 198-275 57-153 (349)
118 3sfz_A APAF-1, apoptotic pepti 98.2 5.8E-05 2E-09 85.4 20.2 172 164-375 120-322 (1249)
119 3m9b_A Proteasome-associated A 98.2 5.1E-06 1.8E-10 76.4 8.8 75 73-154 87-161 (251)
120 2w0m_A SSO2452; RECA, SSPF, un 98.2 5.9E-06 2E-10 75.4 9.3 109 198-317 19-168 (235)
121 1n0w_A DNA repair protein RAD5 98.2 6E-06 2E-10 76.1 9.4 78 198-275 20-133 (243)
122 2cvh_A DNA repair and recombin 98.2 4.4E-06 1.5E-10 75.8 8.3 40 198-237 16-55 (220)
123 3cmu_A Protein RECA, recombina 98.1 1.5E-06 5.2E-11 101.6 5.6 131 187-317 714-869 (2050)
124 2ehv_A Hypothetical protein PH 98.1 7.2E-06 2.5E-10 75.9 8.8 129 198-337 26-206 (251)
125 3upu_A ATP-dependent DNA helic 98.1 3.9E-06 1.3E-10 85.8 7.1 61 152-226 8-69 (459)
126 1u94_A RECA protein, recombina 98.1 4.7E-06 1.6E-10 82.4 7.1 78 198-275 59-155 (356)
127 2z43_A DNA repair and recombin 98.0 7.1E-06 2.4E-10 80.0 6.1 118 198-316 103-257 (324)
128 1v5w_A DMC1, meiotic recombina 97.9 1.2E-05 4.2E-10 79.0 6.9 118 198-316 118-273 (343)
129 3io5_A Recombination and repai 97.9 2E-05 6.7E-10 76.2 7.9 117 198-315 25-170 (333)
130 3lda_A DNA repair protein RAD5 97.9 1.7E-05 5.7E-10 79.6 7.2 118 198-316 174-327 (400)
131 1pzn_A RAD51, DNA repair and r 97.8 2.9E-05 1E-09 76.5 8.2 40 198-237 127-175 (349)
132 4a74_A DNA repair and recombin 97.8 1.3E-05 4.4E-10 73.2 5.0 40 198-237 21-69 (231)
133 2dr3_A UPF0273 protein PH0284; 97.8 6.6E-05 2.3E-09 69.1 9.7 39 198-236 19-60 (247)
134 1qhx_A CPT, protein (chloramph 97.8 1.4E-05 4.7E-10 70.2 4.5 38 202-239 3-40 (178)
135 2b8t_A Thymidine kinase; deoxy 97.8 3.1E-05 1.1E-09 71.4 6.9 71 202-273 12-101 (223)
136 2orw_A Thymidine kinase; TMTK, 97.8 6.8E-06 2.3E-10 73.5 2.0 31 203-233 4-37 (184)
137 2i1q_A DNA repair and recombin 97.7 2.9E-05 9.9E-10 75.4 5.2 117 198-315 94-257 (322)
138 2a5y_B CED-4; apoptosis; HET: 97.7 0.00044 1.5E-08 72.1 14.4 167 171-375 131-331 (549)
139 2iut_A DNA translocase FTSK; n 97.7 0.00035 1.2E-08 72.7 13.4 75 262-349 344-420 (574)
140 3vaa_A Shikimate kinase, SK; s 97.7 1.8E-05 6.3E-10 71.1 3.2 35 199-233 22-56 (199)
141 3jvv_A Twitching mobility prot 97.6 0.00011 3.8E-09 72.5 8.5 99 201-320 122-234 (356)
142 3trf_A Shikimate kinase, SK; a 97.6 2.3E-05 7.7E-10 69.3 3.1 32 202-233 5-36 (185)
143 2p5t_B PEZT; postsegregational 97.6 0.00016 5.6E-09 67.5 8.3 39 200-238 30-68 (253)
144 2rhm_A Putative kinase; P-loop 97.6 4.3E-05 1.5E-09 67.8 4.0 34 199-232 2-35 (193)
145 1g41_A Heat shock protein HSLU 97.5 0.00087 3E-08 67.8 13.6 156 247-408 238-432 (444)
146 1nlf_A Regulatory protein REPA 97.5 9.2E-05 3.1E-09 70.2 6.2 28 198-225 26-53 (279)
147 1zp6_A Hypothetical protein AT 97.5 4.6E-05 1.6E-09 67.6 3.7 41 198-238 5-45 (191)
148 3iij_A Coilin-interacting nucl 97.5 5.8E-05 2E-09 66.4 3.6 33 201-233 10-42 (180)
149 2r6a_A DNAB helicase, replicat 97.5 0.00019 6.5E-09 73.1 7.8 38 198-235 199-240 (454)
150 2zts_A Putative uncharacterize 97.4 0.00023 7.7E-09 65.5 7.5 38 198-235 26-67 (251)
151 3kb2_A SPBC2 prophage-derived 97.4 6.9E-05 2.4E-09 65.0 3.5 31 204-234 3-33 (173)
152 1cr0_A DNA primase/helicase; R 97.4 0.0002 6.7E-09 68.4 7.0 37 198-234 31-71 (296)
153 3cmw_A Protein RECA, recombina 97.4 0.00019 6.4E-09 83.3 7.8 125 191-315 1417-1566(1706)
154 1kag_A SKI, shikimate kinase I 97.4 9.2E-05 3.1E-09 64.5 4.1 36 202-239 4-39 (173)
155 1y63_A LMAJ004144AAA protein; 97.4 6.5E-05 2.2E-09 66.7 3.0 32 201-232 9-41 (184)
156 2iyv_A Shikimate kinase, SK; t 97.4 7.3E-05 2.5E-09 66.0 3.2 30 203-232 3-32 (184)
157 1via_A Shikimate kinase; struc 97.4 9.1E-05 3.1E-09 64.9 3.8 29 204-232 6-34 (175)
158 2r8r_A Sensor protein; KDPD, P 97.4 0.003 1E-07 58.1 13.9 32 204-235 8-42 (228)
159 3dm5_A SRP54, signal recogniti 97.4 0.0012 4.2E-08 66.7 12.2 195 201-411 99-342 (443)
160 1gvn_B Zeta; postsegregational 97.4 0.00014 4.9E-09 69.5 5.1 39 200-238 31-69 (287)
161 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00032 1.1E-08 65.8 7.2 39 202-240 4-45 (260)
162 2eyu_A Twitching motility prot 97.3 7.9E-05 2.7E-09 70.3 2.9 73 199-271 22-108 (261)
163 1zuh_A Shikimate kinase; alpha 97.3 0.00013 4.4E-09 63.4 3.8 32 202-233 7-38 (168)
164 4gp7_A Metallophosphoesterase; 97.3 0.00014 4.7E-09 63.9 3.7 22 200-221 7-28 (171)
165 2ius_A DNA translocase FTSK; n 97.3 0.00083 2.8E-08 69.2 9.9 76 262-350 297-375 (512)
166 2ze6_A Isopentenyl transferase 97.3 0.00013 4.5E-09 68.4 3.6 32 204-235 3-34 (253)
167 2cdn_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 64.4 4.4 33 201-233 19-51 (201)
168 2q6t_A DNAB replication FORK h 97.3 0.00047 1.6E-08 70.0 7.9 38 198-235 196-237 (444)
169 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.9E-09 65.6 4.3 33 201-233 3-35 (220)
170 2c95_A Adenylate kinase 1; tra 97.3 0.00018 6.1E-09 63.8 4.2 33 201-233 8-40 (196)
171 1vma_A Cell division protein F 97.2 0.0025 8.5E-08 61.4 12.4 73 200-272 102-197 (306)
172 1e6c_A Shikimate kinase; phosp 97.2 0.00018 6.3E-09 62.5 4.0 30 203-232 3-32 (173)
173 1tev_A UMP-CMP kinase; ploop, 97.2 0.00016 5.4E-09 63.9 3.6 36 202-239 3-38 (196)
174 3t61_A Gluconokinase; PSI-biol 97.2 0.00021 7.3E-09 64.1 4.5 31 202-232 18-48 (202)
175 3kl4_A SRP54, signal recogniti 97.2 0.0012 4.2E-08 66.6 10.4 197 201-411 96-342 (433)
176 2vli_A Antibiotic resistance p 97.2 0.00013 4.5E-09 64.0 2.9 30 202-231 5-34 (183)
177 1tf7_A KAIC; homohexamer, hexa 97.2 0.0012 3.9E-08 68.6 10.4 110 198-317 277-417 (525)
178 3e1s_A Exodeoxyribonuclease V, 97.2 0.00017 6E-09 75.6 4.2 34 202-235 204-240 (574)
179 3lw7_A Adenylate kinase relate 97.2 0.00019 6.6E-09 61.9 3.8 29 204-233 3-31 (179)
180 3cm0_A Adenylate kinase; ATP-b 97.2 0.00014 4.9E-09 64.0 2.9 30 202-231 4-33 (186)
181 1zd8_A GTP:AMP phosphotransfer 97.2 0.0002 6.7E-09 65.6 3.9 33 200-232 5-37 (227)
182 1ly1_A Polynucleotide kinase; 97.2 0.00014 4.7E-09 63.5 2.7 29 203-231 3-32 (181)
183 1g5t_A COB(I)alamin adenosyltr 97.2 0.0015 5.3E-08 58.6 9.4 117 203-337 29-178 (196)
184 3be4_A Adenylate kinase; malar 97.2 0.00019 6.5E-09 65.4 3.6 32 202-233 5-36 (217)
185 3umf_A Adenylate kinase; rossm 97.2 0.0002 7E-09 65.6 3.6 40 199-240 26-65 (217)
186 2pez_A Bifunctional 3'-phospho 97.2 0.00024 8.3E-09 62.4 4.0 38 201-238 4-44 (179)
187 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00056 1.9E-08 66.7 7.0 73 200-272 169-251 (330)
188 1tf7_A KAIC; homohexamer, hexa 97.2 0.0018 6.1E-08 67.1 11.1 114 198-320 35-188 (525)
189 3bh0_A DNAB-like replicative h 97.2 0.001 3.4E-08 64.4 8.6 38 198-235 64-104 (315)
190 2bwj_A Adenylate kinase 5; pho 97.2 0.00024 8.3E-09 63.1 3.9 36 202-239 12-47 (199)
191 4eun_A Thermoresistant glucoki 97.1 0.00027 9.3E-09 63.4 4.2 37 200-238 27-63 (200)
192 1kht_A Adenylate kinase; phosp 97.1 0.0002 6.9E-09 63.1 3.3 26 202-227 3-28 (192)
193 2ewv_A Twitching motility prot 97.1 0.00023 7.8E-09 70.7 4.0 78 194-271 128-219 (372)
194 1vt4_I APAF-1 related killer D 97.1 0.0015 5.1E-08 72.4 10.7 44 170-225 130-173 (1221)
195 2i3b_A HCR-ntpase, human cance 97.1 0.00043 1.5E-08 62.0 5.5 23 204-226 3-25 (189)
196 2fz4_A DNA repair protein RAD2 97.1 0.0011 3.8E-08 61.3 8.5 36 204-239 110-146 (237)
197 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 64.1 4.0 29 205-233 3-31 (216)
198 1ak2_A Adenylate kinase isoenz 97.1 0.00029 1E-08 64.8 4.4 32 202-233 16-47 (233)
199 1qf9_A UMP/CMP kinase, protein 97.1 0.00028 9.4E-09 62.2 4.0 31 202-232 6-36 (194)
200 1knq_A Gluconate kinase; ALFA/ 97.1 0.00026 8.8E-09 61.8 3.7 35 202-238 8-42 (175)
201 3fb4_A Adenylate kinase; psych 97.1 0.00027 9.3E-09 63.9 3.9 29 205-233 3-31 (216)
202 2pt5_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 60.8 3.9 29 204-232 2-30 (168)
203 1zak_A Adenylate kinase; ATP:A 97.1 0.00025 8.6E-09 64.6 3.5 31 201-231 4-34 (222)
204 3tlx_A Adenylate kinase 2; str 97.1 0.00028 9.5E-09 65.6 3.8 34 200-233 27-60 (243)
205 4g1u_C Hemin import ATP-bindin 97.1 0.0014 4.7E-08 61.9 8.6 45 261-318 165-209 (266)
206 1ukz_A Uridylate kinase; trans 97.1 0.00031 1.1E-08 62.9 3.8 32 202-233 15-46 (203)
207 3tui_C Methionine import ATP-b 97.1 0.0022 7.5E-08 63.3 10.2 49 257-318 177-225 (366)
208 1vpl_A ABC transporter, ATP-bi 97.1 0.0036 1.2E-07 58.7 11.1 29 198-226 37-65 (256)
209 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00018 6.3E-09 70.6 2.3 50 172-232 3-54 (359)
210 3uie_A Adenylyl-sulfate kinase 97.0 0.00037 1.3E-08 62.5 4.0 39 200-238 23-64 (200)
211 3gfo_A Cobalt import ATP-bindi 97.0 0.0019 6.6E-08 61.2 9.2 51 257-320 157-207 (275)
212 3sr0_A Adenylate kinase; phosp 97.0 0.00036 1.2E-08 63.4 3.8 34 205-240 3-36 (206)
213 3rlf_A Maltose/maltodextrin im 97.0 0.0021 7.1E-08 63.8 9.0 28 199-226 26-53 (381)
214 1nks_A Adenylate kinase; therm 97.0 0.00038 1.3E-08 61.3 3.3 35 204-238 3-40 (194)
215 2pbr_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 60.3 4.3 30 205-234 3-35 (195)
216 3crm_A TRNA delta(2)-isopenten 96.9 0.00038 1.3E-08 67.6 3.4 33 203-235 6-38 (323)
217 2v54_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 60.9 4.4 34 201-234 3-37 (204)
218 2ff7_A Alpha-hemolysin translo 96.9 0.0042 1.5E-07 57.8 10.4 28 199-226 32-59 (247)
219 1cke_A CK, MSSA, protein (cyti 96.9 0.00057 1.9E-08 62.1 4.3 30 202-231 5-34 (227)
220 1e4v_A Adenylate kinase; trans 96.9 0.00048 1.6E-08 62.4 3.8 30 204-233 2-31 (214)
221 2yyz_A Sugar ABC transporter, 96.9 0.0035 1.2E-07 61.7 10.0 28 199-226 26-53 (359)
222 3fvq_A Fe(3+) IONS import ATP- 96.9 0.004 1.4E-07 61.3 10.4 28 199-226 27-54 (359)
223 2jaq_A Deoxyguanosine kinase; 96.9 0.00052 1.8E-08 61.1 3.6 29 204-232 2-30 (205)
224 3nwj_A ATSK2; P loop, shikimat 96.9 0.00042 1.4E-08 64.9 3.1 32 202-233 48-79 (250)
225 1jjv_A Dephospho-COA kinase; P 96.9 0.00075 2.6E-08 60.5 4.7 33 204-239 4-36 (206)
226 2ixe_A Antigen peptide transpo 96.9 0.0029 1E-07 59.8 9.0 29 198-226 41-69 (271)
227 2bbw_A Adenylate kinase 4, AK4 96.9 0.00063 2.1E-08 63.1 4.0 31 201-231 26-56 (246)
228 1q57_A DNA primase/helicase; d 96.9 0.0023 8E-08 65.8 8.7 38 198-235 238-279 (503)
229 2xb4_A Adenylate kinase; ATP-b 96.9 0.00061 2.1E-08 62.3 3.8 33 205-239 3-35 (223)
230 1z47_A CYSA, putative ABC-tran 96.9 0.0033 1.1E-07 61.8 9.3 28 199-226 38-65 (355)
231 2grj_A Dephospho-COA kinase; T 96.8 0.00099 3.4E-08 59.7 5.0 36 204-241 14-49 (192)
232 2it1_A 362AA long hypothetical 96.8 0.0035 1.2E-07 61.8 9.3 28 199-226 26-53 (362)
233 2z0h_A DTMP kinase, thymidylat 96.8 0.00081 2.8E-08 59.5 4.3 31 205-235 3-36 (197)
234 3b6e_A Interferon-induced heli 96.8 0.0052 1.8E-07 54.8 9.7 23 203-225 49-71 (216)
235 3thx_B DNA mismatch repair pro 96.8 0.0037 1.3E-07 68.8 10.2 108 200-320 671-799 (918)
236 2if2_A Dephospho-COA kinase; a 96.8 0.00071 2.4E-08 60.5 3.7 29 204-233 3-31 (204)
237 1w4r_A Thymidine kinase; type 96.8 0.0038 1.3E-07 56.0 8.3 69 202-273 20-103 (195)
238 3d31_A Sulfate/molybdate ABC t 96.8 0.0048 1.6E-07 60.5 9.7 28 199-226 23-50 (348)
239 3r20_A Cytidylate kinase; stru 96.8 0.00084 2.9E-08 62.2 4.1 30 202-231 9-38 (233)
240 3nh6_A ATP-binding cassette SU 96.8 0.0031 1E-07 60.8 8.2 29 198-226 76-104 (306)
241 2wwf_A Thymidilate kinase, put 96.8 0.00036 1.2E-08 62.7 1.5 30 201-230 9-38 (212)
242 2xau_A PRE-mRNA-splicing facto 96.7 0.0026 8.9E-08 69.0 8.3 64 161-225 68-132 (773)
243 3ake_A Cytidylate kinase; CMP 96.7 0.0008 2.7E-08 60.1 3.7 30 204-233 4-33 (208)
244 2plr_A DTMP kinase, probable t 96.7 0.001 3.5E-08 59.5 4.3 28 202-229 4-31 (213)
245 1v43_A Sugar-binding transport 96.7 0.0035 1.2E-07 62.0 8.5 28 199-226 34-61 (372)
246 1nn5_A Similar to deoxythymidy 96.7 0.00042 1.4E-08 62.3 1.5 28 201-228 8-35 (215)
247 3bgw_A DNAB-like replicative h 96.7 0.0031 1.1E-07 63.9 8.0 38 198-235 193-233 (444)
248 4a1f_A DNAB helicase, replicat 96.7 0.0034 1.2E-07 61.3 7.9 38 198-235 42-82 (338)
249 2qor_A Guanylate kinase; phosp 96.7 0.001 3.6E-08 59.7 3.8 29 199-227 9-37 (204)
250 1uf9_A TT1252 protein; P-loop, 96.6 0.00099 3.4E-08 59.2 3.5 36 202-240 8-43 (203)
251 1g29_1 MALK, maltose transport 96.6 0.0039 1.3E-07 61.7 8.1 28 199-226 26-53 (372)
252 3a8t_A Adenylate isopentenyltr 96.6 0.00072 2.5E-08 65.9 2.6 35 202-236 40-74 (339)
253 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.3E-08 61.5 4.1 31 201-231 26-56 (252)
254 2yvu_A Probable adenylyl-sulfa 96.6 0.0015 5.1E-08 57.6 4.4 38 201-238 12-52 (186)
255 3thx_A DNA mismatch repair pro 96.6 0.0061 2.1E-07 67.3 9.9 23 202-224 662-684 (934)
256 1kgd_A CASK, peripheral plasma 96.6 0.0012 4E-08 58.2 3.5 27 201-227 4-30 (180)
257 1uj2_A Uridine-cytidine kinase 96.6 0.0016 5.4E-08 60.6 4.4 40 201-240 21-68 (252)
258 2j41_A Guanylate kinase; GMP, 96.5 0.0011 3.9E-08 59.1 3.2 27 200-226 4-30 (207)
259 3foz_A TRNA delta(2)-isopenten 96.5 0.0011 3.9E-08 63.8 3.3 34 202-235 10-43 (316)
260 1xx6_A Thymidine kinase; NESG, 96.5 0.0038 1.3E-07 55.9 6.6 70 202-273 8-93 (191)
261 2qt1_A Nicotinamide riboside k 96.5 0.00079 2.7E-08 60.5 2.1 31 201-231 20-51 (207)
262 3llm_A ATP-dependent RNA helic 96.5 0.0081 2.8E-07 55.1 9.0 22 202-223 76-97 (235)
263 4a82_A Cystic fibrosis transme 96.5 0.0056 1.9E-07 64.1 8.7 29 198-226 363-391 (578)
264 1m7g_A Adenylylsulfate kinase; 96.5 0.0013 4.5E-08 59.4 3.4 39 200-238 23-65 (211)
265 1vht_A Dephospho-COA kinase; s 96.5 0.0014 4.9E-08 59.2 3.6 30 202-232 4-33 (218)
266 2h92_A Cytidylate kinase; ross 96.5 0.0017 5.9E-08 58.6 4.1 31 202-232 3-33 (219)
267 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 5.8E-08 59.7 4.1 33 200-232 14-46 (236)
268 1p9r_A General secretion pathw 96.5 0.0052 1.8E-07 61.8 7.9 50 164-227 143-192 (418)
269 2gxq_A Heat resistant RNA depe 96.5 0.0084 2.9E-07 53.3 8.5 20 202-221 38-57 (207)
270 3tau_A Guanylate kinase, GMP k 96.5 0.0018 6.2E-08 58.4 4.0 27 201-227 7-33 (208)
271 2px0_A Flagellar biosynthesis 96.4 0.014 4.7E-07 55.9 10.3 36 201-236 104-143 (296)
272 3zvl_A Bifunctional polynucleo 96.4 0.0024 8.2E-08 64.2 5.2 31 201-231 257-287 (416)
273 1rz3_A Hypothetical protein rb 96.4 0.0051 1.7E-07 55.0 6.8 37 200-236 20-59 (201)
274 1t6n_A Probable ATP-dependent 96.4 0.021 7.3E-07 51.3 11.1 58 165-225 14-74 (220)
275 2yhs_A FTSY, cell division pro 96.4 0.018 6.2E-07 58.9 11.5 27 200-226 291-317 (503)
276 4f4c_A Multidrug resistance pr 96.4 0.0085 2.9E-07 68.8 9.9 30 198-227 440-469 (1321)
277 3tr0_A Guanylate kinase, GMP k 96.4 0.0017 5.9E-08 57.8 3.4 28 200-227 5-32 (205)
278 3c8u_A Fructokinase; YP_612366 96.4 0.0017 5.8E-08 58.5 3.3 28 200-227 20-47 (208)
279 3b5x_A Lipid A export ATP-bind 96.4 0.012 4.3E-07 61.5 10.4 29 198-226 365-393 (582)
280 3qf4_A ABC transporter, ATP-bi 96.4 0.0068 2.3E-07 63.6 8.3 29 198-226 365-393 (587)
281 2bdt_A BH3686; alpha-beta prot 96.3 0.0022 7.6E-08 56.6 3.8 34 204-238 4-37 (189)
282 3b60_A Lipid A export ATP-bind 96.3 0.012 4.2E-07 61.6 10.0 29 198-226 365-393 (582)
283 3exa_A TRNA delta(2)-isopenten 96.3 0.0017 5.8E-08 62.6 3.1 33 203-235 4-36 (322)
284 2oap_1 GSPE-2, type II secreti 96.3 0.002 6.7E-08 66.6 3.7 71 201-271 259-343 (511)
285 3d3q_A TRNA delta(2)-isopenten 96.3 0.0017 5.9E-08 63.4 3.0 33 203-235 8-40 (340)
286 1ltq_A Polynucleotide kinase; 96.3 0.0017 5.7E-08 61.9 2.9 29 203-231 3-32 (301)
287 1wb9_A DNA mismatch repair pro 96.3 0.018 6.1E-07 62.6 11.2 25 201-225 606-630 (800)
288 1ex7_A Guanylate kinase; subst 96.3 0.0026 9E-08 56.7 3.9 27 203-229 2-28 (186)
289 4b3f_X DNA-binding protein smu 96.3 0.014 4.8E-07 61.9 10.3 49 172-235 190-241 (646)
290 3qf4_B Uncharacterized ABC tra 96.2 0.011 3.9E-07 62.1 9.2 29 198-226 377-405 (598)
291 1lvg_A Guanylate kinase, GMP k 96.2 0.0021 7.2E-08 57.6 3.1 27 201-227 3-29 (198)
292 1htw_A HI0065; nucleotide-bind 96.2 0.0023 8E-08 55.4 3.3 29 198-226 29-57 (158)
293 2f6r_A COA synthase, bifunctio 96.2 0.0025 8.4E-08 60.5 3.5 34 202-238 75-108 (281)
294 2qmh_A HPR kinase/phosphorylas 96.2 0.0017 5.9E-08 58.5 2.2 32 202-234 34-65 (205)
295 1z6g_A Guanylate kinase; struc 96.2 0.0025 8.7E-08 58.0 3.4 28 199-226 20-47 (218)
296 3a00_A Guanylate kinase, GMP k 96.2 0.0025 8.7E-08 56.3 3.3 25 203-227 2-26 (186)
297 3asz_A Uridine kinase; cytidin 96.2 0.0019 6.6E-08 58.0 2.5 27 201-227 5-31 (211)
298 1zu4_A FTSY; GTPase, signal re 96.2 0.0084 2.9E-07 58.0 7.2 37 199-235 102-141 (320)
299 1w36_D RECD, exodeoxyribonucle 96.2 0.0048 1.7E-07 65.1 5.8 25 202-226 164-188 (608)
300 3fdi_A Uncharacterized protein 96.1 0.0031 1.1E-07 56.8 3.7 29 203-231 7-35 (201)
301 3eph_A TRNA isopentenyltransfe 96.1 0.0023 7.8E-08 63.8 2.7 33 202-234 2-34 (409)
302 2axn_A 6-phosphofructo-2-kinas 96.1 0.0097 3.3E-07 61.5 7.6 38 202-239 35-75 (520)
303 1ls1_A Signal recognition part 96.1 0.04 1.4E-06 52.5 11.4 73 201-273 97-192 (295)
304 3ney_A 55 kDa erythrocyte memb 96.0 0.0048 1.6E-07 55.5 4.4 28 200-227 17-44 (197)
305 3j16_B RLI1P; ribosome recycli 96.0 0.013 4.5E-07 61.7 8.3 27 200-226 101-127 (608)
306 4f4c_A Multidrug resistance pr 96.0 0.015 5.1E-07 66.8 9.4 29 198-226 1101-1129(1321)
307 2v9p_A Replication protein E1; 96.0 0.0037 1.3E-07 60.2 3.6 33 197-229 121-153 (305)
308 1znw_A Guanylate kinase, GMP k 96.0 0.0037 1.3E-07 56.2 3.3 29 199-227 17-45 (207)
309 2j37_W Signal recognition part 95.9 0.011 3.8E-07 60.8 7.0 73 201-273 100-195 (504)
310 3e70_C DPA, signal recognition 95.9 0.01 3.6E-07 57.6 6.5 27 200-226 127-153 (328)
311 2v3c_C SRP54, signal recogniti 95.9 0.013 4.3E-07 59.2 7.3 36 201-236 98-136 (432)
312 2j9r_A Thymidine kinase; TK1, 95.9 0.012 4E-07 53.6 6.3 30 205-234 31-63 (214)
313 1hv8_A Putative ATP-dependent 95.9 0.026 8.8E-07 54.3 9.2 58 165-225 6-67 (367)
314 2jeo_A Uridine-cytidine kinase 95.9 0.0036 1.2E-07 57.9 2.9 30 200-229 23-52 (245)
315 1yqt_A RNAse L inhibitor; ATP- 95.9 0.017 5.8E-07 60.0 8.3 28 199-226 44-71 (538)
316 1j8m_F SRP54, signal recogniti 95.9 0.015 5.1E-07 55.7 7.2 72 202-273 98-192 (297)
317 2o8b_B DNA mismatch repair pro 95.8 0.031 1E-06 62.4 10.7 104 202-318 789-913 (1022)
318 3b9q_A Chloroplast SRP recepto 95.8 0.0046 1.6E-07 59.4 3.4 28 199-226 97-124 (302)
319 4aby_A DNA repair protein RECN 95.8 0.025 8.5E-07 56.2 9.0 44 260-318 312-357 (415)
320 2va8_A SSO2462, SKI2-type heli 95.8 0.036 1.2E-06 59.3 10.7 59 164-222 7-66 (715)
321 1vec_A ATP-dependent RNA helic 95.8 0.029 9.9E-07 49.7 8.5 20 202-221 40-59 (206)
322 2xxa_A Signal recognition part 95.8 0.017 5.8E-07 58.3 7.6 73 200-272 98-194 (433)
323 3ozx_A RNAse L inhibitor; ATP 95.8 0.033 1.1E-06 57.8 9.9 55 251-318 393-447 (538)
324 1x6v_B Bifunctional 3'-phospho 95.7 0.0056 1.9E-07 64.6 4.0 38 201-238 51-91 (630)
325 1s96_A Guanylate kinase, GMP k 95.7 0.0052 1.8E-07 56.2 3.3 29 199-227 13-41 (219)
326 3gmt_A Adenylate kinase; ssgci 95.7 0.0056 1.9E-07 56.4 3.5 35 204-240 10-44 (230)
327 3ozx_A RNAse L inhibitor; ATP 95.7 0.022 7.6E-07 59.1 8.3 50 253-317 148-197 (538)
328 2ffh_A Protein (FFH); SRP54, s 95.7 0.032 1.1E-06 56.0 9.0 73 201-273 97-192 (425)
329 1odf_A YGR205W, hypothetical 3 95.6 0.0032 1.1E-07 60.1 1.6 28 200-227 29-56 (290)
330 2og2_A Putative signal recogni 95.6 0.0056 1.9E-07 60.3 3.3 28 199-226 154-181 (359)
331 3lnc_A Guanylate kinase, GMP k 95.6 0.003 1E-07 57.7 1.3 28 199-226 24-52 (231)
332 1gtv_A TMK, thymidylate kinase 95.6 0.0026 9E-08 57.0 0.8 24 204-227 2-25 (214)
333 2zj8_A DNA helicase, putative 95.6 0.03 1E-06 60.0 9.2 21 200-220 37-57 (720)
334 2orv_A Thymidine kinase; TP4A 95.6 0.042 1.4E-06 50.5 8.8 68 203-273 20-102 (234)
335 1nrj_B SR-beta, signal recogni 95.6 0.082 2.8E-06 47.0 10.7 26 201-226 11-36 (218)
336 1c9k_A COBU, adenosylcobinamid 95.5 0.0079 2.7E-07 53.3 3.6 32 205-237 2-33 (180)
337 3hdt_A Putative kinase; struct 95.5 0.0072 2.5E-07 55.4 3.5 30 203-232 15-44 (223)
338 3tbk_A RIG-I helicase domain; 95.5 0.11 3.8E-06 52.9 12.7 34 203-236 20-61 (555)
339 4eaq_A DTMP kinase, thymidylat 95.5 0.0072 2.5E-07 55.5 3.3 33 201-233 25-59 (229)
340 3iuy_A Probable ATP-dependent 95.5 0.014 4.6E-07 53.0 5.1 57 162-221 16-76 (228)
341 1s2m_A Putative ATP-dependent 95.5 0.037 1.3E-06 54.3 8.6 58 163-223 19-79 (400)
342 3bk7_A ABC transporter ATP-bin 95.4 0.075 2.6E-06 55.9 11.3 28 199-226 114-141 (607)
343 2iw3_A Elongation factor 3A; a 95.4 0.026 9E-07 62.3 7.8 26 199-224 458-483 (986)
344 3tqf_A HPR(Ser) kinase; transf 95.4 0.0088 3E-07 52.6 3.3 24 202-225 16-39 (181)
345 1ewq_A DNA mismatch repair pro 95.4 0.046 1.6E-06 59.1 9.5 24 202-225 576-599 (765)
346 3lxw_A GTPase IMAP family memb 95.3 0.039 1.3E-06 51.0 7.7 24 202-225 21-44 (247)
347 1a7j_A Phosphoribulokinase; tr 95.3 0.0068 2.3E-07 57.8 2.5 38 202-239 5-45 (290)
348 3tif_A Uncharacterized ABC tra 95.3 0.0053 1.8E-07 56.7 1.6 28 199-226 28-55 (235)
349 3g5u_A MCG1178, multidrug resi 95.3 0.025 8.7E-07 64.7 7.5 29 198-226 412-440 (1284)
350 2cbz_A Multidrug resistance-as 95.3 0.0051 1.7E-07 56.9 1.4 29 198-226 27-55 (237)
351 3pey_A ATP-dependent RNA helic 95.2 0.039 1.3E-06 53.6 7.9 56 165-223 5-65 (395)
352 1sky_E F1-ATPase, F1-ATP synth 95.2 0.028 9.6E-07 57.1 6.9 25 202-226 151-175 (473)
353 1bif_A 6-phosphofructo-2-kinas 95.1 0.088 3E-06 53.5 10.4 27 201-227 38-64 (469)
354 1m8p_A Sulfate adenylyltransfe 95.1 0.0099 3.4E-07 62.2 3.3 37 202-238 396-436 (573)
355 2pcj_A ABC transporter, lipopr 95.1 0.0051 1.7E-07 56.4 1.0 28 199-226 27-54 (224)
356 3cr8_A Sulfate adenylyltranfer 95.1 0.019 6.6E-07 59.7 5.4 41 200-240 367-411 (552)
357 2qm8_A GTPase/ATPase; G protei 95.1 0.037 1.3E-06 53.9 7.1 28 199-226 52-79 (337)
358 2v6i_A RNA helicase; membrane, 95.1 0.076 2.6E-06 53.3 9.6 22 202-223 2-24 (431)
359 3aez_A Pantothenate kinase; tr 95.0 0.01 3.5E-07 57.2 3.0 28 199-226 87-114 (312)
360 1xti_A Probable ATP-dependent 95.0 0.21 7.1E-06 48.5 12.5 56 166-224 9-67 (391)
361 3bk7_A ABC transporter ATP-bin 95.0 0.093 3.2E-06 55.2 10.5 27 200-226 380-406 (607)
362 3q72_A GTP-binding protein RAD 95.0 0.03 1E-06 47.3 5.6 21 204-224 4-24 (166)
363 1b0u_A Histidine permease; ABC 95.0 0.0066 2.2E-07 57.0 1.5 28 199-226 29-56 (262)
364 1sq5_A Pantothenate kinase; P- 95.0 0.0092 3.1E-07 57.3 2.5 28 200-227 78-105 (308)
365 2onk_A Molybdate/tungstate ABC 95.0 0.0076 2.6E-07 55.9 1.8 28 198-226 21-48 (240)
366 1sgw_A Putative ABC transporte 95.0 0.0063 2.2E-07 55.4 1.1 28 199-226 32-59 (214)
367 3ice_A Transcription terminati 95.0 0.1 3.5E-06 51.7 9.8 28 199-226 171-198 (422)
368 3p32_A Probable GTPase RV1496/ 95.0 0.046 1.6E-06 53.4 7.5 26 201-226 78-103 (355)
369 1np6_A Molybdopterin-guanine d 94.9 0.014 4.7E-07 51.4 3.2 26 201-226 5-30 (174)
370 1rj9_A FTSY, signal recognitio 94.9 0.013 4.3E-07 56.4 3.2 26 201-226 101-126 (304)
371 2zu0_C Probable ATP-dependent 94.9 0.0096 3.3E-07 56.1 2.2 28 198-225 42-69 (267)
372 2ghi_A Transport protein; mult 94.9 0.0076 2.6E-07 56.5 1.4 29 198-226 42-70 (260)
373 1mv5_A LMRA, multidrug resista 94.9 0.0065 2.2E-07 56.3 1.0 28 199-226 25-52 (243)
374 1g6h_A High-affinity branched- 94.9 0.0067 2.3E-07 56.8 1.1 49 258-320 168-216 (257)
375 2olj_A Amino acid ABC transpor 94.8 0.0084 2.9E-07 56.4 1.6 29 198-226 46-74 (263)
376 2d2e_A SUFC protein; ABC-ATPas 94.8 0.008 2.7E-07 56.0 1.4 27 199-225 26-52 (250)
377 2pze_A Cystic fibrosis transme 94.8 0.007 2.4E-07 55.6 1.0 28 199-226 31-58 (229)
378 2ocp_A DGK, deoxyguanosine kin 94.8 0.016 5.4E-07 53.3 3.4 26 202-227 2-27 (241)
379 3kta_A Chromosome segregation 94.8 0.016 5.5E-07 50.5 3.3 25 203-227 27-51 (182)
380 3e2i_A Thymidine kinase; Zn-bi 94.8 0.14 4.6E-06 46.6 9.4 22 203-224 29-51 (219)
381 3tqc_A Pantothenate kinase; bi 94.7 0.025 8.7E-07 54.7 4.8 27 201-227 91-117 (321)
382 2yz2_A Putative ABC transporte 94.7 0.0086 2.9E-07 56.3 1.4 49 258-320 153-201 (266)
383 1p5z_B DCK, deoxycytidine kina 94.7 0.0073 2.5E-07 56.4 0.9 27 201-227 23-49 (263)
384 1ji0_A ABC transporter; ATP bi 94.7 0.0079 2.7E-07 55.7 1.1 28 199-226 29-56 (240)
385 4i1u_A Dephospho-COA kinase; s 94.7 0.022 7.6E-07 51.6 4.0 36 203-241 10-45 (210)
386 2j0s_A ATP-dependent RNA helic 94.7 0.066 2.3E-06 52.6 7.9 57 164-223 36-95 (410)
387 2p6r_A Afuhel308 helicase; pro 94.7 0.022 7.4E-07 61.0 4.6 22 201-222 39-60 (702)
388 3j16_B RLI1P; ribosome recycli 94.7 0.11 3.8E-06 54.6 9.9 53 253-318 477-529 (608)
389 2qi9_C Vitamin B12 import ATP- 94.7 0.0079 2.7E-07 56.1 1.0 28 199-226 23-50 (249)
390 3g5u_A MCG1178, multidrug resi 94.6 0.06 2.1E-06 61.6 8.3 28 199-226 1056-1083(1284)
391 1xjc_A MOBB protein homolog; s 94.6 0.019 6.4E-07 50.3 3.1 25 202-226 4-28 (169)
392 3vkw_A Replicase large subunit 94.6 0.022 7.5E-07 57.4 4.0 25 201-225 160-184 (446)
393 2nq2_C Hypothetical ABC transp 94.5 0.0085 2.9E-07 56.0 0.9 28 199-226 28-55 (253)
394 2ihy_A ABC transporter, ATP-bi 94.5 0.0087 3E-07 56.8 1.0 28 199-226 44-71 (279)
395 3b85_A Phosphate starvation-in 94.5 0.011 3.8E-07 53.5 1.6 25 201-225 21-45 (208)
396 3pqc_A Probable GTP-binding pr 94.5 0.13 4.3E-06 44.5 8.4 23 203-225 24-46 (195)
397 3lxx_A GTPase IMAP family memb 94.5 0.063 2.2E-06 49.0 6.7 24 202-225 29-52 (239)
398 2fwr_A DNA repair protein RAD2 94.5 0.032 1.1E-06 56.3 5.1 37 203-239 109-146 (472)
399 2gza_A Type IV secretion syste 94.5 0.011 3.8E-07 58.1 1.6 74 199-272 172-263 (361)
400 2f7s_A C25KG, RAS-related prot 94.4 0.3 1E-05 43.2 11.0 22 204-225 27-48 (217)
401 2gk6_A Regulator of nonsense t 94.4 0.03 1E-06 59.2 4.8 22 204-225 197-218 (624)
402 2ged_A SR-beta, signal recogni 94.4 0.039 1.3E-06 48.1 4.9 27 200-226 46-72 (193)
403 1wp9_A ATP-dependent RNA helic 94.4 0.2 6.9E-06 49.5 10.7 37 204-240 25-66 (494)
404 3l9o_A ATP-dependent RNA helic 94.4 0.072 2.5E-06 60.0 8.0 34 202-235 199-235 (1108)
405 3dkp_A Probable ATP-dependent 94.3 0.073 2.5E-06 48.6 6.8 19 202-220 66-84 (245)
406 1lw7_A Transcriptional regulat 94.2 0.019 6.5E-07 56.4 2.7 28 202-229 170-197 (365)
407 3h1t_A Type I site-specific re 94.2 0.075 2.6E-06 55.4 7.5 25 202-226 198-222 (590)
408 1oxx_K GLCV, glucose, ABC tran 94.2 0.011 3.7E-07 58.1 0.9 28 199-226 28-55 (353)
409 2bbs_A Cystic fibrosis transme 94.2 0.013 4.5E-07 55.9 1.3 28 199-226 61-88 (290)
410 4a2p_A RIG-I, retinoic acid in 94.1 0.36 1.2E-05 49.2 12.2 34 203-236 23-64 (556)
411 3gd7_A Fusion complex of cysti 94.1 0.017 5.7E-07 57.5 2.0 28 198-225 43-70 (390)
412 3t1o_A Gliding protein MGLA; G 94.1 0.095 3.3E-06 45.4 6.8 24 203-226 15-38 (198)
413 3tmk_A Thymidylate kinase; pho 94.1 0.048 1.7E-06 49.6 4.9 30 201-230 4-33 (216)
414 1fzq_A ADP-ribosylation factor 94.0 0.11 3.6E-06 45.1 6.9 24 202-225 16-39 (181)
415 3ux8_A Excinuclease ABC, A sub 94.0 0.11 3.9E-06 55.1 8.4 43 262-318 565-607 (670)
416 2f9l_A RAB11B, member RAS onco 94.0 0.026 8.7E-07 49.9 2.8 22 204-225 7-28 (199)
417 1oix_A RAS-related protein RAB 94.0 0.025 8.6E-07 49.7 2.7 23 204-226 31-53 (191)
418 1g8f_A Sulfate adenylyltransfe 94.0 0.02 7E-07 58.8 2.4 27 202-228 395-421 (511)
419 2wsm_A Hydrogenase expression/ 93.9 0.029 1E-06 50.2 3.1 26 202-227 30-55 (221)
420 3v9p_A DTMP kinase, thymidylat 93.9 0.043 1.5E-06 50.3 4.3 25 202-226 25-49 (227)
421 2p67_A LAO/AO transport system 93.9 0.11 3.7E-06 50.5 7.4 27 200-226 54-80 (341)
422 2f1r_A Molybdopterin-guanine d 93.9 0.018 6.1E-07 50.5 1.6 35 203-237 3-42 (171)
423 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.026 8.8E-07 57.4 2.9 29 198-226 134-162 (460)
424 3dz8_A RAS-related protein RAB 93.9 0.3 1E-05 42.4 9.6 23 204-226 25-47 (191)
425 2pjz_A Hypothetical protein ST 93.9 0.017 5.8E-07 54.3 1.4 27 199-226 28-54 (263)
426 3sop_A Neuronal-specific septi 93.8 0.025 8.5E-07 53.3 2.6 23 204-226 4-26 (270)
427 3ly5_A ATP-dependent RNA helic 93.8 0.087 3E-06 49.0 6.3 19 203-221 92-110 (262)
428 2gks_A Bifunctional SAT/APS ki 93.8 0.089 3.1E-06 54.6 6.9 38 202-239 372-412 (546)
429 3def_A T7I23.11 protein; chlor 93.8 0.15 5.1E-06 47.3 7.9 24 202-225 36-59 (262)
430 4edh_A DTMP kinase, thymidylat 93.8 0.03 1E-06 50.8 2.9 32 202-233 6-40 (213)
431 3iev_A GTP-binding protein ERA 93.7 0.15 5E-06 48.8 7.8 24 202-225 10-33 (308)
432 3fmp_B ATP-dependent RNA helic 93.7 0.22 7.5E-06 50.2 9.5 57 165-224 92-154 (479)
433 2dpy_A FLII, flagellum-specifi 93.7 0.051 1.7E-06 54.8 4.7 38 199-236 154-193 (438)
434 2xtp_A GTPase IMAP family memb 93.6 0.31 1.1E-05 44.8 9.7 24 202-225 22-45 (260)
435 3lv8_A DTMP kinase, thymidylat 93.6 0.034 1.2E-06 51.3 3.1 25 202-226 27-51 (236)
436 2dyk_A GTP-binding protein; GT 93.6 0.035 1.2E-06 46.5 2.9 22 204-225 3-24 (161)
437 2wjy_A Regulator of nonsense t 93.6 0.051 1.8E-06 59.0 4.8 22 204-225 373-394 (800)
438 2ykg_A Probable ATP-dependent 93.6 0.37 1.3E-05 50.9 11.5 23 202-224 28-50 (696)
439 3ux8_A Excinuclease ABC, A sub 93.5 0.17 5.8E-06 53.8 8.7 50 254-317 213-264 (670)
440 1zd9_A ADP-ribosylation factor 93.5 0.23 7.8E-06 43.0 8.2 23 203-225 23-45 (188)
441 1nij_A Hypothetical protein YJ 93.5 0.065 2.2E-06 51.6 4.9 23 204-226 6-28 (318)
442 2obl_A ESCN; ATPase, hydrolase 93.5 0.046 1.6E-06 53.4 3.9 31 199-229 68-98 (347)
443 3k53_A Ferrous iron transport 93.5 0.09 3.1E-06 49.1 5.8 23 203-225 4-26 (271)
444 2hf9_A Probable hydrogenase ni 93.5 0.061 2.1E-06 48.3 4.4 25 202-226 38-62 (226)
445 1z2a_A RAS-related protein RAB 93.4 0.038 1.3E-06 46.6 2.8 23 203-225 6-28 (168)
446 4ag6_A VIRB4 ATPase, type IV s 93.4 0.071 2.4E-06 52.7 5.1 35 201-235 34-71 (392)
447 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.039 1.3E-06 47.0 2.7 24 203-226 24-47 (149)
448 1gm5_A RECG; helicase, replica 93.4 0.34 1.2E-05 52.4 10.7 36 201-236 388-426 (780)
449 2qu8_A Putative nucleolar GTP- 93.3 0.32 1.1E-05 43.7 9.0 23 203-225 30-52 (228)
450 1kao_A RAP2A; GTP-binding prot 93.3 0.042 1.4E-06 46.1 2.9 22 204-225 5-26 (167)
451 2ce2_X GTPase HRAS; signaling 93.3 0.039 1.3E-06 46.2 2.7 22 204-225 5-26 (166)
452 2wji_A Ferrous iron transport 93.2 0.041 1.4E-06 46.9 2.7 22 204-225 5-26 (165)
453 2zej_A Dardarin, leucine-rich 93.2 0.034 1.2E-06 48.3 2.2 21 204-224 4-24 (184)
454 2qag_B Septin-6, protein NEDD5 93.2 0.039 1.3E-06 55.5 2.8 28 198-225 36-65 (427)
455 2p5s_A RAS and EF-hand domain 93.2 0.039 1.3E-06 48.6 2.5 25 201-225 27-51 (199)
456 3ld9_A DTMP kinase, thymidylat 93.1 0.044 1.5E-06 50.2 2.9 27 202-228 21-47 (223)
457 1ek0_A Protein (GTP-binding pr 93.1 0.045 1.5E-06 46.1 2.8 22 204-225 5-26 (170)
458 2vp4_A Deoxynucleoside kinase; 93.1 0.044 1.5E-06 50.0 2.9 30 201-231 19-48 (230)
459 1u8z_A RAS-related protein RAL 93.1 0.046 1.6E-06 45.9 2.8 23 203-225 5-27 (168)
460 2lkc_A Translation initiation 93.1 0.051 1.8E-06 46.4 3.1 24 201-224 7-30 (178)
461 1z0j_A RAB-22, RAS-related pro 93.1 0.048 1.6E-06 46.1 2.9 23 203-225 7-29 (170)
462 1pui_A ENGB, probable GTP-bind 93.0 0.02 6.8E-07 50.8 0.4 28 198-225 22-49 (210)
463 1wms_A RAB-9, RAB9, RAS-relate 93.0 0.049 1.7E-06 46.5 2.9 23 203-225 8-30 (177)
464 3o8b_A HCV NS3 protease/helica 93.0 1 3.5E-05 47.6 13.5 35 201-235 231-265 (666)
465 2nzj_A GTP-binding protein REM 93.0 0.047 1.6E-06 46.4 2.7 23 203-225 5-27 (175)
466 1z08_A RAS-related protein RAB 93.0 0.05 1.7E-06 46.0 2.8 23 203-225 7-29 (170)
467 1g16_A RAS-related protein SEC 92.9 0.048 1.6E-06 46.0 2.7 22 204-225 5-26 (170)
468 1ky3_A GTP-binding protein YPT 92.9 0.051 1.8E-06 46.4 2.9 24 202-225 8-31 (182)
469 2erx_A GTP-binding protein DI- 92.9 0.047 1.6E-06 46.1 2.6 22 204-225 5-26 (172)
470 4tmk_A Protein (thymidylate ki 92.9 0.055 1.9E-06 49.1 3.1 25 202-226 3-27 (213)
471 2wjg_A FEOB, ferrous iron tran 92.8 0.046 1.6E-06 47.3 2.5 23 203-225 8-30 (188)
472 2qtf_A Protein HFLX, GTP-bindi 92.8 0.16 5.5E-06 49.8 6.7 22 204-225 181-202 (364)
473 1ko7_A HPR kinase/phosphatase; 92.8 0.06 2.1E-06 51.8 3.4 28 202-230 144-171 (314)
474 1upt_A ARL1, ADP-ribosylation 92.8 0.056 1.9E-06 45.7 2.9 25 201-225 6-30 (171)
475 1qhl_A Protein (cell division 92.8 0.024 8.3E-07 52.0 0.6 22 205-226 30-51 (227)
476 1r2q_A RAS-related protein RAB 92.8 0.055 1.9E-06 45.6 2.8 22 204-225 8-29 (170)
477 1c1y_A RAS-related protein RAP 92.7 0.056 1.9E-06 45.5 2.8 22 204-225 5-26 (167)
478 2b6h_A ADP-ribosylation factor 92.7 0.057 2E-06 47.3 3.0 30 195-224 22-51 (192)
479 2xzl_A ATP-dependent helicase 92.7 0.076 2.6E-06 57.7 4.5 21 204-224 377-397 (802)
480 2hxs_A RAB-26, RAS-related pro 92.7 0.057 2E-06 46.1 2.8 23 203-225 7-29 (178)
481 3bc1_A RAS-related protein RAB 92.7 0.057 1.9E-06 46.6 2.8 23 203-225 12-34 (195)
482 1r8s_A ADP-ribosylation factor 92.6 0.059 2E-06 45.3 2.8 22 204-225 2-23 (164)
483 3q85_A GTP-binding protein REM 92.6 0.055 1.9E-06 45.7 2.7 21 204-224 4-24 (169)
484 1svi_A GTP-binding protein YSX 92.6 0.065 2.2E-06 46.6 3.2 25 201-225 22-46 (195)
485 2gj8_A MNME, tRNA modification 92.6 0.046 1.6E-06 47.1 2.1 24 202-225 4-27 (172)
486 3i5x_A ATP-dependent RNA helic 92.6 0.57 2E-05 48.2 10.8 19 201-219 110-128 (563)
487 2y8e_A RAB-protein 6, GH09086P 92.5 0.059 2E-06 45.9 2.7 23 203-225 15-37 (179)
488 4dsu_A GTPase KRAS, isoform 2B 92.5 0.063 2.1E-06 46.2 2.9 22 204-225 6-27 (189)
489 3iby_A Ferrous iron transport 92.5 0.19 6.4E-06 46.7 6.2 22 204-225 3-24 (256)
490 2fn4_A P23, RAS-related protei 92.4 0.062 2.1E-06 45.9 2.7 23 203-225 10-32 (181)
491 1z0f_A RAB14, member RAS oncog 92.4 0.064 2.2E-06 45.7 2.8 23 203-225 16-38 (179)
492 3oiy_A Reverse gyrase helicase 92.4 0.11 3.9E-06 51.2 5.0 23 202-224 36-58 (414)
493 1m7b_A RND3/RHOE small GTP-bin 92.4 0.061 2.1E-06 46.6 2.7 23 203-225 8-30 (184)
494 1moz_A ARL1, ADP-ribosylation 92.4 0.055 1.9E-06 46.5 2.3 25 200-224 16-40 (183)
495 4a2q_A RIG-I, retinoic acid in 92.4 0.85 2.9E-05 49.3 12.3 33 203-235 264-304 (797)
