BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014340
(426 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 193/426 (45%), Gaps = 52/426 (12%)
Query: 38 CSIYRVPETTRCSNPT---PRIVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASF 94
C I+RVPE+ NP P++VSIGP+H+G++ L+ +++HK R L+ FL K +
Sbjct: 46 CCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEE 105
Query: 95 LGFIKAR---EAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKFYQPNFRTDEDLIS 151
+KA E ++R Y+E + G D MVL D F++ +FL N ED I
Sbjct: 106 NVLVKAVVDLEDKIRKSYSEELKTGHDLMFMMVL-DGCFILMVFL-IMSGNIELSEDPIF 163
Query: 152 RKSFLHVDMKHEILLLENQLPLFILNDLFNLAKTTMFETNLYEEFSFMTISCFWFRGNI- 210
+L ++ ++LLLENQ+P F+L L+ +K + I+ +F+ I
Sbjct: 164 SIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGV-------SSDLNRIAFHFFKNPID 216
Query: 211 --AGYLPIQENLLEINFSRAKHFVDLLILCLQPSQSHSDIAL-----------KDVNIPS 257
Y N +AKH +DL+ P+ S SD A K N+PS
Sbjct: 217 KEGSYWEKHRNY------KAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPS 270
Query: 258 L-----------KELHQAGVKFKPGSSK--NLLDIKFNEGILEIPFLTVYGATERLYRNV 304
+ K L G+KF+ SK ++L+++ + L+IP L G + N
Sbjct: 271 VDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNC 330
Query: 305 LAFEMMHCYTSY-FNDHIIMMDYLVNTPKDAELLVQNEIM---GLGYTEAFPTLFHNLDN 360
+AFE + +S +I+ M L+N +D L ++++ G F +
Sbjct: 331 VAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISK 390
Query: 361 GCIINYSCFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQ 420
+ + V + Y K ++ A + +F +PW +S A + ++LLT +Q
Sbjct: 391 DVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQ 450
Query: 421 TVCSLI 426
+ +++
Sbjct: 451 STVAIL 456
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 23 ALSGELESLHPLARECSIYRVPETTRCSNP---TPRIVSIGPFHHGKEELKAMEEHK--- 76
+L ELE SI+ VP+ CS+P TP VSIGP+H K EL ME +K
Sbjct: 28 SLDAELEEHDLEEVTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMI 87
Query: 77 KRYLKCFLQRTKVRIASFLGFIKAREAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFL 136
R ++ Q R + +++ E ++R CY + I + + ++ VD+ FLIE FL
Sbjct: 88 ARKIRN--QYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIE-FL 144
Query: 137 KFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILNDLFNLAKTTMFETNLYEEF 196
K Y +FR E LI+R H ++ +I+++ENQ+PLF+L KT F+ E
Sbjct: 145 KIY--SFRKVETLINRVG--HNEILRDIMMIENQIPLFVLR------KTLEFQLESTESA 194
Query: 197 SFMTISCFWFRGNIAGYLPI-----QENLLEINFSRAKHFVDLLILCLQP 241
+ +S G P+ + +L+ F H +D L + P
Sbjct: 195 DDLLLSV--LTGLCKDLSPLVIKFDDDQILKAQFQECNHILDFLYQMIVP 242
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 250 LKDVNIPSLKELHQAGVKFKPGSSKNLLDIKF--NEGILEIPFLTVYGATERLYRNVLAF 307
++++ IPS+ +LH+AGV+FKP + N+ + F N G +P + + TE + RN++A+
Sbjct: 340 VEELTIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAY 399
Query: 308 EMMHCYTS-YFNDHIIMMDYLVNTPKDAELLVQNEIM 343
E + F + +++ ++++ +D LL + ++
Sbjct: 400 EATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVL 436
>sp|P93956|RPOA_FESSE DNA-directed RNA polymerase subunit alpha OS=Festucopsis serpentini
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7H6G1|RPOA_PSEPI DNA-directed RNA polymerase subunit alpha OS=Pseudoroegneria
spicata GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7H6I5|RPOA_ELYCA DNA-directed RNA polymerase subunit alpha OS=Elymus canadensis
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P93993|RPOA_AUSVE DNA-directed RNA polymerase subunit alpha OS=Australopyrum
velutinum GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P93974|RPOA_EREDI DNA-directed RNA polymerase subunit alpha OS=Eremopyrum distans
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFKK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P12073|RPOA_WHEAT DNA-directed RNA polymerase subunit alpha OS=Triticum aestivum
GN=rpoA PE=3 SV=2
