Query 014338
Match_columns 426
No_of_seqs 274 out of 1561
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2526 Predicted aminopeptida 100.0 6.2E-91 1.3E-95 689.2 28.8 398 10-425 13-419 (555)
2 PF04389 Peptidase_M28: Peptid 100.0 2.1E-29 4.6E-34 230.7 15.2 176 220-410 1-179 (179)
3 PF05450 Nicastrin: Nicastrin; 100.0 3.2E-28 6.9E-33 233.1 19.2 202 220-424 1-233 (234)
4 PRK10199 alkaline phosphatase 99.9 8.1E-25 1.7E-29 219.4 21.2 171 198-383 95-278 (346)
5 KOG2195 Transferrin receptor a 99.9 1.7E-23 3.8E-28 225.7 19.6 229 147-401 282-515 (702)
6 KOG2657 Transmembrane glycopro 99.8 1.8E-18 3.9E-23 176.6 18.6 271 131-407 59-372 (596)
7 COG2234 Iap Predicted aminopep 99.8 5.3E-19 1.2E-23 183.6 15.1 195 198-412 182-382 (435)
8 KOG2194 Aminopeptidases of the 99.6 7.5E-15 1.6E-19 159.3 16.6 190 193-410 121-314 (834)
9 KOG3946 Glutaminyl cyclase [Po 99.4 4.1E-12 8.9E-17 122.2 12.5 205 199-424 104-336 (338)
10 COG4882 Predicted aminopeptida 99.4 4.6E-11 9.9E-16 118.5 20.0 263 54-402 69-342 (486)
11 PF09940 DUF2172: Domain of un 99.3 4.9E-10 1.1E-14 112.7 19.7 200 181-421 102-303 (386)
12 TIGR03176 AllC allantoate amid 98.6 1.7E-07 3.7E-12 97.2 9.4 79 201-293 56-139 (406)
13 TIGR01879 hydantase amidase, h 98.5 4.2E-07 9.2E-12 93.9 9.6 79 201-293 54-137 (401)
14 PRK06133 glutamate carboxypept 98.4 1.2E-06 2.7E-11 90.7 11.6 96 200-310 87-195 (410)
15 PF01546 Peptidase_M20: Peptid 98.4 7.8E-06 1.7E-10 74.5 14.7 168 223-421 1-188 (189)
16 PRK12890 allantoate amidohydro 98.4 1.2E-06 2.5E-11 90.9 9.7 80 201-294 61-145 (414)
17 PRK13590 putative bifunctional 98.4 1.1E-06 2.4E-11 95.5 9.5 79 199-291 236-319 (591)
18 PRK13799 unknown domain/N-carb 98.4 1.1E-06 2.5E-11 95.4 9.3 80 199-292 236-320 (591)
19 TIGR01910 DapE-ArgE acetylorni 98.3 2.2E-06 4.7E-11 87.5 9.4 99 201-312 52-167 (375)
20 PRK09133 hypothetical protein; 98.3 4.1E-06 8.8E-11 88.4 10.9 97 200-308 88-201 (472)
21 PRK08596 acetylornithine deace 98.3 4.6E-06 9.9E-11 86.7 10.4 87 200-294 62-165 (421)
22 PRK12891 allantoate amidohydro 98.2 5.8E-06 1.3E-10 85.8 9.4 78 201-292 63-145 (414)
23 TIGR01883 PepT-like peptidase 98.2 7.8E-06 1.7E-10 82.8 9.9 84 200-294 49-146 (361)
24 PRK13983 diaminopimelate amino 98.2 9.1E-06 2E-10 83.2 10.4 100 200-310 63-180 (400)
25 PRK13381 peptidase T; Provisio 98.2 1.1E-05 2.4E-10 83.3 11.1 85 200-294 54-184 (404)
26 COG4310 Uncharacterized protei 98.1 2.9E-05 6.3E-10 76.5 12.5 172 219-422 178-352 (435)
27 PRK09104 hypothetical protein; 98.1 1.5E-05 3.3E-10 83.9 10.8 99 201-310 69-189 (464)
28 PRK05469 peptidase T; Provisio 98.1 2.1E-05 4.6E-10 81.4 11.1 85 200-293 55-185 (408)
29 PRK09290 allantoate amidohydro 98.1 1.4E-05 3.1E-10 82.8 9.8 80 201-294 60-144 (413)
30 PRK07906 hypothetical protein; 98.1 1.1E-05 2.5E-10 83.7 9.1 87 200-295 51-154 (426)
31 PRK12893 allantoate amidohydro 98.1 1.4E-05 3E-10 82.7 9.4 80 201-294 63-147 (412)
32 PRK12892 allantoate amidohydro 98.1 1.5E-05 3.3E-10 82.3 9.6 79 201-294 62-145 (412)
33 PRK08588 succinyl-diaminopimel 98.1 2.1E-05 4.5E-10 80.3 10.1 83 200-294 48-147 (377)
34 TIGR01882 peptidase-T peptidas 98.0 2.4E-05 5.3E-10 81.1 10.1 84 200-293 57-187 (410)
35 PRK07473 carboxypeptidase; Pro 98.0 4.3E-05 9.3E-10 78.4 11.0 98 201-311 62-172 (376)
36 PF04114 Gaa1: Gaa1-like, GPI 98.0 0.0005 1.1E-08 73.5 19.3 166 199-384 2-201 (504)
37 TIGR01880 Ac-peptdase-euk N-ac 98.0 4.7E-05 1E-09 78.4 10.6 99 200-310 57-173 (400)
38 TIGR01893 aa-his-dipept aminoa 97.9 3.3E-05 7.1E-10 81.8 9.2 83 201-294 47-152 (477)
39 PRK06915 acetylornithine deace 97.9 4.1E-05 8.8E-10 79.5 9.7 86 199-294 79-181 (422)
40 PRK07907 hypothetical protein; 97.9 5.5E-05 1.2E-09 79.3 10.7 97 200-311 70-183 (449)
41 PRK13013 succinyl-diaminopimel 97.9 5.9E-05 1.3E-09 78.2 10.6 84 200-293 71-169 (427)
42 PRK07338 hypothetical protein; 97.9 5.1E-05 1.1E-09 78.2 10.0 84 201-295 81-177 (402)
43 TIGR03107 glu_aminopep glutamy 97.9 0.00024 5.2E-09 72.5 14.6 153 239-422 174-340 (350)
44 TIGR01892 AcOrn-deacetyl acety 97.8 5.8E-05 1.3E-09 76.3 8.7 83 200-295 46-144 (364)
45 PRK08262 hypothetical protein; 97.8 9.3E-05 2E-09 78.4 10.6 86 201-295 98-202 (486)
46 TIGR01891 amidohydrolases amid 97.8 0.00011 2.5E-09 74.7 10.8 97 200-311 43-150 (363)
47 PRK08201 hypothetical protein; 97.8 8.9E-05 1.9E-09 77.9 10.2 98 201-310 67-181 (456)
48 PRK13009 succinyl-diaminopimel 97.8 0.0001 2.2E-09 74.9 10.3 84 200-295 47-148 (375)
49 PRK07079 hypothetical protein; 97.8 0.00011 2.5E-09 77.4 10.6 87 200-295 72-176 (469)
50 KOG2275 Aminoacylase ACY1 and 97.8 0.00044 9.6E-09 70.8 13.8 86 200-294 74-177 (420)
51 PRK04443 acetyl-lysine deacety 97.7 0.00011 2.5E-09 74.3 9.1 90 201-310 49-146 (348)
52 PRK08652 acetylornithine deace 97.7 9.9E-05 2.1E-09 74.1 8.4 71 219-295 55-133 (347)
53 PRK13007 succinyl-diaminopimel 97.7 0.00013 2.9E-09 73.5 9.3 94 201-311 50-155 (352)
54 PRK07522 acetylornithine deace 97.7 0.00018 3.8E-09 73.5 9.9 83 200-295 52-150 (385)
55 PRK06837 acetylornithine deace 97.7 0.00017 3.6E-09 75.2 9.9 86 199-293 82-184 (427)
56 PRK06446 hypothetical protein; 97.7 0.00018 4E-09 75.1 9.9 84 200-295 50-150 (436)
57 PRK09864 putative peptidase; P 97.7 0.00057 1.2E-08 69.9 13.0 157 239-422 171-340 (356)
58 PF05343 Peptidase_M42: M42 gl 97.6 0.00066 1.4E-08 67.7 12.4 145 241-414 132-291 (292)
59 PRK05111 acetylornithine deace 97.6 0.00019 4.1E-09 73.3 8.8 81 200-294 60-156 (383)
60 PRK06156 hypothetical protein; 97.6 0.00033 7.1E-09 75.1 10.8 84 219-311 109-213 (520)
61 PRK13004 peptidase; Reviewed 97.6 0.00038 8.2E-09 71.8 10.6 82 201-294 59-158 (399)
62 PRK08651 succinyl-diaminopimel 97.6 0.0003 6.6E-09 72.1 9.5 81 200-295 63-159 (394)
63 TIGR01900 dapE-gram_pos succin 97.5 0.00037 8.1E-09 71.4 9.7 98 202-310 42-168 (373)
64 TIGR01902 dapE-lys-deAc N-acet 97.5 0.00035 7.6E-09 70.3 9.0 90 201-312 40-137 (336)
65 PRK08554 peptidase; Reviewed 97.5 0.00058 1.3E-08 71.7 10.4 97 201-312 53-165 (438)
66 PLN02280 IAA-amino acid hydrol 97.4 0.00078 1.7E-08 71.6 10.6 82 200-294 140-232 (478)
67 TIGR01886 dipeptidase dipeptid 97.4 0.00042 9.2E-09 73.3 8.3 73 219-295 78-165 (466)
68 COG0624 ArgE Acetylornithine d 97.4 0.00082 1.8E-08 69.4 10.2 103 199-311 61-180 (409)
69 COG1363 FrvX Cellulase M and r 97.4 0.003 6.4E-08 64.5 13.6 155 238-422 175-345 (355)
70 PRK09961 exoaminopeptidase; Pr 97.4 0.0019 4.1E-08 65.8 12.3 157 238-421 161-331 (344)
71 TIGR01246 dapE_proteo succinyl 97.4 0.00096 2.1E-08 67.9 9.9 82 201-294 45-144 (370)
72 PLN02693 IAA-amino acid hydrol 97.4 0.0011 2.4E-08 69.7 10.5 82 200-294 90-182 (437)
73 PRK15026 aminoacyl-histidine d 97.3 0.00076 1.6E-08 71.8 9.2 96 201-312 53-171 (485)
74 PRK07318 dipeptidase PepV; Rev 97.3 0.00061 1.3E-08 71.9 8.2 84 202-295 68-166 (466)
75 PRK00466 acetyl-lysine deacety 97.3 0.00059 1.3E-08 68.9 7.8 67 220-294 61-135 (346)
76 PRK07205 hypothetical protein; 97.3 0.00086 1.9E-08 70.3 9.2 72 219-294 75-163 (444)
77 TIGR03106 trio_M42_hydro hydro 97.2 0.0052 1.1E-07 62.7 13.4 149 241-420 181-339 (343)
78 TIGR01887 dipeptidaselike dipe 97.2 0.0012 2.7E-08 69.5 9.0 72 219-294 67-153 (447)
79 TIGR03526 selenium_YgeY putati 96.8 0.0055 1.2E-07 63.1 9.5 82 201-294 57-156 (395)
80 TIGR03320 ygeY M20/DapE family 96.8 0.008 1.7E-07 61.9 10.3 82 201-294 57-156 (395)
81 PRK08737 acetylornithine deace 96.3 0.012 2.6E-07 60.3 7.9 74 200-294 54-143 (364)
82 COG4187 RocB Arginine degradat 96.2 0.052 1.1E-06 56.4 11.5 106 199-315 64-210 (553)
83 KOG3566 Glycosylphosphatidylin 94.8 2.7 5.9E-05 45.3 18.5 79 196-295 116-194 (617)
84 COG1473 AbgB Metal-dependent a 91.4 1.5 3.3E-05 45.7 10.5 82 201-294 57-149 (392)
85 KOG2276 Metalloexopeptidases [ 87.6 2.6 5.6E-05 43.8 8.5 89 218-310 90-195 (473)
86 PRK02256 putative aminopeptida 84.9 4.4 9.6E-05 43.1 8.9 162 238-418 255-457 (462)
87 PTZ00371 aspartyl aminopeptida 80.7 13 0.00028 39.7 10.5 166 238-418 246-453 (465)
88 PRK02813 putative aminopeptida 76.7 20 0.00044 37.8 10.4 158 238-413 229-421 (428)
89 TIGR03106 trio_M42_hydro hydro 62.7 7.4 0.00016 39.7 3.5 29 199-233 44-72 (343)
90 PF05343 Peptidase_M42: M42 gl 61.1 5.9 0.00013 39.5 2.4 26 202-233 2-27 (292)
91 PRK09961 exoaminopeptidase; Pr 60.2 7.8 0.00017 39.5 3.1 28 199-233 41-68 (344)
92 PF02225 PA: PA domain; Inter 57.8 74 0.0016 25.4 8.1 70 73-165 30-100 (101)
93 TIGR03107 glu_aminopep glutamy 51.4 13 0.00028 38.1 3.0 30 199-233 39-68 (350)
94 COG1363 FrvX Cellulase M and r 51.0 13 0.00027 38.4 2.8 29 199-233 43-71 (355)
95 PF03652 UPF0081: Uncharacteri 47.8 52 0.0011 28.9 5.9 75 78-164 28-107 (135)
96 PRK08652 acetylornithine deace 47.2 69 0.0015 31.8 7.5 76 334-424 270-345 (347)
97 PRK00109 Holliday junction res 45.0 1.8E+02 0.0039 25.6 8.9 66 89-166 43-111 (138)
98 COG2195 PepD Di- and tripeptid 41.5 32 0.00069 36.2 4.1 51 239-293 141-191 (414)
99 PRK09864 putative peptidase; P 32.3 39 0.00084 34.8 3.0 27 199-233 41-67 (356)
100 TIGR00250 RNAse_H_YqgF RNAse H 28.6 2E+02 0.0044 25.0 6.5 66 89-166 37-105 (130)
101 cd02126 PA_EDEM3_like PA_EDEM3 27.0 1.4E+02 0.0031 25.6 5.3 77 75-169 39-119 (126)
102 PRK08554 peptidase; Reviewed 26.7 1.9E+02 0.0041 30.3 7.1 75 333-423 362-436 (438)
103 PRK07338 hypothetical protein; 24.9 2.1E+02 0.0045 29.2 7.0 75 333-423 322-397 (402)
104 PF08333 DUF1725: Protein of u 23.3 67 0.0014 19.1 1.6 15 131-145 4-18 (20)
105 PRK11205 tbpA thiamine transpo 20.6 65 0.0014 32.0 2.1 26 18-43 5-30 (330)
106 cd02130 PA_ScAPY_like PA_ScAPY 20.1 5.2E+02 0.011 21.7 7.4 72 74-168 42-114 (122)
No 1
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-91 Score=689.24 Aligned_cols=398 Identities=45% Similarity=0.672 Sum_probs=368.3
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccceeEEEEEEeeecCCCCccccccccccccccccccCCCCcccceEEEEecCCCCH
Q 014338 10 DMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNI 89 (426)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~vyrm~qyd~~g~~~G~r~~~~~~ea~~~~~~~~~~~~R~~vv~~~~~~~~ 89 (426)
+.|+.|+.++++++++++|+..+++++||+||||+|||++|+|||||.+.+|+||+++.+ ..+|+|+++||.|+..
T Consensus 13 ~~~~~m~~~la~~l~~~~~~~~~daate~~vyrl~qydisg~pyg~rn~~ln~~A~sl~~----~~s~r~~v~r~ld~l~ 88 (555)
T KOG2526|consen 13 ALLFYMTLMLAICLVNGSQQVGEDAATEFHVYRLHQYDISGNPYGCRNYRLNYEAVSLGA----RTSRRTMVTRWLDLLT 88 (555)
T ss_pred hHHHHHHHHHHHHHhhchhhhhhhhcccceeeeeeeeeecCccccccccccchHHHHHHH----hhhhheehhhhhhhhH
Confidence 368999999999999999999999999999999999999999999999999999999965 4589999999999986
Q ss_pred HHHHHHHhccCCceEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhccCCCCcEEEeeChhHHHHHHHHhc--
Q 014338 90 SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVK-- 167 (426)
Q Consensus 90 ~~~~~~~~~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~~Pvyf~~~~~~~~~i~~~~~-- 167 (426)
....+ ..+|++|||||+||+++..++++ .++.|+.||+.|+..++++||||+++|+++..|+.+++
T Consensus 89 ~q~~d--~~~qs~G~vlI~LP~nl~~lnd~----------~r~l~~~LE~~ll~~~tavpVYfApenedl~sil~d~~~~ 156 (555)
T KOG2526|consen 89 TQVDD--MWAQSTGAVLIFLPDNLDELNDI----------DRKLFIDLEAKLLSAKTAVPVYFAPENEDLVSILHDVNTR 156 (555)
T ss_pred HHHHH--HHHhccCcEEEEechhhhhCCHH----------HHHHHHHHHHHHhcCCCCcceEecccchHHHHHHHhhccc
Confidence 55544 45678999999999999999988 78899999999999999999999999999999999964
Q ss_pred cCCCCCC----CCccccCCeEEEeccCCCcccCCCCcceEEEEEc-CcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCC
Q 014338 168 KNDATGQ----PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQ-GLKADGDANQLPTIAIVASYDTFGAAPALSVGSD 242 (426)
Q Consensus 168 ~~~~~~~----~~t~~~~~~~~~~s~~~~~~~~~~~~~NV~g~l~-G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAd 242 (426)
+++++|+ ..|+++|+|++++++.+++...++++.||+|+|. |...++|..+.|+|+|+||||++|.+|++++|||
T Consensus 157 ~~dapg~~~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgAD 236 (555)
T KOG2526|consen 157 SEDAPGALQHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGAD 236 (555)
T ss_pred cccCcchHHHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCC
Confidence 3444453 3478999999999999999999999999999998 8776777778999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCCCceeEE
Q 014338 243 SNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIH 322 (426)
Q Consensus 243 dn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~h 322 (426)
+||||+++|||+||+|+++|.+++++++||++|++++|+.+||+|+++|++--+....+||.++||||+||++.+.+|||
T Consensus 237 SNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mH 316 (555)
T KOG2526|consen 237 SNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMH 316 (555)
T ss_pred CCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEE
Confidence 99999999999999999999989999999999999999999999999999965555668999999999999988899999
Q ss_pred ecCCC-cchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhcCCCeEEEEeecCCCCCccccCCCCC-CC
Q 014338 323 VSKPP-ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLL-DS 400 (426)
Q Consensus 323 vs~~p-~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~gIPa~tls~~~~~~~~~~~~~s~~-Dt 400 (426)
+|||| .++.+.+|++.|+.+|+++++.+.++|||||++++.++||||+|+++++|++|+|++++|+++. +++++ |+
T Consensus 317 vsKpP~dnt~i~qffr~l~svAek~~~~v~~khkkInla~s~lAWEHErFsikR~pAfTLS~l~Sprdp~--rnsi~~d~ 394 (555)
T KOG2526|consen 317 VSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTKHKKINLASSRLAWEHERFSIKRMPAFTLSTLPSPRDPA--RNSILLDL 394 (555)
T ss_pred ccCCCCcchHHHHHHHHhhhhchhcceEEEEEeeeEeeccchhhhhhhhhhhhcccceeeccCCCCcchh--hccccccc
Confidence 99999 5788999999999999999999999999999999999999999999999999999999999995 45888 99
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhc
Q 014338 401 RHFVDETSFIRSVKLVAESLAVSLI 425 (426)
Q Consensus 401 ~d~ld~~~L~~~~~~iae~la~~~~ 425 (426)
++.+|.+.|.+++|+|||+||++|.
T Consensus 395 rsrldedtLi~ntRlIaEAla~~iy 419 (555)
T KOG2526|consen 395 RSRLDEDTLIDNTRLIAEALAGYIY 419 (555)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999974
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=2.1e-29 Score=230.67 Aligned_cols=176 Identities=25% Similarity=0.295 Sum_probs=120.7
Q ss_pred CEEEEEecCCCCCC-C-CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccH
Q 014338 220 PTIAIVASYDTFGA-A-PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ 297 (426)
Q Consensus 220 ~~Ivi~AHyDs~g~-~-p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~ 297 (426)
++|||+|||||++. . +...+||+|||||+++|||+||.|++.. ..|+++|+|++|+|||.|+.||++|+++ ..
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~----~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~ 75 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELK----PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DH 75 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHST----HSSSEEEEEEEESSGGGTSHHHHHHHHH-HH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhh----cccCccEEEEEecccccCccchHHHHHh-hh
Confidence 48999999999872 1 1359999999999999999999999954 3568999999999999999999999984 33
Q ss_pred hhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHH-HHHHhCceeccccccccCCCCCCCcchhhhhcCCC
Q 014338 298 RLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTN-VAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRV 376 (426)
Q Consensus 298 ~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~-~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~gI 376 (426)
...+++.++||+||+|.++..++....+ .....+.+....+.. .....+..... .......+||.+|...||
T Consensus 76 ~~~~~~~~~inlD~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sD~~~F~~~gi 148 (179)
T PF04389_consen 76 EELDNIAAVINLDMIGSGDPTVYSEGSP-SLPSRLEAYLSSFKQPYGSSLGPDVPP------EKPTFGGSDHYPFSKAGI 148 (179)
T ss_dssp CHHHHEEEEEEECSSBSSSSEEEEEEGG-GHHHHHHHHHHHHHHHHHCHTSSECEE------EESSTTSSTCHHHHTTT-
T ss_pred cccccceeEEeccccccCcccceeeeec-cccchhhhhhhhhhhhhhccccccccc------ccCCCCCCCcHhhhcCCE
Confidence 4578999999999999974444433332 211112333332211 11222222211 112244689999999999
Q ss_pred eEEEEeecCCCCCccccCCCCCCCcCCCCHHHHH
Q 014338 377 TAATLSELSAAPELLESTGGLLDSRHFVDETSFI 410 (426)
Q Consensus 377 Pa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~ 410 (426)
|+++++... .....+||..||+++||.+.|+
T Consensus 149 p~~~~~~~~---~~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 149 PAVTLSSTD---GYNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp EEEEEEESS---SSGTTTTSTT-SGGGC-HHHH-
T ss_pred eEEEEEecC---CCCCCCCCcccChhhcCCccCC
Confidence 999999876 1122568999999999998874
No 3
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.96 E-value=3.2e-28 Score=233.13 Aligned_cols=202 Identities=27% Similarity=0.360 Sum_probs=160.8
Q ss_pred CEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccH--
Q 014338 220 PTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ-- 297 (426)
Q Consensus 220 ~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~-- 297 (426)
|+|+++|++|+++.++++++||++++||+++||++|++|+++.. .....+++|+|++|+||.+||+||++|+.++..
