Query 014342
Match_columns 426
No_of_seqs 394 out of 2816
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 99.9 1.8E-25 3.8E-30 222.5 19.8 250 144-420 55-306 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 4.1E-25 9E-30 171.6 9.7 79 20-101 1-79 (79)
3 COG3448 CBS-domain-containing 99.9 1.2E-23 2.6E-28 194.1 13.1 167 120-318 205-376 (382)
4 cd02861 E_set_proteins_like E 99.8 6.9E-19 1.5E-23 137.9 9.2 77 21-100 2-81 (82)
5 KOG1616 Protein involved in Sn 99.7 5E-17 1.1E-21 156.0 9.5 90 15-104 74-163 (289)
6 COG3448 CBS-domain-containing 99.7 7E-16 1.5E-20 143.0 13.8 175 200-400 199-374 (382)
7 COG2524 Predicted transcriptio 99.7 7.3E-16 1.6E-20 140.5 12.3 115 256-398 177-291 (294)
8 COG2524 Predicted transcriptio 99.6 3.1E-15 6.8E-20 136.4 12.5 121 154-314 171-291 (294)
9 cd04618 CBS_pair_5 The CBS dom 99.6 2.6E-14 5.6E-19 115.8 11.5 96 166-311 2-97 (98)
10 cd04618 CBS_pair_5 The CBS dom 99.6 3.1E-14 6.7E-19 115.4 11.7 95 260-395 2-97 (98)
11 cd04641 CBS_pair_28 The CBS do 99.5 9E-14 2E-18 116.3 13.4 118 260-395 2-119 (120)
12 KOG1764 5'-AMP-activated prote 99.5 4.1E-13 8.9E-18 134.1 18.8 199 165-400 162-361 (381)
13 PRK14869 putative manganese-de 99.5 3.1E-13 6.8E-18 142.5 18.9 215 155-399 68-305 (546)
14 cd04603 CBS_pair_KefB_assoc Th 99.5 1.8E-13 3.9E-18 113.0 12.0 108 261-395 3-110 (111)
15 cd04627 CBS_pair_14 The CBS do 99.5 3.5E-13 7.6E-18 113.3 12.7 120 260-394 2-121 (123)
16 cd04619 CBS_pair_6 The CBS dom 99.5 5.7E-13 1.2E-17 110.5 13.1 111 261-395 3-113 (114)
17 cd04617 CBS_pair_4 The CBS dom 99.5 4.5E-13 9.7E-18 111.8 12.2 113 260-395 2-117 (118)
18 COG3620 Predicted transcriptio 99.5 3.7E-13 8.1E-18 114.3 10.0 116 256-399 70-185 (187)
19 cd04630 CBS_pair_17 The CBS do 99.4 2.1E-12 4.6E-17 106.8 13.6 112 260-395 2-113 (114)
20 cd04614 CBS_pair_1 The CBS dom 99.4 1.6E-12 3.5E-17 104.7 12.2 94 260-395 2-95 (96)
21 cd04608 CBS_pair_PALP_assoc Th 99.4 8E-13 1.7E-17 111.7 9.8 112 260-396 3-123 (124)
22 cd04600 CBS_pair_HPP_assoc Thi 99.4 2.8E-12 6E-17 107.5 12.9 122 259-395 2-123 (124)
23 cd04607 CBS_pair_NTP_transfera 99.4 4E-12 8.6E-17 105.0 13.2 109 261-395 4-112 (113)
24 cd04605 CBS_pair_MET2_assoc Th 99.4 5.7E-12 1.2E-16 103.3 13.6 108 259-395 2-109 (110)
25 cd04801 CBS_pair_M50_like This 99.4 2.4E-12 5.1E-17 106.5 11.4 111 260-395 2-113 (114)
26 cd04639 CBS_pair_26 The CBS do 99.4 3.5E-12 7.6E-17 104.8 12.3 109 260-395 2-110 (111)
27 cd04641 CBS_pair_28 The CBS do 99.4 5.3E-12 1.1E-16 105.5 13.6 119 166-312 2-120 (120)
28 COG3620 Predicted transcriptio 99.4 7.4E-12 1.6E-16 106.4 13.9 121 154-314 64-184 (187)
29 cd04642 CBS_pair_29 The CBS do 99.4 4.7E-12 1E-16 106.9 12.6 123 260-395 2-125 (126)
30 cd04593 CBS_pair_EriC_assoc_ba 99.4 7.8E-12 1.7E-16 103.5 13.3 111 260-395 2-114 (115)
31 cd04623 CBS_pair_10 The CBS do 99.4 8.8E-12 1.9E-16 102.4 13.3 111 260-395 2-112 (113)
32 cd04624 CBS_pair_11 The CBS do 99.4 1E-11 2.3E-16 102.1 13.6 110 260-395 2-111 (112)
33 cd04643 CBS_pair_30 The CBS do 99.4 5.6E-12 1.2E-16 104.3 11.8 114 260-395 2-115 (116)
34 cd04620 CBS_pair_7 The CBS dom 99.4 9.5E-12 2.1E-16 102.9 13.1 109 261-395 3-114 (115)
35 cd04626 CBS_pair_13 The CBS do 99.4 8.8E-12 1.9E-16 102.4 12.3 109 260-395 2-110 (111)