496 3clv_A RAB5 protein, putative; 92.4 0.066 2.3E-06 46.5 2.9 24 202-225 7-30 (208)
497 3con_A GTPase NRAS; structural 92.3 0.066 2.3E-06 46.4 2.8 22 204-225 23-44 (190)
498 1yks_A Genome polyprotein [con 92.3 0.52 1.8E-05 47.3 9.8 20 200-219 6-25 (440)
499 3fho_A ATP-dependent RNA helic 92.3 0.17 5.8E-06 51.8 6.3 20 202-221 158-177 (508)
500 2oil_A CATX-8, RAS-related pro 92.3 0.067 2.3E-06 46.6 2.8 23 203-225 26-48 (193)
No 1
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-88 Score=688.49 Aligned_cols=423 Identities=74% Similarity=1.225 Sum_probs=351.0
Q ss_pred CCccccc-ccCCCCCCChHhHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhh
Q 014332 4 EPEDEIK-DEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQE 82 (426)
Q Consensus 4 ~~~~~~~-~~~~~~~l~~~~~~~lk~~~~~~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (426)
.++++.+ +++++.+|+|.||++||+||+|||+..|+++|+.|+.+.++++.++|+||+|||||||+.|+++.+.+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (467)
T 4b4t_H 14 LEDDDKKPDDDKIVPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGE 93 (467)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------
T ss_pred CCccccccccccCCCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchHHhcc
Confidence 3344333 446678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeeeecCCC------------------------------CCCCeEEEeecccceEEEecCCCCCCCCCCCCcE
Q 014332 83 EQPLQVARCTKIISPN------------------------------SEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMR 132 (426)
Q Consensus 83 ~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (426)
+.|++|++|.+++..+ .++++++|+++++++|+|++.+.+++.+++||++
T Consensus 94 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~ 173 (467)
T 4b4t_H 94 EHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMR 173 (467)
T ss_dssp -CCSSSEEEEECCCC--------------------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCE
T ss_pred ccchhHhhhHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCE
Confidence 9999999999998542 2457899999999999999999999999999999
Q ss_pred EeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCC
Q 014332 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212 (426)
Q Consensus 133 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppG 212 (426)
|++++.++.+...||.++||.+..|.+++.|+++|+||||+++++++|++.|.+|+.+|++|.++|+.+|+|+|||||||
T Consensus 174 v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPG 253 (467)
T 4b4t_H 174 VGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPG 253 (467)
T ss_dssp ECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTT
T ss_pred EEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHH
Q 014332 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (426)
Q Consensus 213 tGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (426)
||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++.+|.+++.+.+...++++
T Consensus 254 TGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l 333 (467)
T 4b4t_H 254 TGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333 (467)
T ss_dssp SSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHH
T ss_pred CcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777788899999
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCC
Q 014332 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (426)
Q Consensus 293 ~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g 372 (426)
.++|++|+++....+|+||+|||+|+.||+|++||||||+.|+|++|+.++|.+||+.|++.+.+..+++++.||+.|+|
T Consensus 334 ~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~G 413 (467)
T 4b4t_H 334 LELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPN 413 (467)
T ss_dssp HHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCS
T ss_pred HHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCCCCCCcccCCC
Q 014332 373 STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 426 (426)
Q Consensus 373 ~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~~~~~~~~~~~ 426 (426)
|||+||.++|++|++.|+++++..||.+||..|+++++.++++++.+..|+.||
T Consensus 414 fSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 414 STGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999997
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-72 Score=563.71 Aligned_cols=376 Identities=47% Similarity=0.776 Sum_probs=345.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeeccc
Q 014332 32 GPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQI 111 (426)
Q Consensus 32 ~~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (426)
.||..+|+++|.++++...++++|...++. ...++....+.....++.|+.||++.+.++++ +++|+.+++
T Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~----~~iv~~~~~ 91 (405)
T 4b4t_J 21 PYFEQKIQETELKIRSKTENVRRLEAQRNA-----LNDKVRFIKDELRLLQEPGSYVGEVIKIVSDK----KVLVKVQPE 91 (405)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEEEEEECTTS----CEEEEESSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCceEEEEEEEecCC----eEEEEeCCC
Confidence 367889999999998888888877543222 01123233333344577999999999999864 599999999
Q ss_pred ceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccCh
Q 014332 112 AKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHP 191 (426)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~ 191 (426)
.+|+|++.+.++...+++|++|++++.++.+...+|...||.+..+.+.+.|+++|+||||+++++++|+++|.+|+.||
T Consensus 92 ~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p 171 (405)
T 4b4t_J 92 GKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHP 171 (405)
T ss_dssp CEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCH
T ss_pred CEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCC
Q 014332 192 EKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVD 271 (426)
Q Consensus 192 ~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD 271 (426)
++|.++|+.+|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||||
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSS
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 014332 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351 (426)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~ 351 (426)
+++++|..++.+++.+.++++.+||++|+++....+|+||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|
T Consensus 252 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp CCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred hhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHH
Confidence 99999988777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCC
Q 014332 352 TRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKF 416 (426)
Q Consensus 352 l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~ 416 (426)
++++++..++|+..+|..|+||||+||.++|++|++.|+++++..||++||..|+++++....+.
T Consensus 332 ~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 332 SRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp HTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred hcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999998766543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-70 Score=546.53 Aligned_cols=337 Identities=45% Similarity=0.789 Sum_probs=324.3
Q ss_pred hcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCccccccccc
Q 014332 82 EEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEE 161 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (426)
+..|+.||++.+++++ ++++|+.+++.+|+|.+.+.+++..++||++|++++.++.+...||...||.++.|.+++
T Consensus 100 ~~~p~~~g~~~~~~~~----~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~ 175 (437)
T 4b4t_I 100 RGNPLSIGTLEEIIDD----DHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDK 175 (437)
T ss_dssp HCSSEEEEEEEEECTT----SEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEES
T ss_pred cCCCceeEEEEEEecC----CEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeecc
Confidence 5789999999999987 469999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.|+++|+||||+++++++|++.|.+|+.+|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
|+|++++.++.+|..|+..+||||||||+|+++++|...+.+++.+..+++.++|++++++....+|+||+|||+|+.||
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 99999999999999999999999999999999999988777788899999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 401 (426)
||++||||||+.|+|++||.++|.+||+.|++++.+..++|++.||..|+||||+||.++|++|++.|+++++..||.+|
T Consensus 336 pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eD 415 (437)
T 4b4t_I 336 PALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415 (437)
T ss_dssp TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHH
T ss_pred HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcc
Q 014332 402 FLDAVNKVIKGYQKFSATPKY 422 (426)
Q Consensus 402 ~~~A~~~v~~~~~~~~~~~~~ 422 (426)
|..|++++.++.....-...|
T Consensus 416 f~~Al~rv~~~~~~e~le~lY 436 (437)
T 4b4t_I 416 FKQAKERVMKNKVEENLEGLY 436 (437)
T ss_dssp HHHHHHHHHHHHCCCSSSSCC
T ss_pred HHHHHHHHhCCCChhhHHhhc
Confidence 999999998877665544444
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-68 Score=538.64 Aligned_cols=377 Identities=43% Similarity=0.718 Sum_probs=335.6
Q ss_pred CChHhHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCC
Q 014332 18 LDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP 97 (426)
Q Consensus 18 l~~~~~~~lk~~~~~~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (426)
-.+.....+..|.+. ..+.+++|.+++.++.+++.|. ++. -....++..+ ++.|+.||++.+.+++
T Consensus 49 ~~~~~~~~~~~~~~~--l~~~~~~e~~~~~~~~~~~~l~--~~~---------~~~~~~~~~l-~~~~~~vg~~~~~~~~ 114 (437)
T 4b4t_L 49 EQEAHNKALNQFKRK--LLEHRRYDDQLKQRRQNIRDLE--KLY---------DKTENDIKAL-QSIGQLIGEVMKELSE 114 (437)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHH-HSCCEEEEEEEECSSS
T ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHh-ccCCceeeeheeeecC
Confidence 344445556655543 2345677888888888777765 322 1122334444 6789999999999876
Q ss_pred CCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHH
Q 014332 98 NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQI 177 (426)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~ 177 (426)
++++|+.+.+++|+|++.+.++...+++|++|++++.++.+...||..+||.+..|.+.+.|+++|+||||+++++
T Consensus 115 ----~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k 190 (437)
T 4b4t_L 115 ----EKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQI 190 (437)
T ss_dssp ----SCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHH
T ss_pred ----CcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHH
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHH
Q 014332 178 EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA 257 (426)
Q Consensus 178 ~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a 257 (426)
++|+++|.+|+.+|++|.++|+.+|+|+|||||||||||++|+|+|++++++|+.+++++++++|+|++++.++.+|..|
T Consensus 191 ~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 191 RELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA 270 (437)
T ss_dssp HHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~ 337 (426)
+..+||||||||+|+++++|.+++.+.+....+++.+||++|+++....+++||+|||+|+.||||++||||||+.|+|+
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~ 350 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC
T ss_pred HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecC
Confidence 99999999999999999999887777788899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 338 LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 338 ~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
+|+.++|.+||+.|++++....++|+..+|..|+||||+||.++|++|++.|+++++..|+.+||..|++++.+.
T Consensus 351 lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 351 LPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998899999999999999999999999999999999999999999999999998764
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-68 Score=537.24 Aligned_cols=339 Identities=45% Similarity=0.743 Sum_probs=318.4
Q ss_pred hhHHHhhhcCCceeeeeeeecCCCC----------------------CCCeEEEeecccceEEEecCCCCCCCCCCCCcE
Q 014332 75 SDKQMMQEEQPLQVARCTKIISPNS----------------------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMR 132 (426)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 132 (426)
.+.....+++|+.||++.++++.+. ..+.++|+.+++..|++.+...++...++||++
T Consensus 66 ~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (434)
T 4b4t_M 66 KEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDL 145 (434)
T ss_dssp HHHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEE
T ss_pred HHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCE
Confidence 3444555789999999999886531 124678899999999999999999999999999
Q ss_pred EeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCC
Q 014332 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPG 212 (426)
Q Consensus 133 v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppG 212 (426)
|+++..++.+...||.+.||.+..|.+++.|+++|+||||+++++++|++.|.+|+.+|++|.++|+++|+|+|||||||
T Consensus 146 v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPG 225 (434)
T 4b4t_M 146 VGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPG 225 (434)
T ss_dssp EEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTT
T ss_pred EeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHH
Q 014332 213 TGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (426)
Q Consensus 213 tGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (426)
||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+++++|.+...+++...++++
T Consensus 226 TGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~ 305 (434)
T 4b4t_M 226 TGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTM 305 (434)
T ss_dssp SSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777788899999
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCC
Q 014332 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (426)
Q Consensus 293 ~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g 372 (426)
.+||++++++....+|+||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|++++.+..+++++.||..|+|
T Consensus 306 ~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G 385 (434)
T 4b4t_M 306 LELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDE 385 (434)
T ss_dssp HHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSS
T ss_pred HHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhc
Q 014332 373 STGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 373 ~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~ 413 (426)
|||+||.++|++|++.|+++++..|+.+||..|++++.+..
T Consensus 386 ~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 386 FNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999886544
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-66 Score=523.62 Aligned_cols=371 Identities=40% Similarity=0.639 Sum_probs=334.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccccchhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 014332 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIA 112 (426)
Q Consensus 33 ~y~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (426)
.+..+++++|.++..+..+.+.+...... ...++....+..+..++.|+.||++.+.+++ ++++|+.+.+.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~-----~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~----~~~iv~~~~~~ 116 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRH-----LKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ----NTGIVSSTTGM 116 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTCSCEEEEEEEEEEET----TEEEEEETTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCceeeEEEEEccC----CeeEEecCCCC
Confidence 44556777777766666655544210000 0001323333334446799999999999976 46999999999
Q ss_pred eEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChh
Q 014332 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (426)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~ 192 (426)
+|++++.+.++...+++|.+|++++.++.+...||...||.+..|.+++.|+++|+||||+++++++|++.+.+|+.+|+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 014332 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (426)
Q Consensus 193 ~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~ 272 (426)
.|.++|+.+|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec-CCCHHHHHHHHHHH
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG-LPDLESRTQIFKIH 351 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~-~P~~~er~~Il~~~ 351 (426)
++++|.+...+++.+..+++.+||++++|+....+++||+|||+|+.|||+++||||||+.|+|| +|+.++|..||+.|
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 99999887777788899999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 352 TRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 352 l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
++++.+..+++++.+|..|+||||+||.++|++|++.|+++++..|+++||.+|+.++.+.
T Consensus 357 ~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~ 417 (428)
T 4b4t_K 357 ASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 417 (428)
T ss_dssp HHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCS
T ss_pred hcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCc
Confidence 9999998999999999999999999999999999999999999999999999999887543
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.9e-49 Score=426.93 Aligned_cols=264 Identities=40% Similarity=0.718 Sum_probs=202.5
Q ss_pred CCcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 151 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
.|+.......+.|+++|++|+|+++++++|++.+.+|+.+|+.|.++|+.+++|+|||||||||||++|+++|++++.+|
T Consensus 460 ~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 460 NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred CCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 34444555667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014332 231 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (426)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (426)
+.+++++++++|+|++++.++.+|..|+..+||||||||||+++++|+.+..+++....+.+.+||.+|+++....+|+|
T Consensus 540 ~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~v 619 (806)
T 3cf2_A 540 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp EECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEE
T ss_pred EEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999998655444455566888999999999999999999
Q ss_pred EEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 014332 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 311 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~ 390 (426)
|+|||+|+.||++++|||||++.|+|++|+.++|.+||+.+++++.+..+++++.||+.|+||||+||.++|++|++.|+
T Consensus 620 i~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~ 699 (806)
T 3cf2_A 620 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp ECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHH
T ss_pred EEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHc-------------------------CCCccHHHHHHHHHHHHhhcc
Q 014332 391 RAR-------------------------RKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 391 ~~~-------------------------~~~It~ed~~~A~~~v~~~~~ 414 (426)
++. ...|+.+||.+|++++.++..
T Consensus 700 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 700 RESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 863 125999999999999877653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.1e-46 Score=401.08 Aligned_cols=251 Identities=41% Similarity=0.727 Sum_probs=232.5
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
...|.++|+||+|+++++++|++++.+|+.+|++|.++|+.+|+|||||||||||||+||+++|++++++|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014332 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ 319 (426)
++|.|++++.++.+|+.|+.++||||||||||.++++|.+.+. ....+.+.+|+..|+++....+|+||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~---~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC---TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC---hHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999998865432 2335667788888999888889999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc------
Q 014332 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR------ 393 (426)
Q Consensus 320 ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~------ 393 (426)
||++++|||||++.|+++.|+.++|.+||+.|++.+.+..++++..+|..|+||+|+||.++|++|++.|+++.
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999998899999999999999999999999999999998764
Q ss_pred -----------CCCccHHHHHHHHHHHHhhc
Q 014332 394 -----------RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 394 -----------~~~It~ed~~~A~~~v~~~~ 413 (426)
...|+.+||..|+..+.+..
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred cccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 13488899999998776544
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=6.4e-42 Score=334.28 Aligned_cols=254 Identities=41% Similarity=0.738 Sum_probs=225.7
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
.+.+.|+++|++|+|++++++.|++++.+|+.+|+.|..+|+.+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 5 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~ 84 (301)
T 3cf0_A 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 84 (301)
T ss_dssp CCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+.+++.|+....++.+|..+....|+||||||+|.+...+............+.+.+++..++++....+++||+|||++
T Consensus 85 l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 85 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999987664322111112234455677777777777889999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc----
Q 014332 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR---- 393 (426)
Q Consensus 318 ~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~---- 393 (426)
+.+|++++|+|||+..+.++.|+.++|.+||+.+++..++..++++..++..+.||+|+||+++|++|.+.|.++.
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~ 244 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 244 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998888788999999999999999999999999999887653
Q ss_pred ---------------------CCCccHHHHHHHHHHHHh
Q 014332 394 ---------------------RKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 394 ---------------------~~~It~ed~~~A~~~v~~ 411 (426)
...|+.+||..|++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 283 (301)
T 3cf0_A 245 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 283 (301)
T ss_dssp C--------------------CCCBCHHHHHHHHTTCCC
T ss_pred hhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 136999999999987654
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=328.11 Aligned_cols=251 Identities=40% Similarity=0.672 Sum_probs=212.5
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
+.|+++|+||+|+++++++|++.+.+|+.+++.|..+++..++|++|+||||||||+|++++|..++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.+.|+.++.++.+|+.++...|+++|+||+|.++..+..... ....+.+.+++.+|++......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 999999999999999998899999999999999876543211 12234567888899998888889999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHHhc---CCCCCCccHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHc--
Q 014332 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT---MNCERDIRFELLARLC--PNSTGADIRSVCTEAGMFAIRAR-- 393 (426)
Q Consensus 321 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~---~~~~~~v~l~~la~~t--~g~sg~di~~l~~~A~~~A~~~~-- 393 (426)
|++++|||||++.|++++|+.++|.+||+.+++. .....++++..+|..+ +||||+||.++|++|++.|+++.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854 3455689999999875 59999999999999999998752
Q ss_pred ---------CCCccHHHHHHHHHHHHhhcc
Q 014332 394 ---------RKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 394 ---------~~~It~ed~~~A~~~v~~~~~ 414 (426)
...|+.+||..|++++.++..
T Consensus 240 ~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp ----------CCBCHHHHHHHHTTCCCCC-
T ss_pred hccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 346999999999998766543
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.8e-41 Score=322.14 Aligned_cols=261 Identities=54% Similarity=0.947 Sum_probs=245.5
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
.+.+...|+.+|++|+|++++++.|.+++..++.+++.|..+|+.++.++||+||||||||++|+++|++++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
+++...+.|.....++.+|..+....|+||||||+|.++.++.+...+++...+..+..+++.++++....+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988876666667889999999999999888888999999999
Q ss_pred CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 014332 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK 395 (426)
Q Consensus 316 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~ 395 (426)
.++.++++++|++||+..+.++.|+.++|.+|++.+++......++++..++..+.|+++++|+.+|++|...|.++++.
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~ 244 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhccCC
Q 014332 396 TVTEKDFLDAVNKVIKGYQKF 416 (426)
Q Consensus 396 ~It~ed~~~A~~~v~~~~~~~ 416 (426)
.|+.+||.+|++++.......
T Consensus 245 ~I~~~d~~~al~~~~~~~~~~ 265 (285)
T 3h4m_A 245 YVTMDDFRKAVEKIMEKKKVK 265 (285)
T ss_dssp SBCHHHHHHHHHHHHHHHCCC
T ss_pred cCCHHHHHHHHHHHHhccccc
Confidence 999999999999998765444
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.2e-40 Score=342.64 Aligned_cols=253 Identities=45% Similarity=0.797 Sum_probs=227.6
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.+.++|+||+|++++++++++++.. +.++..|..+|...|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999999976 788999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
+.|.+...++.+|..|+...||||||||+|.++.++.....+++.+..+++.+++..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999988765444556677788899999999887778999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKD 401 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed 401 (426)
++++|||||++.+.++.|+.++|.+|++.+++...+..++++..++..++||+|+||.++|++|+..|.+++...|+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHhhccC
Q 014332 402 FLDAVNKVIKGYQK 415 (426)
Q Consensus 402 ~~~A~~~v~~~~~~ 415 (426)
|..|+.++..+..+
T Consensus 249 l~~al~~v~~~~~~ 262 (476)
T 2ce7_A 249 FEEAIDRVIAGPAR 262 (476)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHhcCccc
Confidence 99999998765433
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.9e-40 Score=312.51 Aligned_cols=256 Identities=44% Similarity=0.766 Sum_probs=229.7
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
++.++.++.+|++|+|++++++++.+.+.. +.+++.|..+|...+++++|+||||||||++|+++|+.++.+++.++++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 356678899999999999999999999876 7889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
++...+.|.+...++.+|+.+....|+++||||+|.+...+.....++.....+.+.+++..++++....+++||++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 99999999999999999999999999999999999998877544334455666778889999998877888999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 014332 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKT 396 (426)
Q Consensus 317 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~ 396 (426)
++.++++++|+|||++.+.++.|+.++|.+|++.+++...+..++++..++..++||+++||.++|++|...|.+++...
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~ 239 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999998888888889999999999999999999999999999999899
Q ss_pred ccHHHHHHHHHHHHhhc
Q 014332 397 VTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 397 It~ed~~~A~~~v~~~~ 413 (426)
|+.+||..|++++..++
T Consensus 240 i~~~~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 240 VSMVEFEKAKDKIMMGL 256 (257)
T ss_dssp BCHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHhcCC
Confidence 99999999999986543
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-40 Score=322.55 Aligned_cols=228 Identities=36% Similarity=0.634 Sum_probs=207.6
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-CCcEEEEecch
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSE 237 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-~~~~i~v~~~~ 237 (426)
+.+.|+++|+||+|++++++.|++.+.+|+.+|++|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35678999999999999999999999999999999985 46788999999999999999999999999 89999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCC
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNR 316 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn~ 316 (426)
+.+++.|++++.++.+|..++...|+||||||+|.+++++.... .....+.+.+++..++++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999999999999999999999988775432 3445667778889998875 4678999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 014332 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 317 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~ 392 (426)
++.+|++++| ||+..+.++.|+.++|.+||+.+++..... .+.++..|++.+.||+|+||.++|++|++.|+++
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887654 5678999999999999999999999999999876
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-39 Score=320.99 Aligned_cols=251 Identities=37% Similarity=0.614 Sum_probs=219.3
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
.++.++|+++|++|+|++.+++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4567899999999999999999999999999999999987 567889999999999999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEEeC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATN 315 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn 315 (426)
++.+++.|+.+..++.+|..++...|+||||||+|.+.+++......... +...+++..++++. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTH---HHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHH---HHHHHHHHHhccccccCCceEEEEecC
Confidence 99999999999999999999999999999999999998877544333333 34455666666653 567899999999
Q ss_pred CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcC
Q 014332 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR 394 (426)
Q Consensus 316 ~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~ 394 (426)
+++.||++++| ||+..+.++.|+.++|.+||+.++...... .+.++..++..+.||+|+||.++|++|.+.|+++..
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999887654 567889999999999999999999999999988641
Q ss_pred -------------------------------------------CCccHHHHHHHHHHHHhhc
Q 014332 395 -------------------------------------------KTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 395 -------------------------------------------~~It~ed~~~A~~~v~~~~ 413 (426)
..||.+||..|++.+.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 241 SATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp HCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 3499999999999876544
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.3e-38 Score=318.00 Aligned_cols=254 Identities=36% Similarity=0.596 Sum_probs=210.5
Q ss_pred ccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.........|+++|++|+|++.+++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.+
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3345566788999999999999999999999999999999987 668889999999999999999999999999999999
Q ss_pred ecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEE
Q 014332 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLM 312 (426)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~ 312 (426)
+++++.+.+.|+.+..++.+|..++...|+||||||+|.+.+.+.... .....+...+++..++++.. ..+++||+
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 999999999999999999999999999999999999999988764432 23344555667777776643 56899999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 313 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
+||+++.++++++| ||+..+.+++|+.++|.+||+.++...+.. .+.++..|+..+.||+|+||.++|++|.+.|++
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999887653 567889999999999999999999999999998
Q ss_pred Hc-------------------------------------------CCCccHHHHHHHHHHHHhhc
Q 014332 392 AR-------------------------------------------RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 392 ~~-------------------------------------------~~~It~ed~~~A~~~v~~~~ 413 (426)
+. ...|+.+||..|+.++.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 271 KIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp HHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred HHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 62 13499999999999876543
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-38 Score=326.87 Aligned_cols=253 Identities=43% Similarity=0.748 Sum_probs=233.0
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
++++|+||+|+++++.++++++.. +.++..|..+++..|+|+||+||||||||+||+++|++++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999999876 7788999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCc
Q 014332 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 322 (426)
Q Consensus 243 ~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~ 322 (426)
.|.....++.+|+.+....|+++||||||.++..+.....++..+..+.+.+++..++++.....+++|++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999998776543333466777889999999999888888999999999999999
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 014332 323 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 402 (426)
Q Consensus 323 al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 402 (426)
+++|+|||++.+.++.|+.++|.+||+.+++...+..++++..++..++||+|+||.++|++|+..|.+++...|+.+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999988888888999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhhccCC
Q 014332 403 LDAVNKVIKGYQKF 416 (426)
Q Consensus 403 ~~A~~~v~~~~~~~ 416 (426)
..|+.++..+..+.