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~-~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~ 79 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLP-DSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGN 79 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhh-ccccccCcEEEEEecCccccccchHHHHHHHHcCc
Confidence 68999999999999999999999999999999999999999953 235679999999999999999999999998652
Q ss_pred ----------hhhcCeeEEEEeccccCCCC-ceeEEecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCc
Q 014338 298 ----------RLRESIDYAICLNSVGSWNN-ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAW 366 (426)
Q Consensus 298 ----------~~~~~i~~vinlD~iG~~~~-~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~ 366 (426)
...++|+++||++++|...+ .+|+|+..+...+...++.+.+.++.+..+.......+..+...+.+|+
T Consensus 80 f~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPs 159 (234)
T PF05450_consen 80 FPSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPS 159 (234)
T ss_pred CcccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcc
Confidence 22479999999999999843 6999998554444445666666665555443333333233444568899
Q ss_pred chhhhhcC--CCeEEEEeecCCCCCcccc-CCCCCCCcCCCCHH---------------HHHHHHHHHHHHHHHHh
Q 014338 367 EHEQFSRL--RVTAATLSELSAAPELLES-TGGLLDSRHFVDET---------------SFIRSVKLVAESLAVSL 424 (426)
Q Consensus 367 dHe~F~~~--gIPa~tls~~~~~~~~~~~-~~s~~Dt~d~ld~~---------------~L~~~~~~iae~la~~~ 424 (426)
..++|.++ +||++.|++++.. |.++ |||+.|+.++||+. .+++.++.+|..|||.|
T Consensus 160 S~~sFLr~~~~i~~vVLtd~~~~--f~N~~y~S~~D~~~ni~~~y~~~~~~~~~~~~~~~~~~~~~~va~~va~~l 233 (234)
T PF05450_consen 160 SLQSFLRKDPNIPGVVLTDHDSQ--FTNKYYNSILDDAENINFSYPNNSTPEEDLNFVTSTQMSLANVATLVARAL 233 (234)
T ss_pred hHHHHHccCCCCCEEEecCCCcc--cccCCccCcccChhhhcCccCccCChhHhhccccHHHHHHHHHHHHHHHhh
Confidence 99999995 5999999998663 4333 79999999998872 56688888999999875
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.93 E-value=8.1e-25 Score=219.37 Aligned_cols=171 Identities=17% Similarity=0.207 Sum_probs=131.1
Q ss_pred CCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCC
Q 014338 198 PTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (426)
Q Consensus 198 ~~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~ 267 (426)
....||+|+++|.. ++.|||+|||||++... ...+||+||+||+++|||+||.|.+.
T Consensus 95 ~~g~nVIa~~~G~~-------~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~------ 161 (346)
T PRK10199 95 VTGSTVIAAHEGKA-------PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV------ 161 (346)
T ss_pred CccceEEEEECCCC-------CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC------
Confidence 35789999999843 57899999999986311 14589999999999999999999754
Q ss_pred CCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHH-HHHHHHHHHHHh
Q 014338 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQ-IFEGFTNVAEEL 346 (426)
Q Consensus 268 ~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~-~~~~l~~~a~~~ 346 (426)
+++++|.|+++++||.|+.||++|++++....++++.++||+||++.+ +.++++.+..... .+.+ ..+.+.++++++
T Consensus 162 ~~~~~I~fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~-~~~~~~~d~~~~~a~~~ 239 (346)
T PRK10199 162 PTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPE-AVRKLTRDRALAIARRH 239 (346)
T ss_pred CCCCcEEEEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHH-HHhHHHHHHHHHHHHHc
Confidence 257899999999999999999999998665457899999999999985 7888886543211 1222 335567778888
Q ss_pred CceeccccccccC--CCCCCCcchhhhhcCCCeEEEEee
Q 014338 347 GFKVGLKHKKINI--SNPRVAWEHEQFSRLRVTAATLSE 383 (426)
Q Consensus 347 ~~~~~~~~~ki~~--~~~~~~~dHe~F~~~gIPa~tls~ 383 (426)
|+.+...+..... ......+||.+|.++|||++++..
T Consensus 240 g~~~~~~~~~~~~~p~g~~~rSDH~~F~~~GIP~l~~~a 278 (346)
T PRK10199 240 GIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIPVLSVEA 278 (346)
T ss_pred CCccccCCCccccccCCCcCCcccHHHHhcCCCeEEeec
Confidence 8887665433210 112235899999999999999954
No 5
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=225.66 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=159.5
Q ss_pred CCcEEEeeChhHHHHHHHHhccCCCC-CCCC-c-cccCCeEEEecc-CCCcccCCCCcceEEEEEcCcCCCCCCCCCCEE
Q 014338 147 PYPVYFAFENDEIDAVLDDVKKNDAT-GQPA-T-ATTGGYKLVIPI-AEPKKVASPTITNIQGWLQGLKADGDANQLPTI 222 (426)
Q Consensus 147 ~~Pvyf~~~~~~~~~i~~~~~~~~~~-~~~~-t-~~~~~~~~~~s~-~~~~~~~~~~~~NV~g~l~G~~~~~~~~~~~~I 222 (426)
.||.-.+.. +.++.|...+.+...+ +... + ....|....... .........++.||+|.|+|+. +++.+|
T Consensus 282 ~Ip~~Pis~-~~ae~l~~~~~g~~~~~~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~-----epD~~V 355 (702)
T KOG2195|consen 282 KIPSLPISA-EDAEILLRLLGGGVKPDGLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSE-----EPDRYV 355 (702)
T ss_pred CCCCcCccc-hhHHHHHHHhCCCcccccccCccccccccccccccceeccceeeeeeeeeEEEEEecCc-----CCCeEE
Confidence 577777777 5788888777754322 1110 0 111222111100 0003466678999999999976 369999
Q ss_pred EEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcC
Q 014338 223 AIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRES 302 (426)
Q Consensus 223 vi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~ 302 (426)
||+||.||| .+||.|++||++.|+|++|.|+++++. +|+|+|+|+|++|+|||+|++||..|+|.+...+..+
T Consensus 356 iigahrDSw------~~Ga~dp~sGta~Ll~i~~~~~~~~k~-gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~ 428 (702)
T KOG2195|consen 356 IIGAHRDSW------TFGAIDPNSGTALLLEIARALSKLKKR-GWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSR 428 (702)
T ss_pred EEecccccc------ccCCcCCCccHHHHHHHHHHHHHHHHc-CCCccceEEEEEccchhccccccHHHHHHHHHHhhhe
Confidence 999999999 689999999999999999999999874 6999999999999999999999999999988777889
Q ss_pred eeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhc-CCCeEEEE
Q 014338 303 IDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSR-LRVTAATL 381 (426)
Q Consensus 303 i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~-~gIPa~tl 381 (426)
+..+||+|+++.++.. +|+...|. +..+++ ++++...-........ ....+...+|+.+|.. .|||++.+
T Consensus 429 av~yin~d~~~~~~~~--l~~~~~Pl---L~~li~---~~~k~~~~p~~~~~~~-~v~~~g~~Sd~~~F~~~~GIpsv~~ 499 (702)
T KOG2195|consen 429 AVVYINVDNAVLGDYT--LHVKTTPL---LTDLIE---EAAKSVLSPDKGDQSN-RVLSLGGGSDYASFLQFAGIPSVDF 499 (702)
T ss_pred eEEEEeccccccCCce--eEEecCcc---HHHHHH---HHHhccCCCCccccce-eEeccCCCCcchhhccccCcceeee
Confidence 9999999999986434 45554442 333443 2233321111111100 1111233579999988 89999988
Q ss_pred eecCCCCCccccCCCCCCCc
Q 014338 382 SELSAAPELLESTGGLLDSR 401 (426)
Q Consensus 382 s~~~~~~~~~~~~~s~~Dt~ 401 (426)
...... + .+||.+||.
T Consensus 500 ~f~~~y--P--~yhs~~dt~ 515 (702)
T KOG2195|consen 500 AFNRTY--P--FYHSTYDTY 515 (702)
T ss_pred eecCCc--c--eeecccCcH
Confidence 765432 2 467999994
No 6
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.8e-18 Score=176.63 Aligned_cols=271 Identities=16% Similarity=0.217 Sum_probs=193.3
Q ss_pred HHHHHHHHHHhhccCCCCc-EEEeeChhHHHHHHHHhccCCCC--CCCC------------------cc---c-----cC
Q 014338 131 KNVLLELEKLLVHAKLPYP-VYFAFENDEIDAVLDDVKKNDAT--GQPA------------------TA---T-----TG 181 (426)
Q Consensus 131 ~~~~~~le~~Ll~~~~~~P-vyf~~~~~~~~~i~~~~~~~~~~--~~~~------------------t~---~-----~~ 181 (426)
+.+|..+.+.++..++..| +.|+....+.+.|-++......+ |... |. . ..
T Consensus 59 ~~~~~a~~n~~~~k~~~~~~i~~~~~sn~teiikq~~~~hn~p~sg~~stf~~c~ms~~a~nhn~~~se~c~rrg~~~~~ 138 (596)
T KOG2657|consen 59 INSRGAITNDGLMKIDWRIQIVFIDNSNDTEIIKQCYSMHNKPKSGGSSTFPYCGMSFRAANHNAGNSEICYRRGKNDAK 138 (596)
T ss_pred ccccccccccchhcccCcceEEEeecccHHHHHHHHHHHhCCCCCCCCCCCchhhhhchhhhcCccccHHHHhcCCcchh
Confidence 4477788888888888888 88886655555554444332111 1100 00 1 11
Q ss_pred CeEEEeccCCCcccCCCC-cceEEEEEcCcCCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 014338 182 GYKLVIPIAEPKKVASPT-ITNIQGWLQGLKADG-DANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFS 259 (426)
Q Consensus 182 ~~~~~~s~~~~~~~~~~~-~~NV~g~l~G~~~~~-~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~ 259 (426)
-+|+. ....+...|.+. .+||+..+++..... .+...+++|.+|.+|+++.|+..++||++--++++++|..||+++
T Consensus 139 ~iq~~-ds~~~~~~C~pl~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~ 217 (596)
T KOG2657|consen 139 LIQMI-DSGDAPQLCGPLHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALK 217 (596)
T ss_pred hhhhh-ccCCcchhccccCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhc
Confidence 33543 344566788887 899999997754221 122378999999999999999999999999999999999999998
Q ss_pred hccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhcc----HhhhcC---eeEEEEeccccCC-CCceeEEecCCCcchH
Q 014338 260 LLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFD----QRLRES---IDYAICLNSVGSW-NNELWIHVSKPPENAY 331 (426)
Q Consensus 260 ~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~----~~~~~~---i~~vinlD~iG~~-~~~l~~hvs~~p~~~~ 331 (426)
+.+. -...++||+|+++.||.++|+||.+++.+++ +...++ |++++.+.++|.. +.++|+|+......+.
T Consensus 218 r~pa--i~nl~rnV~f~~f~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv 295 (596)
T KOG2657|consen 218 RQPA--INNLNRNVFFAFFNGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSV 295 (596)
T ss_pred cCcc--cccccceeEEEEeecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhH
Confidence 8763 3567899999999999999999999999874 223456 9999999999986 3678999864332233
Q ss_pred HHHHHHHHHHHHHHh-CceeccccccccCCCCCCCcchhhhhc--CCCeEEEEeecCCCCCcccc-CCCCCCCcCCCCHH
Q 014338 332 IKQIFEGFTNVAEEL-GFKVGLKHKKINISNPRVAWEHEQFSR--LRVTAATLSELSAAPELLES-TGGLLDSRHFVDET 407 (426)
Q Consensus 332 ~~~~~~~l~~~a~~~-~~~~~~~~~ki~~~~~~~~~dHe~F~~--~gIPa~tls~~~~~~~~~~~-~~s~~Dt~d~ld~~ 407 (426)
-.+..+.|+.+.+.. +..+.+- +.-+.+++.+|+.-++|.+ +++-++.|.+++. +|.++ ||||+|+.|+||..
T Consensus 296 ~nqtld~L~~~ekSlrs~~f~ll-~~s~~s~~lPPsSlqsFlR~dpn~saVvLad~~~--~f~NKyYhSilDdaeNin~s 372 (596)
T KOG2657|consen 296 KNQTLDVLDRIEKSLRSHAFDLL-KPSGSSDRLPPSSLQSFLRADPNVSAVVLADYGK--EFENKYYHSILDDAENINDS 372 (596)
T ss_pred HHHHHHHHHHHHhcccccCeeee-cCCCCCCCCChHHHHHHHhhCCCcceEEeccCCc--hhhhhhhhhhhcchhhccch
Confidence 346667676665543 2333322 1234456678899999998 5899999998753 34334 79999999999976
No 7
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.80 E-value=5.3e-19 Score=183.56 Aligned_cols=195 Identities=19% Similarity=0.161 Sum_probs=126.4
Q ss_pred CCcceEEEEEcCcCCCC-----CCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcce
Q 014338 198 PTITNIQGWLQGLKADG-----DANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (426)
Q Consensus 198 ~~~~NV~g~l~G~~~~~-----~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~ 272 (426)
....|+++.++|..... ....++.+++++|+|+... .+||+|||||+++|||+||.|.... |+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~----~~GA~DNasGva~llEiAr~l~~~~------p~~~ 251 (435)
T COG2234 182 LTSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPT----GPGADDNASGVAALLELARVLKGNP------PKRT 251 (435)
T ss_pred eEEEEEeeeeecccccceEEEeccCCCceeeecccccCCcC----CCCcccccHHHHHHHHHHHHHhcCC------CCce
Confidence 45777888777762100 0113567777777777543 7999999999999999999999863 7999
Q ss_pred EEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHhCceecc
Q 014338 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGL 352 (426)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~ 352 (426)
|.|++|++||.|+.||++|+.++.....+++..|||+||+|..+..-++.....+... +...+...+...+..+..
T Consensus 252 v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 327 (435)
T COG2234 252 VRFVAFGAEESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLER----VPPGLRAVAALIGRPVDP 327 (435)
T ss_pred EEEEEecchhhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCcc----ccchHHHHHHHHHhhccc
Confidence 9999999999999999999999875556788889999999996312222222211110 111111112211111111
Q ss_pred ccccccCCCCCCCcchhhhhcCCCeEEEEeecCCCCC-ccccCCCCCCCcCCCCHHHHHHH
Q 014338 353 KHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPE-LLESTGGLLDSRHFVDETSFIRS 412 (426)
Q Consensus 353 ~~~ki~~~~~~~~~dHe~F~~~gIPa~tls~~~~~~~-~~~~~~s~~Dt~d~ld~~~L~~~ 412 (426)
........+|||.+|.++|+|++.++....... .....|+..|+ ++ +...+...
T Consensus 328 ----~~~~~~~~~sd~~~f~~~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~ 382 (435)
T COG2234 328 ----STVQDFDPRSDHYPFTEAGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQH 382 (435)
T ss_pred ----cccCCCCCCCcchhhhhcCCcceeeeecCCccccccccccccccc-cc-chhhhccc
Confidence 011233557999999999999998876543321 11124688887 66 55444433
No 8
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.62 E-value=7.5e-15 Score=159.28 Aligned_cols=190 Identities=17% Similarity=0.241 Sum_probs=133.3
Q ss_pred cccCCCCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcce
Q 014338 193 KKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (426)
Q Consensus 193 ~~~~~~~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~ 272 (426)
..++-..+.||+.+|.++... ....|++.|||||++. +|||+|+|+|+|+|||++|++++.+. ..+++
T Consensus 121 ~~~~Y~~i~NIvVki~~k~~~----~~~~lLlnaHfDSvpt----~~gAtDDg~~va~mLe~lRv~s~~~~----~l~~~ 188 (834)
T KOG2194|consen 121 MTLVYQNISNIVVKISPKNGN----DKNALLLNAHFDSVPT----GPGATDDGSGVASMLEALRVLSKSDK----LLTHS 188 (834)
T ss_pred hhheeeeeeeEEEecCCCCCC----ccceeeeeccccccCC----CCCCCcchhHHHHHHHHHHHhhcCCC----ccccc
Confidence 446667799999999987732 2359999999999988 99999999999999999999999863 34899
Q ss_pred EEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHh-Cceec
Q 014338 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEEL-GFKVG 351 (426)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~-~~~~~ 351 (426)
|+|+++++||.+++||..|+.+++ +..+++++||||..|.++..+-++ ++|. + .+.+...+.+++. +-.+.
T Consensus 189 vVFLfNgaEE~~L~gsH~FItQH~--w~~~~ka~INLea~GsGGreiLFQ-agp~-~----wl~k~Y~~~~phPf~stlg 260 (834)
T KOG2194|consen 189 VVFLFNGAEESGLLGSHAFITQHP--WSKNIKAVINLEAAGSGGREILFQ-AGPN-H----WLLKAYLQAAPHPFASTLG 260 (834)
T ss_pred EEEEecCcccchhhhcccceecCh--hhhhhheEEeccccCcccceeEEe-cCCc-h----HHHHHHHhhCCCchhhhhH
Confidence 999999999999999999999875 468999999999999985554444 3332 1 1222221111110 00000
Q ss_pred --cccccccCCCCCCCcchhhhhc-CCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHH
Q 014338 352 --LKHKKINISNPRVAWEHEQFSR-LRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFI 410 (426)
Q Consensus 352 --~~~~ki~~~~~~~~~dHe~F~~-~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~ 410 (426)
+-...+-.+ ..|...|.. .++|++.+...... + -|||..|..+.+-...+.
T Consensus 261 ee~Fq~g~IpS----dTDfrif~eyg~l~GLD~A~~~Ng--~--vYHTk~D~~~~i~~gs~q 314 (834)
T KOG2194|consen 261 EELFQSGIIPS----DTDFRIFREYGHLPGLDMAFVKNG--Y--VYHTKYDGIQYIPPGSLQ 314 (834)
T ss_pred HHhhhcCcCcc----ccchHHHHHhCCcccceeeeeecc--c--eEEeecccccccCcchhh
Confidence 000011111 247888866 47999988766432 2 257889988877665443
No 9
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.1e-12 Score=122.23 Aligned_cols=205 Identities=14% Similarity=0.153 Sum_probs=142.4
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEe
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~ 278 (426)
...|+++++.... ..+.|+.+|||+.-.-++..-||.|.+.-+++||++||.+.+.-..+..++.-++..+||
T Consensus 104 ~f~nii~tl~~~A-------~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFF 176 (338)
T KOG3946|consen 104 NFNNLIATLDPNA-------SRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFF 176 (338)
T ss_pred eeeeEEEecCCCc-------chheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEe
Confidence 3678999987643 689999999999865444457999999999999999999977644234567889999999
Q ss_pred CCCCC--------CCcchHHHHHhccH----h-----hhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHH
Q 014338 279 SGGPY--------NYNGTHKWLRSFDQ----R-----LRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTN 341 (426)
Q Consensus 279 ~gEe~--------g~~GS~~~v~~~~~----~-----~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~ 341 (426)
+|||. ..+||++..+.+.. . .++.|+..+-+|-+|..+-.++-+... ...+|..+..
T Consensus 177 DGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~------t~~wF~Rl~~ 250 (338)
T KOG3946|consen 177 DGEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN------TDRWFHRLQS 250 (338)
T ss_pred ccHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc------hHHHHHHHHH
Confidence 99883 67899999987431 1 356777788888888763333333221 1123322222
Q ss_pred HH---------HHhCceeccccccccCCCC--CCCcchhhhhcCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHH
Q 014338 342 VA---------EELGFKVGLKHKKINISNP--RVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFI 410 (426)
Q Consensus 342 ~a---------~~~~~~~~~~~~ki~~~~~--~~~~dHe~F~~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~ 410 (426)
+- +++-... .+.....+ ...=||-+|.++|+|++.+...+.+ . -+|+..|+-.++|+....
T Consensus 251 iE~~l~~~g~l~s~r~~~----~~Fq~~~~~~~veDDHiPFlrrgVPVLHlI~~pFP-s---vWHt~dD~e~nldy~tt~ 322 (338)
T KOG3946|consen 251 IEGELALLGLLASHRLPP----RYFQPGGLSSVVEDDHIPFLRRGVPVLHLIPVPFP-S---VWHTPDDNERNLDYATTD 322 (338)
T ss_pred HHHHHHHHHHHHhccCCc----hhccccCccccccCCcchhhhcCCceEEecCCCCc-c---cccCccchhhcCCchhHH
Confidence 11 1111111 11111111 1234899999999999999887653 2 246999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 014338 411 RSVKLVAESLAVSL 424 (426)
Q Consensus 411 ~~~~~iae~la~~~ 424 (426)
..+.++..-++.|+
T Consensus 323 ~~~lilr~Fv~eyL 336 (338)
T KOG3946|consen 323 NLALIIRVFVAEYL 336 (338)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888775
No 10
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.38 E-value=4.6e-11 Score=118.46 Aligned_cols=263 Identities=17% Similarity=0.142 Sum_probs=161.7
Q ss_pred ccccccccccccccccCCCCcccceEEEEecCCCCHHHHHHH-H-hccCCceEEEEecCccccccCCCCCCCchhhHHHH
Q 014338 54 GSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEY-V-SRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVK 131 (426)
Q Consensus 54 G~r~~~~~~ea~~~~~~~~~~~~R~~vv~~~~~~~~~~~~~~-~-~~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~ 131 (426)
|+=+.+-+-|+|-+.- .++.-+|-+|-.+.+++. .++.+ + ..++++-|||+-.-..-......