36 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.2E-11 2.7E-16 100.6 13.0 104 260-395 2-105 (106)
37 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.1E-11 2.4E-16 101.7 12.8 109 260-395 2-110 (111)
38 cd04631 CBS_pair_18 The CBS do 99.4 8.8E-12 1.9E-16 104.6 12.4 119 260-395 2-124 (125)
39 cd04803 CBS_pair_15 The CBS do 99.4 1.1E-11 2.4E-16 103.5 12.8 118 260-395 2-121 (122)
40 cd04615 CBS_pair_2 The CBS dom 99.4 1.4E-11 3E-16 101.5 12.9 110 261-395 3-112 (113)
41 COG2905 Predicted signal-trans 99.4 6E-12 1.3E-16 126.6 12.6 117 257-399 155-271 (610)
42 PRK10892 D-arabinose 5-phospha 99.4 8.3E-12 1.8E-16 123.3 13.6 114 257-396 208-323 (326)
43 cd04588 CBS_pair_CAP-ED_DUF294 99.4 1.9E-11 4.2E-16 100.1 13.6 108 260-395 2-109 (110)
44 cd04603 CBS_pair_KefB_assoc Th 99.4 9.6E-12 2.1E-16 102.6 11.8 110 166-312 2-111 (111)
45 PRK11543 gutQ D-arabinose 5-ph 99.4 9.2E-12 2E-16 122.7 13.8 113 257-395 203-317 (321)
46 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.5E-11 3.3E-16 100.9 12.7 109 260-395 2-110 (111)
47 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.4E-11 5.3E-16 99.6 13.3 108 259-395 2-109 (110)
48 cd04586 CBS_pair_BON_assoc Thi 99.3 1.2E-11 2.7E-16 105.6 11.8 118 259-395 2-134 (135)
49 cd04587 CBS_pair_CAP-ED_DUF294 99.3 2.7E-11 5.9E-16 99.6 13.4 111 260-395 2-112 (113)
50 COG0517 FOG: CBS domain [Gener 99.3 2.2E-11 4.8E-16 100.7 12.9 110 258-394 6-117 (117)
51 cd04617 CBS_pair_4 The CBS dom 99.3 2.4E-11 5.3E-16 101.3 13.1 114 166-311 2-117 (118)
52 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2.5E-11 5.3E-16 99.5 12.9 109 260-395 2-110 (111)
53 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.8E-11 3.9E-16 100.2 12.0 105 260-395 3-107 (108)
54 cd04629 CBS_pair_16 The CBS do 99.3 1.9E-11 4.1E-16 100.8 12.2 112 260-395 2-113 (114)
55 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.2E-11 6.9E-16 98.8 13.4 109 260-395 2-110 (111)
56 cd04633 CBS_pair_20 The CBS do 99.3 1.8E-11 3.8E-16 102.2 11.9 116 260-395 2-120 (121)
57 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.3E-11 4.9E-16 100.2 12.4 111 260-395 3-113 (114)
58 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2.5E-11 5.4E-16 101.0 12.8 117 260-395 2-121 (122)
59 cd04621 CBS_pair_8 The CBS dom 99.3 2.3E-11 4.9E-16 104.4 12.8 116 261-395 3-134 (135)
60 cd04636 CBS_pair_23 The CBS do 99.3 2E-11 4.4E-16 103.9 12.2 117 260-395 2-131 (132)
61 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 4.3E-11 9.4E-16 97.7 13.4 106 260-395 3-108 (109)
62 PRK07107 inosine 5-monophospha 99.3 1.7E-11 3.6E-16 126.7 13.2 111 262-396 108-218 (502)
63 cd04637 CBS_pair_24 The CBS do 99.3 3.3E-11 7.2E-16 100.7 12.7 117 260-395 2-121 (122)
64 PLN02274 inosine-5'-monophosph 99.3 2.6E-11 5.7E-16 125.4 14.5 118 257-399 106-223 (505)
65 cd04642 CBS_pair_29 The CBS do 99.3 2.6E-11 5.7E-16 102.3 12.0 125 166-312 2-126 (126)
66 cd04602 CBS_pair_IMPDH_2 This 99.3 4.2E-11 9.1E-16 99.1 12.9 109 260-395 3-113 (114)
67 PRK15094 magnesium/cobalt effl 99.3 7E-11 1.5E-15 114.5 16.3 171 145-367 55-227 (292)
68 cd04625 CBS_pair_12 The CBS do 99.3 4.5E-11 9.7E-16 98.3 12.9 109 261-395 3-111 (112)
69 cd04622 CBS_pair_9 The CBS dom 99.3 5E-11 1.1E-15 98.1 13.0 110 260-395 2-112 (113)
70 cd04589 CBS_pair_CAP-ED_DUF294 99.3 5E-11 1.1E-15 97.9 13.0 109 260-395 2-110 (111)
