Query 014334
Match_columns 426
No_of_seqs 282 out of 1528
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i0w_A 8-oxoguanine-DNA-glycos 100.0 5.6E-41 1.9E-45 330.9 24.4 235 35-391 51-287 (290)
2 2jhn_A ALKA, 3-methyladenine D 100.0 5.8E-39 2E-43 316.9 23.3 255 7-395 28-291 (295)
3 2xhi_A N-glycosylase/DNA lyase 100.0 1.4E-38 4.8E-43 322.4 22.6 234 35-376 78-328 (360)
4 1mpg_A ALKA, 3-methyladenine D 100.0 1.3E-36 4.6E-41 298.0 23.4 243 11-391 32-277 (282)
5 4b21_A Probable DNA-3-methylad 100.0 5.1E-37 1.8E-41 294.1 17.0 200 78-391 19-227 (232)
6 3s6i_A DNA-3-methyladenine gly 100.0 1E-32 3.5E-37 263.5 16.3 169 116-392 40-217 (228)
7 2yg9_A DNA-3-methyladenine gly 100.0 2.4E-32 8.2E-37 260.4 15.8 163 116-393 54-219 (225)
8 2h56_A DNA-3-methyladenine gly 100.0 3.3E-30 1.1E-34 246.8 18.6 162 116-386 44-210 (233)
9 1kg2_A A/G-specific adenine gl 99.9 5.9E-24 2E-28 202.1 15.2 91 251-356 58-152 (225)
10 2abk_A Endonuclease III; DNA-r 99.9 5.9E-24 2E-28 200.1 15.0 106 251-371 57-168 (211)
11 1pu6_A 3-methyladenine DNA gly 99.9 3.2E-23 1.1E-27 196.5 16.9 143 121-368 28-176 (218)
12 1orn_A Endonuclease III; DNA r 99.9 6.1E-23 2.1E-27 195.6 17.7 106 251-371 61-173 (226)
13 1kea_A Possible G-T mismatches 99.9 1.9E-23 6.6E-28 198.2 12.1 91 251-356 63-158 (221)
14 3fsp_A A/G-specific adenine gl 99.9 8.8E-22 3E-26 199.1 17.0 155 251-422 67-238 (369)
15 3n5n_X A/G-specific adenine DN 99.8 9.8E-21 3.3E-25 186.5 14.8 100 251-365 77-183 (287)
16 3fhg_A Mjogg, N-glycosylase/DN 99.8 2.3E-20 7.8E-25 175.5 15.3 93 252-356 64-160 (207)
17 3n0u_A Probable N-glycosylase/ 99.8 1.8E-18 6.2E-23 164.3 12.8 104 255-370 76-195 (219)
18 3fhf_A Mjogg, N-glycosylase/DN 99.7 1.3E-17 4.3E-22 158.1 12.6 87 258-356 73-168 (214)
19 4e9f_A Methyl-CPG-binding doma 99.7 6.2E-17 2.1E-21 147.2 11.2 84 251-355 59-148 (161)
20 3vdp_A Recombination protein R 85.7 0.53 1.8E-05 44.2 3.7 30 307-336 20-50 (212)
21 2fmp_A DNA polymerase beta; nu 85.6 1.3 4.5E-05 43.9 6.7 57 264-330 57-115 (335)
22 1vdd_A Recombination protein R 84.1 0.67 2.3E-05 43.9 3.6 30 307-336 6-36 (228)
23 4glx_A DNA ligase; inhibitor, 82.2 1.9 6.4E-05 46.2 6.5 93 252-353 468-577 (586)
24 2bcq_A DNA polymerase lambda; 81.8 4.2 0.00014 40.3 8.5 49 266-330 26-74 (335)
25 2ihm_A POL MU, DNA polymerase 81.7 1.7 5.7E-05 43.6 5.6 56 266-330 63-119 (360)
26 2bcq_A DNA polymerase lambda; 80.4 2.7 9.1E-05 41.8 6.5 57 263-330 56-113 (335)
27 3b0x_A DNA polymerase beta fam 80.1 2.6 9E-05 44.5 6.7 71 255-336 44-116 (575)
28 1z00_B DNA repair endonuclease 79.8 1.4 4.9E-05 35.3 3.6 28 308-335 13-40 (84)
29 2ztd_A Holliday junction ATP-d 79.3 1.2 4.2E-05 41.6 3.5 16 314-329 124-139 (212)
30 1jms_A Terminal deoxynucleotid 78.8 2.3 8E-05 43.0 5.6 56 266-330 82-138 (381)
31 2a1j_A DNA repair endonuclease 77.7 1.4 4.9E-05 33.1 2.8 25 312-336 3-27 (63)
32 1ixr_A Holliday junction DNA h 77.4 1.5 5.2E-05 40.3 3.4 25 310-334 69-93 (191)
33 2ztd_A Holliday junction ATP-d 77.3 1.6 5.4E-05 40.9 3.5 21 310-330 85-105 (212)
34 1x2i_A HEF helicase/nuclease; 76.5 2.4 8.1E-05 31.9 3.8 23 312-334 45-67 (75)
35 2duy_A Competence protein come 76.4 1.4 4.8E-05 33.8 2.5 20 312-331 26-45 (75)
36 1cuk_A RUVA protein; DNA repai 74.4 2 6.8E-05 39.8 3.4 18 313-330 73-90 (203)
37 1x2i_A HEF helicase/nuclease; 74.3 2.8 9.7E-05 31.4 3.7 29 307-335 8-36 (75)
38 1z00_A DNA excision repair pro 72.7 3.9 0.00013 32.2 4.3 22 312-333 50-71 (89)
39 2csb_A Topoisomerase V, TOP61; 72.3 5 0.00017 39.2 5.7 52 278-337 384-435 (519)
40 1kft_A UVRC, excinuclease ABC 72.2 3.3 0.00011 31.9 3.7 22 312-333 55-76 (78)
41 2duy_A Competence protein come 72.1 1.5 5.2E-05 33.6 1.7 52 255-330 18-70 (75)
42 1z00_A DNA excision repair pro 70.4 3.6 0.00012 32.5 3.6 26 309-334 15-40 (89)
43 2edu_A Kinesin-like protein KI 69.4 9.3 0.00032 30.8 6.0 56 255-330 31-87 (98)
44 2a1j_B DNA excision repair pro 68.8 3.7 0.00013 32.6 3.4 23 312-334 63-85 (91)
45 2a1j_B DNA excision repair pro 68.7 3.9 0.00013 32.5 3.5 27 309-335 28-54 (91)
46 1ixr_A Holliday junction DNA h 66.7 9.7 0.00033 34.8 6.2 69 248-333 58-127 (191)
47 2owo_A DNA ligase; protein-DNA 65.6 9.8 0.00034 41.3 6.9 82 253-352 469-576 (671)
48 2ihm_A POL MU, DNA polymerase 64.7 16 0.00056 36.4 7.9 56 265-336 29-86 (360)
49 1kft_A UVRC, excinuclease ABC 62.9 3.3 0.00011 31.9 1.9 25 311-335 22-46 (78)
50 3arc_U Photosystem II 12 kDa e 62.8 2 6.8E-05 35.5 0.7 55 252-330 14-69 (97)
51 1jms_A Terminal deoxynucleotid 62.8 18 0.00062 36.4 7.8 56 265-336 48-105 (381)
52 2w9m_A Polymerase X; SAXS, DNA 62.7 5.7 0.00019 42.1 4.3 23 309-331 93-115 (578)
53 1dgs_A DNA ligase; AMP complex 61.0 9 0.00031 41.6 5.5 83 253-353 464-572 (667)
54 2edu_A Kinesin-like protein KI 59.5 5.1 0.00017 32.4 2.6 19 312-330 39-57 (98)
55 2fmp_A DNA polymerase beta; nu 58.1 18 0.00063 35.6 6.8 48 272-335 32-81 (335)
56 1s5l_U Photosystem II 12 kDa e 58.0 3.7 0.00013 35.9 1.6 19 312-330 62-80 (134)
57 3arc_U Photosystem II 12 kDa e 56.8 3.8 0.00013 33.8 1.3 20 312-331 25-44 (97)
58 4gfj_A Topoisomerase V; helix- 55.3 7.4 0.00025 40.3 3.5 84 250-335 536-644 (685)
59 2i5h_A Hypothetical protein AF 53.5 5.2 0.00018 37.3 1.8 19 312-330 131-149 (205)
60 2kp7_A Crossover junction endo 52.6 7.3 0.00025 31.4 2.4 40 274-329 35-74 (87)
61 2w9m_A Polymerase X; SAXS, DNA 52.5 12 0.00041 39.6 4.7 50 266-331 99-149 (578)
62 3b0x_A DNA polymerase beta fam 52.5 13 0.00044 39.3 4.9 61 264-340 93-159 (575)
63 1s5l_U Photosystem II 12 kDa e 51.7 6.1 0.00021 34.5 1.9 50 256-329 55-105 (134)
64 1cuk_A RUVA protein; DNA repai 51.0 9 0.00031 35.4 3.0 65 249-330 60-125 (203)
65 1wcn_A Transcription elongatio 50.8 19 0.00066 27.6 4.4 36 250-285 26-62 (70)
66 2bgw_A XPF endonuclease; hydro 42.7 18 0.00061 33.0 3.7 26 310-335 159-184 (219)
67 2bgw_A XPF endonuclease; hydro 41.3 18 0.00061 33.0 3.5 21 313-333 194-214 (219)
68 2jg6_A DNA-3-methyladenine gly 39.1 2.3E+02 0.0077 25.9 12.6 81 254-335 64-171 (186)
69 3r8n_M 30S ribosomal protein S 35.4 25 0.00087 29.7 3.2 44 309-352 12-59 (114)
70 1vq8_Y 50S ribosomal protein L 32.3 9.5 0.00033 36.2 0.0 26 312-337 14-40 (241)
71 2nrt_A Uvrabc system protein C 31.1 30 0.001 32.5 3.2 26 311-336 166-191 (220)
72 3j20_O 30S ribosomal protein S 31.0 32 0.0011 30.4 3.2 27 309-335 19-45 (148)
73 3iz6_M 40S ribosomal protein S 30.5 32 0.0011 30.5 3.2 27 309-335 24-50 (152)
74 3u5c_S 40S ribosomal protein S 30.5 26 0.0009 30.9 2.6 27 309-335 26-52 (146)
75 1vq8_Y 50S ribosomal protein L 30.4 11 0.00036 35.9 0.0 19 312-330 47-65 (241)
76 2xzm_M RPS18E; ribosome, trans 27.1 40 0.0014 30.0 3.1 27 309-335 26-52 (155)
77 1exn_A 5'-exonuclease, 5'-nucl 25.8 31 0.0011 33.5 2.4 23 313-335 203-225 (290)
78 1z3e_B DNA-directed RNA polyme 24.7 42 0.0014 26.0 2.5 19 312-330 40-58 (73)
79 3c1y_A DNA integrity scanning 24.2 48 0.0017 33.5 3.5 40 249-288 332-372 (377)
80 3c65_A Uvrabc system protein C 23.5 17 0.00058 34.2 0.0 28 311-338 171-198 (226)
81 3k4g_A DNA-directed RNA polyme 22.4 55 0.0019 26.3 2.8 19 312-330 43-61 (86)
82 2a1j_A DNA repair endonuclease 21.1 98 0.0034 22.8 3.9 34 249-282 21-54 (63)
83 2vqe_M 30S ribosomal protein S 21.0 38 0.0013 29.1 1.7 27 309-335 13-39 (126)
84 3q8k_A Flap endonuclease 1; he 20.9 44 0.0015 33.0 2.4 15 317-331 236-250 (341)
85 3c1y_A DNA integrity scanning 20.6 47 0.0016 33.6 2.6 41 282-333 327-367 (377)
86 2izo_A FEN1, flap structure-sp 20.3 47 0.0016 32.6 2.5 22 317-338 238-259 (346)
No 1
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=100.00 E-value=5.6e-41 Score=330.86 Aligned_cols=235 Identities=15% Similarity=0.266 Sum_probs=189.2
Q ss_pred EEEEeccCCCCCceEEEEeccCCCCCCCCCHHHHHHHHHHHHHHhcCCchhhHhhHHHHHHHHHHHhhhchhhhcccCCc
Q 014334 35 DVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFS 114 (426)
Q Consensus 35 ~v~i~q~~~~~~~L~~~v~~~~~~~~~~ls~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g 114 (426)
.|.|+|. ++.|. +++. +.+.+.+.+++||+||.| +.++++....++.++... +. ..|
T Consensus 51 ~~~l~q~---~~~~~--~~~~-----------~~~~~~~~~~~~fdLd~d----~~~~~~~l~~Dp~l~~~~-~~--~~g 107 (290)
T 3i0w_A 51 VVEVQKI---GEDVV--IYNI-----------NEEEFKNVWSEYFDLYRD----YGEIKKELSRDPLLKKSV-DF--GEG 107 (290)
T ss_dssp EEEEEEE---TTEEE--EETC-----------CHHHHHHTHHHHTTTTSC----HHHHHHHHTTSHHHHHHH-HH--TTT
T ss_pred EEEEEEc---CCEEE--EEcC-----------CHHHHHHHHHHHcCCCCC----HHHHHHHHhhCHHHHHHH-HH--CCC
Confidence 5688885 55554 3331 235678889999999999 666665444444444221 11 235
Q ss_pred ccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhh
Q 014334 115 GRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIA 194 (426)
Q Consensus 115 gRvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (426)
.|+++ +|+||+||++||+||+++.++.+|.++||++||+ |+
T Consensus 108 lR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~----------------~~---------------------- 148 (290)
T 3i0w_A 108 IRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGK----------------KL---------------------- 148 (290)
T ss_dssp CCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSC----------------EE----------------------
T ss_pred CCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC----------------Cc----------------------
Confidence 69999 6999999999999999999999999999999987 11
Q ss_pred hhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcCcH
Q 014334 195 ESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY 274 (426)
Q Consensus 195 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~Gy 274 (426)
..+| ..++.||||++|+++++++|++ +|+||
T Consensus 149 -----------------------------------~~~g-------------~~~~~fPtpe~la~~~~e~L~~-~g~g~ 179 (290)
T 3i0w_A 149 -----------------------------------EYKG-------------KIYYAFPTVDKLHEFTEKDFEE-CTAGF 179 (290)
T ss_dssp -----------------------------------EETT-------------EEEECCCCHHHHTTCCHHHHHH-TTCGG
T ss_pred -----------------------------------ccCC-------------cccccCCcHHHHHCCCHHHHHH-cCCch
Confidence 1112 3689999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCccccchHHHHHHHHhh
Q 014334 275 RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVH 353 (426)
Q Consensus 275 RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPvDthV~Ril~rly 353 (426)
||+||+++|+.+.+|.++++.|.++ +++++++.|++|||||||||+||| |++|++|+||+|+||+|+++++|
T Consensus 180 Ra~~I~~~A~~i~~g~~~l~~l~~~-------~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~ 252 (290)
T 3i0w_A 180 RAKYLKDTVDRIYNGELNLEYIKSL-------NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY 252 (290)
T ss_dssp GHHHHHHHHHHHHTTSSCHHHHHHS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhc
Confidence 9999999999999999999999987 899999999999999999999996 89999999999999999999999
Q ss_pred ccC-CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 014334 354 ARN-CTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEK 391 (426)
Q Consensus 354 ~~~-~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~y~~ 391 (426)
+.+ .+++++.+.+++.|++|++| +. ..||++++.
