Query         014340
Match_columns 426
No_of_seqs    156 out of 683
Neff          7.1 
Searched_HMMs 46136
Date          Fri Mar 29 04:10:32 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014340hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF03140 DUF247:  Plant protein 100.0  6E-107  1E-111  830.3  33.0  368   40-417     1-391 (391)
  2 PRK10404 hypothetical protein;  68.4     4.9 0.00011   33.5   2.8   20  399-419    78-97  (101)
  3 PRK10132 hypothetical protein;  62.6     7.4 0.00016   32.9   2.8   20  399-419    84-103 (108)
  4 PF07438 DUF1514:  Protein of u  62.1     8.7 0.00019   29.1   2.8   21  402-422     2-22  (66)
  5 PHA02103 hypothetical protein   61.7      12 0.00026   31.3   3.9   73  268-343    11-101 (135)
  6 PF14770 TMEM18:  Transmembrane  58.5     8.9 0.00019   33.1   2.7   46  375-423    55-100 (123)
  7 PF12911 OppC_N:  N-terminal TM  55.6      14  0.0003   26.8   3.0   31  393-423     8-38  (56)
  8 PF11293 DUF3094:  Protein of u  55.2      28  0.0006   25.6   4.3   37  374-415     8-44  (55)
  9 PF09069 EF-hand_3:  EF-hand;    49.6      40 0.00087   27.5   5.0   53   75-127     3-76  (90)
 10 PF05421 DUF751:  Protein of un  48.5      29 0.00063   26.2   3.7   30  397-426    30-59  (61)
 11 cd00948 FBP_aldolase_I_a Fruct  44.9      30 0.00065   34.7   4.3   81  334-420    82-166 (330)
 12 PF04971 Lysis_S:  Lysis protei  38.4      50  0.0011   25.5   3.6   34  388-421    19-52  (68)
 13 COG4575 ElaB Uncharacterized c  37.4      34 0.00073   28.6   2.8   19  399-418    81-99  (104)
 14 PF10961 DUF2763:  Protein of u  34.0      52  0.0011   26.8   3.4   25  400-424    14-41  (91)
 15 PF14579 HHH_6:  Helix-hairpin-  32.8 1.1E+02  0.0025   24.4   5.3   79  265-347     1-84  (90)
 16 PTZ00019 fructose-bisphosphate  32.7      58  0.0013   33.1   4.2   81  334-420    85-171 (355)
 17 KOG3110 Riboflavin kinase [Coe  31.9      29 0.00064   30.4   1.7   58   53-110    66-138 (153)
 18 cd00344 FBP_aldolase_I Fructos  31.7      62  0.0013   32.7   4.2   81  334-420    83-167 (328)
 19 PF08181 DegQ:  DegQ (SacQ) fam  29.6 1.5E+02  0.0032   20.5   4.4   31   72-102     1-31  (46)
 20 PF15103 G0-G1_switch_2:  G0/G1  28.6      55  0.0012   27.2   2.7   21  404-424    28-48  (102)
 21 PLN02227 fructose-bisphosphate  27.3      26 0.00056   35.9   0.7   63  329-396   125-194 (399)
 22 PF11446 DUF2897:  Protein of u  27.3      68  0.0015   23.7   2.7   20  400-419     4-23  (55)
 23 KOG4134 DNA-dependent RNA poly  27.0      55  0.0012   31.2   2.7   36   35-78     22-57  (253)
 24 PF05957 DUF883:  Bacterial pro  26.1      68  0.0015   25.9   2.9   21  398-419    70-90  (94)
 25 PLN02455 fructose-bisphosphate  25.5      90   0.002   31.7   4.1   58  334-396    90-150 (358)
 26 cd00925 Cyt_c_Oxidase_VIa Cyto  25.2      72  0.0016   25.8   2.8   24  400-423    14-37  (86)
 27 KOG1557 Fructose-biphosphate a  22.6      35 0.00076   33.9   0.6   55  334-393    94-151 (363)
 28 PHA02947 S-S bond formation pa  21.0      91   0.002   29.5   3.0   19  398-416   175-194 (215)

No 1  
>PF03140 DUF247:  Plant protein of unknown function;  InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00  E-value=6.1e-107  Score=830.32  Aligned_cols=368  Identities=42%  Similarity=0.724  Sum_probs=331.0

