BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014342
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 125/254 (49%), Gaps = 28/254 (11%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
++F+ +H Y+L+P S K+ D +L VK+AF L G+ PLWD K FVG+L+
Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
DFI IL + + ELE H I W+ LQ + K PLV P
Sbjct: 89 DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
SL + +++NK+ +P+I +G+ IL + LK F +
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
+ + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240
Query: 389 SRSDITALAKDKAY 402
S+ D+ LA +K Y
Sbjct: 241 SKFDVINLAAEKTY 254
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 124/260 (47%), Gaps = 23/260 (8%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
I +F+ + T Y++LP S ++ DV L VK + +L + PLWD +F G+L+
Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
DF+ +++ S+ E + ++ K +L R+++ P + P
Sbjct: 75 ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
SL + L + +++ +P+I G GS + I+ + + ILK I + K ++ +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
+ P++ + +GTW A + + +L + ++S++PIV+ +LL++
Sbjct: 181 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 231
Query: 388 YSRSDITALAKDKAYAQIHL 407
Y D+ L +D Y+ + L
Sbjct: 232 YESVDVMHLIQDGDYSNLDL 251
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 124/260 (47%), Gaps = 23/260 (8%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
I +F+ + T Y++LP S ++ DV L VK + +L + PLWD +F G+L+
Sbjct: 14 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
DF+ +++ S+ E + ++ K +L R+++ P + P
Sbjct: 74 ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
SL + L + +++ +P+I G GS + I+ + + ILK I + K ++ +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
+ P++ + +GTW A + + +L + ++S++PIV+ +LL++
Sbjct: 180 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 230
Query: 388 YSRSDITALAKDKAYAQIHL 407
Y D+ L +D Y+ + L
Sbjct: 231 YESVDVMHLIQDGDYSNLDL 250
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 54/280 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
QL+ + I FL++ T Y++LP S ++ LD +L VK++ +VL + + PLWD RF
Sbjct: 17 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
G+L+ DFI +++ +N EL V KLQL +++R Q+D
Sbjct: 77 AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
RPL +A LK+L+++ +P+I + ++ + + ILK
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
+ CR HF L+ P+ + + I + N + M P + + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
Q VSS+PI+D+N L+++Y D+ L K Y + L
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 256
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 54/280 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
QL+ + I FL++ T Y++LP S ++ LD +L VK++ +VL + + PLWD RF
Sbjct: 10 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
G+L+ DFI +++ +N EL V KLQL +++R Q+D
Sbjct: 70 AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
RPL +A LK+L+++ +P+I + ++ + + ILK
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
+ CR HF L+ P+ + + I + N + M P + + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
Q VSS+PI+D+N L+++Y D+ L K Y + L
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 249
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 76.6 bits (187), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P F W GG+ V LSGSF WS+ +P++ S+ F I LP G HQYKF+VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82 HDENQPHVSGNYGVVNCVYIAVPQPD 107
HD ++P V+ G VN + I V + D
Sbjct: 68 HDPSEPIVTSQLGTVNNI-IQVKKTD 92
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 75.5 bits (184), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P F W GG+ V LSGSF WS+ +P + S+ F I LP G HQYKF+VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82 HDENQPHVSGNYGVVNCVYIAVPQPD 107
HD ++P V+ G VN + I V + D
Sbjct: 68 HDPSEPIVTSQLGTVNNI-IQVKKTD 92
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P W GG+ V +SGSF WS +P+ S F I LP G HQYKF+VDG+W
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHN---DFVAILDLPEGEHQYKFFVDGQWV 67
Query: 82 HDENQPHVSGNYGVVN 97
HD ++P V+ G +N
Sbjct: 68 HDPSEPVVTSQLGTIN 83
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
S++VPV W GG +V ++GSFT+W + + + P F + RL PG H+++F VD
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78 GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
E R + P + G VN YI V QP+ P E + E D MRP +
Sbjct: 61 NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
+ + + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++D
Sbjct: 16 MSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 66
Query: 387 IYSRSDITALAKDKAY 402
IYS+ D+ LA +K Y
Sbjct: 67 IYSKFDVINLAAEKTY 82
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
+ + + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++D
Sbjct: 16 MSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 66
Query: 387 IYSRSDITALAKDKAY 402
IYS+ D+ LA +K Y
Sbjct: 67 IYSKFDVINLAAEKTY 82
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
+L + + LV+A+V + +VD+ND + I S SDI
Sbjct: 111 TLETIINRLVEAEVHQLVVVDENDVVKGIVSLSDI 145
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
+ + + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++D
Sbjct: 16 MSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 66
Query: 387 IYSRSDITALAKDKAY 402
IYS+ D+ LA +K Y
Sbjct: 67 IYSKFDVINLAAEKTY 82
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29 NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
G RV +SG W + +P++ +G F I+ R LP G +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88 HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
+ N G N V P V T S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 353 MLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396
+++P+ S+ AL LLV+ V+ +P++DDN +L+ + S D+ AL
Sbjct: 18 VVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL 61
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 276
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 276 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335
K ++++ V P G+ L +S L+ + R + ++ L ++ V I+
Sbjct: 116 KARRDRLTKVAEEKKKNPKGTVSTKAPLCVVSG-LQEVTRTIEKKTARLVLIANNVDPIE 174
Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRS 391
L W+P + AN P+A+++ A LG A+ V+ + ++ + L +RS
Sbjct: 175 LVLWMPTLCRANKIPYAIVKDKARLGDAIGRKTATCVAFTDVNAEDQAALKNLTRS 230
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402