T Consensus 253 ~~~~~~~~~i~~~~~~~~~p~~~~---A~-~~Lw~~~R~ 287 (290)
T 3i0w_A 253 VAPDVSLKKIRDFGREKFGSLSGF---AQ-QYLFYYARE 287 (290)
T ss_dssp SCTTCCHHHHHHHHHHHHGGGHHH---HH-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhcchHHHH---HH-HHHHHhhhh
Confidence 865 56778877777777755554 44 236666543
No 2
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=100.00 E-value=5.8e-39 Score=316.88 Aligned_cols=255 Identities=18% Similarity=0.225 Sum_probs=198.2
Q ss_pred ccccccccccceecCCCCCCCCCCCceEEEEEeccCCCCCceEEEEeccCCCCCCCCCHHHHHHHHHHHHHHhcCCchhh
Q 014334 7 WDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADE 86 (426)
Q Consensus 7 wd~~~~~~~r~lr~~~~~~~~~~~~~~~~v~i~q~~~~~~~L~~~v~~~~~~~~~~ls~~~~~~i~~~v~r~l~Ld~d~~ 86 (426)
+.-..++|.|+++++++ +..|+|+++ ..+.+.++ +. ....+.+.+.+.|++||+||.|
T Consensus 28 e~~~~~~~~R~~~~~~~---------~~~v~v~~~--~~~~~~~~--~~-------~~~~~~~~~~~~~~~~fdLd~d-- 85 (295)
T 2jhn_A 28 DVVESGVWRRAIVLDGR---------AVAVMAYPE--SERTIVVE--GN-------FENREWEAVRRKLVEYLGLQNP-- 85 (295)
T ss_dssp CEEETTEEEEEEEETTE---------EEEEEEEEE--ETTEEEEE--ES-------SCGGGHHHHHHHHHHHHTCSCC--
T ss_pred EEEeCCEEEEEEEECCe---------eEEEEEEEC--CCCEEEEe--cC-------CchhhHHHHHHHHHHHhCCCCC--
Confidence 33556899999999976 889999874 34566666 41 2345678899999999999999
Q ss_pred HhhHHHHHHHHHHHhhhchhhhcccCC-cccccC--CCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 014334 87 RNVRDFKRIVRQVAQEEGEESQYMTDF-SGRVFR--SPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSIS 163 (426)
Q Consensus 87 ~~~~~f~~~~~~~~~~~~~~~~~~~~~-ggRvlr--~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~ 163 (426)
+..| .....++.+.... ..+ |.|+++ .+|+||+||++||+||+++.++.+|.++||+.||+-
T Consensus 86 --~~~~-~~~~~D~~l~~l~----~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~-------- 150 (295)
T 2jhn_A 86 --EELY-RFMDGDEKLRMLK----NRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDE-------- 150 (295)
T ss_dssp --HHHH-HHHHTSHHHHHHH----HHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCE--------
T ss_pred --HHHH-HhhccCHHHHHHH----HHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCC--------
Confidence 6666 4444343433211 123 449998 789999999999999999999999999999999861
Q ss_pred CCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCC
Q 014334 164 EDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPP 243 (426)
Q Consensus 164 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 243 (426)
+ +.+|
T Consensus 151 --------~---------------------------------------------------------~~~g---------- 155 (295)
T 2jhn_A 151 --------V---------------------------------------------------------EWNG---------- 155 (295)
T ss_dssp --------E---------------------------------------------------------EETT----------
T ss_pred --------C---------------------------------------------------------CCCC----------
Confidence 1 1112
Q ss_pred cccccccCCCCHHHHhcCCHHHHHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcC
Q 014334 244 SARDRIGNFPSPRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFG 322 (426)
Q Consensus 244 ~~~~~~~~FPtpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIG 322 (426)
..+|.||||++|+++++++|+. +|+++| |+||+++|+. | +++.|.++ +++++++.|++|||||
T Consensus 156 ---~~~~~fPtp~~la~~~~~~Lr~-~G~~~rKa~~i~~~A~~---g--~l~~l~~~-------~~~e~~~~L~~lpGIG 219 (295)
T 2jhn_A 156 ---LKFYGFPTQEAILKAGVEGLRE-CGLSRRKAELIVEIAKE---E--NLEELKEW-------GEEEAYEYLTSFKGIG 219 (295)
T ss_dssp ---EEEECCCCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHTC---S--SGGGGGGS-------CHHHHHHHHHTSTTCC
T ss_pred ---CccccCCCHHHHHcCCHHHHHH-cCCCHHHHHHHHHHHHC---C--CHhhhhcC-------CHHHHHHHHhcCCCcC
Confidence 3679999999999999999986 999985 9999999998 4 67777776 8899999999999999
Q ss_pred HHHHHHHH-HHhCCCCcccc-chHHHHHHHHhhccC---CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhCC
Q 014334 323 PFTRNNVL-VCIGFYHVIPT-DSETIRHLKQVHARN---CTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRFGK 395 (426)
Q Consensus 323 pkTAd~IL-~~Lg~~dvfPv-DthV~Ril~rly~~~---~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~y~~~~g~ 395 (426)
||||+||| |++| +|+||+ |.+++|+++++|+.. .+++++. ++.+.|.||++++.+ +||..+....+|
T Consensus 220 ~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~~~~~~~~~----~~~e~~~p~r~~a~~-~Lw~~~~~~~~~ 291 (295)
T 2jhn_A 220 RWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEIQSAEKVRE----IARERFGRFARDILF-YLFLYDRFFSKK 291 (295)
T ss_dssp HHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCCCCHHHHHH----HHHHHTGGGHHHHHH-HHHHHHHHTTC-
T ss_pred HHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCCCCCHHHHH----HHHHhcccHHHHHHH-HHHHhccccccc
Confidence 99999996 8999 999996 788888999998763 2344443 445667788777764 488877654333
No 3
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=100.00 E-value=1.4e-38 Score=322.41 Aligned_cols=234 Identities=19% Similarity=0.265 Sum_probs=179.3
Q ss_pred EEEEeccCCCCCceEEEEeccCCCCCCCCCHHHHHHHHHHHHHHhcCCchhhHhhHHHHHHHHHHHhhhchhhhcccCC-
Q 014334 35 DVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDF- 113 (426)
Q Consensus 35 ~v~i~q~~~~~~~L~~~v~~~~~~~~~~ls~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~- 113 (426)
.|+|+|. ++.|.+++++.... .. ..+...+.+.+++||+||.|+...+..|...++....+. . .+
T Consensus 78 v~~l~q~---~~~v~~~~~~~~~~---~~-~~~~~~~~~~~r~~fdLd~d~~~~~~~l~~~Dp~l~~l~----~---~~~ 143 (360)
T 2xhi_A 78 VWTLTQT---EEQLHCTVYRGDKS---QA-SRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVA----Q---KFQ 143 (360)
T ss_dssp EEEEEEC---SSEEEEEEECCSSS---CC-CCCCHHHHHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHH----H---HST
T ss_pred EEEEEEc---CCEEEEEEecCccc---cc-ccchHHHHHHHHHhcccCCCHHHHHHHHHhhCHHHHHHH----H---HcC
Confidence 5677884 57899999984211 11 122346788899999999994444333333444333322 1 13
Q ss_pred cccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhh
Q 014334 114 SGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRI 193 (426)
Q Consensus 114 ggRvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 193 (426)
|.|+++ +|+||+||++||+||+++.++.+|.++||+.||+ +++
T Consensus 144 glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~----------------~~~-------------------- 186 (360)
T 2xhi_A 144 GVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGP----------------RLI-------------------- 186 (360)
T ss_dssp TCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSC----------------EEE--------------------
T ss_pred CCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCC----------------Ccc--------------------
Confidence 459999 5999999999999999999999999999999987 121
Q ss_pred hhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHH-HHHHHCcC
Q 014334 194 AESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDES-FLAKRCNL 272 (426)
Q Consensus 194 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e-~Lr~~~g~ 272 (426)
+++| ..+|.||||++|++++++ .|+. +|+
T Consensus 187 ------------------------------------~~~g-------------~~~~~fPtpe~La~~~~ee~Lr~-~Gl 216 (360)
T 2xhi_A 187 ------------------------------------QLDD-------------VTYHGFPSLQALAGPEVEAHLRK-LGL 216 (360)
T ss_dssp ------------------------------------EETT-------------EEEECCCCHHHHTSTTHHHHHHH-TTC
T ss_pred ------------------------------------cCCC-------------cccccCCCHHHHHcCCHHHHHHH-cCC
Confidence 1222 257899999999999885 6776 999
Q ss_pred cHHHHHHHHHHHHHHhC---CCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCccccchHHHHH
Q 014334 273 GYRAGRILKLARGIVDG---QIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRH 348 (426)
Q Consensus 273 GyRAkyI~~lA~~i~eg---~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPvDthV~Ri 348 (426)
||||+||+++|+.+.++ .++++.|..+ +++++++.|++|||||||||+||| |+||++|+||||+||+|+
T Consensus 217 ~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~-------~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri 289 (360)
T 2xhi_A 217 GYRARYVSASARAILEEQGGLAWLQQLRES-------SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHI 289 (360)
T ss_dssp TTHHHHHHHHHHHHHHTTCTHHHHHGGGTS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCccCHHHHhcC-------CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHH
Confidence 99999999999999985 4677777766 889999999999999999999996 899999999999999999
Q ss_pred HHHhhccCC--------C---HHHHHHHHHHHhcCCChH
Q 014334 349 LKQVHARNC--------T---SKTVQMIAESIYGKYAPF 376 (426)
Q Consensus 349 l~rly~~~~--------t---~k~i~~~~~e~~g~~agw 376 (426)
++|+|+... + ++++.+.+.+.|++|++|
T Consensus 290 ~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~ 328 (360)
T 2xhi_A 290 AQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGW 328 (360)
T ss_dssp HHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999876531 1 234445567777766666
No 4
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=100.00 E-value=1.3e-36 Score=297.95 Aligned_cols=243 Identities=17% Similarity=0.160 Sum_probs=188.5
Q ss_pred ccccccceecCCCCCCCCCCCceEEEEEeccCCCCCceEEEEeccCCCCCCCCCHHHHHHHHHHHHHHhcCCchhhHhhH
Q 014334 11 SRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVR 90 (426)
Q Consensus 11 ~~~~~r~lr~~~~~~~~~~~~~~~~v~i~q~~~~~~~L~~~v~~~~~~~~~~ls~~~~~~i~~~v~r~l~Ld~d~~~~~~ 90 (426)
.++|.|++++++. +..|+|+|.+ ....+.+++..+ . ..+.+.+.+.+++||+||.| +.