Q ss_pred             eeecCcccccCCC---CCceeeecccCCCchhhhhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhhccccC
Q 014340           40 IYRVPETTRCSNP---TPRIVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTK---VRIASFLGFIKAREAELRNCYAETI  113 (426)
Q Consensus        40 I~rVP~~lr~~n~---~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~---~~l~~~~~~i~~~e~~aR~cY~e~~  113 (426)
                      |||||+++|++|+   +|++|||||||||+++|+.||++|++|++.|++|++   .++++++++|++++++||+||++++
T Consensus         1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~   80 (391)
T PF03140_consen    1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI   80 (391)
T ss_pred             CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999998   999999999999999999999999999999999999   7899999999999999999999999


Q ss_pred             C-CChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc-ccccccchhhhhhhhhhhccCchHHHHHHHHHhhhccccccc
Q 014340          114 H-LGSDEFIKMVLVDAVFLIELFLKFYQPNFRTDEDL-ISRKSFLHVDMKHEILLLENQLPLFILNDLFNLAKTTMFETN  191 (426)
Q Consensus       114 ~-~~~~eF~~MmllDgCFiLe~l~~~~~~~~~~~~D~-~~~~~~~~~~i~~DllLLENQIPffVL~~L~~~~~~~~~~~~  191 (426)
                      + +++++|++||++|||||||+|+++... . +.+|| +++.+|....|.+||+|||||||||||++||++...    +.
T Consensus        81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~~-~-~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~----~~  154 (391)
T PF03140_consen   81 DDMSSDEFVEMMLLDGCFLLEFFLRYSRS-D-GENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFG----SK  154 (391)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhhhhc-c-ccccccccccccccccchhheeeecccchHHHHHHHHHHhcc----cc
Confidence            7 999999999999999999999998761 1 25688 888999999999999999999999999999999984    33


Q ss_pred             ccccchHHHHHHHhcccccCCCCCCcccccccccCcCCChHHHHHHHhCCCCCC---CC-cC-------CCccccCCHHH
Q 014340          192 LYEEFSFMTISCFWFRGNIAGYLPIQENLLEINFSRAKHFVDLLILCLQPSQSH---SD-IA-------LKDVNIPSLKE  260 (426)
Q Consensus       192 ~~~~~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~~~---~~-~~-------~~~~~~~sAte  260 (426)
                      .....++.+++.+||....... .+.   ......+++|||||+|.+++|+...   .+ .+       .....+|||||
T Consensus       155 ~~~~~~l~~l~~~~~~~~~~~~-~~~---~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~e  230 (391)
T PF03140_consen  155 SDVDESLIDLVLKFFYKHWPSW-PPD---EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATE  230 (391)
T ss_pred             cCccchHHHHHHhHhccccccc-ccc---ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHH
Confidence            3456789999999994322222 221   1224457899999999999993211   11 11       12357999999


Q ss_pred             HHHcCcEEecCCCC-CccceEecceeeecCeEEeeccchhhhccHHHHHHhccC-CcchhhHHHHHHhhcCChhhHHHHH
Q 014340          261 LHQAGVKFKPGSSK-NLLDIKFNEGILEIPFLTVYGATERLYRNVLAFEMMHCY-TSYFNDHIIMMDYLVNTPKDAELLV  338 (426)
Q Consensus       261 L~~aGVkfk~~~~~-~llDI~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~-~~~vtsYv~fM~~LI~t~eDV~lL~  338 (426)
                      |++|||+|+++++. +++||+|++|+|+||+|.||++|+++||||||||||++. +.+||||+.||++||+|++||++|+
T Consensus       231 L~~aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~  310 (391)
T PF03140_consen  231 LREAGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLR  310 (391)
T ss_pred             HHhCCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHH
Confidence            99999999998876 599999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             hcCcc--ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCCchHHHHHhhcccccccchHHHHHHHHHHHHHH
Q 014340          339 QNEIM--GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLL  416 (426)
Q Consensus       339 ~kGIi--~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~~w~~w~a~l~~~yf~npW~~is~vaA~~ll~l  416 (426)
                      ++|||  ++|||+||++|||+||+++..+.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|++
T Consensus       311 ~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~l  390 (391)
T PF03140_consen  311 RKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLL  390 (391)
T ss_pred             hCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHh
Confidence            99999  8999999999999999999988778899999999999999999999999999999999999999999999999


Q ss_pred             H
Q 014340          417 T  417 (426)
Q Consensus       417 t  417 (426)
                      |
T Consensus       391 T  391 (391)
T PF03140_consen  391 T  391 (391)
T ss_pred             C
Confidence            7