71 cd04635 CBS_pair_22 The CBS do 99.3 3E-11 6.5E-16 100.9 11.8 118 260-395 2-121 (122)
72 cd04619 CBS_pair_6 The CBS dom 99.3 7.4E-11 1.6E-15 97.7 14.1 112 166-311 2-113 (114)
73 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 3.7E-11 7.9E-16 98.8 12.0 111 260-395 2-113 (114)
74 cd04640 CBS_pair_27 The CBS do 99.3 3.6E-11 7.9E-16 101.5 12.2 114 260-395 2-125 (126)
75 TIGR03520 GldE gliding motilit 99.3 8E-11 1.7E-15 119.4 16.7 161 152-367 188-348 (408)
76 cd02858 Esterase_N_term Estera 99.3 1.7E-11 3.7E-16 96.6 9.2 75 22-99 7-83 (85)
77 cd04627 CBS_pair_14 The CBS do 99.3 7.3E-11 1.6E-15 99.1 13.1 120 166-310 2-121 (123)
78 PRK07807 inosine 5-monophospha 99.3 4.3E-11 9.3E-16 123.0 14.0 113 257-400 95-207 (479)
79 cd04609 CBS_pair_PALP_assoc2 T 99.3 5.3E-11 1.1E-15 97.2 11.8 108 260-395 2-109 (110)
80 cd04632 CBS_pair_19 The CBS do 99.3 6E-11 1.3E-15 100.2 12.4 118 260-395 2-127 (128)
81 cd04802 CBS_pair_3 The CBS dom 99.3 1.2E-10 2.5E-15 95.8 13.4 110 260-395 2-111 (112)
82 PRK10892 D-arabinose 5-phospha 99.3 5.5E-11 1.2E-15 117.5 13.4 124 153-312 200-323 (326)
83 cd04630 CBS_pair_17 The CBS do 99.3 2E-10 4.4E-15 94.9 14.8 112 166-311 2-113 (114)
84 cd04610 CBS_pair_ParBc_assoc T 99.2 1.7E-10 3.7E-15 93.9 12.9 105 259-395 2-106 (107)
85 PRK15094 magnesium/cobalt effl 99.2 1.1E-10 2.4E-15 113.1 13.0 121 257-404 73-195 (292)
86 cd04599 CBS_pair_GGDEF_assoc2 99.2 1.9E-10 4E-15 93.3 12.3 102 260-394 2-103 (105)
87 cd04614 CBS_pair_1 The CBS dom 99.2 1.9E-10 4E-15 92.6 12.2 94 166-311 2-95 (96)
88 cd04601 CBS_pair_IMPDH This cd 99.2 1.5E-10 3.2E-15 94.7 11.5 106 260-395 3-109 (110)
89 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 1.8E-10 4E-15 118.2 14.8 112 257-400 94-205 (475)
90 PTZ00314 inosine-5'-monophosph 99.2 1.1E-10 2.5E-15 120.7 13.1 116 257-397 102-217 (495)
91 cd04594 CBS_pair_EriC_assoc_ar 99.2 2.5E-10 5.3E-15 92.9 12.4 100 262-395 4-103 (104)
92 PRK05567 inosine 5'-monophosph 99.2 1.5E-09 3.2E-14 112.7 21.1 172 158-394 90-263 (486)
93 TIGR00400 mgtE Mg2+ transporte 99.2 7.8E-11 1.7E-15 121.2 11.5 180 145-397 119-305 (449)
94 cd02205 CBS_pair The CBS domai 99.2 4.8E-10 1E-14 91.0 13.6 111 260-395 2-112 (113)
95 PRK01862 putative voltage-gate 99.2 1.7E-10 3.8E-15 122.4 13.9 118 257-399 453-572 (574)
96 TIGR01302 IMP_dehydrog inosine 99.2 1.7E-10 3.7E-15 118.5 13.3 116 257-398 86-201 (450)
97 cd04584 CBS_pair_ACT_assoc Thi 99.2 3.1E-10 6.7E-15 94.5 12.5 117 260-395 2-120 (121)
98 cd04590 CBS_pair_CorC_HlyC_ass 99.2 5.1E-10 1.1E-14 91.7 13.5 109 166-311 2-110 (111)
99 cd04623 CBS_pair_10 The CBS do 99.2 6.1E-10 1.3E-14 91.3 13.9 111 166-311 2-112 (113)
100 PRK07807 inosine 5-monophospha 99.2 1.1E-09 2.3E-14 112.7 18.7 182 149-400 83-265 (479)
101 cd04632 CBS_pair_19 The CBS do 99.2 5.4E-10 1.2E-14 94.3 13.6 125 166-311 2-127 (128)
102 cd04600 CBS_pair_HPP_assoc Thi 99.2 3E-10 6.6E-15 95.1 11.9 122 165-311 2-123 (124)
103 cd04634 CBS_pair_21 The CBS do 99.2 4.3E-10 9.4E-15 97.3 13.0 126 260-395 2-142 (143)
104 cd04606 CBS_pair_Mg_transporte 99.2 2.8E-10 6E-15 93.3 11.1 102 264-396 2-108 (109)
105 cd04631 CBS_pair_18 The CBS do 99.2 5.2E-10 1.1E-14 93.8 12.8 121 166-311 2-124 (125)
106 cd04598 CBS_pair_GGDEF_assoc T 99.2 3.6E-10 7.8E-15 93.9 11.7 113 260-395 2-118 (119)
