Query 014340
Match_columns 426
No_of_seqs 156 out of 683
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:48:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qap_A Fructose-1,6-bisphospha 20.8 17 0.00059 35.9 -0.5 95 321-420 106-208 (391)
2 1v54_G Cytochrome C oxidase po 15.7 92 0.0031 24.0 2.6 24 400-423 14-37 (85)
3 3mbd_A Fructose-bisphosphate a 15.7 33 0.0011 33.3 0.1 79 334-420 92-174 (342)
4 3bv4_A Fructose-bisphosphate a 14.5 35 0.0012 33.2 -0.1 81 334-420 91-175 (341)
5 2pc4_A 41 kDa antigen, fructos 14.4 34 0.0012 33.6 -0.2 81 334-420 100-186 (369)
6 2l27_B Peptide agonist; CRF, E 13.7 29 0.00099 22.5 -0.6 21 289-310 1-21 (38)
7 1bc8_C SAP-1, protein (SAP-1 E 13.6 2.1E+02 0.0071 22.4 4.2 52 323-385 10-70 (93)
8 2y69_G Cytochrome C oxidase po 12.8 1.2E+02 0.004 24.0 2.5 24 400-423 26-49 (97)
9 2iqt_A Fructose-bisphosphate a 12.0 76 0.0026 30.2 1.4 79 333-420 90-170 (296)
10 1yo5_C SAM pointed domain cont 11.5 1.5E+02 0.005 23.4 2.8 34 347-385 45-78 (97)
No 1
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=20.82 E-value=17 Score=35.88 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=56.7
Q ss_pred HHHHHhhcCChhh----HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhh
Q 014340 321 IIMMDYLVNTPKD----AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATL 393 (426)
Q Consensus 321 v~fM~~LI~t~eD----V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l 393 (426)
+.|=.-|-.+..| |++|+++||| ++.=|+-+..+.++--.... -.. ++++.+...+|+.- |+.+|++.+
T Consensus 106 ILFeETl~Qk~~dG~pf~~~L~~kGIvPGIKVDkGl~pl~~G~~~e~~---tqG-LDgL~eR~a~y~~~Ga~FAKWRsVi 181 (391)
T 2qap_A 106 ILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQM---TEG-LDGYVKRASAYYKKGCRFCKWRNVY 181 (391)
T ss_dssp EECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEE---ECC-CTTHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EcchHhccCcCcCCcCHHHHHHHCCCeeEEEecCCcccccCCCCCCcc---CCC-hhHHHHHHHHHHhcCCcceeeeeEE
Confidence 3344444444566 9999999999 88777766655533211111 122 77788888889864 677999887
Q ss_pred cc-cccccchHHHHHHHHHHHHHHHHHH
Q 014340 394 KQ-NYFNTPWASISVIAAVILLLLTSIQ 420 (426)
Q Consensus 394 ~~-~yf~npW~~is~vaA~~ll~lt~~Q 420 (426)
+- +...|+ ..|...|..+.=...+.|
T Consensus 182 ki~~~~PS~-~aI~~na~~LArYA~icQ 208 (391)
T 2qap_A 182 KIQNGTVSE-SAVRFNAETLARYAILSQ 208 (391)
T ss_dssp CCBTTBCCH-HHHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCH-HHHHHHHHHHHHHHHHHH
Confidence 65 344443 344444444444444444
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=15.72 E-value=92 Score=24.03 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 014340 400 TPWASISVIAAVILLLLTSIQTVC 423 (426)
Q Consensus 400 npW~~is~vaA~~ll~lt~~QTv~ 423 (426)
+-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999998888888887753
No 3
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=15.71 E-value=33 Score=33.29 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhC--CchHHHHHhhcc-cccccchHHHHHHH
Q 014340 334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCK--LPWHKWKATLKQ-NYFNTPWASISVIA 409 (426)
Q Consensus 334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~--~~w~~w~a~l~~-~yf~npW~~is~va 409 (426)
|++|+++||| ++.=|+-+..+ ..+.... .. ++++.+...+|+. -+..+|++.++- +...|+- .|-..|
T Consensus 92 ~~~L~~kGIvpGIKVDkG~~pl----~~ge~~t--qG-LDgL~eR~a~y~~~Ga~FAKWR~Vlki~~~~PS~~-aI~ena 163 (342)
T 3mbd_A 92 TELLKKKGIEIGIKLDKGLIDY----KEKEKIS--VG-LEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSED-CINENC 163 (342)
T ss_dssp HHHHHHTTCEEEEECCCCEEEE----TTTEEEE--CC-GGGHHHHHTCGGGTTCCEEEEEEEECCBTTBSCHH-HHHHHH
T ss_pred HHHHHHCCCeeEEecCCCCcCC----CCCCccc--cc-hHHHHHHHHHHHhcCCceeeeeeEEecCCCCCCHH-HHHHHH
Confidence 6899999999 88777766655 2333221 23 8888889988886 456789887754 3444543 333334
Q ss_pred HHHHHHHHHHH