No 2  
>PRK10404 hypothetical protein; Provisional
Probab=68.43  E-value=4.9  Score=33.49  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=14.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHH
Q 014340          399 NTPWASISVIAAVILLLLTSI  419 (426)
Q Consensus       399 ~npW~~is~vaA~~ll~lt~~  419 (426)
                      .|||..+++.| .++|++.++
T Consensus        78 e~Pw~avGiaa-gvGlllG~L   97 (101)
T PRK10404         78 EKPWQGIGVGA-AVGLVLGLL   97 (101)
T ss_pred             hCcHHHHHHHH-HHHHHHHHH
Confidence            38999999655 467776665


No 3  
>PRK10132 hypothetical protein; Provisional
Probab=62.59  E-value=7.4  Score=32.87  Aligned_cols=20  Identities=25%  Similarity=0.697  Sum_probs=14.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHH
Q 014340          399 NTPWASISVIAAVILLLLTSI  419 (426)
Q Consensus       399 ~npW~~is~vaA~~ll~lt~~  419 (426)
                      .|||..+++.|+ +++++.++
T Consensus        84 ~~Pw~svgiaag-vG~llG~L  103 (108)
T PRK10132         84 ERPWCSVGTAAA-VGIFIGAL  103 (108)
T ss_pred             hCcHHHHHHHHH-HHHHHHHH
Confidence            489999996554 66666654


No 4  
>PF07438 DUF1514:  Protein of unknown function (DUF1514);  InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=62.05  E-value=8.7  Score=29.14  Aligned_cols=21  Identities=33%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 014340          402 WASISVIAAVILLLLTSIQTV  422 (426)
Q Consensus       402 W~~is~vaA~~ll~lt~~QTv  422 (426)
                      |.++|.+.|+++|++-..|+-
T Consensus         2 WIiiSIvLai~lLI~l~~ns~   22 (66)
T PF07438_consen    2 WIIISIVLAIALLISLSVNSE   22 (66)
T ss_pred             hhhHHHHHHHHHHHHHhhhHH
Confidence            999999999999999888864


No 5  
>PHA02103 hypothetical protein
Probab=61.74  E-value=12  Score=31.28  Aligned_cols=73  Identities=18%  Similarity=0.274  Sum_probs=50.0

Q ss_pred             EecCCCCCccc--eEe----cceee--ecCeEEeeccchhhhccHHHHHHhccC---C-------cchhhHHHHHHhhcC
Q 014340          268 FKPGSSKNLLD--IKF----NEGIL--EIPFLTVYGATERLYRNVLAFEMMHCY---T-------SYFNDHIIMMDYLVN  329 (426)
Q Consensus       268 fk~~~~~~llD--I~F----~~G~L--~IP~l~id~~T~~llrNLiA~Eq~~~~---~-------~~vtsYv~fM~~LI~  329 (426)
                      ||+...++.+-  |.|    ++.+|  +||.+..|..+.-+-|=.+-+|.|...   +       .++-+|-..   .-.
T Consensus        11 fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry---f~e   87 (135)
T PHA02103         11 FKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY---FGE   87 (135)
T ss_pred             cCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH---hcc
Confidence            34445555544  344    34554  899999999999999999999999753   1       234455443   335


Q ss_pred             ChhhHHHHHhcCcc
Q 014340          330 TPKDAELLVQNEIM  343 (426)
Q Consensus       330 t~eDV~lL~~kGIi  343 (426)
                      .+|-|++-.+-||=
T Consensus        88 e~e~ie~we~ygve  101 (135)
T PHA02103         88 EAEGVELWEEYGVE  101 (135)
T ss_pred             cchhhhHHHHhCcc
Confidence            66778888888876


No 6  
>PF14770 TMEM18:  Transmembrane protein 18
Probab=58.46  E-value=8.9  Score=33.15  Aligned_cols=46  Identities=33%  Similarity=0.406  Sum_probs=34.0

Q ss_pred             HHHHHhhhCCchHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 014340          375 VADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVC  423 (426)
Q Consensus       375 ~~~ln~~~~~~w~~w~a~l~~~yf~npW~~is~vaA~~ll~lt~~QTv~  423 (426)
                      -+.+|++..+.|+.   .-+++||.+-=.+||++-++=+|+.+++..+.
T Consensus        55 aE~iN~~~a~nW~~---Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~  100 (123)
T PF14770_consen   55 AEYINEYAARNWRS---FSKQNYFDSSGVFISVVFSAPLLLNCLIILVN  100 (123)
T ss_pred             HHHHHHHHHHHHHH---HhhccCcCCCCeeehHHHHHhHHHHHHHHHHH
Confidence            46889999877744   34679999999999999887555555555443