107 PRK05567 inosine 5'-monophosph 99.2 1.1E-09 2.4E-14 113.7 17.6 113 257-398 93-205 (486)
108 cd04643 CBS_pair_30 The CBS do 99.2 5.6E-10 1.2E-14 92.2 12.5 114 166-311 2-115 (116)
109 cd04608 CBS_pair_PALP_assoc Th 99.2 2.6E-10 5.7E-15 96.3 10.5 113 166-313 3-124 (124)
110 cd04803 CBS_pair_15 The CBS do 99.2 6.6E-10 1.4E-14 92.7 12.9 120 166-311 2-121 (122)
111 cd04607 CBS_pair_NTP_transfera 99.2 8.6E-10 1.9E-14 90.9 13.3 110 166-311 3-112 (113)
112 cd04591 CBS_pair_EriC_assoc_eu 99.2 6.1E-10 1.3E-14 91.1 12.2 101 261-395 4-104 (105)
113 cd04593 CBS_pair_EriC_assoc_ba 99.1 7.6E-10 1.6E-14 91.5 12.9 112 167-311 3-114 (115)
114 PRK11543 gutQ D-arabinose 5-ph 99.1 3.7E-10 8.1E-15 111.3 12.9 123 154-312 196-318 (321)
115 TIGR03520 GldE gliding motilit 99.1 4.5E-10 9.7E-15 114.0 13.6 118 256-402 196-315 (408)
116 cd04605 CBS_pair_MET2_assoc Th 99.1 7.7E-10 1.7E-14 90.5 12.5 108 165-311 2-109 (110)
117 COG2905 Predicted signal-trans 99.1 3.9E-10 8.5E-15 113.8 12.6 123 156-316 150-272 (610)
118 cd04636 CBS_pair_23 The CBS do 99.1 7.5E-10 1.6E-14 94.1 12.7 127 166-312 2-132 (132)
119 cd04801 CBS_pair_M50_like This 99.1 5.5E-10 1.2E-14 92.2 11.5 111 166-311 2-113 (114)
120 TIGR00393 kpsF KpsF/GutQ famil 99.1 4.1E-10 8.8E-15 108.1 12.2 107 257-389 161-268 (268)
121 PRK01862 putative voltage-gate 99.1 5.5E-10 1.2E-14 118.6 14.2 132 149-315 441-572 (574)
122 cd04633 CBS_pair_20 The CBS do 99.1 1.1E-09 2.3E-14 91.3 13.0 118 166-311 2-120 (121)
123 cd04595 CBS_pair_DHH_polyA_Pol 99.1 1.5E-09 3.2E-14 88.9 13.6 108 165-311 2-109 (110)
124 cd04589 CBS_pair_CAP-ED_DUF294 99.1 1.1E-09 2.5E-14 89.8 12.9 110 166-312 2-111 (111)
125 cd04639 CBS_pair_26 The CBS do 99.1 9.8E-10 2.1E-14 90.1 12.4 109 166-311 2-110 (111)
126 cd04637 CBS_pair_24 The CBS do 99.1 1.9E-09 4E-14 90.1 14.3 121 166-312 2-122 (122)
127 cd04586 CBS_pair_BON_assoc Thi 99.1 7.2E-10 1.6E-14 94.6 11.8 127 165-311 2-134 (135)
128 cd04615 CBS_pair_2 The CBS dom 99.1 1.8E-09 3.9E-14 88.8 13.5 110 167-311 3-112 (113)
129 cd04629 CBS_pair_16 The CBS do 99.1 1E-09 2.2E-14 90.3 12.0 112 166-311 2-113 (114)
130 cd04621 CBS_pair_8 The CBS dom 99.1 1.6E-09 3.6E-14 92.8 13.5 124 166-311 2-134 (135)
131 cd04613 CBS_pair_SpoIVFB_EriC_ 99.1 1.5E-09 3.2E-14 89.1 12.8 112 166-311 2-113 (114)
132 cd04800 CBS_pair_CAP-ED_DUF294 99.1 2E-09 4.4E-14 88.2 13.5 109 166-311 2-110 (111)
133 cd04626 CBS_pair_13 The CBS do 99.1 2E-09 4.4E-14 88.2 13.1 109 166-311 2-110 (111)
134 cd04585 CBS_pair_ACT_assoc2 Th 99.1 1.9E-09 4.1E-14 89.5 12.9 120 166-311 2-121 (122)
135 TIGR01302 IMP_dehydrog inosine 99.1 3.7E-09 8E-14 108.7 17.7 115 158-313 83-200 (450)
136 cd04588 CBS_pair_CAP-ED_DUF294 99.1 2.9E-09 6.3E-14 87.1 13.8 108 166-311 2-109 (110)
137 TIGR00400 mgtE Mg2+ transporte 99.1 9.6E-10 2.1E-14 113.1 13.0 114 256-400 136-254 (449)
138 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 3.1E-09 6.6E-14 86.9 13.6 109 166-311 2-110 (111)
139 cd04582 CBS_pair_ABC_OpuCA_ass 99.1 1.4E-09 3.1E-14 88.3 11.5 104 166-311 2-105 (106)
140 cd04640 CBS_pair_27 The CBS do 99.1 1.9E-09 4.2E-14 90.9 12.2 116 166-311 2-125 (126)
141 cd04591 CBS_pair_EriC_assoc_eu 99.1 2.6E-09 5.7E-14 87.3 12.5 100 166-311 3-104 (105)
142 cd04620 CBS_pair_7 The CBS dom 99.1 2.9E-09 6.2E-14 87.9 12.8 110 166-311 2-114 (115)