I + N + M P + + +L Q VSS+PI+D+N L+++Y D+ L K Y
Sbjct: 16 ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 403 AQIHL 407
+ L
Sbjct: 73 NDLSL 77
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 363 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
+ L Q VSS+PI+D+N L+++Y D+ L K Y + L
Sbjct: 33 VIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 77
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 337 GTWVPRIGE--ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394
G+ V +GE +++PT ++ AL LLV+ ++ P++D++ L+ + S D+
Sbjct: 1 GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 395 AL 396
AL
Sbjct: 61 AL 62
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 337 GTWVPRIGE--ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394
G+ V +GE +++PT ++ AL LLV+ ++ P++D++ L+ + S D+
Sbjct: 1 GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 395 AL 396
AL
Sbjct: 61 AL 62
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
+R + + ALAL Q ++ +P+VDD +L I S DIT D
Sbjct: 80 IREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
A L P SL A ++ ++ SIP+ D N+ LL + S S+ITA D
Sbjct: 17 IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
A L P SL A ++ ++ SIP+ D N+ LL + S S+ITA D
Sbjct: 14 IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 62
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 187 GLPMVPLWDDFKGRFVGVLSALDFIL---ILREL-GTNGSNLTEEE--LETHTISAWKVG 240
LP+V D +G VG++ D + I+R + T + +EEE LE+H ++
Sbjct: 159 ALPVV----DSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKF 214
Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
+LQL K R ++ A P+ ++ EVALK+ + + +P+I G ++
Sbjct: 215 ELQLPNK----PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG------DL 264
Query: 301 LYLASLSDILKCICR 315
+ L D+LK + +
Sbjct: 265 IGLIRDFDLLKVLVK 279
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 383 SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQV 415
+ D YS SD+TALAKD A I E+N+ QV
Sbjct: 219 KITDGYSGSDLTALAKDAALEPIR--ELNVEQV 249
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
+K + G +P+ + GR VG++++ DFI +L GS+ ++T +
Sbjct: 167 LKDVARTMVRNGFRRLPVVSE--GRLVGIITSTDFIKLL------GSDWAFNHMQTGNVR 218
Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
+++ +KR ++ A D LK++A ++ N + +P++
Sbjct: 219 EITNVRMEEIMKRD-----------VITAKEGDKLKKIAEIMVTNDIGALPVV 260
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316
R ++ A P + LK+VA +++N +P++ G + + +D +K +
Sbjct: 154 ITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVG-------IITSTDFIKLLGSD 206
Query: 317 --FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 374
F H + +++ T V R+ E R + L ++V D+ +
Sbjct: 207 WAFNHMQTG---------NVREITNV-RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGA 256
Query: 375 IPIVDDNDSLLDIYSRSDI 393
+P+VD+N + I + D+
Sbjct: 257 LPVVDENLRIKGIITEKDV 275
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 286 PIIHSTGPAG-----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340
P +H GP G + E L + HF H+ S + +P + + G W
Sbjct: 388 PGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPETEVATGGWR 447
Query: 341 PRIGEANGRPFAMLRPTAS 359
P P A L PT S
Sbjct: 448 PSARPGARAPHAWLTPTTS 466
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 286 PIIHSTGPAG-----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340
P +H GP G + E L + HF H+ S + +P + + G W
Sbjct: 388 PGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPETEVATGGWR 447
Query: 341 PRIGEANGRPFAMLRPTAS 359
P P A L PT S
Sbjct: 448 PSARPGARAPHAWLTPTTS 466
>pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
Subunit Complexed With Adpnp
Length = 390
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 46 PMPMSPSEGCPAVFQIICRLPPG----HHQYKF 74
P+ + P EG PAV I+CRL G + Y+F
Sbjct: 75 PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 107
>pdb|4A17|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 255
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 310 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
L I ++ + L ++ V I+L ++P++ N PFA ++ A+LG +
Sbjct: 129 LNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKTA 188
Query: 370 ADVSSIPIVDDNDSLLDIYS 389
V+ + +++ + L +S
Sbjct: 189 TAVALTEVRNEDKAKLQQFS 208
>pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HZ0|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery
And Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 213
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 46 PMPMSPSEGCPAVFQIICRLPPG----HHQYKF 74
P+ + P EG PAV I+CRL G + Y+F
Sbjct: 64 PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 96
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 400
S+ A +L++ +++ +PIVD++ L+ I + DI ALA++K
Sbjct: 19 SIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 61
>pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv
Co-Complexed With Inhibitor
pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv
Co-Complexed With Inhibitor
Length = 201
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 46 PMPMSPSEGCPAVFQIICRLPPG 68
P+ + P EG PAV I+CRL G
Sbjct: 61 PVDIHPEEGVPAVELILCRLHAG 83
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 400
S+ A +L++ +++ +PIVD++ L+ I + DI ALA++K
Sbjct: 21 SIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK 63
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 31/71 (43%)
Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395
+ T+V + + GR + P S+G A L + ++ + D + +L I++ D+
Sbjct: 22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81
Query: 396 LAKDKAYAQIH 406
+ A +
Sbjct: 82 AVAGQGAASLQ 92
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPM 47
G++ R +W R+S SGS RW +P+
Sbjct: 250 GAVCTHARSLWRLEPLRISWSGSHLRWGQPL 280
>pdb|1H04|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 28.1 bits (61), Expect = 9.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 36 LSGSFTRWSEPMPMSPSEGCPAVFQI 61
+SGS +WS+P+P CPA QI
Sbjct: 46 ISGSSVQWSDPLPECREIYCPAPPQI 71
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 56 PAVFQIICRLPPGHHQYKFYVDGEWR 81
P ++Q+ LP G +QYK +D W
Sbjct: 196 PNLYQLSGTLPAGTYQYKIALDHSWN 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,526,910
Number of Sequences: 62578
Number of extensions: 588533
Number of successful extensions: 1275
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 56
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)