No 7  
>PF12911 OppC_N:  N-terminal TM domain of oligopeptide transport permease C
Probab=55.59  E-value=14  Score=26.76  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=24.2

Q ss_pred             hcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 014340          393 LKQNYFNTPWASISVIAAVILLLLTSIQTVC  423 (426)
Q Consensus       393 l~~~yf~npW~~is~vaA~~ll~lt~~QTv~  423 (426)
                      ..+++++|+.+++|++.-+++++++++.-++
T Consensus         8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~   38 (56)
T PF12911_consen    8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFI   38 (56)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence            4567778999999998888777877776554


No 8  
>PF11293 DUF3094:  Protein of unknown function (DUF3094);  InterPro: IPR021444  This family of proteins with unknown function appears to be restricted to Gammaproteobacteria. 
Probab=55.16  E-value=28  Score=25.59  Aligned_cols=37  Identities=19%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             HHHHHHhhhCCchHHHHHhhcccccccchHHHHHHHHHHHHH
Q 014340          374 VVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLL  415 (426)
Q Consensus       374 v~~~ln~~~~~~w~~w~a~l~~~yf~npW~~is~vaA~~ll~  415 (426)
                      =.+.|++|-++.||.    .-|+-|+ ||..+.++.|+++.+
T Consensus         8 DQ~~Vd~yL~a~~~~----VER~PFr-P~~Ll~~li~Vv~gl   44 (55)
T PF11293_consen    8 DQQRVDEYLQAGVNQ----VERKPFR-PWRLLIVLIVVVIGL   44 (55)
T ss_pred             HHHHHHHHHhCCCCc----cccCCcc-hHHHHHHHHHHHHHH
Confidence            347899999999974    4677786 999999888876644


No 9  
>PF09069 EF-hand_3:  EF-hand;  InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=49.64  E-value=40  Score=27.48  Aligned_cols=53  Identities=17%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhhh-----HHHHHHHHHH-------------HHHHHHHhhccc---cCCCChHHHHHHHHHH
Q 014340           75 HKKRYLKCFLQRTKV-----RIASFLGFIK-------------AREAELRNCYAE---TIHLGSDEFIKMVLVD  127 (426)
Q Consensus        75 ~K~~~l~~~l~r~~~-----~l~~~~~~i~-------------~~e~~aR~cY~e---~~~~~~~eF~~MmllD  127 (426)
                      .|.||+-+++...+.     .++.++..+.             ..|..+|+|+..   .-+++.++|++.|..|
T Consensus         3 dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e   76 (90)
T PF09069_consen    3 DKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE   76 (90)
T ss_dssp             HHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred             HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence            588999888866431     3444443332             367889999976   4578889998887654


No 10 
>PF05421 DUF751:  Protein of unknown function (DUF751);  InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=48.53  E-value=29  Score=26.22  Aligned_cols=30  Identities=17%  Similarity=0.264  Sum_probs=25.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHcC
Q 014340          397 YFNTPWASISVIAAVILLLLTSIQTVCSLI  426 (426)
Q Consensus       397 yf~npW~~is~vaA~~ll~lt~~QTv~svl  426 (426)
                      -++||-++++++++.+..+..+.+|+-+++
T Consensus        30 llk~p~tai~~i~~~~~~~~~l~~tL~aMl   59 (61)
T PF05421_consen   30 LLKNPVTAIALIGILIGGFIFLYFTLRAML   59 (61)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            357899999999999999999999987764


No 11 
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=44.86  E-value=30  Score=34.75  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=53.4

Q ss_pred             HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhhcccccccc-hHHHHHHH
Q 014340          334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATLKQNYFNTP-WASISVIA  409 (426)
Q Consensus       334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l~~~yf~np-W~~is~va  409 (426)
                      |++|+++||| ++.=|+-+..+.+.  .+-.  .-.. ++++.+...+||.-  |..+|++.++-.-= .| ...|--.|
T Consensus        82 ~~~L~~~GIvPgIKVDkGl~~l~g~--~~e~--~t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~-~PS~~~I~~na  155 (330)
T cd00948          82 VDILKEKGIVPGIKVDKGLVPLAGT--DGET--TTQG-LDGLAERCAKYYKQGARFAKWRAVLKIGNG-TPSELAIKENA  155 (330)
T ss_pred             HHHHHHCCCeeeEEeCCCccccCCC--CCCc--cCcC-hHHHHHHHHHHhhcCCcceeeheeeeccCC-CCcHHHHHHHH
Confidence            8899999999 88888877777654  2211  1223 89999999999864  67799987765422 13 34455455