T Consensus 265 ~~al~~v~~~~~~~ 278 (499)
T 2dhr_A 265 EEAADRVMMLPAKK 278 (499)
T ss_dssp HHHHHHHTTCSSSS
T ss_pred HHHHHHHhcccccc
Confidence 99999998776543
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=301.07 Aligned_cols=254 Identities=40% Similarity=0.664 Sum_probs=204.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~ 242 (426)
|+++|++|+|++.+++.|++++.. +.+++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999999876 8889999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCC-CCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 243 ~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~-~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
.+.+...++.+|..+....|+||||||+|.++.++..... ..+...+..+..++..++++....+++||++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 9999999999999999999999999999999876643221 123455677888999888887778999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI--RFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTE 399 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v--~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ 399 (426)
++++|+|||+..+.++.|+.++|.+|++.++...+...+. .+..++..+.|+++++|.++|++|+..|.+++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 9999999999999999999999999999999888766443 34789999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHhhccCCC
Q 014332 400 KDFLDAVNKVIKGYQKFS 417 (426)
Q Consensus 400 ed~~~A~~~v~~~~~~~~ 417 (426)
+||..|+.++..+..+..
T Consensus 240 ~d~~~a~~~~~~~~~~~~ 257 (262)
T 2qz4_A 240 LNFEYAVERVLAGTAKKS 257 (262)
T ss_dssp CCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhccChhhhh
Confidence 999999999987765543
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.2e-37 Score=322.40 Aligned_cols=249 Identities=41% Similarity=0.734 Sum_probs=226.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.++++|++|+|++.++++|++++..++.+|+.|..+|..++.++|||||||||||++|+++|++++.+|+.++|+++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
+.|+....++.+|..|....|++|||||||.+++++.... .....+.+..|+..+++.....+++||+|||+++.|+
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999998774432 2333444555666666666778899999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCC------
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRK------ 395 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~------ 395 (426)
++++++|||+..+.++.|+.++|.+||+.+++.+.+..++++..++..+.||+++||.++|++|++.|+++...
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999988888889999999999999999999999999999987643
Q ss_pred -----------CccHHHHHHHHHHHHhhc
Q 014332 396 -----------TVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 396 -----------~It~ed~~~A~~~v~~~~ 413 (426)
.||.+||..|++++.+..
T Consensus 435 ~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred cccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 489999999999887654
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=2.1e-36 Score=287.42 Aligned_cols=247 Identities=44% Similarity=0.770 Sum_probs=218.9
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
..+.|..+|++++|+++++.++++++.. +.++..+..+++..++|++|+||||||||+|++++|+.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999998875 677889999999999999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
...+.+.....++.+|+.+....|+++|+||+|.++..+.....+...+..+.+.+++..+++......++++++||+|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888888999999998888999999999999876643222335566777889999999887777889999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 014332 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398 (426)
Q Consensus 319 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It 398 (426)
.+|++++|++||++.+.++.|+.++|.+||+.+++...+..++++..++..++|++|+||.++|++|...|.+++...||
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~ 245 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999999999999998888778889999999999999999999999999999988888999
Q ss_pred HHHHHHHH
Q 014332 399 EKDFLDAV 406 (426)
Q Consensus 399 ~ed~~~A~ 406 (426)
.+||.+|+
T Consensus 246 ~~dl~~a~ 253 (254)
T 1ixz_A 246 MKDLEEAA 253 (254)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.6e-37 Score=317.34 Aligned_cols=232 Identities=35% Similarity=0.618 Sum_probs=197.8
Q ss_pred cccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-CCcEEEE
Q 014332 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRV 233 (426)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-~~~~i~v 233 (426)
......+.|+++|++|+|++.+++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 344566789999999999999999999999999999999875 45678999999999999999999999999 8999999
Q ss_pred ecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEE
Q 014332 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLM 312 (426)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~ 312 (426)
+++++.+.+.|+.+..++.+|..++...|+||||||||.+++.+.... .....+.+.+++..++++. ...+++||+
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 999999999999999999999999999999999999999988775432 3334566678888888875 367899999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 014332 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIR 391 (426)
Q Consensus 313 atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~ 391 (426)
|||+++.++++++| ||+..+.+++|+.++|..||+.++...+.. .+.++..|+..+.||+|+||.++|++|.+.|++
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999877653 567899999999999999999999999999987
Q ss_pred H
Q 014332 392 A 392 (426)
Q Consensus 392 ~ 392 (426)
+
T Consensus 355 ~ 355 (444)
T 2zan_A 355 K 355 (444)
T ss_dssp H
T ss_pred H
Confidence 6
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=6.6e-35 Score=281.14 Aligned_cols=247 Identities=44% Similarity=0.770 Sum_probs=219.1
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
+...|+++|++++|++++++++++++.. +.++..+..+++..++|++|+||||||||+|++++++.++.+++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3445889999999999999999998875 677888999999999999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
...+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+.+++.++++......++++++||+|+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 88888888888999999998888999999999998766543222234566788889999999887777789999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 014332 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398 (426)
Q Consensus 319 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It 398 (426)
.+|++++|++||++.+.++.|+.++|.+||+.+++...+..++++..++..++|++++||.++|++|...|.+++...||
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~ 269 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBC
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999998887778889999999999999999999999999999988888999
Q ss_pred HHHHHHHH
Q 014332 399 EKDFLDAV 406 (426)
Q Consensus 399 ~ed~~~A~ 406 (426)
.+||.+|+
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999885
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-35 Score=287.08 Aligned_cols=251 Identities=34% Similarity=0.571 Sum_probs=210.1
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
.++.+.++.+|++|+|++.+++.|++++..++.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 456677899999999999999999999999999999998765 5688999999999999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
++...+.|.+...++.+|..+....|+||||||+|.+...+...........+..++..++.........+++||++||+
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 99999999999999999999999999999999999998876543333334444444444443322222357999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc--
Q 014332 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR-- 393 (426)
Q Consensus 317 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~-- 393 (426)
++.+++++++ ||+..+.++.|+.++|..|++.++...+.. .+.++..++..+.|+++++|..+|++|+..|+++.
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999876543 34567889999999999999999999999998875
Q ss_pred ----------CCCccHHHHHHHHHHHH
Q 014332 394 ----------RKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 394 ----------~~~It~ed~~~A~~~v~ 410 (426)
...|+.+||..|+.++.
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCC
T ss_pred hhcccccccccCCcCHHHHHHHHHHcC
Confidence 25799999999987654
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=3e-38 Score=302.22 Aligned_cols=257 Identities=40% Similarity=0.725 Sum_probs=217.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
+.|+.+|++|+|++++++.+++++.. +.+++.|..++...++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 56788999999999999999999875 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCC-CCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPD 318 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l~~~~~-~~~v~vI~atn~~~ 318 (426)
.+.|.+...++.+|..+....|+||||||+|.+...+..++ ...+....+.+.+++..++++.. ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888877788899999988999999999999987653221 11112222345567777776543 34589999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCcc
Q 014332 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVT 398 (426)
Q Consensus 319 ~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It 398 (426)
.++++++|+|||+..+.++.|+.++|.++|+.+++.+....++++..++..+.|++|+||.++|++|...|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999999887777788899999999999999999999999999877788999
Q ss_pred HHHHHHHHHHHHhhccCCCC
Q 014332 399 EKDFLDAVNKVIKGYQKFSA 418 (426)
Q Consensus 399 ~ed~~~A~~~v~~~~~~~~~ 418 (426)
.+||..|+.++......+..
T Consensus 243 ~~~~~~a~~~~~~~~~~~~~ 262 (268)
T 2r62_A 243 QQHLKEAVERGIAGLEKKLE 262 (268)
T ss_dssp HHHHHTSCTTCCCCCC----
T ss_pred HHHHHHHHHHHhhcchhhhh
Confidence 99999999887766655544
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=290.01 Aligned_cols=251 Identities=34% Similarity=0.591 Sum_probs=216.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
......++.+|++|+|++.+++.|++++.+|+.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 345678899999999999999999999999999999988765 6789999999999999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEEe
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMAT 314 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~v~vI~at 314 (426)
++...+.|+....++.+|..+....|+||||||+|.+...+.... .....+.+.+++..+++.. ...+++||+||
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~at 228 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEec
Confidence 999999999999999999999999999999999999987664322 3344556667777777654 34689999999
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc
Q 014332 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 393 (426)
Q Consensus 315 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~ 393 (426)
|+++.++++++| ||+..+.++.|+.++|.+|++.++...+.. .+.++..++..+.||++++|..+|++|...++++.
T Consensus 229 n~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 229 NRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp SCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred CChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999876543 34578899999999999999999999999998853
Q ss_pred ------------CCCccHHHHHHHHHHHHhhc
Q 014332 394 ------------RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 394 ------------~~~It~ed~~~A~~~v~~~~ 413 (426)
...|+.+||..|+.++.+..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 307 QTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp CC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred hhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 35799999999999987654
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=9.5e-38 Score=341.44 Aligned_cols=237 Identities=43% Similarity=0.774 Sum_probs=211.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
....+.+.++|++++|++++++.|.+++.+++.+++.|..+++.++.++||+||||||||++|+++|+.++.+|+.++++
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
++.++|+|+.+..++.+|+.++...||||||||||.++..|.......+....+.+.+|+..++++....+++||+|||+
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBS
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCC
Confidence 99999999999999999999999999999999999999887544332334567778899999999888889999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHc
Q 014332 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRAR 393 (426)
Q Consensus 317 ~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~ 393 (426)
++.||++++|||||+..|.|+.|+.++|..||+.+++...+..++++..++..+.|||+++|.++|++|.+.|+++.
T Consensus 626 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp CGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred cccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888899999999999999999999999999998764
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=7e-34 Score=286.96 Aligned_cols=254 Identities=32% Similarity=0.568 Sum_probs=205.8
Q ss_pred CcccccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 152 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
..+...++...++++|++|+|++.+++.|.+++..++.+++.|...+ .+++++|||||||||||++|+++|++++.+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 99 NLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp TTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 34455677788999999999999999999999999999999998876 56889999999999999999999999999999
Q ss_pred EEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeE
Q 014332 232 RVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--RGNIK 309 (426)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~--~~~v~ 309 (426)
.++++++...+.|+....++.+|..+....|+||||||||.++..+........ .+.+..++..++++.. ..+++
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDAS---RRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTH---HHHHHHHHHHHHHHC-----CEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHH---HHHHHHHHHHhhcccccCCCCEE
Confidence 999999999999999999999999999999999999999999877644332222 3344455555554433 46799
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF 388 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~ 388 (426)
||+|||+++.++++++| ||+..+.++.|+.++|.+||+.++...+.. .+.++..++..+.|+++++|..+|+.|...
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~ 332 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALG 332 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999998776543 345678999999999999999999999999
Q ss_pred HHHH------------cCCCccHHHHHHHHHHHHh
Q 014332 389 AIRA------------RRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 389 A~~~------------~~~~It~ed~~~A~~~v~~ 411 (426)
++++ ....|+.+||..++..+.+
T Consensus 333 ~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 333 PIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 9887 2357999999999986543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=6.9e-31 Score=287.26 Aligned_cols=247 Identities=41% Similarity=0.740 Sum_probs=222.7
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
..++++|++|+|+++++++|++++.+|+.+|++|..+++.++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
.+.|+....++.+|+.+....|+++||||+|.++.++.... .....+.+.+++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC---SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc---chHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999988764322 333445566777778888788899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcC------
Q 014332 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARR------ 394 (426)
Q Consensus 321 d~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~------ 394 (426)
++++++++||+..+.++.|+.++|.+||+.++..+.+..+.++..++..+.||+++++..+|.+|.+.++++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999998888888999999999999999999999999998887643
Q ss_pred -----------CCccHHHHHHHHHHHH
Q 014332 395 -----------KTVTEKDFLDAVNKVI 410 (426)
Q Consensus 395 -----------~~It~ed~~~A~~~v~ 410 (426)
..++.+|+..++....
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSC
T ss_pred hhccchhhhhhhhhhhhhhhccccccC
Confidence 2467778888876654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=5.8e-28 Score=234.66 Aligned_cols=177 Identities=23% Similarity=0.323 Sum_probs=136.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHH----HcCCCEEEEEeCCCcc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAI 273 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~~~~p~Il~iDEiD~l 273 (426)
+.++|+++|||||||||||++|+++|++++.+|+.++++++.+.++|+++..++.+|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 667899999999999999999999999999999999999999999999999999999998 5778999999999999
Q ss_pred cCCccCCCC--CCChHHHHHHHHHHHHhc--------CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHH
Q 014332 274 GGARFDDGV--GGDNEVQRTMLEIVNQLD--------GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLES 343 (426)
Q Consensus 274 ~~~r~~~~~--~~~~~~~~~l~~ll~~l~--------~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~e 343 (426)
++.+.+... .....++..|+++++... ......+++||+|||+++.+|++++|+|||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 885532211 123355666777665221 22345689999999999999999999999998887 479999
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHH
Q 014332 344 RTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRS 380 (426)
Q Consensus 344 r~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~ 380 (426)
|.+|++.++.. .+++++.++..+.||++++|..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999988764 3567888999999999988763
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=9.1e-28 Score=247.18 Aligned_cols=205 Identities=23% Similarity=0.261 Sum_probs=143.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhh
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV 239 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~ 239 (426)
.|...|++++|++++++.+..++.. -..|..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 4566789999999999999888764 233667889999999999999999999999998 999999999999
Q ss_pred hhhhcchHHHHHHHHHHH---HcCCCEEEEEeCCCcccCCccCCCCCCChHHHH-H---------------HHHHHHHhc
Q 014332 240 QKYVGEGARMVRELFQMA---RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-T---------------MLEIVNQLD 300 (426)
Q Consensus 240 ~~~~g~~~~~v~~lf~~a---~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~-~---------------l~~ll~~l~ 300 (426)
++++|+++. ++.+|..| +...||||||||+|.++++|.....++.....+ . ...+++.++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 89999999 788999999999999998886543222111111 1 112444443
Q ss_pred --CCCCCCCeEEEEEeCCCCCCCccccCCCCcce--EEEecCC--CHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCc
Q 014332 301 --GFDARGNIKVLMATNRPDTLDPALLRPGRLDR--KVEFGLP--DLESRTQIFKIHTRTMNCERDIRFELLARLCPNST 374 (426)
Q Consensus 301 --~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~--~i~~~~P--~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~s 374 (426)
++.....++|++|||+++.+|++++|+|||++ .+.+|.| +.++|.+|++.++. .+++.++..+.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 33333345556889999999999999999998 5666777 45778887765543 267888999999
Q ss_pred HHHHHHHHHH
Q 014332 375 GADIRSVCTE 384 (426)
Q Consensus 375 g~di~~l~~~ 384 (426)
|+|+.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999964
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=1.1e-23 Score=204.81 Aligned_cols=224 Identities=20% Similarity=0.243 Sum_probs=172.4
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCC---CcceEecCCCChHHHHHHHHHHhc-------CCcEEEEecchh
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPP---KGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSEL 238 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~---~~vLL~GppGtGKT~laralA~~l-------~~~~i~v~~~~l 238 (426)
+|+|++++++.|.+++..+. .+..+..+|+.++ .++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999998744 4777777776543 469999999999999999999987 348999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
...+.|.....+..+|..+ .++||||||+|.++..+.+ ...+...+..|+.+++. ...++++|++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~-----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH-----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc-----CCCCEEEEEeCChHH
Confidence 9999999988888999887 3569999999999865432 22356677777777764 346788999998653
Q ss_pred -----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHh-------CCCCcHHHHHHHHHHH
Q 014332 319 -----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL-------CPNSTGADIRSVCTEA 385 (426)
Q Consensus 319 -----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~-------t~g~sg~di~~l~~~A 385 (426)
.++|+|++ ||+..+.|+.|+.+++..|++.++...+.. .+-.+..++.. ....+++++.++|+.|
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 35799999 999999999999999999999999876544 22233445554 2234689999999999
Q ss_pred HHHHHHH----cCCCccHHHHHHH
Q 014332 386 GMFAIRA----RRKTVTEKDFLDA 405 (426)
Q Consensus 386 ~~~A~~~----~~~~It~ed~~~A 405 (426)
...+..+ ....++.+++...
T Consensus 259 ~~~~~~r~~~~~~~~~~~~~l~~i 282 (309)
T 3syl_A 259 RLRQANRLFTASSGPLDARALSTI 282 (309)
T ss_dssp HHHHHHHHHHC---CEEHHHHHEE
T ss_pred HHHHHHHHHhccCCCCCHHHHhhc
Confidence 8766554 3356777766543
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.91 E-value=1.1e-22 Score=200.47 Aligned_cols=224 Identities=14% Similarity=0.128 Sum_probs=173.5
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
..+.+++.+.+|++++|.+.+++.+..++.... ....++.++||+||||||||++|+++|+.++.+|+.+++
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~--------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAK--------KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHH--------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHH--------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 345667788899999999999999999987521 123467789999999999999999999999999999998
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-------------
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------- 302 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------------- 302 (426)
+.+. ....+...+.. ...+++|||||||.+ ....+..++.+++.....
T Consensus 89 ~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp GGCC------SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCC
T ss_pred hhcc------chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCcccccee
Confidence 7653 22223333332 345679999999998 577888888887754210
Q ss_pred CCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHH
Q 014332 303 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSV 381 (426)
Q Consensus 303 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l 381 (426)
....++.+|++||+...+++++++ ||+..+.|+.|+.+++..+++.++...+.. .+..+..++..+.| +.+++.++
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~ 226 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRL 226 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHH
T ss_pred cCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHH
Confidence 011258999999999999999999 999999999999999999999998876644 23345677887766 56799999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 382 CTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 382 ~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+..+...|...+...|+.+++..++...
T Consensus 227 l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 227 LKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 9999888887778889999999888763
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=5e-23 Score=205.07 Aligned_cols=220 Identities=20% Similarity=0.249 Sum_probs=163.7
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhhh
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ 240 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~~ 240 (426)
|..+|++++|.+.+++.+..+... -..+..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 445699999999999887665543 1224556789999999999999999999999875 888888876444
Q ss_pred hhhcc-------------------------------------------------hHHHHHHHHHHHHc-----C----CC
Q 014332 241 KYVGE-------------------------------------------------GARMVRELFQMARS-----K----KA 262 (426)
Q Consensus 241 ~~~g~-------------------------------------------------~~~~v~~lf~~a~~-----~----~p 262 (426)
.+.+. ....++..|..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 12334444444322 1 26
Q ss_pred EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe-----------CCCCCCCccccCCCCcc
Q 014332 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT-----------NRPDTLDPALLRPGRLD 331 (426)
Q Consensus 263 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at-----------n~~~~ld~al~r~gRf~ 331 (426)
+||||||+|.+ +.+.+..++.+++. ....++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 79999999998 56666666655532 23344444443 247889999999 996
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 332 RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 332 ~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
. +.|++|+.+++..|++.++...+.. .+-.++.++..+.+.+++++.++|+.|...|..++...||.+|+.+|+..+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5 8999999999999999988765543 233467788888745889999999999999999999999999999999763
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.89 E-value=7.7e-22 Score=192.94 Aligned_cols=220 Identities=19% Similarity=0.233 Sum_probs=170.0
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
.....+.+|++++|.+..++.+..++... .. +..++.++||+||||||||++|+++++.++.+++.++++.+
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAA-------KA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHH-------HH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHH-------Hc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 34567779999999999999999988642 11 12356789999999999999999999999999999998766
Q ss_pred hhhhhcchHHHHHHHHHHHHc--CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC-----CC--------
Q 014332 239 VQKYVGEGARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-----FD-------- 303 (426)
Q Consensus 239 ~~~~~g~~~~~v~~lf~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~-----~~-------- 303 (426)
.. .. .++..... ..+++|||||+|.+ ....+..++.+++.... ..
T Consensus 75 ~~------~~---~l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 75 EK------PG---DLAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp CS------HH---HHHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred CC------hH---HHHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 32 11 22322222 45679999999998 56778888888876420 00
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHH
Q 014332 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 382 (426)
Q Consensus 304 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~ 382 (426)
...++.+|++||.+..+++++++ ||+..+.++.|+.+++..+++.++...+.. .+..+..++..+.| +++++.+++
T Consensus 135 ~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l 211 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLF 211 (324)
T ss_dssp ECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHH
T ss_pred CCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 11368899999999999999998 998899999999999999999998766543 22346778888877 567999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 383 TEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 383 ~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
+.+...|...+...|+.+++..++...
T Consensus 212 ~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 212 RRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 998877766667789999998887654
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.86 E-value=2.6e-20 Score=170.33 Aligned_cols=207 Identities=20% Similarity=0.219 Sum_probs=156.6
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEE
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 231 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i 231 (426)
.+.+.+++.+|++++|.+..++.+.+++.. ..+.+++|+||||||||++|+++++.+ ...++
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 466778889999999999999999999865 123459999999999999999999975 45678
Q ss_pred EEecchhhhhhhcchHHHHHHHHHHHH------cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014332 232 RVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (426)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~lf~~a~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (426)
.++++.... ...+...+.... ...+.+|||||+|.+ ....+..+..+++.. .
T Consensus 73 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~ 130 (226)
T 2chg_A 73 EMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----S 130 (226)
T ss_dssp EEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----T
T ss_pred EeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----C
Confidence 887765432 122222222221 256789999999998 456667777777652 4
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHH
Q 014332 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTE 384 (426)
Q Consensus 306 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~ 384 (426)
.++.+|++||.+..+++++.+ |+. .+.+++|+.++..++++.++...+.. .+-.+..++..+.| +.+.+.++++.
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 578899999999999999998 886 89999999999999999888755443 22345677777766 55677777776
Q ss_pred HHHHHHHHcCCCccHHHHHHHHH
Q 014332 385 AGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 385 A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
+...+ ..||.+|+.+++.
T Consensus 207 ~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC-----SCBCHHHHHHHHH
T ss_pred HHhcC-----ceecHHHHHHHhc
Confidence 65543 6899999999875
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=4.4e-21 Score=185.88 Aligned_cols=236 Identities=24% Similarity=0.284 Sum_probs=159.4
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhh-CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhcch
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG 246 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g~~ 246 (426)
+|+|++.+++.+..++..++.++.+...+ +...+.++||+||||||||++|+++|+.++.+++.++++.+.. .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 49999999999999886532222211111 1135789999999999999999999999999999999998876 555543
Q ss_pred -HHHHHHHHHHH-----HcCCCEEEEEeCCCcccCCccCCCCCCCh---HHHHHHHHHHHHhc-----CCCCCCCeEEEE
Q 014332 247 -ARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLD-----GFDARGNIKVLM 312 (426)
Q Consensus 247 -~~~v~~lf~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~-----~~~~~~~v~vI~ 312 (426)
...++.++..+ ....++||||||+|.+....... +.+. .++..++.+++... +.....++++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 34566666532 11235799999999997654221 1111 12455555555311 001345788888
Q ss_pred Ee----CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHH-----------hcCCCC---CCccHHHHHHhC----
Q 014332 313 AT----NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-----------RTMNCE---RDIRFELLARLC---- 370 (426)
Q Consensus 313 at----n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l-----------~~~~~~---~~v~l~~la~~t---- 370 (426)
++ +.+..+++++++ ||+..+.|++|+.+++.+|++... ...+.. .+-.++.++..+
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 84 567889999998 999899999999999999998311 112211 122345566654
Q ss_pred ---CCCcHHHHHHHHHHHHHHHHHHcC------CCccHHHHHHHHHH
Q 014332 371 ---PNSTGADIRSVCTEAGMFAIRARR------KTVTEKDFLDAVNK 408 (426)
Q Consensus 371 ---~g~sg~di~~l~~~A~~~A~~~~~------~~It~ed~~~A~~~ 408 (426)
.+.+.+++.++|+.+...+..... ..|+.+++.+++..
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 245778999999987754432221 14999999988764
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.85 E-value=5.3e-20 Score=183.29 Aligned_cols=224 Identities=20% Similarity=0.208 Sum_probs=165.9
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEec
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIG 235 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~ 235 (426)
..+++++|.++.++.+..++...+. ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3447899999999999998854211 2457799999999999999999999988 888999998
Q ss_pred chhhhhh----------------hcc-hHHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 236 SELVQKY----------------VGE-GARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 236 ~~l~~~~----------------~g~-~~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
....+.+ .|. ....+..++..... ..|++|||||+|.+...+ ..+..+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 7543211 111 22334455555443 448899999999984311 14677778887
Q ss_pred HhcCCCCCCCeEEEEEeCCC---CCCCccccCCCCcce-EEEecCCCHHHHHHHHHHHHhc----CCCCCCccHHHHHHh
Q 014332 298 QLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLARL 369 (426)
Q Consensus 298 ~l~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~----~~~~~~v~l~~la~~ 369 (426)
.+.......++.+|++||.+ ..+++.+++ ||.. .+.|++|+.+++.+|++.++.. ..+. +-.++.++..
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHH
Confidence 76544325678999999987 778899998 8875 8999999999999999988764 1222 2345667777
Q ss_pred CC---CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 370 CP---NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 370 t~---g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
+. | +++.+.++|+.|...|...+...|+.+++..|+..+.
T Consensus 235 ~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 235 AAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 65 6 5678889999999988887888999999999998764
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=4.1e-22 Score=209.11 Aligned_cols=228 Identities=21% Similarity=0.308 Sum_probs=148.9
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh----
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ---- 240 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~---- 240 (426)
.-..+++|++++++.+.+.+....... .. ++.+++|+||||||||++|+++|..++.+++.+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345679999999999988775421111 11 5668999999999999999999999999999998876543
Q ss_pred -----hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc--CCC--------CC
Q 014332 241 -----KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD--------AR 305 (426)
Q Consensus 241 -----~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~--~~~--------~~ 305 (426)
.|+|.....+...|..+....| |+||||||.+...+. ...+..++++++... .+. ..
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 5667666777778887766666 999999999965431 123444444443211 111 11
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh-----cCCCCC---Ccc---HHHHHHhCCC-C
Q 014332 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-----TMNCER---DIR---FELLARLCPN-S 373 (426)
Q Consensus 306 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~-----~~~~~~---~v~---l~~la~~t~g-~ 373 (426)
.++++|+|||+++.++++|++ ||. .|.|+.|+.+++..|++.++. ..++.. .++ +..++....+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 995 799999999999999998862 223221 122 3444443322 3
Q ss_pred cHHHH----HHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHH
Q 014332 374 TGADI----RSVCTEAGMFAIRA--RRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 374 sg~di----~~l~~~A~~~A~~~--~~~~It~ed~~~A~~~v~ 410 (426)
+.+++ ..+|+.|...+++. ....||.+++.+++....
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 33444 45555555554443 244699999999886543
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=2e-20 Score=179.09 Aligned_cols=224 Identities=16% Similarity=0.167 Sum_probs=148.4
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhcch
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG 246 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g~~ 246 (426)
..++|.+..++.+....... ...+...+..++.++||+||||||||++|+++|+.++.+|+.+++++... ...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45788888877777642210 11223334567889999999999999999999999999999998875321 112223
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCc-cc
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNRPDTLDP-AL 324 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~v~vI~atn~~~~ld~-al 324 (426)
...++.+|..+....+++|||||+|.+++.+..+. .....++..+.. .+++.. ...+++||+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~---~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLV---LLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHH---HTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHH---HhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 45678889988888899999999999976553211 123334444433 344433 3446889999999988887 56
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCC----cHHHHHHHHHHHHHHHHHHcCCCccHH
Q 014332 325 LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS----TGADIRSVCTEAGMFAIRARRKTVTEK 400 (426)
Q Consensus 325 ~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~----sg~di~~l~~~A~~~A~~~~~~~It~e 400 (426)
++ ||+..+.+|.++. |.+|.........+ .+.++..++..+.|+ +.+++.++++.|...+ .....+
T Consensus 186 ~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~~ 255 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRVR 255 (272)
T ss_dssp TT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHHH
T ss_pred hc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHHH
Confidence 66 9998888876654 33444443333333 344578889988887 4566666666554322 334566
Q ss_pred HHHHHHHH
Q 014332 401 DFLDAVNK 408 (426)
Q Consensus 401 d~~~A~~~ 408 (426)
+|..++..
T Consensus 256 ~~~~~l~~ 263 (272)
T 1d2n_A 256 KFLALLRE 263 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666644
No 40
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.83 E-value=4.7e-20 Score=188.83 Aligned_cols=210 Identities=20% Similarity=0.254 Sum_probs=155.8
Q ss_pred ccccCCCCccccccCcHHHH---HHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 158 TVEEKPDVTYNDVGGCKEQI---EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+.+..++.+|++++|++..+ ..|+..+.. ....++|||||||||||++|+++|+.++.+|+.++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 45567788999999999999 788888865 12368999999999999999999999999999998
Q ss_pred cchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014332 235 GSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (426)
Q Consensus 235 ~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (426)
+... +...++.+|..+. ...++||||||||.+ +...+..|+..++. +.+++
T Consensus 83 a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l-----------~~~~q~~LL~~le~-------~~v~l 137 (447)
T 3pvs_A 83 AVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRF-----------NKSQQDAFLPHIED-------GTITF 137 (447)
T ss_dssp TTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEE
T ss_pred eccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhh-----------CHHHHHHHHHHHhc-------CceEE
Confidence 7542 2334555555544 356789999999999 33455666666653 45778
Q ss_pred EEEe--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-------CC-CCccHHHHHHhCCCCcHHHHHH
Q 014332 311 LMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-------CE-RDIRFELLARLCPNSTGADIRS 380 (426)
Q Consensus 311 I~at--n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~-------~~-~~v~l~~la~~t~g~sg~di~~ 380 (426)
|++| |....++++|++ |+. .+.|+.|+.+++..+++.++.... .. .+-.++.++..+.| +.+++.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 8877 444689999999 885 788999999999999999987622 11 12235677888766 6678888
Q ss_pred HHHHHHHHHHHH--cCCCccHHHHHHHHHHH
Q 014332 381 VCTEAGMFAIRA--RRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 381 l~~~A~~~A~~~--~~~~It~ed~~~A~~~v 409 (426)
+++.|...+... +...||.+++.+++.+.
T Consensus 214 ~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 214 TLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 888888766322 34579999999887643
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.83 E-value=1.7e-21 Score=197.86 Aligned_cols=169 Identities=19% Similarity=0.208 Sum_probs=85.6
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCC-CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh-hhhcc-
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE- 245 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~-~~~g~- 245 (426)
+|+|++++++.|..++..++.++.++..++.. +++++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 59999999999999998877776666555443 6789999999999999999999999999999999999988 59995
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE-eCCCCCCCccc
Q 014332 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA-TNRPDTLDPAL 324 (426)
Q Consensus 246 ~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a-tn~~~~ld~al 324 (426)
.+..++.+|..+... +++||++.+..... .....+.+.+|+..++++....++ +++ ||+++.||++|
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~~~------~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRARAE------DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhccch------hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 789999999988765 35899888753321 122346677888899988666554 455 99999999999
Q ss_pred cCCCCcceEEEecCCCHH-HHHHHHH
Q 014332 325 LRPGRLDRKVEFGLPDLE-SRTQIFK 349 (426)
Q Consensus 325 ~r~gRf~~~i~~~~P~~~-er~~Il~ 349 (426)
+||||||+.|++++|+.. .|.+||.
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp --------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhhc
Confidence 999999999999999987 7877763
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.83 E-value=7.9e-20 Score=179.08 Aligned_cols=209 Identities=20% Similarity=0.209 Sum_probs=148.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
..|.+++++.+|++++|.+++++.++.++.. ...+..+|++||||||||++|+++|++++.+++.+++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4688899999999999999999999999873 2456678889999999999999999999999999998
Q ss_pred chhhhhhhcchHHHHHHHHHH-HHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014332 236 SELVQKYVGEGARMVRELFQM-ARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~-a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (426)
+... ...++..+.. +.. ..+.||||||+|.+.+ .+.+..++.+++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH-----GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC-----CCCcEE
Confidence 7642 2334443333 332 2578999999999921 56778888888764 356789
Q ss_pred EEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHh-------cCCCC-CC-ccHHHHHHhCCCCcHHHHHHH
Q 014332 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR-------TMNCE-RD-IRFELLARLCPNSTGADIRSV 381 (426)
Q Consensus 311 I~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~-------~~~~~-~~-v~l~~la~~t~g~sg~di~~l 381 (426)
|++||.+..+++++++ || ..+.|+.|+.++|.+|++.+.. ..++. .+ -.++.++..+.|-. +++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHH
T ss_pred EEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHH
Confidence 9999999999999999 88 4799999999998776655432 22222 22 34677888876633 344444
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 382 CTEAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 382 ~~~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
++.++ ....||.+++..++..
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHG------GGTCBCC---------
T ss_pred HHHHh------ccCCCCHHHHHHHhCC
Confidence 44443 3345777777765443
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.82 E-value=5.3e-20 Score=183.59 Aligned_cols=234 Identities=21% Similarity=0.256 Sum_probs=157.2
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHH--hhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh-hhcch
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFV--KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEG 246 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~--~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~-~~g~~ 246 (426)
|+|++.+++.+..++........... .....++.++||+||||||||++|+++|+.++.+|+.++++.+... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 79999999999998853221111000 0011367899999999999999999999999999999999998754 77775
Q ss_pred -HHHHHHHHHHH----HcCCCEEEEEeCCCcccCCccCCCCCCChH---HHHHHHHHHHHhc------C----------C
Q 014332 247 -ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNE---VQRTMLEIVNQLD------G----------F 302 (426)
Q Consensus 247 -~~~v~~lf~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~---~~~~l~~ll~~l~------~----------~ 302 (426)
...++.+|..+ ....++||||||+|.+...+...+.+.+.. ++..|+++|+... + +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677777665 334577999999999987765443333222 6666666666110 0 1
Q ss_pred CCCCCeEEEEEeCCC----------CC-----------------------------------CCccccCCCCcceEEEec
Q 014332 303 DARGNIKVLMATNRP----------DT-----------------------------------LDPALLRPGRLDRKVEFG 337 (426)
Q Consensus 303 ~~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~gRf~~~i~~~ 337 (426)
-...|+++|+++|.. .. +.|+|++ ||+..+.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 133466677776642 11 6788888 999999999
Q ss_pred CCCHHHHHHHHHH----HHh-------cCCCCCCc---cHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHcCC------
Q 014332 338 LPDLESRTQIFKI----HTR-------TMNCERDI---RFELLAR--LCPNSTGADIRSVCTEAGMFAIRARRK------ 395 (426)
Q Consensus 338 ~P~~~er~~Il~~----~l~-------~~~~~~~v---~l~~la~--~t~g~sg~di~~l~~~A~~~A~~~~~~------ 395 (426)
+|+.+++.+|+.. .+. ..+..-.+ .++.|+. ....+..++|+++++++...++.+...
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~ 334 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEK 334 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCce
Confidence 9999999999886 221 11221112 2345554 334556789999999998877765421
Q ss_pred -CccHHHHHHH
Q 014332 396 -TVTEKDFLDA 405 (426)
Q Consensus 396 -~It~ed~~~A 405 (426)
.|+.+++.+.
T Consensus 335 ~~I~~~~v~~~ 345 (363)
T 3hws_A 335 VVIDESVIDGQ 345 (363)
T ss_dssp EECHHHHTTCC
T ss_pred eEEcHHHHhCc
Confidence 3666665443
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.82 E-value=2.7e-19 Score=176.59 Aligned_cols=225 Identities=16% Similarity=0.215 Sum_probs=149.8
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC-------c---
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-------C--- 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-------~--- 229 (426)
...++.+|++++|.+..++.+...... ..+.++||+||||||||++|+++|+.++. +
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 445778999999999987765444332 13456999999999999999999998863 2
Q ss_pred -----------------------EEEEecchhhhhhhcchHHHHHHHHHHH---------HcCCCEEEEEeCCCcccCCc
Q 014332 230 -----------------------FIRVIGSELVQKYVGEGARMVRELFQMA---------RSKKACIVFFDEVDAIGGAR 277 (426)
Q Consensus 230 -----------------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a---------~~~~p~Il~iDEiD~l~~~r 277 (426)
++.+..........|... +...+... ....+++|||||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---- 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL---- 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC----
Confidence 221111110111111100 01111111 0113579999999998
Q ss_pred cCCCCCCChHHHHHHHHHHHHhc----CCC----CCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCC-CHHHHHHH
Q 014332 278 FDDGVGGDNEVQRTMLEIVNQLD----GFD----ARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLP-DLESRTQI 347 (426)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l~----~~~----~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~~~~P-~~~er~~I 347 (426)
+...+..|+++++... ... ...++++|+|||... .++++|++ ||+..+.++.| +.+++.+|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 6778888888887621 111 123788999999754 89999999 99988999999 67777788
Q ss_pred HHHHHh-------------------------------cCCCCCCccHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHHc
Q 014332 348 FKIHTR-------------------------------TMNCERDIRFELLARLCPN---STGADIRSVCTEAGMFAIRAR 393 (426)
Q Consensus 348 l~~~l~-------------------------------~~~~~~~v~l~~la~~t~g---~sg~di~~l~~~A~~~A~~~~ 393 (426)
++.++. ...++ +-.++.++..+.+ -+.+.+.++++.|...|..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 866321 11222 1123444443322 256899999999999998888
Q ss_pred CCCccHHHHHHHHHHHHhhc
Q 014332 394 RKTVTEKDFLDAVNKVIKGY 413 (426)
Q Consensus 394 ~~~It~ed~~~A~~~v~~~~ 413 (426)
+..|+.+|+.+|+..+....