Q 014340 410 AVILLLLTSIQ 420 (426)
Q Consensus 410 A~~ll~lt~~Q 420 (426)
..+.=...+.|
T Consensus 164 ~~LarYA~icQ 174 (342)
T 3mbd_A 164 SILAKYAIICQ 174 (342)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444444
No 4
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=14.51 E-value=35 Score=33.21 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=48.6
Q ss_pred HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCC--chHHHHHhhcc-cccccchHHHHHHH
Q 014340 334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKL--PWHKWKATLKQ-NYFNTPWASISVIA 409 (426)
Q Consensus 334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~--~w~~w~a~l~~-~yf~npW~~is~va 409 (426)
|++|+++||| ++.=|+-+..+. +- .+-.. -.. ++++.+...+|+.- |+.+|++.++- +...|+- .|...|
T Consensus 91 ~~~L~~~GIvPgIKVDkGl~pl~-G~-~~e~~--t~G-LDgL~eR~~~y~~~Ga~FAKWR~Viki~~~~PS~~-aI~~na 164 (341)
T 3bv4_A 91 PQVIKSKGGVVGIKVDKGVVPLA-GT-NGETT--TQG-LVGLSERCAQYKKDGADFAKWRCVLKIGEHTPSAL-AIMENA 164 (341)
T ss_dssp HHHHHTTTCEEEEECCCCEEECT-TS-SSCEE--ECC-CTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCHH-HHHHHH
T ss_pred HHHHHHCCCceEEEcCCCcCcCC-CC-CCCcC--CCC-hhHHHHHHHHHHhcCCcceeeeeEEecCCCCCCHH-HHHHHH
Confidence 7889999999 877776555443 11 11111 123 77888888889864 67789987764 3444543 344444
Q ss_pred HHHHHHHHHHH
Q 014340 410 AVILLLLTSIQ 420 (426)
Q Consensus 410 A~~ll~lt~~Q 420 (426)
..+.=...+.|
T Consensus 165 ~~LaryA~icQ 175 (341)
T 3bv4_A 165 NVLARYASICQ 175 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 5
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structu genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Probab=14.41 E-value=34 Score=33.58 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=50.6
Q ss_pred HHHHHhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhC--CchHHHHHhhcc-c--ccccchHHHHH
Q 014340 334 AELLVQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCK--LPWHKWKATLKQ-N--YFNTPWASISV 407 (426)
Q Consensus 334 V~lL~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~--~~w~~w~a~l~~-~--yf~npW~~is~ 407 (426)
|++|+++||| ++.=|+-+..+.+ +.+-.. -.. ++++.+...+|+. .|+.+|++.++- + ...+ ...|..
T Consensus 100 ~~~L~~kGIvPGIKVDkGl~pl~g--~~~e~~--tqG-LDgL~eR~a~y~~~Ga~FAKWR~Viki~~~~~~PS-~~aI~~ 173 (369)
T 2pc4_A 100 VNLLHNENIIPGIKVDKGLVNIPC--TDEEKS--TQG-LDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPT-DLSIHE 173 (369)
T ss_dssp HHHHHHHTCEEEEECCCCEEECTT--SSSCEE--ECC-CTTHHHHHHHHHHHTCCEEEEEEEECCBGGGTBSC-HHHHHH
T ss_pred HHHHHHCCCceEEEcCCCcccCCC--CCCCcC--CCC-hhhHHHHHHHHHhCCCCeeeeeEEEEecCCCCCCc-HHHHHH
Confidence 7889999999 8887776666654 222211 123 7778888888875 467789887764 2 3433 444544
Q ss_pred HHHHHHHHHHHHH
Q 014340 408 IAAVILLLLTSIQ 420 (426)
Q Consensus 408 vaA~~ll~lt~~Q 420 (426)
.|..+.=...+.|
T Consensus 174 na~~LArYA~icQ 186 (369)
T 2pc4_A 174 TAWGLARYASICQ 186 (369)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4544444444544
No 6
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=13.69 E-value=29 Score=22.52 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=15.9
Q ss_pred CeEEeeccchhhhccHHHHHHh
Q 014340 289 PFLTVYGATERLYRNVLAFEMM 310 (426)
Q Consensus 289 P~l~id~~T~~llrNLiA~Eq~ 310 (426)
||+.|| -|.-+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 667776 678999999877644
No 7
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=13.63 E-value=2.1e+02 Score=22.38 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHhhcCChhhHHHHHhcCcc-ccC--------CCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCCc
Q 014340 323 MMDYLVNTPKDAELLVQNEIM-GLG--------YTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKLP 385 (426)
Q Consensus 323 fM~~LI~t~eDV~lL~~kGIi-~lg--------sdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~~ 385 (426)
|+-.|...++ ..++| |.+ +.++||+++-.--..- ..-|.++.+.+.-||++.