T Consensus 32 ~~~y~r~~~~~~~---------~~~v~v~~~~-~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~ld~d----~~ 89 (282)
T 1mpg_A 32 DSYYARSLAVGEY---------RGVVTAIPDI-ARHTLHINLSAG------L--EPVAAECLAKMSRLFDLQCN----PQ 89 (282)
T ss_dssp SSCEEEEEEETTE---------EEEEEEEEET-TTTEEEEEECGG------G--GGGHHHHHHHHHHHHTTTCC----HH
T ss_pred CCEEEEEEEECCE---------eEEEEEEEcC-CCcEEEEEEecC------C--CccHHHHHHHHHHHHcCCCC----HH
Confidence 4789999999976 8899998851 234566776641 1 13567889999999999999 76
Q ss_pred HHHHHHHHHHhhhchhhhcccCCcccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCC
Q 014334 91 DFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQT 170 (426)
Q Consensus 91 ~f~~~~~~~~~~~~~~~~~~~~~ggRvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~ 170 (426)
.|+.... .+. .. ..|.|+++.+|+||+||++||+||+++.++.+|..+||+.||+
T Consensus 90 ~~~~~l~---~l~----~~--~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~---------------- 144 (282)
T 1mpg_A 90 IVNGALG---RLG----AA--RPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGE---------------- 144 (282)
T ss_dssp HHHHHHG---GGG----TT--CTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHH---HHH----HH--cCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC----------------
Confidence 6665321 111 11 1356999988999999999999999999999999999999987
Q ss_pred CCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCccccccc
Q 014334 171 PAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIG 250 (426)
Q Consensus 171 p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 250 (426)
++. .. + .++
T Consensus 145 ~~~---------------------------------------------------------~~-------------~-~~~ 153 (282)
T 1mpg_A 145 RLD---------------------------------------------------------DF-------------P-EYI 153 (282)
T ss_dssp BCS---------------------------------------------------------SC-------------T-TCB
T ss_pred CCC---------------------------------------------------------CC-------------C-Ccc
Confidence 111 00 1 478
Q ss_pred CCCCHHHHhcCCHHHHHHHCcC-cHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHH
Q 014334 251 NFPSPRELANLDESFLAKRCNL-GYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV 329 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~g~-GyRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~I 329 (426)
.||||++|+++++++|+. +|+ ++||+||+++|+.+.+|.++++.+ + +++++++.|++|||||||||+||
T Consensus 154 ~fPtp~~la~~~~~~Lr~-~G~~~~ra~~i~~~A~~~~~~~~~~~~~--~-------~~~~~~~~L~~lpGIG~~TA~~i 223 (282)
T 1mpg_A 154 CFPTPQRLAAADPQALKA-LGMPLKRAEALIHLANAALEGTLPMTIP--G-------DVEQAMKTLQTFPGIGRWTANYF 223 (282)
T ss_dssp CCCCHHHHHTCCHHHHHH-TTSCHHHHHHHHHHHHHHHHTCSCSSCC--S-------CHHHHHHHHTTSTTCCHHHHHHH
T ss_pred cCCCHHHHHcCCHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCCcccc--C-------CHHHHHHHHhcCCCcCHHHHHHH
Confidence 999999999999999986 998 799999999999999998876654 2 78999999999999999999999
Q ss_pred H-HHhCCCCcccc-chHHHHHHHHhhccCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 014334 330 L-VCIGFYHVIPT-DSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEK 391 (426)
Q Consensus 330 L-~~Lg~~dvfPv-DthV~Ril~rly~~~~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~y~~ 391 (426)
| |++|++|+||+ |.++++.+. ..+++++.+ +...|.||++++. .+||..++.
T Consensus 224 ll~~lg~~d~~pvdd~~~r~~l~-----~~~~~~~~~----~~~~~~P~r~~a~-~~lw~~~~~ 277 (282)
T 1mpg_A 224 ALRGWQAKDVFLPDDYLIKQRFP-----GMTPAQIRR----YAERWKPWRSYAL-LHIWYTEGW 277 (282)
T ss_dssp HHHHSCCSSCCCTTCHHHHHHST-----TCCHHHHHH----HHGGGTTCHHHHH-HHHHTCTTC
T ss_pred HHHhCCCCCcCccccHHHHHHhc-----cCCHHHHHH----HHHHcCCHHHHHH-HHHHHhccC
Confidence 6 89999999996 555554441 345566544 4467777877775 448876543
No 5
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=5.1e-37 Score=294.10 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=164.3
Q ss_pred HhcCCchhhHhhHHHHHHHHHHHhhhchhhhcccCCcc-cccC--CCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh
Q 014334 78 MLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSG-RVFR--SPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWE 154 (426)
Q Consensus 78 ~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~gg-Rvlr--~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~ 154 (426)
+|+||.|..+..+.+.+.++....+- ..+|| |+.. .+|+||+||++||+||+++.++.+|..+||+.||+
T Consensus 19 ~ldld~d~~~~~~~L~~~Dp~l~~li-------~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~ 91 (232)
T 4b21_A 19 HMSKDSDYKRAEKHLSSIDNKWSSLV-------KKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSD 91 (232)
T ss_dssp --CHHHHHHHHHHHHTTTCHHHHHHH-------HHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCS
T ss_pred cCCCccCHHHHHHHHHhhCHHHHHHH-------HHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCC
Confidence 78888886655555555454443332 12444 7643 24899999999999999999999999999999875
Q ss_pred hhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccc
Q 014334 155 LQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGL 234 (426)
Q Consensus 155 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (426)
T Consensus 92 -------------------------------------------------------------------------------- 91 (232)
T 4b21_A 92 -------------------------------------------------------------------------------- 91 (232)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcCcHH-HHHHHHHHHHHHhCCC-ChhHHHhhhhhcccccHHHHH
Q 014334 235 NELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQI-QLRELEDMCNEASLTAYVKLA 312 (426)
Q Consensus 235 ~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~l-dLe~L~~l~~~~~~~~~eea~ 312 (426)
.+.||||++|+++++++|+. +|+++| |+||+++|+.+.+|.+ +++.|.++ ++++++
T Consensus 92 --------------~~~fPtpe~la~~~~e~Lr~-~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~-------~~~~~~ 149 (232)
T 4b21_A 92 --------------NDEFPTPKQIMETDVETLHE-CGFSKLKSQEIHIVAEAALNKQIPSKSEIEKM-------SEEELM 149 (232)
T ss_dssp --------------SSSCCCHHHHHTSCHHHHHT-TTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHS-------CHHHHH
T ss_pred --------------CCCCCCHHHHHcCCHHHHHH-cCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcC-------CHHHHH
Confidence 15799999999999999987 999985 9999999999999999 89999887 899999
Q ss_pred HHHhcCCCcCHHHHHHHH-HHhCCCCcccc-chHHHHHHHHhhccC--CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 014334 313 EQLSQINGFGPFTRNNVL-VCIGFYHVIPT-DSETIRHLKQVHARN--CTSKTVQMIAESIYGKYAPFQFLAYWSELWHF 388 (426)
Q Consensus 313 e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPv-DthV~Ril~rly~~~--~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~ 388 (426)
++|++|||||||||+||| |+||++|+||+ |+||+|+++++|+.+ .++++ +.++.+.|+||++++.|+ ||+.
T Consensus 150 ~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~~~----~~~~~e~w~P~rs~A~~y-Lw~~ 224 (232)
T 4b21_A 150 ESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEE----VEKLTKPCKPYRTIAAWY-LWQI 224 (232)
T ss_dssp HHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHH----HHHHTGGGTTCHHHHHHH-HHTG
T ss_pred HHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCCCCCHHH----HHHHHHHccCHHHHHHHH-HHHc
Confidence 999999999999999997 89999999997 999999999999875 34444 445567888998888755 9988
Q ss_pred HHH
Q 014334 389 YEK 391 (426)
Q Consensus 389 y~~ 391 (426)
++.
T Consensus 225 ~~~ 227 (232)
T 4b21_A 225 PKL 227 (232)
T ss_dssp GGC
T ss_pred Ccc
Confidence 763
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=263.54 Aligned_cols=169 Identities=22% Similarity=0.355 Sum_probs=146.3
Q ss_pred cccCCC---ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhh
Q 014334 116 RVFRSP---TLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSR 192 (426)
Q Consensus 116 Rvlr~p---~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 192 (426)
|+.+.+ |+||+||++||+||+++.++.++..+| +.||.
T Consensus 40 r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg-------------------------------------- 80 (228)
T 3s6i_A 40 RPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISN-------------------------------------- 80 (228)
T ss_dssp CCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSG--------------------------------------
T ss_pred CCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcC--------------------------------------
Confidence 776544 899999999999999999999999999 87521
Q ss_pred hhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcC
Q 014334 193 IAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNL 272 (426)
Q Consensus 193 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~ 272 (426)
.+.||||++|+++++++|+. +|+
T Consensus 81 --------------------------------------------------------~~~fPtp~~la~~~~e~Lr~-~G~ 103 (228)
T 3s6i_A 81 --------------------------------------------------------NGQFPTPEEIRDMDFEIMRA-CGF 103 (228)
T ss_dssp --------------------------------------------------------GGSCCCHHHHHHSCHHHHHH-HTC
T ss_pred --------------------------------------------------------CCCCCCHHHHHcCCHHHHHH-cCC
Confidence 15899999999999999986 999
Q ss_pred cHH-HHHHHHHHHHHHhCCC-ChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCcccc-chHHHHH
Q 014334 273 GYR-AGRILKLARGIVDGQI-QLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPT-DSETIRH 348 (426)
Q Consensus 273 GyR-AkyI~~lA~~i~eg~l-dLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPv-DthV~Ri 348 (426)
++| |+||+++|+.+.+|.+ +++.|.++ +++++++.|++|||||||||+||| |+||++|+||+ |.|++|+
T Consensus 104 ~~rKa~~i~~~A~~~~~g~~p~~~~l~~~-------~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~ 176 (228)
T 3s6i_A 104 SARKIDSLKSIAEATISGLIPTKEEAERL-------SNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNG 176 (228)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCHHHHTTS-------CHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHH
Confidence 985 9999999999999999 68888887 899999999999999999999997 89999999996 6899999
Q ss_pred HHHhhccC--CCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q 014334 349 LKQVHARN--CTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKR 392 (426)
Q Consensus 349 l~rly~~~--~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~y~~~ 392 (426)
++++|+.+ .++++ +.++.+.|+||++++.|+ ||+.+...
T Consensus 177 ~~~~~~~~~~~~~~~----~~~~~e~w~P~r~~A~~y-Lw~~~~~~ 217 (228)
T 3s6i_A 177 YRYLHRLPKIPTKMY----VLKHSEICAPFRTAAAWY-LWKTSKLA 217 (228)
T ss_dssp HHHHTTCSSCCCHHH----HHHHHGGGTTCHHHHHHH-HHHGGGST
T ss_pred HHHHhCCCCCCCHHH----HHHHHHHhCCHHHHHHHH-HHHhCccc
Confidence 99999865 34444 345567888898888755 99887643
No 7
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.98 E-value=2.4e-32 Score=260.42 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=139.2
Q ss_pred cccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhh
Q 014334 116 RVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAE 195 (426)
Q Consensus 116 Rvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e 195 (426)
|....+|+||+||++||+||+++.++.++..+||+.||
T Consensus 54 ~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G------------------------------------------ 91 (225)
T 2yg9_A 54 VLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPG------------------------------------------ 91 (225)
T ss_dssp CCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTT------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhC------------------------------------------
Confidence 45566799999999999999999999999999997532
Q ss_pred hhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcCcH-
Q 014334 196 SKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY- 274 (426)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~Gy- 274 (426)
.|||++|+++++++|+. +|+++
T Consensus 92 --------------------------------------------------------~ptp~~la~~~~e~Lr~-~G~~~~ 114 (225)
T 2yg9_A 92 --------------------------------------------------------GVVPAALLKVSGDDLRG-VGLSWA 114 (225)
T ss_dssp --------------------------------------------------------CSCHHHHTTSCHHHHHH-TTCCHH
T ss_pred --------------------------------------------------------cCCHHHHHcCCHHHHHH-CCCcHH
Confidence 18999999999999986 99987
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCcccc-chHHHHHHHHh
Q 014334 275 RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPT-DSETIRHLKQV 352 (426)
Q Consensus 275 RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPv-DthV~Ril~rl 352 (426)
||+||+++|+.+.+|.++++.|.++ +++++++.|++|||||||||+||| |++|++|+||+ |+||+|+++++
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~-------~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l 187 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQ-------PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERL 187 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTS-------CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcC-------CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHh
Confidence 8999999999999999999998887 889999999999999999999997 89999999997 99999999999
Q ss_pred hccCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhh
Q 014334 353 HARNCTSKTVQMIAESIYGKYAPFQFLAYWSELWHFYEKRF 393 (426)
Q Consensus 353 y~~~~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw~~y~~~~ 393 (426)
|. ++++.+. . +.|.||++++.++ ||++|....
T Consensus 188 ~~----~~~~~~~-~---e~~~P~r~~a~~~-Lw~~~~~~~ 219 (225)
T 2yg9_A 188 YP----GEDWRDV-T---ARWAPYRSLASRY-LWANSARMQ 219 (225)
T ss_dssp ST----TSCHHHH-H---HHHTTCHHHHHHH-HHHHHHHHH
T ss_pred CC----HHHHHHH-H---HHcCCHHHHHHHH-HHHHHHhhc
Confidence 82 2333333 3 4455666666644 888887654
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.97 E-value=3.3e-30 Score=246.77 Aligned_cols=162 Identities=16% Similarity=0.277 Sum_probs=135.6
Q ss_pred cccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhh
Q 014334 116 RVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAE 195 (426)
Q Consensus 116 Rvlr~p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e 195 (426)
|....+|+||.||++||+||+++.++.++..+|++.||+
T Consensus 44 ~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~----------------------------------------- 82 (233)
T 2h56_A 44 QLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG----------------------------------------- 82 (233)
T ss_dssp EEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS-----------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-----------------------------------------
Confidence 665667999999999999999999999999999998763
Q ss_pred hhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHHCcCcH-
Q 014334 196 SKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY- 274 (426)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~~g~Gy- 274 (426)
.||||++|+++++++|+. +|+++
T Consensus 83 -------------------------------------------------------~fPtp~~la~~~~e~Lr~-~G~~~~ 106 (233)
T 2h56_A 83 -------------------------------------------------------ALEKPEQLYRVSDEALRQ-AGVSKR 106 (233)
T ss_dssp -------------------------------------------------------CCCCTHHHHTSCHHHHHH-TTCCHH
T ss_pred -------------------------------------------------------CCCCHHHHHcCCHHHHHH-cCCCHH
Confidence 389999999999999986 99998
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCccccchHHHHHHHHh-
Q 014334 275 RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQV- 352 (426)
Q Consensus 275 RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPvDthV~Ril~rl- 352 (426)
||+||+++|+.+.+|.++++.+..+ +++++++.|++|||||||||+||| +++|++|+||||+|+.|++.+.