T Consensus 69 ~PYsls~~IEgr~v~~-~gD~~Gr~~Va~~pq~vd--d~k~~~i~Aae~ga~a~~f~~~~~rriV~~G------------ 133 (486)
T COG4882 69 GPYSLSGDIEGRPVVL-EGDAGGRVVVARAPQVVD--DLKAAAILAAEAGAEALLFESRDPRRIVTGG------------ 133 (486)
T ss_pred cccccccccccceecc-cCCCCCeEEeeeccccHH--HHHHHHHHHHHcCCeEEEEecCCceeEEecc------------
Confidence 3334445556775542 233445555555566553 23222 2 24567888888643332222221
Q ss_pred HHHHHHHHHhhccCCCCcEEEeeChhHHHHHHHHhccCCCCCCCCccccCCeEEEeccCCCcccCCCCcceEEEEEcCcC
Q 014338 132 NVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLK 211 (426)
Q Consensus 132 ~~~~~le~~Ll~~~~~~Pvyf~~~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~~~s~~~~~~~~~~~~~NV~g~l~G~~ 211 (426)
+++..+...-++|||+..+++ .-..+ + .+....+.++.. + ....++|+++.=.|.
T Consensus 134 ----d~gy~~~s~PtPIPva~v~en-~~~y~----~-----------~~~rvrl~vD~~-~---~~ty~y~~Ia~~~~e- 188 (486)
T COG4882 134 ----DWGYSVSSSPTPIPVAVVPEN-YSRYA----E-----------EAGRVRLWVDAC-V---ERTYDYNVIAVDGGE- 188 (486)
T ss_pred ----cccccCCCCCCCcceEEeccC-cchhh----c-----------cceeEEEEEecc-c---ceeEEEEEEEecCCC-
Confidence 224456666799999999875 21111 0 011222333111 1 111477888765442
Q ss_pred CCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCC------
Q 014338 212 ADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNY------ 285 (426)
Q Consensus 212 ~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~------ 285 (426)
+.+|+|+||.||| ..|+.||--|++...++++.|..-. +-+-.+.|++||.|.
T Consensus 189 -------n~vv~i~AH~DHW------~~G~tDN~lg~~~AV~~~~~lr~~~--------~~~~lv~FtAEE~g~p~~~sf 247 (486)
T COG4882 189 -------NGVVLIGAHLDHW------YTGFTDNILGVAQAVETAGRLRGRG--------LAAGLVVFTAEEHGMPGMASF 247 (486)
T ss_pred -------CCceEEeechhhh------hhcccchhhhHHHHHHHHHHHhhcC--------cceeEEEEeccccCCCCCcce
Confidence 5799999999999 6799999999999999999987542 334577888999654
Q ss_pred ---cchHHHHHhccHhhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCC
Q 014338 286 ---NGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNP 362 (426)
Q Consensus 286 ---~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~ 362 (426)
.||+.|+++... -++|.+.+|+|.+|.. .+-+ +..| ++.+. ++++|... ..++
T Consensus 248 yWa~GSr~~lk~~k~--~~~v~~~VN~Dv~g~~--~lv~--~~~P------~L~e~----~~~~g~~~--------vesp 303 (486)
T COG4882 248 YWAAGSRGLLKESKA--AEEVEAYVNFDVAGYR--CLVA--SGAP------QLVEH----ALEAGAVE--------VESP 303 (486)
T ss_pred eecccchHHHhhcCC--chhhhheecccccccc--chhh--hcCh------HHHHH----HHHhCCce--------ecCC
Confidence 589999988653 5789999999999984 4333 2222 33332 33333211 1123
Q ss_pred CCCcchhhhhcCCCeEEEEeecCCCCCccccCCCCCCCcC
Q 014338 363 RVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRH 402 (426)
Q Consensus 363 ~~~~dHe~F~~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d 402 (426)
-+++|-..+.+.|||++|++++-.+ +....+|++.||+.
T Consensus 304 e~y~Ds~~y~~aGiPS~Ti~SL~~~-~~~e~yh~p~Dtpa 342 (486)
T COG4882 304 EPYCDSIMYAWAGIPSLTIHSLWCP-GVQEAYHTPRDTPA 342 (486)
T ss_pred CcccchhhhhhcCCCeeEeeeccCC-CccceecCCCCCch
Confidence 4567777889999999999998643 33334789999983
No 11
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.25 E-value=4.9e-10 Score=112.66 Aligned_cols=200 Identities=18% Similarity=0.200 Sum_probs=120.3
Q ss_pred CCeEEEeccCCCcccCCCCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 014338 181 GGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSL 260 (426)
Q Consensus 181 ~~~~~~~s~~~~~~~~~~~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~ 260 (426)
..|.++++ ....+-...--.-.++|.. ++.|++++|.+|-+ -|+||-||++++.+||+.|++
T Consensus 102 g~Y~V~Id----S~l~~G~L~ygE~~ipG~s-------~~EillsthiCHPs-------mANdnLSG~~v~~~La~~L~~ 163 (386)
T PF09940_consen 102 GEYEVVID----STLEDGSLTYGEFVIPGES-------DEEILLSTHICHPS-------MANDNLSGPAVLTFLAKWLKQ 163 (386)
T ss_dssp SEEEEEEE----EEEES-EEEEEEEEE--SS-------S-EEEEEEE----S--------TTTTHHHHHHHHHHHHHHTT
T ss_pred CceEEEEe----eeecCCceeEEEEEecCCC-------CCeEEEEEeccCcc-------cccccccHHHHHHHHHHHHhc
Confidence 45776663 2233334444445678854 78999999999974 489999999999999999998
Q ss_pred ccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHH
Q 014338 261 LYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFT 340 (426)
Q Consensus 261 l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~ 340 (426)
+. ++++..|+|.. +-+||-.|+.+......++|.+-++|.++|.. +. |-+.-..-.++.+.++.+
T Consensus 164 ~~------~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~-~~-~syk~Sr~g~~~iDr~~~--- 228 (386)
T PF09940_consen 164 LP------NRYTYRFLFVP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDD-GA-YSYKRSRRGNTLIDRAAA--- 228 (386)
T ss_dssp S--------SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SS-S--EEEE--TTSSSHHHHHHH---
T ss_pred CC------cCceEEEEEcc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCC-CC-cceecCCCCCcHHHHHHH---
Confidence 74 35999999998 89999999998766545559999999999974 33 222211112444444433
Q ss_pred HHHHHhCceeccccccccCCCCCCCcchhhhhcCC--CeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHH
Q 014338 341 NVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLR--VTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAE 418 (426)
Q Consensus 341 ~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~g--IPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae 418 (426)
.+.++.+-++.. ..+.+ ..+|+..|.-.| +|+..++..+. .+| ..|||..|+++.|+.+.|......+.+
T Consensus 229 ~vl~~~~~~~~~----~~F~~--~GsDERQfcSPG~dLPv~~~~Rs~y-g~y-pEYHTS~Dnl~fi~p~~L~~s~~~~~~ 300 (386)
T PF09940_consen 229 HVLKHSGPNFKI----YDFLP--RGSDERQFCSPGFDLPVGSLMRSKY-GEY-PEYHTSLDNLDFISPEGLEGSFEVLLE 300 (386)
T ss_dssp HHHHHSSS-EEE----E---S---SSTHHHHTSTTT---EEEEESS-T-T---TTTTBTTSSGGG--HHHHHHHHHHHHH
T ss_pred HHHHhcCCCceE----ecccc--cCCCcceeecCCcCCceeeeecccc-cCC-cccccCCCccccCCHHHHHHHHHHHHH
Confidence 223444333332 22222 368999999876 99999987654 233 257899999999999999998888877
Q ss_pred HHH
Q 014338 419 SLA 421 (426)
Q Consensus 419 ~la 421 (426)
++-
T Consensus 301 ~i~ 303 (386)
T PF09940_consen 301 AIE 303 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 12
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.58 E-value=1.7e-07 Score=97.20 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=69.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
-|++|+++|..+ ..|.|++++|+||++ ..|.-|+..|+++.||++|.|.+.. .+|+++|.+++|..
T Consensus 56 gN~~~~~~g~~~-----~~~~i~~gsHlDtv~-----~gG~~dg~~Gv~~~le~~~~l~~~~----~~~~~~i~vi~~~~ 121 (406)
T TIGR03176 56 GNLYGRLVGTEF-----PEETILTGSHIDTVV-----NGGNLDGQFGALAAWLAVDYLKEKY----GAPLRTVEVLSMAE 121 (406)
T ss_pred CcEEEEecCCCC-----CCCeEEEeccccCCC-----CCCccCchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEecc
Confidence 699999999763 479999999999997 3577899999999999999999763 46899999999999
Q ss_pred CCCC-----CcchHHHHH
Q 014338 281 GPYN-----YNGTHKWLR 293 (426)
Q Consensus 281 Ee~g-----~~GS~~~v~ 293 (426)
||-+ ++||+.|.-
T Consensus 122 EEg~rf~~~~~Gs~~~~g 139 (406)
T TIGR03176 122 EEGSRFPYVFWGSKNIFG 139 (406)
T ss_pred ccCccCCcccccHHHHhC
Confidence 9976 999999984
No 13
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.50 E-value=4.2e-07 Score=93.86 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=68.1
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.||+|+++|..+ +.|.|++++|+|+++. .|.-|+..|++++|++++.|.+.. .+|+++|.|++|..
T Consensus 54 ~nl~a~~~g~~~-----~~~~l~~~~H~DtV~~-----gg~~dg~~gvaa~l~a~~~l~~~g----~~~~~~i~~~~~~d 119 (401)
T TIGR01879 54 GNLIGRKEGTEP-----PLEVVLSGSHIDTVVN-----GGNFDGQLGVLAGIEVVDALKEAY----VVPLHPIEVVAFTE 119 (401)
T ss_pred CcEEEEecCCCC-----CCCEEEEecccccCCC-----CCccCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEeC
Confidence 599999998652 2589999999999974 467789999999999999998763 46789999999999
Q ss_pred CCC-----CCcchHHHHH
Q 014338 281 GPY-----NYNGTHKWLR 293 (426)
Q Consensus 281 Ee~-----g~~GS~~~v~ 293 (426)
||. ++.||+.|+.
T Consensus 120 EE~~~f~~~~~Gs~~~~~ 137 (401)
T TIGR01879 120 EEGSRFPYGMWGSRNMVG 137 (401)
T ss_pred CcCcCcccccccHHHHhc
Confidence 997 8899999975
No 14
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.45 E-value=1.2e-06 Score=90.71 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=75.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-------------CCCCCCCCchhHHHHHHHHHHHHHhccCCCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-------------ALSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-------------~~~~GAddn~SG~a~LLElar~~~~l~~~~~ 266 (426)
..|++++++|.. .|+|++.+|+|+.+... -+..|+.|+-+|++++|++++.|.+..
T Consensus 87 ~~~lia~~~g~~-------~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~---- 155 (410)
T PRK06133 87 GDMVVATFKGTG-------KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLG---- 155 (410)
T ss_pred CCeEEEEECCCC-------CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcC----
Confidence 469999997742 47899999999997521 135789999999999999999998753
Q ss_pred CCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEec
Q 014338 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 267 ~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
..++.+|.|++..+||.|..|++.++++.. .+..++|+++
T Consensus 156 ~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~----~~~d~~i~~e 195 (410)
T PRK06133 156 FKDYGTLTVLFNPDEETGSPGSRELIAELA----AQHDVVFSCE 195 (410)
T ss_pred CCCCCCEEEEEECCcccCCccHHHHHHHHh----ccCCEEEEeC
Confidence 345679999999999999899999998632 2345555554
No 15
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.41 E-value=7.8e-06 Score=74.49 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=110.6
Q ss_pred EEEecCCCCCC-----CC----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCc-
Q 014338 223 AIVASYDTFGA-----AP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYN- 286 (426)
Q Consensus 223 vi~AHyDs~g~-----~p----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~- 286 (426)
++.+|+|+.+. .+ -+..|++|+..|++++|.+++.|.+.. ..++++|.|+++..||.|..
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~g~~~ 76 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESG----DDLPGNIIFLFTPDEEIGSIG 76 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTT----TTCSSEEEEEEESTCCGTSTT
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhcc----ccccccccccccccccCCCcc
Confidence 57899999982 11 136799999999999999999998743 45789999999999999998
Q ss_pred chHHHHHhccHhhhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHhCc-eeccccccccCCCCCCC
Q 014338 287 GTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGF-KVGLKHKKINISNPRVA 365 (426)
Q Consensus 287 GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~-~~~~~~~ki~~~~~~~~ 365 (426)
|.++++++... ...++.+++..+.-+.. .. . ++.+ ..+++.+.+++++.+. ...... .. -.
T Consensus 77 g~~~l~~~~~~-~~~~~~~~~~~e~~~~~--~~---~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~-----g~ 138 (189)
T PF01546_consen 77 GAKHLLEEGAF-FGLHPDYVIIGEPTGKG--GV---G--SDND---PPLVQALQAAAQEVGGEPPEPVA--SG-----GG 138 (189)
T ss_dssp HHHHHHHHCEE-EEEEESEEEECECETTS--EE---E--HCTC---HHHHHHHHHHHHHTTSSEEEEEE--ES-----SS
T ss_pred hhhhhhhhccc-ccccccccccccccccc--cc---c--cccc---HHHHHHHHHHHHHHhhccccccc--ee-----cc
Confidence 99999997211 12335666665544432 11 1 2222 2366666666666543 322211 11 12
Q ss_pred cchhhhh---cCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 014338 366 WEHEQFS---RLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLA 421 (426)
Q Consensus 366 ~dHe~F~---~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae~la 421 (426)
.|--.|. ..++|.+.+..... ..|+.. |.++.+.+.+.++++++.|.
T Consensus 139 tD~~~~~~~~~~~~~~i~~G~~~~------~~H~~~---E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 139 TDAGFLAEVKGLGIPAIGFGPGGS------NAHTPD---EYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp STHHHHHCHHHTTEEEEEEESCEE------STTSTT----EEEHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccccceeeeCCCCC------CCCCCC---cEecHHHHHHHHHHHHHHHh
Confidence 4555566 35899998875431 224433 67899999999999988775
No 16
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.39 E-value=1.2e-06 Score=90.87 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=67.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.|++++++|... ..|.|++.+|+|+++. .|+.|+.+|++++|++++.|.+.. ..++++|.|+++..
T Consensus 61 ~nlia~~~g~~~-----~~~~l~~~~H~DtVp~-----~g~~D~~~g~aa~l~a~~~l~~~~----~~~~~~i~~~~~~d 126 (414)
T PRK12890 61 GNLFGRLPGRDP-----DLPPLMTGSHLDTVPN-----GGRYDGILGVLAGLEVVAALREAG----IRPPHPLEVIAFTN 126 (414)
T ss_pred CcEEEEeCCCCC-----CCCEEEEeCcccCCCC-----CCCcCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEec
Confidence 499999988531 3579999999999974 477899999999999999998754 35688999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 014338 281 GPY-----NYNGTHKWLRS 294 (426)
Q Consensus 281 Ee~-----g~~GS~~~v~~ 294 (426)
||. ++.||+++.+.
T Consensus 127 EE~~~~~~~~~G~~~~~~~ 145 (414)
T PRK12890 127 EEGVRFGPSMIGSRALAGT 145 (414)
T ss_pred ccccccCCccccHHHHHcc
Confidence 997 77999888764
No 17
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.38 E-value=1.1e-06 Score=95.53 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=67.0
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEe
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~ 278 (426)
...||+|+++|.++ ..|.|++++|+||+. ..|.-|+..|+++.||++|.|.+.. .+++++|.|++|
T Consensus 236 ~~GNl~~~~~g~~~-----~~~~v~~gsHlDTV~-----~gG~~DG~~Gv~a~lea~~~l~~~~----~~~~~~i~vv~~ 301 (591)
T PRK13590 236 AVGNVVGRYKGSTP-----QAKRLLTGSHYDTVR-----NGGKYDGRLGIFVPMACVRELHRQG----RRLPFGLEVVGF 301 (591)
T ss_pred CCCCEEEEecCCCC-----CCCeEEEecccccCC-----CCCCcccHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEe
Confidence 35899999999652 358899999999995 3566799999999999999999864 356789999999
Q ss_pred CCCCC-----CCcchHHH
Q 014338 279 SGGPY-----NYNGTHKW 291 (426)
Q Consensus 279 ~gEe~-----g~~GS~~~ 291 (426)
..||. ++.||+.|
T Consensus 302 ~~EEg~rF~~~~~GS~~~ 319 (591)
T PRK13590 302 AEEEGQRYKATFLGSGAL 319 (591)
T ss_pred cCCccccCCccccchHHH
Confidence 99997 59999974
No 18
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=95.37 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=69.8
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEe
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~ 278 (426)
...||+|+++|.++ ..|.|++++|+||+. ..|-=|+..|+++.||++|.|.... .+++++|.|+.|
T Consensus 236 ~~gNv~~~~~g~~~-----~~p~v~~gSHlDTV~-----~gG~~DG~~Gv~a~l~~~~~l~~~~----~~~~~~i~vi~~ 301 (591)
T PRK13799 236 AVGNVVGRYKAADD-----DAKTLITGSHYDTVR-----NGGKYDGREGIFLAIACVKELHEQG----ERLPFHFEVIAF 301 (591)
T ss_pred CCCCEEEEcCCCCC-----CCCeEEEeccccccC-----CCCccccHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEe
Confidence 35899999999752 378999999999996 3567799999999999999999864 467899999999
Q ss_pred CCCCC-----CCcchHHHH
Q 014338 279 SGGPY-----NYNGTHKWL 292 (426)
Q Consensus 279 ~gEe~-----g~~GS~~~v 292 (426)
..||. ++.||+.|+
T Consensus 302 ~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 302 AEEEGQRFKATFLGSGALI 320 (591)
T ss_pred cCCCccCCCccccchHHHh
Confidence 99996 899999998
No 19
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.32 E-value=2.2e-06 Score=87.51 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=76.8
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
.|+++.++|.. ..|+|++.+|+|+.+.. | -+..|+.|+.+|++++|++++.|.+..
T Consensus 52 ~~~~~~~~g~~------~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~- 124 (375)
T TIGR01910 52 GKVVVKEPGNG------NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAG- 124 (375)
T ss_pred cceEEeccCCC------CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcC-
Confidence 36777777743 25899999999999863 1 134689999999999999999998753
Q ss_pred CCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccc
Q 014338 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~i 312 (426)
..++++|.|+++.+||.|..|++.++++. ..++..++|+.|.-
T Consensus 125 ---~~~~~~i~~~~~~~EE~g~~G~~~~~~~~---~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 125 ---IKPNGNIILQSVVDEESGEAGTLYLLQRG---YFKDADGVLIPEPS 167 (375)
T ss_pred ---CCCCccEEEEEEcCcccCchhHHHHHHcC---CCCCCCEEEECCCC
Confidence 24578999999999999999999999863 12345677777754
No 20
>PRK09133 hypothetical protein; Provisional
Probab=98.28 E-value=4.1e-06 Score=88.41 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=76.8
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
..||+++++|.+ +.+.|++.+|+|+++.. | .+..|+.|+-+|++++|++++.|.+..
T Consensus 88 ~~nli~~~~g~~------~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~- 160 (472)
T PRK09133 88 KGNLVARLRGTD------PKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREG- 160 (472)
T ss_pred ceeEEEEecCCC------CCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcC-
Confidence 479999998864 24789999999999752 1 256799999999999999999997653
Q ss_pred CCCCCCcceEEEEEeCCCC-CCCcchHHHHHhccHhhhcCeeEEEE
Q 014338 264 NPKTRGRYNILFGLTSGGP-YNYNGTHKWLRSFDQRLRESIDYAIC 308 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe-~g~~GS~~~v~~~~~~~~~~i~~vin 308 (426)
..++++|.|+++..|| .|..|++.+++++.. .-+..++|+
T Consensus 161 ---~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~--~~~~~~~i~ 201 (472)
T PRK09133 161 ---FKPKRDIILALTGDEEGTPMNGVAWLAENHRD--LIDAEFALN 201 (472)
T ss_pred ---CCCCCCEEEEEECccccCccchHHHHHHHHhh--ccCeEEEEE
Confidence 3567899999999999 899999999987532 113456666
No 21
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.26 E-value=4.6e-06 Score=86.75 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=71.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
..||+++++|... ...|+|++.+|+|+.+..+ -+..|+.|+-+|++++|.+++.|.+..
T Consensus 62 ~~nvia~~~g~~~----~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~ 137 (421)
T PRK08596 62 DPNVVGVKKGTES----DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAG 137 (421)
T ss_pred CceEEEEecCCCC----CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcC
Confidence 3699999988541 1247899999999976521 245799999999999999999998763
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
..++.+|.|++..+||.|..|+++++++
T Consensus 138 ----~~~~~~v~~~~~~dEE~g~~G~~~~~~~ 165 (421)
T PRK08596 138 ----IELPGDLIFQSVIGEEVGEAGTLQCCER 165 (421)
T ss_pred ----CCCCCcEEEEEEeccccCCcCHHHHHhc
Confidence 3467899999999999998999999876
No 22
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.19 E-value=5.8e-06 Score=85.84 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=64.8
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.|++|+++|.+. ..|.|++++|+|+++. .|.-|.-+|++++|++++.|.+.. .+++++|.|+++..
T Consensus 63 gNl~a~~~g~~~-----~~~~l~~~~H~DtVp~-----gg~~D~k~Gv~a~l~a~~~l~~~~----~~~~~~i~v~~~~d 128 (414)
T PRK12891 63 GNLFARRAGRDP-----DAAPVMTGSHADSQPT-----GGRYDGIYGVLGGLEVVRALNDAG----IETERPVDVVIWTN 128 (414)
T ss_pred CCEEEEecCCCC-----CCCeEEEEecccCCCC-----CccccchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEecc
Confidence 499999988642 2589999999999964 355689999999999999998764 45788999999999
Q ss_pred CCCC-----CcchHHHH
Q 014338 281 GPYN-----YNGTHKWL 292 (426)
Q Consensus 281 Ee~g-----~~GS~~~v 292 (426)
||.+ +.||+.|.