143 cd04635 CBS_pair_22 The CBS do 99.1 2.1E-09 4.6E-14 89.6 12.0 120 166-311 2-121 (122)
144 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 3.7E-09 8E-14 86.4 13.0 109 166-311 2-110 (111)
145 cd04596 CBS_pair_DRTGG_assoc T 99.1 3.2E-09 7E-14 86.8 12.6 105 166-311 3-107 (108)
146 cd04592 CBS_pair_EriC_assoc_eu 99.1 3.3E-09 7.1E-14 90.9 12.8 113 166-290 2-117 (133)
147 cd04802 CBS_pair_3 The CBS dom 99.0 7.5E-09 1.6E-13 84.9 14.4 110 166-311 2-111 (112)
148 PRK07107 inosine 5-monophospha 99.0 3.9E-09 8.4E-14 109.2 15.5 132 136-313 84-219 (502)
149 cd04587 CBS_pair_CAP-ED_DUF294 99.0 6.6E-09 1.4E-13 85.3 13.9 111 166-311 2-112 (113)
150 cd04583 CBS_pair_ABC_OpuCA_ass 99.0 5.9E-09 1.3E-13 84.9 13.4 106 166-311 3-108 (109)
151 COG0517 FOG: CBS domain [Gener 99.0 6.4E-09 1.4E-13 85.8 13.3 110 165-310 7-117 (117)
152 cd04604 CBS_pair_KpsF_GutQ_ass 99.0 3.8E-09 8.2E-14 86.8 11.9 111 166-311 3-113 (114)
153 cd04624 CBS_pair_11 The CBS do 99.0 6.9E-09 1.5E-13 85.1 13.4 110 166-311 2-111 (112)
154 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.7E-09 5.8E-14 91.4 11.3 113 260-381 2-118 (133)
155 cd04625 CBS_pair_12 The CBS do 99.0 7.5E-09 1.6E-13 84.9 13.6 109 167-311 3-111 (112)
156 TIGR01303 IMP_DH_rel_1 IMP deh 99.0 2.1E-08 4.6E-13 103.1 19.8 122 150-315 83-204 (475)
157 cd04584 CBS_pair_ACT_assoc Thi 99.0 7.1E-09 1.5E-13 86.2 13.4 119 166-311 2-120 (121)
158 cd04622 CBS_pair_9 The CBS dom 99.0 1.1E-08 2.4E-13 84.0 14.0 111 166-311 2-112 (113)
159 PLN02274 inosine-5'-monophosph 99.0 2.6E-08 5.6E-13 103.3 19.9 111 165-314 108-222 (505)
160 cd04599 CBS_pair_GGDEF_assoc2 99.0 9.3E-09 2E-13 83.2 13.0 102 166-310 2-103 (105)
161 TIGR01137 cysta_beta cystathio 99.0 4E-09 8.7E-14 109.0 13.5 113 257-397 341-453 (454)
162 cd04609 CBS_pair_PALP_assoc2 T 99.0 9E-09 2E-13 83.8 12.9 109 166-312 2-110 (110)
163 COG4109 Predicted transcriptio 99.0 3.3E-09 7.2E-14 101.3 11.3 110 259-399 198-307 (432)
164 cd04602 CBS_pair_IMPDH_2 This 99.0 1.1E-08 2.3E-13 84.5 12.7 107 166-311 3-113 (114)
165 PTZ00314 inosine-5'-monophosph 99.0 5.5E-08 1.2E-12 100.8 20.7 109 166-313 105-217 (495)
166 cd04594 CBS_pair_EriC_assoc_ar 99.0 7.9E-09 1.7E-13 84.0 11.6 100 168-311 4-103 (104)
167 PF00571 CBS: CBS domain CBS d 99.0 1.2E-09 2.6E-14 78.9 6.0 51 348-398 6-56 (57)
168 PRK11573 hypothetical protein; 99.0 2.2E-08 4.8E-13 101.8 17.3 131 152-317 184-314 (413)
169 cd04638 CBS_pair_25 The CBS do 99.0 1.2E-08 2.6E-13 83.0 12.5 103 261-395 3-105 (106)
170 cd04606 CBS_pair_Mg_transporte 99.0 6.9E-09 1.5E-13 84.9 11.1 102 170-312 2-108 (109)
171 cd04610 CBS_pair_ParBc_assoc T 99.0 1.8E-08 3.9E-13 81.8 13.4 104 166-311 3-106 (107)
172 cd04634 CBS_pair_21 The CBS do 99.0 1.6E-08 3.4E-13 87.4 13.6 136 166-311 2-142 (143)
173 cd02205 CBS_pair The CBS domai 98.9 2.4E-08 5.3E-13 80.8 13.6 111 166-311 2-112 (113)
174 cd04601 CBS_pair_IMPDH This cd 98.9 1.7E-08 3.7E-13 82.3 10.8 106 166-311 3-109 (110)
175 cd04598 CBS_pair_GGDEF_assoc T 98.9 3.8E-08 8.2E-13 81.6 12.9 113 166-311 2-118 (119)
176 TIGR01137 cysta_beta cystathio 98.9 1.9E-08 4.1E-13 103.9 13.0 130 144-313 324-453 (454)
177 cd04638 CBS_pair_25 The CBS do 98.8 1.1E-07 2.5E-12 77.1 12.8 104 166-311 2-105 (106)
178 TIGR00393 kpsF KpsF/GutQ famil 98.8 4.5E-08 9.7E-13 93.9 11.9 114 155-305 155-268 (268)