T Consensus 107 KA~~I~~~A~~i~~~~~~~~~l~~~-------p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~ 179 (233)
T 2h56_A 107 KIEYIRHVCEHVESGRLDFTELEGA-------EATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWL 179 (233)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHTTS-------CHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHh
Confidence 7999999999999998898888876 889999999999999999999997 8999999999977766666554
Q ss_pred hccC--CCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 014334 353 HARN--CTSKTVQMIAESIYGKYAPFQFLAYWSELW 386 (426)
Q Consensus 353 y~~~--~t~k~i~~~~~e~~g~~agwq~l~fw~~Lw 386 (426)
|..+ .++++++ ++...|.||++++.++ ||
T Consensus 180 ~~~~~~~~~~~~~----~~~e~~~P~~~~a~~~-lw 210 (233)
T 2h56_A 180 YGNGEGDGKKLLI----YHGKAWAPYETVACLY-LW 210 (233)
T ss_dssp HSSSCSCHHHHHH----HHHGGGTTCHHHHHHH-HH
T ss_pred ccCCCCCCHHHHH----HHHHHcCcHHHHHHHH-HH
Confidence 4432 3444443 3446666776666533 66
No 9
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.91 E-value=5.9e-24 Score=202.10 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=77.1
Q ss_pred CCCCHHHHhcCCHHHHHHH-CcCcH--HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHH
Q 014334 251 NFPSPRELANLDESFLAKR-CNLGY--RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~-~g~Gy--RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd 327 (426)
.||||++|+++++++|++. .++|| ||+||+++|+.+.++. + . +.++.++.|++|||||||||+
T Consensus 58 ~~pt~~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~~i~~~~-~------g-------~~p~~~~~L~~lpGIG~~TA~ 123 (225)
T 1kg2_A 58 RFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH-G------G-------KFPETFEEVAALPGVGRSTAG 123 (225)
T ss_dssp HCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHS-T------T-------SCCCSHHHHHTSTTCCHHHHH
T ss_pred HCCCHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHHHHh-C------C-------CchHHHHHHhcCCCCcHHHHH
Confidence 5899999999999999874 35676 9999999999998742 1 0 223468999999999999999
Q ss_pred HHH-HHhCCCCccccchHHHHHHHHhhccC
Q 014334 328 NVL-VCIGFYHVIPTDSETIRHLKQVHARN 356 (426)
Q Consensus 328 ~IL-~~Lg~~dvfPvDthV~Ril~rly~~~ 356 (426)
+|| +++|++ +||||+||+|+++|+|+.+
T Consensus 124 ~il~~a~~~~-~~~vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 124 AILSLSLGKH-FPILDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHCCS-CCCCCHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCC-cceeCHHHHHHHHHHcCCC
Confidence 997 899998 5789999999999998765
No 10
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.91 E-value=5.9e-24 Score=200.13 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=87.6
Q ss_pred CCCCHHHHhcCCHHHHHHHC-cCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHH
Q 014334 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTA 326 (426)
.||||++|+++++++|.+.+ ++|| ||+||+++|+.+.++.. . +.+++++.|++|||||||||
T Consensus 57 ~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~-------g-------~~~~~~~~L~~l~GIG~~tA 122 (211)
T 2abk_A 57 VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN-------G-------EVPEDRAALEALPGVGRKTA 122 (211)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT-------T-------SCCSCHHHHHHSTTCCHHHH
T ss_pred HCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-------C-------CchHHHHHHHhCCCCChHHH
Confidence 58999999999999987742 4564 99999999999987421 0 23466899999999999999
Q ss_pred HHHH-HHhCCCCccccchHHHHHHHHhhccC-CCHHHHHHHHHHHhc
Q 014334 327 NNVL-VCIGFYHVIPTDSETIRHLKQVHARN-CTSKTVQMIAESIYG 371 (426)
Q Consensus 327 d~IL-~~Lg~~dvfPvDthV~Ril~rly~~~-~t~k~i~~~~~e~~g 371 (426)
+||| +++|++ +||||+||.|+++|++... .+++++++.+.++++
T Consensus 123 ~~il~~~~~~~-~~~vD~~v~Rv~~rlgl~~~~~~~~~~~~~~~~~p 168 (211)
T 2abk_A 123 NVVLNTAFGWP-TIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVP 168 (211)
T ss_dssp HHHHHHHHCCC-CCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCC-cCCcCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9997 899998 9999999999999987543 467888888877765
No 11
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.90 E-value=3.2e-23 Score=196.45 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=118.5
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcc
Q 014334 121 PTLFEDMVKCMLLCNCQWPRTLSMARALCEL-QWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKAS 199 (426)
Q Consensus 121 p~~fE~lv~~I~s~N~~~~r~~~m~~~Lc~~-~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 199 (426)
+|+||.||++|||||++|.++.++..+|++. |++
T Consensus 28 ~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt--------------------------------------------- 62 (218)
T 1pu6_A 28 ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILE--------------------------------------------- 62 (218)
T ss_dssp TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSC---------------------------------------------
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCC---------------------------------------------
Confidence 5899999999999999999999999999874 211
Q ss_pred hhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCcccccccCCCCHHHHhcCCHHHHHHH---CcCcH-H
Q 014334 200 SEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKR---CNLGY-R 275 (426)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPtpe~La~~~~e~Lr~~---~g~Gy-R 275 (426)
...||||++|+++++++|.+. +|+.. |
T Consensus 63 -------------------------------------------------~~~~~t~~~la~~~~e~L~~~ir~~G~~~~K 93 (218)
T 1pu6_A 63 -------------------------------------------------NDDEINLKKIAYIEFSKLAECVRPSGFYNQK 93 (218)
T ss_dssp -------------------------------------------------SCHHHHHHHHHHSCHHHHHHHTGGGSCHHHH
T ss_pred -------------------------------------------------ccccccHHHHHhCCHHHHHHHHHHCCCcHHH
Confidence 013677999999999999764 34433 9
Q ss_pred HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH-HHhCCCCccccchHHHHHHHHhhc
Q 014334 276 AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHA 354 (426)
Q Consensus 276 AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~dvfPvDthV~Ril~rly~ 354 (426)
|+||+++|+.+.++...+ ..+ +.+++++.|++|||||||||+||| +++|++ +||||+|++|++.|++.
T Consensus 94 A~~L~~~a~~i~~~~~~l---~~~-------~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~vD~~v~Ri~~rlg~ 162 (218)
T 1pu6_A 94 AKRLIDLSGNILKDFQSF---ENF-------KQEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYSYLFLKKLGI 162 (218)
T ss_dssp HHHHHHHHHHHHHHHSSH---HHH-------HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCh---hhc-------cchHHHHHHHcCCCcCHHHHHHHHHHHCCCC-ccccCHHHHHHHHHcCC
Confidence 999999999999864333 334 567889999999999999999997 899996 99999999999999865
Q ss_pred cCCCHHHHHHHHHH
Q 014334 355 RNCTSKTVQMIAES 368 (426)
Q Consensus 355 ~~~t~k~i~~~~~e 368 (426)
...+++++++.+.+
T Consensus 163 ~~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 163 EIEDYDELQHFFEK 176 (218)
T ss_dssp CCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55678888888776
No 12
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.90 E-value=6.1e-23 Score=195.56 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=86.0
Q ss_pred CCCCHHHHhcCCHHHHHHHC-cCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHH
Q 014334 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTA 326 (426)
.||||++|+++++++|.+.+ ++|| ||+||+++|+.+.++.- . +.+++++.|++|||||||||
T Consensus 61 ~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~-------g-------~~p~~~~~L~~lpGIG~~TA 126 (226)
T 1orn_A 61 KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYN-------G-------EVPRDRDELMKLPGVGRKTA 126 (226)
T ss_dssp HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHST-------T-------SCCSCHHHHTTSTTCCHHHH
T ss_pred HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-------C-------CcHHHHHHHHHCCCccHHHH
Confidence 48999999999999987643 4553 99999999999987410 0 22356899999999999999
Q ss_pred HHHH-HHhCCCCccccchHHHHHHHHhhccC--CCHHHHHHHHHHHhc
Q 014334 327 NNVL-VCIGFYHVIPTDSETIRHLKQVHARN--CTSKTVQMIAESIYG 371 (426)
Q Consensus 327 d~IL-~~Lg~~dvfPvDthV~Ril~rly~~~--~t~k~i~~~~~e~~g 371 (426)
++|| +++|++ +||||+|+.|++.|++..+ .+++++...+.++++
T Consensus 127 ~~il~~a~g~~-~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p 173 (226)
T 1orn_A 127 NVVVSVAFGVP-AIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP 173 (226)
T ss_dssp HHHHHHHHCCC-CCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCc-eeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcC
Confidence 9997 899996 9999999999999987643 567778777766543
No 13
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.89 E-value=1.9e-23 Score=198.16 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=75.7
Q ss_pred CCCCHHHHhcCCHHHHHHHC-cCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHH
Q 014334 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTA 326 (426)
.||||++|+++++++|.+.+ ++|| ||+||+++|+.+.++.- . +.++.++.|++|||||||||
T Consensus 63 ~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~-------g-------~~p~~~~~L~~lpGIG~~TA 128 (221)
T 1kea_A 63 KYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYG-------G-------RVPRNRKAILDLPGVGKYTC 128 (221)
T ss_dssp HCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHT-------T-------SCCSCHHHHHTSTTCCHHHH
T ss_pred HCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhC-------C-------CchHHHHHHHhCCCCcHHHH
Confidence 38999999999999997643 3454 99999999999987410 0 22356799999999999999
Q ss_pred HHHH-HHhCCCCccccchHHHHHHHHhhccC
Q 014334 327 NNVL-VCIGFYHVIPTDSETIRHLKQVHARN 356 (426)
Q Consensus 327 d~IL-~~Lg~~dvfPvDthV~Ril~rly~~~ 356 (426)
++|| +++|++ +||||+||+|+++|+|+..
T Consensus 129 ~~il~~~~~~~-~~~vD~~v~Rv~~rl~gl~ 158 (221)
T 1kea_A 129 AAVMCLAFGKK-AAMVDANFVRVINRYFGGS 158 (221)
T ss_dssp HHHHHHTTCCC-CCCCCHHHHHHHHHHHCGG
T ss_pred HHHHHHhcCCC-cceecHHHHHHHHHHhCCC
Confidence 9997 899996 8999999999999997754
No 14
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.87 E-value=8.8e-22 Score=199.14 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=105.7
Q ss_pred CCCCHHHHhcCCHHHHHHHC-cCcH--HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHH
Q 014334 251 NFPSPRELANLDESFLAKRC-NLGY--RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~-g~Gy--RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd 327 (426)
.||||++|+++++++|.+.+ ++|| ||+||+++|+.+.++.. . +.++.++.|++|||||+|||+
T Consensus 67 ~~pt~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~a~~~~~~~~-------g-------~~p~~~~~L~~l~GIG~~tA~ 132 (369)
T 3fsp_A 67 RFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYG-------G-------KVPDDPDEFSRLKGVGPYTVG 132 (369)
T ss_dssp HCCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHHHT-------T-------CCCCSHHHHHTSTTCCHHHHH
T ss_pred HCCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcC-------C-------CChhHHHHHhcCCCcCHHHHH
Confidence 48999999999999997642 4554 99999999999987210 0 223468999999999999999
Q ss_pred HHH-HHhCCCCccccchHHHHHHHHhhccCC------CHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHH-hhCCCC
Q 014334 328 NVL-VCIGFYHVIPTDSETIRHLKQVHARNC------TSKTVQMIAESIYGK--YAPFQFLAYWSELWHFYEK-RFGKLS 397 (426)
Q Consensus 328 ~IL-~~Lg~~dvfPvDthV~Ril~rly~~~~------t~k~i~~~~~e~~g~--~agwq~l~fw~~Lw~~y~~-~~g~~~ 397 (426)
||| +++|++ ++|||+||+|++.|+|+.+. +++++.+.+.++.+. |.-|+..+ .++=+.+++ +...|.