T Consensus 129 EE~~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 129 EEGSRFAPSMVGSGVFF 145 (414)
T ss_pred cccCcCCcccccHHHHh
Confidence 9975 57998663
No 23
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.18 E-value=7.8e-06 Score=82.81 Aligned_cols=84 Identities=24% Similarity=0.232 Sum_probs=67.9
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------CCCCCC----CCchhHHHHHHHHHHHHHhccCCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGS----DSNGSGVVALLEVARLFSLLYSNP 265 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p----------~~~~GA----ddn~SG~a~LLElar~~~~l~~~~ 265 (426)
..|++++++|.. +.|+|++.+|+|+.+..+ -+..|+ .|+-+|++++|++++.|.+..
T Consensus 49 ~~~~~~~~~g~~------~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~--- 119 (361)
T TIGR01883 49 DNNLIARLPGTV------KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE--- 119 (361)
T ss_pred CceEEEEEeCCC------CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC---
Confidence 579999998764 258999999999998532 234566 677899999999999997742
Q ss_pred CCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 266 KTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 266 ~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
.++.+|.|+++.+||.|..|++.|++.
T Consensus 120 --~~~~~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 120 --TPHGTIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred --CCCCCEEEEEEcccccCchhHhHhChh
Confidence 246789999999999999999998753
No 24
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=98.17 E-value=9.1e-06 Score=83.24 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=75.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
..|+++.++|.. +.++|++.+|+|+.+..+ -+..|+.|+-.|++++|++++.|.+..
T Consensus 63 ~~nl~~~~~g~~------~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~ 136 (400)
T PRK13983 63 RPNIVAKIPGGD------GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLG 136 (400)
T ss_pred CccEEEEecCCC------CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhC
Confidence 489999998753 246999999999998631 135789999999999999999998753
Q ss_pred CCCCCCCcceEEEEEeCCCCCCC-cchHHHHHhccHhhhcCeeEEEEec
Q 014338 263 SNPKTRGRYNILFGLTSGGPYNY-NGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~-~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
.+++.+|.|+++.+||.|- .|.+++++++.. ......++++.|
T Consensus 137 ----~~~~~~v~~~~~~dEE~g~~~g~~~~~~~~~~-~~~~~d~~i~~~ 180 (400)
T PRK13983 137 ----IRPKYNLGLAFVSDEETGSKYGIQYLLKKHPE-LFKKDDLILVPD 180 (400)
T ss_pred ----CCCCCcEEEEEEeccccCCcccHHHHHhhccc-ccCCCCEEEEec
Confidence 3467899999999999877 489998876321 122344555543
No 25
>PRK13381 peptidase T; Provisional
Probab=98.17 E-value=1.1e-05 Score=83.26 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=67.9
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCC------------------------------------------C
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA------------------------------------------L 237 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~------------------------------------------~ 237 (426)
..||+|+++|..+ ..|+|++.+|+|+.+..+. +
T Consensus 54 ~~nvi~~~~g~~~-----~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (404)
T PRK13381 54 HAIVTAKLPGNTP-----GAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIF 128 (404)
T ss_pred CeEEEEEEecCCC-----CCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEe
Confidence 3599999988642 2489999999999976321 2
Q ss_pred CCCC----CCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 238 SVGS----DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 238 ~~GA----ddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
..|+ .|+-+|++++|.+++.|.+.. .++.+|.|++..+||.|..|++.++.+
T Consensus 129 GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-----~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 129 SDGTSVLGADNKAAIAVVMTLLENLTENE-----VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCCccccccccHHHHHHHHHHHHHHHhcC-----CCCCCEEEEEEcccccccccHHHHHHh
Confidence 2367 899999999999999997652 235689999999999999999999754
No 26
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.14 E-value=2.9e-05 Score=76.51 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=120.1
Q ss_pred CCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHh
Q 014338 219 LPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQR 298 (426)
Q Consensus 219 ~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~ 298 (426)
+..|++++|.-|-+. |+||-||+|.+.-||+.|+.++. +|+-.|++-. +-+||-.|+.....
T Consensus 178 ~~eiLlst~lCHPSm-------aNdn~SG~all~~lak~l~~~kt------rysYRfvf~P----~TiGsi~wLsrnee- 239 (435)
T COG4310 178 KDEILLSTYLCHPSM-------ANDNLSGLALLTFLAKALKSLKT------RYSYRFVFAP----ETIGSIVWLSRNEE- 239 (435)
T ss_pred cceeeeeecccChhh-------ccCccchHHHHHHHHHHHHhccc------eeeEEEEecc----cccchhhhHhcchh-
Confidence 678999999999754 79999999999999999998862 7888888877 67899999998665
Q ss_pred hhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCC-CcchhhhhcC--C
Q 014338 299 LRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRV-AWEHEQFSRL--R 375 (426)
Q Consensus 299 ~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~-~~dHe~F~~~--g 375 (426)
.+++|..-+-+-++|.++..-|.+.-+. ++.+.++.. .+-++-+-++ ..++..+ .+|...|.-. +
T Consensus 240 ~lkhvk~GlVlsClGD~g~~nykrtrrg--na~iDki~~---~tl~~~~s~~-------~~~dF~p~G~DERQf~sPg~N 307 (435)
T COG4310 240 CLKHVKHGLVLSCLGDGGGPNYKRTRRG--NALIDKIAL---HTLKHCGSNF-------KAADFLPYGSDERQFCSPGFN 307 (435)
T ss_pred HHhhhhcceEEEEecCCCCccceecccc--chHHHHHHH---HHHhcCCcCc-------eeeecccCCCchhhccCCCcC
Confidence 4679998888889998766667765432 222223221 1111112111 1223222 3577788874 5
Q ss_pred CeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 014338 376 VTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLAV 422 (426)
Q Consensus 376 IPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae~la~ 422 (426)
+|+..+..... .++ .-|||..|+.+.|+.+.|+..-+.+-|.+-.
T Consensus 308 Lpvg~~~Rs~y-G~f-~~YHtSaDnL~fi~~e~L~~s~~~~memI~~ 352 (435)
T COG4310 308 LPVGGLQRSRY-GDF-DGYHTSADNLDFISPEGLAGSFQMMMEMILN 352 (435)
T ss_pred CchhhhhHhhc-CCC-ccccCccccccccCHHHHHHHHHHHHHHHHH
Confidence 77777754322 122 2468999999999999999998888777654
No 27
>PRK09104 hypothetical protein; Validated
Probab=98.11 E-value=1.5e-05 Score=83.85 Aligned_cols=99 Identities=11% Similarity=0.186 Sum_probs=77.9
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C--------------CCCCCCCCchhHHHHHHHHHHHH
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P--------------ALSVGSDSNGSGVVALLEVARLF 258 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p--------------~~~~GAddn~SG~a~LLElar~~ 258 (426)
.||+++++|.++ ..|.|++.+|+|+.+.. | -+..|+.|+-.|++++|++++.|
T Consensus 69 ~~l~a~~~g~~~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 69 PMVVAHHEGPTG-----DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CEEEEEecCCCC-----CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 599999987532 36899999999997642 1 25679999999999999999999
Q ss_pred HhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEec
Q 014338 259 SLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 259 ~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
.+... .++.+|.|++.+.||.|-.|.++|+.+... ..+..++|+.|
T Consensus 144 ~~~~~----~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~--~~~~d~~iv~E 189 (464)
T PRK09104 144 KAVTG----SLPVRVTILFEGEEESGSPSLVPFLEANAE--ELKADVALVCD 189 (464)
T ss_pred HHhcC----CCCCcEEEEEECccccCCccHHHHHHhhHH--hcCCCEEEEeC
Confidence 88642 345689999999999999999999986322 12457777777
No 28
>PRK05469 peptidase T; Provisional
Probab=98.09 E-value=2.1e-05 Score=81.35 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=66.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC------------------------------------------CC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP------------------------------------------AL 237 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p------------------------------------------~~ 237 (426)
..||+|.++|... ++.|+|++.+|||+.+.++ ..
T Consensus 55 ~~~v~~~~~g~~~----~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 55 NGYVMATLPANVD----KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred CeEEEEEecCCCC----CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 3589999988531 1369999999999997533 01
Q ss_pred CCCC----CCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHH
Q 014338 238 SVGS----DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (426)
Q Consensus 238 ~~GA----ddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~ 293 (426)
+-|+ .|+-+|++++|.+++.|.+.. ..++.+|.|++..+||.| .|+++++.
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~----~~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHP----EIKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCC----CCCCCCEEEEEecccccC-CCHHHhhh
Confidence 2255 789999999999999997653 235678999999999998 89999874
No 29
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.09 E-value=1.4e-05 Score=82.83 Aligned_cols=80 Identities=23% Similarity=0.182 Sum_probs=65.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.|++++++|... ..|.|++.+|+|+++. .|.-|+-.|++++|++++.|.+.. ..++++|.|+++..
T Consensus 60 ~nl~a~~~g~~~-----~~~~l~l~gH~DtVp~-----~g~~d~k~g~aa~l~a~~~l~~~~----~~~~~~i~~~~~~d 125 (413)
T PRK09290 60 GNLFGRLEGRDP-----DAPAVLTGSHLDTVPN-----GGRFDGPLGVLAGLEAVRTLNERG----IRPRRPIEVVAFTN 125 (413)
T ss_pred CcEEEEecCCCC-----CCCEEEEecCccCCCC-----CCCcCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEcC
Confidence 599999987431 2578999999999974 355677889999999999998753 34678999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 014338 281 GPY-----NYNGTHKWLRS 294 (426)
Q Consensus 281 Ee~-----g~~GS~~~v~~ 294 (426)
||. |..|++.+++.
T Consensus 126 EE~g~~g~~~~G~~~~~~~ 144 (413)
T PRK09290 126 EEGSRFGPAMLGSRVFTGA 144 (413)
T ss_pred CccccccCccccHHHHHcc
Confidence 998 57899998854
No 30
>PRK07906 hypothetical protein; Provisional
Probab=98.08 E-value=1.1e-05 Score=83.73 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=71.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
..||+++++|.++ ..+.|++.+|+|+++.. | -+..|+.|+-+|++++|++++.|.+..
T Consensus 51 ~~nv~~~~~g~~~-----~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~- 124 (426)
T PRK07906 51 RANVVARLPGADP-----SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTG- 124 (426)
T ss_pred ceEEEEEEeCCCC-----CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC-
Confidence 4699999987541 35789999999999762 1 246799999999999999999998753
Q ss_pred CCCCCCcceEEEEEeCCCCCC-CcchHHHHHhc
Q 014338 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSF 295 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g-~~GS~~~v~~~ 295 (426)
..++++|.|+++..||.| ..|++.++++.
T Consensus 125 ---~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 125 ---RRPPRDLVFAFVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred ---CCCCccEEEEEecCcccchhhhHHHHHHHH
Confidence 356789999999999985 57999998764
No 31
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.07 E-value=1.4e-05 Score=82.71 Aligned_cols=80 Identities=24% Similarity=0.182 Sum_probs=65.8
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.|++++++|.+. ..|.|++.+|+|+++. .|.-|+-.|++++|++++.|.+.. ..++.+|.|+++.+
T Consensus 63 ~n~~a~~~g~~~-----~~~~l~l~~H~DtVp~-----~g~~dgk~gvaa~l~a~~~l~~~~----~~~~~~v~~~~~~d 128 (412)
T PRK12893 63 GNLFGRRAGTDP-----DAPPVLIGSHLDTQPT-----GGRFDGALGVLAALEVVRTLNDAG----IRTRRPIEVVSWTN 128 (412)
T ss_pred CcEEEEeCCCCC-----CCCEEEEEecccCCCC-----CCcccchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEEcc
Confidence 499999988541 3589999999999964 345577889999999999998754 34678999999999
Q ss_pred CCCC-----CcchHHHHHh
Q 014338 281 GPYN-----YNGTHKWLRS 294 (426)
Q Consensus 281 Ee~g-----~~GS~~~v~~ 294 (426)
||.| ..|++.+...
T Consensus 129 EE~g~~~~~~~G~~~~~~~ 147 (412)
T PRK12893 129 EEGARFAPAMLGSGVFTGA 147 (412)
T ss_pred ccccccccccccHHHHhCc
Confidence 9986 8899988854
No 32
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.07 E-value=1.5e-05 Score=82.30 Aligned_cols=79 Identities=22% Similarity=0.172 Sum_probs=64.6
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.|++++++|.. +.|.|++.+|+|+++. .|-.|+-.|++++|++++.|.+.. .+++.+|.|+++..
T Consensus 62 ~nl~a~~~g~~------~~~~l~l~gH~DtVp~-----~g~~dg~~Gvaa~l~a~~~l~~~~----~~~~~~i~~~~~~d 126 (412)
T PRK12892 62 GNVFGRLPGPG------PGPALLVGSHLDSQNL-----GGRYDGALGVVAGLEAARALNEHG----IATRHPLDVVAWCD 126 (412)
T ss_pred CcEEEEecCCC------CCCeEEEEccccCCCC-----CCcccchHHHHHHHHHHHHHHHcC----CCCCCCeEEEEecC
Confidence 49999998854 2478999999999974 233466679999999999998753 45688999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 014338 281 GPY-----NYNGTHKWLRS 294 (426)
Q Consensus 281 Ee~-----g~~GS~~~v~~ 294 (426)
||. ++.||+.++.+
T Consensus 127 EE~~~~~~~~~Gs~~~~~~ 145 (412)
T PRK12892 127 EEGSRFTPGFLGSRAYAGR 145 (412)
T ss_pred cccccccCccccHHHHHcC
Confidence 997 57899999853
No 33
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.05 E-value=2.1e-05 Score=80.26 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=68.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
..|+++++ |.+ .|.|++.+|+|+.+.. | -+..|+.|+-.|++++|..++.|.+..
T Consensus 48 ~~~l~a~~-g~~-------~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~ 119 (377)
T PRK08588 48 RANLVAEI-GSG-------SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQG 119 (377)
T ss_pred CceEEEEe-CCC-------CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcC
Confidence 46999998 422 3799999999999862 1 135688899999999999999997753
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
..++.+|.|++..+||.|..|+++++++
T Consensus 120 ----~~~~~~i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 120 ----QLLNGTIRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred ----CCCCCcEEEEEEcccccCchhHHHHHhc
Confidence 3467899999999999999999999986
No 34
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=98.02 E-value=2.4e-05 Score=81.12 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=63.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC---------------------------------------------
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------------------------------------------- 234 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------------------------------------------- 234 (426)
..||+|+++|... .+.|.|+++||+||....
T Consensus 57 ~gnv~~~~~~~~~----~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 57 NGYVIATIPSNTD----KDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred ceEEEEEecCCCC----CCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 6899999998641 124999999999998630
Q ss_pred --CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHH
Q 014338 235 --PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (426)
Q Consensus 235 --p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~ 293 (426)
...-.| .|+=+|+|++|++++.|.+.. ..++.+|.|+|..+||.| .|++.+..
T Consensus 133 ~~g~~l~G-~D~KgglAa~l~A~~~L~e~~----~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 133 TDGTTLLG-ADDKAGIAEIMTAADYLINHP----EIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred cCCCEeec-ccCHHHHHHHHHHHHHHHhCC----CCCCCCEEEEEECcccCC-cCcchhhh
Confidence 011235 466779999999999998752 124568999999999988 59988764
No 35
>PRK07473 carboxypeptidase; Provisional
Probab=97.99 E-value=4.3e-05 Score=78.44 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=75.0
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C-------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~------p-------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~ 267 (426)
.|++++++|... ..|.|++.+|+|+.+.. | -+..|+.|.-+|++++|..++.|.+.. .
T Consensus 62 ~~~~~~~~~~~~-----~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~----~ 132 (376)
T PRK07473 62 DCVRARFPHPRQ-----GEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAG----I 132 (376)
T ss_pred CeEEEEeCCCCC-----CCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcC----C
Confidence 589999876321 35899999999988421 2 367899999999999999999997753 2
Q ss_pred CCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEecc
Q 014338 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (426)
Q Consensus 268 ~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~ 311 (426)
.++.+|.|++...||.|..|++.++++.. ....++|+.|-
T Consensus 133 ~~~~~v~~~~~~dEE~g~~g~~~~~~~~~----~~~d~~iv~ep 172 (376)
T PRK07473 133 TTPLPITVLFTPDEEVGTPSTRDLIEAEA----ARNKYVLVPEP 172 (376)
T ss_pred CCCCCEEEEEeCCcccCCccHHHHHHHhh----ccCCEEEEeCC
Confidence 34567999999999999999999998632 12356666654
No 36
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=97.98 E-value=0.0005 Score=73.47 Aligned_cols=166 Identities=23% Similarity=0.307 Sum_probs=106.0
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEe
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~ 278 (426)
...||+|.++.-.. ...+-||+++.|++.. | +-|..|++.+|.++|.|++.. -| .++|+|+++
T Consensus 2 ~G~nvy~i~rapR~----d~tEaivl~~~~~~~~-------~-~~n~~~v~l~lal~~~~~~~~---~w--sKDii~l~~ 64 (504)
T PF04114_consen 2 SGTNVYGILRAPRG----DGTEAIVLVVPWRDSD-------G-EYNAGGVALALALARYFRRQS---YW--SKDIIFLFT 64 (504)
T ss_pred CceEEEEEEecCCC----CCceeEEEEEecCCCC-------c-ccchhhHHHHHHHHHHhhhch---hh--hccEEEEec
Confidence 46799999986442 2478999999998653 2 567899999999999999763 24 689999998
Q ss_pred CCCCCCCcchHHHHHhccHh------------hhcCeeEEEEeccccCCCCceeEEecCCCcchHHHHHHHHHHHHHHHh
Q 014338 279 SGGPYNYNGTHKWLRSFDQR------------LRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEEL 346 (426)
Q Consensus 279 ~gEe~g~~GS~~~v~~~~~~------------~~~~i~~vinlD~iG~~~~~l~~hvs~~p~~~~~~~~~~~l~~~a~~~ 346 (426)
+. +..|.+.|+++|-.. ....|.+.|++|--+...+.+.+...+.-..-.-.+++..+.+.+++.
T Consensus 65 ~~---~~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~ 141 (504)
T PF04114_consen 65 DD---ELAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKE 141 (504)
T ss_pred CC---cchHHHHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhc
Confidence 75 468999999875211 013688999999777543444444433211000124555555556666
Q ss_pred Cceeccc--cccccC-CCC-------------------CCCcchhhhhcCCCeEEEEeec
Q 014338 347 GFKVGLK--HKKINI-SNP-------------------RVAWEHEQFSRLRVTAATLSEL 384 (426)
Q Consensus 347 ~~~~~~~--~~ki~~-~~~-------------------~~~~dHe~F~~~gIPa~tls~~ 384 (426)
|+...+. ..+... +.+ .+...|-.|.+.+|.++|+...
T Consensus 142 gi~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~y~I~aiTl~~~ 201 (504)
T PF04114_consen 142 GIPMGVSLHLQPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLRYRIDAITLRGV 201 (504)
T ss_pred CCCccccccccccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhhcCccEEEEecc
Confidence 5433221 100000 000 1223688899999999999654
No 37
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.95 E-value=4.7e-05 Score=78.41 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=74.3
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C----------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P----------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-------p----------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
..|++++++|.+. ..|+|++.+|+|+++.. | -+..|+.|+=+|++++|.+++.|.+..
T Consensus 57 ~~~l~~~~~g~~~-----~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~ 131 (400)
T TIGR01880 57 KPVVVLTWPGSNP-----ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASG 131 (400)
T ss_pred ceeEEEEEecCCC-----CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcC
Confidence 4689999988542 24899999999999752 1 135688888899999999999998753
Q ss_pred CCCCCCCcceEEEEEeCCCCCCC-cchHHHHHhccHhhhcCeeEEEEec
Q 014338 263 SNPKTRGRYNILFGLTSGGPYNY-NGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~-~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
..++++|.|++..+||.|- .|.+.++++.. ...+.+.+++|
T Consensus 132 ----~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~---~~~~~~~~~~d 173 (400)
T TIGR01880 132 ----FKFKRTIHISFVPDEEIGGHDGMEKFAKTDE---FKALNLGFALD 173 (400)
T ss_pred ----CCCCceEEEEEeCCcccCcHhHHHHHHHhhh---ccCCceEEEEc
Confidence 3467899999999999864 69999887621 22344555554
No 38
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.93 E-value=3.3e-05 Score=81.80 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=63.2
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC--------------------CCCCCCC---CchhHHHHHHHHHHH
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--------------------ALSVGSD---SNGSGVVALLEVARL 257 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p--------------------~~~~GAd---dn~SG~a~LLElar~ 257 (426)
.|++++++|.... ...|.|++.+|+|+++..+ -+++|+. |+..|++++|++++.
T Consensus 47 ~n~~~~~~~~~g~---~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~ 123 (477)
T TIGR01893 47 GNVLIRKPATPGY---ENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED 123 (477)
T ss_pred CeEEEEEcCCCCC---CCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc
Confidence 5999999875321 1358899999999987531 1355663 889999999998764
Q ss_pred HHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 258 ~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
. ..+..+|.++++..||.|..||+++..+
T Consensus 124 ---~-----~~~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 124 ---N-----NLKHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred ---C-----CCCCCCEEEEEEeccccCchhhhhcChh
Confidence 1 1234589999999999999999999764
No 39
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.93 E-value=4.1e-05 Score=79.47 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=69.9
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLL 261 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l 261 (426)
...||+|+++|.+ +.|.|++.+|+|+.+.. | -++.|+.|+-+|++++|.+++.|.+.