179 COG4109 Predicted transcriptio 98.8 4.8E-08 1E-12 93.5 11.6 124 155-319 188-311 (432)
180 cd02688 E_set E or "early" set 98.8 3.4E-08 7.3E-13 76.7 8.0 72 21-94 4-77 (83)
181 COG2239 MgtE Mg/Co/Ni transpor 98.7 9.5E-08 2.1E-12 97.0 10.9 120 250-400 131-255 (451)
182 cd02854 Glycogen_branching_enz 98.7 1.8E-07 3.9E-12 75.7 9.8 67 22-90 6-86 (99)
183 COG1253 TlyC Hemolysins and re 98.7 3.3E-07 7.1E-12 93.9 14.0 137 145-318 194-332 (429)
184 PRK11573 hypothetical protein; 98.6 4.3E-07 9.3E-12 92.4 13.9 121 258-403 196-316 (413)
185 KOG2550 IMP dehydrogenase/GMP 98.6 3.7E-07 8E-12 89.0 10.8 167 184-395 56-225 (503)
186 PF00571 CBS: CBS domain CBS d 98.6 1.3E-07 2.8E-12 68.1 5.6 54 159-215 3-56 (57)
187 TIGR01186 proV glycine betaine 98.5 1.2E-06 2.7E-11 87.5 13.9 110 262-402 253-362 (363)
188 COG1253 TlyC Hemolysins and re 98.5 2.9E-06 6.2E-11 87.0 14.4 121 258-405 215-335 (429)
189 PF02922 CBM_48: Carbohydrate- 98.4 2.1E-07 4.5E-12 73.1 3.7 58 21-80 11-74 (85)
190 COG2239 MgtE Mg/Co/Ni transpor 98.4 3.6E-06 7.8E-11 85.6 13.1 130 144-316 119-255 (451)
191 PRK10070 glycine betaine trans 98.4 4.3E-06 9.2E-11 84.6 13.1 106 264-400 290-395 (400)
192 COG4535 CorC Putative Mg2+ and 98.2 4.8E-06 1E-10 75.9 8.2 116 258-400 76-191 (293)
193 COG4536 CorB Putative Mg2+ and 98.2 2.4E-05 5.1E-10 76.1 12.6 131 153-318 198-328 (423)
194 cd04597 CBS_pair_DRTGG_assoc2 98.1 7.3E-06 1.6E-10 67.9 5.7 47 349-395 66-112 (113)
195 smart00116 CBS Domain in cysta 98.0 1.5E-05 3.1E-10 54.0 6.2 47 351-397 2-48 (49)
196 KOG0474 Cl- channel CLC-7 and 98.0 1.6E-05 3.4E-10 81.6 8.9 145 256-401 587-750 (762)
197 COG4535 CorC Putative Mg2+ and 98.0 1.6E-05 3.5E-10 72.6 7.9 128 153-317 65-192 (293)
198 COG0296 GlgB 1,4-alpha-glucan 97.9 5.6E-05 1.2E-09 79.5 11.0 165 20-191 35-231 (628)
199 KOG2550 IMP dehydrogenase/GMP 97.9 0.00013 2.9E-09 71.5 11.7 129 137-312 96-226 (503)
200 TIGR01186 proV glycine betaine 97.9 0.00022 4.8E-09 71.4 13.1 107 169-316 254-360 (363)
201 PRK10070 glycine betaine trans 97.8 0.00021 4.6E-09 72.4 12.5 106 170-316 290-395 (400)
202 cd05808 CBM20_alpha_amylase Al 97.8 0.00013 2.9E-09 58.4 8.6 54 21-76 1-63 (95)
203 PF00686 CBM_20: Starch bindin 97.8 4.6E-05 1E-09 61.3 5.9 56 21-76 2-68 (96)
204 COG4536 CorB Putative Mg2+ and 97.7 0.00012 2.6E-09 71.3 8.7 117 258-399 209-325 (423)
205 cd02860 Pullulanase_N_term Pul 97.7 0.00011 2.5E-09 59.4 6.8 65 23-91 10-86 (100)
206 cd02855 Glycogen_branching_enz 97.7 0.00033 7.2E-09 57.1 9.3 68 23-91 23-97 (106)
207 KOG0474 Cl- channel CLC-7 and 97.7 0.00016 3.4E-09 74.5 8.5 154 150-313 577-746 (762)
208 PRK14869 putative manganese-de 97.7 0.00012 2.5E-09 77.7 7.9 52 348-399 75-126 (546)
209 cd05818 CBM20_water_dikinase P 97.6 0.00042 9.1E-09 55.3 8.3 53 21-76 2-61 (92)
210 cd04597 CBS_pair_DRTGG_assoc2 97.6 0.00012 2.5E-09 60.6 5.2 54 155-211 58-111 (113)
211 cd05814 CBM20_Prei4 Prei4, N-t 97.5 0.00055 1.2E-08 57.4 8.7 56 22-77 2-67 (120)
212 cd05809 CBM20_beta_amylase Bet 97.5 0.00087 1.9E-08 54.2 8.7 57 20-76 2-68 (99)
213 PLN02447 1,4-alpha-glucan-bran 97.4 0.0005 1.1E-08 74.2 8.1 64 22-88 115-192 (758)
214 PRK12568 glycogen branching en 97.3 0.00058 1.3E-08 73.6 8.2 65 22-89 139-211 (730)