T Consensus 133 ~il~~~~~~~-~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l--~~~G~~~C~~~~P~C~ 209 (369)
T 3fsp_A 133 AVLSLAYGVP-EPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEAL--IELGALVCTPRRPSCL 209 (369)
T ss_dssp HHHHHHHCCC-CCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHHHHH--HHHHHHTSCSSSCCTT
T ss_pred HHHHHHCCCC-cccccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhCChhhHHHHHHHH--HHHHHHhcCCCCCCCC
Confidence 997 899996 88999999999999998652 234455555555542 22232211 123333443 244566
Q ss_pred CCC----CccchhhhhcccCccccccccc
Q 014334 398 EMP----YSDYKLITASNMGIKNIRKVKR 422 (426)
Q Consensus 398 ~~~----~s~~~~~~~~~~~~~~~~~~~~ 422 (426)
.|| |..|+..+...+-.|.++++++
T Consensus 210 ~Cpl~~~C~~~~~~~~~~~PvK~~kk~~~ 238 (369)
T 3fsp_A 210 LCPVQAYCQAFAEGVAEELPVKMKKTAVK 238 (369)
T ss_dssp TCTTGGGCHHHHHTCGGGCSCCCCCCCCE
T ss_pred CCCChhhhHHHhcCCcccCCccccccCcc
Confidence 665 4456666666655555544443
No 15
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.84 E-value=9.8e-21 Score=186.51 Aligned_cols=100 Identities=26% Similarity=0.329 Sum_probs=78.8
Q ss_pred CCCCHHHHhcCCHHHHHHHC-cCcH--HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhc-CCCcCHHHH
Q 014334 251 NFPSPRELANLDESFLAKRC-NLGY--RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQ-INGFGPFTR 326 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~-g~Gy--RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~-L~GIGpkTA 326 (426)
.||||++|+++++++|.+.+ ++|| ||+||+++|+.+.++... ..++.+++|++ |||||+|||
T Consensus 77 ~fptpe~La~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g--------------~~p~~~~~Ll~~LpGIG~kTA 142 (287)
T 3n5n_X 77 KWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGG--------------HMPRTAETLQQLLPGVGRYTA 142 (287)
T ss_dssp HCCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTT--------------CCCSSHHHHHHHSTTCCHHHH
T ss_pred HCCCHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------------CCcHHHHHHHHHcCCCCHHHH
Confidence 48999999999999987742 5565 999999999999873100 11224788998 999999999
Q ss_pred HHHH-HHhCCCCccccchHHHHHHHHhhccC--CCHHHHHHH
Q 014334 327 NNVL-VCIGFYHVIPTDSETIRHLKQVHARN--CTSKTVQMI 365 (426)
Q Consensus 327 d~IL-~~Lg~~dvfPvDthV~Ril~rly~~~--~t~k~i~~~ 365 (426)
++|| +++|++ +||||+||+|++.|+|+.+ .++.++.+.
T Consensus 143 ~~iL~~a~g~p-~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~ 183 (287)
T 3n5n_X 143 GAIASIAFGQA-TGVVDGNVARVLCRVRAIGADPSSTLVSQQ 183 (287)
T ss_dssp HHHHHHHSCCC-CCCCCHHHHHHHHHHTTCCSCTTSHHHHHH
T ss_pred HHHHHHhcCCC-CccccHHHHHHHHHhCCCCCCCChHHHHHH
Confidence 9997 899996 7899999999999999875 233444443
No 16
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.84 E-value=2.3e-20 Score=175.49 Aligned_cols=93 Identities=18% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCCHHHHhcCCHHHHHHHCcCcH---HHHHHHHHHHHHHhCC-CChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHH
Q 014334 252 FPSPRELANLDESFLAKRCNLGY---RAGRILKLARGIVDGQ-IQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (426)
Q Consensus 252 FPtpe~La~~~~e~Lr~~~g~Gy---RAkyI~~lA~~i~eg~-ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd 327 (426)
++++++|. +.|+. +|+|| ||+||+++|+.+.++. .+++.+..+ +++++++.|++|||||||||+
T Consensus 64 ~~~~e~l~----~~ir~-~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~-------~~~~~~~~L~~lpGIG~kTA~ 131 (207)
T 3fhg_A 64 YANEEEIR----NILKS-CKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADE-------DQQLARERLLNIKGIGMQEAS 131 (207)
T ss_dssp TCCHHHHH----HHHHH-TTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHH-------CHHHHHHHHTTSTTCCHHHHH
T ss_pred cCCHHHHH----HHHHH-hccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCC-------CHHHHHHHHHcCCCcCHHHHH
Confidence 45566653 23554 78775 8999999999887642 245566555 778999999999999999999
Q ss_pred HHHHHhCCCCccccchHHHHHHHHhhccC
Q 014334 328 NVLVCIGFYHVIPTDSETIRHLKQVHARN 356 (426)
Q Consensus 328 ~IL~~Lg~~dvfPvDthV~Ril~rly~~~ 356 (426)
|||+-+++.++||+|+||+|++.|++..+
T Consensus 132 ~il~~~~~~~~~~vD~~v~Ri~~rlg~~~ 160 (207)
T 3fhg_A 132 HFLRNVGYFDLAIIDRHIIDFMRRIGAIG 160 (207)
T ss_dssp HHHHHTTCCSSCCCCHHHHHHHHHTTSSC
T ss_pred HHHHHhCCCCcceecHHHHHHHHHcCCCC
Confidence 99732355789999999999999998754
No 17
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.77 E-value=1.8e-18 Score=164.34 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=79.1
Q ss_pred HHHHhcCCHHHHHH---HCc--Cc-HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHh-cCCCcCHHHHH
Q 014334 255 PRELANLDESFLAK---RCN--LG-YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLS-QINGFGPFTRN 327 (426)
Q Consensus 255 pe~La~~~~e~Lr~---~~g--~G-yRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~-~L~GIGpkTAd 327 (426)
|+.|+.+++++|.+ .+| |. .||+||.++|+.+ | ++..+..+ +.+++++.|+ +|||||||||+
T Consensus 76 p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i--g--~l~~~~~~-------~~~~~r~~L~~~l~GVG~kTA~ 144 (219)
T 3n0u_A 76 GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL--G--KLKNLVKG-------DPFQSREFLVRNAKGIGWKEAS 144 (219)
T ss_dssp TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT--T--THHHHHHS-------CHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--H--HHHHHhcC-------CcHHHHHHHHHhCCCCCHHHHH
Confidence 34566677766544 256 32 3899999999987 4 34555554 8899999999 99999999999
Q ss_pred HHH-HHhCCCCccccchHHHHHHHHhhccCC-----C---HHHHHHHHHHHh
Q 014334 328 NVL-VCIGFYHVIPTDSETIRHLKQVHARNC-----T---SKTVQMIAESIY 370 (426)
Q Consensus 328 ~IL-~~Lg~~dvfPvDthV~Ril~rly~~~~-----t---~k~i~~~~~e~~ 370 (426)
||| + +|+.++||||+||.|++.|++..+. | +.++++.++++.
T Consensus 145 ~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a 195 (219)
T 3n0u_A 145 HFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVA 195 (219)
T ss_dssp HHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHH
Confidence 998 6 8888899999999999999987642 2 445666665443
No 18
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.73 E-value=1.3e-17 Score=158.08 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=65.8
Q ss_pred HhcCCHHHHHHH---CcCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHh-cCCCcCHHHHHHHH
Q 014334 258 LANLDESFLAKR---CNLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLS-QINGFGPFTRNNVL 330 (426)
Q Consensus 258 La~~~~e~Lr~~---~g~Gy---RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~-~L~GIGpkTAd~IL 330 (426)
|+.+++++|.+. +|.+| ||+||+++|+ + |.+ ++.+..+ .+.++.++.|+ +|||||||||+|||
T Consensus 73 l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~--~~l-~~~~~~~------~~~~~~re~Ll~~LpGVG~KTA~~vL 142 (214)
T 3fhf_A 73 FLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F--KNI-KDIVESF------ENEKVAREFLVRNIKGIGYKEASHFL 142 (214)
T ss_dssp HHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G--CCH-HHHHHHS------SSHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h--hHH-HHHhccc------CCcHHHHHHHHHhCCCCCHHHHHHHH
Confidence 555666665442 45223 8999999999 5 322 3344432 26789999999 99999999999998
Q ss_pred -HHhCCCCccc-cchHHHHHHHHhhccC
Q 014334 331 -VCIGFYHVIP-TDSETIRHLKQVHARN 356 (426)
Q Consensus 331 -~~Lg~~dvfP-vDthV~Ril~rly~~~ 356 (426)
++ ++ +.|| ||+||+|+++|++..+
T Consensus 143 ~~~-g~-~~~~vVDthv~Ri~~RlG~~~ 168 (214)
T 3fhf_A 143 RNV-GY-DDVAIIDRHILRELYENNYID 168 (214)
T ss_dssp HHT-TC-CSCCCCCHHHHHHHHHTTSSS
T ss_pred HHc-CC-CCcccCcHHHHHHHHHcCCCC
Confidence 55 77 6888 9999999999998765
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.70 E-value=6.2e-17 Score=147.15 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=70.4
Q ss_pred CCCCHHHHhcCCHHHHHHHC-cCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHH
Q 014334 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (426)
Q Consensus 251 ~FPtpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTA 326 (426)
.||||++|+++++++|.+.+ ++|| ||++|+++|+.+.... .+.|++|||||+|||
T Consensus 59 ~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~---------------------~~~L~~LpGVG~yTA 117 (161)
T 4e9f_A 59 KYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQ---------------------WKYPIELHGIGKYGN 117 (161)
T ss_dssp HSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSC---------------------CSSGGGSTTCCHHHH
T ss_pred HCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCC---------------------hhhhhcCCCchHHHH
Confidence 58999999999999988753 6774 8999999998664321 367899999999999
Q ss_pred HHHH-HHhCC-CCccccchHHHHHHHHhhcc
Q 014334 327 NNVL-VCIGF-YHVIPTDSETIRHLKQVHAR 355 (426)
Q Consensus 327 d~IL-~~Lg~-~dvfPvDthV~Ril~rly~~ 355 (426)
|+|+ ||+|. ..++|+|.+++|.+.+++..
T Consensus 118 dav~~F~~~e~~~V~p~D~~l~r~l~wl~~~ 148 (161)
T 4e9f_A 118 DSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN 148 (161)
T ss_dssp HHHHHHTSSCGGGCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCcHHHHHHHHHHHcC
Confidence 9997 99996 46889999999999987654
No 20
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=85.72 E-value=0.53 Score=44.20 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=25.7
Q ss_pred cHHHHHHHHhcCCCcCHHHHHHHH-HHhCCC
Q 014334 307 AYVKLAEQLSQINGFGPFTRNNVL-VCIGFY 336 (426)
Q Consensus 307 ~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~ 336 (426)
..+++.+.|..|||||||+|.-+. +-|.++
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 468899999999999999999995 566664
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=85.60 E-value=1.3 Score=43.94 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=38.5
Q ss_pred HHHHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccH-HHHHHHHhcCCCcCHHHHHHHH
Q 014334 264 SFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAY-VKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 264 e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~-eea~e~L~~L~GIGpkTAd~IL 330 (426)
++|.++=|+|-+ |+-|.++. ..|.+ ..|..++. +. ......|++++||||++|.-+-
T Consensus 57 ~~l~~LpGIG~~~A~kI~E~l---~tG~~--~~le~l~~-----~~~~~~l~~l~~V~GiGpk~a~~l~ 115 (335)
T 2fmp_A 57 AEAKKLPGVGTKIAEKIDEFL---ATGKL--RKLEKIRQ-----DDTSSSINFLTRVSGIGPSAARKFV 115 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH---HHSSC--HHHHHHHH-----CHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHH---HhCCc--HHHHHHHc-----ccchhHHHHHhCCCCCCHHHHHHHH
Confidence 346654478875 55555544 36764 44555422 33 6788999999999999999884
No 22
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=84.11 E-value=0.67 Score=43.94 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.5
Q ss_pred cHHHHHHHHhcCCCcCHHHHHHHH-HHhCCC
Q 014334 307 AYVKLAEQLSQINGFGPFTRNNVL-VCIGFY 336 (426)
Q Consensus 307 ~~eea~e~L~~L~GIGpkTAd~IL-~~Lg~~ 336 (426)
+.+++.+.|..|||||||+|.-+. +-|.+.
T Consensus 6 ~l~~LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 6 SLVSLIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 458899999999999999999995 566664
No 23
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=82.22 E-value=1.9 Score=46.21 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCCHHHHhcCCHHHHHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHH-hhhh---h-------cc-cccHHHH----HHH
Q 014334 252 FPSPRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELE-DMCN---E-------AS-LTAYVKL----AEQ 314 (426)
Q Consensus 252 FPtpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~-~l~~---~-------~~-~~~~eea----~e~ 314 (426)
.-++.+|-.++.++|..+-|+|-| |..|.+.-+.- ...+|..+- .+.= + +. -.+.+.+ .++
T Consensus 468 i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~s--k~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~ 545 (586)
T 4glx_A 468 VHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKA--KETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545 (586)
T ss_dssp CSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHH--TBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHH
T ss_pred CCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHH--cCCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHH
Confidence 468888999999999875588864 66555433321 112222111 1100 0 00 0012222 368
Q ss_pred HhcCCCcCHHHHHHHHHHhCCCCccccchHHHHHHHHhh
Q 014334 315 LSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVH 353 (426)
Q Consensus 315 L~~L~GIGpkTAd~IL~~Lg~~dvfPvDthV~Ril~rly 353 (426)
|.+++|||+.+|+.|.--|. |-+.+.++.++.
T Consensus 546 l~~i~giG~~~A~si~~ff~-------~~~n~~~i~~L~ 577 (586)
T 4glx_A 546 LQKVPDVGIVVASHVHNFFA-------EESNRNVISELL 577 (586)
T ss_dssp HTTSTTCCHHHHHHHHHHHH-------SHHHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHHHHc-------CHHHHHHHHHHH
Confidence 99999999999999973232 445566666554
No 24
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=81.82 E-value=4.2 Score=40.32 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=32.4
Q ss_pred HHHHCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 266 LAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 266 Lr~~~g~GyRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
+.+..|-.||+..-...|..|..-..++. + .++|.+|||||+++|+.|.