T Consensus 79 ~~~nlia~~~g~~------~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~ 152 (422)
T PRK06915 79 DSPNIVATLKGSG------GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIES 152 (422)
T ss_pred CCceEEEEEcCCC------CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHc
Confidence 3589999998754 25799999999999862 1 15678989999999999999999875
Q ss_pred cCCCCCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
. ..++.+|.|+++.+||.|-.|+...+.+
T Consensus 153 ~----~~~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 153 G----IELKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred C----CCCCCcEEEEEecccccCCcchHHHHhc
Confidence 3 3456789999999999888898887764
No 40
>PRK07907 hypothetical protein; Provisional
Probab=97.92 E-value=5.5e-05 Score=79.33 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=74.3
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
..||+++++|.. ..|.|++.+|+|+.+.. | -+..|+.|+-+|++++|..++.| .
T Consensus 70 ~~nl~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~-- 140 (449)
T PRK07907 70 APAVIGTRPAPP------GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G-- 140 (449)
T ss_pred CCEEEEEecCCC------CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--
Confidence 469999998743 25799999999999752 1 24669999999999999999998 2
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEecc
Q 014338 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~ 311 (426)
.+++.+|.|++.+.||.|-.|+++++++.... -+..++|+.|.
T Consensus 141 ----~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~--~~~d~~iv~E~ 183 (449)
T PRK07907 141 ----GDLPVGVTVFVEGEEEMGSPSLERLLAEHPDL--LAADVIVIADS 183 (449)
T ss_pred ----cCCCCcEEEEEEcCcccCCccHHHHHHhchHh--hcCCEEEEecC
Confidence 12467899999999999889999999874321 12356666554
No 41
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.91 E-value=5.9e-05 Score=78.22 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=66.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSN 264 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~ 264 (426)
-.|++|+++|.. +.|.|++.+|+|+.+.. | -+..|+.|+=+|++++|..++.|.+..
T Consensus 71 ~~nlia~~~g~~------~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~-- 142 (427)
T PRK13013 71 RWNLVARRQGAR------DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVY-- 142 (427)
T ss_pred cceEEEEecCCC------CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhC--
Confidence 469999998754 25789999999999752 1 145589999999999999999998763
Q ss_pred CCCCCcceEEEEEeCCCCCCCcchHHHHH
Q 014338 265 PKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (426)
Q Consensus 265 ~~~~p~~~I~F~~~~gEe~g~~GS~~~v~ 293 (426)
..++.+|.|++..+||.|-.|...|+.
T Consensus 143 --~~~~~~v~~~~~~dEE~g~~~g~~~l~ 169 (427)
T PRK13013 143 --PDFAGSIEISGTADEESGGFGGVAYLA 169 (427)
T ss_pred --CCCCccEEEEEEeccccCChhHHHHHH
Confidence 345779999999999987664444443
No 42
>PRK07338 hypothetical protein; Provisional
Probab=97.91 E-value=5.1e-05 Score=78.18 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=67.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--C-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--P-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--p-----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~ 267 (426)
.|++++++|.. .+.|++.+|+|+.+.. | -+..|+.|.=+|++++|..++.|.+.. .
T Consensus 81 ~nl~a~~~~~~-------~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~----~ 149 (402)
T PRK07338 81 PALHVSVRPEA-------PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSP----L 149 (402)
T ss_pred CeEEEEECCCC-------CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcC----C
Confidence 69999996532 3579999999998752 1 145688899999999999999997642 2
Q ss_pred CCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 268 RGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 268 ~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
.++.+|.|++..+||.|..|++.++++.
T Consensus 150 ~~~~~i~~~~~~dEE~g~~g~~~~~~~~ 177 (402)
T PRK07338 150 ADKLGYDVLINPDEEIGSPASAPLLAEL 177 (402)
T ss_pred CCCCCEEEEEECCcccCChhhHHHHHHH
Confidence 3567899999999999999999999864
No 43
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=97.91 E-value=0.00024 Score=72.54 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=102.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCC--
Q 014338 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN-- 316 (426)
Q Consensus 239 ~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~-- 316 (426)
.-|-||-.|+++|+|++|.+.+. .+++++.|+++..||.|+.|++.-.....+ ..+|.+|..-..+
T Consensus 174 ~kalDdR~g~a~l~e~l~~l~~~------~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p------D~aI~vDv~~~~d~~ 241 (350)
T TIGR03107 174 SKAWDNRYGVLMILELLESLKDQ------ELPNTLIAGANVQEEVGLRGAHVSTTKFNP------DIFFAVDCSPAGDIY 241 (350)
T ss_pred EeccccHHHHHHHHHHHHHhhhc------CCCceEEEEEEChhhcCchhhhhHHhhCCC------CEEEEEecCCcCCCC
Confidence 34679999999999999999753 257899999999999999999976665433 3677777553321
Q ss_pred ---------CceeEEe-cCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcc--hhhhhcCCCeEEEEeec
Q 014338 317 ---------NELWIHV-SKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWE--HEQFSRLRVTAATLSEL 384 (426)
Q Consensus 317 ---------~~l~~hv-s~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~d--He~F~~~gIPa~tls~~ 384 (426)
+..-... ..+..+ ..+.+.+.++|++.+++.+..... -.+| ...|+..|+|++.++-
T Consensus 242 ~~~~~~lg~Gp~i~~~D~~~i~~---~~l~~~l~~~A~~~~I~~Q~~~~~-------gGtDa~~~~~~~~Gvpt~~i~i- 310 (350)
T TIGR03107 242 GDQGGKLGEGTLLRFFDPGHIML---PRMKDFLLTTAEEAGIKYQYYVAK-------GGTDAGAAHLKNSGVPSTTIGV- 310 (350)
T ss_pred CCCccccCCCceEEEecCCCCCC---HHHHHHHHHHHHHcCCCcEEecCC-------CCchHHHHHHhCCCCcEEEEcc-
Confidence 1111111 112222 367777888899988888752110 1233 3367889999999974
Q ss_pred CCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 014338 385 SAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLAV 422 (426)
Q Consensus 385 ~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae~la~ 422 (426)
+. .| -||+. +.++.+.+.+.++++.+.+..
T Consensus 311 p~--Ry---~Hs~~---e~i~~~D~~~~~~Ll~~~i~~ 340 (350)
T TIGR03107 311 CA--RY---IHSHQ---TLYSIDDFLAAQAFLQAIVKK 340 (350)
T ss_pred Cc--cc---ccChh---heeeHHHHHHHHHHHHHHHHh
Confidence 22 22 34555 567888888888888776643
No 44
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.83 E-value=5.8e-05 Score=76.32 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=68.3
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
..||++.+.|.+ .++|++.+|+|+.+.. | -+..|+.|+=+|++++|.+++.|.+..
T Consensus 46 ~~nl~~~~~~~~-------~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~- 117 (364)
T TIGR01892 46 KSNLVAVIGPSG-------AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ- 117 (364)
T ss_pred cccEEEEecCCC-------CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC-
Confidence 579999986532 4689999999999762 2 246688999999999999999998642
Q ss_pred CCCCCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
.+.+|.|++..+||.|..|+++++++.
T Consensus 118 -----~~~~v~~~~~~~EE~g~~G~~~~~~~~ 144 (364)
T TIGR01892 118 -----LKKPLHLALTADEEVGCTGAPKMIEAG 144 (364)
T ss_pred -----cCCCEEEEEEeccccCCcCHHHHHHhc
Confidence 256899999999999999999999874
No 45
>PRK08262 hypothetical protein; Provisional
Probab=97.83 E-value=9.3e-05 Score=78.41 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=69.8
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-------------------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-------------------ALSVGSDSNGSGVVALLEVARLFSLL 261 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-------------------~~~~GAddn~SG~a~LLElar~~~~l 261 (426)
.|+++.++|.++ ..++|++.+|+|+.+..+ -+..|+.|+-+|++++|.+++.|.+.
T Consensus 98 ~~vv~~~~g~~~-----~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~ 172 (486)
T PRK08262 98 HSLLYTWKGSDP-----SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQ 172 (486)
T ss_pred ccEEEEEECCCC-----CCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHc
Confidence 578888887541 248999999999997631 13569999999999999999999875
Q ss_pred cCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
. ..++.+|.|++..+||.|-.|++++++.+
T Consensus 173 ~----~~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 173 G----FQPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred C----CCCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 3 24577999999999998888999998764
No 46
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=97.83 E-value=0.00011 Score=74.66 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~ 268 (426)
..|+++++.|.. +.|.|++.+|+|+++..+ +.-.|.+. .+|++++|.+++.|.+.. .+
T Consensus 43 ~~~vva~~~~~~------~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~-~~~~a~~l~a~~~l~~~~----~~ 111 (363)
T TIGR01891 43 ATGVVATIGGGK------PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH-DLHTAILLGTAKLLKKLA----DL 111 (363)
T ss_pred CcEEEEEEeCCC------CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC-HHHHHHHHHHHHHHHhch----hh
Confidence 368999987643 248999999999997421 11222222 267899999999988753 23
Q ss_pred CcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEecc
Q 014338 269 GRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (426)
Q Consensus 269 p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~ 311 (426)
++.+|.|+++..||.+ .|+++++++. ..+++.++|+++-
T Consensus 112 ~~~~i~~~~~~dEE~~-~G~~~~~~~~---~~~~~d~~i~~e~ 150 (363)
T TIGR01891 112 LEGTVRLIFQPAEEGG-GGATKMIEDG---VLDDVDAILGLHP 150 (363)
T ss_pred CCceEEEEEeecCcCc-chHHHHHHCC---CCCCcCEEEEECC
Confidence 5679999999999986 7999998763 2345667777653
No 47
>PRK08201 hypothetical protein; Provisional
Probab=97.82 E-value=8.9e-05 Score=77.87 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=74.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
.||++++.|.. ..|+|++.+|+|+.+.. | -+..|+.|+=.|++++|++++.|.+...
T Consensus 67 ~~l~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~ 140 (456)
T PRK08201 67 PIVYADWLHAP------GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEG 140 (456)
T ss_pred CEEEEEecCCC------CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcC
Confidence 58999887642 36799999999997642 1 2567999999999999999999977532
Q ss_pred CCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEec
Q 014338 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
.++.+|.|++...||.|-.|+.+|+++.... . +..++|+.|
T Consensus 141 ----~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~-~-~~d~~ii~e 181 (456)
T PRK08201 141 ----TLPVNVKFCIEGEEEIGSPNLDSFVEEEKDK-L-AADVVLISD 181 (456)
T ss_pred ----CCCCCEEEEEEcccccCCccHHHHHHhhHHh-c-cCCEEEEeC
Confidence 3467999999999999999999999864221 1 224556555
No 48
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.82 E-value=0.0001 Score=74.94 Aligned_cols=84 Identities=20% Similarity=0.196 Sum_probs=66.5
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
..|+++++ |.. .|.|++.+|+|+.+... -+..|+.|+-+|++++|..++.|.+..
T Consensus 47 ~~n~~~~~-g~~-------~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~ 118 (375)
T PRK13009 47 VKNLWARR-GTE-------GPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAH 118 (375)
T ss_pred CcEEEEEe-cCC-------CCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhc
Confidence 46999987 532 57999999999997521 145688899999999999999987653
Q ss_pred CCCCCCCcceEEEEEeCCCCCC-CcchHHHHHhc
Q 014338 263 SNPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSF 295 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g-~~GS~~~v~~~ 295 (426)
..++.+|.|+++.+||.+ ..|++.+++..
T Consensus 119 ----~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~ 148 (375)
T PRK13009 119 ----PDHKGSIAFLITSDEEGPAINGTVKVLEWL 148 (375)
T ss_pred ----CCCCceEEEEEEeecccccccCHHHHHHHH
Confidence 346789999999999974 46999998653
No 49
>PRK07079 hypothetical protein; Provisional
Probab=97.80 E-value=0.00011 Score=77.45 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=70.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC---------C---------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA---------P---------ALSVGSDSNGSGVVALLEVARLFSLL 261 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~---------p---------~~~~GAddn~SG~a~LLElar~~~~l 261 (426)
..||++++.|.. +.|.|++.+|+|+.+.. | -+..|+.|+=+|++++|..++.|.+.
T Consensus 72 ~~~vva~~~~~~------~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~ 145 (469)
T PRK07079 72 GPFLIAERIEDD------ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA 145 (469)
T ss_pred CCEEEEEeCCCC------CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh
Confidence 469999986532 25899999999998741 2 24669999999999999999998653
Q ss_pred cCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
. +.+++++|.|++...||.|..|++.++++.
T Consensus 146 ~---~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~ 176 (469)
T PRK07079 146 R---GGRLGFNVKLLIEMGEEIGSPGLAEVCRQH 176 (469)
T ss_pred c---CCCCCCCEEEEEECccccCCccHHHHHHHh
Confidence 2 235678999999999999999999999875
No 50
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00044 Score=70.83 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=73.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
-.+++-+++|+++ ..+-|++.+|.|+++.+. -++-||.|.=+-.++.||.+|.|..-
T Consensus 74 ~~~~l~T~~GS~P-----~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~- 147 (420)
T KOG2275|consen 74 KYVLLYTWLGSDP-----ELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKAS- 147 (420)
T ss_pred eeEEEEEeeCCCC-----CccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhc-
Confidence 6788889999884 589999999999998841 25679999988899999999999864
Q ss_pred CCCCCCCcceEEEEEeCCCCCC-CcchHHHHHh
Q 014338 263 SNPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g-~~GS~~~v~~ 294 (426)
+.+|+|+|...|.-+||.| ..|.+.|++.
T Consensus 148 ---g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~ 177 (420)
T KOG2275|consen 148 ---GFKPKRTIHLSFVPDEEIGGHIGMKEFAKT 177 (420)
T ss_pred ---CCCcCceEEEEecCchhccCcchHHHHhhh
Confidence 3568999999999999976 9999999983
No 51
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.74 E-value=0.00011 Score=74.28 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=70.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-C-------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcce
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-P-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-p-------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~ 272 (426)
.|++|++.| ..|.|++.+|+|+.+.. | -+..|+.|+-+|++++|+.++.| .. .++++
T Consensus 49 ~n~i~~~~~--------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~~------~~~~~ 113 (348)
T PRK04443 49 GNARGPAGD--------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-EA------LVRAR 113 (348)
T ss_pred CcEEEEcCC--------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-cc------cCCCC
Confidence 488998732 14799999999999742 1 35779999999999999999998 22 35789
Q ss_pred EEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEec
Q 014338 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
|.|+++.+||.|..|...++.+. . ...++|+.|
T Consensus 114 i~~~~~~dEE~g~~~~~~~l~~~----~-~~d~~iv~E 146 (348)
T PRK04443 114 VSFVGAVEEEAPSSGGARLVADR----E-RPDAVIIGE 146 (348)
T ss_pred EEEEEEcccccCChhHHHHHHhc----c-CCCEEEEeC
Confidence 99999999999988888888752 1 356777766
No 52
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.73 E-value=9.9e-05 Score=74.11 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=59.7
Q ss_pred CCEEEEEecCCCCCCCC--------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHH
Q 014338 219 LPTIAIVASYDTFGAAP--------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHK 290 (426)
Q Consensus 219 ~~~Ivi~AHyDs~g~~p--------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~ 290 (426)
.|.|++.+|+|+.+... -+..|+.|+-+|++++|++++.|.+.. ++.+|.|++..+||.|..|++.
T Consensus 55 ~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~------~~~~v~~~~~~dEE~g~~G~~~ 128 (347)
T PRK08652 55 KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKEF------EDLNVGIAFVSDEEEGGRGSAL 128 (347)
T ss_pred CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhcc------cCCCEEEEEecCcccCChhHHH
Confidence 47899999999997621 156799999999999999999997432 3468999999999998889999
Q ss_pred HHHhc
Q 014338 291 WLRSF 295 (426)
Q Consensus 291 ~v~~~ 295 (426)
++++.
T Consensus 129 ~~~~~ 133 (347)
T PRK08652 129 FAERY 133 (347)
T ss_pred HHHhc
Confidence 99864
No 53
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.73 E-value=0.00013 Score=73.52 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCc
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~ 270 (426)
.|+++++.+. ..+.|++.+|+|+.+..+ -+..|+.|+-+|++++|.+++.|.+ ++
T Consensus 50 ~~~~~~~~~~-------~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~--------~~ 114 (352)
T PRK13007 50 NSVVARTDLG-------RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE--------PA 114 (352)
T ss_pred CeEEEEccCC-------CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc--------cC
Confidence 4899998431 135799999999998631 2578999999999999999999932 46
Q ss_pred ceEEEEEeCCCCCCC--cchHHHHHhccHhhhcCeeEEEEecc
Q 014338 271 YNILFGLTSGGPYNY--NGTHKWLRSFDQRLRESIDYAICLNS 311 (426)
Q Consensus 271 ~~I~F~~~~gEe~g~--~GS~~~v~~~~~~~~~~i~~vinlD~ 311 (426)
++|.|++.+.||.+- .|++.++..... ..+..++|+.|.
T Consensus 115 ~~i~~~~~~~EE~~~~~~G~~~~~~~~~~--~~~~d~~i~~ep 155 (352)
T PRK13007 115 HDLTLVFYDCEEVEAEANGLGRLAREHPE--WLAGDFAILLEP 155 (352)
T ss_pred CCeEEEEEecccccCCcccHHHHHHhccc--ccCCCEEEEecC
Confidence 789999999999753 588888875421 233566776663
No 54
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.70 E-value=0.00018 Score=73.52 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=67.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
..||++++.|. ..|.|++.+|+|+.+.. | -+..|+.|+=.|++++|.+++.|.+..
T Consensus 52 ~~nv~a~~~~~-------~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~- 123 (385)
T PRK07522 52 KANLFATIGPA-------DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAP- 123 (385)
T ss_pred cccEEEEeCCC-------CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCC-
Confidence 47999998543 15799999999998752 1 246688888889999999999997642
Q ss_pred CCCCCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
++++|.|++..+||.|..|+++++++.
T Consensus 124 -----~~~~i~~~~~~dEE~g~~G~~~l~~~~ 150 (385)
T PRK07522 124 -----LRRPLHLAFSYDEEVGCLGVPSMIARL 150 (385)
T ss_pred -----CCCCEEEEEEeccccCCccHHHHHHHh
Confidence 356899999999999889999999763
No 55
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.70 E-value=0.00017 Score=75.24 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=68.9
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC---C--------------CCCCCCCchhHHHHHHHHHHHHHhc
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLL 261 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p---~--------------~~~GAddn~SG~a~LLElar~~~~l 261 (426)
...||+++++|..+ ..|.|++.+|+|+.+..+ | +..|+.|+-+|++++|..++.|.+.
T Consensus 82 ~~~nl~a~~~g~~~-----~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~ 156 (427)
T PRK06837 82 GAPNVVGTYRPAGK-----TGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAA 156 (427)
T ss_pred CCceEEEEecCCCC-----CCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHc
Confidence 36899999988542 368999999999998631 1 2449999999999999999999765
Q ss_pred cCCCCCCCcceEEEEEeCCCCCCCcchHHHHH
Q 014338 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (426)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~ 293 (426)
. ..++++|.|+++..||.+..|+...+.
T Consensus 157 ~----~~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 157 G----LAPAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred C----CCCCCcEEEEEEeccccCCHhHHHHHh
Confidence 3 346789999999999988788877664
No 56
>PRK06446 hypothetical protein; Provisional
Probab=97.68 E-value=0.00018 Score=75.15 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=68.0
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~ 262 (426)
-.|+++++.+ + ..|+|++.+|+|+++.. | -+..||.|+-+|++++|...+.|.+..
T Consensus 50 ~~~lia~~~~-~------~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~ 122 (436)
T PRK06446 50 HPVVYGEINV-G------AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH 122 (436)
T ss_pred CCEEEEEecC-C------CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC
Confidence 4689999853 2 25799999999997642 1 256799999999999999998886542
Q ss_pred CCCCCCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
+++.+|.|++...||.|-.|+++|++++
T Consensus 123 -----~~~~~i~~~~~~dEE~g~~g~~~~l~~~ 150 (436)
T PRK06446 123 -----KLNVNVKFLYEGEEEIGSPNLEDFIEKN 150 (436)
T ss_pred -----CCCCCEEEEEEcccccCCHhHHHHHHHH
Confidence 2467999999999999999999999874
No 57
>PRK09864 putative peptidase; Provisional
Probab=97.68 E-value=0.00057 Score=69.90 Aligned_cols=157 Identities=9% Similarity=0.060 Sum_probs=101.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCC--
Q 014338 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN-- 316 (426)
Q Consensus 239 ~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~-- 316 (426)
.=|-||-.|+++|+|++|.+.+ +++++.|+++..||.|+.|++.-.....+ ..+|.+|+.-..+
T Consensus 171 ~kalDnR~g~~~lle~l~~l~~--------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P------DiaIavDvt~~~d~p 236 (356)
T PRK09864 171 GKALDNRIGCAMMAELLQTVNN--------PEITLYGVGSVEEEVGLRGAQTSAEHIKP------DVVIVLDTAVAGDVP 236 (356)
T ss_pred EEeCccHHHHHHHHHHHHHhhc--------CCCeEEEEEEcchhcchHHHHHHHhcCCC------CEEEEEecccCCCCC
Confidence 3467999999999999999954 36899999999999999999988776543 3477777553221
Q ss_pred ---Ccee-EEecCCCc------c-hHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhcCCCeEEEEeecC
Q 014338 317 ---NELW-IHVSKPPE------N-AYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSELS 385 (426)
Q Consensus 317 ---~~l~-~hvs~~p~------~-~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~gIPa~tls~~~ 385 (426)
...+ ...++-|- . -.-..+.+.+.++|++.+++++.....-. ..-.+...++..|+|++.++= +
T Consensus 237 ~~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~g----gTDa~~i~~~~~Gvpt~~isi-P 311 (356)
T PRK09864 237 GIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTG----ATDGGRYNVMGGGRPVVALCL-P 311 (356)
T ss_pred CCcccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCC----CchHHHHHHhCCCCcEEEEee-c
Confidence 0000 11122110 0 01146777788889998888876321100 111233446778999999973 3
Q ss_pred CCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 014338 386 AAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLAV 422 (426)
Q Consensus 386 ~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae~la~ 422 (426)
. .| -||+. +-++.+.+...++++.+.+.+
T Consensus 312 ~--RY---~Hs~~---e~~~~~D~e~~~~Ll~~~~~~ 340 (356)
T PRK09864 312 T--RY---LHANS---GMISKADYDALLTLIRDFLTT 340 (356)
T ss_pred c--Cc---CCCcc---eEeEHHHHHHHHHHHHHHHHh
Confidence 2 23 35666 457778888888887776643
No 58
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.63 E-value=0.00066 Score=67.68 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=89.8
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccc------cC
Q 014338 241 SDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV------GS 314 (426)
Q Consensus 241 Addn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~i------G~ 314 (426)
|-||-.|+++|+|++|.+.... .++++.|+|+..||.|+.|++.......+ ..+|.+|.. +.