T Consensus 307 ~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp CSBCCHHHHHHHHHHHHGGG
T ss_pred CCcCCHHHHHHHHHHHHhhc
Confidence 88999999999999886543
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.82 E-value=2.1e-19 Score=166.18 Aligned_cols=208 Identities=19% Similarity=0.247 Sum_probs=154.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc-------
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~------- 229 (426)
.+.+.+.+..|++++|.+..++.|..++.. + ..+..++|+||||+|||++++++++.++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 79 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 79 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 356678888999999999999999999864 1 235579999999999999999999977432
Q ss_pred -----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHH
Q 014332 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (426)
Q Consensus 230 -----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 288 (426)
++.+.... ......++.++..+. ...+.+|+|||+|.+ +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~ 142 (250)
T 1njg_A 80 CGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 142 (250)
T ss_dssp CSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHH
Confidence 22222211 112233455555432 235789999999998 5566
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHH
Q 014332 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (426)
Q Consensus 289 ~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la 367 (426)
+..++.+++. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...+.. .+-.+..++
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 6666666653 34678999999999999999988 76 689999999999999999988765433 223467788
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 368 RLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 368 ~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
..+.| +++.+.++|+.|... ....||.+++.+++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 88877 778999999887543 23479999998875
No 46
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.82 E-value=2.6e-19 Score=183.24 Aligned_cols=220 Identities=20% Similarity=0.308 Sum_probs=157.7
Q ss_pred CCCCcccccc-CcH--HHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEE
Q 014332 162 KPDVTYNDVG-GCK--EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (426)
Q Consensus 162 ~~~~~~~di~-G~~--~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v 233 (426)
.|..+|++++ |.+ .....+..+...+ + . +.+++||||||||||+||+++++.+ +.+++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4566899977 543 3444455554431 1 2 6789999999999999999999988 8889999
Q ss_pred ecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014332 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (426)
Q Consensus 234 ~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~a 313 (426)
++..+...+.+.........|.......++||||||+|.+.+ ....+..++.+++.+. ..+.. +|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~---~~~~~-iIit 233 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELH---DSGKQ-IVIC 233 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHH---TTTCE-EEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHH---HCCCe-EEEE
Confidence 998876655433222112233333333677999999999954 2356677777777653 23334 4445
Q ss_pred eCC-CCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHH
Q 014332 314 TNR-PDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 386 (426)
Q Consensus 314 tn~-~~~---ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~ 386 (426)
|+. +.. +++++++ ||. ..+.++.|+.++|..|++..+...++. ++-.+..|+..+.| +.+++..+++.+.
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~ 310 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 554 443 8899998 886 789999999999999999988754433 22346788998876 7889999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHH
Q 014332 387 MFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 387 ~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
..|...+. .||.+++.+++....
T Consensus 311 ~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 311 VYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHhCC-CCCHHHHHHHHHHHh
Confidence 88876554 699999999987654
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.82 E-value=4.2e-19 Score=174.54 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=157.6
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh--
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 239 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~-- 239 (426)
..+..+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++..-.
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh
Confidence 3444567899999999988887753 35899999999999999999999999999998874211
Q ss_pred hhhhcchHH-HHHHHHHHHHcC--CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc----C--CCCCCCeEE
Q 014332 240 QKYVGEGAR-MVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKV 310 (426)
Q Consensus 240 ~~~~g~~~~-~v~~lf~~a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~--~~~~~~v~v 310 (426)
....|.... .....|. .... ..+||||||+|.+ +...+..+++.+++.. + .....+++|
T Consensus 86 ~~l~g~~~~~~~~~~~~-~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 86 SDLIGTMIYNQHKGNFE-VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp HHHHEEEEEETTTTEEE-EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred hhcCCceeecCCCCceE-eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 111111000 0000000 0000 1269999999998 6778888888887632 1 122446788
Q ss_pred EEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-----------------------CCcc
Q 014332 311 LMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-----------------------RDIR 362 (426)
Q Consensus 311 I~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-----------------------~~v~ 362 (426)
|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++...... ++..
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 88888543 38999999 999899999999999999999887643110 0111
Q ss_pred HHHHHHhC-------------------CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 363 FELLARLC-------------------PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 363 l~~la~~t-------------------~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
++.++... .|.+++.+..+++.|...|..+++..|+.+|+.+++..+...
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 23333211 256899999999999999999999999999999999988643
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=3.3e-19 Score=174.81 Aligned_cols=220 Identities=21% Similarity=0.256 Sum_probs=154.6
Q ss_pred CCCCcccccc-C--cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 162 KPDVTYNDVG-G--CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 162 ~~~~~~~di~-G--~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
.|..+|++++ | .......++.++..+ ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3556888876 4 445556666666542 1346789999999999999999999988 899999999
Q ss_pred chhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 236 ~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.++...+.+.........|..... .+++|||||+|.+.. ....+..+..+++.+. ..+..+|+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~---~~~~~iii~~~~ 140 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLY---LLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHH---HTTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 988766554433222223333222 367999999999853 3356667777766543 233455555655
Q ss_pred CCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHH-
Q 014332 316 RPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF- 388 (426)
Q Consensus 316 ~~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~- 388 (426)
.+. .+++++++ ||. ..+.+++ +.+++..|++.++...+.. ++..++.++..+ | +.+++.+++..+...
T Consensus 141 ~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~ 215 (324)
T 1l8q_A 141 HPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKG 215 (324)
T ss_dssp CGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHC
T ss_pred ChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcC
Confidence 554 68899998 886 6899999 9999999999998765543 223467788888 5 677888888887765
Q ss_pred --HHH-HcCCCc-cHHHHHHHHHHHH
Q 014332 389 --AIR-ARRKTV-TEKDFLDAVNKVI 410 (426)
Q Consensus 389 --A~~-~~~~~I-t~ed~~~A~~~v~ 410 (426)
++. .....| |.+++.+++....
T Consensus 216 ~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 216 FEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCCHHHHHHHHHHHh
Confidence 111 233458 8899999887653
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=4.4e-20 Score=192.68 Aligned_cols=230 Identities=18% Similarity=0.232 Sum_probs=152.3
Q ss_pred ccccccccCCCCccccccCcHHHHHHHHHHHhcCcc-ChhHHHhhCCC---CCCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML-HPEKFVKLGID---PPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~-~~~~~~~~g~~---~~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
...+|++++++.+|++|+|.+.+++.|++++..... ++..|...|.. +++++||+||||||||++|+++|++++.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 345799999999999999999999999999975221 22333333432 56899999999999999999999999999
Q ss_pred EEEEecchhhhhhhcchHH-------HHHHHHHHH-----HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHH
Q 014332 230 FIRVIGSELVQKYVGEGAR-------MVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (426)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~-------~v~~lf~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (426)
++.++++++.........- .+..+|..+ ....++||||||+|.+... .......+..+++
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCR 176 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHH
Confidence 9999998875543211100 012233333 2356789999999999542 1223355556655
Q ss_pred HhcCCCCCCCeEEEEEeCCC--CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCc
Q 014332 298 QLDGFDARGNIKVLMATNRP--DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNST 374 (426)
Q Consensus 298 ~l~~~~~~~~v~vI~atn~~--~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~s 374 (426)
. .++.+|+++|.. ..+. .+. |+...+.|+.|+.+++.+++...+...++. .+-.+..++..+.|
T Consensus 177 ~-------~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-- 243 (516)
T 1sxj_A 177 K-------TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-- 243 (516)
T ss_dssp H-------CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT--
T ss_pred h-------cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC--
Confidence 4 122345555543 3343 344 445699999999999999998877554332 23347788888865
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 375 GADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 375 g~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
+++.+++.....+. ....|+.+++..++..
T Consensus 244 --diR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 244 --DIRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp --CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred --cHHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 44444444433332 4456888887776653
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=3.4e-19 Score=175.90 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=157.6
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC------Cc
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD------AC 229 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~------~~ 229 (426)
..+.+++++.+|++++|.+++++.|..++.. ..+.++||+||||||||++|+++|+.++ ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 4678889999999999999999999998864 1224599999999999999999999864 45
Q ss_pred EEEEecchhhhhhhcchHHHHHHHHHHHH----------------cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHH
Q 014332 230 FIRVIGSELVQKYVGEGARMVRELFQMAR----------------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 293 (426)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----------------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 293 (426)
++.+++++... ...++..+.... ...+.||||||+|.+ +...+..++
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll 154 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALR 154 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHH
Confidence 77888765421 112222111111 134579999999998 566777888
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCC
Q 014332 294 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (426)
Q Consensus 294 ~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g 372 (426)
.+++.. ..++.+|++||.+..+.+++++ |+. .+.|++|+.++...+++..+...++. .+-.++.++..+.|
T Consensus 155 ~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 155 RTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp HHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred HHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 887763 3467788899999999999998 885 89999999999999999888655443 23346778888877
Q ss_pred CcHHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHH
Q 014332 373 STGADIRSVCTEAGMFAIRARRK-TVTEKDFLDAVN 407 (426)
Q Consensus 373 ~sg~di~~l~~~A~~~A~~~~~~-~It~ed~~~A~~ 407 (426)
+.+.+.++++.+...+.+.+.. .||.+|+..++.
T Consensus 227 -~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 227 -DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp -CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 4556777777777665444333 799999887654
No 51
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.80 E-value=6e-18 Score=166.93 Aligned_cols=222 Identities=18% Similarity=0.244 Sum_probs=163.9
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
++....+.++++++|.+.+++.+...+.... ..-.++.+++|+||||||||||++++|+.+++++...+++.
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~--------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAK--------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHH--------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 3445566689999999999999888775310 01245678999999999999999999999999888777655
Q ss_pred hhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc-------CCC------C
Q 014332 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------A 304 (426)
Q Consensus 238 l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-------~~~------~ 304 (426)
+.. ...+..++.. ...++|+||||++.+ ....+..++..+.... +.. .
T Consensus 87 ~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l-----------~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 87 LVK------QGDMAAILTS--LERGDVLFIDEIHRL-----------NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp CCS------HHHHHHHHHH--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCCCC--------------
T ss_pred hcC------HHHHHHHHHH--ccCCCEEEEcchhhc-----------CHHHHHHHHHHHHhcccceeeccCccccccccc
Confidence 432 1122233322 234569999999998 3445555555544321 000 1
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHH
Q 014332 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 305 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~ 383 (426)
...+.++++|+++..|++++++ ||...+.+++|+.+++.+|++......+.. .+-.+..++.++.| +++.+..+++
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~ 224 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTK 224 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1246788899999999999999 999899999999999999999888765544 22335778888877 5679999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 384 EAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 384 ~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
.+..+|...+...||.+++.+|+...
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 99999988888889999999998875
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.80 E-value=9.8e-19 Score=162.56 Aligned_cols=206 Identities=12% Similarity=0.137 Sum_probs=148.4
Q ss_pred CCCccccccC---cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 163 PDVTYNDVGG---CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 163 ~~~~~~di~G---~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
|..+|++++| ...+++.+..++.. ..+.+++|+||||||||++|+++++++ +.+++.++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3468888886 34677777777653 256789999999999999999999976 4788889988
Q ss_pred hhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 237 ~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
++...+... +.. ...+.+|||||+|.+.. ....+..+..+++... ..+.+.+|++|+.
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 776543211 111 13456999999999843 2334666777766542 1233435555554
Q ss_pred -CC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014332 317 -PD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 317 -~~---~ld~al~r~gRf~--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A 389 (426)
+. .+++++.+ ||. ..+.++.|+.+++.+++..++...+.. .+..++.++..+.| +.+++.++++.|...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 33 45678888 775 899999999999999999998765543 22345778888866 7789999999999888
Q ss_pred HHHcCCCccHHHHHHHHH
Q 014332 390 IRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 390 ~~~~~~~It~ed~~~A~~ 407 (426)
...+ ..||.+++.+++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6555 4699999988863
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=9.9e-19 Score=174.52 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=155.3
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----------CCcEEEEecc
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----------DACFIRVIGS 236 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----------~~~~i~v~~~ 236 (426)
++++|.++.++.+..++..... ...+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7799999999999988864221 2456789999999999999999999987 8999999987
Q ss_pred hhh-hh----------h-------hcc-hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHH-HHHHH
Q 014332 237 ELV-QK----------Y-------VGE-GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT-MLEIV 296 (426)
Q Consensus 237 ~l~-~~----------~-------~g~-~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll 296 (426)
... .. . .+. ....+..++..+....+ +|||||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 643 11 1 011 12335555555555544 99999999984321 1223 33443
Q ss_pred HHhcCCCCCCCeEEEEEeCCC---CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhc----CCCCCCccHHHHHHh
Q 014332 297 NQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLARL 369 (426)
Q Consensus 297 ~~l~~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~----~~~~~~v~l~~la~~ 369 (426)
... .++.+|++||.+ ..+++++++ ||...+.|++|+.++..+|++.++.. ..+. +-.++.++..
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 322 688999999987 678999988 98789999999999999999998863 2222 2345667777
Q ss_pred CC---CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 370 CP---NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 370 t~---g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
+. | +.+.+.++|+.|...|. +...|+.+++..++..+.
T Consensus 231 ~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 231 SAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 65 4 45677788899888775 567899999999998764
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=1.3e-19 Score=161.80 Aligned_cols=163 Identities=26% Similarity=0.368 Sum_probs=124.6
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
+..++.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 80 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred HHHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCc
Confidence 345567899999999999999888753 346789999999999999999999986 788
Q ss_pred EEEEecchhh--hhhhcchHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014332 230 FIRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (426)
Q Consensus 230 ~i~v~~~~l~--~~~~g~~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (426)
++.+++..+. ..+.+.....+..++..+. ...++||||||+|.+...+... .....+..+..++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~-------~~ 150 (195)
T 1jbk_A 81 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALA-------RG 150 (195)
T ss_dssp EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TT
T ss_pred EEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhc-------cC
Confidence 9999988876 3455666677777877653 4668899999999997543211 12233455555543 34
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHH
Q 014332 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (426)
Q Consensus 307 ~v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il 348 (426)
++.+|++||.+. .+++++++ ||. .+.++.|+.+++.+|+
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 678899998875 78999999 997 6999999999998875
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.79 E-value=1.3e-19 Score=197.36 Aligned_cols=198 Identities=20% Similarity=0.281 Sum_probs=146.1
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCC---C-CcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---P-KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~-~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
.+++|++.+++.+...+... ..|... | .++||+||||||||++|+++|+.+ +.+|++++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 45999999999999998752 223322 2 269999999999999999999987 78999999999988
Q ss_pred hhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCCCCeEEEEEe
Q 014332 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARGNIKVLMAT 314 (426)
Q Consensus 241 ~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~~~v~vI~at 314 (426)
.+... ...++...+...++||||||||.+ +++++..|+++++...-. ....++++|+||
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 76554 223344455567789999999998 789999999999874321 123578999999
Q ss_pred CCCCC------------CCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC-------CCCCCc---cHHHHHHh--C
Q 014332 315 NRPDT------------LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-------NCERDI---RFELLARL--C 370 (426)
Q Consensus 315 n~~~~------------ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~-------~~~~~v---~l~~la~~--t 370 (426)
|.+.. +.|+|++ ||+..|.|++|+.+++..|++.++..+ +..-.+ .++.|+.. .
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCC
Confidence 97654 7888988 999999999999999999999887543 111112 23455543 2
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 014332 371 PNSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 371 ~g~sg~di~~l~~~A~~~A~ 390 (426)
..++.++|+++++++...++
T Consensus 706 ~~~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 706 LEYGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp TTTTTTTHHHHHHHHTHHHH
T ss_pred CCCCChHHHHHHHHHHHHHH
Confidence 34566888888887765443
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.78 E-value=8.9e-19 Score=170.14 Aligned_cols=210 Identities=20% Similarity=0.211 Sum_probs=147.1
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEE
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFI 231 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i 231 (426)
.|.+++++.+|++++|.+.+++.+..++.. + ...++||+||||||||++|+++++.+ +.+++
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 567888999999999999999999888753 1 22349999999999999999999986 34678
Q ss_pred EEecchhhhhhhcchHHHHHHHHHHH-H-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 014332 232 RVIGSELVQKYVGEGARMVRELFQMA-R-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (426)
Q Consensus 232 ~v~~~~l~~~~~g~~~~~v~~lf~~a-~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~ 309 (426)
.++++.... .......+....... . ...+.||+|||+|.+ ....+..+..++ + ....++.
T Consensus 73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~l---e--~~~~~~~ 134 (319)
T 2chq_A 73 EMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTM---E--MYSKSCR 134 (319)
T ss_dssp EEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGT---S--SSSSSEE
T ss_pred EEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHH---H--hcCCCCe
Confidence 888776432 111122222222111 1 245789999999998 444444444443 3 2346788
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 014332 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMF 388 (426)
Q Consensus 310 vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~ 388 (426)
+|++||.+..+.+++.+ |+. .+.|++|+.+++..++..++...+.. .+..+..++..+.| +.+.+.++++.+...
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~ 210 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI 210 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 99999999999999999 885 89999999999999999988766554 22345667777765 444555555554321
Q ss_pred HHHHcCCCccHHHHHHHH
Q 014332 389 AIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 389 A~~~~~~~It~ed~~~A~ 406 (426)
...||.+++..++
T Consensus 211 -----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 -----GEVVDADTIYQIT 223 (319)
T ss_dssp -----SSCBCHHHHHHHT
T ss_pred -----CCCCCHHHHHHHH
Confidence 3457777765543
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=5.6e-18 Score=164.77 Aligned_cols=208 Identities=16% Similarity=0.200 Sum_probs=154.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcE
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~ 230 (426)
..+.+++++.+|++++|.+..++.|..++.. + ..+ +++|+||||+|||++|+++++.+ +..+
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 75 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGV 75 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCE
Confidence 3567788899999999999999999999864 1 223 39999999999999999999986 3457
Q ss_pred EEEecchhhhhhhcchHHHHHHHHHHHH-------cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC
Q 014332 231 IRVIGSELVQKYVGEGARMVRELFQMAR-------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (426)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~lf~~a~-------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (426)
+.+++++.. +...++.++.... ...+.+|+|||+|.+ ....+..+..+++.
T Consensus 76 ~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~----- 133 (323)
T 1sxj_B 76 LELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMEL----- 133 (323)
T ss_dssp EEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHH-----
T ss_pred EEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhc-----
Confidence 777776531 1334455555443 234789999999998 45566677777765
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHH
Q 014332 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 382 (426)
Q Consensus 304 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~ 382 (426)
...++.+|++||.+..+.+++++ |+. .+.|++|+.++..++++.++...+.. .+-.+..++..+.| +.+.+.+++
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l 209 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNL 209 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 34678899999999999999998 875 89999999999999999888655443 22345678888866 444555555
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHH
Q 014332 383 TEAGMFAIRARRKTVTEKDFLDAVN 407 (426)
Q Consensus 383 ~~A~~~A~~~~~~~It~ed~~~A~~ 407 (426)
+.+... ...|+.+++.+++.
T Consensus 210 ~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 210 QSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHH-----HSSBCHHHHHHHHT
T ss_pred HHHHhc-----CCCcCHHHHHHHHC
Confidence 554421 14688888877654
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.78 E-value=1.9e-18 Score=188.28 Aligned_cols=227 Identities=23% Similarity=0.290 Sum_probs=167.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------C
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~ 227 (426)
+.....+-+|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|+.+ +
T Consensus 176 l~~~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~ 242 (758)
T 1r6b_X 176 LNQLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred HHHHHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 34445567899999999999999888754 356789999999999999999999986 6
Q ss_pred CcEEEEecchhh--hhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014332 228 ACFIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (426)
Q Consensus 228 ~~~i~v~~~~l~--~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (426)
..++.++...+. .++.|+.+..++.+|..+....++||||||+|.+.+.+... ++..+.. . .+..+-..
T Consensus 243 ~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~----~---~L~~~l~~ 313 (758)
T 1r6b_X 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAA----N---LIKPLLSS 313 (758)
T ss_dssp CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHH----H---HHSSCSSS
T ss_pred CEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHH----H---HHHHHHhC
Confidence 778888887776 46788889999999999988888999999999997654221 1122222 2 22233346
Q ss_pred CCeEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHHhC-----
Q 014332 306 GNIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARLC----- 370 (426)
Q Consensus 306 ~~v~vI~atn~~-----~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~-~~v~l~~la~~t----- 370 (426)
+++.+|++||.+ ..+|+++.+ ||. .+.|+.|+.+++.+||+.+...+ .+. .+-.+..++..+
T Consensus 314 ~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_dssp CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcc
Confidence 788999999864 357899999 997 79999999999999999877542 221 112234444433
Q ss_pred CCCcHHHHHHHHHHHHHHHHH----HcCCCccHHHHHHHHHHH
Q 014332 371 PNSTGADIRSVCTEAGMFAIR----ARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 371 ~g~sg~di~~l~~~A~~~A~~----~~~~~It~ed~~~A~~~v 409 (426)
..+.+..+..++.+|+..+.. .....|+.+|+..++...
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 345666888899988866544 235679999999998775
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.78 E-value=3.9e-19 Score=178.06 Aligned_cols=237 Identities=20% Similarity=0.222 Sum_probs=148.2
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHH-----------------hhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFV-----------------KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~-----------------~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
.|+|++.+++.|..++..++.+..... .-...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988843222221100 112345778999999999999999999999999999
Q ss_pred EEecchhh-hhhhcch-HHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCC---CChHHHHHHHHHHHHhc-C
Q 014332 232 RVIGSELV-QKYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVG---GDNEVQRTMLEIVNQLD-G 301 (426)
Q Consensus 232 ~v~~~~l~-~~~~g~~-~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~---~~~~~~~~l~~ll~~l~-~ 301 (426)
.++++.+. ..+.|.. ...+..++..+. ...++||||||+|.+...+...... ....++..|+.+++... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455553 344555555432 2356799999999997654322111 12347778888877321 0
Q ss_pred C---------------CCCCCeEEEEEeCC-----------------------------------------CCCCCcccc
Q 014332 302 F---------------DARGNIKVLMATNR-----------------------------------------PDTLDPALL 325 (426)
Q Consensus 302 ~---------------~~~~~v~vI~atn~-----------------------------------------~~~ld~al~ 325 (426)
+ -...++++|++||. ...+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 11356788888872 113567777
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHH----HHh----c---CCCC---CCccHHHHHHhCC--CCcHHHHHHHHHHHHHHH
Q 014332 326 RPGRLDRKVEFGLPDLESRTQIFKI----HTR----T---MNCE---RDIRFELLARLCP--NSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 326 r~gRf~~~i~~~~P~~~er~~Il~~----~l~----~---~~~~---~~v~l~~la~~t~--g~sg~di~~l~~~A~~~A 389 (426)
+ ||+..+.|++++.++...|+.. ++. . .+.. .+-.+..|+.... ..+.+++++++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 7 9999999999999999998862 111 1 1111 1122455555432 346789999999988876
Q ss_pred HHHcC------CCccHHHHHHHHH
Q 014332 390 IRARR------KTVTEKDFLDAVN 407 (426)
Q Consensus 390 ~~~~~------~~It~ed~~~A~~ 407 (426)
+.+.. ..||.+++..+..
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HhhccCCCCCEEEEeHHHhcCCCC
Confidence 65432 2589888876543
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.5e-19 Score=174.96 Aligned_cols=215 Identities=10% Similarity=0.092 Sum_probs=150.7
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCcEEEEecchhh
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELV 239 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~~i~v~~~~l~ 239 (426)
|.|.++++++|..++... +....+.+++|+||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 788899999988887642 223578899999999999999999999988 3568899987654
Q ss_pred hh----------hh------cchHHHHHHHHHHH--HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC
Q 014332 240 QK----------YV------GEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (426)
Q Consensus 240 ~~----------~~------g~~~~~v~~lf~~a--~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (426)
+. .. +.....++.+|... ....++||||||+|.+. .|..|+.+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 32 22 23456677888764 35667899999999995 1356666666433
Q ss_pred CCCCCCeEEEEEeCCCCC----CCccccCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCC------------------
Q 014332 302 FDARGNIKVLMATNRPDT----LDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE------------------ 358 (426)
Q Consensus 302 ~~~~~~v~vI~atn~~~~----ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~~~------------------ 358 (426)
....++.||+++|..+. |++++++ ||. ..|.|++++.++..+|++..+....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 24568999999998765 3455666 886 689999999999999999998764210
Q ss_pred ------------------CCccHHHHHHhCCCCcH--HHHHHHHHHHHHHHHHH---------cCCCccHHHHHHHHHHH
Q 014332 359 ------------------RDIRFELLARLCPNSTG--ADIRSVCTEAGMFAIRA---------RRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 359 ------------------~~v~l~~la~~t~g~sg--~di~~l~~~A~~~A~~~---------~~~~It~ed~~~A~~~v 409 (426)
.+-.++.+|+.....+| +-.-.+|+.|+..|-++ +...||.+.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 11124555654322222 34446888888888653 12357777777777665
Q ss_pred H
Q 014332 410 I 410 (426)
Q Consensus 410 ~ 410 (426)
+
T Consensus 316 ~ 316 (318)
T 3te6_A 316 I 316 (318)
T ss_dssp H
T ss_pred h
Confidence 4
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.78 E-value=1.4e-18 Score=168.70 Aligned_cols=202 Identities=23% Similarity=0.330 Sum_probs=145.0
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCC----CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~ 240 (426)
.+++|++.+++.+...+... ..++ .+..++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~--------~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHH--------HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hhcCCHHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 35889999999999998752 1122 233479999999999999999999987 56799999987643
Q ss_pred h-----hhcchHH-----HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC------C
Q 014332 241 K-----YVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------A 304 (426)
Q Consensus 241 ~-----~~g~~~~-----~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~------~ 304 (426)
. .+|.... ....+........+++|||||+|.+ +...+..|+++++...... .
T Consensus 89 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 89 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp TTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEE
T ss_pred cccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEE
Confidence 2 1211000 0012333344456689999999998 6788999999988643111 1
Q ss_pred CCCeEEEEEeCC--------------------------CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC--
Q 014332 305 RGNIKVLMATNR--------------------------PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-- 356 (426)
Q Consensus 305 ~~~v~vI~atn~--------------------------~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~-- 356 (426)
..++++|+|||. ...++++|++ ||+..+.|++|+.+++..|++.++....
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 136789999998 4578889988 9999999999999999999998876531
Q ss_pred -----CC---CCccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 014332 357 -----CE---RDIRFELLARLCP--NSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 357 -----~~---~~v~l~~la~~t~--g~sg~di~~l~~~A~~~A~ 390 (426)
.. .+-.++.++...- ..+.++|+++|+.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred HHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 1123456666554 5678899999998877554
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=7.3e-18 Score=164.22 Aligned_cols=196 Identities=18% Similarity=0.229 Sum_probs=143.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC-----CcE
Q 014332 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (426)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~-----~~~ 230 (426)
..|.+++++.+|++++|.+.+++.|..++.. + ...++||+||||||||++|+++++.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 4577889999999999999999999998864 2 233599999999999999999999863 347
Q ss_pred EEEecchhhhhhhcchHHHHHHHHHHH--HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCe
Q 014332 231 IRVIGSELVQKYVGEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (426)
Q Consensus 231 i~v~~~~l~~~~~g~~~~~v~~lf~~a--~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v 308 (426)
+.+++++.... ......+....... ....+.+|+|||+|.+ +...+..++.+++. ...++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~-----~~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEM-----FSSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHH-----TTTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHh-----cCCCC
Confidence 77777654221 11111122111100 1145789999999998 56677778777775 24578
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHH
Q 014332 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAG 386 (426)
Q Consensus 309 ~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~ 386 (426)
.+|++||.+..+.+++.+ |+. .+.|++|+.++...+++..+...+.. .+-.+..++..+.| +.+.+.++++.+.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 899999999999999998 885 89999999999999999888765543 22345677777766 5556666666554
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=6.4e-18 Score=167.94 Aligned_cols=223 Identities=19% Similarity=0.253 Sum_probs=158.0
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc------CCcEEEEecchh
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSEL 238 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l------~~~~i~v~~~~l 238 (426)
..+++++|.++.++.|.+++...+. ...+..++|+||||||||++++++++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3457899999999999988764211 1456789999999999999999999988 889999997643
Q ss_pred hh------hh----------hcc-hHHHHHHHHHHHHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc
Q 014332 239 VQ------KY----------VGE-GARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (426)
Q Consensus 239 ~~------~~----------~g~-~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~ 300 (426)
.. .. .+. .......++...... .|++|+|||+|.+.... +.. .+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~---~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDD---ILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CST---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCH---HHHHHhhchh
Confidence 22 10 111 223344555555443 38999999999985321 122 3444444443
Q ss_pred CCCCCCCeEEEEEeCCC---CCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHHhcCCCC---CCccHHHHHHhCC--
Q 014332 301 GFDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFELLARLCP-- 371 (426)
Q Consensus 301 ~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~~~~P~~~er~~Il~~~l~~~~~~---~~v~l~~la~~t~-- 371 (426)
.. ...++.+|++||.+ ..+++.+.+ ||. +.+.|++++.++..++++.++...... .+-.+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 32 35678899999977 467888887 775 589999999999999999877632111 1223455666665
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 372 -NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 372 -g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
| +++.+.++|..|...|...+...|+.+++..|+..+.
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 5 5667888999999988877888999999999988764
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.77 E-value=1e-18 Score=180.26 Aligned_cols=211 Identities=20% Similarity=0.277 Sum_probs=144.8
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------C
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~ 227 (426)
+.+...+-++++|+|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +
T Consensus 170 l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 236 (468)
T 3pxg_A 170 LTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (468)
T ss_dssp HHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 44556778899999999999999998864 345689999999999999999999986 7
Q ss_pred CcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 228 ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 228 ~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
.+|+.++++ ..|.|+.+..++.+|..+....++||||| + ..+.++.|..++ ..+.
T Consensus 237 ~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g~ 291 (468)
T 3pxg_A 237 KRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGE 291 (468)
T ss_dssp CCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSS
T ss_pred CeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCCC
Confidence 889988887 67788888888999999998888999999 1 122333332222 3568
Q ss_pred eEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC----CC-CCccHHHHHHhCC-----C
Q 014332 308 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CE-RDIRFELLARLCP-----N 372 (426)
Q Consensus 308 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~----~~-~~v~l~~la~~t~-----g 372 (426)
+.+|++||.+. .++++++| ||. .+.|+.|+.+++..||+.++..+. .. .+..+..++..+. .
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred EEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 99999999987 69999999 997 599999999999999998876632 21 1222444554433 3
Q ss_pred CcHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHHHHH
Q 014332 373 STGADIRSVCTEAGMFAIRAR-RKTVTEKDFLDAVNKV 409 (426)
Q Consensus 373 ~sg~di~~l~~~A~~~A~~~~-~~~It~ed~~~A~~~v 409 (426)
+.+.....++.+|+..+..+. ...-..+++...+...
T Consensus 369 ~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 369 FLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 345577788888776554443 2233444455444443
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=1e-17 Score=166.42 Aligned_cols=207 Identities=19% Similarity=0.247 Sum_probs=152.8
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--------
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~-------- 229 (426)
+.+++.+.+|++++|.+.+++.|..++.. + ..+..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 45677888999999999999999999864 1 345578999999999999999999987542
Q ss_pred ----------------EEEEecchhhhhhhcchHHHHHHHHHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHH
Q 014332 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (426)
Q Consensus 230 ----------------~i~v~~~~l~~~~~g~~~~~v~~lf~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 289 (426)
++.+++..- .....++.++..+. ...+.||+|||+|.+ +...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~ 136 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 136 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHH
Confidence 233332210 11123455555554 234689999999998 55566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHH
Q 014332 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (426)
Q Consensus 290 ~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~ 368 (426)
..++.+++. ...++++|++|+.+..+.+.+++ |+ ..+.|+.|+.++...+++.++...+.. .+-.+..++.
T Consensus 137 ~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666653 45678999999999999999998 87 789999999999999999988765543 2223577888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
.+.| +.+.+.++++.+...+ ...||.+++.+++
T Consensus 209 ~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 209 AAEG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 8877 6678888888775433 3568888776553
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.76 E-value=1.9e-17 Score=165.25 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=158.7
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCC--cceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhh
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV 239 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~--~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~ 239 (426)
.+++++|.++.++.+..++...+. + ..+. +++|+||||||||++++++++.+ +..++.+++....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 347799999999999998864211 1 2334 89999999999999999999988 5788999876543
Q ss_pred hh------h---h-------cc-hHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC
Q 014332 240 QK------Y---V-------GE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (426)
Q Consensus 240 ~~------~---~-------g~-~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~ 301 (426)
.. . . +. .......+..... ...|.||+|||+|.+ +...+..+..+++.+..
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 21 0 0 11 1222223333332 355889999999998 45556666555543220
Q ss_pred CCCCCCeEEEEEeCCC---CCCCccccCCCCcce-EEEecCCCHHHHHHHHHHHHhcCC---CCCCccHHHHHHhC----
Q 014332 302 FDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMN---CERDIRFELLARLC---- 370 (426)
Q Consensus 302 ~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~~~---~~~~v~l~~la~~t---- 370 (426)
....++.+|++||.+ ..+++.+.+ ||.. .+.|++++.++..++++..+.... .-.+-.++.++..+
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 002578899999987 678888887 8765 899999999999999998876421 11223456777777
Q ss_pred -----CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 014332 371 -----PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVI 410 (426)
Q Consensus 371 -----~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~ 410 (426)
.| ..+.+.++|+.|...|..++...|+.+++..++..+.
T Consensus 232 ~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 232 PLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 45 5678899999999999888888999999999987753
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=7.9e-18 Score=183.38 Aligned_cols=198 Identities=20% Similarity=0.253 Sum_probs=145.9
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCC----CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh---
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 241 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~--- 241 (426)
+++|++++++.+..++.. ...|+. |..++||+||||||||++|+++|+.++.+|+.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 488999999998888764 233443 33479999999999999999999999999999999988653
Q ss_pred ---------hhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC------CC
Q 014332 242 ---------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------RG 306 (426)
Q Consensus 242 ---------~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~------~~ 306 (426)
|+|... ...+....+...++||||||||.+ +++++..|+++++...-.+. ..
T Consensus 531 ~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 333221 122444555667899999999998 78899999999886321111 24
Q ss_pred CeEEEEEeCCCC-------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-----
Q 014332 307 NIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----- 356 (426)
Q Consensus 307 ~v~vI~atn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~----- 356 (426)
+++||+|||... .++|+|++ ||+..|.|++|+.+++..|++.++....
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 675 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQ 675 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999854 67888988 9999999999999999999998886331
Q ss_pred ----CC-CCccHHHHHHhC--CCCcHHHHHHHHHHHHHHH
Q 014332 357 ----CE-RDIRFELLARLC--PNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 357 ----~~-~~v~l~~la~~t--~g~sg~di~~l~~~A~~~A 389 (426)
+. .+-.++.|+... .++..+++.++++.+...+
T Consensus 676 ~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 676 KGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp TTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 11 112244555432 3456788888888777643
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=2.3e-17 Score=181.82 Aligned_cols=208 Identities=22% Similarity=0.284 Sum_probs=142.0
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CC
Q 014332 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (426)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~ 228 (426)
.+...+.++++++|.++.++.+.+++.. ..+.+++|+||||||||++|+++|+.+ +.
T Consensus 161 ~~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 227 (854)
T 1qvr_A 161 TRLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK 227 (854)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTC
T ss_pred HHHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCC
Confidence 3455678899999999999999888754 346689999999999999999999987 88
Q ss_pred cEEEEecchhh--hhhhcchHHHHHHHHHHHHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014332 229 CFIRVIGSELV--QKYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (426)
Q Consensus 229 ~~i~v~~~~l~--~~~~g~~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 305 (426)
+++.++++.+. .++.|+....++.+|..+... .|+||||||+|.+.+.+.. .+..+....+..++. .
T Consensus 228 ~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~-------~ 297 (854)
T 1qvr_A 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA-------R 297 (854)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------T
T ss_pred eEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------C
Confidence 99999999887 567888899999999998875 6899999999999765422 122344455555553 3
Q ss_pred CCeEEEEEeCCCC----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcC----CCC-CCccHHHHHHh-----CC
Q 014332 306 GNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARL-----CP 371 (426)
Q Consensus 306 ~~v~vI~atn~~~----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~----~~~-~~v~l~~la~~-----t~ 371 (426)
+.+.+|++||.+. .+++++.| ||+. +.++.|+.+++..||+.++... ++. .+-.+..++.. +.
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~ 374 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITE 374 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCS
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhccc
Confidence 5678999998764 58999999 9985 9999999999999998776543 221 11223344443 45
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 014332 372 NSTGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 372 g~sg~di~~l~~~A~~~A~~~ 392 (426)
.|.+.....++.+|+..+...