215 smart00116 CBS Domain in cysta 97.3 0.00068 1.5E-08 45.4 5.9 47 167-214 2-48 (49)
216 KOG0475 Cl- channel CLC-3 and 97.3 0.0029 6.2E-08 65.6 12.6 134 260-398 557-695 (696)
217 cd05820 CBM20_novamyl Novamyl 97.3 0.0023 5E-08 52.1 9.4 55 20-76 2-70 (103)
218 cd02856 Glycogen_debranching_e 97.3 0.00088 1.9E-08 54.5 6.9 53 23-79 11-67 (103)
219 cd05813 CBM20_genethonin_1 Gen 97.2 0.0015 3.2E-08 52.4 6.9 54 21-76 1-62 (95)
220 PRK12313 glycogen branching en 97.1 0.0013 2.8E-08 71.0 8.2 67 22-90 39-112 (633)
221 PRK14706 glycogen branching en 97.1 0.0013 2.8E-08 70.6 7.4 66 22-90 39-112 (639)
222 PRK14705 glycogen branching en 97.0 0.0013 2.8E-08 74.6 7.5 65 20-86 637-709 (1224)
223 cd05811 CBM20_glucoamylase Glu 97.0 0.0025 5.4E-08 52.1 7.3 58 19-76 5-73 (106)
224 cd05817 CBM20_DSP Dual-specifi 97.0 0.0024 5.2E-08 51.7 6.7 45 30-76 12-62 (100)
225 PRK05402 glycogen branching en 97.0 0.0019 4.2E-08 70.6 8.0 66 22-88 132-204 (726)
226 cd05816 CBM20_DPE2_repeat2 Dis 96.9 0.0038 8.3E-08 50.4 6.9 52 23-76 2-64 (99)
227 cd05807 CBM20_CGTase CGTase, C 96.8 0.0063 1.4E-07 49.3 8.1 57 20-76 2-70 (101)
228 cd05467 CBM20 The family 20 ca 96.8 0.0049 1.1E-07 49.2 6.9 46 30-76 12-65 (96)
229 cd02853 MTHase_N_term Maltooli 96.7 0.0066 1.4E-07 47.5 7.0 62 23-90 10-73 (85)
230 KOG0475 Cl- channel CLC-3 and 96.7 0.014 3E-07 60.7 10.7 136 166-313 557-694 (696)
231 cd05810 CBM20_alpha_MTH Glucan 96.6 0.0081 1.8E-07 48.3 7.0 54 21-76 1-64 (97)
232 cd02852 Isoamylase_N_term Isoa 96.6 0.0055 1.2E-07 51.2 6.1 60 23-84 9-76 (119)
233 TIGR02402 trehalose_TreZ malto 96.4 0.0084 1.8E-07 63.4 7.4 61 23-90 1-64 (542)
234 PRK05402 glycogen branching en 96.2 0.0088 1.9E-07 65.5 6.5 63 22-86 29-95 (726)
235 TIGR01515 branching_enzym alph 96.1 0.012 2.7E-07 63.1 7.2 67 22-90 29-103 (613)
236 cd05806 CBM20_laforin Laforin 95.8 0.12 2.7E-06 42.6 9.9 50 27-76 11-74 (112)
237 cd05815 CBM20_DPE2_repeat1 Dis 95.7 0.024 5.2E-07 45.8 5.4 54 23-76 2-65 (101)
238 PF11806 DUF3327: Domain of un 95.5 0.13 2.7E-06 43.3 9.3 84 21-106 2-115 (122)
239 TIGR02104 pulA_typeI pullulana 94.8 0.074 1.6E-06 57.1 7.4 65 23-90 21-95 (605)
240 TIGR03415 ABC_choXWV_ATP choli 94.2 0.086 1.9E-06 53.2 5.9 47 350-398 334-380 (382)
241 PF03423 CBM_25: Carbohydrate 94.2 0.076 1.7E-06 41.8 4.3 61 22-82 3-76 (87)
242 PLN02316 synthase/transferase 94.0 0.18 3.9E-06 56.8 8.3 53 31-83 170-226 (1036)
243 COG4175 ProV ABC-type proline/ 93.9 0.11 2.4E-06 50.4 5.5 91 269-399 294-384 (386)
244 PLN02950 4-alpha-glucanotransf 93.7 0.44 9.6E-06 53.3 10.6 61 16-76 4-74 (909)
245 PLN02950 4-alpha-glucanotransf 93.5 0.49 1.1E-05 53.0 10.7 72 16-89 148-235 (909)
246 TIGR02100 glgX_debranch glycog 92.3 0.33 7.1E-06 52.9 7.0 55 22-80 15-75 (688)
247 PRK10439 enterobactin/ferric e 92.2 0.75 1.6E-05 47.0 9.2 85 17-102 35-161 (411)
248 PLN02316 synthase/transferase 91.5 0.88 1.9E-05 51.4 9.3 74 20-97 328-413 (1036)
249 TIGR02102 pullulan_Gpos pullul 91.3 0.53 1.1E-05 53.6 7.4 65 23-89 329-408 (1111)
250 COG1125 OpuBA ABC-type proline 91.2 0.33 7.3E-06 45.8 4.9 109 268-396 194-308 (309)
251 TIGR02103 pullul_strch alpha-1 89.8 1.4 3.1E-05 49.1 9.1 67 22-90 136-216 (898)
252 COG4175 ProV ABC-type proline/ 89.5 0.73 1.6E-05 44.9 5.6 136 130-315 240-384 (386)
253 PRK03705 glycogen debranching 89.1 0.84 1.8E-05 49.5 6.5 55 22-80 20-78 (658)