T Consensus 26 ~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~------------~----~~~l~~lpGIG~~~A~kI~ 74 (335)
T 2bcq_A 26 AYSVQGDKWRALGYAKAINALKSFHKPVT------------S----YQEACSIPGIGKRMAEKII 74 (335)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSCCSCCC------------C----HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHcCccHhHHHHHHHHHHHHhCCcccc------------C----HHHHhcCCCccHHHHHHHH
Confidence 33334555888888888888876433321 2 1247888888888888884
No 25
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=81.67 E-value=1.7 Score=43.64 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=36.5
Q ss_pred HHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 266 LAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 266 Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
|.++=|+|-+ |+-|.++.+ .|.+ ..|..++. .........|++++|||||+|.-+-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~---tG~~--~~le~L~~----d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLE---HGTC--EEVKQVRC----SERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHH---HSCC--HHHHHHHH----SHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHH---cCCh--HHHHHHhc----ccchHHHHHHhCCCCCCHHHHHHHH
Confidence 4433377865 555554443 6764 44444421 1556778999999999999999874
No 26
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=80.39 E-value=2.7 Score=41.76 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 263 ESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 263 ~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
.++|.++=|+|-+ |+-|.++. ..|.+ ..|..++. .+. +.+.|++++||||++|.-+-
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l---~tG~~--~~le~l~~-----~~p-~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEIL---ESGHL--RKLDHISE-----SVP-VLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH---HSSSC--GGGGGCCT-----THH-HHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHH---HcCCc--hHHHHHhh-----hhH-HHHHHhcCCCcCHHHHHHHH
Confidence 3346654488875 55555553 36764 34444411 344 77888899999999999874
No 27
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=80.07 E-value=2.6 Score=44.54 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHHHhcCCHHHHHHHCcCcHH-HHHHHHHHHHHHhCCCChh-HHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHHHH
Q 014334 255 PRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLR-ELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVC 332 (426)
Q Consensus 255 pe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe-~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL~~ 332 (426)
.+.+.+.+.+.+.++-|.|-+ +.+|..+. .+|.+.+- .+.. ...+....|++++|||||+|-.++-.
T Consensus 44 i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v---~~g~~~l~~~~~~--------~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 44 IEEIAEKGKEALMELPGVGPDLAEKILEFL---RTGKVRKHEELSR--------KVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHHHHTTCHHHHHTSTTCCHHHHHHHHHHH---HHSSCHHHHHHHH--------HSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hhhHhhcchhHHHhCCCCCHHHHHHHHHHH---HcCcHHHHhhhhh--------hhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 455555443336653367865 45555443 46766432 2222 22356788999999999999999755
Q ss_pred hCCC
Q 014334 333 IGFY 336 (426)
Q Consensus 333 Lg~~ 336 (426)
||..
T Consensus 113 lg~~ 116 (575)
T 3b0x_A 113 LGID 116 (575)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 5543
No 28
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=79.77 E-value=1.4 Score=35.28 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 308 YVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 308 ~eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
.......|..||||||+.+..+|.-+|-
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~~FgS 40 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMHHVKN 40 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHHHSSC
T ss_pred cccHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3567899999999999999999866664
No 29
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=79.28 E-value=1.2 Score=41.62 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=8.4
Q ss_pred HHhcCCCcCHHHHHHH
Q 014334 314 QLSQINGFGPFTRNNV 329 (426)
Q Consensus 314 ~L~~L~GIGpkTAd~I 329 (426)
.|.++||||+|+|+-|
T Consensus 124 ~L~~vpGIG~KtA~rI 139 (212)
T 2ztd_A 124 ALTRVPGIGKRGAERM 139 (212)
T ss_dssp HHHTSTTCCHHHHHHH
T ss_pred HHhhCCCCCHHHHHHH
Confidence 3455555555555555
No 30
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=78.82 E-value=2.3 Score=42.95 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 266 LAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 266 Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
|.++=|+|-+ |+-|.++ +..|.+ ..|..++. .........|++++||||++|.-+-
T Consensus 82 l~~lpGIG~~ia~kI~E~---l~tG~~--~~le~l~~----d~~~~~l~~l~~I~GvGpk~a~~ly 138 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGI---IEDGES--SEAKAVLN----DERYKSFKLFTSVFGVGLKTAEKWF 138 (381)
T ss_dssp GTTCSSCCHHHHHHHHHH---HHHSSC--HHHHHHHH----CHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHH---HHcCCc--HHHHHHhc----CcchhHHHHHHccCCCCHHHHHHHH
Confidence 4443377865 4444444 346765 34444421 1556788999999999999999884
No 31
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=77.65 E-value=1.4 Score=33.15 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHhcCCCcCHHHHHHHHHHhCCC
Q 014334 312 AEQLSQINGFGPFTRNNVLVCIGFY 336 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~~Lg~~ 336 (426)
...|..|||||++.+..+|.-+|-.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~ 27 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNI 27 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSH
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCH
Confidence 3678999999999999998666643
No 32
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=77.37 E-value=1.5 Score=40.25 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHhC
Q 014334 310 KLAEQLSQINGFGPFTRNNVLVCIG 334 (426)
Q Consensus 310 ea~e~L~~L~GIGpkTAd~IL~~Lg 334 (426)
+..+.|.+++|||||+|..||-.|+
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~ 93 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALP 93 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCC
Confidence 3445677777777777777764444
No 33
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=77.28 E-value=1.6 Score=40.92 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=12.3
Q ss_pred HHHHHHhcCCCcCHHHHHHHH
Q 014334 310 KLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 310 ea~e~L~~L~GIGpkTAd~IL 330 (426)
++.+.|.+++|||||+|..||
T Consensus 85 ~lf~~L~sv~GIGpk~A~~Il 105 (212)
T 2ztd_A 85 DLFLTLLSVSGVGPRLAMAAL 105 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHhcCcCCcCHHHHHHHH
Confidence 444555566666666666665
No 34
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=76.49 E-value=2.4 Score=31.89 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.5
Q ss_pred HHHHhcCCCcCHHHHHHHHHHhC
Q 014334 312 AEQLSQINGFGPFTRNNVLVCIG 334 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~~Lg 334 (426)
.+.|..++|||+++|..|...+.
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999964443
No 35
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=76.36 E-value=1.4 Score=33.79 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.8
Q ss_pred HHHHhcCCCcCHHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVLV 331 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~ 331 (426)
.+.|.++||||+++|..|+.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~ 45 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVE 45 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHH
Confidence 46799999999999999983
No 36
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=74.36 E-value=2 Score=39.82 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=9.5
Q ss_pred HHHhcCCCcCHHHHHHHH
Q 014334 313 EQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 313 e~L~~L~GIGpkTAd~IL 330 (426)
+.|.+++|||||+|..||
T Consensus 73 ~~L~~V~GIGpk~A~~iL 90 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAIL 90 (203)
T ss_dssp HHHHHSSSCCHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHH
Confidence 345555555555555554
No 37
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=74.33 E-value=2.8 Score=31.43 Aligned_cols=29 Identities=7% Similarity=-0.033 Sum_probs=22.7
Q ss_pred cHHHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 307 ~~eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
+.+.....|..+||||+++|.-++-.+|-
T Consensus 8 ~~~~~~~~L~~i~giG~~~a~~Ll~~fgs 36 (75)
T 1x2i_A 8 LAERQRLIVEGLPHVSATLARRLLKHFGS 36 (75)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Confidence 34556678999999999999999855553
No 38
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=72.67 E-value=3.9 Score=32.22 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=18.3
Q ss_pred HHHHhcCCCcCHHHHHHHHHHh
Q 014334 312 AEQLSQINGFGPFTRNNVLVCI 333 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~~L 333 (426)
.+.|..++|||+++|..|...+
T Consensus 50 ~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 50 REDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 3678999999999999997444
No 39
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=72.28 E-value=5 Score=39.24 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHHHHhCCCC
Q 014334 278 RILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYH 337 (426)
Q Consensus 278 yI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL~~Lg~~d 337 (426)
-+.++-++..+|.+..+..+. ..+--..+|+.-.|||.|||+-+|++||.++
T Consensus 384 dleeiermyeegrlseeayra--------aveiqlaeltkkegvgrktaerllrafgnpe 435 (519)
T 2csb_A 384 DLEEIERMYEEGRLSEEAYRA--------AVEIQLAELTKKEGVGRKTAERLLRAFGNPE 435 (519)
T ss_dssp CHHHHHHHHHHTSSCHHHHHH--------HHHHHHHHHHTSTTCCHHHHHHHHHHHSSHH
T ss_pred cHHHHHHHHHcccccHHHHHH--------HHHHHHHHHhhhcccchhHHHHHHHHhCCHH
Confidence 344555566677776665544 2344457899999999999999999999875
No 40
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=72.24 E-value=3.3 Score=31.95 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHhcCCCcCHHHHHHHHHHh
Q 014334 312 AEQLSQINGFGPFTRNNVLVCI 333 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~~L 333 (426)
.++|.+++|||+++|+.|...+
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 4679999999999999986433
No 41
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=72.12 E-value=1.5 Score=33.64 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHHCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 255 PRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 255 pe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
+-+|..++.++|...-|+|- +|+.|.+ .. . .. + .++|.+++|||+++++-+.
T Consensus 18 ~idiN~a~~~~L~~ipGIG~~~A~~Il~-------~r-~---~~---------s----~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 18 PVSLNEASLEELMALPGIGPVLARRIVE-------GR-P---YA---------R----VEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp SEETTTCCHHHHTTSTTCCHHHHHHHHH-------TC-C---CS---------S----GGGGGGSTTCCHHHHHHHG
T ss_pred ccChhhCCHHHHHhCCCCCHHHHHHHHH-------Hc-c---cC---------C----HHHHHhCCCCCHHHHHHHH
Confidence 45566678888887558886 4555544 22 1 11 2 3668899999999999874
No 42
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=70.38 E-value=3.6 Score=32.47 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIG 334 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg 334 (426)
......|..+||||+++|.-++..+|
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~fg 40 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTTFG 40 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 44567788999999999999985555
No 43
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=69.40 E-value=9.3 Score=30.76 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=38.9
Q ss_pred HHHHhcCCHHHHHHHCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 255 PRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 255 pe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
+-.|..++.++|...-|+|. .|+.|.+.-. ..|.+. +. +.|..++|||+++++.+.
T Consensus 31 ~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~--~~g~f~--------------s~----edL~~v~Gig~k~~~~l~ 87 (98)
T 2edu_A 31 LDLLNEGSARDLRSLQRIGPKKAQLIVGWRE--LHGPFS--------------QV----EDLERVEGITGKQMESFL 87 (98)
T ss_dssp HHHHHHSCHHHHHHSTTCCHHHHHHHHHHHH--HHCCCS--------------SG----GGGGGSTTCCHHHHHHHH
T ss_pred CeehhhCCHHHHHHCCCCCHHHHHHHHHHHH--hcCCcC--------------CH----HHHHhCCCCCHHHHHHHH
Confidence 45677788888887558997 4676666522 134431 22 348999999999999996
No 44
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=68.78 E-value=3.7 Score=32.63 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.9
Q ss_pred HHHHhcCCCcCHHHHHHHHHHhC
Q 014334 312 AEQLSQINGFGPFTRNNVLVCIG 334 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~~Lg 334 (426)
.+.|..++|||+++|+.|+..+.
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 36789999999999999974443
No 45
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=68.73 E-value=3.9 Score=32.47 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
......|..+||||+++|.-++..+|-
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~~fgs 54 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLTTFGS 54 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 445677889999999999999855653
No 46
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=66.69 E-value=9.7 Score=34.85 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=39.2
Q ss_pred cccCCCCHHHHhcCCHHHHHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHH
Q 014334 248 RIGNFPSPRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (426)
Q Consensus 248 ~~~~FPtpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTA 326 (426)
..|-|.+.++-.- ...|...-|+|-| |..|... +..+.|.+. =..+-.+.|.++||||+|+|
T Consensus 58 ~l~gf~~~~ek~~--f~~L~~v~GIGpk~A~~iL~~--------f~~~~l~~a-------I~~~d~~~L~~vpGIG~K~A 120 (191)
T 1ixr_A 58 SLYGFPDEENLAL--FELLLSVSGVGPKVALALLSA--------LPPRLLARA-------LLEGDARLLTSASGVGRRLA 120 (191)
T ss_dssp CEEEESSHHHHHH--HHHHHSSSCCCHHHHHHHHHH--------SCHHHHHHH-------HHTTCHHHHTTSTTCCHHHH
T ss_pred HhhccCCHHHHHH--HHHHhcCCCcCHHHHHHHHHh--------CChHHHHHH-------HHhCCHHHHHhCCCCCHHHH
Confidence 3677877766432 1245554578864 5555432 111111110 00112478999999999999
Q ss_pred HHHHHHh
Q 014334 327 NNVLVCI 333 (426)
Q Consensus 327 d~IL~~L 333 (426)
+-|...|
T Consensus 121 ~rI~~~l 127 (191)
T 1ixr_A 121 ERIALEL 127 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9996444
No 47
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=65.57 E-value=9.8 Score=41.31 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=50.1
Q ss_pred CCHHHHhcCCHHHHHHHCcCcHH-HHHHHHHH---------HHHHh-C-----C----------CChhHHHhhhhhcccc
Q 014334 253 PSPRELANLDESFLAKRCNLGYR-AGRILKLA---------RGIVD-G-----Q----------IQLRELEDMCNEASLT 306 (426)
Q Consensus 253 Ptpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA---------~~i~e-g-----~----------ldLe~L~~l~~~~~~~ 306 (426)
-++.+|..++.++|..+-|+|-| +..|.+-. +.+.. | + -+++.|.+.