T Consensus 10 FL~~LL~d~~------~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~-----~MnYeklSRaLRyYY~~~ 70 (93)
T 1bc8_C 10 FLLQLLQKPQ------NKHMICWTSNDGQFKLLQAEEVARLWGIRKNKP-----NMNYDKLSRALRYYYVKN 70 (93)
T ss_dssp HHHHHTTCGG------GTTTSEECSSSSEEECTTHHHHHHHHHHHHTCT-----TCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcc------cCCceEEeCCCCEEEecCHHHHHHHHHhcCCCC-----CcCHHHHHHHHHHHHhcC
Confidence 4444554444 25777 544 6689999987432221 223999999999999754
No 8
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.80 E-value=1.2e+02 Score=24.03 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=18.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 014340 400 TPWASISVIAAVILLLLTSIQTVC 423 (426)
Q Consensus 400 npW~~is~vaA~~ll~lt~~QTv~ 423 (426)
+-|+-||+++|+=+++++.+.++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999888888888887763
No 9
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=11.98 E-value=76 Score=30.18 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=49.2
Q ss_pred hHHHH-HhcCcc-ccCCCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCCchHHHHHhhcccccccchHHHHHHHH
Q 014340 333 DAELL-VQNEIM-GLGYTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAA 410 (426)
Q Consensus 333 DV~lL-~~kGIi-~lgsdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~~w~~w~a~l~~~yf~npW~~is~vaA 410 (426)
=|++| +++||| ++.=|+-+..+.++-... ..-.. ++++.+...+|+..- .+|++.++-. | ...|...|.
T Consensus 90 ~~~~Lw~~kGIvpgIKVDkGl~pl~~G~~~e---~~tqG-LDgL~eR~~~y~~~G-AKWR~Vlki~---~-~~aI~~na~ 160 (296)
T 2iqt_A 90 TADFLWEKRHIVPFLKVDKGLQDEANGVQLM---KPFPE-LGKLCEEAVGYHVFG-TKMRSVIKQA---N-EQGIRDIVE 160 (296)
T ss_dssp HHHHHHHHHCCEEEEECCCCBCCCBTTEECB---CCCTT-HHHHHHHHHHTTCCE-EEEEEEECSC---C-HHHHHHHHH
T ss_pred hHHHHHHhCCCceEEEcCCCccccCCCCCCC---ccCCC-hhHHHHHHHHhccCC-CeeeeeeecC---c-hhHHHHHHH
Confidence 37889 999999 887776665554332211 11233 999999998888776 6888877553 3 444444444
Q ss_pred HHHHHHHHHH
Q 014340 411 VILLLLTSIQ 420 (426)
Q Consensus 411 ~~ll~lt~~Q 420 (426)
...=...+.|
T Consensus 161 ~laryA~icq 170 (296)
T 2iqt_A 161 QQFQWGKEIL 170 (296)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 10
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=11.54 E-value=1.5e+02 Score=23.43 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=25.0
Q ss_pred CCchHHHHHHhhccCCcccCCCCChHHHHHHHHhhhCCc
Q 014340 347 YTEAFPTLFHNLDNGCIINYSCFQYSGVVADLQAYCKLP 385 (426)
Q Consensus 347 sdeeva~lFn~L~~~~~~~~~~~y~~~v~~~ln~~~~~~ 385 (426)
+.++||+++-.-=..- ..-|.++.+.+.-||++.
T Consensus 45 d~~~VArlWG~rKnkp-----~MnYeklSRaLRyYY~~~ 78 (97)
T 1yo5_C 45 DSAQVARLWGIRKNRP-----AMNYDKLSRSIRQYYKKG 78 (97)
T ss_dssp CHHHHHHHHHHHHTCT-----TCCHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHhcCCCC-----CcCHHHHHHHHHHHHhcC
Confidence 6689999997442221 223999999999999874
Done!