RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014334
         (426 letters)



>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
           {Helicobacter pylori [TaxId: 210]}
          Length = 217

 Score = 33.2 bits (75), Expect = 0.037
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 249 IGNFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEAS 304
             +  + +++A ++ S LA+     G+   +A R++ L+  I+         +       
Sbjct: 62  NDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQE----- 116

Query: 305 LTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQM 364
                   E L    G G  + + +L       V+  D  +   LK++         +Q 
Sbjct: 117 -----VTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQH 171

Query: 365 IAESIYGK--YAPFQFLAYWSELWHFYEK------RFGK 395
             E    +   +          L   Y +       F K
Sbjct: 172 FFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSK 210


>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 183

 Score = 30.9 bits (70), Expect = 0.16
 Identities = 9/37 (24%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 66  EQQDALLAQVKRMLRLSEADERNVRDF---KRIVRQV 99
           +  +A+  ++++M+R+ + D+ NV      KR++ Q+
Sbjct: 75  DNAEAIADEIEKMIRVYQDDDTNVEPMYDGKRLLVQL 111


>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina
           barkeri [TaxId: 2208]}
          Length = 184

 Score = 30.5 bits (69), Expect = 0.23
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 66  EQQDALLAQVKRMLRLSEADERNVRDF---KRIVRQV 99
              DA+   VK+++++ E D+ NV      K ++ Q 
Sbjct: 76  GNADAIAENVKKLVQVDEGDDTNVIKVKGGKSLLIQS 112


>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 187

 Score = 30.5 bits (69), Expect = 0.23
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 66  EQQDALLAQVKRMLRLSEADERNVRDF---KRIVRQV 99
              +++ A  K M++++E D+ NV      KR + QV
Sbjct: 79  GNAESIAAAAKEMIQVTEDDDTNVELLGGGKRALVQV 115


>d1xvha2 a.8.1.2 (A:73-128) Ebh protein {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 56

 Score = 26.7 bits (58), Expect = 0.86
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 54 NSASGSAPSLSQEQQDALLAQVKRMLRLSEAD 85
           +A   A  L+Q+Q+DAL AQ     R+S A 
Sbjct: 14 ITAINGASDLNQKQKDALKAQANGAQRVSNAQ 45


>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima
           [TaxId: 2336]}
          Length = 189

 Score = 27.4 bits (59), Expect = 2.5
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 77  RMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSG-RVFRSPTLFEDMVKCMLLCN 135
            M+ +S    R    F R+VR +A++  +E  ++       + R+           LL N
Sbjct: 3   HMVPISFVFNR----FPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRN 58

Query: 136 CQWPRTLSMARALCELQWELQHC 158
                       + + +  +   
Sbjct: 59  AIDHGIEPKEERIAKGKPPIGTL 81


>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal
           domain {Thermoanaerobacterium thermosaccharolyticum
           [TaxId: 1517]}
          Length = 397

 Score = 27.1 bits (59), Expect = 4.6
 Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 20/139 (14%)

Query: 52  VRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEES---Q 108
           + N A+G      +E  D    ++ R+   S  D + +   K +   +  +  +     +
Sbjct: 229 MINIANGGGVYDQKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYR 288

Query: 109 YMTDFSGRV-FRSPTLFEDMVKCMLLCNCQWPRTLSMARALCE--------LQWELQHCS 159
           Y  D  G              +   L       T                 ++   +  +
Sbjct: 289 YNHDGYGEPSKTELYHGAGKGRLWPLL------TGERGMYEIAAGKDATPYVKAMEKFAN 342

Query: 160 PS--ISEDFIPQTPAGKES 176
               ISE     T    +S
Sbjct: 343 EGGIISEQVWEDTGLPTDS 361


>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 497

 Score = 27.2 bits (60), Expect = 4.9
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 71  LLAQVKRMLRLSEADERNVRDFKRIVRQVA------QEEGEESQYMTDFSGRVFRSPTLF 124
           L+ + K +  L+E +   VR   R +R           E  E+  +   +    ++   F
Sbjct: 67  LVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKAKDDF 126

Query: 125 EDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSK 184
                          + +S+A+   E     +    ++ + +          K  + + K
Sbjct: 127 SKFEPW-------LDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEK 179

Query: 185 VASKLTSRIAESKASSEDYMNLK 207
               L  +I E      ++   K
Sbjct: 180 KLKPLLDKILEEGKVPREHPLEK 202


>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 190

 Score = 25.9 bits (56), Expect = 7.0
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 124 FEDMVKCMLLCNCQWPRTLSMARALCEL 151
            E +   +   N    R   M   LC+ 
Sbjct: 3   IECLFSFICSSNNNIARITGMVERLCQA 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,528,888
Number of extensions: 69072
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 13
Length of query: 426
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,199,356
Effective search space: 405382328
Effective search space used: 405382328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)