T Consensus 375 ~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 375 RRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp SCTHHHHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHHHHHHHhh
Confidence 667778888888888765443
No 69
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=2.4e-17 Score=162.98 Aligned_cols=196 Identities=13% Similarity=0.190 Sum_probs=141.4
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHH-hcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC-------
Q 014332 157 MTVEEKPDVTYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA------- 228 (426)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~------- 228 (426)
+|++++++.+|++++|++.+++.++.++ .. + ..+. ++|+||+|+|||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 6889999999999999999999988877 32 1 2334 999999999999999999996421
Q ss_pred ----------------------cEEEEecchhhhhhhcchHHHHHHHHHHHH--------------cCCCEEEEEeCCCc
Q 014332 229 ----------------------CFIRVIGSELVQKYVGEGARMVRELFQMAR--------------SKKACIVFFDEVDA 272 (426)
Q Consensus 229 ----------------------~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~--------------~~~p~Il~iDEiD~ 272 (426)
.++.++.+... ......++..+..+. ...|.||+|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 12223222110 001112444444332 23567999999999
Q ss_pred ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHH
Q 014332 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (426)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l 352 (426)
+ +...+..++.+++.. ..++.+|++||.+..+.+++++ |+ ..+.|++|+.++...+++..+
T Consensus 146 L-----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred c-----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 7 677788888888763 3468899999999999999999 88 789999999999999999888
Q ss_pred hcCCCC-C-CccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 014332 353 RTMNCE-R-DIRFELLARLCPNSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 353 ~~~~~~-~-~v~l~~la~~t~g~sg~di~~l~~~A~~~A 389 (426)
...++. + +..+..++..+.| +.+++.++++.+...+
T Consensus 207 ~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 207 TNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 765543 2 3456788888866 5557777777665543
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.74 E-value=1.2e-17 Score=181.95 Aligned_cols=194 Identities=21% Similarity=0.275 Sum_probs=139.4
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------C
Q 014332 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (426)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~ 227 (426)
+.+...+-.+++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|+.+ +
T Consensus 170 l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~ 236 (758)
T 3pxi_A 170 LTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (758)
T ss_dssp HHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 34556777899999999999999998864 356689999999999999999999986 7
Q ss_pred CcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014332 228 ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (426)
Q Consensus 228 ~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 307 (426)
++++.+++ ..+|.|+.+..++.+|..+....++||||| + ....+..+... -..+.
T Consensus 237 ~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~-------l~~~~ 291 (758)
T 3pxi_A 237 KRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPS-------LARGE 291 (758)
T ss_dssp CCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCC-------TTSSS
T ss_pred CeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHH-------HhcCC
Confidence 88888887 566788888899999999999889999999 1 12223333222 23568
Q ss_pred eEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCc-----cHHHHHHh-----CCC
Q 014332 308 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI-----RFELLARL-----CPN 372 (426)
Q Consensus 308 v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v-----~l~~la~~-----t~g 372 (426)
+.+|++||... .++++++| || ..+.|+.|+.+++..||+.+...+.....+ .+..++.. ..+
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~ 368 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred EEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccC
Confidence 99999999988 79999999 99 579999999999999999877654322222 23334432 345
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 014332 373 STGADIRSVCTEAGMFAIRA 392 (426)
Q Consensus 373 ~sg~di~~l~~~A~~~A~~~ 392 (426)
+.+.....++.+|+..+...
T Consensus 369 ~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhh
Confidence 66777788888887665544
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=6e-18 Score=150.75 Aligned_cols=156 Identities=20% Similarity=0.336 Sum_probs=118.2
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----------CCc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----------~~~ 229 (426)
+...+.+|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred HHHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 345567899999999999999888753 346789999999999999999999987 788
Q ss_pred EEEEecchhhh--hhhcchHHHHHHHHHHHHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014332 230 FIRVIGSELVQ--KYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (426)
Q Consensus 230 ~i~v~~~~l~~--~~~g~~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 306 (426)
++.+++..+.. .+.+.....+..++..+... .+.+|||||+|.+...+... .........+..+++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~~l~~~~~-------~~ 151 (187)
T 2p65_A 81 LVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALDAGNILKPMLA-------RG 151 (187)
T ss_dssp EEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCCTHHHHHHHHH-------TT
T ss_pred EEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchHHHHHHHHHHh-------cC
Confidence 88888877753 24555666677777776654 67899999999997554311 112334455555543 35
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCC
Q 014332 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPD 340 (426)
Q Consensus 307 ~v~vI~atn~~~-----~ld~al~r~gRf~~~i~~~~P~ 340 (426)
++.+|++||.+. .+++++++ ||. .+.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 678999999764 68999999 998 59999886
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.72 E-value=5.1e-18 Score=175.59 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=137.0
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecc-----hhhhh
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-----ELVQK 241 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~-----~l~~~ 241 (426)
.|+|.+++++.+..++.. +.++||+||||||||++|+++|+.++ .+|..+.+. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 388999999888777643 46899999999999999999999884 455555543 22222
Q ss_pred hhcchHHHHHHHHHHHHcC---CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc----CCC-CCCCeEEEEE
Q 014332 242 YVGEGARMVRELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFD-ARGNIKVLMA 313 (426)
Q Consensus 242 ~~g~~~~~v~~lf~~a~~~---~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~----~~~-~~~~v~vI~a 313 (426)
+.+..... ...|..+..+ .++|||||||+.+ ++..+..|++++++.. |.. ..+..++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 11111111 1122222222 4679999999987 6888899988887532 111 1122346888
Q ss_pred eCCCCC---CCccccCCCCcceEEEecCCCH-HHHHHHHHHHHhc-------------------------CCCCCCccHH
Q 014332 314 TNRPDT---LDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHTRT-------------------------MNCERDIRFE 364 (426)
Q Consensus 314 tn~~~~---ld~al~r~gRf~~~i~~~~P~~-~er~~Il~~~l~~-------------------------~~~~~~v~l~ 364 (426)
||++.. +.+++++ ||...+.+++|+. +++..|++.+... ..++.+ -.+
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e 232 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFE 232 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHH
Confidence 886422 4458998 9999999999987 7788888765421 111111 123
Q ss_pred HHHHh---------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 014332 365 LLARL---------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 403 (426)
Q Consensus 365 ~la~~---------t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 403 (426)
.++.. ..|.|++.+..+++.|...|..+++..|+.+|+.
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 33332 2578999999999999999999999999999987
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=8.3e-17 Score=158.89 Aligned_cols=213 Identities=22% Similarity=0.271 Sum_probs=147.4
Q ss_pred cccccccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCC-----c
Q 014332 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----C 229 (426)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~-----~ 229 (426)
...|.+++++.+|++++|++.+++.|...+.. | ..| +++|+||||||||++|+++|+.+.. .
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 45688899999999999999999999998864 2 223 4999999999999999999998633 3
Q ss_pred EEEEecchhhhhhhcchHHHHHHHHHHHH------cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC
Q 014332 230 FIRVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (426)
Q Consensus 230 ~i~v~~~~l~~~~~g~~~~~v~~lf~~a~------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~ 303 (426)
++.+++++.. +...++..+.... ...+.|++|||+|.+ ....+..++.+++..
T Consensus 79 ~~~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~---- 137 (340)
T 1sxj_C 79 VLELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY---- 137 (340)
T ss_dssp EEEECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT----
T ss_pred EEEEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC----
Confidence 5666665421 1223333333222 123679999999998 456677777777753
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHH
Q 014332 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVC 382 (426)
Q Consensus 304 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~ 382 (426)
...+.+|++||.+..+.+++++ |+. .+.|+.++.++..+++...+...++. .+.....++..+.| ..+.+.+++
T Consensus 138 -~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l 212 (340)
T 1sxj_C 138 -TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVL 212 (340)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHT
T ss_pred -CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 4567888999999999999999 885 78999999999999998888544332 22335667777655 333444444
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHH
Q 014332 383 TEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 383 ~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+.+...+...+...||.+++.+++
T Consensus 213 ~~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 213 QSCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHHhcCCcccccccHHHHHHHh
Confidence 433322211112358877776544
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=4.7e-17 Score=179.41 Aligned_cols=203 Identities=23% Similarity=0.333 Sum_probs=145.8
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCC----CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~ 239 (426)
+.+|+|++.+++.+...+... ..|+. |..++||+||||||||++|+++|+.+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 456999999999999998652 22322 22479999999999999999999988 7899999998876
Q ss_pred hhh-----hcchHHH-----HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCC-----
Q 014332 240 QKY-----VGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA----- 304 (426)
Q Consensus 240 ~~~-----~g~~~~~-----v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~----- 304 (426)
... +|..... .+.+....+...++||||||+|.+ +.+++..|+++++...-.+.
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEe
Confidence 531 2211111 133445555667799999999998 78899999988876431111
Q ss_pred -CCCeEEEEEeCC--------------------------CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCC-
Q 014332 305 -RGNIKVLMATNR--------------------------PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN- 356 (426)
Q Consensus 305 -~~~v~vI~atn~--------------------------~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~- 356 (426)
-.+++||+|||. ...+.|+|++ ||+..+.|++|+.+++..|++.++..+.
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 237889999997 2356788887 9999999999999999999998876321
Q ss_pred ------CC---CCccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 014332 357 ------CE---RDIRFELLARLCP--NSTGADIRSVCTEAGMFAI 390 (426)
Q Consensus 357 ------~~---~~v~l~~la~~t~--g~sg~di~~l~~~A~~~A~ 390 (426)
.. .+-.++.|+...- .++.++|+++|+.+...+.
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 11 1122455666544 5677899999998876654
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=2e-16 Score=150.46 Aligned_cols=208 Identities=19% Similarity=0.156 Sum_probs=128.4
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEecchhhhh
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK 241 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l~~~ 241 (426)
.+|++++|.+..++.+.+.+... ...+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 47889999999999998887642 23457899999999999999999999874 68999999876432
Q ss_pred h-----hcchHHH-------HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC------CC
Q 014332 242 Y-----VGEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG------FD 303 (426)
Q Consensus 242 ~-----~g~~~~~-------v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~------~~ 303 (426)
. .|..... ....|..+ .+++|||||+|.+ +...|..++++++...- ..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 1 1110000 01122222 3469999999999 67788888888876320 01
Q ss_pred CCCCeEEEEEeCCC-------CCCCccccCCCCcce-EEEecCCCH--HHHHHHHHHHHhc----CCCCC--CccH---H
Q 014332 304 ARGNIKVLMATNRP-------DTLDPALLRPGRLDR-KVEFGLPDL--ESRTQIFKIHTRT----MNCER--DIRF---E 364 (426)
Q Consensus 304 ~~~~v~vI~atn~~-------~~ld~al~r~gRf~~-~i~~~~P~~--~er~~Il~~~l~~----~~~~~--~v~l---~ 364 (426)
...++.+|+|||.+ ..+.++|.+ ||.. .+.+|+.+. ++...+++.+++. .+... .++. .
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 13468899999984 357788888 8853 455554433 3444455444432 33211 2333 3
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHH
Q 014332 365 LLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDF 402 (426)
Q Consensus 365 ~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~ 402 (426)
.+....-..+.+++.++++.+...+ ....|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 3433332335678889988887655 3455766655
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.67 E-value=4.4e-17 Score=172.44 Aligned_cols=226 Identities=19% Similarity=0.170 Sum_probs=145.7
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEe----cchhhhhhh-
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI----GSELVQKYV- 243 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~----~~~l~~~~~- 243 (426)
.|.|++.+++.+.-++... .+..+....+....++||+||||||||++|+++|+.++..++... +..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4778887766653332210 000000011233448999999999999999999999876654421 122211111
Q ss_pred ----cchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEE
Q 014332 244 ----GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVL 311 (426)
Q Consensus 244 ----g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~------~~--~~~~~v~vI 311 (426)
|.... ....+..| ..+|+||||||.+ +...+..|++++++.. |. ..+.++.||
T Consensus 374 ~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYL-EAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSE-EECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred ccccccccc-cCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11000 00122233 2359999999998 6678888888887532 11 123578899
Q ss_pred EEeCCCC-------------CCCccccCCCCcce-EEEecCCCHHHHHHHHHHHHhcCCC-------C------------
Q 014332 312 MATNRPD-------------TLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMNC-------E------------ 358 (426)
Q Consensus 312 ~atn~~~-------------~ld~al~r~gRf~~-~i~~~~P~~~er~~Il~~~l~~~~~-------~------------ 358 (426)
+|||++. .+++++++ |||. .+..+.|+.+ ...|.+..+..... .
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999886 89999999 9985 5555667777 77777776653220 0
Q ss_pred -------CCccHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 014332 359 -------RDIRFELLARL--------------CPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 359 -------~~v~l~~la~~--------------t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~ 414 (426)
.+...+.|... ..+.|.+.+.++++.|...|..+++..|+.+|+.+|++-+..+..
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~ 592 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLE 592 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHH
Confidence 11112333333 346788999999999999999999999999999999987765543
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.67 E-value=1.4e-16 Score=155.11 Aligned_cols=204 Identities=18% Similarity=0.271 Sum_probs=132.4
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh---
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY--- 242 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~--- 242 (426)
+|+|.+..++.+.+.+... ...+.+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 5889999999999888652 2456789999999999999999999965 6789999998764321
Q ss_pred --hcch----H---HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC------CCCCC
Q 014332 243 --VGEG----A---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARGN 307 (426)
Q Consensus 243 --~g~~----~---~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~------~~~~~ 307 (426)
.|.. . ......|..+. .++|||||||.+ ....|..++.+++...-. ....+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 1110 0 01122454543 359999999999 677888888888764210 11346
Q ss_pred eEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHH----HHHHHHHHHhcC----CCC-CCcc---HHHHHH
Q 014332 308 IKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLES----RTQIFKIHTRTM----NCE-RDIR---FELLAR 368 (426)
Q Consensus 308 v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~e----r~~Il~~~l~~~----~~~-~~v~---l~~la~ 368 (426)
+.||+|||.. ..+++.|.. ||. .+.+..|+..+ ...+++.++... +.. ..++ +..+..
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8999999985 345666666 764 44444454444 444666555432 211 1233 344555
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 014332 369 LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFL 403 (426)
Q Consensus 369 ~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~ 403 (426)
..-.-+.+++.+++..|...+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 441236688999988887654 34456666553
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.61 E-value=3.9e-16 Score=135.01 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=87.9
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHH
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 248 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~ 248 (426)
+++|.+++++++++.+... ...+.+|||+||||||||++|+++++.+. +|+.++++.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 4889999999999988642 13467899999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 249 ~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
...+|..+. +++|||||+|.+ +...|..++++++... ..++.+|+|||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 345566554 359999999999 6778888888888753 4568899999865
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.60 E-value=1.4e-15 Score=131.73 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=86.3
Q ss_pred cccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcc
Q 014332 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 245 (426)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~ 245 (426)
+++|.+..++.+.+.+... ...+.+|||+||||||||++|+++++.+ +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5889999999999888641 2456789999999999999999999986 77999 999877554
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 246 ~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
......|..+.. ++|||||+|.+ +...|..+++++.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 223345665543 49999999999 67888888888732 34567899999974
No 80
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.59 E-value=2.8e-15 Score=118.79 Aligned_cols=87 Identities=71% Similarity=1.194 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCCCCC
Q 014332 340 DLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSAT 419 (426)
Q Consensus 340 ~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~~~~ 419 (426)
|.++|.+||+.|++++++..++|++.||..|+||||+||.++|++|++.|+++....|+.+||..|++++..+.++.+..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~ 81 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSST 81 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC--------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccch
Confidence 56799999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCC
Q 014332 420 PKYMVYN 426 (426)
Q Consensus 420 ~~~~~~~ 426 (426)
+.|.-||
T Consensus 82 ~~y~~w~ 88 (88)
T 3vlf_B 82 SRYMQYN 88 (88)
T ss_dssp -------
T ss_pred hHHhccC
Confidence 9999887
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.59 E-value=4.1e-15 Score=157.96 Aligned_cols=221 Identities=22% Similarity=0.312 Sum_probs=146.2
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---EEEEecc
Q 014332 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGS 236 (426)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~---~i~v~~~ 236 (426)
...++..|++++|++.+++.+...+.. ..+++|+||||||||++|+++|..+... .+.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 456788999999999999999888864 3689999999999999999999987432 2222111
Q ss_pred hhhh--h---hh--cch-------------------------------------------------HHHHHHHHHH----
Q 014332 237 ELVQ--K---YV--GEG-------------------------------------------------ARMVRELFQM---- 256 (426)
Q Consensus 237 ~l~~--~---~~--g~~-------------------------------------------------~~~v~~lf~~---- 256 (426)
.... . ++ +.. ......+|..
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 1100 0 00 000 0001112210
Q ss_pred -------------------HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcC----------------
Q 014332 257 -------------------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG---------------- 301 (426)
Q Consensus 257 -------------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~---------------- 301 (426)
.....+.+|||||++.+ ++..+..|+++|+.-.-
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 01123459999999998 68889999999885321
Q ss_pred CCCCCCeEEEEEeCCC--CCCCccccCCCCcc---eEEEecC--C-CHHHHHHHHHHHHhcCC---CCCCcc---HHHHH
Q 014332 302 FDARGNIKVLMATNRP--DTLDPALLRPGRLD---RKVEFGL--P-DLESRTQIFKIHTRTMN---CERDIR---FELLA 367 (426)
Q Consensus 302 ~~~~~~v~vI~atn~~--~~ld~al~r~gRf~---~~i~~~~--P-~~~er~~Il~~~l~~~~---~~~~v~---l~~la 367 (426)
...+.++.||+|||+. ..++++|++ ||. ..+.|+. + +.+....+++...+... ....++ +..|.
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li 324 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIV 324 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHH
Confidence 0112478899999986 679999999 986 4566554 2 34556666654443221 111232 33333
Q ss_pred H---hCCCC------cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 368 R---LCPNS------TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 368 ~---~t~g~------sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
. +..|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3 22452 68999999999999998889999999999999864
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=1.3e-13 Score=138.36 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=150.7
Q ss_pred ccccccCcHHHHHHHHHHH-hcCccChhHHHhhCC-CCCCcceE--ecCCCChHHHHHHHHHHhc---------CCcEEE
Q 014332 166 TYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGI-DPPKGVLC--YGPPGTGKTLLARAVANRT---------DACFIR 232 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~-~~~~~vLL--~GppGtGKT~laralA~~l---------~~~~i~ 232 (426)
..+.++|.+..++.|.+++ ..... +. ..+..++| +||||+|||++++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3467999999999999988 53111 11 24567999 9999999999999999876 456788
Q ss_pred Eecchhh------hhh---h-------cc-hHHHHHHHHHHHH-cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHH
Q 014332 233 VIGSELV------QKY---V-------GE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294 (426)
Q Consensus 233 v~~~~l~------~~~---~-------g~-~~~~v~~lf~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 294 (426)
+++.... ... . +. .......+..... ...|.+|+|||+|.+...+. .+.+....+..
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHH
Confidence 8864321 110 1 11 1122333333322 35688999999999853210 12344444555
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCC---CCC---ccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCC---CCccHHH
Q 014332 295 IVNQLDGFDARGNIKVLMATNRPD---TLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE---RDIRFEL 365 (426)
Q Consensus 295 ll~~l~~~~~~~~v~vI~atn~~~---~ld---~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~---~~v~l~~ 365 (426)
++..+..-....++.+|++|+.++ .++ +.+.+ ++...+.+++++.++..+++..++...... .+-....
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 554432000026788998887664 334 55666 666669999999999999998876532221 1223567
Q ss_pred HHHhCC------CCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 014332 366 LARLCP------NSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKV 409 (426)
Q Consensus 366 la~~t~------g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v 409 (426)
++..+. | +++.+..+|..|...|..++...++.+++..++...
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 778887 6 566888999999888888788889999998888664
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.53 E-value=6.5e-15 Score=169.18 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=113.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccC----------hhHHHh------hCCC----------CCCc--ceEecCCCC
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLH----------PEKFVK------LGID----------PPKG--VLCYGPPGT 213 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~----------~~~~~~------~g~~----------~~~~--vLL~GppGt 213 (426)
.+.++|++++|++++++.+.+.+.+|+.+ ++.|.. .|+. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 45599999999999999999999998844 677776 4443 4555 999999999
Q ss_pred hHHHHHHHHHHhc---CCcEEEEecchhh------------hhhhcc----hHHHHHHHHHHHHcCCCEEEEEeCCCccc
Q 014332 214 GKTLLARAVANRT---DACFIRVIGSELV------------QKYVGE----GARMVRELFQMARSKKACIVFFDEVDAIG 274 (426)
Q Consensus 214 GKT~laralA~~l---~~~~i~v~~~~l~------------~~~~g~----~~~~v~~lf~~a~~~~p~Il~iDEiD~l~ 274 (426)
|||+||++++.+. +.+.+.++..+.. ++++++ +++.++.+|..|+...||+||+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5566666665543 566777 89999999999999999999999999999
Q ss_pred CCccC---CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 275 GARFD---DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 275 ~~r~~---~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+.+.. .+.....-..+.+.++|.++++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 98532 22111234455688999999987777888777 77764
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.52 E-value=2.3e-13 Score=134.02 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=121.5
Q ss_pred cCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc---------------------
Q 014332 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------------------- 229 (426)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--------------------- 229 (426)
.-+++..+.+...+.. -+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 5 pw~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3457777888887764 2456679999999999999999999987542
Q ss_pred ---EEEEecchhhhhhhcchHHHHHHHHHHHHc----CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC
Q 014332 230 ---FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 302 (426)
Q Consensus 230 ---~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~ 302 (426)
++.+++.+- ....+...++.+++.+.. ..+.|++|||+|.+ +...+..|+..++
T Consensus 73 ~~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lE----- 133 (334)
T 1a5t_A 73 HPDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLE----- 133 (334)
T ss_dssp CTTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHT-----
T ss_pred CCCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhc-----
Confidence 333332100 001233456777776643 34679999999999 4555555555554
Q ss_pred CCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHH
Q 014332 303 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVC 382 (426)
Q Consensus 303 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~ 382 (426)
.+..++++|++||.++.+.+++++ |+ ..+.|+.|+.++..++++... .++ +..+..++..+.| +.+.+.+++
T Consensus 134 ep~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 134 EPPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp SCCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTT
T ss_pred CCCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHh
Confidence 246688999999999999999999 88 579999999999999888765 222 2345667788766 444444444
Q ss_pred H
Q 014332 383 T 383 (426)
Q Consensus 383 ~ 383 (426)
+
T Consensus 206 ~ 206 (334)
T 1a5t_A 206 Q 206 (334)
T ss_dssp S
T ss_pred c
Confidence 3
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=108.74 Aligned_cols=76 Identities=47% Similarity=0.777 Sum_probs=72.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 337 GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 337 ~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
|+|+.++|.+||+.|++++.+..++++..||..|+||||+||.++|++|++.|++++...|+.+||..|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999888889999999999999999999999999999999999999999999999998754
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=109.05 Aligned_cols=76 Identities=47% Similarity=0.787 Sum_probs=72.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 337 GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 337 ~~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
.+||.++|.+||+.+++++.+..++|++.||..|+||||+||.++|++|++.|+++....|+.+||..|++++.++
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 5799999999999999999988899999999999999999999999999999999999999999999999998764
No 87
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=5.9e-13 Score=129.52 Aligned_cols=142 Identities=12% Similarity=0.169 Sum_probs=109.0
Q ss_pred CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc------CCcEEEEecchhhhhhhcc
Q 014332 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSELVQKYVGE 245 (426)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l------~~~~i~v~~~~l~~~~~g~ 245 (426)
|++++++.|+..+.. | + +.++|||||||+|||++|+++|+.+ +..++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677888889888875 2 2 4589999999999999999999864 446777765420 12
Q ss_pred hHHHHHHHHHHHHcC----CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 014332 246 GARMVRELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (426)
Q Consensus 246 ~~~~v~~lf~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld 321 (426)
+...++.+++.+... ...|+||||+|.+ +...++.|+..+++ ++.++++|++|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 344577777777543 2479999999999 56667777777663 567889999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHH
Q 014332 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (426)
Q Consensus 322 ~al~r~gRf~~~i~~~~P~~~er~~Il~~~l 352 (426)
+++++ | .+.|++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 8 88999999999999888776
No 88
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.41 E-value=1.1e-12 Score=107.69 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=58.7
Q ss_pred hcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCCcccccccc
Q 014332 82 EEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (426)
+++|+.||+|.++++++ +++|+.+++.+|+|++.+.++..+++||++|+++..+|.+...||+++||.++.|.++
T Consensus 34 ~~~P~~Vg~v~e~~d~~----~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 34 RSPPLLVGVVSDILEDG----RVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp HSCCEEEEEEEEECTTS----CEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred hCCCceEEEEEEEecCC----EEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 57899999999999864 5999999999999999999999999999999999999999999999999999998765
No 89
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.38 E-value=1.5e-12 Score=130.79 Aligned_cols=208 Identities=19% Similarity=0.274 Sum_probs=133.3
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh-
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY- 242 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~- 242 (426)
+..++|.+..++++.+.+.. + ......++|+|++||||+++|++++..+ +.+|+.++|+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 45688888888888887764 1 2345679999999999999999999876 4789999998764321
Q ss_pred ----hc--------chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhc-----CC-CC
Q 014332 243 ----VG--------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GF-DA 304 (426)
Q Consensus 243 ----~g--------~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~-----~~-~~ 304 (426)
.| .... ....|+.|.. ++||||||+.+ +.+.|..|+++++... +. ..
T Consensus 205 ~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 11 1100 1124555443 49999999999 7899999999998732 11 11
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHH----HHHHHHHHhc----CCCC-CCccHHHHHH
Q 014332 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESR----TQIFKIHTRT----MNCE-RDIRFELLAR 368 (426)
Q Consensus 305 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~~~~P~~~er----~~Il~~~l~~----~~~~-~~v~l~~la~ 368 (426)
..++.||+|||.. ..+.+.|.. |+. .+.+..|...+| ..+++.++.. .+.. ..++.+.+..
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2368899999974 233344433 442 344555655554 3344544432 3322 2244444433
Q ss_pred hC-CCC--cHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 369 LC-PNS--TGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 369 ~t-~g~--sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
+. ..+ +-+++++++++|...+ ....|+.+|+-..+
T Consensus 347 l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 347 LLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 22 233 4478999999888765 45679999986544
No 90
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=4.2e-12 Score=113.31 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=85.5
Q ss_pred cCCCCccccccC----cHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEE
Q 014332 161 EKPDVTYNDVGG----CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIR 232 (426)
Q Consensus 161 ~~~~~~~~di~G----~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~ 232 (426)
.+.+.+|+++++ +..+++.+++++.. +.+..+.+++|+||||||||+|++++++.+ |..++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 345678888776 33444444444432 334557889999999999999999999876 667777
Q ss_pred EecchhhhhhhcchHHH-HHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014332 233 VIGSELVQKYVGEGARM-VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (426)
Q Consensus 233 v~~~~l~~~~~g~~~~~-v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (426)
++..++...+....... ...++... ..|.+|+|||++... .++..+..+.++++... ..+..+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii 137 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTI 137 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEE
T ss_pred EEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEE
Confidence 88877765432211100 00122222 246699999998642 15667777878887653 1345688
Q ss_pred EEeCCCC
Q 014332 312 MATNRPD 318 (426)
Q Consensus 312 ~atn~~~ 318 (426)
++||.+.
T Consensus 138 ~tsn~~~ 144 (180)
T 3ec2_A 138 ITTNYSL 144 (180)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 8888753
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.32 E-value=3e-11 Score=144.49 Aligned_cols=140 Identities=21% Similarity=0.364 Sum_probs=99.9
Q ss_pred CCCcceEecCCCChHHHHHHH-HHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHH---------------cCCCEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARA-VANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR---------------SKKACI 264 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~lara-lA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~---------------~~~p~I 264 (426)
.++++||+||||||||++|+. +++..+..++.++.+...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 468999999999999999955 4544577888888765532 233344444321 123479
Q ss_pred EEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC-CCC-------CCeEEEEEeCCCC-----CCCccccCCCCcc
Q 014332 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DAR-------GNIKVLMATNRPD-----TLDPALLRPGRLD 331 (426)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~-~~~-------~~v~vI~atn~~~-----~ld~al~r~gRf~ 331 (426)
|||||++.....+ .+.......+.++++. .++ +.. .++.+|+|+|++. .++++++| ||
T Consensus 1340 lFiDEinmp~~d~-----yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDK-----YGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCS-----SSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEecccccccccc-----cCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 9999999754332 2234566677777754 222 111 3689999999994 89999999 99
Q ss_pred eEEEecCCCHHHHHHHHHHHHhcC
Q 014332 332 RKVEFGLPDLESRTQIFKIHTRTM 355 (426)
Q Consensus 332 ~~i~~~~P~~~er~~Il~~~l~~~ 355 (426)
..+.++.|+.+++..|+..+++.+
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999888643
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.29 E-value=4.1e-12 Score=99.31 Aligned_cols=75 Identities=36% Similarity=0.504 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhcc
Q 014332 340 DLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQ 414 (426)
Q Consensus 340 ~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~ 414 (426)
|.++|.+||+.|++++++..++++..||..|+||||+||.++|++|++.|+++....|+.+||..|++++.++..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 678999999999999998888999999999999999999999999999999999899999999999999977654
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.23 E-value=1.9e-10 Score=116.47 Aligned_cols=221 Identities=16% Similarity=0.046 Sum_probs=130.6
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHH-HHhcCCcEEEEecc-----hhhhhhh
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV-ANRTDACFIRVIGS-----ELVQKYV 243 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laral-A~~l~~~~i~v~~~-----~l~~~~~ 243 (426)
|.|++.++..|.-++...-.. +...-++||.|+||| ||++|+++ ++-+.... .+.+. .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 667766655554444321000 112337999999999 99999999 66554332 22211 1111000
Q ss_pred cchHHHH-HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHh----cCCCCCCCeEEEEEeCCCC
Q 014332 244 GEGARMV-RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL----DGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 244 g~~~~~v-~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l----~~~~~~~~v~vI~atn~~~ 318 (426)
+.+...+ .-.+..|.. .++|+|||+.+ +...|..|++.+++- .|..-+.++.||+|+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 0000000 011223322 39999999998 788999999999873 2222245789999999865
Q ss_pred -----------CCCccccCCCCcceEEE-ecCCCHHHH---------HHHHHH---HHhcCCCCCCcc---HHHHH----
Q 014332 319 -----------TLDPALLRPGRLDRKVE-FGLPDLESR---------TQIFKI---HTRTMNCERDIR---FELLA---- 367 (426)
Q Consensus 319 -----------~ld~al~r~gRf~~~i~-~~~P~~~er---------~~Il~~---~l~~~~~~~~v~---l~~la---- 367 (426)
.|++++++ |||..+. +..|+.+.- .+.++. +.+...+...++ .+.+.
T Consensus 351 ~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp --CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred ccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 78889999 9987543 444554321 112222 222011111111 11111
Q ss_pred --H-----------hCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhhccCC
Q 014332 368 --R-----------LCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKF 416 (426)
Q Consensus 368 --~-----------~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~~~~~ 416 (426)
+ ..-|.|++.+.++++.|...|..+++..|+.+|+..|++-+..+....
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~ 490 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETA 490 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHh
Confidence 0 245789999999999999999999999999999999998877665544
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.19 E-value=1.6e-09 Score=105.64 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=119.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh--
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 239 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~-- 239 (426)
.|......++|.+..++.|.+++.. | +.++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~ 68 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAE 68 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccc
Confidence 3444556799999999999998753 2 5899999999999999999999876 6666654321
Q ss_pred ----------hhh---hc-------------------------chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCC
Q 014332 240 ----------QKY---VG-------------------------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (426)
Q Consensus 240 ----------~~~---~g-------------------------~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (426)
... .+ .....+..+...+....|.+|+|||++.+....
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~---- 144 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG---- 144 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----
Confidence 000 00 011122222222332238899999999984210
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHH
Q 014332 282 VGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (426)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---------~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l 352 (426)
...+......+..+++.. .++.+|+++.... .....+. ||+...+.+++.+.++..+++...+
T Consensus 145 ~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 145 SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHH
Confidence 001234444444444431 4677777775421 1122232 3666789999999999999998877
Q ss_pred hcCCCC-CCccHHHHHHhCCCCcHHHHHHHHH
Q 014332 353 RTMNCE-RDIRFELLARLCPNSTGADIRSVCT 383 (426)
Q Consensus 353 ~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~ 383 (426)
...+.. .......+...+.|+.. -+..++.
T Consensus 217 ~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 217 REVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp HTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 654432 22345677788878543 5555544
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=1.4e-09 Score=106.27 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=119.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh--
Q 014332 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 239 (426)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~-- 239 (426)
.|......++|.++.++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 344556679999999999888 531 4799999999999999999999987777788765420
Q ss_pred -----hhh-------hc--------------------------c------hHHHHHHHHHHHHcC--CCEEEEEeCCCcc
Q 014332 240 -----QKY-------VG--------------------------E------GARMVRELFQMARSK--KACIVFFDEVDAI 273 (426)
Q Consensus 240 -----~~~-------~g--------------------------~------~~~~v~~lf~~a~~~--~p~Il~iDEiD~l 273 (426)
..+ +. . ....+..+++..... .|.+|+|||++.+
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 000 00 0 011233444444332 3889999999998
Q ss_pred cCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---------CCCccccCCCCcceEEEecCCCHHHH
Q 014332 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---------TLDPALLRPGRLDRKVEFGLPDLESR 344 (426)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~---------~ld~al~r~gRf~~~i~~~~P~~~er 344 (426)
.... +......+..+.+. ..++.+|++++... .....+. ||+...+.+++.+.++.
T Consensus 150 ~~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~ 214 (357)
T 2fna_A 150 VKLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEA 214 (357)
T ss_dssp GGCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHH
T ss_pred hccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHH
Confidence 4310 11223333344333 13677788776532 1112232 36667899999999999
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHH
Q 014332 345 TQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTE 384 (426)
Q Consensus 345 ~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~ 384 (426)
.+++...+...+...+ +...+...+.|+.. -+..++..
T Consensus 215 ~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 215 IEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 9999887754333322 23778888888644 55555543
No 96
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.17 E-value=5.3e-12 Score=98.47 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhh
Q 014332 342 ESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKG 412 (426)
Q Consensus 342 ~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~v~~~ 412 (426)
++|.+||+.|++++++..++|++.||..|+||||+||.++|++|++.|++++...|+.+||..|++++..+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~ 71 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKT 71 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC-
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcC
Confidence 47899999999999888889999999999999999999999999999999999999999999999988543
No 97
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.12 E-value=3e-10 Score=113.24 Aligned_cols=195 Identities=17% Similarity=0.242 Sum_probs=119.2
Q ss_pred ccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcCCc--EEEEecchhhhhh---
Q 014332 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSELVQKY--- 242 (426)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~~~--~i~v~~~~l~~~~--- 242 (426)
..++|.+....++.+.+... ......++++|++||||+++|++++...+.. |+.++|..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 45888888888887777531 1345569999999999999999999877543 9999998763321
Q ss_pred --hcchH-------HHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCC--C----CCCC
Q 014332 243 --VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--D----ARGN 307 (426)
Q Consensus 243 --~g~~~-------~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~--~----~~~~ 307 (426)
.|... +.-...|+.|.. .+||||||+.+ +...|..|+++++...-. . ...+
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred HhcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 11100 000124555533 38999999999 889999999999864311 1 1236
Q ss_pred eEEEEEeCCC-------CCCCccccCCCCcce-EEEecCCCH--HHHHHHHHHHHhcC----CCC-CCccHHHHHHhC-C
Q 014332 308 IKVLMATNRP-------DTLDPALLRPGRLDR-KVEFGLPDL--ESRTQIFKIHTRTM----NCE-RDIRFELLARLC-P 371 (426)
Q Consensus 308 v~vI~atn~~-------~~ld~al~r~gRf~~-~i~~~~P~~--~er~~Il~~~l~~~----~~~-~~v~l~~la~~t-~ 371 (426)
+.+|+|||.. ..+.+.|.. |+.. .|.+|+... ++...+++.++... +.. ..++.+.+..+. .
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 8899999963 233344444 4431 344544333 34445555555432 222 224444443322 1
Q ss_pred CC--cHHHHHHHHHHHHHHH
Q 014332 372 NS--TGADIRSVCTEAGMFA 389 (426)
Q Consensus 372 g~--sg~di~~l~~~A~~~A 389 (426)
.+ +-++++++++.|...+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 22 4478888888876543
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=1.7e-10 Score=104.66 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCccccccCcHH----HHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 163 PDVTYNDVGGCKE----QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 163 ~~~~~~di~G~~~----~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
.+.+|+++.+.+. +++.+..++...- ....+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE---------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC---------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh---------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3567888887553 3344444443210 00134799999999999999999999987 678888888
Q ss_pred chhhhhhhcchH-HHHHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 236 SELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 236 ~~l~~~~~g~~~-~~v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
+++......... ..+..++..... +.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 877654322110 001223333332 349999999775
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=1.8e-10 Score=100.09 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r 277 (426)
+...++|+||+|+|||+|++++++.+ |...+.+++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 46789999999999999999999977 667888888776543 112346799999999872
Q ss_pred cCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCC--ccccCCCCcceEEEe
Q 014332 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLD--PALLRPGRLDRKVEF 336 (426)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~ld--~al~r~gRf~~~i~~ 336 (426)
...+..+.++++.+.. .+..++|+|||. |..+. +.+.+ |+..-..+
T Consensus 97 --------~~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 --------NEEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp --------SHHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred --------hHHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 2236777788776541 223335667774 44333 67777 76544333
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.00 E-value=9.8e-11 Score=113.65 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=73.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCC--cEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~--~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
|+.++..++|+||||||||+||.++|...+. .|+.....+.++.+....+..+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 4556667899999999999999999987543 466553344444444455666666666666554 999999999965
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccc
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL 324 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al 324 (426)
...+.+..+ ...+.+.+++..+.++....++.+|+++| +...++++
T Consensus 197 ~~~~~s~~G--~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSG--GISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccc--hHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 443211111 11233444444444333345677888888 55555543
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.93 E-value=3.4e-08 Score=118.61 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=114.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (426)
..++++.||+|||||.+++++|+.+|.+++.++|++-+. ...+..+|..+.... +++++|||+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 468999999999999999999999999999999987543 233455665554433 59999999998
Q ss_pred CCCChHHHHHHHHHHHHhc-------------C--CCCCCCeEEEEEeCC----CCCCCccccCCCCcceEEEecCCCHH
Q 014332 282 VGGDNEVQRTMLEIVNQLD-------------G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (426)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l~-------------~--~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~~ 342 (426)
+.++...+.+.+..+. | +....++.|++|.|. ...|++++++ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 7788887755544321 1 122346778888884 4679999998 88 78999999998
Q ss_pred HHHHHHHHHHhcCCCCCCc-----cH-HHHHHhCC-----CCcHHHHHHHHHHHHHHH
Q 014332 343 SRTQIFKIHTRTMNCERDI-----RF-ELLARLCP-----NSTGADIRSVCTEAGMFA 389 (426)
Q Consensus 343 er~~Il~~~l~~~~~~~~v-----~l-~~la~~t~-----g~sg~di~~l~~~A~~~A 389 (426)
...+|+-... ........ .+ ..+..... .|.-+.++.++..|+...