T Consensus 132 alDdR~g~~~lle~l~~l~~~~------~~~~v~~v~tvqEEvG~rGA~~aa~~i~P------D~ai~vD~~~a~d~~~~ 199 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEKE------LDVDVYFVFTVQEEVGLRGAKTAAFRIKP------DIAIAVDVTPAGDTPGS 199 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTSS-------SSEEEEEEESSCTTTSHHHHHHHHHH-C------SEEEEEEEEEESSSTTS
T ss_pred eCCchhHHHHHHHHHHHHhhcC------CCceEEEEEEeeeeecCcceeecccccCC------CEEEEEeeeccCCCCCC
Confidence 4689999999999999998642 25899999999999999999988776433 345555544 22
Q ss_pred CCC------ceeEEec-CCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhh--cCCCeEEEEeecC
Q 014338 315 WNN------ELWIHVS-KPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFS--RLRVTAATLSELS 385 (426)
Q Consensus 315 ~~~------~l~~hvs-~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~--~~gIPa~tls~~~ 385 (426)
... ...+-+. +.+ -.-.++.+.+.++|++.+++++..... ...+|-..|. ..|+|++.++- +
T Consensus 200 ~~~~~~lG~Gp~i~~~D~~~--i~~~~l~~~l~~~A~~~~Ip~Q~~~~~------~ggTDa~~~~~~~~Gi~t~~i~i-P 270 (292)
T PF05343_consen 200 DEKEQGLGKGPVIRVGDSSM--IPNPKLVDKLREIAEENGIPYQREVFS------GGGTDAGAIQLSGGGIPTAVISI-P 270 (292)
T ss_dssp TTTTSCTTS-EEEEEEETTE--ESHHHHHHHHHHHHHHTT--EEEEEES------SSSSTHHHHHTSTTSSEEEEEEE-E
T ss_pred chhhccCCCCcEEEEccCCC--CCCHHHHHHHHHHHHHcCCCeEEEecC------CcccHHHHHHHcCCCCCEEEEec-c
Confidence 111 1112221 111 112467778888899988888763111 1234544454 46999999974 2
Q ss_pred CCCCccccCCCCCCCcCCCCHHHHHHHHH
Q 014338 386 AAPELLESTGGLLDSRHFVDETSFIRSVK 414 (426)
Q Consensus 386 ~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~ 414 (426)
. ++.||+. +.++.+.+...++
T Consensus 271 ~-----ry~Hs~~---e~~~~~Di~~~~~ 291 (292)
T PF05343_consen 271 C-----RYMHSPV---EVIDLDDIEATID 291 (292)
T ss_dssp E-----BSTTSTT---EEEEHHHHHHHHH
T ss_pred c-----ccCCCcc---eEEEHHHHHHHhh
Confidence 1 2345655 4556666665544
No 59
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.62 E-value=0.00019 Score=73.32 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=65.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
-.|+++++ |.+ .+.|++.+|+|+.+.. | -+..|+.|+=+|++++|++++.|.+..
T Consensus 60 ~~nvia~~-g~~-------~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~- 130 (383)
T PRK05111 60 KFNLLASL-GSG-------EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTK- 130 (383)
T ss_pred CceEEEEe-CCC-------CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcC-
Confidence 46999998 532 3479999999999752 1 256788888889999999999997531
Q ss_pred CCCCCCcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
.+.+|.|++..+||.|..|+++++++
T Consensus 131 -----~~~~i~~~~~~~EE~g~~G~~~~~~~ 156 (383)
T PRK05111 131 -----LKKPLYILATADEETSMAGARAFAEA 156 (383)
T ss_pred -----CCCCeEEEEEeccccCcccHHHHHhc
Confidence 35689999999999998999999976
No 60
>PRK06156 hypothetical protein; Provisional
Probab=97.61 E-value=0.00033 Score=75.14 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCEEEEEecCCCCCCC------------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEE
Q 014338 219 LPTIAIVASYDTFGAA------------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGL 277 (426)
Q Consensus 219 ~~~Ivi~AHyDs~g~~------------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~ 277 (426)
.|.|++.+|+|+++.. | -+..|+.|+-.|++++|...+.|.+.. .+++++|.|++
T Consensus 109 ~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~----~~~~~~i~~~~ 184 (520)
T PRK06156 109 SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSG----LPLARRIELLV 184 (520)
T ss_pred CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcC----CCCCceEEEEE
Confidence 4789999999999752 1 145688899999999999999997643 34567999999
Q ss_pred eCCCCCCCcchHHHHHhccHhhhcCeeEEEEecc
Q 014338 278 TSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (426)
Q Consensus 278 ~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~ 311 (426)
+..||.|..|+++|+++.. ...+++|+|.
T Consensus 185 ~~dEE~g~~G~~~~~~~~~-----~~~~~~~~D~ 213 (520)
T PRK06156 185 YTTEETDGDPLKYYLERYT-----PPDYNITLDA 213 (520)
T ss_pred ecccccCchhHHHHHHhcC-----CCCeEEeeCC
Confidence 9999999999999998642 2346666664
No 61
>PRK13004 peptidase; Reviewed
Probab=97.59 E-value=0.00038 Score=71.81 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=65.0
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
.|+++++.|. .|+|++.+|+|+.+.. | -+..|+.|+-+|++++|.+++.|.+..
T Consensus 59 ~n~~a~~~~~--------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~- 129 (399)
T PRK13004 59 GNVLGYIGHG--------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLG- 129 (399)
T ss_pred CeEEEEECCC--------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcC-
Confidence 4899988541 3799999999999852 1 135588899999999999999998753
Q ss_pred CCCCCCcceEEEEEeCCCCC-CCcchHHHHHh
Q 014338 264 NPKTRGRYNILFGLTSGGPY-NYNGTHKWLRS 294 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~-g~~GS~~~v~~ 294 (426)
..++.+|.|+++.+||. +-.|+++++++
T Consensus 130 ---~~~~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 130 ---LDDEYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred ---CCCCCeEEEEEEcccccCcchhHHHHHHh
Confidence 34678999999999995 45688888875
No 62
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.58 E-value=0.0003 Score=72.09 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=64.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p----------------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
..|+++.. |. ..|+|++.+|+|+.+... -+..|+.|+-.|++++|++++.|.+..
T Consensus 63 ~~~~~~~~-~~-------~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~- 133 (394)
T PRK08651 63 RPNLIARR-GS-------GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG- 133 (394)
T ss_pred cceEEEEe-CC-------CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC-
Confidence 56788764 32 148999999999997631 135688899999999999999986531
Q ss_pred CCCCCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
+++|.|++..+||.|..|+++++++.
T Consensus 134 ------~~~v~~~~~~~EE~g~~G~~~~~~~~ 159 (394)
T PRK08651 134 ------DGNIELAIVPDEETGGTGTGYLVEEG 159 (394)
T ss_pred ------CCCEEEEEecCccccchhHHHHHhcc
Confidence 57899999999999889999999864
No 63
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=97.55 E-value=0.00037 Score=71.40 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=71.0
Q ss_pred eEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC---------------------C------CCCCCCCCchhHHHHHHHH
Q 014338 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGAA---------------------P------ALSVGSDSNGSGVVALLEV 254 (426)
Q Consensus 202 NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~---------------------p------~~~~GAddn~SG~a~LLEl 254 (426)
||++++.+. +.++|++.+|+|+.+.. + -+..|+.|.-+|++++|.+
T Consensus 42 nvva~~~~~-------~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a 114 (373)
T TIGR01900 42 NVLARTDFG-------KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHL 114 (373)
T ss_pred EEEEecCCC-------CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHH
Confidence 899997531 25789999999998642 0 1456888999999999999
Q ss_pred HHHHHhccCCCCCCCcceEEEEEeCCCCCC--CcchHHHHHhccHhhhcCeeEEEEec
Q 014338 255 ARLFSLLYSNPKTRGRYNILFGLTSGGPYN--YNGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 255 ar~~~~l~~~~~~~p~~~I~F~~~~gEe~g--~~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
++.|..... +..++.+|.|++..+||.+ ..|++.+++.... ..+..++|+.+
T Consensus 115 ~~~l~~~~~--~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~--~~~~d~~iv~E 168 (373)
T TIGR01900 115 AATLDGRAP--ETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPD--WLAADFAIIGE 168 (373)
T ss_pred HHHHhhhcc--ccCCCCCEEEEEEecccccCCCCCHHHHHHhCcc--cccCCEEEEEC
Confidence 999964321 1245779999999999975 3699999886421 12345666654
No 64
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=97.53 E-value=0.00035 Score=70.28 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=68.8
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcce
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~ 272 (426)
.|+++.. |. ..|.|++.+|+|+.+.. .-+..|+.|+-+|++++|+..+.|.+. ..+
T Consensus 40 ~~~~~~~-~~-------~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~--------~~~ 103 (336)
T TIGR01902 40 GNFILGK-GD-------GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK--------GIK 103 (336)
T ss_pred CcEEEEe-CC-------CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC--------CCc
Confidence 4777754 31 25899999999998642 135679999999999999999999753 247
Q ss_pred EEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccc
Q 014338 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (426)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~i 312 (426)
|+|+++..||.|..|++.++++... .++|+.|--
T Consensus 104 i~~~~~~dEE~g~~G~~~~~~~~~~------~~~ii~ept 137 (336)
T TIGR01902 104 VIVSGLVDEESSSKGAREVIDKNYP------FYVIVGEPS 137 (336)
T ss_pred EEEEEEeCcccCCccHHHHHhhcCC------CEEEEecCC
Confidence 9999999999999999999987421 255665543
No 65
>PRK08554 peptidase; Reviewed
Probab=97.49 E-value=0.00058 Score=71.69 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=72.1
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------------CCCCCCCCchhHHHHHHHHHHHHHhccCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------------ALSVGSDSNGSGVVALLEVARLFSLLYSN 264 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p----------------~~~~GAddn~SG~a~LLElar~~~~l~~~ 264 (426)
.|+++.+ |. ..+.|++.+|+|+++..+ -+..|+.|+-+|++++|..++.|.+.
T Consensus 53 ~~l~~~~-~~-------~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--- 121 (438)
T PRK08554 53 YAVYGEI-GE-------GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--- 121 (438)
T ss_pred eEEEEEe-CC-------CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc---
Confidence 6888886 32 146899999999987531 25689999999999999999999763
Q ss_pred CCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccc
Q 014338 265 PKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (426)
Q Consensus 265 ~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~i 312 (426)
.++++|.|++...||.|-.|+.++++.+... .....++|+.|..
T Consensus 122 ---~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~-~~~~~~~iv~Ept 165 (438)
T PRK08554 122 ---PLNGKVIFAFTGDEEIGGAMAMHIAEKLREE-GKLPKYMINADGI 165 (438)
T ss_pred ---CCCCCEEEEEEcccccCccccHHHHHHHHhc-CCCCCEEEEeCCC
Confidence 1467899999999999877777776654211 1334677777753
No 66
>PLN02280 IAA-amino acid hydrolase
Probab=97.43 E-value=0.00078 Score=71.60 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=64.0
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~ 268 (426)
..||+|++ |.+ ..|+|++.+|+|+++... +..+|.+.++ +++++|.++++|.+.. ..
T Consensus 140 ~~~vva~~-g~~------~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~----~~ 207 (478)
T PLN02280 140 KTGIRAWI-GTG------GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSRE----HL 207 (478)
T ss_pred CCEEEEEE-CCC------CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhcc----cc
Confidence 46999998 543 248999999999998621 2334666677 9999999999998653 13
Q ss_pred CcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 269 GRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 269 p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
++.+|.|++..+||.|. |+++++++
T Consensus 208 ~~g~V~~if~pdEE~g~-Ga~~li~~ 232 (478)
T PLN02280 208 LKGTVVLLFQPAEEAGN-GAKRMIGD 232 (478)
T ss_pred CCceEEEEecccccccc-hHHHHHHC
Confidence 46689999999999875 99999886
No 67
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.42 E-value=0.00042 Score=73.26 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=62.2
Q ss_pred CCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCC
Q 014338 219 LPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPY 283 (426)
Q Consensus 219 ~~~Ivi~AHyDs~g~~------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~ 283 (426)
.++|++.+|+|+.+.. | -+..|+.|+-.|++++|..+++|.+.. ..++++|.|++...||.
T Consensus 78 ~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~----~~~~~~i~~~~~~dEE~ 153 (466)
T TIGR01886 78 DERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG----LPPSKKIRFVVGTNEET 153 (466)
T ss_pred CCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC----CCCCCCEEEEEECcccc
Confidence 5799999999998752 1 247799999999999999999997653 35678999999999999
Q ss_pred CCcchHHHHHhc
Q 014338 284 NYNGTHKWLRSF 295 (426)
Q Consensus 284 g~~GS~~~v~~~ 295 (426)
|..|+++|+++.
T Consensus 154 g~~g~~~~~~~~ 165 (466)
T TIGR01886 154 GWVDMDYYFKHE 165 (466)
T ss_pred CcccHHHHHhcC
Confidence 999999999864
No 68
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00082 Score=69.45 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=82.3
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLL 261 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------------~~~~GAddn~SG~a~LLElar~~~~l 261 (426)
...|+++++.|... .|.|++.+|+|+.+..+ -+..|+.|+=.++++.+.+++.|...
T Consensus 61 ~~~n~~~~~~~~~~------~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~ 134 (409)
T COG0624 61 GRPNLVARLGGGDG------GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA 134 (409)
T ss_pred CceEEEEEecCCCC------CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh
Confidence 45699999988642 39999999999998742 25679999999999999999999885
Q ss_pred cCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEecc
Q 014338 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (426)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~ 311 (426)
. ..++.+|.|++...||.|-.|.++|+++.......+..++|..+.
T Consensus 135 ~----~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 135 G----GELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred C----CCCCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 3 245799999999999999999999999865322345566777775
No 69
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.003 Score=64.49 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=102.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCCC
Q 014338 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNN 317 (426)
Q Consensus 238 ~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~~ 317 (426)
..=|-||=.|+++|||++|.|. . ..++.++.|+++..||.|+.|++....+..+ ..+|.+|..+.++.
T Consensus 175 ~skalDdR~gva~lle~lk~l~-~-----~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~p------d~aiavd~~~~~d~ 242 (355)
T COG1363 175 VSKALDDRAGVAALLELLKELK-G-----IELPADVYFVASVQEEVGLRGAKTSAFRIKP------DIAIAVDVTPAGDT 242 (355)
T ss_pred EeeeccchHhHHHHHHHHHHhc-c-----CCCCceEEEEEecchhhccchhhccccccCC------CEEEEEecccccCC
Confidence 4456799999999999999994 2 1357889999999999999999988877543 36666666665421
Q ss_pred -------------c-eeEEecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhc--CCCeEEEE
Q 014338 318 -------------E-LWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSR--LRVTAATL 381 (426)
Q Consensus 318 -------------~-l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~--~gIPa~tl 381 (426)
. +-+.-...+.+ ..+.+.|.++|++.+++++..-.. ...+|-..+.. .|||+.++
T Consensus 243 ~~~~~~~~~lg~Gp~i~~~D~~~~~~---~~l~~~L~~~A~~~~Ip~Q~~v~~------~ggTDA~a~~~~g~gvpta~I 313 (355)
T COG1363 243 PGVPKGDVKLGKGPVIRVKDASGIYH---PKLRKFLLELAEKNNIPYQVDVSP------GGGTDAGAAHLTGGGVPTALI 313 (355)
T ss_pred CCCcccccccCCCCEEEEEcCCCCCC---HHHHHHHHHHHHHcCCCeEEEecC------CCCccHHHHHHcCCCCceEEE
Confidence 0 11110111112 356666777899988888764221 12445444444 57999999
Q ss_pred eecCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 014338 382 SELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLAV 422 (426)
Q Consensus 382 s~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae~la~ 422 (426)
+-- . +| -||+. +-++.+.+....+++.+.+.+
T Consensus 314 gip-~--ry---~Hs~~---e~~~~~D~~~~~~Ll~~~i~~ 345 (355)
T COG1363 314 GIP-T--RY---IHSPV---EVAHLDDLEATVKLLVAYLES 345 (355)
T ss_pred ecc-c--cc---ccCcc---eeecHHHHHHHHHHHHHHHHh
Confidence 842 2 23 24544 457778888888887776654
No 70
>PRK09961 exoaminopeptidase; Provisional
Probab=97.39 E-value=0.0019 Score=65.84 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=100.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCCC-
Q 014338 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN- 316 (426)
Q Consensus 238 ~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~~- 316 (426)
..-|-||-.|+++++|++|.+++. .++.+|.|+++..||.|+.|++.-.....+ ..+|.+|..-..+
T Consensus 161 ~gkalDnR~g~~~lle~l~~l~~~------~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p------d~~I~vDv~~~~d~ 228 (344)
T PRK09961 161 MGKAFDDRLGCYLLVTLLRELHDA------ELPAEVWLVASSSEEVGLRGGQTATRAVSP------DVAIVLDTACWAKN 228 (344)
T ss_pred EEeechhhHhHHHHHHHHHHhhhc------CCCceEEEEEEcccccchHHHHHHHhccCC------CEEEEEeccCCCCC
Confidence 345779999999999999998643 257899999999999999999988776432 4677787664321
Q ss_pred -Ccee---EEecCCC-------cchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhh--hcCCCeEEEEee
Q 014338 317 -NELW---IHVSKPP-------ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQF--SRLRVTAATLSE 383 (426)
Q Consensus 317 -~~l~---~hvs~~p-------~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F--~~~gIPa~tls~ 383 (426)
+.-. ...++-| ....-..+.+.+.++|++.+++++..... ...+|--.| +..|+|++.++-
T Consensus 229 ~~~~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~------ggGTDa~~~~~~~~Giptv~ig~ 302 (344)
T PRK09961 229 FDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQADMFS------NGGTDGGAVHLTGTGVPTVVMGP 302 (344)
T ss_pred CCCCCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEEEecC------CCcchHHHHHHhCCCCCEEEech
Confidence 0000 0111111 00011366677778888888776652110 112444444 448999999964
Q ss_pred cCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 014338 384 LSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAESLA 421 (426)
Q Consensus 384 ~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae~la 421 (426)
+. .| -||+. +.++.+.+.+.++++.+.+.
T Consensus 303 -p~--ry---~Hs~~---E~v~~~D~~~~~~Ll~~~i~ 331 (344)
T PRK09961 303 -AT--RH---GHCAA---SIADCRDILQMIQLLSALIQ 331 (344)
T ss_pred -hh--hc---ccChh---heEEHHHHHHHHHHHHHHHH
Confidence 22 12 24544 67888888888888877663
No 71
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=97.36 E-value=0.00096 Score=67.86 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=63.3
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
.|++++. |. ..|+|++.+|+|+.+..+ -+..|+.|+=.|++++|..++.+.+..
T Consensus 45 ~~~~~~~-g~-------~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~- 115 (370)
T TIGR01246 45 KNLWATR-GT-------GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKN- 115 (370)
T ss_pred ceEEEEe-cC-------CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhc-
Confidence 5899975 32 258999999999987631 245677788889999999988876653
Q ss_pred CCCCCCcceEEEEEeCCCCCC-CcchHHHHHh
Q 014338 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g-~~GS~~~v~~ 294 (426)
.+++.+|.|++..+||.+ ..|++.+++.
T Consensus 116 ---~~~~~~v~~~~~~dEE~~~~~G~~~~~~~ 144 (370)
T TIGR01246 116 ---PDHKGSISLLITSDEEGTAIDGTKKVVET 144 (370)
T ss_pred ---CCCCCcEEEEEEeccccCCCcCHHHHHHH
Confidence 235679999999999975 4699998864
No 72
>PLN02693 IAA-amino acid hydrolase
Probab=97.35 E-value=0.0011 Score=69.66 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=62.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p-----------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~ 268 (426)
..||+|++ |.+ +.|.|++.||+|+.+... +..+|.+-+| +++++|.+++.|.+... .
T Consensus 90 ~~~via~~-g~~------~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg-~~A~~l~Aa~~L~~~~~----~ 157 (437)
T PLN02693 90 ITGIIGYI-GTG------EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDG-HVAMLLGAAKILQEHRH----H 157 (437)
T ss_pred CcEEEEEE-CCC------CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchH-HHHHHHHHHHHHHhCcc----c
Confidence 47999998 322 258999999999998521 2223555555 89999999999987642 2
Q ss_pred CcceEEEEEeCCCCCCCcchHHHHHh
Q 014338 269 GRYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 269 p~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
.+.+|.|++..+|| +..|++.++++
T Consensus 158 ~~g~V~~if~pdEE-~~~Ga~~~i~~ 182 (437)
T PLN02693 158 LQGTVVLIFQPAEE-GLSGAKKMREE 182 (437)
T ss_pred CCceEEEEEEEccc-chhhHHHHHHC
Confidence 35689999999999 55799999876
No 73
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=97.34 E-value=0.00076 Score=71.83 Aligned_cols=96 Identities=18% Similarity=0.080 Sum_probs=69.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-----------C---------CCCCCC---CCchhHHHHHHHHHHH
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-----------P---------ALSVGS---DSNGSGVVALLEVARL 257 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-----------p---------~~~~GA---ddn~SG~a~LLElar~ 257 (426)
.|++++.+++... +..|.|++.+|+|++... | -++.|+ .|++.|++++|.+.+
T Consensus 53 gnvi~~~~~~~g~---~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~- 128 (485)
T PRK15026 53 GNILIRKPATAGM---ENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA- 128 (485)
T ss_pred CeEEEEEcCCCCC---CCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH-
Confidence 5899988764311 236889999999999652 1 134677 499999999887652
Q ss_pred HHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccc
Q 014338 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (426)
Q Consensus 258 ~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~i 312 (426)
... .+...|.|+++..||.|..|++++... ..+..++||+|.-
T Consensus 129 --~~~-----~~~~~i~~l~t~dEE~G~~ga~~l~~~-----~~~~~~~i~~e~~ 171 (485)
T PRK15026 129 --DEN-----VVHGPLEVLLTMTEEAGMDGAFGLQSN-----WLQADILINTDSE 171 (485)
T ss_pred --hCC-----CCCCCEEEEEEcccccCcHhHHHhhhc-----cCCcCEEEEeCCC
Confidence 211 135679999999999999999998543 2346788888875
No 74
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.32 E-value=0.00061 Score=71.90 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=67.0
Q ss_pred eEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCC
Q 014338 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (426)
Q Consensus 202 NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~~~ 266 (426)
|+++++.+.+ ..+.|++.+|+|+++.. | -+..|+.|+-+|+++++...+.|.+..