Q ss_pred             HHHHHHHHHHH
Q 014340          410 AVILLLLTSIQ  420 (426)
Q Consensus       410 A~~ll~lt~~Q  420 (426)
                      ..+.=...+.|
T Consensus       156 ~~LaryA~icq  166 (330)
T cd00948         156 HGLARYAAICQ  166 (330)
T ss_pred             HHHHHHHHHHH
Confidence            55544445544


No 12 
>PF04971 Lysis_S:  Lysis protein S ;  InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=38.43  E-value=50  Score=25.50  Aligned_cols=34  Identities=29%  Similarity=0.580  Sum_probs=25.0

Q ss_pred             HHHHhhcccccccchHHHHHHHHHHHHHHHHHHH
Q 014340          388 KWKATLKQNYFNTPWASISVIAAVILLLLTSIQT  421 (426)
Q Consensus       388 ~w~a~l~~~yf~npW~~is~vaA~~ll~lt~~QT  421 (426)
                      -|...+...+-+.-|.+|+++.++++-++|.+--
T Consensus        19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~ltN   52 (68)
T PF04971_consen   19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLTN   52 (68)
T ss_pred             HHHHHHHhccCcccchhHHHHHHHHHHHHHHHhH
Confidence            3555555556667899999999998888887643


No 13 
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=37.37  E-value=34  Score=28.64  Aligned_cols=19  Identities=47%  Similarity=0.739  Sum_probs=13.2

Q ss_pred             ccchHHHHHHHHHHHHHHHH
Q 014340          399 NTPWASISVIAAVILLLLTS  418 (426)
Q Consensus       399 ~npW~~is~vaA~~ll~lt~  418 (426)
                      .|||..|++-||+ +|++.+
T Consensus        81 e~PWq~VGvaAaV-GlllGl   99 (104)
T COG4575          81 ENPWQGVGVAAAV-GLLLGL   99 (104)
T ss_pred             cCCchHHHHHHHH-HHHHHH
Confidence            4899999977664 444444


No 14 
>PF10961 DUF2763:  Protein of unknown function (DUF2763);  InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=34.03  E-value=52  Score=26.85  Aligned_cols=25  Identities=24%  Similarity=0.465  Sum_probs=16.9

Q ss_pred             cchH---HHHHHHHHHHHHHHHHHHHHH
Q 014340          400 TPWA---SISVIAAVILLLLTSIQTVCS  424 (426)
Q Consensus       400 npW~---~is~vaA~~ll~lt~~QTv~s  424 (426)
                      +||.   ++-++-+++-+|..++||+++
T Consensus        14 spWrls~I~d~Fwgi~~fI~lFF~Tl~~   41 (91)
T PF10961_consen   14 SPWRLSRITDFFWGIINFIVLFFQTLFS   41 (91)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5663   555666677677777888775


No 15 
>PF14579 HHH_6:  Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=32.80  E-value=1.1e+02  Score=24.37  Aligned_cols=79  Identities=15%  Similarity=0.262  Sum_probs=52.8

Q ss_pred             CcEEecCC-CCCccceEecc--eeeecCeEEeeccchhhhccHHHHHHhccCCcchhhHHHHHHhh-cCChhhHHHHHhc
Q 014340          265 GVKFKPGS-SKNLLDIKFNE--GILEIPFLTVYGATERLYRNVLAFEMMHCYTSYFNDHIIMMDYL-VNTPKDAELLVQN  340 (426)
Q Consensus       265 GVkfk~~~-~~~llDI~F~~--G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~vtsYv~fM~~L-I~t~eDV~lL~~k  340 (426)
                      ||++.+.+ ..+-.+-+..+  +.+.+|--.|..-.+.....+++-=+ .   ..++|+--|...+ --+..+++.|.+.
T Consensus         1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~---g~f~s~~df~~R~~~i~~~~le~Li~a   76 (90)
T PF14579_consen    1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N---GPFKSLEDFIQRLPKINKRQLEALIKA   76 (90)
T ss_dssp             T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C---SS-SSHHHHHHHS-TS-HHHHHHHHHT
T ss_pred             CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c---CCCCCHHHHHHHHhcCCHHHHHHHHHC
Confidence            67777632 23334555555  79999999999888887777766555 2   4478888888888 7778999999999