T Consensus 784 ~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 784 TIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 8887753322 11111111 11 11222222 367789999988887643
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.91 E-value=1e-09 Score=106.71 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCccccccCcH----HHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014332 164 DVTYNDVGGCK----EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (426)
Q Consensus 164 ~~~~~di~G~~----~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~ 235 (426)
+.+|+++.+.. .++..+.+++.. ++-.++.+++|+||||||||+||+++|+++ +.+++.+.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ----------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH----------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh----------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 46788877643 233344444432 111136799999999999999999999865 478888888
Q ss_pred chhhhhhhcch-HHHHHHHHHHHHcCCCEEEEEeCCCcc
Q 014332 236 SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAI 273 (426)
Q Consensus 236 ~~l~~~~~g~~-~~~v~~lf~~a~~~~p~Il~iDEiD~l 273 (426)
++++....... ...+..++.... .+.+|||||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 87766543321 111122222222 2349999999765
No 103
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=1.2e-08 Score=79.47 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=58.2
Q ss_pred hcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCC
Q 014332 82 EEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPP 148 (426)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~ 148 (426)
+++|+.||++.+++++ ++++|+.+++++|+|++.+.++...++||++|+++..++.+...||.
T Consensus 15 ~~~P~~vG~v~e~~dd----~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 15 RVPPLIVGTVVDKVGE----RKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HSCCEEEEEEEEEEET----TEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred cCCCceEEEEEEEcCC----CEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 5789999999999986 46999999999999999999999999999999999999999998874
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.74 E-value=7e-09 Score=94.43 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=80.3
Q ss_pred CcceEecCCCChHHHHHHHHHHh--------cC-CcEEEEecchhhhhhh-------------cc--hHHHHHHHHHHHH
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR--------TD-ACFIRVIGSELVQKYV-------------GE--GARMVRELFQMAR 258 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~--------l~-~~~i~v~~~~l~~~~~-------------g~--~~~~v~~lf~~a~ 258 (426)
...|++|+||||||++|.+.+.. .| .+++..++.++.-... ++ ....+..++..+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46799999999999999886433 34 6666666665543221 11 1122333221122
Q ss_pred cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 014332 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 338 (426)
..++||+|||++.+.+.+.+.. . . . +++..+.. .....+-+|.+|+.+..|+.++++ |++..+.++.
T Consensus 86 -~~~~vliIDEAq~l~~~~~~~~-e-~---~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 86 -NIGSIVIVDEAQDVWPARSAGS-K-I---P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp -GTTCEEEETTGGGTSBCCCTTC-C-C---C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred -cCceEEEEEChhhhccCccccc-h-h---H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 3456999999999976542211 0 1 1 23333332 233456788999999999999998 9999999987
Q ss_pred CCHH
Q 014332 339 PDLE 342 (426)
Q Consensus 339 P~~~ 342 (426)
|...
T Consensus 153 ~~~~ 156 (199)
T 2r2a_A 153 NKMG 156 (199)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6543
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.73 E-value=1.2e-07 Score=93.04 Aligned_cols=176 Identities=11% Similarity=0.055 Sum_probs=113.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CC-cEEEEecchhhhhhhcchHHHHHHHHHHH----HcCCCEEEEEeCCCc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DA-CFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 272 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~-~~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~~~~p~Il~iDEiD~ 272 (426)
.+..+|||||+|.||++.++.+++.+ +. ++..+... + ...++.+++.+ ......|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45689999999999999999999865 21 22222111 1 11233344333 235567999999998
Q ss_pred -ccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC------CCCccccCCCCcceEEEecCCCHHHHH
Q 014332 273 -IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD------TLDPALLRPGRLDRKVEFGLPDLESRT 345 (426)
Q Consensus 273 -l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~------~ld~al~r~gRf~~~i~~~~P~~~er~ 345 (426)
+ +...+..|+..++. ++.++++|.+++.++ .+.+++.+ |. ..++|..++..+..
T Consensus 88 kl-----------~~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GP-----------NAAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CC-----------CTTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CC-----------ChHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 7 23345556555543 345666776666543 35567777 66 58899999999999
Q ss_pred HHHHHHHhcCCCC-CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 014332 346 QIFKIHTRTMNCE-RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNK 408 (426)
Q Consensus 346 ~Il~~~l~~~~~~-~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~~~ 408 (426)
..++..++..++. ..-.+..++..+.| +.+++.+.+.....++ +...||.+++...+..
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 9999888877654 22335667777755 4455555555554432 3457999988777654
No 106
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.70 E-value=8e-09 Score=103.02 Aligned_cols=120 Identities=21% Similarity=0.221 Sum_probs=77.7
Q ss_pred hCCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccC-
Q 014332 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG- 275 (426)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~- 275 (426)
++++++..++|+||||+||||++++++..++..++.+..+.-. ....+..+| ...++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHHH
Confidence 4788888999999999999999999999887776554332210 011111122 234789999999875
Q ss_pred CccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 014332 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~ 338 (426)
.+.... +. ... ....+.+.++| .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~~--~~-~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPS--GQ-GIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCC--CS-HHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhccc--cC-cch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 221111 11 111 22233444443 45688899999999 89999999987655543
No 107
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.67 E-value=4.4e-08 Score=114.30 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=83.8
Q ss_pred ChhHHHhhC---CCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh----hhhhc------------chH
Q 014332 190 HPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVG------------EGA 247 (426)
Q Consensus 190 ~~~~~~~~g---~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~----~~~~g------------~~~ 247 (426)
.+++-..+| +.++++++|+||||||||+||.+++.+. |.....++..+.+ ....| ..+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E 1491 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1491 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH
Confidence 444555555 7889999999999999999999998865 4556666655432 12222 345
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcccCCcc---CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014332 248 RMVRELFQMARSKKACIVFFDEVDAIGGARF---DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (426)
Q Consensus 248 ~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~---~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~at 314 (426)
..++.++..++..+|++||||+++.+.+.+. +.+.+......+.+.++|.++.++....++.||++-
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 6777788888889999999999999887531 111111112345566677776666556676555543
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.60 E-value=3.4e-08 Score=89.67 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
+++..+++|||||||||||++|.++|+.+....
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 344456899999999999999999999986544
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.55 E-value=4e-07 Score=110.17 Aligned_cols=140 Identities=23% Similarity=0.292 Sum_probs=95.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc-CCcEEEEecchhhhhhhcchHHHHHHHHHHH----H------------cCCCE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELVQKYVGEGARMVRELFQMA----R------------SKKAC 263 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l-~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a----~------------~~~p~ 263 (426)
..+++||+||||||||++++.....+ +.+++.++++.-.+ +..+...++.. + .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 46789999999999998876655544 66677787765432 23333333321 0 12236
Q ss_pred EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCC-------CCCCeEEEEEeCCC-----CCCCccccCCCCcc
Q 014332 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-------ARGNIKVLMATNRP-----DTLDPALLRPGRLD 331 (426)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~-------~~~~v~vI~atn~~-----~~ld~al~r~gRf~ 331 (426)
|+||||++.-... ..|.......|.++++...-++ .-.++.+|+|+|.| ..++++++| ||.
T Consensus 1377 VlFiDDiNmp~~D-----~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1377 VVFCDEINLPSTD-----KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEEETTTTCCCCC-----TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEEecccCCCCcc-----ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 9999999864321 2234456677777777532111 12468899999987 469999999 884
Q ss_pred eEEEecCCCHHHHHHHHHHHHhc
Q 014332 332 RKVEFGLPDLESRTQIFKIHTRT 354 (426)
Q Consensus 332 ~~i~~~~P~~~er~~Il~~~l~~ 354 (426)
.+.++.|+.+....|+..++..
T Consensus 1450 -vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 6999999999999998876553
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.53 E-value=2.6e-07 Score=94.47 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=97.6
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCCCccccCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRPG 328 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-------------~~~ld~al~r~g 328 (426)
|.|+||||+|.+ +.+.+..|+..+++ +..++ +|++||. +..+++.+++
T Consensus 296 ~~VliIDEa~~l-----------~~~a~~aLlk~lEe-----~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHML-----------DIECFTYLHRALES-----SIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGC-----------BHHHHHHHHHHTTS-----TTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHhhc-----cCCCE-EEEecCCccccccccccccccccCChhHHh--
Confidence 359999999999 56667777655543 33444 5555533 6789999999
Q ss_pred CcceEEEecCCCHHHHHHHHHHHHhcCCCC-CCccHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 014332 329 RLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC-PNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAV 406 (426)
Q Consensus 329 Rf~~~i~~~~P~~~er~~Il~~~l~~~~~~-~~v~l~~la~~t-~g~sg~di~~l~~~A~~~A~~~~~~~It~ed~~~A~ 406 (426)
||.. +.|++|+.++..++++..+...+.. .+-.+..++..+ .| +++....+++.|...|..+++..||.+|+.+|+
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEIS 434 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHH
Confidence 9976 6999999999999999887644433 222356677776 55 788888999999999999999999999999998
Q ss_pred HHH
Q 014332 407 NKV 409 (426)
Q Consensus 407 ~~v 409 (426)
.-+
T Consensus 435 ~~~ 437 (456)
T 2c9o_A 435 ELF 437 (456)
T ss_dssp HHS
T ss_pred HHh
Confidence 764
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.44 E-value=1.9e-06 Score=104.50 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=111.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~ 281 (426)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-+.- ..+..+|.-+... .+..++|||+.+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl-------- 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL-------- 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC--------
Confidence 3467899999999999999999999999999999875432 3344555555433 348899999998
Q ss_pred CCCChHHHHHHHHHHHHh-------------c-C--CCCCCCeEEEEEeCC----CCCCCccccCCCCcceEEEecCCCH
Q 014332 282 VGGDNEVQRTMLEIVNQL-------------D-G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDL 341 (426)
Q Consensus 282 ~~~~~~~~~~l~~ll~~l-------------~-~--~~~~~~v~vI~atn~----~~~ld~al~r~gRf~~~i~~~~P~~ 341 (426)
+.++...+.+.+..+ . | +.-..++.|++|.|. ...|+.+|+. || +.+.+..||.
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 788888777655422 1 1 223446778888884 4689999998 88 7899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcc-------HHHHHH------hCCCCcHHHHHHHHHHHHHH
Q 014332 342 ESRTQIFKIHTRTMNCERDIR-------FELLAR------LCPNSTGADIRSVCTEAGMF 388 (426)
Q Consensus 342 ~er~~Il~~~l~~~~~~~~v~-------l~~la~------~t~g~sg~di~~l~~~A~~~ 388 (426)
+...+|+-. ..++...-. +-.+++ .-..|.-+.++.++..|+..
T Consensus 743 ~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 743 EMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 877776532 223321111 111111 11245567888888887753
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.41 E-value=2.6e-07 Score=87.45 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhhhhcchHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~~~g~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~ 280 (426)
+.++++||||||||||++|+++|+.+.. +-.++.+. ..+ .|..+ ....|+++||....-
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~~--~~k~i~l~Ee~~~~~------ 161 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFNDC--VDKMVIWWEEGKMTA------ 161 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGGG--SSCSEEEECSCCEET------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------ccccc--cccEEEEeccccchh------
Confidence 3568999999999999999999997644 22222211 011 12211 222367777766541
Q ss_pred CCCCChHHHHHHHHHHHHhcC--CC-------CCCCeEEEEEeCC-C----------CCCCccccCCCCcceEEEec---
Q 014332 281 GVGGDNEVQRTMLEIVNQLDG--FD-------ARGNIKVLMATNR-P----------DTLDPALLRPGRLDRKVEFG--- 337 (426)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l~~--~~-------~~~~v~vI~atn~-~----------~~ld~al~r~gRf~~~i~~~--- 337 (426)
+.+..+..++. ... ++ ......+|+|||. + +...++|.+ |+ ..+.|+
T Consensus 162 ------d~~~~lr~i~~-G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~ 231 (267)
T 1u0j_A 162 ------KVVESAKAILG-GSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRL 231 (267)
T ss_dssp ------TTHHHHHHHHT-TCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCC
T ss_pred ------HHHHHHHHHhC-CCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcC
Confidence 12233334432 100 11 1145678899986 2 234467887 77 577777
Q ss_pred -----CCCHHHHHHHHH
Q 014332 338 -----LPDLESRTQIFK 349 (426)
Q Consensus 338 -----~P~~~er~~Il~ 349 (426)
..+.++-...|+
T Consensus 232 p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 232 DHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp CTTSCCCCHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHH
Confidence 455666666665
No 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.32 E-value=2.1e-06 Score=76.48 Aligned_cols=122 Identities=17% Similarity=0.218 Sum_probs=67.4
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchh---------------------------------hhhhhcch--HH
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL---------------------------------VQKYVGEG--AR 248 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l---------------------------------~~~~~g~~--~~ 248 (426)
.+.|.||+|+|||||++.++..++..+.-....+. ..++.... ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47899999999999999999987644322111111 11111111 11
Q ss_pred HHHHHHHHH-----HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCC
Q 014332 249 MVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLD 321 (426)
Q Consensus 249 ~v~~lf~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~--~ld 321 (426)
..+-.+..+ ....|.++++||++-... -+...+..+.+++.. .+..+|++++..+ .+-
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~--------ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--------FSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--------GCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCccc--------CCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHH
Confidence 222233332 467788999999764421 256666666666643 2444666664222 222
Q ss_pred ccccCCCCc-ceEEEecCCCHH
Q 014332 322 PALLRPGRL-DRKVEFGLPDLE 342 (426)
Q Consensus 322 ~al~r~gRf-~~~i~~~~P~~~ 342 (426)
..+.+ |- .+.+++...+.+
T Consensus 147 ~~i~~--r~~~~i~~~~~~~r~ 166 (178)
T 1ye8_A 147 KEIRR--LPGAVLIELTPENRD 166 (178)
T ss_dssp HHHHT--CTTCEEEECCTTTTT
T ss_pred HHHHh--cCCcEEEEecCcCHH
Confidence 34444 43 246677665543
No 114
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.23 E-value=2e-06 Score=85.01 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----h------------cchHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----V------------GEGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~----~------------g~~~~~v~~lf~~a~ 258 (426)
|+.+..-++|+||||+|||+|+..++..+ +..+++++........ + ...+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56777789999999999999999999864 5667777765532210 0 112223333333344
Q ss_pred cCCCEEEEEeCCCcccC-CccCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 259 SKKACIVFFDEVDAIGG-ARFDDGVGGD--NEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~-~r~~~~~~~~--~~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
...+.+++||.+..+.+ ...++..+.. ....+.+.+++..+..+....++.||++..
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 57788999999999876 2222211111 123344555555554443455666666543
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.22 E-value=4.1e-06 Score=83.14 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=68.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----hc------------chHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VG------------EGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~----~g------------~~~~~v~~lf~~a~ 258 (426)
|+.++..++|+||||+|||+||..+|... +.++++++...-.... .| ..+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56777889999999999999999998754 5677777765422211 11 11222222333334
Q ss_pred cCCCEEEEEeCCCcccCCccCCCCCCCh---HHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 259 SKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
...+.+|+||.+..+.+.....+..++. ...+.+.+++..+..+....++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5678899999999997532111110110 12234455555554333455677776654
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.21 E-value=1.7e-05 Score=83.33 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=95.9
Q ss_pred cccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHh-------c--CCcEEEEecch
Q 014332 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-------T--DACFIRVIGSE 237 (426)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~-------l--~~~~i~v~~~~ 237 (426)
...++|.+..+++|.+.+... -...+.++|+||+|+|||+||+.+++. + +.-++.+....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345899999999999998531 123457999999999999999999753 2 22333343221
Q ss_pred ---hhhhh------hc----------ch-HHHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHH
Q 014332 238 ---LVQKY------VG----------EG-ARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (426)
Q Consensus 238 ---l~~~~------~g----------~~-~~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (426)
+.... .+ .. ......+...... ..|.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~-------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H-------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H-------HH
Confidence 11111 11 01 1112222222222 36789999999752 1 12
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec---CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCCC
Q 014332 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG---LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (426)
Q Consensus 297 ~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~---~P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g~ 373 (426)
.. + ..+..||+||........ . . ...+.++ ..+.++-.++|..+...-.....-....|++.|.|.
T Consensus 252 ~~---l--~~~~~ilvTsR~~~~~~~-~-~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 252 KA---F--DSQCQILLTTRDKSVTDS-V-M----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp HT---T--CSSCEEEEEESCGGGGTT-C-C----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC
T ss_pred HH---h--cCCCeEEEECCCcHHHHh-c-C----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC
Confidence 22 2 345678888875432211 1 1 2234443 578888899998877531111123457889999886
Q ss_pred cH
Q 014332 374 TG 375 (426)
Q Consensus 374 sg 375 (426)
.-
T Consensus 321 PL 322 (591)
T 1z6t_A 321 PL 322 (591)
T ss_dssp HH
T ss_pred cH
Confidence 44
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.21 E-value=1.3e-06 Score=86.24 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=52.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----hhc------------chHHHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG------------EGARMVRELFQMAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~----~~g------------~~~~~v~~lf~~a~ 258 (426)
|+.+...++|+||||+|||+|+..++... +...++++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56777889999999999999999998754 556666665432211 111 11222222333444
Q ss_pred cCCCEEEEEeCCCcccC
Q 014332 259 SKKACIVFFDEVDAIGG 275 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~ 275 (426)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999974
No 118
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.19 E-value=5.8e-05 Score=85.41 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=102.8
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc-------CCcEEEEecc
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGS 236 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l-------~~~~i~v~~~ 236 (426)
+.....++|.++.+++|.+.+... -..++-+.|+|++|+|||+||+.+++.. ...++.++.+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 344456999999999999988531 1235568999999999999999998752 2223344433
Q ss_pred hh-----hhhh------h----------cchHHHHHHHHHHHHcC--CCEEEEEeCCCcccCCccCCCCCCChHHHHHHH
Q 014332 237 EL-----VQKY------V----------GEGARMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 293 (426)
Q Consensus 237 ~l-----~~~~------~----------g~~~~~v~~lf~~a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 293 (426)
.. .... . ......+...+...... .+.+|+||+++.. .
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------~------ 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------W------ 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------H------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------H------
Confidence 21 0000 0 01112222233322232 3679999999753 1
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecC-CCHHHHHHHHHHHHhcCCCCCCccHHHHHHhCCC
Q 014332 294 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (426)
Q Consensus 294 ~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~-P~~~er~~Il~~~l~~~~~~~~v~l~~la~~t~g 372 (426)
++..+ ..+..||+||.......... .....+.++. .+.++-.++|..+..............|++.+.|
T Consensus 250 ----~~~~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 250 ----VLKAF--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG 319 (1249)
T ss_dssp ----HHTTT--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTT
T ss_pred ----HHHhh--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCC
Confidence 12222 34567888888664432111 2234677775 8888889999877743322222346789999988
Q ss_pred CcH
Q 014332 373 STG 375 (426)
Q Consensus 373 ~sg 375 (426)
..-
T Consensus 320 lPL 322 (1249)
T 3sfz_A 320 SPL 322 (1249)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 119
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.16 E-value=5.1e-06 Score=76.44 Aligned_cols=75 Identities=7% Similarity=0.049 Sum_probs=62.3
Q ss_pred chhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCcEEeecccccEEeccCCCCCCC
Q 014332 73 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152 (426)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~ 152 (426)
+..++.++ +++|+.+|+++++++++ +++|. .++.+|+|.+...++..+|+||++|+++ .++.++..+|.+..-
T Consensus 87 LkeElerL-~sPPL~iGtvlev~dd~----~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~G 159 (251)
T 3m9b_A 87 LREEVDRL-GQPPSGYGVLLATHDDD----TVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVG 159 (251)
T ss_dssp HHHHHHHH-HSCCEEEEEEEEECSSS----CEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCS
T ss_pred HHHHHHHh-cCCCceEEEEEEEcCCC----EEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCcc
Confidence 45555555 78999999999998753 47777 5889999999999999999999999995 699999999887655
Q ss_pred cc
Q 014332 153 SV 154 (426)
Q Consensus 153 ~~ 154 (426)
.+
T Consensus 160 ev 161 (251)
T 3m9b_A 160 EI 161 (251)
T ss_dssp EE
T ss_pred cE
Confidence 44
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.16 E-value=5.9e-06 Score=75.40 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh----hhh--hc------------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKY--VG------------------------ 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~----~~~--~g------------------------ 244 (426)
|+.++..++|+||||+|||+|++.++... +..++.++..... ... .+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46677789999999999999999999653 4455555432211 000 00
Q ss_pred ------chHHHHHHHHHHHHcCCCE--EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 245 ------EGARMVRELFQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 245 ------~~~~~v~~lf~~a~~~~p~--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
........+...+....|. +|+|||+..+... +....+.+...+..+. ...++.||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~--------d~~~~~~~~~~l~~~~---~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD--------KPAMARKISYYLKRVL---NKWNFTIYATSQY 167 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS--------CGGGHHHHHHHHHHHH---HHTTEEEEEEEC-
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC--------CHHHHHHHHHHHHHHH---HhCCCeEEEEecc
Confidence 1122233344444556788 9999999987531 2222334444443331 1235778888876
Q ss_pred C
Q 014332 317 P 317 (426)
Q Consensus 317 ~ 317 (426)
.
T Consensus 168 ~ 168 (235)
T 2w0m_A 168 A 168 (235)
T ss_dssp -
T ss_pred C
Confidence 5
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.16 E-value=6e-06 Score=76.14 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh--c-------CCcEEEEecchh------hhh--hhcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR--T-------DACFIRVIGSEL------VQK--YVGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~--l-------~~~~i~v~~~~l------~~~--~~g~--------------- 245 (426)
|+.+...++|+||||+|||+|++.++.. . +...++++.... ... .+|-
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5677788999999999999999999984 3 456777776541 000 0110
Q ss_pred -hH---HHHHHHHHHHHcCCCEEEEEeCCCcccC
Q 014332 246 -GA---RMVRELFQMARSKKACIVFFDEVDAIGG 275 (426)
Q Consensus 246 -~~---~~v~~lf~~a~~~~p~Il~iDEiD~l~~ 275 (426)
.. ..+..+.+.+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 1122344445557899999999998864
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.15 E-value=4.4e-06 Score=75.85 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=33.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
|+.++..++|+||||+|||++++.+|...+...+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5777788999999999999999999986567777777654
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.13 E-value=1.5e-06 Score=101.60 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=83.6
Q ss_pred CccChhHHHhh---CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhhh----hc--------chHH
Q 014332 187 PMLHPEKFVKL---GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VG--------EGAR 248 (426)
Q Consensus 187 ~l~~~~~~~~~---g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~~----~g--------~~~~ 248 (426)
+...+++..-+ |+.++..++|+|+||+|||+||..+|..+ +.++++++..+..... .| ..+.
T Consensus 714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~ 793 (2050)
T 3cmu_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 793 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCC
Confidence 34456666666 48889999999999999999999999865 4568888887655443 12 1111
Q ss_pred HHHHHHHHHHc----CCCEEEEEeCCCcccC-CccCCCCC-CC-hHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 249 MVRELFQMARS----KKACIVFFDEVDAIGG-ARFDDGVG-GD-NEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 249 ~v~~lf~~a~~----~~p~Il~iDEiD~l~~-~r~~~~~~-~~-~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.+.+++..++. ..|++||||.++.+.. ...++..+ .. .-..+.+.+++..+..+....++.||+++...
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 23444444433 7789999999999976 22111111 11 11133455656566555556778888877543
No 124
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.11 E-value=7.2e-06 Score=75.86 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=72.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHH--Hh--cCCcEEEEecchhhhh------hhc-----------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVA--NR--TDACFIRVIGSELVQK------YVG----------------------- 244 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA--~~--l~~~~i~v~~~~l~~~------~~g----------------------- 244 (426)
|+.++..+.|.||+|+|||||++.++ .. .+...+.+........ .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 56778889999999999999999998 32 2444444443221110 000
Q ss_pred -------------chHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014332 245 -------------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (426)
Q Consensus 245 -------------~~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI 311 (426)
........+........|.+|++||.-.+..... ........+..++..+. ..++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEE
Confidence 0112223333444557888999999877643110 12334444666666653 2356788
Q ss_pred EEeCCCCCCC-----ccccCCCCc-ceEEEec
Q 014332 312 MATNRPDTLD-----PALLRPGRL-DRKVEFG 337 (426)
Q Consensus 312 ~atn~~~~ld-----~al~r~gRf-~~~i~~~ 337 (426)
++|+...... +.+.. .+ |+.+.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 8888765542 22222 44 6666664
No 125
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.09 E-value=3.9e-06 Score=85.82 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=36.1
Q ss_pred CcccccccccCCCCcccccc-CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 152 PSVTMMTVEEKPDVTYNDVG-GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 152 ~~~~~~~~~~~~~~~~~di~-G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+..+..+++++.+.+|+++- ++..++..+...+.. ....++|.||||||||+++.+++..+
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44456678888999999875 555555555555542 22389999999999999999999876
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.07 E-value=4.7e-06 Score=82.39 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=52.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----hhc-----------chHHHHHHHHH-HHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG-----------EGARMVRELFQ-MAR 258 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~----~~g-----------~~~~~v~~lf~-~a~ 258 (426)
|+++...++|+||||+|||+||..+|... +.+++.++...-... ..| .....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57778889999999999999999998754 567777776432211 011 01122223332 334
Q ss_pred cCCCEEEEEeCCCcccC
Q 014332 259 SKKACIVFFDEVDAIGG 275 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l~~ 275 (426)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999975
No 127
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=7.1e-06 Score=79.96 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhh--h------hhhcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV--Q------KYVGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~--~------~~~g~--------------- 245 (426)
|+++..-++|+||||+|||+++..+|... +...++++...-. . ...|-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 66777889999999999999999999864 4567777765421 0 00010
Q ss_pred -hH---HHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 246 -GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 246 -~~---~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.+ ..+..+....+. ..+.+|+||.+..+......+ .+...+.+..+.+++..+..+....++.||++...
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG-RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT-TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 123344445555 778999999999986422111 01111222334444444443333346667766543
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.92 E-value=1.2e-05 Score=78.97 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhh-----hh---hcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ-----KY---VGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~-----~~---~g~--------------- 245 (426)
|+.+..-++|+||||+|||+++..+|... +...++++....+. .+ .|-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56777789999999999999999999862 45677777654211 00 000
Q ss_pred -hH---HHHHHHHHHHHc--CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 246 -GA---RMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 246 -~~---~~v~~lf~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
.+ ..+..+....+. ..+.+|+||.+..+......+ .+.....+..+.+++..+..+....++.||++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~-~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG-RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG-GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 11 122233344555 678999999999986422110 01111122234444444433333446667766543
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.91 E-value=2e-05 Score=76.24 Aligned_cols=117 Identities=12% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc-----CCcEEEEecchhhhh----hhc------------chHHHHHHHHHH
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQK----YVG------------EGARMVRELFQM 256 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l-----~~~~i~v~~~~l~~~----~~g------------~~~~~v~~lf~~ 256 (426)
|+.+. -++|+||||+|||+|+-.++... +..+++++..+-... ..| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 68999999999999988877643 567888887543221 111 112220122222
Q ss_pred ---HHcCCCEEEEEeCCCcccCCccCCCCCCCh-----HHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 257 ---ARSKKACIVFFDEVDAIGGARFDDGVGGDN-----EVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 257 ---a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~-----~~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.+...|.+|+||-|..+.+...-.+..++. ...+.+.+.|..+..+-...++.+|++-.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 255789999999999997532111111111 23344445544433333345666666543
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.88 E-value=1.7e-05 Score=79.63 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=65.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecchhhhh--------hhcc---------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQK--------YVGE--------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~l~~~--------~~g~--------------- 245 (426)
|+.+..-++|+||||+|||+|++.++-.. +...++++..+.... .+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56777789999999999999999776322 344677776542110 0110
Q ss_pred -h---HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014332 246 -G---ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (426)
Q Consensus 246 -~---~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~ 316 (426)
. ...+..+...+....|.+|+||++-.+......+ .++-...++.+.+++..+..+....++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0 1122233344445788999999998886533221 11112334334444444433333446777877765
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.85 E-value=2.9e-05 Score=76.48 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecch
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 237 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~ 237 (426)
|+++..-+.|+||||+|||+|++.++... +...++++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 67777889999999999999999999876 24557777644
No 132
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.84 E-value=1.3e-05 Score=73.20 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------CCcEEEEecch
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 237 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------~~~~i~v~~~~ 237 (426)
|+.+..-+.|.||+|+|||+|++.++... +...+.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 56777789999999999999999999843 23366666543
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.82 E-value=6.6e-05 Score=69.09 Aligned_cols=39 Identities=33% Similarity=0.327 Sum_probs=30.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
|+.++..++|+||||+|||+++..+|... +...+.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 67778889999999999999998887643 5556655543
No 134
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.81 E-value=1.4e-05 Score=70.22 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
+..++|+|+||+||||++++++..++.+++.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 45689999999999999999999999998887765443
No 135
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=3.1e-05 Score=71.39 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=44.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecch-------hhhhhhcch-----HHHHHHHHHHHHc----CCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE-------LVQKYVGEG-----ARMVRELFQMARS----KKA 262 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~-------l~~~~~g~~-----~~~v~~lf~~a~~----~~p 262 (426)
..-++++||+|+|||+++..++..+ +...+.+.... +.+. .|-. .....++++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3457888999999999999888765 44555553221 1111 1110 0112345555554 457
Q ss_pred EEEEEeCCCcc
Q 014332 263 CIVFFDEVDAI 273 (426)
Q Consensus 263 ~Il~iDEiD~l 273 (426)
.+|+|||++.+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999987
No 136
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.77 E-value=6.8e-06 Score=73.50 Aligned_cols=31 Identities=19% Similarity=0.049 Sum_probs=22.5
Q ss_pred CcceEecCCCChHHHHHHHHHHhc---CCcEEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRV 233 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l---~~~~i~v 233 (426)
.-++++||+|+|||+++..++..+ +...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999996666543 4444433
No 137
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.69 E-value=2.9e-05 Score=75.37 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=66.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---------------C----CcEEEEecchhh--hh---h---hcc-----
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------------D----ACFIRVIGSELV--QK---Y---VGE----- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---------------~----~~~i~v~~~~l~--~~---~---~g~----- 245 (426)
|+++..-++|+||||+|||++|..+|... | ..+++++...-+ .. + .|-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56777789999999999999999998752 2 466677655421 10 0 010
Q ss_pred -----------hH---HHHHHHHHHHHc-CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014332 246 -----------GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (426)
Q Consensus 246 -----------~~---~~v~~lf~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~v 310 (426)
.+ ..+..+....+. ..+.+|+||.+..+......+ .+...+.+..+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-RGKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-TTSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 11 122234444555 678899999999986422111 01111223344455544443333456666
Q ss_pred EEEeC
Q 014332 311 LMATN 315 (426)
Q Consensus 311 I~atn 315 (426)
|++..
T Consensus 253 i~~nq 257 (322)
T 2i1q_A 253 LVTNQ 257 (322)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 66543
No 138
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.68 E-value=0.00044 Score=72.10 Aligned_cols=167 Identities=10% Similarity=0.088 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHH----hcCCcE---EEEecchh-----
Q 014332 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN----RTDACF---IRVIGSEL----- 238 (426)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~----~l~~~~---i~v~~~~l----- 238 (426)
.|.+..+++|.+++... +-...+.|.|+|++|+|||+||+.+++ .....| +.++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988431 112356789999999999999999996 332221 22232221
Q ss_pred ---hhhh---hcc-------------hHHHHHHHHHHHHcC-CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHH
Q 014332 239 ---VQKY---VGE-------------GARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (426)
Q Consensus 239 ---~~~~---~g~-------------~~~~v~~lf~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (426)
.... ++. ....+...+...... ...+|+||+++.. ... .+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~------------~~~-----~~~~- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE------------ETI-----RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH------------HHH-----HHHH-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc------------hhh-----cccc-
Confidence 0000 110 011122233333334 3789999998764 111 1111
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHHhcCCCCCCc--cHHHHHHhCCCCcH
Q 014332 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDI--RFELLARLCPNSTG 375 (426)
Q Consensus 299 l~~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~~~l~~~~~~~~v--~l~~la~~t~g~sg 375 (426)
. .+..||+||....... .. +.....+.++..+.++-.++|..+.......... ....|++.|.|..-
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPL 331 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPA 331 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHH
T ss_pred c------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChH
Confidence 1 4567888887543211 11 1133578899999999999998874322210111 24567788877643
No 139
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.68 E-value=0.00035 Score=72.70 Aligned_cols=75 Identities=16% Similarity=0.307 Sum_probs=57.7
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCCccccCCCCcceEEEecCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGLP 339 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~~~~P 339 (426)
+-+|+|||++.++... ..++...+.++..... .-++.+|++|.+|. .++..++. -|...|.|...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3589999999885421 2456666667766643 55899999999997 78888877 78889999999
Q ss_pred CHHHHHHHHH
Q 014332 340 DLESRTQIFK 349 (426)
Q Consensus 340 ~~~er~~Il~ 349 (426)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9888877774
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=1.8e-05 Score=71.13 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
+.++..++|.||||+||||+++.+|..++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 45667899999999999999999999999988643
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.63 E-value=0.00011 Score=72.49 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec-chhhh---------hhhcchHHHHHHHHHHHHcCCCEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG-SELVQ---------KYVGEGARMVRELFQMARSKKACIVF 266 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~-~~l~~---------~~~g~~~~~v~~lf~~a~~~~p~Il~ 266 (426)
+...+++.||+|+||||++++++..+ +..++.+.- .++.. ..++.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34469999999999999999999865 233333321 11110 01111112244567777788999999
Q ss_pred EeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
+||+- +.+....+.++.. . +..||++++..+.+
T Consensus 202 lDEp~-------------d~e~~~~~~~~~~-------~-G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAAE-------T-GHLVFGTLHTTSAA 234 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHHH-------T-TCEEEEEESCSSHH
T ss_pred cCCCC-------------CHHHHHHHHHHHh-------c-CCEEEEEEccChHH
Confidence 99983 2444444444422 2 33578888876543
No 142
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.62 E-value=2.3e-05 Score=69.32 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
++.++|+||||||||++++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999988744
No 143
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.56 E-value=0.00016 Score=67.54 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=33.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
..|..++|.||||+||||+++.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 456679999999999999999999999877777887765
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.56 E-value=4.3e-05 Score=67.76 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
...+..++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456679999999999999999999999887765
No 145
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.53 E-value=0.00087 Score=67.84 Aligned_cols=156 Identities=20% Similarity=0.194 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCCh---HHHHHHHHHHHHhcC-----CCCCCCeEEEEEe----
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDG-----FDARGNIKVLMAT---- 314 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~l~~-----~~~~~~v~vI~at---- 314 (426)
....+...+.|..+ .|+|+||||+++.... +.+++. .+|+.|+++++--.. --...++++|+|+
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 44555666666333 2999999999986532 122332 366777777653100 0135688999987
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH--------HHHhcCC---CC---CCccHHHHHH-------hCCCC
Q 014332 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK--------IHTRTMN---CE---RDIRFELLAR-------LCPNS 373 (426)
Q Consensus 315 n~~~~ld~al~r~gRf~~~i~~~~P~~~er~~Il~--------~~l~~~~---~~---~~v~l~~la~-------~t~g~ 373 (426)
+.+..+-|.|+. ||...++|+.++.++..+|+. .+...+. .. .+-.+..|++ .+...
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~ 391 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI 391 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCC
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccC
Confidence 234445588887 999999999999999999993 1222111 11 1122445554 34555
Q ss_pred cHHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHHHH
Q 014332 374 TGADIRSVCTEAGMFAIRAR------RKTVTEKDFLDAVNK 408 (426)
Q Consensus 374 sg~di~~l~~~A~~~A~~~~------~~~It~ed~~~A~~~ 408 (426)
..+.++.++..+...+..+- .-.||.+++.+.+..