T Consensus 469 ~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~A------- 541 (671)
T 2owo_A 469 HTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAA------- 541 (671)
T ss_dssp SSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTC-------
T ss_pred CCHHHHHhhCHHHhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhC-------
Confidence 57888888888888875588865 66665542 22221 1 0 011222211
Q ss_pred cHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCccccchHHHHHHHHh
Q 014334 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQV 352 (426)
Q Consensus 307 ~~eea~e~L~~L~GIGpkTAd~IL~~Lg~~dvfPvDthV~Ril~rl 352 (426)
+ .++|.+++|||+++|+.|.-.|. +-+.+.++.++
T Consensus 542 s----~eeL~~i~GIG~~~A~sI~~ff~-------~~~~~~~i~~L 576 (671)
T 2owo_A 542 S----IEELQKVPDVGIVVASHVHNFFA-------EESNRNVISEL 576 (671)
T ss_dssp C----HHHHTTSTTCCHHHHHHHHHHHT-------CHHHHHHHHHH
T ss_pred C----HHHHhhcCCCCHHHHHHHHHHHH-------hHHHHHHHHHH
Confidence 2 36899999999999999974343 34455555555
No 48
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=64.65 E-value=16 Score=36.41 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=38.9
Q ss_pred HHHHHCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH--HHhCCC
Q 014334 265 FLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGFY 336 (426)
Q Consensus 265 ~Lr~~~g~GyRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL--~~Lg~~ 336 (426)
++.+..|-.||++.-...|..|..-..++. +. ++|.+|||||+++|+.|- ..-|..
T Consensus 29 ~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~------------~~----~~l~~lpGIG~~~A~kI~E~l~tG~~ 86 (360)
T 2ihm_A 29 EAAGFEANEGRLLSFSRAASVLKSLPCPVA------------SL----SQLHGLPYFGEHSTRVIQELLEHGTC 86 (360)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCSSCCC------------SG----GGGTTCTTCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCcccC------------CH----HHHhcCCCCCHHHHHHHHHHHHcCCh
Confidence 444445655899888899988876443322 11 238999999999999995 345554
No 49
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=62.88 E-value=3.3 Score=31.94 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=19.7
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 311 LAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 311 a~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
....|..+||||+++|.-++..++-
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~fgs 46 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKYMGG 46 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHHHSC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 3456889999999999999855653
No 50
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=62.84 E-value=2 Score=35.47 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=41.2
Q ss_pred CCCHHHHhcCCHHHHHHHCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH
Q 014334 252 FPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 252 FPtpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL 330 (426)
++.+=.|-.++.++|...-|+|. +|+.|+. .|... + .++|+.++|||+++.+-+.
T Consensus 14 ~~~~vdiNtAs~~eL~~lpGIG~~~A~~IV~------~GpF~--------------s----~edL~~V~Gig~~~~e~l~ 69 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQYRGLYPTLAKLIVK------NAPYE--------------S----VEDVLNIPGLTERQKQILR 69 (97)
T ss_dssp GGTSEETTTSCGGGGGGSTTCTTHHHHHHHH------HCCCS--------------S----GGGGGGCTTCCHHHHHHHH
T ss_pred cCCceeCCcCCHHHHhHCCCCCHHHHHHHHH------cCCCC--------------C----HHHHHhccCCCHHHHHHHH
Confidence 45556677788888887568886 6888876 45432 2 4778899999999988884
No 51
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.78 E-value=18 Score=36.43 Aligned_cols=56 Identities=7% Similarity=-0.057 Sum_probs=38.9
Q ss_pred HHHHHCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH--HHhCCC
Q 014334 265 FLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGFY 336 (426)
Q Consensus 265 ~Lr~~~g~GyRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL--~~Lg~~ 336 (426)
++.+..|-.||++.-...|..|..-..++. .+ ++|.+|||||+++|+.|- ..-|..
T Consensus 48 ~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~---~~-------------~~l~~lpGIG~~ia~kI~E~l~tG~~ 105 (381)
T 1jms_A 48 ENDELRENEGSCLAFMRASSVLKSLPFPIT---SM-------------KDTEGIPCLGDKVKSIIEGIIEDGES 105 (381)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTCSSCCC---SG-------------GGGTTCSSCCHHHHHHHHHHHHHSSC
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHhCCcccc---CH-------------HHHhcCCCCcHHHHHHHHHHHHcCCc
Confidence 444445655899989999998876443322 11 238999999999999994 345554
No 52
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=62.68 E-value=5.7 Score=42.05 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHH
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLV 331 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~ 331 (426)
.+....|++++|||||+|..++-
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~ 115 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWL 115 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHH
Confidence 45678899999999999999974
No 53
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=60.97 E-value=9 Score=41.59 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=50.0
Q ss_pred CCHHHHhcCCHHHHHHHCcCcHH-HHHHHHH---------HHHHHh----------------CCCChhHHHhhhhhcccc
Q 014334 253 PSPRELANLDESFLAKRCNLGYR-AGRILKL---------ARGIVD----------------GQIQLRELEDMCNEASLT 306 (426)
Q Consensus 253 Ptpe~La~~~~e~Lr~~~g~GyR-AkyI~~l---------A~~i~e----------------g~ldLe~L~~l~~~~~~~ 306 (426)
-++.+|..+..++|...-|+|-| +..|.+- .+.+.. .--+++.|.+.
T Consensus 464 ~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgsl~~l~~A------- 536 (667)
T 1dgs_A 464 RDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEA------- 536 (667)
T ss_dssp SSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTC-------
T ss_pred CCHHHHHhcCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCCHHHHHhC-------
Confidence 47888888888888875578853 5555544 222222 11122222211
Q ss_pred cHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCccccchHHHHHHHHhh
Q 014334 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVH 353 (426)
Q Consensus 307 ~~eea~e~L~~L~GIGpkTAd~IL~~Lg~~dvfPvDthV~Ril~rly 353 (426)
+ .++|.+++|||+++|+.|...|+ +-+.+.++.++.
T Consensus 537 s----~eeL~~I~GIG~~~A~sI~~ff~-------~~~~~~~i~~L~ 572 (667)
T 1dgs_A 537 S----LEELIEVEEVGELTARAILETLK-------DPAFRDLVRRLK 572 (667)
T ss_dssp C----HHHHHTSTTCCHHHHHHHHHHHH-------CHHHHHHHHHHH
T ss_pred C----HHHHHhccCcCHHHHHHHHHHHh-------hHHHHHHHHHHH
Confidence 2 46899999999999999974443 334555555553
No 54
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=59.48 E-value=5.1 Score=32.37 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.2
Q ss_pred HHHHhcCCCcCHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL 330 (426)
.+.|.+|||||+++|..|+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il 57 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIV 57 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 3678999999999999997
No 55
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=58.07 E-value=18 Score=35.61 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHH--HHhCC
Q 014334 272 LGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGF 335 (426)
Q Consensus 272 ~GyRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL--~~Lg~ 335 (426)
-.||++.-...|..|..-..++. + ..+|.+|||||+++|+.|- ..-|.
T Consensus 32 ~~~rv~AYr~Aa~~l~~l~~~i~------------~----~~~l~~LpGIG~~~A~kI~E~l~tG~ 81 (335)
T 2fmp_A 32 AIHKYNAYRKAASVIAKYPHKIK------------S----GAEAKKLPGVGTKIAEKIDEFLATGK 81 (335)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCC------------C----HHHHHTSTTCCHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHHHHhCCcccc------------C----HHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 34899989999998876433322 2 1348999999999999995 34444
No 56
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=58.04 E-value=3.7 Score=35.89 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=17.5
Q ss_pred HHHHhcCCCcCHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL 330 (426)
.++|++||||||+.|.-|.
T Consensus 62 ~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 4788999999999999998
No 57
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=56.78 E-value=3.8 Score=33.75 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=17.8
Q ss_pred HHHHhcCCCcCHHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVLV 331 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL~ 331 (426)
.++|+.|||||++.|..|.-
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 37899999999999999973
No 58
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=55.32 E-value=7.4 Score=40.35 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=31.7
Q ss_pred cCCCCHHHHhcCCHHHHHHHCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhh--------------------hcccc--
Q 014334 250 GNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCN--------------------EASLT-- 306 (426)
Q Consensus 250 ~~FPtpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~eg~ldLe~L~~l~~--------------------~~~~~-- 306 (426)
..|-+..++..+++++|++ +|+.- +...|+.+-+.+.+| .+++.-..+-. +.+..
T Consensus 536 r~ygs~savr~~pv~elre-lg~sd~~ia~ikgip~~~~~~-~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g~~~~~~ 613 (685)
T 4gfj_A 536 RKYGSASAVRRLPVEELRE-LGFSDDEIAEIKGIPKKLREA-FDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAA 613 (685)
T ss_dssp HHSSCHHHHHHSCHHHHHT-TSCCHHHHHHHHTCCHHHHHH-SCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSCCGGGC-
T ss_pred HhhccHHHHHhccHHHHHH-cCCchhhHHHhcCCcHHHHhh-cCHHHHHHHHHHhccHHHHhhcCCHHHHhccCCCHHHH
Confidence 4688899999999999998 88764 455666665555553 23322111100 00000
Q ss_pred --cHHHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 307 --AYVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 307 --~~eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
--.-..+.|+.++||||+.|+-++-.++.
T Consensus 614 ~eik~p~~k~ll~~~gv~p~la~r~~e~~~~ 644 (685)
T 4gfj_A 614 AEIKGPEFKFLLNIEGVGPKLAERILEAVDY 644 (685)
T ss_dssp -------------------------------
T ss_pred HHhcChhHHHhhcccCCCHHHHHHHHHHhCC
Confidence 01334678999999999999999865554
No 59
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=53.53 E-value=5.2 Score=37.32 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHhcCCCcCHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL 330 (426)
.++|..|||||+++|..|+
T Consensus 131 ~~eL~~LpGIG~k~A~~II 149 (205)
T 2i5h_A 131 MHQLELLPGVGKKMMWAII 149 (205)
T ss_dssp SBGGGGSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHH
Confidence 4688999999999999997
No 60
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=52.61 E-value=7.3 Score=31.36 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHH
Q 014334 274 YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV 329 (426)
Q Consensus 274 yRAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~I 329 (426)
+++.....++..+..-.+.+. + -+++..|+|||+++|+.|
T Consensus 35 k~~~~Y~KA~~sLk~~P~~i~------------s----~~e~~~L~giG~ki~~~L 74 (87)
T 2kp7_A 35 HTRFVFQKALRSLQRYPLPLR------------S----GKEAKILQHFGDRLCRML 74 (87)
T ss_dssp TTHHHHHHHHHHHHHCCSCCC------------S----HHHHHTCTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCC------------C----HHHHHHhhcccHHHHHHH
Confidence 345555666666666544332 2 266789999999999988
No 61
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=52.52 E-value=12 Score=39.60 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred HHHHCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHHH
Q 014334 266 LAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (426)
Q Consensus 266 Lr~~~g~Gy-RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL~ 331 (426)
|.+.-|+|- +|..|.+ .|-.+++.|.+. -....|..+||||+|||+-|+.
T Consensus 99 L~~v~GVGpk~A~~i~~------~G~~s~edL~~a----------~~~~~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWL------AGIDSLERLREA----------AESGELAGLKGFGAKSAATILE 149 (578)
T ss_dssp HTTSTTCCHHHHHHHHH------TTCCSHHHHHHH----------HHHTTTTTSTTCCHHHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHH------cCCCCHHHHHHH----------HhhCccccCCCCCHHHHHHHHH
Confidence 433347887 4666653 265666666542 0123789999999999999953
No 62
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=52.45 E-value=13 Score=39.25 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHCcCcHHHHHHHHHHHHHHh--CCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHHHHhC----CCC
Q 014334 264 SFLAKRCNLGYRAGRILKLARGIVD--GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIG----FYH 337 (426)
Q Consensus 264 e~Lr~~~g~GyRAkyI~~lA~~i~e--g~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL~~Lg----~~d 337 (426)
..|.+.-|+|-| +|..+.+ |-.+++.|... -....|.++||||+|||+-|+.+|. +..