T Consensus 68 n~~~~~~~~~------~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g---- 137 (466)
T PRK07318 68 NYAGHIEYGE------GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELG---- 137 (466)
T ss_pred CccceEEECC------CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcC----
Confidence 6666665311 25789999999999751 1 256799999999999999999998753
Q ss_pred CCCcceEEEEEeCCCCCCCcchHHHHHhc
Q 014338 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 267 ~~p~~~I~F~~~~gEe~g~~GS~~~v~~~ 295 (426)
.+++.+|.|+++..||.|..|++++++..
T Consensus 138 ~~~~~~i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 138 LPLSKKVRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred CCCCccEEEEEEcccccCchhHHHHHHhC
Confidence 34567899999999999999999999864
No 75
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=97.32 E-value=0.00059 Score=68.95 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=56.3
Q ss_pred CEEEEEecCCCCCC-CC-------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHH
Q 014338 220 PTIAIVASYDTFGA-AP-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKW 291 (426)
Q Consensus 220 ~~Ivi~AHyDs~g~-~p-------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ 291 (426)
+.|++.+|+|+++. ++ -+..|+.|+-.|++++|..++.|.+.. .+|.|+++.+||.|..|++++
T Consensus 61 ~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~--------~~i~~~~~~dEE~g~~G~~~l 132 (346)
T PRK00466 61 GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG--------IKVMVSGLADEESTSIGAKEL 132 (346)
T ss_pred CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC--------CCEEEEEEcCcccCCccHHHH
Confidence 46999999999975 11 256899999999999999999997642 358999999999998999999
Q ss_pred HHh
Q 014338 292 LRS 294 (426)
Q Consensus 292 v~~ 294 (426)
+++
T Consensus 133 ~~~ 135 (346)
T PRK00466 133 VSK 135 (346)
T ss_pred Hhc
Confidence 986
No 76
>PRK07205 hypothetical protein; Provisional
Probab=97.32 E-value=0.00086 Score=70.25 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=61.6
Q ss_pred CCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCC
Q 014338 219 LPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGG 281 (426)
Q Consensus 219 ~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gE 281 (426)
.|.|++.+|+|+++.. | -+..|+.|+=.|++++|...+.|.+.. ..++++|.|++.+.|
T Consensus 75 ~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~----~~~~~~i~l~~~~dE 150 (444)
T PRK07205 75 EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAG----VQFNKRIRFIFGTDE 150 (444)
T ss_pred CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC----CCCCCcEEEEEECCc
Confidence 4789999999999762 1 256799999999999999999998763 356789999999999
Q ss_pred CCCCcchHHHHHh
Q 014338 282 PYNYNGTHKWLRS 294 (426)
Q Consensus 282 e~g~~GS~~~v~~ 294 (426)
|.|..|+++|++.
T Consensus 151 E~g~~g~~~~~~~ 163 (444)
T PRK07205 151 ETLWRCMNRYNEV 163 (444)
T ss_pred ccCcccHHHHHhC
Confidence 9999999999974
No 77
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=97.23 E-value=0.0052 Score=62.66 Aligned_cols=149 Identities=9% Similarity=0.033 Sum_probs=94.4
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCeeEEEEeccccCC-----
Q 014338 241 SDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSW----- 315 (426)
Q Consensus 241 Addn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~~vinlD~iG~~----- 315 (426)
+-||=.|+++++++++.|.+.. .+++++|.|+++..||.| .|+.+ ... .++.-+|.+|+....
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~----~~~~~~v~~~~t~qEEvG-~gaa~---~i~----pd~a~~i~vd~~~~~p~~~~ 248 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHK----VPLPVDVHPLFTITEEVG-SGASH---ALP----PDVAELVSVDNGTVAPGQNS 248 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcC----CCCCceEEEEEECCcccC-ccchh---ccc----HhhhccEEEEecccCCCCCc
Confidence 3789999999999999998653 346789999999999999 56422 111 122333555533211
Q ss_pred -C-C-ceeEEecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCCCc--chhhhhcCCCeEEEEeecCCCCCc
Q 014338 316 -N-N-ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVAW--EHEQFSRLRVTAATLSELSAAPEL 390 (426)
Q Consensus 316 -~-~-~l~~hvs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~--dHe~F~~~gIPa~tls~~~~~~~~ 390 (426)
+ + .+.+.-+.++.+ .++.+.+.++|++.+++++..... ...+ +.-.++..|+|+..++- +. .
T Consensus 249 lg~Gp~i~~~d~~~~~~---~~l~~~l~~~A~~~~Ip~Q~~~~~------~~gtDa~~~~~~~~Gi~t~~i~i-P~--R- 315 (343)
T TIGR03106 249 SEHGVTIAMADSSGPFD---YHLTRKLIRLCQDHGIPHRRDVFR------YYRSDAASAVEAGHDIRTALVTF-GL--D- 315 (343)
T ss_pred CCCCceEEEecCCCCCC---HHHHHHHHHHHHHcCCCcEEEecC------CCCChHHHHHHcCCCCCEEEeec-cc--c-
Confidence 0 1 221222223333 366777788899888888763211 1122 34456678999999974 22 1
Q ss_pred cccCCCCCCCcCCCCHHHHHHHHHHHHHHH
Q 014338 391 LESTGGLLDSRHFVDETSFIRSVKLVAESL 420 (426)
Q Consensus 391 ~~~~~s~~Dt~d~ld~~~L~~~~~~iae~l 420 (426)
+.|| .+.++.+.+...++++.+.+
T Consensus 316 --y~Hs----~e~~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 316 --ASHG----YERTHIDALEALANLLVAYA 339 (343)
T ss_pred --chhh----hhhccHHHHHHHHHHHHHHh
Confidence 2355 47789999999999888766
No 78
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=97.21 E-value=0.0012 Score=69.46 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred CCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCC
Q 014338 219 LPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPY 283 (426)
Q Consensus 219 ~~~Ivi~AHyDs~g~~------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~ 283 (426)
.|.|++.+|+|+.+.. | -+..|+.|.-.|++++|..++.|.+.. ..++++|.|+++..||.
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~----~~~~~~i~~~~~~dEE~ 142 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELG----LKLKKKIRFIFGTDEET 142 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC----CCCCCcEEEEEECCccc
Confidence 4789999999999752 1 256789999999999999999998753 34678999999999999
Q ss_pred CCcchHHHHHh
Q 014338 284 NYNGTHKWLRS 294 (426)
Q Consensus 284 g~~GS~~~v~~ 294 (426)
|..|+++|+++
T Consensus 143 g~~g~~~~l~~ 153 (447)
T TIGR01887 143 GWACIDYYFEH 153 (447)
T ss_pred CcHhHHHHHHh
Confidence 99999999976
No 79
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=96.82 E-value=0.0055 Score=63.10 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=62.2
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
.|+++.+ |.+ .++|++.+|+|+.+.. | -+..|+.|+=.|++++|.+++.|.+..
T Consensus 57 ~~v~~~~-g~~-------~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~- 127 (395)
T TIGR03526 57 GNVLGYI-GHG-------PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLG- 127 (395)
T ss_pred CcEEEEe-CCC-------CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcC-
Confidence 4899987 422 4789999999999852 1 135799999999999999999998753
Q ss_pred CCCCCCcceEEEEEeCCCC-CCCcchHHHHHh
Q 014338 264 NPKTRGRYNILFGLTSGGP-YNYNGTHKWLRS 294 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe-~g~~GS~~~v~~ 294 (426)
..++.++.|++..+|| .+-.|+++++++
T Consensus 128 ---~~~~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 128 ---LLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ---CCCCceEEEEEecccccCCcHhHHHHHhc
Confidence 2356789999888888 344467777754
No 80
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=96.78 E-value=0.008 Score=61.86 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=60.9
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~ 263 (426)
.|++|++ |.. .|+|++.+|+|+.+.. | -+..|+.|+-.|++++|..++.|.+..
T Consensus 57 ~n~~~~~-g~~-------~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g- 127 (395)
T TIGR03320 57 GNVLGYI-GHG-------PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLG- 127 (395)
T ss_pred CCEEEEe-CCC-------CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcC-
Confidence 4899987 422 4789999999998752 1 136799999999999999999998753
Q ss_pred CCCCCCcceEEEEEeCCCCCC-CcchHHHHHh
Q 014338 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (426)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g-~~GS~~~v~~ 294 (426)
..++.+|.|++..+||.+ -.|++.++++
T Consensus 128 ---~~~~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 128 ---LLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ---CCCCceEEEEecccccccCchHHHHHHHh
Confidence 235678999888888853 2345566653
No 81
>PRK08737 acetylornithine deacetylase; Provisional
Probab=96.31 E-value=0.012 Score=60.27 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=57.8
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCC
Q 014338 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSN 264 (426)
Q Consensus 200 ~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~ 264 (426)
..|+++. .| .|.|++.+|+|+.+.. | -+..|+.|-=+|++++|.+++.+
T Consensus 54 ~~nli~~-~g---------~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~~------ 117 (364)
T PRK08737 54 AVSLYAV-RG---------TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANAG------ 117 (364)
T ss_pred ceEEEEE-cC---------CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHcc------
Confidence 4688885 23 2579999999998752 1 15569999888999999998641
Q ss_pred CCCCCcceEEEEEeCCCCCCC-cchHHHHHh
Q 014338 265 PKTRGRYNILFGLTSGGPYNY-NGTHKWLRS 294 (426)
Q Consensus 265 ~~~~p~~~I~F~~~~gEe~g~-~GS~~~v~~ 294 (426)
..+|.|+++..||.|- .|++++++.
T Consensus 118 -----~~~v~~~~~~dEE~g~~~g~~~~~~~ 143 (364)
T PRK08737 118 -----DGDAAFLFSSDEEANDPRCVAAFLAR 143 (364)
T ss_pred -----CCCEEEEEEcccccCchhhHHHHHHh
Confidence 3479999999999886 799999876
No 82
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=96.17 E-value=0.052 Score=56.43 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=83.3
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-----------C--------------------------C-CCCC
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-----------P--------------------------A-LSVG 240 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-----------p--------------------------~-~~~G 240 (426)
.-.||.+-++|.+ .+.+||+.+|||++++. | | ..-|
T Consensus 64 gR~nv~AlVrg~~------~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRG 137 (553)
T COG4187 64 GRRNVFALVRGGT------SKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRG 137 (553)
T ss_pred ccceeEEEEecCC------CCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCC
Confidence 5789999999943 47899999999999872 1 2 3559
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccH---hhhcCeeEEEEeccccCC
Q 014338 241 SDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ---RLRESIDYAICLNSVGSW 315 (426)
Q Consensus 241 Addn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~---~~~~~i~~vinlD~iG~~ 315 (426)
+-|=-||.++-|.....|++-. .-.-||+|+...-||..-.|.+.-+..+.. ...-...++||+|-++..
T Consensus 138 a~DMKsGlav~la~L~~fa~~~-----~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~ 210 (553)
T COG4187 138 ALDMKSGLAVHLACLEEFAART-----DRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQ 210 (553)
T ss_pred chhhhhhhHHHHHHHHHHhhCC-----CCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCC
Confidence 9999999999999888888752 236699999999999999998888776442 112246689999998764
No 83
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=2.7 Score=45.33 Aligned_cols=79 Identities=29% Similarity=0.445 Sum_probs=61.3
Q ss_pred CCCCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEE
Q 014338 196 ASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILF 275 (426)
Q Consensus 196 ~~~~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F 275 (426)
+.....||+|.|++-.. | ..+-||++.-|+... |. |--|++.++.+|+.|++..- | .++|+|
T Consensus 116 e~y~G~NvyGilRAPRg--d--gtEsivl~vP~~~~~-------~~--~~~~v~l~lsla~~f~r~~y---W--sKDII~ 177 (617)
T KOG3566|consen 116 EEYSGENVYGILRAPRG--D--GTESIVLVVPYGRSS-------GS--NSASVALLLSLADYFSRWVY---W--SKDIIF 177 (617)
T ss_pred hhcCCceEEEEEecCCC--C--CcceEEEEEecccCC-------Cc--chhHHHHHHHHHHHhcCCee---e--cccEEE
Confidence 34448999999987442 2 368899999999763 22 46688999999999988642 3 679999
Q ss_pred EEeCCCCCCCcchHHHHHhc
Q 014338 276 GLTSGGPYNYNGTHKWLRSF 295 (426)
Q Consensus 276 ~~~~gEe~g~~GS~~~v~~~ 295 (426)
+++++ .+.|.+.|++.+
T Consensus 178 v~~d~---~~~g~~AwLeaY 194 (617)
T KOG3566|consen 178 VFTDG---PALGLDAWLEAY 194 (617)
T ss_pred EEeCC---ccccHHHHHHHh
Confidence 99997 788999999974
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=91.44 E-value=1.5 Score=45.65 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=62.2
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-----------CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCC
Q 014338 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-----------PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRG 269 (426)
Q Consensus 201 ~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~~-----------p~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p 269 (426)
+=|+|.++|.+ +.|+|.+-|-||..++- |+..++..=|+ -++++|-.|+.|++... ..
T Consensus 57 TGvva~~~~g~------~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~-Hta~lLgaA~~L~~~~~----~~ 125 (392)
T COG1473 57 TGVVATLKGGK------PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDG-HTAILLGAALALAEHKD----NL 125 (392)
T ss_pred eEEEEEEcCCC------CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchH-HHHHHHHHHHHHHhhhh----hC
Confidence 45889998765 35699999999999861 22233333333 47888999999998742 34
Q ss_pred cceEEEEEeCCCCCCCcchHHHHHh
Q 014338 270 RYNILFGLTSGGPYNYNGTHKWLRS 294 (426)
Q Consensus 270 ~~~I~F~~~~gEe~g~~GS~~~v~~ 294 (426)
+-+|.|+|-.+||.+- |.+.++++
T Consensus 126 ~Gtv~~ifQPAEE~~~-Ga~~mi~~ 149 (392)
T COG1473 126 PGTVRLIFQPAEEGGG-GAKAMIED 149 (392)
T ss_pred CcEEEEEecccccccc-cHHHHHhc
Confidence 6789999999999877 99999987
No 85
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=87.64 E-value=2.6 Score=43.79 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCC
Q 014338 218 QLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (426)
Q Consensus 218 ~~~~Ivi~AHyDs~g~~--------p---------~~~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~g 280 (426)
.+++|++..|||-.+.. | -..-|+.||---++.-.++.++|.++. ...+-||+|++=+.
T Consensus 90 ~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g----~~lpvnv~f~~Egm 165 (473)
T KOG2276|consen 90 SKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLG----IDLPVNVVFVFEGM 165 (473)
T ss_pred CcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhC----ccccceEEEEEEec
Confidence 57899999999987763 1 146699999888999999999999875 24588999999999
Q ss_pred CCCCCcchHHHHHhccHhhhcCeeEEEEec
Q 014338 281 GPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (426)
Q Consensus 281 Ee~g~~GS~~~v~~~~~~~~~~i~~vinlD 310 (426)
||.|-.|-...++.........+.++.--|
T Consensus 166 EEsgS~~L~~l~~~~kD~~~~~vD~vciSd 195 (473)
T KOG2276|consen 166 EESGSEGLDELIEKEKDKFFKDVDFVCISD 195 (473)
T ss_pred hhccCccHHHHHHHHhhhhhccCCEEEeeC
Confidence 999999999998864433344555554434
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=84.90 E-value=4.4 Score=43.12 Aligned_cols=162 Identities=7% Similarity=-0.009 Sum_probs=88.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHH----hccHhhhcC-----------
Q 014338 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR----SFDQRLRES----------- 302 (426)
Q Consensus 238 ~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~----~~~~~~~~~----------- 302 (426)
+.++-||=.|+.+++|..+... .+...+++++|+-||.|..|.+.-.. +.-.+....
T Consensus 255 ~s~rLDNr~~~~~~leal~~~~--------~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~pd~~~~~~~ 326 (462)
T PRK02256 255 GAYGQDDRVCAYTSLEALLELE--------NPEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTEGNYSDLKLR 326 (462)
T ss_pred eccccccHHHHHHHHHHHHhcc--------cCCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcCCCcchHHHH
Confidence 5677899999999999998653 13568899999999998876654432 111100111
Q ss_pred ----eeEEEEeccccCCC-------C---ceeEE-------ec---CC-CcchHHHHHHHHHHHHHHHhCceeccc-ccc
Q 014338 303 ----IDYAICLNSVGSWN-------N---ELWIH-------VS---KP-PENAYIKQIFEGFTNVAEELGFKVGLK-HKK 356 (426)
Q Consensus 303 ----i~~vinlD~iG~~~-------~---~l~~h-------vs---~~-p~~~~~~~~~~~l~~~a~~~~~~~~~~-~~k 356 (426)
-.++|.+|+.-..+ + ...+. .. .. .....-..+...+.++|++.+++++.. ..+
T Consensus 327 ~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~~~Ip~Q~~~~~r 406 (462)
T PRK02256 327 RALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNKNNVVWQTAELGK 406 (462)
T ss_pred HHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 12888899773321 0 01111 10 00 000002345566777788888888862 222
Q ss_pred ccCCCCCCCcchhhhhcCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHH
Q 014338 357 INISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAE 418 (426)
Q Consensus 357 i~~~~~~~~~dHe~F~~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae 418 (426)
.+.. .-..+.-..++.|||++.++- +- +.-||+.-+... +.+...++++.+
T Consensus 407 ~d~~--~GgTig~~~s~~Gi~tvdiGi-P~-----l~MHS~rE~~~~---~D~~~~~~ll~~ 457 (462)
T PRK02256 407 VDQG--GGGTIAKFLANYGMEVIDCGV-AL-----LSMHSPFEIASK---ADIYETYKAYKA 457 (462)
T ss_pred CCCC--CcChHHHHHcCCCCcEEEech-hh-----hccccHHHHhhH---HHHHHHHHHHHH
Confidence 1110 112343334567999999874 11 123577655444 444444444444
No 87
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=80.70 E-value=13 Score=39.72 Aligned_cols=166 Identities=9% Similarity=-0.024 Sum_probs=95.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHHhccHhhhcCee-------------
Q 014338 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESID------------- 304 (426)
Q Consensus 238 ~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~~~~~~~~~~i~------------- 304 (426)
..++-||=.|+.++||..+....... ..+....++++|+-||.|..|.+.-...+.+..+++|.
T Consensus 246 ~s~rlDnr~~~~~~l~al~~~~~~~~---~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~ 322 (465)
T PTZ00371 246 SSPRLDNLGSSFCAFKALTEAVESLG---ENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDS 322 (465)
T ss_pred EEecchhHHHHHHHHHHHHhcccccc---CCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhH
Confidence 45677899999999999887542100 11344555666999999998887665544332222222
Q ss_pred --------EEEEeccccCCC-------C---ceeEE------e--cCCC-cchHHHHHHHHHHHHHHHhCceeccccccc
Q 014338 305 --------YAICLNSVGSWN-------N---ELWIH------V--SKPP-ENAYIKQIFEGFTNVAEELGFKVGLKHKKI 357 (426)
Q Consensus 305 --------~vinlD~iG~~~-------~---~l~~h------v--s~~p-~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki 357 (426)
++|.+|+.-..+ + ...+. . ...+ .+ ..+...+.++|++.+++++....+.
T Consensus 323 ~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td---~~~~a~i~~la~~~~Ip~Q~~~~~~ 399 (465)
T PTZ00371 323 FAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATN---GVTASLLKAIAKKANIPIQEFVVKN 399 (465)
T ss_pred HHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccC---HHHHHHHHHHHHHcCCCEEEEEecC
Confidence 788899864310 0 01111 1 1111 13 3445556667888888888643221
Q ss_pred cCCCCCCCcchhhh--hcCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHHHHHHH
Q 014338 358 NISNPRVAWEHEQF--SRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSVKLVAE 418 (426)
Q Consensus 358 ~~~~~~~~~dHe~F--~~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~~~iae 418 (426)
+....++--++ +..|||++.++- +- +.-||+.-+...-|...+.+..+...+
T Consensus 400 ---d~~~GsTig~i~~s~~Gi~tvDiGi-P~-----l~MHS~rE~~~~~D~~~~~~l~~af~~ 453 (465)
T PTZ00371 400 ---DSPCGSTIGPILSSNLGIRTVDIGI-PQ-----LAMHSIREMCGVVDIYYLVKLIKAFFT 453 (465)
T ss_pred ---CCCCcchHHHHHHhCCCCcEEEech-hh-----cccccHHHHccHHHHHHHHHHHHHHHH
Confidence 11123333334 357999998864 11 123688777667677666666655544
No 88
>PRK02813 putative aminopeptidase 2; Provisional
Probab=76.75 E-value=20 Score=37.81 Aligned_cols=158 Identities=12% Similarity=0.056 Sum_probs=87.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCc---chHH-HHH----hccHh---------hh
Q 014338 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYN---GTHK-WLR----SFDQR---------LR 300 (426)
Q Consensus 238 ~~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~---GS~~-~v~----~~~~~---------~~ 300 (426)
+.++-||=.|+.++||..+.... ...+++++++-||.|.. |++- |++ ..... ..