Q ss_pred             Ccc-ccCC
Q 014340          341 EIM-GLGY  347 (426)
Q Consensus       341 GIi-~lgs  347 (426)
                      |.+ .++.
T Consensus        77 Gafd~~~~   84 (90)
T PF14579_consen   77 GAFDSFGK   84 (90)
T ss_dssp             TTTTTCSS
T ss_pred             CCccccCh
Confidence            999 7765


No 16 
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=32.71  E-value=58  Score=33.06  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=51.2

Q ss_pred             HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhhccc---ccccchHHHHH
Q 014340          334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATLKQN---YFNTPWASISV  407 (426)
Q Consensus       334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l~~~---yf~npW~~is~  407 (426)
                      |++|+++||| ++.=|+-+..+ .+- .+-  ..-.. ++++.+...+||.-  |..+||+.++-.   -..+ -.+|-.
T Consensus        85 ~~~L~~~GIvPgIKVDkGl~~l-~G~-~~e--~~t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~~g~PS-~~aI~~  158 (355)
T PTZ00019         85 VELLKEKGIVPGIKVDKGLVTL-PGT-DGE--TSTQG-LDGLAERAKKYYKAGARFAKWRAVLKIDPAKGKPS-ELAIQE  158 (355)
T ss_pred             HHHHHHCCCeeeEEcCCCccCC-CCC-CCC--ccCcC-hHHHHHHHHHHHhcCCceeeeeeeeeecCCCCCCc-HHHHHH
Confidence            8899999999 88888777766 332 111  11233 99999999999864  677999877653   2222 233444


Q ss_pred             HHHHHHHHHHHHH
Q 014340          408 IAAVILLLLTSIQ  420 (426)
Q Consensus       408 vaA~~ll~lt~~Q  420 (426)
                      .|..+.=...+.|
T Consensus       159 na~~LaryA~icq  171 (355)
T PTZ00019        159 NAWTLARYAAICQ  171 (355)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444


No 17 
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=31.92  E-value=29  Score=30.40  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=38.0

Q ss_pred             CCceeeec--ccCCCch---hhhhHHHHHHHHHHHHHHHh--h--------hHHHHHHHHHHHHHHHHHhhcc
Q 014340           53 TPRIVSIG--PFHHGKE---ELKAMEEHKKRYLKCFLQRT--K--------VRIASFLGFIKAREAELRNCYA  110 (426)
Q Consensus        53 ~P~~VSIG--PyHhg~~---~L~~mE~~K~~~l~~~l~r~--~--------~~l~~~~~~i~~~e~~aR~cY~  110 (426)
                      -|.++|||  ||..++.   ++..++..|--+-...++-.  |        .++++++++|....+.|+..-+
T Consensus        66 ~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~  138 (153)
T KOG3110|consen   66 FKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD  138 (153)
T ss_pred             eeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence            79999999  8888764   23334444443333333211  1        2699999999998888887654


No 18 
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=31.69  E-value=62  Score=32.67  Aligned_cols=81  Identities=21%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhhcccccccch-HHHHHHH
Q 014340          334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATLKQNYFNTPW-ASISVIA  409 (426)
Q Consensus       334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l~~~yf~npW-~~is~va  409 (426)
                      |++|+++||| ++.=|+-+..+.+  ..+-.  .-.. ++++.+...+||..  +..+||+.++-.- ..|- ..|.-.|
T Consensus        83 ~~ll~~~GIvPgIKVDkGl~~l~g--~~~ek--~t~G-LD~L~~R~~~y~~~GarfaKwRsVi~i~~-~~Ps~~~I~~na  156 (328)
T cd00344          83 PQVIKSKGGVVGIKVDKGVVPLAG--TNGET--TTQG-LDGLSERCAQYKKDGADFAKWRCVLKIGE-HTPSALAIMENA  156 (328)
T ss_pred             HHHHHhCCCeeeEEecCCcccCCC--CCCCc--cCCC-hHHHHHHHHHHhhcCCceeeeeeeeecCC-CCCcHHHHHHHH
Confidence            7899999999 8888877776654  22221  1233 99999999999854  5678998776531 1122 3444444


Q ss_pred             HHHHHHHHHHH
Q 014340          410 AVILLLLTSIQ  420 (426)
Q Consensus       410 A~~ll~lt~~Q  420 (426)
                      ..+.=...+.|
T Consensus       157 ~~laryA~~cq  167 (328)
T cd00344         157 NVLARYASICQ  167 (328)
T ss_pred             HHHHHHHHHHH
Confidence            44444444444