T Consensus 392 GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 392 GARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp GGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCc
Confidence 56676666665554433321 124888888776644
No 146
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.53 E-value=9.2e-05 Score=70.21 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
|+.+...++|+||||+|||+|++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5667778999999999999999999864
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.52 E-value=4.6e-05 Score=67.57 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=34.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
++.++..+.|.||||+||||+++.++...+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34566779999999999999999999988778888877654
No 148
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.47 E-value=5.8e-05 Score=66.45 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=28.9
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+..|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 456799999999999999999999999877643
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.46 E-value=0.00019 Score=73.14 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~ 235 (426)
|+.++.-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67888889999999999999999998753 456666654
No 150
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00023 Score=65.53 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh----cCCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~----l~~~~i~v~~ 235 (426)
|+.++.-++|+|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6778888999999999999999887643 2556666553
No 151
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.43 E-value=6.9e-05 Score=64.98 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=27.4
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998886544
No 152
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.42 E-value=0.0002 Score=68.41 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEe
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVI 234 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~ 234 (426)
|+.++.-++|.||||+|||+|++.+|... |.+++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 67788889999999999999999999854 43555444
No 153
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.42 E-value=0.00019 Score=83.26 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=80.5
Q ss_pred hhHHHhhCC---CCCCcceEecCCCChHHHHHHHHHHh---cCCcEEEEecchhhh----------------hhhcchHH
Q 014332 191 PEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQ----------------KYVGEGAR 248 (426)
Q Consensus 191 ~~~~~~~g~---~~~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~~~l~~----------------~~~g~~~~ 248 (426)
+.+-..+|. +..+.+.+|||+|||||+||-.++.+ .|.....++...-.. .+...++.
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~ 1496 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1496 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHH
Confidence 334444553 33445999999999999999888754 367777777643221 12334577
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCCh--H-HHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014332 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN--E-VQRTMLEIVNQLDGFDARGNIKVLMATN 315 (426)
Q Consensus 249 ~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~--~-~~~~l~~ll~~l~~~~~~~~v~vI~atn 315 (426)
.+..+...++..++++|++|-+.+|.++....+..++. . ..+.+.+.|..+.+.-...++.+|++..
T Consensus 1497 ~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1497 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 77778888899999999999999998876433222222 1 2344546666665554556777776654
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=9.2e-05 Score=64.49 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=29.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
+..+.|.||+|+||||+++.+|..++.+++ ++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 456999999999999999999999987654 444443
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=6.5e-05 Score=66.66 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=27.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh-cCCcEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR-TDACFIR 232 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~-l~~~~i~ 232 (426)
.+..++|+|+||||||++++.++.. ++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3556999999999999999999999 6766653
No 156
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.39 E-value=7.3e-05 Score=65.96 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=27.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..|+|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 358999999999999999999999988764
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.39 E-value=9.1e-05 Score=64.91 Aligned_cols=29 Identities=38% Similarity=0.600 Sum_probs=26.5
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
.++|.||||+||||+++.+|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 158
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.38 E-value=0.003 Score=58.06 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=25.6
Q ss_pred cceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
.+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 58999999999999999999865 555554444
No 159
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.37 E-value=0.0012 Score=66.72 Aligned_cols=195 Identities=14% Similarity=0.083 Sum_probs=102.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh--------------------hhcchHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK--------------------YVGEGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~--------------------~~g~~~~~v~~lf~~a 257 (426)
+|..+++.|++|+||||++..+|..+ |..+..+++..+... ........++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999999865 555655654432110 0122345566777888
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCC--ccccCCCCcceEE
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLD--PALLRPGRLDRKV 334 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~-~~~ld--~al~r~gRf~~~i 334 (426)
+...+.+++||..-.+. .+......+..+..... ...+++++-+.. .+.++ ..+.....+. .+
T Consensus 179 ~~~~~DvVIIDTaGrl~---------~d~~lm~el~~i~~~~~----pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---------EDKALIEEMKQISNVIH----PHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS---------CCHHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc---------chHHHHHHHHHHHHhhc----CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 87777899999875542 13344444444443332 334444443322 11111 1111101121 23
Q ss_pred EecCCCHHHHHHHHHHHHhcC--C---------CC--CCccHHHHHHhCCCCcHHHHHHHHHHHHH----------HHHH
Q 014332 335 EFGLPDLESRTQIFKIHTRTM--N---------CE--RDIRFELLARLCPNSTGADIRSVCTEAGM----------FAIR 391 (426)
Q Consensus 335 ~~~~P~~~er~~Il~~~l~~~--~---------~~--~~v~l~~la~~t~g~sg~di~~l~~~A~~----------~A~~ 391 (426)
-+.-.|...+...+....... + ++ ...+.+.++.+.-|+ +|+..++..|.. .+.+
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~~k 322 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIKEEDIER 322 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 333333333322211111111 1 11 123466777665553 377777755432 2222
Q ss_pred HcCCCccHHHHHHHHHHHHh
Q 014332 392 ARRKTVTEKDFLDAVNKVIK 411 (426)
Q Consensus 392 ~~~~~It~ed~~~A~~~v~~ 411 (426)
-.....|.+||.+-++.+.+
T Consensus 323 ~~~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 323 FLRGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp HHTTCCCHHHHHHHHHHHHT
T ss_pred HhhCCcCHHHHHHHHHHHHh
Confidence 23456999999999887653
No 160
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00014 Score=69.46 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=31.7
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
..|..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345679999999999999999999988656677776544
No 161
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.34 E-value=0.00032 Score=65.82 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHh---cCCcEEEEecchhhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQ 240 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~---l~~~~i~v~~~~l~~ 240 (426)
+.-|+|.|+||+||||+|+.++.. .|.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 456899999999999999999997 688887677665543
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.34 E-value=7.9e-05 Score=70.32 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=44.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC---CcEEEEecchh---h--------hhhhcchHHHHHHHHHHHHcCCCEE
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL---V--------QKYVGEGARMVRELFQMARSKKACI 264 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l---~--------~~~~g~~~~~v~~lf~~a~~~~p~I 264 (426)
+.+...++|.||+|+||||++++++.... .--+.+....+ . +..+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 35566799999999999999999998642 11222222111 0 0011111122355555665567889
Q ss_pred EEEeCCC
Q 014332 265 VFFDEVD 271 (426)
Q Consensus 265 l~iDEiD 271 (426)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999973
No 163
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.31 E-value=0.00013 Score=63.39 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
...++|.|+|||||||+++.+|..++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35799999999999999999999999988643
No 164
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.28 E-value=0.00014 Score=63.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.1
Q ss_pred CCCCcceEecCCCChHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARA 221 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~lara 221 (426)
.++.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4556789999999999999994
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.28 E-value=0.00083 Score=69.24 Aligned_cols=76 Identities=14% Similarity=0.301 Sum_probs=53.0
Q ss_pred CE-EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCCccccCCCCcceEEEecC
Q 014332 262 AC-IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGL 338 (426)
Q Consensus 262 p~-Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~~~~ 338 (426)
|. +|+|||+..+.... ..++...+..+.... ..-++.+|++|.++. .++..++. -|...|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998774311 123344444444432 234788999999986 68877777 7888999999
Q ss_pred CCHHHHHHHHHH
Q 014332 339 PDLESRTQIFKI 350 (426)
Q Consensus 339 P~~~er~~Il~~ 350 (426)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999988888753
No 166
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.27 E-value=0.00013 Score=68.36 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=28.6
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
-++|.||||||||++|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998876654
No 167
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00018 Score=64.45 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=28.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+..|+|.|+||+||||+++.++..++.+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999999886543
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.27 E-value=0.00047 Score=70.00 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=31.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~ 235 (426)
|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888889999999999999999998743 556666654
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00017 Score=65.65 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
++..|+|.|+||+||||+++.+|..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456799999999999999999999999776543
No 170
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00018 Score=63.84 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+..++|.|+||+||||+++.+|+.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999998876543
No 171
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.24 E-value=0.0025 Score=61.41 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=47.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh-------h-------------hcchHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK-------Y-------------VGEGARMVRELFQM 256 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~-------~-------------~g~~~~~v~~lf~~ 256 (426)
.++..++|.||+|+||||++..+|..+ +..+..+++..+... + .++..+.....+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456679999999999999999999865 445554544322110 1 11222333445555
Q ss_pred HHcCCCEEEEEeCCCc
Q 014332 257 ARSKKACIVFFDEVDA 272 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~ 272 (426)
+....|.+++||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 6667788999998754
No 172
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00018 Score=62.47 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.8
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..|+|.|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987664
No 173
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.24 E-value=0.00016 Score=63.93 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=29.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
|..|+|.|+||+||||+++.++..++.+++ +..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 456899999999999999999999987764 444443
No 174
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.00021 Score=64.05 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=27.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
+.-|+|.|++|+||||+++.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5579999999999999999999999877654
No 175
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.0012 Score=66.62 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=98.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh----------hhh----------cchHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----------KYV----------GEGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~----------~~~----------g~~~~~v~~lf~~a 257 (426)
+|..+++.||+|+||||++..+|..+ +..+..+++..+.. ... ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999999765 55555555432110 000 11223344555666
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CCCC--ccccCCCCcceEE
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DTLD--PALLRPGRLDRKV 334 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~-~~ld--~al~r~gRf~~~i 334 (426)
....+.+|+||....+... .+......+..+...+. ...+++++.+..- +.++ ..+.....+ ..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-------~d~~lm~el~~i~~~~~----pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-------EETKLLEEMKEMYDVLK----PDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-------CTTHHHHHHHHHHHHHC----CSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCcccc-------CCHHHHHHHHHHHHhhC----CcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 6567889999988654200 13444445555554442 3345555544321 1111 011110011 233
Q ss_pred EecCCCHHHH----HHHHHHHHhc-------CCCC--CCccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH---------
Q 014332 335 EFGLPDLESR----TQIFKIHTRT-------MNCE--RDIRFELLARLCPNSTGADIRSVCTEAGMFAIRA--------- 392 (426)
Q Consensus 335 ~~~~P~~~er----~~Il~~~l~~-------~~~~--~~v~l~~la~~t~g~sg~di~~l~~~A~~~A~~~--------- 392 (426)
-+.-.|...+ ..+....-.. .++. ...+.+.++.+.-|+ +|+..++..|.......
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~k~ 321 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKMEDV 321 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC-------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444433222 2233221100 0111 123456666654443 38888887665421111
Q ss_pred cCC--CccHHHHHHHHHHHHh
Q 014332 393 RRK--TVTEKDFLDAVNKVIK 411 (426)
Q Consensus 393 ~~~--~It~ed~~~A~~~v~~ 411 (426)
... ..|.+||.+.++.+.+
T Consensus 322 ~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 322 MEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp ------CCHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHh
Confidence 123 6999999999988764
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.22 E-value=0.00013 Score=63.99 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
+..|+|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998877
No 177
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.21 E-value=0.0012 Score=68.56 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=67.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh----hhhh--hc----------------------ch
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL----VQKY--VG----------------------EG 246 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l----~~~~--~g----------------------~~ 246 (426)
++.+...++|.||+|+|||+|++.++... |...+.+...+- .... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 66778889999999999999999999754 444555543221 1000 00 12
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 247 ~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
....+.++..+....|.+|+||=+..+-.. .........+..++..+. ..++.+|++++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 345556677777788999999955544221 011225556666766654 2245666666654
No 178
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.21 E-value=0.00017 Score=75.61 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=26.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
...++|+||||||||+++.+++..+ +..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3578999999999999999998854 555554433
No 179
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.00019 Score=61.90 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.4
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
-++|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887653
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.20 E-value=0.00014 Score=64.01 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=26.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
+..++|.|+||+||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 345899999999999999999999987654
No 181
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.0002 Score=65.63 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=27.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..+..++|.|+||+||||+++.+|..++.+++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 345679999999999999999999999877654
No 182
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.19 E-value=0.00014 Score=63.52 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=23.8
Q ss_pred CcceEecCCCChHHHHHHHHHH-hcCCcEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVAN-RTDACFI 231 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~-~l~~~~i 231 (426)
.-++|.||||+||||+++.++. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4589999999999999999998 4554433
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.18 E-value=0.0015 Score=58.61 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=67.4
Q ss_pred CcceEecCCCChHHHHHHHHHHhc---CCcEEEEe---cc------hhhhhhh-------------c----chHHHHHHH
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVI---GS------ELVQKYV-------------G----EGARMVREL 253 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l---~~~~i~v~---~~------~l~~~~~-------------g----~~~~~v~~l 253 (426)
..+++|+++|.|||++|-++|-+. |..+..+. +. .++.... . +........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998765 55555552 21 2333320 0 012233444
Q ss_pred HHHHH----cCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 014332 254 FQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (426)
Q Consensus 254 f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~ld~al~r~gR 329 (426)
+..++ ...+.+|+|||+-....-..- + ...+++++.. ...+.-||+|+|.+ +++|+. .
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~---~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-----P---LEEVISALNA-----RPGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C---HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-----C---HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--h
Confidence 44444 356789999999543111100 1 1234455542 34567799999875 455554 5
Q ss_pred cceEEEec
Q 014332 330 LDRKVEFG 337 (426)
Q Consensus 330 f~~~i~~~ 337 (426)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 55555544
No 184
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.18 E-value=0.00019 Score=65.37 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=27.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999999777644
No 185
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.17 E-value=0.0002 Score=65.60 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
+..++-|+|.||||+||+|.|+.+|+.++.+.+ +..+++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 345677899999999999999999999987654 4455544
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.17 E-value=0.00024 Score=62.39 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
++..+.|.|++|+||||+++.++..+ |.+++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45568899999999999999999987 889988876544
No 187
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.16 E-value=0.00056 Score=66.70 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecchhhh-----h---hhcchHHHHHHHHHHHHcCCCEEEEEeC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQ-----K---YVGEGARMVRELFQMARSKKACIVFFDE 269 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~l~~-----~---~~g~~~~~v~~lf~~a~~~~p~Il~iDE 269 (426)
.+...++|.||+|+|||||+++++.... ...+.+....... . ++..+....+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3567899999999999999999999763 3345555432110 1 1100222345566777778899999999
Q ss_pred CCc
Q 014332 270 VDA 272 (426)
Q Consensus 270 iD~ 272 (426)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 754
No 188
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.16 E-value=0.0018 Score=67.13 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=69.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHH--HHhc--CCcEEEEecchhhhh------hhcc----------------------
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAV--ANRT--DACFIRVIGSELVQK------YVGE---------------------- 245 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laral--A~~l--~~~~i~v~~~~l~~~------~~g~---------------------- 245 (426)
++.++..++|.||+|+|||+|++.+ +... +...+.+++.+.... .+|-
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 4567788999999999999999994 4432 444555655331100 0000
Q ss_pred --------hHHHHHHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 246 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 246 --------~~~~v~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
................|.+|+|||.-.+.+. .+.+....+.+..++..+.. .++.||++|+..
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~ 185 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERI 185 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCC
Confidence 0112233334444566779999999876432 12245666777788777641 256688888877
Q ss_pred CCC
Q 014332 318 DTL 320 (426)
Q Consensus 318 ~~l 320 (426)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.15 E-value=0.001 Score=64.36 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
|+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67888889999999999999999998654 446666653
No 190
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.15 E-value=0.00024 Score=63.10 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
+.-|+|.|+||+||||+++.++..++.+++ +...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 567999999999999999999999986654 444443
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.15 E-value=0.00027 Score=63.41 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=29.3
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
.++..+.|.||+|+||||+++.++..+|..+ +++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3466799999999999999999999987544 455544
No 192
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.15 E-value=0.0002 Score=63.07 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
+.-++|.||||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00023 Score=70.69 Aligned_cols=78 Identities=21% Similarity=0.343 Sum_probs=47.3
Q ss_pred HHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC----CcEEEEecc-hhh-hh---hh-----cchHHHHHHHHHHHHc
Q 014332 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGS-ELV-QK---YV-----GEGARMVRELFQMARS 259 (426)
Q Consensus 194 ~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~----~~~i~v~~~-~l~-~~---~~-----g~~~~~v~~lf~~a~~ 259 (426)
+..+.+.++..++|.||+|+||||++++++.... ..++.+..+ ++. .. ++ |.....++..+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344455666799999999999999999998652 333333211 100 00 01 1111223445556666
Q ss_pred CCCEEEEEeCCC
Q 014332 260 KKACIVFFDEVD 271 (426)
Q Consensus 260 ~~p~Il~iDEiD 271 (426)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 789999999984
No 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.15 E-value=0.0015 Score=72.42 Aligned_cols=44 Identities=30% Similarity=0.300 Sum_probs=36.4
Q ss_pred ccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+|.+..+++|.+.+.. ....+-+.|+||+|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 38999999999998753 123567999999999999999999863
No 195
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.14 E-value=0.00043 Score=61.97 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999865
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.14 E-value=0.0011 Score=61.26 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=29.3
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecc-hhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELV 239 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~-~l~ 239 (426)
.++++||+|+|||.++.+++...+...+.+... .++
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 489999999999999999999887776666544 443
No 197
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00026 Score=64.14 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=25.9
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
|+|.||||+||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998776644
No 198
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.13 E-value=0.00029 Score=64.81 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=27.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
+..|+|.|+||+||||+++.+|..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999776543
No 199
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.13 E-value=0.00028 Score=62.22 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=27.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
+..|+|.|+||+||||+++.++..++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4568999999999999999999999876654
No 200
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.12 E-value=0.00026 Score=61.85 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=28.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
+..++|.||+|+||||+++.++..+|..++ ++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 456899999999999999999998876554 44444
No 201
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.12 E-value=0.00027 Score=63.93 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.9
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
|+|.||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998877644
No 202
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.11 E-value=0.0003 Score=60.84 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
.|+|.|+||+||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999988764
No 203
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.10 E-value=0.00025 Score=64.63 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
.+..|+|.||||+||||+++.+|..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999997654
No 204
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.09 E-value=0.00028 Score=65.62 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=29.0
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+|..|+|.||||+||||+++.+++.++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567799999999999999999999998766543
No 205
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.08 E-value=0.0014 Score=61.91 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 261 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
.|.+|++||--+- -+...+..+.+++..+. ...+..||++|+..+
T Consensus 165 ~p~lLllDEPts~----------LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSA----------LDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSS----------CCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHH
T ss_pred CCCEEEEeCcccc----------CCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHH
Confidence 8999999996442 37778888888887763 234567888998754
No 206
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.07 E-value=0.00031 Score=62.85 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=27.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 44689999999999999999999998766543
No 207
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.07 E-value=0.0022 Score=63.25 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=35.1
Q ss_pred HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
|....|.+|++||--+- -++..+..+++++..+. ...++.||++|+..+
T Consensus 177 AL~~~P~lLLlDEPTs~----------LD~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 177 ALASNPKVLLCDQATSA----------LDPATTRSILELLKDIN---RRLGLTILLITHEMD 225 (366)
T ss_dssp HTTTCCSEEEEESTTTT----------SCHHHHHHHHHHHHHHH---HHSCCEEEEEESCHH
T ss_pred HHhcCCCEEEEECCCcc----------CCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHH
Confidence 44467889999996543 37888888888887763 123567888888754
No 208
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.05 E-value=0.0036 Score=58.72 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.8
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566779999999999999999999854
No 209
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.05 E-value=0.00018 Score=70.57 Aligned_cols=50 Identities=16% Similarity=0.342 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHhcCccChhHHHhhCCCCC--CcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPP--KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~--~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
+++...+.+...+... +.+. ..++|+||||+|||++++++|..++.+|+.
T Consensus 3 ~~~~L~~~il~~l~~~-----------i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNR-----------IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CHHHHHHHHHHHHHHT-----------TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-----------hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4455556665555432 2222 359999999999999999999999887744
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.04 E-value=0.00037 Score=62.48 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
.++..+.|.||+|+||||++++++..+ |...+.+++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456679999999999999999999987 554456666554
No 211
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.03 E-value=0.0019 Score=61.21 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 257 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
|-...|.+|++||--+- -++..+..+.+++..+.. ..+..||++|+..+.+
T Consensus 157 aL~~~P~lLlLDEPts~----------LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAG----------LDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHTTCCSEEEEECTTTT----------CCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHcCCCEEEEECcccc----------CCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 44577889999996543 377778888888876530 1145688899887654
No 212
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.03 E-value=0.00036 Score=63.41 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=28.0
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
++|.||||+||+|.|+.+|+.++.+.+ +..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 688999999999999999999987765 4445443
No 213
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.97 E-value=0.0021 Score=63.82 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4566678999999999999999999854
No 214
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.96 E-value=0.00038 Score=61.27 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=26.9
Q ss_pred cceEecCCCChHHHHHHHHHHhcC---CcEEEEecchh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL 238 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l 238 (426)
-|+|.|+||+||||+++.+++.++ ..+..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 478999999999999999999875 23555554333
No 215
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.95 E-value=0.00056 Score=60.32 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=27.2
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~ 234 (426)
+.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88888765
No 216
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.95 E-value=0.00038 Score=67.56 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=29.9
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
..++|+||+|+|||++++.+|..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988888764
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00058 Score=60.90 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=29.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc-CCcEEEEe
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVI 234 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l-~~~~i~v~ 234 (426)
.+.-|.|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35678999999999999999999998 57777665
No 218
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.94 E-value=0.0042 Score=57.82 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566779999999999999999999854
No 219
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.00057 Score=62.13 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
+..+.|.||+||||||+++.++..++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 346899999999999999999999987665
No 220
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.93 E-value=0.00048 Score=62.39 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=26.3
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.++|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998777544
No 221
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.91 E-value=0.0035 Score=61.71 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|||||||++.+|...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4566678999999999999999999854
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.90 E-value=0.004 Score=61.26 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++++|...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4566678999999999999999999854
No 223
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00052 Score=61.06 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=25.9
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
.+.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987664
No 224
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00042 Score=64.90 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=28.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
...+.|.|++|+||||+++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 56899999999999999999999999887643
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.89 E-value=0.00075 Score=60.51 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=26.6
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
.+.|.||+|+||||+++.++. +|.+++ +...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 478999999999999999998 787765 444443
No 226
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.89 E-value=0.0029 Score=59.78 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=24.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34667779999999999999999999854
No 227
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.86 E-value=0.00063 Score=63.07 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
.+..+.|.||+|+||||+++.+++.++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678999999999999999999999887654
No 228
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.86 E-value=0.0023 Score=65.80 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=31.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~ 235 (426)
|+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777889999999999999999998754 456666654
No 229
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.86 E-value=0.00061 Score=62.30 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=26.9
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecchhh
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~ 239 (426)
++|.||||+||||+++.++..++.+++ +..+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~ 35 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIF 35 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHH
Confidence 789999999999999999999987554 443443
No 230
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.85 E-value=0.0033 Score=61.81 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556678999999999999999999854
No 231
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.84 E-value=0.00099 Score=59.74 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
.+.|+|++||||||+++.++..+|.+++ ++..+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~ 49 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHE 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHH
Confidence 4889999999999999999999887775 45555443
No 232
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.0035 Score=61.84 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4556678999999999999999999854
No 233
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.82 E-value=0.00081 Score=59.52 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
|.|.|++||||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 888876543
No 234
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.82 E-value=0.0052 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.4
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999888764
No 235
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.81 E-value=0.0037 Score=68.77 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHh-----cCCc----EE----------EEecchhhhhhhcchHHHHHHHHHHH-Hc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANR-----TDAC----FI----------RVIGSELVQKYVGEGARMVRELFQMA-RS 259 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~-----l~~~----~i----------~v~~~~l~~~~~g~~~~~v~~lf~~a-~~ 259 (426)
..+..++|.||.|+||||+.|.++.- .+.. .. .+...+..............++...+ ..
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhc
Confidence 34566999999999999999998742 2211 11 11111111111111111112222112 25
Q ss_pred CCCEEEEEeCCCcccCCccCCCCCCChHHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 260 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
..|++|++||.-+= -++.....+. .++..+. ...+..+|++|+..+..
T Consensus 751 ~~p~LlLLDEP~~G----------lD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 751 TSQSLVILDELGRG----------TSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CTTCEEEEESTTTT----------SCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGG
T ss_pred cCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHH
Confidence 77899999997552 2444444443 5665542 12356788999876543
No 236
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00071 Score=60.53 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+.|.|++|+||||+++.++. +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88766543
No 237
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.79 E-value=0.0038 Score=56.01 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCcceEecCCCChHH-HHHHHHHHhc--CCcEEEEecchhhhhhhcchH------------HHHHHHHHHHHcCCCEEEE
Q 014332 202 PKGVLCYGPPGTGKT-LLARAVANRT--DACFIRVIGSELVQKYVGEGA------------RMVRELFQMARSKKACIVF 266 (426)
Q Consensus 202 ~~~vLL~GppGtGKT-~laralA~~l--~~~~i~v~~~~l~~~~~g~~~------------~~v~~lf~~a~~~~p~Il~ 266 (426)
.+-.++|||.|+||| .|.+++.+.. +..++.+... +-..|...-. ....+++...+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 345888999999999 8999988754 5666666533 1111110000 01122333333 245999
Q ss_pred EeCCCcc
Q 014332 267 FDEVDAI 273 (426)
Q Consensus 267 iDEiD~l 273 (426)
|||++.+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999998
No 238
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.78 E-value=0.0048 Score=60.51 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4566678999999999999999999854
No 239
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.77 E-value=0.00084 Score=62.16 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=26.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
+..+.|.||+|+|||++++.+|..++.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 557999999999999999999999987664
No 240
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.77 E-value=0.0031 Score=60.79 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+++...+.|.||+|+|||||++.++...
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35677789999999999999999999854
No 241
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.76 E-value=0.00036 Score=62.72 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=25.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
.+.-|+|.|+||+||||+++.+++.++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999875443
No 242
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.75 E-value=0.0026 Score=69.03 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=39.4
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhcCccCh-hHHHhhCCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHP-EKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~-~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
..+..+|++++-.....+.+.+.-..|.... +.+.. .+.....+++.||+|+|||+++..++..
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445578888666666666655544554321 11111 1233467999999999999977777543
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.74 E-value=0.0008 Score=60.09 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.8
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEE
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v 233 (426)
.+.|.|++|+|||++++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999999877643
No 244
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.001 Score=59.51 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
+.-|+|.|+||+||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999988764
No 245
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.73 E-value=0.0035 Score=62.01 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4566678999999999999999999853
No 246
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.70 E-value=0.00042 Score=62.31 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=24.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDA 228 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~ 228 (426)
.+.-|+|.|+||+||||+++.++..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999998643
No 247
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.70 E-value=0.0031 Score=63.95 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67888889999999999999999998754 566666654
No 248
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.69 E-value=0.0034 Score=61.33 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
|+.+..-++|.|+||+|||+++..+|... +.++..++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 67888889999999999999999998763 566655543
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.001 Score=59.69 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
..++.-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45677899999999999999999999874
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.65 E-value=0.00099 Score=59.24 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=28.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
+..|.|.|++||||||+++.++.. |.+++ +...+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~ 43 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAA 43 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHH
Confidence 456899999999999999999998 76665 4545443
No 251
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.64 E-value=0.0039 Score=61.69 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4556678999999999999999999854
No 252
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.63 E-value=0.00072 Score=65.90 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~ 236 (426)
++-++|.||+|+|||+|+..+|+.++..+|..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34689999999999999999999999888776654
No 253
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.62 E-value=0.0013 Score=61.46 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.1
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
++..+.|.||+|+||||+++.+|..+|..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456899999999999999999999987665
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.0015 Score=57.58 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=29.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
++..++|.|+||+||||+++.++..+ +..+..+++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45568999999999999999999977 444555665444
No 255
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.58 E-value=0.0061 Score=67.27 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=20.0
Q ss_pred CCcceEecCCCChHHHHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~ 224 (426)
+..++|+||.|+||||+.|.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35599999999999999999953
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0012 Score=58.19 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
+++-+.|.||+|+|||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 355689999999999999999998753
No 257
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.56 E-value=0.0016 Score=60.63 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCc--------EEEEecchhhh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSELVQ 240 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~--------~i~v~~~~l~~ 240 (426)
.+.-|.|.|++|+||||+|+.++..++.+ +..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34568999999999999999999999876 33566666643
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.54 E-value=0.0011 Score=59.06 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++.-+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456678999999999999999999876
No 259
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.54 E-value=0.0011 Score=63.76 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=29.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
+.-++|.||+|+|||+||..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999888777654
No 260
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.54 E-value=0.0038 Score=55.89 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc--------hhhhhhhcch-----HHHHHHHHHHHHcCCCEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS--------ELVQKYVGEG-----ARMVRELFQMARSKKACIV 265 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~--------~l~~~~~g~~-----~~~v~~lf~~a~~~~p~Il 265 (426)
.+-.+++||.|+|||+.+-.++..+ +..++.+... .+.+. .|-. .....++++.+.. ...+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvV 85 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVI 85 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEE
Confidence 3457889999999999998888765 4444444211 01111 1100 0001245544432 35699
Q ss_pred EEeCCCcc
Q 014332 266 FFDEVDAI 273 (426)
Q Consensus 266 ~iDEiD~l 273 (426)
+|||++.+
T Consensus 86 iIDEaqfl 93 (191)
T 1xx6_A 86 AIDEVQFF 93 (191)
T ss_dssp EECSGGGS
T ss_pred EEECCCCC
Confidence 99999987
No 261
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.54 E-value=0.00079 Score=60.50 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc-CCcEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACFI 231 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l-~~~~i 231 (426)
++.-+.|.||+|+||||+++.++..+ +..++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 34568899999999999999999987 55444
No 262
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.53 E-value=0.0081 Score=55.05 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.3
Q ss_pred CCcceEecCCCChHHHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVA 223 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA 223 (426)
++.+++.||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5679999999999998766554
No 263
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.51 E-value=0.0056 Score=64.15 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35677789999999999999999999865
No 264
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0013 Score=59.37 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC----CcEEEEecchh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL 238 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~----~~~i~v~~~~l 238 (426)
.++..++|.|++|+||||+++.++..++ .+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4566789999999999999999998764 55777776544
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.49 E-value=0.0014 Score=59.24 Aligned_cols=30 Identities=30% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
+.-|.|.|++|+||||+++.++. +|.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 44689999999999999999998 7776553
No 266
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.49 E-value=0.0017 Score=58.63 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
|..+.|.|++|+|||++++.++..+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3468999999999999999999999977654
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.49 E-value=0.0017 Score=59.72 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=28.3
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..+..+.|.|++|+|||++++.++..+|.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 445678999999999999999999999977653
No 268
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.48 E-value=0.0052 Score=61.80 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=34.3
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
..++++++-.......++.++. .+...++|.||+|+||||++++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456666544444444554431 2344589999999999999999999764
No 269
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.47 E-value=0.0084 Score=53.25 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCcceEecCCCChHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARA 221 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~lara 221 (426)
.+.+++.+|+|+|||..+-.
T Consensus 38 ~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 46799999999999987433
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.0018 Score=58.41 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998764
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.45 E-value=0.014 Score=55.88 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS 236 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~ 236 (426)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46679999999999999999999754 4455555543
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0024 Score=64.18 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
.+.-|+|+|+||+||||+|+.++..++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3566899999999999999999999876554
No 273
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.44 E-value=0.0051 Score=55.05 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=28.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
.++.-+.|.||+|+||||+++.++..+ +..++..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 345568999999999999999999875 5556555443
No 274
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.44 E-value=0.021 Score=51.26 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=35.0
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhCC---CCCCcceEecCCCChHHHHHHHHHHh
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+|++++-.+...+.|.+. .+..+-.++...+ ...+.+++.+|+|+|||..+-..+-.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688887666666666552 1222222222111 12467999999999999877665543
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.43 E-value=0.018 Score=58.87 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
..+..+.|.||+|+||||+++.+|..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 445668999999999999999999865
No 276
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.39 E-value=0.0085 Score=68.81 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=26.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.++++..+.|.||+|+|||||++.+.+...
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 456778899999999999999999998763
No 277
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.38 E-value=0.0017 Score=57.79 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.++.-+.|.||+|+||||+++.++....
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456788999999999999999998753
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.38 E-value=0.0017 Score=58.55 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456788999999999999999999774
No 279
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.37 E-value=0.012 Score=61.53 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35677789999999999999999999854
No 280
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.37 E-value=0.0068 Score=63.63 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35677789999999999999999999865
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.35 E-value=0.0022 Score=56.55 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
.+.|.||+|+||||+++.++...+. .+.+++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555444
No 282
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.33 E-value=0.012 Score=61.61 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=25.3
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 35677789999999999999999999864
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.32 E-value=0.0017 Score=62.63 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=28.2
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
+-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 357899999999999999999999877766654
No 284
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.32 E-value=0.002 Score=66.62 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=45.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecch-hhhh---h--------hcchHHHHHHHHHHHHcCCCEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE-LVQK---Y--------VGEGARMVRELFQMARSKKACIVF 266 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~~-l~~~---~--------~g~~~~~v~~lf~~a~~~~p~Il~ 266 (426)
.+.+++|.||+|+||||++++++.... ...+.+.... +.-. . ++.....+..+...+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 456799999999999999999998763 3455554432 2100 0 011111233445555567899999
Q ss_pred EeCCC
Q 014332 267 FDEVD 271 (426)
Q Consensus 267 iDEiD 271 (426)
+.|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99974
No 285
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.30 E-value=0.0017 Score=63.36 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=28.2
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
.-++|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368999999999999999999999877666553
No 286
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.30 E-value=0.0017 Score=61.86 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=24.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhc-CCcEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT-DACFI 231 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l-~~~~i 231 (426)
.-++|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458999999999999999999864 54444
No 287
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.29 E-value=0.018 Score=62.59 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~ 225 (426)
++..++|+||.|+||||+.|.++.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456999999999999999999863
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.28 E-value=0.0026 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
+.|+|.||+|+|||+|++.+..+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 458999999999999999998876433
No 289
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.28 E-value=0.014 Score=61.88 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
-.+.|++.+..++.. +.-.|++||||||||+++-.+..++ +..++.+..
T Consensus 190 LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 356777777777642 2247999999999998665555433 555554444
No 290
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.24 E-value=0.011 Score=62.10 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45677889999999999999999999864
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.24 E-value=0.0021 Score=57.58 Aligned_cols=27 Identities=30% Similarity=0.576 Sum_probs=22.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
+++.+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 466799999999999999999998653
No 292
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.24 E-value=0.0023 Score=55.42 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.+...+.|.||.|+|||||+++++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45666679999999999999999999976
No 293
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.20 E-value=0.0025 Score=60.55 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=27.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEecchh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l 238 (426)
+.-|.|.|++|+||||+++.++ .+|.+++ ++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i--d~D~~ 108 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII--DSDHL 108 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE--EHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE--ehhHH
Confidence 4468999999999999999999 6787664 44444
No 294
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.19 E-value=0.0017 Score=58.48 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+++++|.||+|+|||+||..++...+ .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56799999999999999999998866 554433
No 295
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.18 E-value=0.0025 Score=58.00 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4566779999999999999999999976
No 296
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.18 E-value=0.0025 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhcC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~ 227 (426)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.17 E-value=0.0019 Score=57.97 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
++..+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455688999999999999999999877
No 298
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.17 E-value=0.0084 Score=58.04 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=29.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
..++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456779999999999999999999865 555555554
No 299
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.15 E-value=0.0048 Score=65.08 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++++||||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3569999999999999988877543
No 300
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.14 E-value=0.0031 Score=56.78 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=27.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
..|.|.||+|||||++++.+|..+|.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 35889999999999999999999999987
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.09 E-value=0.0023 Score=63.85 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcEEEEe
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~i~v~ 234 (426)
+.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345789999999999999999999987776554
No 302
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.09 E-value=0.0097 Score=61.53 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC---CcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l~ 239 (426)
+.-|+|.|.||+||||+++.+|..++ .....++..++.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 45689999999999999999999874 444455555443
No 303
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.07 E-value=0.04 Score=52.52 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=45.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh--------h-----cchHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY--------V-----GEGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-------~~--------~-----g~~~~~v~~lf~~a 257 (426)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... .+ . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999864 45555554321100 00 0 01223345566666
Q ss_pred HcCCCEEEEEeCCCcc
Q 014332 258 RSKKACIVFFDEVDAI 273 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (426)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5456779999987544
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.04 E-value=0.0048 Score=55.52 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
..++-+.|.||+|+|||+|+++++....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456789999999999999999998764
No 305
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.013 Score=61.70 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++..+-|.||+|+|||||++.++..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456679999999999999999999854
No 306
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.01 E-value=0.015 Score=66.75 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+-|+||+|+|||||++.+.+-.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45778889999999999999999999854
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.98 E-value=0.0037 Score=60.16 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.2
Q ss_pred hCCCCCCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
+.++++..+.|+||+|+|||||++.++..+...
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 356788889999999999999999999987333
No 308
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.95 E-value=0.0037 Score=56.17 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
+.++..+.|.||+|+|||||+++++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35566789999999999999999999764
No 309
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.92 E-value=0.011 Score=60.75 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhhh----------------h----hcchHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----------------Y----VGEGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~~----------------~----~g~~~~~v~~lf~~a 257 (426)
.+..|+|.|+||+||||++..+|..+ |..+..+++...... + .......+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999765 555555555211000 0 011222334455555
Q ss_pred HcCCCEEEEEeCCCcc
Q 014332 258 RSKKACIVFFDEVDAI 273 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (426)
......++|||-.-.+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5455669999876554
No 310
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.91 E-value=0.01 Score=57.60 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999865
No 311
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.90 E-value=0.013 Score=59.21 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
++..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999999865 4555555543
No 312
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.89 E-value=0.012 Score=53.59 Aligned_cols=30 Identities=20% Similarity=0.036 Sum_probs=22.9
Q ss_pred ceEecCCCChHHHHHHHHHHhc---CCcEEEEe
Q 014332 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l---~~~~i~v~ 234 (426)
.+++||.|+|||+.+-.++... +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5589999999999998888754 55555554
No 313
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.88 E-value=0.026 Score=54.34 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=34.3
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHHhhC----CCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG----IDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g----~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+|++++-.+...+.|.+.- +..+-.++... +...+.+++.+|+|+|||+.+-..+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKG---FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 46777766666666665532 11111112111 122368999999999999987655543
No 314
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.88 E-value=0.0036 Score=57.89 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=25.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 445558899999999999999999987654
No 315
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.87 E-value=0.017 Score=59.96 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|+|||||+++++...
