BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014340
         (426 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AVC|A Chain A, Bovine Annexin Vi (Calcium-Bound)
          Length = 673

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 210 IAGYLPIQENLLEINFS--RAKHFVDLLILCLQPSQSHSDIALKDVNIPSLKELHQAG 265
           +A Y    E  LE + +   + HF  +L++ LQ ++   D+  +D+    +++L++AG
Sbjct: 131 VAAYKDAYERDLEADITGDTSGHFRKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAG 188


>pdb|1M9I|A Chain A, Crystal Structure Of Phosphorylation-Mimicking Mutant
           T356d Of Annexin Vi
          Length = 672

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 210 IAGYLPIQENLLEINF--SRAKHFVDLLILCLQPSQSHSDIALKDVNIPSLKELHQAG 265
           +A Y    E  LE +     + HF  +L++ LQ ++   D+  +D+    +++L++AG
Sbjct: 130 VAAYKDAYERDLEADIIGDTSGHFQKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAG 187


>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
           Glucose
          Length = 485

 Score = 29.3 bits (64), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 11  YDVLTDMEKLADALSGELESLHPLAREC 38
           YDV++D+EKL   L+ ++ S  P+A  C
Sbjct: 241 YDVVSDIEKLEGKLADDIPSNSPMAINC 268


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,123,061
Number of Sequences: 62578
Number of extensions: 491159
Number of successful extensions: 1369
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 5
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)