No 19 
>PF08181 DegQ:  DegQ (SacQ) family;  InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=29.55  E-value=1.5e+02  Score=20.49  Aligned_cols=31  Identities=26%  Similarity=0.222  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 014340           72 MEEHKKRYLKCFLQRTKVRIASFLGFIKARE  102 (426)
Q Consensus        72 mE~~K~~~l~~~l~r~~~~l~~~~~~i~~~e  102 (426)
                      ||++|..-+++++-|..+.+.+-.+.++..-
T Consensus         1 mek~~ieelkqll~rle~eirett~sl~nin   31 (46)
T PF08181_consen    1 MEKKKIEELKQLLWRLENEIRETTDSLRNIN   31 (46)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888887766665555554443


No 20 
>PF15103 G0-G1_switch_2:  G0/G1 switch protein 2
Probab=28.56  E-value=55  Score=27.21  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 014340          404 SISVIAAVILLLLTSIQTVCS  424 (426)
Q Consensus       404 ~is~vaA~~ll~lt~~QTv~s  424 (426)
                      +++-+.|++..++.+++|+|+
T Consensus        28 vLGSvLA~~Gvv~GLVEtVCs   48 (102)
T PF15103_consen   28 VLGSVLAFFGVVIGLVETVCS   48 (102)
T ss_pred             hhhhHHHHHHHHHHHHHHHhC
Confidence            367778899999999999997


No 21 
>PLN02227 fructose-bisphosphate aldolase I
Probab=27.30  E-value=26  Score=35.94  Aligned_cols=63  Identities=17%  Similarity=0.345  Sum_probs=46.8

Q ss_pred             CChhh----HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhhccc
Q 014340          329 NTPKD----AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATLKQN  396 (426)
Q Consensus       329 ~t~eD----V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l~~~  396 (426)
                      .+..|    |++|.++||| ++.=|+-+..+.+.  .+-..  -.. ++++.+...+||+.  +..+|++-++-.
T Consensus       125 Q~~~dG~pf~d~L~~~GIVPGIKVDKGl~~l~g~--~~e~~--tqG-LDgL~~R~~~Y~~~GarFAKWRsVikI~  194 (399)
T PLN02227        125 QSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGS--YDESW--CQG-LDGLASRTAAYYQQGARFAKWRTVVSIP  194 (399)
T ss_pred             CcCcCCcCHHHHHHHCCCeeeEEcCCCcccCCCC--CCCcc--CCC-hHHHHHHHHHHHHcCCceeehheeeccC
Confidence            33556    9999999999 99888888887765  22111  233 99999999999865  567999988763


No 22 
>PF11446 DUF2897:  Protein of unknown function (DUF2897);  InterPro: IPR021550  This is a bacterial family of uncharacterised proteins. 
Probab=27.28  E-value=68  Score=23.70  Aligned_cols=20  Identities=25%  Similarity=0.632  Sum_probs=15.7

Q ss_pred             cchHHHHHHHHHHHHHHHHH
Q 014340          400 TPWASISVIAAVILLLLTSI  419 (426)
Q Consensus       400 npW~~is~vaA~~ll~lt~~  419 (426)
                      +||.+|.++.|+++-=++++
T Consensus         4 ~~wlIIviVlgvIigNia~L   23 (55)
T PF11446_consen    4 NPWLIIVIVLGVIIGNIAAL   23 (55)
T ss_pred             hhhHHHHHHHHHHHhHHHHH
Confidence            69999999988877655554


No 23 
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=26.98  E-value=55  Score=31.18  Aligned_cols=36  Identities=14%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             CCcceeeecCcccccCCCCCceeeecccCCCchhhhhHHHHHHH
Q 014340           35 ARECSIYRVPETTRCSNPTPRIVSIGPFHHGKEELKAMEEHKKR   78 (426)
Q Consensus        35 ~~~~~I~rVP~~lr~~n~~P~~VSIGPyHhg~~~L~~mE~~K~~   78 (426)
                      +..-|++++|-.+        .+|+||||-.++.-..||+|=-.
T Consensus        22 sp~sclv~~t~dl--------hlalaP~yl~npl~~~i~ehld~   57 (253)
T KOG4134|consen   22 SPESCLVCITTDL--------HLALAPYYLANPLHALIEEHLDT   57 (253)
T ss_pred             CCcceEEEeeehe--------eeeecchhhcchhHHHHHHHhhH
Confidence            4456899999875        79999999887754456665433