T Consensus 229 ~s~~lDnr~~~~~~l~al~~~~~---------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~ 299 (428)
T PRK02813 229 SSGRLDNLSSCHAGLEALLAAAS---------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRA 299 (428)
T ss_pred EEecchhHHHHHHHHHHHHhcCC---------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHh
Confidence 45667899999999998876531 46899999999999988 8773 222 21110 01
Q ss_pred cCeeEEEEeccccCCC-------C---ceeEE------ecCCCcchHHHHHHHHHHHHHHHhCceeccccccccCCCCCC
Q 014338 301 ESIDYAICLNSVGSWN-------N---ELWIH------VSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRV 364 (426)
Q Consensus 301 ~~i~~vinlD~iG~~~-------~---~l~~h------vs~~p~~~~~~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~ 364 (426)
-+-.++|.+|+.-..+ + ...+. .....+-..-..+...+.++|++.+++++....+ .|-..
T Consensus 300 i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~---~d~~g 376 (428)
T PRK02813 300 LARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNR---SDMPC 376 (428)
T ss_pred hCCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEec---CCCCC
Confidence 2335888899763331 0 01111 1100000011234455566788888888764322 11112
Q ss_pred Ccchhhhh--cCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHH
Q 014338 365 AWEHEQFS--RLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSV 413 (426)
Q Consensus 365 ~~dHe~F~--~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~ 413 (426)
.++--++. +.|||++.++- +- +.-||+.-+...-|...+.+-.
T Consensus 377 Gstig~i~~s~~Gi~tvdiGi-P~-----l~MHS~~E~~~~~D~~~~~~l~ 421 (428)
T PRK02813 377 GSTIGPITAARLGIRTVDVGA-PM-----LAMHSARELAGVKDHAYLIKAL 421 (428)
T ss_pred ccHHHHHHHhCCCCcEEEeCh-hh-----cccccHHHHccHHHHHHHHHHH
Confidence 44444443 57999998864 11 1236777655555555444433
No 89
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=62.74 E-value=7.4 Score=39.75 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=23.8
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~ 233 (426)
...|+++.++|.. ..+.|+++||+|+.|+
T Consensus 44 ~~Gnlia~~~g~~------~~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 44 RRGAIRATLPGRE------ATPARAVVTHLDTLGA 72 (343)
T ss_pred CCeEEEEEECCCC------CCCeEEEEEeeccccc
Confidence 4689999998843 2468999999999986
No 90
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=61.08 E-value=5.9 Score=39.52 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred eEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 014338 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (426)
Q Consensus 202 NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~ 233 (426)
||+++++|.+ ..|.|+|.||+|..|+
T Consensus 2 nvi~~~~g~~------~~~~vmi~AHmDEiG~ 27 (292)
T PF05343_consen 2 NVIARKKGKE------GGPKVMIAAHMDEIGF 27 (292)
T ss_dssp -EEEEECSSC------SSSEEEEEEE--B-EE
T ss_pred cEEEEECCCC------CCceEEEEEccceeeE
Confidence 8999999932 4789999999999986
No 91
>PRK09961 exoaminopeptidase; Provisional
Probab=60.16 E-value=7.8 Score=39.55 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.0
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~ 233 (426)
...|+++++.|.+ .|.|++.||+|+.|.
T Consensus 41 ~~Gnvi~~~~g~~-------~~~v~l~aHmDevg~ 68 (344)
T PRK09961 41 GLGSVLIRLNEST-------GPKVMICAHMDEVGF 68 (344)
T ss_pred CCCCEEEEEcCCC-------CCEEEEEeccceece
Confidence 4679999987732 468999999999986
No 92
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=57.81 E-value=74 Score=25.42 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=41.6
Q ss_pred CcccceEEEEecCCCCH-HHHHHHHhccCCceEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhccCCCCcEE
Q 014338 73 ADLSRTVVMIPVRELNI-SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVY 151 (426)
Q Consensus 73 ~~~~R~~vv~~~~~~~~-~~~~~~~~~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~~Pvy 151 (426)
.....+.||++...-++ +.+... ++.++.|+||+.+........ .........||+-
T Consensus 30 ~~~~gkIvlv~rg~~~~~~k~~~a--~~~GA~gvIi~~~~~~~~~~~--------------------~~~~~~~~~iP~v 87 (101)
T PF02225_consen 30 SDVKGKIVLVERGSCSFDDKVRNA--QKAGAKGVIIYNPPPNNGSMI--------------------DSEDPDPIDIPVV 87 (101)
T ss_dssp STCTTSEEEEESTSSCHHHHHHHH--HHTTESEEEEE-TSCSCTTTT--------------------CEBTTTSTBSEEE
T ss_pred ccccceEEEEecCCCCHHHHHHHH--HHcCCEEEEEEeCCccccCcc--------------------cccCCCCcEEEEE
Confidence 56777888887777663 233222 456899999998222111000 0123456789999
Q ss_pred EeeChhHHHHHHHH
Q 014338 152 FAFENDEIDAVLDD 165 (426)
Q Consensus 152 f~~~~~~~~~i~~~ 165 (426)
++.+ ++.+.|++.
T Consensus 88 ~I~~-~~g~~L~~~ 100 (101)
T PF02225_consen 88 FISY-EDGEALLAY 100 (101)
T ss_dssp EE-H-HHHHHHHHH
T ss_pred EeCH-HHHhhhhcc
Confidence 9976 578887764
No 93
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=51.38 E-value=13 Score=38.13 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=23.3
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~ 233 (426)
..-||+|.++|... ..|.|++.||+|+.|+
T Consensus 39 ~~GNvia~~~g~~~-----~~~~vml~AHmDeVGf 68 (350)
T TIGR03107 39 GLGGIFGIKESQVE-----NAPRVMVAAHMDEVGF 68 (350)
T ss_pred CCCCEEEEecCCCC-----CCCEEEEEecccEeCE
Confidence 45799999877411 2469999999999986
No 94
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=51.03 E-value=13 Score=38.38 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.7
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~ 233 (426)
..-|++++++|.+ ..+.|+|+||+|..|.
T Consensus 43 ~lGnlia~~~g~~------g~~~imi~AHmDEiG~ 71 (355)
T COG1363 43 RLGNLIAKKGGKN------GPPKVMIAAHMDEIGF 71 (355)
T ss_pred CCCcEEEEecCCC------CCccEEEEeecceeee
Confidence 4679999999943 2466999999999986
No 95
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=47.80 E-value=52 Score=28.91 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=43.8
Q ss_pred eEEEEec-CCCCHHHHHHHHhccCCceEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhccCC-CCcEEEeeC
Q 014338 78 TVVMIPV-RELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKL-PYPVYFAFE 155 (426)
Q Consensus 78 ~~vv~~~-~~~~~~~~~~~~~~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~-~~Pvyf~~~ 155 (426)
.+++.+- .....+.+.++++. ..+.++||=+|-++..- .++.+...+.|.. .|...+ .+||+|..|
T Consensus 28 l~~i~~~~~~~~~~~l~~li~~-~~i~~iVvGlP~~~~G~-------~~~~~~~v~~f~~----~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 28 LETIPRRNREKDIEELKKLIEE-YQIDGIVVGLPLNMDGS-------ESEQARRVRKFAE----ELKKRFPGIPVILVDE 95 (135)
T ss_dssp EEEEEECCCCCCHHHHHHHHHH-CCECEEEEEEEBBCTSS-------C-CCHHHHHHHHH----HHHHHH-TSEEEEEEC
T ss_pred eEEEECCCCchHHHHHHHHHHH-hCCCEEEEeCCcccCCC-------ccHHHHHHHHHHH----HHHHhcCCCcEEEECC
Confidence 3444433 24557788888876 46888888899887631 1223333445533 334444 899999965
Q ss_pred h---hHHHHHHH
Q 014338 156 N---DEIDAVLD 164 (426)
Q Consensus 156 ~---~~~~~i~~ 164 (426)
. .++..++.
T Consensus 96 r~TT~~A~~~l~ 107 (135)
T PF03652_consen 96 RLTTKEAERRLR 107 (135)
T ss_dssp SCSHHCCHCCHH
T ss_pred ChhHHHHHHHHH
Confidence 3 24444444
No 96
>PRK08652 acetylornithine deacetylase; Provisional
Probab=47.23 E-value=69 Score=31.81 Aligned_cols=76 Identities=9% Similarity=0.031 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhcCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHHH
Q 014338 334 QIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRSV 413 (426)
Q Consensus 334 ~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~~ 413 (426)
.+.+.+.+++++.|...... . .....|-..|...|||++.+..... . ..|+.. |.++.+.|.+.+
T Consensus 270 ~lv~~l~~a~~~~g~~~~~~----~---~~g~tDa~~~~~~gip~v~~Gpg~~---~--~~H~~n---E~i~i~~l~~~~ 334 (347)
T PRK08652 270 EIVQLLEKAMKEVGLEPEFT----V---MRSWTDAINFRYNGTKTVVWGPGEL---D--LCHTKF---ERIDVREVEKAK 334 (347)
T ss_pred HHHHHHHHHHHHhCCCCCcC----c---CCccchhHHHHHCCCCEEEECCCch---h--hcCCCC---ceeeHHHHHHHH
Confidence 45555655555545432211 0 0113466678888999998764321 1 224433 789999999999
Q ss_pred HHHHHHHHHHh
Q 014338 414 KLVAESLAVSL 424 (426)
Q Consensus 414 ~~iae~la~~~ 424 (426)
+++++.+.+++
T Consensus 335 ~~l~~~~~~~~ 345 (347)
T PRK08652 335 EFLKALNEILL 345 (347)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 97
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=44.97 E-value=1.8e+02 Score=25.61 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHHHHhccCCceEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhccCCCCcEEEeeC---hhHHHHHHHH
Q 014338 89 ISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFE---NDEIDAVLDD 165 (426)
Q Consensus 89 ~~~~~~~~~~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~~Pvyf~~~---~~~~~~i~~~ 165 (426)
.+.+.++++. .++.++||=+|-++... .++.....+.|.. . |.+.+++||+|.-| +.+++.+|.+
T Consensus 43 ~~~l~~~i~~-~~i~~iVvGlP~~~~G~-------~~~~~~~v~~f~~---~-L~~~~~~~v~~~DEr~TT~~A~~~l~~ 110 (138)
T PRK00109 43 WDRLEKLIKE-WQPDGLVVGLPLNMDGT-------EGPRTERARKFAN---R-LEGRFGLPVVLVDERLSTVEAERALAD 110 (138)
T ss_pred HHHHHHHHHH-hCCCEEEEeccCCCCCC-------cCHHHHHHHHHHH---H-HHHHhCCCEEEEcCCcCHHHHHHHHHH
Confidence 5667777765 45777777799887531 1222233344532 2 23335899999954 3477777766
Q ss_pred h
Q 014338 166 V 166 (426)
Q Consensus 166 ~ 166 (426)
.
T Consensus 111 ~ 111 (138)
T PRK00109 111 V 111 (138)
T ss_pred c
Confidence 5
No 98
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=41.47 E-value=32 Score=36.19 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCCCCCcceEEEEEeCCCCCCCcchHHHHH
Q 014338 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (426)
Q Consensus 239 ~GAddn~SG~a~LLElar~~~~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~v~ 293 (426)
-||||- +|++.+++..+.+..... .-+..+|.+.++++||.|..|.+.+.-
T Consensus 141 LgaD~k-AGia~i~~al~~~~~~~~---~i~h~~i~~g~s~~Ee~g~rg~~~~~~ 191 (414)
T COG2195 141 LGADDK-AGIAEIMTALSVLREKHP---EIPHGGIRGGFSPDEEIGGRGAANKDV 191 (414)
T ss_pred cCCcch-hHHHHHHHHHHHHhhcCc---cccccCeEEEecchHHhhhhhhhhccH
Confidence 577655 888888888888885431 235789999999999999999998864
No 99
>PRK09864 putative peptidase; Provisional
Probab=32.33 E-value=39 Score=34.81 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=21.3
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 014338 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (426)
Q Consensus 199 ~~~NV~g~l~G~~~~~~~~~~~~Ivi~AHyDs~g~ 233 (426)
..-|+++.. |.+ .+.|++.||+|..|+
T Consensus 41 ~~GNli~~~-g~~-------~~kvml~AHmDevG~ 67 (356)
T PRK09864 41 GLGSFVARK-GNK-------GPKVAVVGHMDEVGF 67 (356)
T ss_pred CCCCEEEEe-CCC-------CcEEEEEecccccCE
Confidence 457999986 522 358999999999986
No 100
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=28.63 E-value=2e+02 Score=25.02 Aligned_cols=66 Identities=15% Similarity=0.033 Sum_probs=40.0
Q ss_pred HHHHHHHHhccCCceEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhccCCCCcEEEeeC---hhHHHHHHHH
Q 014338 89 ISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFE---NDEIDAVLDD 165 (426)
Q Consensus 89 ~~~~~~~~~~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~~Pvyf~~~---~~~~~~i~~~ 165 (426)
.+.+.++++. .++.++||=+|-++.. ..++.+...+.|.. .| ...+.+||+|.-| +.+++..|.+
T Consensus 37 ~~~l~~~i~~-~~~~~iVvGlP~~~dG-------~~~~~a~~v~~f~~---~L-~~~~~~~v~~~DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 37 WSRIEELLKE-WTPDKIVVGLPLNMDG-------TEGPLTERAQKFAN---RL-EGRFGVPVVLWDERLSTVEAESGLFA 104 (130)
T ss_pred HHHHHHHHHH-cCCCEEEEeccCCCCc-------CcCHHHHHHHHHHH---HH-HHHhCCCEEEEcCCcCHHHHHHHHHH
Confidence 5667777765 4687877779998763 12233333445533 22 3346899999954 2466666655
Q ss_pred h
Q 014338 166 V 166 (426)
Q Consensus 166 ~ 166 (426)
.
T Consensus 105 ~ 105 (130)
T TIGR00250 105 R 105 (130)
T ss_pred c
Confidence 3
No 101
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=26.99 E-value=1.4e+02 Score=25.63 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=43.5
Q ss_pred ccceEEEEecCCCCHHHHHHHHh-ccCCceEEEEec--CccccccCCCCCCCchhhHHHHHHHHH-HHHHhhccCCCCcE
Q 014338 75 LSRTVVMIPVRELNISFVTEYVS-RKHPLGGMLFLL--PEIFRLENGGGGKDVREKEVVKNVLLE-LEKLLVHAKLPYPV 150 (426)
Q Consensus 75 ~~R~~vv~~~~~~~~~~~~~~~~-~~~~~~gvli~l--p~~~~~~s~~~~n~~~~~~~~~~~~~~-le~~Ll~~~~~~Pv 150 (426)
...+.||++--.-++ .++.+. ++.++.||||+. +.+.. .+ ..|.. .+..-...+..||+
T Consensus 39 ~~gkIaLv~RG~C~f--~~K~~~Aq~aGA~avII~n~~~~~~~---~~------------~~~~~m~~~~~~~~~~~IP~ 101 (126)
T cd02126 39 VKGKIAIMERGDCMF--VEKARRVQKAGAIGGIVIDNNEGSSS---DT------------APMFAMSGDGDSTDDVTIPV 101 (126)
T ss_pred cCceEEEEECCCCcH--HHHHHHHHHCCCcEEEEEECCCCccc---cc------------cceeEeecCCCCCCCCeEEE
Confidence 445678888766663 333333 556788888873 22111 00 01111 11111123578999
Q ss_pred EEeeChhHHHHHHHHhccC
Q 014338 151 YFAFENDEIDAVLDDVKKN 169 (426)
Q Consensus 151 yf~~~~~~~~~i~~~~~~~ 169 (426)
.++.. ++-+.|++.+++.
T Consensus 102 v~I~~-~dG~~L~~~l~~~ 119 (126)
T cd02126 102 VFLFS-KEGSKLLAAIKEH 119 (126)
T ss_pred EEEEH-HHHHHHHHHHHhC
Confidence 99997 4888898888754
No 102
>PRK08554 peptidase; Reviewed
Probab=26.73 E-value=1.9e+02 Score=30.34 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhcCCCeEEEEeecCCCCCccccCCCCCCCcCCCCHHHHHHH
Q 014338 333 KQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSAAPELLESTGGLLDSRHFVDETSFIRS 412 (426)
Q Consensus 333 ~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~gIPa~tls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~~ 412 (426)
..+++.+.++.++.|++..... ..-.+|-..|+..|+|++.+..... +-|+.. |.++.+.|.+.
T Consensus 362 ~~lv~~~~~~~~~~g~~~~~~~-------~~GgtDa~~~~~~Gip~v~~Gp~~~------~~H~~~---E~v~i~~l~~~ 425 (438)
T PRK08554 362 EEIVKVALRVLKELGEDAEPVE-------GPGASDSRYFTPYGVKAIDFGPKGG------NIHGPN---EYVEIDSLKKM 425 (438)
T ss_pred hHHHHHHHHHHHHhCCCcEEEe-------cCCchHHHHHHhcCCCceEECCCCC------CCCCCc---ceEEHHHHHHH
Confidence 4555556555555554332211 1123566667788999998765321 224433 78999999999
Q ss_pred HHHHHHHHHHH
Q 014338 413 VKLVAESLAVS 423 (426)
Q Consensus 413 ~~~iae~la~~ 423 (426)
++++.+.+.++
T Consensus 426 ~~i~~~~i~~l 436 (438)
T PRK08554 426 PEVYKRIALRL 436 (438)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 103
>PRK07338 hypothetical protein; Provisional
Probab=24.94 E-value=2.1e+02 Score=29.19 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCceeccccccccCCCCCCCcchhhhhcCCCeEEE-EeecCCCCCccccCCCCCCCcCCCCHHHHHH
Q 014338 333 KQIFEGFTNVAEELGFKVGLKHKKINISNPRVAWEHEQFSRLRVTAAT-LSELSAAPELLESTGGLLDSRHFVDETSFIR 411 (426)
Q Consensus 333 ~~~~~~l~~~a~~~~~~~~~~~~ki~~~~~~~~~dHe~F~~~gIPa~t-ls~~~~~~~~~~~~~s~~Dt~d~ld~~~L~~ 411 (426)
..+++.+.++++.+|.+..... ....+|-..|...|||++. +.... . ..|++. |.++.+.+.+
T Consensus 322 ~~l~~~~~~~~~~~g~~~~~~~-------~~g~tDa~~~~~~giP~v~~~Gpg~----~--~~H~~~---E~v~i~~l~~ 385 (402)
T PRK07338 322 QRLFEAVQACGAALGLTIDWKD-------SGGVCDGNNLAAAGLPVVDTLGVRG----G--NIHSED---EFVILDSLVE 385 (402)
T ss_pred HHHHHHHHHHHHHcCCCccccc-------CCccchHHHHhhcCCCeEeccCCCC----C--CCCCcc---ceEehhhHHH
Confidence 3566667666666665443211 0112354456668999994 54321 1 224443 7899999999
Q ss_pred HHHHHHHHHHHH
Q 014338 412 SVKLVAESLAVS 423 (426)
Q Consensus 412 ~~~~iae~la~~ 423 (426)
.+++++..+.++
T Consensus 386 ~~~~~~~~l~~~ 397 (402)
T PRK07338 386 RAQLSALILMRL 397 (402)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 104
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=23.26 E-value=67 Score=19.13 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhccC
Q 014338 131 KNVLLELEKLLVHAK 145 (426)
Q Consensus 131 ~~~~~~le~~Ll~~~ 145 (426)
...||+||.-++.+-
T Consensus 4 ~~kWmeLE~IiLse~ 18 (20)
T PF08333_consen 4 AGKWMELENIILSEV 18 (20)
T ss_pred HHHHHHHHHHHHHhh
Confidence 457999999988753
No 105
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=20.57 E-value=65 Score=32.00 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcccccccceeEEEEEE
Q 014338 18 MLALVFILVACVELCDAATVVDVYRL 43 (426)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ef~vyrm 43 (426)
+|.||||+.+|++...++.+..||--
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~L~vy~~ 30 (330)
T PRK11205 5 LLPLLLLAAAPVFAAAAKPVLTVYTY 30 (330)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 58899999999887777788888854
No 106
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=20.05 E-value=5.2e+02 Score=21.70 Aligned_cols=72 Identities=7% Similarity=-0.070 Sum_probs=44.5
Q ss_pred cccceEEEEecCCCCHHHHHHHHh-ccCCceEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhccCCCCcEEE
Q 014338 74 DLSRTVVMIPVRELNISFVTEYVS-RKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYF 152 (426)
Q Consensus 74 ~~~R~~vv~~~~~~~~~~~~~~~~-~~~~~~gvli~lp~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~~Pvyf 152 (426)
++..+.||++....+.. ++... ++.++.||||+......... .|. -...+..+|+.+
T Consensus 42 ~~~gkIvlv~rg~c~f~--~K~~~A~~aGA~~vIv~n~~~~~~~~---------------~~~-----~~~~~~~Ip~v~ 99 (122)
T cd02130 42 SVAGNIALIERGECPFG--DKSALAGAAGAAAAIIYNNVPAGGLS---------------GTL-----GEPSGPYVPTVG 99 (122)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHCCCcEEEEEECCCCcccc---------------ccc-----CCCCCCEeeEEE
Confidence 46678888888777632 23322 45688899998544211100 110 011256799999
Q ss_pred eeChhHHHHHHHHhcc
Q 014338 153 AFENDEIDAVLDDVKK 168 (426)
Q Consensus 153 ~~~~~~~~~i~~~~~~ 168 (426)
+.. ++.+.|++.+++
T Consensus 100 Is~-~~G~~L~~~l~~ 114 (122)
T cd02130 100 ISQ-EDGKALVAALAN 114 (122)
T ss_pred ecH-HHHHHHHHHHhc
Confidence 987 588888888864
Done!