T Consensus 93 ~~l~~v~GvGpk------~A~~~~~~lg~~~~~~l~~a----------~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~ 156 (575)
T 3b0x_A 93 LEVMEVPGVGPK------TARLLYEGLGIDSLEKLKAA----------LDRGDLTRLKGFGPKRAERIREGLALAQAAGK 156 (575)
T ss_dssp HHHHTSTTTCHH------HHHHHHHTSCCCSHHHHHHH----------HHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCCcCHH------HHHHHHHhcCCCCHHHHHHH----------HHcCCcccCCCCCccHHHHHHHHHHHHHHhcc
Confidence 345544588875 2344443 55666666653 1113489999999999999953332 334
Q ss_pred ccc
Q 014334 338 VIP 340 (426)
Q Consensus 338 vfP 340 (426)
.+|
T Consensus 157 r~~ 159 (575)
T 3b0x_A 157 RRP 159 (575)
T ss_dssp CEE
T ss_pred cee
Confidence 567
No 63
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=51.69 E-value=6.1 Score=34.53 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=36.6
Q ss_pred HHHhcCCHHHHHHHCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHH
Q 014334 256 RELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV 329 (426)
Q Consensus 256 e~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~I 329 (426)
=+|-.++.++|..+-|+|= +|+.|+ .+|... + .+.|+.++|||+++-+.+
T Consensus 55 IniNtA~~~eL~~LpGiGp~~A~~II------~~GpF~--------------s----vedL~~V~GIg~k~~e~l 105 (134)
T 1s5l_U 55 IDLNNTNIAAFIQYRGLYPTLAKLIV------KNAPYE--------------S----VEDVLNIPGLTERQKQIL 105 (134)
T ss_dssp EETTTSCGGGGGGSTTCTHHHHHHHH------HTCCCS--------------S----GGGGGGCTTCCHHHHHHH
T ss_pred eeCcccCHHHHHHCCCCCHHHHHHHH------HcCCCC--------------C----HHHHHhCCCCCHHHHHHH
Confidence 3456678888887558885 688887 356542 2 477899999999988777
No 64
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=51.01 E-value=9 Score=35.37 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=36.7
Q ss_pred ccCCCCHHHHhcCCHHHHHHHCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHH
Q 014334 249 IGNFPSPRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (426)
Q Consensus 249 ~~~FPtpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd 327 (426)
.|-|-+.++-.- ...|...-|+|-| |..|... +..+.|.+. =..+-.+.|.++||||+|+|+
T Consensus 60 l~gf~~~~ek~~--f~~L~~V~GIGpk~A~~iL~~--------f~~~~l~~a-------I~~~d~~~L~~vpGIG~K~A~ 122 (203)
T 1cuk_A 60 LYGFNNKQERTL--FKELIKTNGVGPKLALAILSG--------MSAQQFVNA-------VEREEVGALVKLPGIGKKTAE 122 (203)
T ss_dssp EEEESSHHHHHH--HHHHHHSSSCCHHHHHHHHHH--------SCHHHHHHH-------HHTTCHHHHHTSTTCCHHHHH
T ss_pred hhccCCHHHHHH--HHHHhcCCCcCHHHHHHHHhh--------CChHHHHHH-------HHhCCHHHHhhCCCCCHHHHH
Confidence 566777766432 1245554578864 5544432 111111110 001124789999999999999
Q ss_pred HHH
Q 014334 328 NVL 330 (426)
Q Consensus 328 ~IL 330 (426)
-|.
T Consensus 123 rI~ 125 (203)
T 1cuk_A 123 RLI 125 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 994
No 65
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=50.82 E-value=19 Score=27.56 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=31.6
Q ss_pred cCCCCHHHHhcCCHHHHHHHCcCcH-HHHHHHHHHHH
Q 014334 250 GNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARG 285 (426)
Q Consensus 250 ~~FPtpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~ 285 (426)
.-|-|.++|+.++.++|....|++- ||..|+..|+.
T Consensus 26 ~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 26 RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp TTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 4577999999999999998667775 89999999987
No 66
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=42.71 E-value=18 Score=32.98 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 310 KLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 310 ea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
.....|..+||||+++|..++-.+|-
T Consensus 159 ~~~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 159 WQLYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 34457889999999999999855654
No 67
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=41.30 E-value=18 Score=32.98 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=17.7
Q ss_pred HHHhcCCCcCHHHHHHHHHHh
Q 014334 313 EQLSQINGFGPFTRNNVLVCI 333 (426)
Q Consensus 313 e~L~~L~GIGpkTAd~IL~~L 333 (426)
++|..++|||+++|+.|...+
T Consensus 194 e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 194 AEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHHH
Confidence 578999999999999996434
No 68
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=39.09 E-value=2.3e+02 Score=25.86 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=48.8
Q ss_pred CHHHHhcCCHHHHHHHCc-Cc-----HHHHHHHHHHHHHHh-----CCCChhHHHhhhh--------------hcccccH
Q 014334 254 SPRELANLDESFLAKRCN-LG-----YRAGRILKLARGIVD-----GQIQLRELEDMCN--------------EASLTAY 308 (426)
Q Consensus 254 tpe~La~~~~e~Lr~~~g-~G-----yRAkyI~~lA~~i~e-----g~ldLe~L~~l~~--------------~~~~~~~ 308 (426)
+|+.+|..+++++.+++. .| -|.+.++.=|+++.+ |.++ +.|....+ .+...-.
T Consensus 64 D~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~-~ylW~fv~~~p~~~~~~~~~~vp~~t~~S 142 (186)
T 2jg6_A 64 EPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFS-KFLWSYVNGKPKDLQYEHASDRITVDDTA 142 (186)
T ss_dssp CHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHH-HHHHGGGTTSCEECCCCSGGGCCSCCHHH
T ss_pred CHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHhcCCCCCccCCccchhhcCCCCHHH
Confidence 689999999988887542 22 366667776777663 3221 12222211 0000112
Q ss_pred HHHHHHHh--cCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLS--QINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~--~L~GIGpkTAd~IL~~Lg~ 335 (426)
+.+-+.|. .++=|||-|+-..|.+.|.
T Consensus 143 ~~lsKdLKkrGFkFvGpt~~YafmQA~G~ 171 (186)
T 2jg6_A 143 TQLSKDLKQYGFKFLGPVTVFSFLEAAGL 171 (186)
T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeeechHHHHHHHHHhcc
Confidence 35556675 5999999999888877775
No 69
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=35.43 E-value=25 Score=29.66 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCCC-Cccc---cchHHHHHHHHh
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGFY-HVIP---TDSETIRHLKQV 352 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~~-dvfP---vDthV~Ril~rl 352 (426)
..+.-.|+.|.|||+.+|..|+.-+|-. +.-. .|-.+.++..-+
T Consensus 12 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 12 KHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred CEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 4566789999999999999998545542 2222 244555555443
No 70
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=32.30 E-value=9.5 Score=36.21 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHhcCCCcCHHHHHHHH-HHhCCCC
Q 014334 312 AEQLSQINGFGPFTRNNVL-VCIGFYH 337 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL-~~Lg~~d 337 (426)
...|..|+||||++|..++ .+++-.+
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~sve 40 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFESVE 40 (241)
T ss_dssp ---------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCCHH
Confidence 3467788888888888877 3344333
No 71
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=31.08 E-value=30 Score=32.47 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=21.2
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCC
Q 014334 311 LAEQLSQINGFGPFTRNNVLVCIGFY 336 (426)
Q Consensus 311 a~e~L~~L~GIGpkTAd~IL~~Lg~~ 336 (426)
....|..|||||+++|..+|..||-.
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll~~FgSl 191 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLIEHFGSL 191 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHCSH
T ss_pred ccccccCCCCcCHHHHHHHHHHcCCH
Confidence 45678899999999999998666643
No 72
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.00 E-value=32 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
..+.-.|+.|.|||+.+|..|+..+|-
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gi 45 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGL 45 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTC
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCC
Confidence 456778999999999999999854543
No 73
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.53 E-value=32 Score=30.47 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
..+.-.|+.|.|||+.+|..|+..+|-
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gi 50 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADI 50 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCC
Confidence 456788999999999999999855553
No 74
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=30.50 E-value=26 Score=30.85 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
..+.-.|+.|.|||+.+|..|+..+|-
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gi 52 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADV 52 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTC
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCC
Confidence 344568999999999999999854543
No 75
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=30.43 E-value=11 Score=35.86 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHhcCCCcCHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL 330 (426)
.+.|.+++|||+++|+-|+
T Consensus 47 ~~eL~~v~GIG~ktAe~I~ 65 (241)
T 1vq8_Y 47 QSALADVSGIGNALAARIK 65 (241)
T ss_dssp -------------------
T ss_pred HHHHHhccCCCHHHHHHHH
Confidence 5789999999999999996
No 76
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=27.05 E-value=40 Score=30.01 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
..+.-.|+.|.|||+.+|..|+..+|-
T Consensus 26 k~v~~aLt~I~GIG~~~A~~I~~~~gi 52 (155)
T 2xzm_M 26 RITPIALTGIRGIGRRFAYIICKVLKI 52 (155)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CEEEEeeecccccCHHHHHHHHHHcCC
Confidence 345678999999999999999855554
No 77
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=25.75 E-value=31 Score=33.47 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=18.1
Q ss_pred HHHhcCCCcCHHHHHHHHHHhCC
Q 014334 313 EQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 313 e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
+-+..+||||||||--+|--+|-
T Consensus 203 DniPGVpGIG~KTA~kLL~~~gs 225 (290)
T 1exn_A 203 DNIRGVEGIGAKRGYNIIREFGN 225 (290)
T ss_dssp GTBCCCTTCCHHHHHHHHHHHCS
T ss_pred CCCCCCCcCCHhHHHHHHHHcCC
Confidence 34567999999999998865554
No 78
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=24.70 E-value=42 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHhcCCCcCHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL 330 (426)
.+.|+.++|+|+++.+-|.
T Consensus 40 ~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 40 EEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 4789999999999999984
No 79
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=24.20 E-value=48 Score=33.50 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=34.5
Q ss_pred ccCCCCHHHHhcCCHHHHHHHCcCcH-HHHHHHHHHHHHHh
Q 014334 249 IGNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (426)
Q Consensus 249 ~~~FPtpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~e 288 (426)
...|-|.+.|.+++.++|.+.-|+|- ||+.|.+....+..
T Consensus 332 v~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 332 VRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKH 372 (377)
T ss_dssp HHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHHhc
Confidence 46799999999999999988568995 89999998887764
No 80
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=23.47 E-value=17 Score=34.24 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHhCCCCc
Q 014334 311 LAEQLSQINGFGPFTRNNVLVCIGFYHV 338 (426)
Q Consensus 311 a~e~L~~L~GIGpkTAd~IL~~Lg~~dv 338 (426)
....|..|||||+++|.-+|..+|-.+.
T Consensus 171 ~~s~L~~IpGIG~k~ak~Ll~~FGSl~~ 198 (226)
T 3c65_A 171 FHSVLDDIPGVGEKRKKALLNYFGSVKK 198 (226)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCCHHHHHHHHHHhCCHHH
Confidence 3567899999999999999855554443
No 81
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=22.44 E-value=55 Score=26.30 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHhcCCCcCHHHHHHHH
Q 014334 312 AEQLSQINGFGPFTRNNVL 330 (426)
Q Consensus 312 ~e~L~~L~GIGpkTAd~IL 330 (426)
.+.|+.++|+|+|+.+-|.
T Consensus 43 e~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 43 EVELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhhccccCcccHHHHH
Confidence 4789999999999999984
No 82
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=21.08 E-value=98 Score=22.78 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=25.1
Q ss_pred ccCCCCHHHHhcCCHHHHHHHCcCcHHHHHHHHH
Q 014334 249 IGNFPSPRELANLDESFLAKRCNLGYRAGRILKL 282 (426)
Q Consensus 249 ~~~FPtpe~La~~~~e~Lr~~~g~GyRAkyI~~l 282 (426)
...|-+.+.|.+++.|+|.+.+|-.-+|+.|.+.
T Consensus 21 L~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~ 54 (63)
T 2a1j_A 21 MHHVKNIAELAALSQDELTSILGNAANAKQLYDF 54 (63)
T ss_dssp HHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHH
Confidence 4679999999999999999854422236766543
No 83
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=20.96 E-value=38 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCC
Q 014334 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (426)
Q Consensus 309 eea~e~L~~L~GIGpkTAd~IL~~Lg~ 335 (426)
..+.-.|+.|.|||+.+|..|+..+|-
T Consensus 13 k~v~~aLt~I~GIG~~~A~~I~~~~gi 39 (126)
T 2vqe_M 13 KRVDVALTYIYGIGKARAKEALEKTGI 39 (126)
T ss_dssp SBHHHHHTTSSSCCSHHHHHHTTTTTC
T ss_pred cEeeeehhccccccHHHHHHHHHHcCC
Confidence 345678999999999999999854443
No 84
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=20.91 E-value=44 Score=32.96 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=12.8
Q ss_pred cCCCcCHHHHHHHHH
Q 014334 317 QINGFGPFTRNNVLV 331 (426)
Q Consensus 317 ~L~GIGpkTAd~IL~ 331 (426)
.|||||||||--++.
T Consensus 236 gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQ 250 (341)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 489999999988873
No 85
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=20.58 E-value=47 Score=33.58 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHhCCCChhHHHhhhhhcccccHHHHHHHHhcCCCcCHHHHHHHHHHh
Q 014334 282 LARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCI 333 (426)
Q Consensus 282 lA~~i~eg~ldLe~L~~l~~~~~~~~~eea~e~L~~L~GIGpkTAd~IL~~L 333 (426)
+|+.+.+.-.+++.+.+. + .++|..+.|||++.|..|--+|
T Consensus 327 iae~Lv~~FGsLq~Il~A-------S----~eEL~~VeGIGe~rAr~IregL 367 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKA-------S----VEDLKKVEGIGEKRARAISESI 367 (377)
T ss_dssp HHHHHHHHHCSHHHHTTC-------C----HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhC-------C----HHHHHhccCccHHHHHHHHHHH
Confidence 366666644455555543 3 4788999999999999985333
No 86
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=20.27 E-value=47 Score=32.57 Aligned_cols=22 Identities=23% Similarity=0.307 Sum_probs=16.5
Q ss_pred cCCCcCHHHHHHHHHHhCCCCc
Q 014334 317 QINGFGPFTRNNVLVCIGFYHV 338 (426)
Q Consensus 317 ~L~GIGpkTAd~IL~~Lg~~dv 338 (426)
.+||||+|||--++..+|-.+.
T Consensus 238 Gv~GIG~KtA~kLi~~~gsle~ 259 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYGKIEK 259 (346)
T ss_dssp CSTTCCHHHHHHHHHHSSCC--
T ss_pred CCCCcCHHHHHHHHHHcCCHHH
Confidence 7999999999988865565443
Done!