No 24 
>PF05957 DUF883:  Bacterial protein of unknown function (DUF883);  InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD. 
Probab=26.10  E-value=68  Score=25.88  Aligned_cols=21  Identities=29%  Similarity=0.619  Sum_probs=14.1

Q ss_pred             cccchHHHHHHHHHHHHHHHHH
Q 014340          398 FNTPWASISVIAAVILLLLTSI  419 (426)
Q Consensus       398 f~npW~~is~vaA~~ll~lt~~  419 (426)
                      =.|||..+++.++ +++++.++
T Consensus        70 ~e~P~~svgiAag-vG~llG~L   90 (94)
T PF05957_consen   70 RENPWQSVGIAAG-VGFLLGLL   90 (94)
T ss_pred             HHChHHHHHHHHH-HHHHHHHH
Confidence            3689999987666 45555443


No 25 
>PLN02455 fructose-bisphosphate aldolase
Probab=25.47  E-value=90  Score=31.73  Aligned_cols=58  Identities=24%  Similarity=0.382  Sum_probs=41.7

Q ss_pred             HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhhccc
Q 014340          334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATLKQN  396 (426)
Q Consensus       334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l~~~  396 (426)
                      |++|+++||| ++.=|+-+..+-..  .+...  -.. ++++.+...+||..  +..+||+.++-.
T Consensus        90 ~~~L~~~GIvPGIKVDkGl~~l~g~--~ge~~--t~G-LDgL~~R~~~y~~~GarFAKWRsVikI~  150 (358)
T PLN02455         90 VDVLKENGVLPGIKVDKGTVELAGT--NGETT--TQG-LDGLGARCAKYYEAGARFAKWRAVLKIG  150 (358)
T ss_pred             HHHHHHCCCeeeEEecCCccccCCC--CCCcc--Ccc-hHHHHHHHHHHHhcCCceeeceeeeecC
Confidence            8999999999 88877776666421  12111  223 89999999999865  567999887654


No 26 
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa.   Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes.  It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane.  The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome.  Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform.  Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=25.17  E-value=72  Score=25.81  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=20.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHH
Q 014340          400 TPWASISVIAAVILLLLTSIQTVC  423 (426)
Q Consensus       400 npW~~is~vaA~~ll~lt~~QTv~  423 (426)
                      +-|+.||+++|+-+++++.+.|+.
T Consensus        14 ~~WkkiS~~va~P~v~l~~~n~y~   37 (86)
T cd00925          14 ELWKKISFYVALPAVALCMLNAYL   37 (86)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHh
Confidence            458899999999888888888775


No 27 
>KOG1557 consensus Fructose-biphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.60  E-value=35  Score=33.94  Aligned_cols=55  Identities=22%  Similarity=0.367  Sum_probs=37.8

Q ss_pred             HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhh
Q 014340          334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATL  393 (426)
Q Consensus       334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l  393 (426)
                      |++|+++||+ +..=|+-+..|.-.-.....     .-++++-..-..||..  +..+|++.+
T Consensus        94 ~~~L~~~givpGIKvDKG~vplaGt~~E~tt-----qGLD~L~~Rca~y~k~Ga~FAKWR~vl  151 (363)
T KOG1557|consen   94 VDLLKEKGIVPGIKVDKGLVPLAGTNGETTT-----QGLDGLAERCAQYYKDGARFAKWRAVL  151 (363)
T ss_pred             HHHHHhcCCccceEecCCcccccccCCccee-----echhhHHHHHHHHHHcCCchhheeEEE
Confidence            7899999999 88888888777744333322     1255566666677764  678998855


No 28 
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=20.95  E-value=91  Score=29.48  Aligned_cols=19  Identities=21%  Similarity=0.838  Sum_probs=12.7

Q ss_pred             ccc-chHHHHHHHHHHHHHH
Q 014340          398 FNT-PWASISVIAAVILLLL  416 (426)
Q Consensus       398 f~n-pW~~is~vaA~~ll~l  416 (426)
                      |++ ||.++++++.++++++
T Consensus       175 ~~~~~W~i~~~~~i~~i~~i  194 (215)
T PHA02947        175 YSNKPWFIVGVVIILIIFVI  194 (215)
T ss_pred             cCCCchHHHHHHHHHHHHHH
Confidence            466 9999966665555444


Done!