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566779999999999999999999854
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.86 E-value=0.015 Score=55.66 Aligned_cols=72 Identities=19% Similarity=0.084 Sum_probs=46.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh------------h-cchHHHHHHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY------------V-GEGARMVRELFQMAR 258 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-------~~------------~-g~~~~~v~~lf~~a~ 258 (426)
+..+++.|++|+|||+++..+|..+ +..+..+++..... .+ . ......+...++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999765 55666565532110 00 0 112334456666666
Q ss_pred cCCCEEEEEeCCCcc
Q 014332 259 SKKACIVFFDEVDAI 273 (426)
Q Consensus 259 ~~~p~Il~iDEiD~l 273 (426)
.....+++||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 566679999975443
No 317
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.85 E-value=0.031 Score=62.37 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCcceEecCCCChHHHHHHHHHH-----hcCCcE----EE----------Eecchhhhhhhcch-HHHHHHHHHHHHcCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVAN-----RTDACF----IR----------VIGSELVQKYVGEG-ARMVRELFQMARSKK 261 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~-----~l~~~~----i~----------v~~~~l~~~~~g~~-~~~v~~lf~~a~~~~ 261 (426)
+..++|+||.|+||||++|.++- +.|+.+ .. +...+......... ..+.+-....+....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~ 868 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATA 868 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCC
Confidence 46799999999999999999943 223211 01 11111110000000 011111222334577
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChH-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNE-VQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~-~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
|++|++||+-+-. +.. ....+..++..+. ...+..+|++|+..+
T Consensus 869 ~sLlLLDEp~~Gt----------d~~dg~~~~~~il~~L~---~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 869 HSLVLVDELGRGT----------ATFDGTAIANAVVKELA---ETIKCRTLFSTHYHS 913 (1022)
T ss_dssp TCEEEEECTTTTS----------CHHHHHHHHHHHHHHHH---HTSCCEEEEECCCHH
T ss_pred CcEEEEECCCCCC----------ChHHHHHHHHHHHHHHH---hcCCCEEEEEeCCHH
Confidence 8999999985521 332 2344556666553 123567888998754
No 318
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.82 E-value=0.0046 Score=59.43 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456679999999999999999999865
No 319
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.82 E-value=0.025 Score=56.22 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=31.7
Q ss_pred CCC--EEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 260 KKA--CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 260 ~~p--~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
..| .+|+|||.++=. +......+.++|..+. .+..||++|+.++
T Consensus 312 ~~~~~~~LlLDEpt~~L----------D~~~~~~l~~~L~~l~-----~~~~vi~itH~~~ 357 (415)
T 4aby_A 312 LGADTPSVVFDEVDAGI----------GGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQ 357 (415)
T ss_dssp HCCSSSEEEESSTTTTC----------CHHHHHHHHHHHHHHT-----TTSEEEEECSCHH
T ss_pred hCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHh-----CCCEEEEEeCcHH
Confidence 445 799999987643 6777888888888763 1456777888653
No 320
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.78 E-value=0.036 Score=59.29 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCccccccCcHHHHHHHHHH-HhcCccChhHHHhhCCCCCCcceEecCCCChHHHHHHHH
Q 014332 164 DVTYNDVGGCKEQIEKMREV-VELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 222 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~-i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~laral 222 (426)
+.+|++++-.+...+.+.+. +..+..++...-...+.....+++.||+|+|||+.+-..
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 35677776444444444331 111111111111122455788999999999999998443
No 321
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.78 E-value=0.029 Score=49.66 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.6
Q ss_pred CCcceEecCCCChHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARA 221 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~lara 221 (426)
.+.+++.+|+|+|||..+-.
T Consensus 40 ~~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp TCCEEEECCSSSTTHHHHHH
T ss_pred CCCEEEECCCCCchHHHHHH
Confidence 46899999999999976553
No 322
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.78 E-value=0.017 Score=58.28 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc----CCcEEEEecchhhhhhh-----------------c---chHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYV-----------------G---EGARMVRELFQ 255 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~~l~~~~~-----------------g---~~~~~v~~lf~ 255 (426)
.+++.+++.|++|+||||++-.+|..+ |..+..+++........ + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346789999999999999999999754 66677676653211100 0 12333456677
Q ss_pred HHHcCCCEEEEEeCCCc
Q 014332 256 MARSKKACIVFFDEVDA 272 (426)
Q Consensus 256 ~a~~~~p~Il~iDEiD~ 272 (426)
.++.....+++||=.-.
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 77655567999987543
No 323
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.033 Score=57.77 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 251 ~~lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
+-.+..|....|.+|++||--+- -|...+..+.+++..+. ...+..||++|+..+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~g----------LD~~~~~~i~~~l~~l~---~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSY----------LDVEERYIVAKAIKRVT---RERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 44556666788999999995443 36777777888877653 123456777777643
No 324
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.74 E-value=0.0056 Score=64.55 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l 238 (426)
.+..|+|.|+||+||||+|++++..+ +.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34569999999999999999999998 999998876544
No 325
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.74 E-value=0.0052 Score=56.17 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.+++.-+.|.||+|+|||||+++++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45667799999999999999999998754
No 326
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.73 E-value=0.0056 Score=56.40 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=28.2
Q ss_pred cceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~ 240 (426)
.+-|.||||+||||+++.++..++.+++. ..+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is--~gdllR 44 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS--TGDMLR 44 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC--HHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee--chHHHH
Confidence 46789999999999999999999988764 444443
No 327
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.022 Score=59.06 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 253 lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
.+..|....|.||++||--+- -+...+..+.+++..+.. +..||++|++.
T Consensus 148 ~iA~aL~~~p~illlDEPts~----------LD~~~~~~l~~~l~~l~~-----g~tii~vsHdl 197 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSY----------LDVRERMNMAKAIRELLK-----NKYVIVVDHDL 197 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHCT-----TSEEEEECSCH
T ss_pred HHHHHHHcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHhC-----CCEEEEEEeCh
Confidence 344555678899999996543 267777788888887741 35577777664
No 328
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.65 E-value=0.032 Score=56.04 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=45.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhhh-------hh----------hc---chHHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-------KY----------VG---EGARMVRELFQMA 257 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~~-------~~----------~g---~~~~~v~~lf~~a 257 (426)
++..+++.||+|+||||++..+|..+ +..+..+++..... .+ .+ .........++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999865 44555555432110 00 00 1123345666666
Q ss_pred HcCCCEEEEEeCCCcc
Q 014332 258 RSKKACIVFFDEVDAI 273 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l 273 (426)
+.....+++||=.-.+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5555679999865443
No 329
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.64 E-value=0.0032 Score=60.12 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
..+.-+.|.||+|+||||+++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456688999999999999999999775
No 330
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.63 E-value=0.0056 Score=60.29 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456679999999999999999999865
No 331
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.62 E-value=0.003 Score=57.72 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHH-Hhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVA-NRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA-~~l 226 (426)
+.++.-+.|.||+|+||||+++.++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456678999999999999999999 765
No 332
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.61 E-value=0.0026 Score=57.00 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred cceEecCCCChHHHHHHHHHHhcC
Q 014332 204 GVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l~ 227 (426)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 333
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.60 E-value=0.03 Score=60.03 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.1
Q ss_pred CCCCcceEecCCCChHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLAR 220 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~lar 220 (426)
...+.+++.||+|+|||+.+-
T Consensus 37 ~~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 37 LEGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GGTCEEEEECCGGGCHHHHHH
T ss_pred cCCCcEEEEcCCccHHHHHHH
Confidence 346789999999999999873
No 334
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.60 E-value=0.042 Score=50.50 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=36.5
Q ss_pred CcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc-------hhhhhhhcch-----HHHHHHHHHHHHcCCCEEEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS-------ELVQKYVGEG-----ARMVRELFQMARSKKACIVFF 267 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~-------~l~~~~~g~~-----~~~v~~lf~~a~~~~p~Il~i 267 (426)
.-.++|||.|+|||+.+-..+... +..++.+... .+.+.. |.. -....++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 447788999999997776666543 4444444311 111110 000 00002244444 34569999
Q ss_pred eCCCcc
Q 014332 268 DEVDAI 273 (426)
Q Consensus 268 DEiD~l 273 (426)
||+..+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999988
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.58 E-value=0.082 Score=47.04 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l 226 (426)
....++|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
No 336
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.54 E-value=0.0079 Score=53.27 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.1
Q ss_pred ceEecCCCChHHHHHHHHHHhcCCcEEEEecch
Q 014332 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l~~~~i~v~~~~ 237 (426)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 87888877654
No 337
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.54 E-value=0.0072 Score=55.41 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=27.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEE
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~ 232 (426)
..|.|.|++|||||++++.+|..+|.+|+-
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999853
No 338
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.49 E-value=0.11 Score=52.91 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=24.7
Q ss_pred CcceEecCCCChHHHHHHHHHHhc--------CCcEEEEecc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIGS 236 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l--------~~~~i~v~~~ 236 (426)
+.+++.+|+|+|||..+-..+.+. +...+.+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 579999999999999877666443 4555555443
No 339
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.49 E-value=0.0072 Score=55.50 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC--CcEEEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRV 233 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v 233 (426)
.+.-+.|.||||+||||+++.++..++ ..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 445688899999999999999999886 355433
No 340
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.48 E-value=0.014 Score=52.96 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCCCccccccCc-HHHHHHHHHHHhcCccChhHHHhhC---CCCCCcceEecCCCChHHHHHHH
Q 014332 162 KPDVTYNDVGGC-KEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARA 221 (426)
Q Consensus 162 ~~~~~~~di~G~-~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~lara 221 (426)
.|..+|.+..++ ....+.+.+.- +..|-.++... +...+.+++.+|+|+|||..+-.
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVG---ILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 345677774343 44445554431 22222222211 12356899999999999986543
No 341
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.46 E-value=0.037 Score=54.26 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCccccccCcHHHHHHHHHHHhcCccChhHHHhhCC---CCCCcceEecCCCChHHHHHHHHH
Q 014332 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVA 223 (426)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---~~~~~vLL~GppGtGKT~laralA 223 (426)
+..+|++++-.+...+.|.+.- +..+-.++...+ ...+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 4457888876666666665421 122222221111 124679999999999998765444
No 342
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.43 E-value=0.075 Score=55.89 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++..+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3456679999999999999999999754
No 343
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.37 E-value=0.026 Score=62.33 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHH
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~ 224 (426)
+.++..+.|.||+|+|||||++.++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667799999999999999999994
No 344
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.37 E-value=0.0088 Score=52.57 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
..++||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999999874
No 345
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.37 E-value=0.046 Score=59.06 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
+..++|.||+|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456899999999999999999863
No 346
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.29 E-value=0.039 Score=51.01 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
+..|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346999999999999999999864
No 347
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.29 E-value=0.0068 Score=57.82 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=25.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC---CcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~---~~~i~v~~~~l~ 239 (426)
+.-|.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34588999999999999999999775 334555555443
No 348
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.27 E-value=0.0053 Score=56.71 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4567779999999999999999999854
No 349
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.25 E-value=0.025 Score=64.69 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++++..+.|.||+|+|||||++.++...
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677889999999999999999999865
No 350
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.25 E-value=0.0051 Score=56.90 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34667789999999999999999999854
No 351
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.23 E-value=0.039 Score=53.62 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=32.8
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHH-----hhCCCCCCcceEecCCCChHHHHHHHHH
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFV-----KLGIDPPKGVLCYGPPGTGKTLLARAVA 223 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~-----~~g~~~~~~vLL~GppGtGKT~laralA 223 (426)
.+|++++-.....+.+...- +..|-.++ .+--..++.+++.+|+|+|||..+-..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMK---FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 36777766666666665521 12222122 1111234789999999999998765443
No 352
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.22 E-value=0.028 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
...++|+||+|+|||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4569999999999999999988753
No 353
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.12 E-value=0.088 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=23.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.+..|+|.|.||+|||++++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345699999999999999999999864
No 354
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.12 E-value=0.0099 Score=62.21 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC----CcEEEEecchh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL 238 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~----~~~i~v~~~~l 238 (426)
+..|+|.|+||+||||+|++++..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 45689999999999999999999886 77888876554
No 355
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.11 E-value=0.0051 Score=56.36 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566678999999999999999999854
No 356
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.10 E-value=0.019 Score=59.66 Aligned_cols=41 Identities=32% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC----CcEEEEecchhhh
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSELVQ 240 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~----~~~i~v~~~~l~~ 240 (426)
.++..+.|.|++|+||||+++++|..++ ..+..+++..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 3456689999999999999999999874 3455577766543
No 357
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.09 E-value=0.037 Score=53.87 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.....+.|.||||+|||||.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455568899999999999999999754
No 358
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.06 E-value=0.076 Score=53.29 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.5
Q ss_pred CCcceEecCCCChHHHHH-HHHH
Q 014332 202 PKGVLCYGPPGTGKTLLA-RAVA 223 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~la-ralA 223 (426)
.+.+|+.||+|+|||..+ -++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999976 4444
No 359
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.05 E-value=0.01 Score=57.21 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=24.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
..++.-+.|.||+|+|||||++.++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3455668899999999999999999876
No 360
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.04 E-value=0.21 Score=48.45 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=32.6
Q ss_pred ccccccCcHHHHHHHHHHHhcCccChhHHHhhC---CCCCCcceEecCCCChHHHHHHHHHH
Q 014332 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~laralA~ 224 (426)
+|+++.-.....+.|.+.- +..+-.++... +...+.+++.+|+|+|||..+-..+-
T Consensus 9 ~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHS---CCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 5677755566666665531 22222222211 12346799999999999987655444
No 361
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.04 E-value=0.093 Score=55.19 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.++..+.|.||.|+|||||+++++...
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456679999999999999999999854
No 362
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.03 E-value=0.03 Score=47.32 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=19.1
Q ss_pred cceEecCCCChHHHHHHHHHH
Q 014332 204 GVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~ 224 (426)
.+++.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999965
No 363
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.02 E-value=0.0066 Score=57.04 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||+++++...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999854
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.99 E-value=0.0092 Score=57.30 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.9
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
..+.-+.|.||+|+|||||++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445688999999999999999999765
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.99 E-value=0.0076 Score=55.86 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.+ ..+.|.||+|+|||||++.++...
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 778999999999999999999854
No 366
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.97 E-value=0.0063 Score=55.43 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.3
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||+++++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566779999999999999999999854
No 367
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.96 E-value=0.1 Score=51.67 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+..+..++|.||+|+|||+|++.+++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4456779999999999999999998854
No 368
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.95 E-value=0.046 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l 226 (426)
....|.|.|+||+|||+++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998765
No 369
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.94 E-value=0.014 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l 226 (426)
....+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568999999999999999999864
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.93 E-value=0.013 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l 226 (426)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 371
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.87 E-value=0.0096 Score=56.07 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=24.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+.++..+.|.||+|+|||||++.++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456777999999999999999999985
No 372
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.86 E-value=0.0076 Score=56.53 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34667789999999999999999999854
No 373
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.86 E-value=0.0065 Score=56.31 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566679999999999999999999853
No 374
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.86 E-value=0.0067 Score=56.75 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=34.9
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
-...|.+|++||--+- -|......+.+++..+. .. +..||++|+..+.+
T Consensus 168 L~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAG----------VAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTT
T ss_pred HHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 3467889999996543 37778888888887763 12 45688888877654
No 375
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.83 E-value=0.0084 Score=56.39 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.9
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||++.++...
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34566779999999999999999999864
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.81 E-value=0.008 Score=55.98 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
+.++..+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456677999999999999999999985
No 377
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.80 E-value=0.007 Score=55.63 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.5
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567779999999999999999999864
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.79 E-value=0.016 Score=53.27 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
|.-+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999984
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.77 E-value=0.016 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcC
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.-.+|+||.|+|||+++++|+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999998764
No 380
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.77 E-value=0.14 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=16.5
Q ss_pred CcceEecCCCChHHH-HHHHHHH
Q 014332 203 KGVLCYGPPGTGKTL-LARAVAN 224 (426)
Q Consensus 203 ~~vLL~GppGtGKT~-laralA~ 224 (426)
.-.+++||-|+|||+ |.+.+.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999 5555543
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.74 E-value=0.025 Score=54.68 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.|.-+.|.||+|+||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344688999999999999999998765
No 382
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.72 E-value=0.0086 Score=56.33 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=34.9
Q ss_pred HcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 014332 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (426)
Q Consensus 258 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~~l 320 (426)
-...|.+|++||--+- -|......+.+++..+. .. +..||++|+.++.+
T Consensus 153 L~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 153 IVHEPDILILDEPLVG----------LDREGKTDLLRIVEKWK---TL-GKTVILISHDIETV 201 (266)
T ss_dssp HTTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTT
T ss_pred HHcCCCEEEEcCcccc----------CCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 3466889999996553 37778888888887763 12 45688888877654
No 383
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.71 E-value=0.0073 Score=56.39 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcC
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
.+.-|.|.|++|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 455689999999999999999999983
No 384
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.70 E-value=0.0079 Score=55.68 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566678999999999999999999854
No 385
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.69 E-value=0.022 Score=51.63 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.7
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEecchhhhh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~~l~~~ 241 (426)
-.|-|+|..|||||++++.++. +|.+++ ++..+...
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~ 45 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHR 45 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHH
Confidence 4688999999999999999998 888875 45444433
No 386
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.69 E-value=0.066 Score=52.63 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCccccccCcHHHHHHHHHHHhcCccChhHHHhhC---CCCCCcceEecCCCChHHHHHHHHH
Q 014332 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVA 223 (426)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~laralA 223 (426)
..+|++++-.+...+.|...- +..|-.++... +-..+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 346888866666666665532 22222222211 1134679999999999997765443
No 387
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.67 E-value=0.022 Score=60.96 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=18.5
Q ss_pred CCCcceEecCCCChHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAV 222 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laral 222 (426)
..+.+++.||+|+|||+.+-..
T Consensus 39 ~~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 39 SGKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp TCSCEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHHHH
Confidence 4678999999999999988433
No 388
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.11 Score=54.58 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=34.0
Q ss_pred HHHHHHcCCCEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 253 lf~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
.+..|....|.+|++||--+ +-|...+..+.+++..+. ...+..||++|+..+
T Consensus 477 ~iAraL~~~p~lLlLDEPT~----------gLD~~~~~~i~~ll~~l~---~~~g~tviivtHdl~ 529 (608)
T 3j16_B 477 AIVLALGIPADIYLIDEPSA----------YLDSEQRIICSKVIRRFI---LHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHTTSCCSEEEECCTTT----------TCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHhCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 44455567889999999543 236777777777776652 112345777887643
No 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.66 E-value=0.0079 Score=56.09 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566678999999999999999999865
No 390
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.62 E-value=0.06 Score=61.59 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
++++..+-|.||+|+|||||++.++...
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4567779999999999999999999853
No 391
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.57 E-value=0.019 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=22.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
...+.|.|++|+|||+++..++..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999875
No 392
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.56 E-value=0.022 Score=57.44 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=20.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~ 225 (426)
..+-.++.|+||||||++.+.++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445789999999999999988753
No 393
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.55 E-value=0.0085 Score=55.97 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566679999999999999999999864
No 394
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.54 E-value=0.0087 Score=56.77 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566679999999999999999999854
No 395
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.53 E-value=0.011 Score=53.49 Aligned_cols=25 Identities=44% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~ 225 (426)
++..+.|.||+|+|||||+++++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3556889999999999999999974
No 396
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.50 E-value=0.13 Score=44.53 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.8
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|++.|++|+|||+|+.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 397
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.48 E-value=0.063 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
...|+|.|++|+|||+|+.++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 346999999999999999999874
No 398
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.48 E-value=0.032 Score=56.33 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=30.1
Q ss_pred CcceEecCCCChHHHHHHHHHHhcCCcEEEEecc-hhh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELV 239 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~~~~i~v~~~-~l~ 239 (426)
..+++.||+|+|||..+-.++...+...+.+.+. .+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 3599999999999999999988888777777655 443
No 399
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.46 E-value=0.011 Score=58.13 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=46.2
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcC--CcEEEEecc-hhhh----h---hhc-c-------hHHHHHHHHHHHHcC
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-ELVQ----K---YVG-E-------GARMVRELFQMARSK 260 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~--~~~i~v~~~-~l~~----~---~~g-~-------~~~~v~~lf~~a~~~ 260 (426)
+.+...++|.||+|+|||||+++++.... ...+.+... ++.. . ++. + ....++..+..+...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 45677899999999999999999998763 334444432 1110 0 111 0 111244556666667
Q ss_pred CCEEEEEeCCCc
Q 014332 261 KACIVFFDEVDA 272 (426)
Q Consensus 261 ~p~Il~iDEiD~ 272 (426)
.|..++++|+..
T Consensus 252 ~pd~~l~~e~r~ 263 (361)
T 2gza_A 252 KPTRILLAELRG 263 (361)
T ss_dssp CCSEEEESCCCS
T ss_pred CCCEEEEcCchH
Confidence 788888888653
No 400
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.42 E-value=0.3 Score=43.18 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|+|.|++|+|||+|++++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 401
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.41 E-value=0.03 Score=59.20 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.8
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999988777654
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.039 Score=48.08 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.....+++.|++|+|||+|+.++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345579999999999999999998753
No 403
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.38 E-value=0.2 Score=49.53 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=27.7
Q ss_pred cceEecCCCChHHHHHHHHHHhc----CCcEEEEecc-hhhh
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS-ELVQ 240 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l----~~~~i~v~~~-~l~~ 240 (426)
++++.+|+|+|||..+-+++... +...+.+... .+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~ 66 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 79999999999999998887654 5566666553 4433
No 404
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.072 Score=59.99 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
.+.+|+.||+|+|||+.+-..+... +...+.+.+
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 4689999999999999876555443 444444443
No 405
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.34 E-value=0.073 Score=48.58 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.1
Q ss_pred CCcceEecCCCChHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLAR 220 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~lar 220 (426)
.+.+++.+|+|+|||..+-
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 4679999999999998643
No 406
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.24 E-value=0.019 Score=56.38 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.6
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5568999999999999999999987654
No 407
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.24 E-value=0.075 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=20.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.+++.+|+|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 4568999999999999988777653
No 408
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.22 E-value=0.011 Score=58.05 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.+...+.|.||+|||||||++.+|...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566678999999999999999999853
No 409
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.16 E-value=0.013 Score=55.89 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.4
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.++..+.|.||+|+|||||++.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566779999999999999999999854
No 410
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.13 E-value=0.36 Score=49.21 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=24.6
Q ss_pred CcceEecCCCChHHHHHHHHHHhc--------CCcEEEEecc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIGS 236 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l--------~~~~i~v~~~ 236 (426)
+.+++.+|+|+|||..+-..+... +...+.+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 569999999999999877666443 4555555443
No 411
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.11 E-value=0.017 Score=57.54 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+.+...+.|.||+|||||||+++++..
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3466778999999999999999999974
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.10 E-value=0.095 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CcceEecCCCChHHHHHHHHHHhc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l 226 (426)
-.|+|.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999888754
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.09 E-value=0.048 Score=49.57 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=25.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
.+.-|.|.|++|+||||+++.+++.++...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 355688999999999999999999998643
No 414
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.04 E-value=0.11 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
...+++.|++|+|||+|++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999864
No 415
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.01 E-value=0.11 Score=55.13 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=30.7
Q ss_pred CEEEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014332 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (426)
Q Consensus 262 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~~ 318 (426)
|.+|++||--+- -+......+.+++..+.. .+..||++|+..+
T Consensus 565 p~llllDEPt~~----------LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDEPTTG----------LHVDDIARLLDVLHRLVD----NGDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEESTTTT----------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 569999996443 377778888888877641 2456888888654
No 416
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.00 E-value=0.026 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.4
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999985
No 417
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.99 E-value=0.025 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 418
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.98 E-value=0.02 Score=58.85 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=24.3
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDA 228 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~ 228 (426)
+..++|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999874
No 419
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.93 E-value=0.029 Score=50.22 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~ 227 (426)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998753
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.93 E-value=0.043 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=19.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.-|.|.||+|+||||+++.++..+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458888999999999999999976
No 421
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.93 E-value=0.11 Score=50.47 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.....+.|.|+||+|||+++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999998754
No 422
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.93 E-value=0.018 Score=50.47 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.5
Q ss_pred CcceEecCCCChHHHHHHHHHHhcC-----CcEEEEecch
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIGSE 237 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l~-----~~~i~v~~~~ 237 (426)
..+.|.||+|+|||||++.++..+. .-.+.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 3578999999999999999998763 2345555443
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.026 Score=57.43 Aligned_cols=29 Identities=28% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
.+.++..+.|.||+|+|||||+|.++...
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45667789999999999999999999854
No 424
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.87 E-value=0.3 Score=42.36 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
.|+|.|++|+|||+|++.+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999999753
No 425
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.86 E-value=0.017 Score=54.26 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=23.6
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l 226 (426)
+. +..+.|.||+|+|||||++.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 6678999999999999999999864
No 426
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.85 E-value=0.025 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.6
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
.+.|.||+|+|||||+++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 427
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.83 E-value=0.087 Score=48.96 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.2
Q ss_pred CcceEecCCCChHHHHHHH
Q 014332 203 KGVLCYGPPGTGKTLLARA 221 (426)
Q Consensus 203 ~~vLL~GppGtGKT~lara 221 (426)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987543
No 428
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.81 E-value=0.089 Score=54.61 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecchhh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~~l~ 239 (426)
+..++|+|++|+||||+++.++..+ |.++..+++..+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 4568999999999999999999976 4566777765543
No 429
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.79 E-value=0.15 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
...|++.|++|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999874
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.77 E-value=0.03 Score=50.80 Aligned_cols=32 Identities=25% Similarity=0.154 Sum_probs=25.3
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc---CCcEEEE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRV 233 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l---~~~~i~v 233 (426)
+.-|.|.|++|+||||+++.++..+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457888999999999999999977 3455444
No 431
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.70 E-value=0.15 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
+.-|.|.|+||+|||+|..++...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 345899999999999999999874
No 432
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.69 E-value=0.22 Score=50.22 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=32.6
Q ss_pred CccccccCcHHHHHHHHHHHhcCccChhHHH-----hhCCCCCCcceEecCCCChHHHHH-HHHHH
Q 014332 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFV-----KLGIDPPKGVLCYGPPGTGKTLLA-RAVAN 224 (426)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~-----~~g~~~~~~vLL~GppGtGKT~la-ralA~ 224 (426)
.+|.++.-.+...+.|... .+..|-.++ .+-...++.+++.||+|+|||..+ -.+..
T Consensus 92 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 4677776666656655542 122222111 111124578999999999999874 33443
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.68 E-value=0.051 Score=54.85 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=29.1
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCc--EEEEecc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGS 236 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~--~i~v~~~ 236 (426)
+.....+.|.||+|+|||+|++.+++..... .+.+.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4556679999999999999999999987543 3444443
No 434
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.65 E-value=0.31 Score=44.82 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
...|+|.|++|+|||+|..++...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999864
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.64 E-value=0.034 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999876
No 436
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.60 E-value=0.035 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+++.|++|+|||+|++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
No 437
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.59 E-value=0.051 Score=59.04 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.8
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999988877664
No 438
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.58 E-value=0.37 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=19.5
Q ss_pred CCcceEecCCCChHHHHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~ 224 (426)
.+.+++.+|+|+|||+.+-.++.
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHH
Confidence 35799999999999998877665
No 439
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.53 E-value=0.17 Score=53.76 Aligned_cols=50 Identities=4% Similarity=0.071 Sum_probs=31.7
Q ss_pred HHHHHcCCCE--EEEEeCCCcccCCccCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014332 254 FQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (426)
Q Consensus 254 f~~a~~~~p~--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v~vI~atn~~ 317 (426)
+..|....|. +|++||--+- -++..+..+.+++..+.. .+..||++|+..
T Consensus 213 iArAL~~~p~~~lLlLDEPtsg----------LD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~ 264 (670)
T 3ux8_A 213 LATQIGSRLTGVLYVLDEPSIG----------LHQRDNDRLIATLKSMRD----LGNTLIVVEHDE 264 (670)
T ss_dssp HHHHHHTCCCSCEEEEECTTTT----------CCGGGHHHHHHHHHHHHH----TTCEEEEECCCH
T ss_pred HHHHHhhCCCCCEEEEECCccC----------CCHHHHHHHHHHHHHHHH----cCCEEEEEeCCH
Confidence 3344445666 9999996443 256666777777776641 245577777764
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.51 E-value=0.23 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.6
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|++.|++|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999863
No 441
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.51 E-value=0.065 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.6
Q ss_pred cceEecCCCChHHHHHHHHHHhc
Q 014332 204 GVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~l 226 (426)
-++|.|+.|+||||+++.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999754
No 442
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.50 E-value=0.046 Score=53.40 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCCCCcceEecCCCChHHHHHHHHHHhcCCc
Q 014332 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (426)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~laralA~~l~~~ 229 (426)
+....-+.|.||+|+|||+|++.+++.....
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3456679999999999999999999987544
No 443
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.49 E-value=0.09 Score=49.07 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 444
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.47 E-value=0.061 Score=48.27 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
...++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568889999999999999999875
No 445
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.43 E-value=0.038 Score=46.56 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.6
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.+++.|++|+|||+|++++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 446
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.41 E-value=0.071 Score=52.67 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEec
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~ 235 (426)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46689999999999999999998754 555655553
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.36 E-value=0.039 Score=46.96 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHhc
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l 226 (426)
.-.+|+||.|+|||++..|++-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998654
No 448
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.35 E-value=0.34 Score=52.41 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhc---CCcEEEEecc
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l---~~~~i~v~~~ 236 (426)
.+..+|+.||+|+|||..+-..+-.. +...+.+...
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 34689999999999999886655433 5555555443
No 449
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.33 E-value=0.32 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|+|.|++|+|||+|+.++...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 450
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.33 E-value=0.042 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 451
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.32 E-value=0.039 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.2
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+++.|++|+|||+|+++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.21 E-value=0.041 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.9
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+.|.|++|+|||+|.+.++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999863
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.19 E-value=0.034 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred cceEecCCCChHHHHHHHHHH
Q 014332 204 GVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~ 224 (426)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 454
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.17 E-value=0.039 Score=55.45 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=22.9
Q ss_pred CCCCCCc--ceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKG--VLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~--vLL~GppGtGKT~laralA~~ 225 (426)
.+.++.. +.|.||+|+|||||+++++..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3455556 889999999999999999875
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.16 E-value=0.039 Score=48.59 Aligned_cols=25 Identities=12% Similarity=0.208 Sum_probs=21.4
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~ 225 (426)
....|++.|++|+|||+|++++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999999864
No 456
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.14 E-value=0.044 Score=50.15 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCC
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDA 228 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~ 228 (426)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445788899999999999999997644
No 457
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.14 E-value=0.045 Score=46.12 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=20.0
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.14 E-value=0.044 Score=49.96 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEE
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i 231 (426)
++.-+.|.||.|+||||+++.++.. +..+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 3445889999999999999999987 44333
No 459
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.13 E-value=0.046 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 460
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.09 E-value=0.051 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCcceEecCCCChHHHHHHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~ 224 (426)
....|++.|++|+|||+|++++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999986
No 461
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.08 E-value=0.048 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 462
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.03 E-value=0.02 Score=50.78 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=23.2
Q ss_pred CCCCCCcceEecCCCChHHHHHHHHHHh
Q 014332 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~laralA~~ 225 (426)
.+.+...+.|.|++|+|||+|+++++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4455566999999999999999998754
No 463
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.02 E-value=0.049 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|++.|++|+|||+|++++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 464
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.01 E-value=1 Score=47.63 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=23.7
Q ss_pred CCCcceEecCCCChHHHHHHHHHHhcCCcEEEEec
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~l~~~~i~v~~ 235 (426)
..+.+++.||+|+|||+.+-..+-+-+...+.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 34569999999999997665544444544555544
No 465
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.00 E-value=0.047 Score=46.43 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.4
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|++.|++|+|||+|++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999864
No 466
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.97 E-value=0.05 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 467
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.93 E-value=0.048 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 468
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.91 E-value=0.051 Score=46.42 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
...|++.|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 469
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.047 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 470
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.87 E-value=0.055 Score=49.05 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCcceEecCCCChHHHHHHHHHHhc
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l 226 (426)
+.-|.|.|++|+||||+++.++..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999876
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.85 E-value=0.046 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..+.|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 472
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.82 E-value=0.16 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.9
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+.|.|+||+|||+|.++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3889999999999999999864
No 473
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.82 E-value=0.06 Score=51.79 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCcceEecCCCChHHHHHHHHHHhcCCcE
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANRTDACF 230 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~l~~~~ 230 (426)
..+++|.|++|+|||++|.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 578999999999999999999875 4443
No 474
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.76 E-value=0.056 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~ 225 (426)
....|++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999863
No 475
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=92.76 E-value=0.024 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.0
Q ss_pred ceEecCCCChHHHHHHHHHHhc
Q 014332 205 VLCYGPPGTGKTLLARAVANRT 226 (426)
Q Consensus 205 vLL~GppGtGKT~laralA~~l 226 (426)
+.|.||+|+|||+|+++++..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5688999999999999999876
No 476
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.76 E-value=0.055 Score=45.56 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.1
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 477
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.74 E-value=0.056 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.1
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 478
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.71 E-value=0.057 Score=47.34 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=23.4
Q ss_pred HhhCCCCCCcceEecCCCChHHHHHHHHHH
Q 014332 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 195 ~~~g~~~~~~vLL~GppGtGKT~laralA~ 224 (426)
.++.-.....|++.|++|+|||+|++.+..
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 333334455799999999999999999964
No 479
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.076 Score=57.72 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=17.6
Q ss_pred cceEecCCCChHHHHHHHHHH
Q 014332 204 GVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~ 224 (426)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 579999999999998776654
No 480
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.67 E-value=0.057 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|++.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 481
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.65 E-value=0.057 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|+|.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 482
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.64 E-value=0.059 Score=45.32 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.+++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.64 E-value=0.055 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.0
Q ss_pred cceEecCCCChHHHHHHHHHH
Q 014332 204 GVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~ 224 (426)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999974
No 484
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.63 E-value=0.065 Score=46.61 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCcceEecCCCChHHHHHHHHHHh
Q 014332 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~laralA~~ 225 (426)
....+++.|++|+|||+|+.++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999999864
No 485
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.57 E-value=0.046 Score=47.13 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.1
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
...+.|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999874
No 486
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.57 E-value=0.57 Score=48.16 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.0
Q ss_pred CCCcceEecCCCChHHHHH
Q 014332 201 PPKGVLCYGPPGTGKTLLA 219 (426)
Q Consensus 201 ~~~~vLL~GppGtGKT~la 219 (426)
..+.+++.+|+|+|||..+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3568999999999999853
No 487
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.52 E-value=0.059 Score=45.91 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.5
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|++.|++|+|||+|++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 488
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.49 E-value=0.063 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 489
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.46 E-value=0.19 Score=46.72 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.0
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999864
No 490
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.45 E-value=0.062 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 491
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.43 E-value=0.064 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
..|++.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 492
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.41 E-value=0.11 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.0
Q ss_pred CCcceEecCCCChHHHHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~ 224 (426)
.+.+++.+|+|+|||+.+-..+.
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 46799999999999995544433
No 493
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.40 E-value=0.061 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999874
No 494
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.39 E-value=0.055 Score=46.51 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCCCcceEecCCCChHHHHHHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLARAVAN 224 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~laralA~ 224 (426)
.....|++.|++|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999874
No 495
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=92.37 E-value=0.85 Score=49.30 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=24.8
Q ss_pred CcceEecCCCChHHHHHHHHHHhc--------CCcEEEEec
Q 014332 203 KGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIG 235 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~l--------~~~~i~v~~ 235 (426)
+.+++.+|+|+|||..+-..+... +...+.+.+
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999999877766543 555555544
No 496
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.36 E-value=0.066 Score=46.48 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCcceEecCCCChHHHHHHHHHHh
Q 014332 202 PKGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~laralA~~ 225 (426)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999975
No 497
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.34 E-value=0.066 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred cceEecCCCChHHHHHHHHHHh
Q 014332 204 GVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 204 ~vLL~GppGtGKT~laralA~~ 225 (426)
.|++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 498
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.33 E-value=0.52 Score=47.30 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=17.3
Q ss_pred CCCCcceEecCCCChHHHHH
Q 014332 200 DPPKGVLCYGPPGTGKTLLA 219 (426)
Q Consensus 200 ~~~~~vLL~GppGtGKT~la 219 (426)
...+.+++.||+|+|||+.+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCEEEECCCTTSSTTTTH
T ss_pred hCCCCEEEEcCCCCCHHHHH
Confidence 35678999999999999975
No 499
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=92.33 E-value=0.17 Score=51.81 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.9
Q ss_pred CCcceEecCCCChHHHHHHH
Q 014332 202 PKGVLCYGPPGTGKTLLARA 221 (426)
Q Consensus 202 ~~~vLL~GppGtGKT~lara 221 (426)
++.+++.+|+|+|||..+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 47899999999999987443
No 500
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.31 E-value=0.067 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.7
Q ss_pred CcceEecCCCChHHHHHHHHHHh
Q 014332 203 KGVLCYGPPGTGKTLLARAVANR 225 (426)
Q Consensus 203 ~~vLL~GppGtGKT~laralA~~ 225 (426)
-.|+|.|++|+|||+|++++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999874
Done!