Length = 339
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGASFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7GED0|RPOA_TAECM DNA-directed RNA polymerase subunit alpha OS=Taeniatherum
caput-medusae GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGASFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q6YLW2|RPOA_SECCE DNA-directed RNA polymerase subunit alpha OS=Secale cereale GN=rpoA
PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGASFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P92892|RPOA_AEGSP DNA-directed RNA polymerase subunit alpha OS=Aegilops speltoides
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGASFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7GED9|RPOA_AEGCM DNA-directed RNA polymerase subunit alpha OS=Aegilops comosa
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGASFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q8MAI8|RPOA_ELYHY DNA-directed RNA polymerase subunit alpha OS=Elymus hystrix GN=rpoA
PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q8MAJ0|RPOA_AEGUN DNA-directed RNA polymerase subunit alpha OS=Aegilops uniaristata
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGASFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P92418|RPOA_PSAFR DNA-directed RNA polymerase subunit alpha OS=Psathyrostachys
fragilis GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P93968|RPOA_FESFE DNA-directed RNA polymerase subunit alpha OS=Festucopsis
festucoides GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P92392|RPOA_HORVU DNA-directed RNA polymerase subunit alpha OS=Hordeum vulgare
GN=rpoA PE=3 SV=2
Length = 339
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7H6J0|RPOA_HORMA DNA-directed RNA polymerase subunit alpha OS=Hordeum marinum
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7H6J1|RPOA_HORJU DNA-directed RNA polymerase subunit alpha OS=Hordeum jubatum
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7H6J2|RPOA_HORBU DNA-directed RNA polymerase subunit alpha OS=Hordeum bulbosum
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|Q7H6F6|RPOA_PSAJU DNA-directed RNA polymerase subunit alpha OS=Psathyrostachys juncea
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P92209|RPOA_AGRCR DNA-directed RNA polymerase subunit alpha OS=Agropyron cristatum
GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P93962|RPOA_PSAST DNA-directed RNA polymerase subunit alpha OS=Psathyrostachys
stoloniformis GN=rpoA PE=3 SV=1
Length = 339
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFQK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
>sp|P92220|RPOA_BROIN DNA-directed RNA polymerase subunit alpha OS=Bromus inermis GN=rpoA
PE=3 SV=1
Length = 339
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 61 PFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASFLGFIKAREAELRNC-YAETIHLGSDE 119
PF H +EE + EE+K R+ K K ++ NC + + + L S
Sbjct: 228 PFLHAEEEGTSFEENKNRFTPPLFTFKK----RLTNLKKNKKGIPLNCIFIDQLELTSRT 283
Query: 120 FIKMVLVDAVFLIELFLKFYQPNFRTDEDLISRKSFLHVDMKHEILLLENQLPLFILND 178
+ + + L++L K T+EDL+ SF D KH LE LP+ +L +
Sbjct: 284 YNCLKRANIHTLLDLLSK-------TEEDLMRIDSFRMEDRKHIWDTLEKHLPIDLLKN 335
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,351,226
Number of Sequences: 539616
Number of extensions: 6444077
Number of successful extensions: 19302
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 19257
Number of HSP's gapped (non-prelim): 37
length of query: 426
length of database: 191,569,459
effective HSP length: 120
effective length of query: 306
effective length of database: 126,815,539
effective search space: 38805554934
effective search space used: 38805554934
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)