254 PLN02960 alpha-amylase 89.1 0.47 1E-05 52.2 4.6 54 22-77 129-198 (897)
255 TIGR03415 ABC_choXWV_ATP choli 87.3 2.3 5E-05 43.0 8.0 47 260-314 334-380 (382)
256 COG1125 OpuBA ABC-type proline 87.0 22 0.00047 34.0 13.4 135 136-312 169-308 (309)
257 KOG0476 Cl- channel CLC-2 and 81.9 1.9 4.1E-05 46.4 4.6 59 344-402 591-651 (931)
258 cd02857 CD_pullulan_degrading_ 81.0 5.9 0.00013 32.2 6.5 58 19-76 16-79 (116)
259 PLN03244 alpha-amylase; Provis 80.0 2.1 4.5E-05 46.8 4.2 56 11-68 121-185 (872)
260 KOG0470 1,4-alpha-glucan branc 78.4 2.3 4.9E-05 45.7 3.8 40 23-64 115-157 (757)
261 PRK14510 putative bifunctional 77.0 9.8 0.00021 44.4 8.8 55 22-80 24-84 (1221)
262 PLN02877 alpha-amylase/limit d 76.2 12 0.00025 42.3 8.8 52 22-77 223-280 (970)
263 PF01357 Pollen_allerg_1: Poll 74.1 9.9 0.00021 29.4 5.5 62 17-83 10-77 (82)
264 KOG1263 Multicopper oxidases [ 68.8 9.2 0.0002 40.6 5.6 66 42-112 84-154 (563)
265 COG3794 PetE Plastocyanin [Ene 66.7 20 0.00044 30.2 6.2 49 21-73 62-111 (128)
266 PF02903 Alpha-amylase_N: Alph 65.5 9.1 0.0002 31.7 4.0 60 17-76 19-87 (120)
267 KOG0476 Cl- channel CLC-2 and 56.6 18 0.00038 39.4 5.0 57 256-316 593-649 (931)
268 PF05198 IF3_N: Translation in 51.3 30 0.00065 26.4 4.3 31 372-402 12-42 (76)
269 TIGR02375 pseudoazurin pseudoa 47.3 75 0.0016 26.3 6.4 48 21-73 23-71 (116)
270 PF11896 DUF3416: Domain of un 46.2 43 0.00094 30.3 5.2 40 41-83 55-99 (187)
271 KOG2118 Predicted membrane pro 45.7 42 0.00091 35.3 5.8 131 146-313 195-327 (498)
272 PF14347 DUF4399: Domain of un 45.0 45 0.00097 26.1 4.5 32 56-88 50-81 (87)
273 TIGR03503 conserved hypothetic 44.7 44 0.00095 33.6 5.4 42 35-79 152-195 (374)
274 PRK10785 maltodextrin glucosid 41.9 74 0.0016 34.3 7.1 63 17-79 17-87 (598)
275 PRK11388 DNA-binding transcrip 41.7 84 0.0018 34.0 7.6 101 272-390 63-163 (638)
276 PF13473 Cupredoxin_1: Cupredo 41.3 29 0.00062 27.8 3.0 17 56-72 73-90 (104)
277 TIGR03009 plancto_dom_2 Planct 37.9 33 0.00071 31.6 3.1 16 75-90 67-85 (210)
278 PF14827 Cache_3: Sensory doma 34.2 38 0.00083 27.6 2.8 18 373-390 92-109 (116)
279 TIGR02657 amicyanin amicyanin. 34.0 1.1E+02 0.0023 23.3 5.1 48 22-73 20-69 (83)
280 PF03370 CBM_21: Putative phos 33.5 2.5E+02 0.0054 22.8 7.5 62 18-79 18-99 (113)
281 PF07495 Y_Y_Y: Y_Y_Y domain; 29.1 45 0.00099 23.8 2.2 22 63-84 34-58 (66)
282 PF13365 Trypsin_2: Trypsin-li 28.1 38 0.00083 27.0 1.8 21 367-387 100-120 (120)
283 TIGR03102 halo_cynanin halocya 28.0 2.7E+02 0.006 22.9 6.8 47 22-73 51-99 (115)
284 PF08400 phage_tail_N: Prophag 27.3 28 0.00061 29.6 0.8 54 56-111 46-101 (134)
285 KOG0045 Cytosolic Ca2+-depende 26.6 57 0.0012 35.2 3.1 25 67-91 116-143 (612)
286 PRK11388 DNA-binding transcrip 24.8 3.4E+02 0.0073 29.4 8.8 101 176-305 61-162 (638)
287 PF14044 NETI: NETI protein 23.6 96 0.0021 22.2 2.8 24 353-378 3-26 (57)
288 PRK00028 infC translation init 23.4 76 0.0016 28.4 2.9 29 372-400 19-47 (177)
289 PLN00115 pollen allergen group 23.3 2.9E+02 0.0063 22.9 6.1 49 30-82 46-97 (118)
290 COG3397 Uncharacterized protei 23.2 4.7E+02 0.01 25.3 8.1 76 21-106 114-208 (308)
291 TIGR00168 infC translation ini 21.7 79 0.0017 28.0 2.6 28 373-400 8-35 (165)
292 cd00503 Frataxin Frataxin is a 21.5 48 0.001 26.9 1.1 17 68-85 67-83 (105)
293 PF02743 Cache_1: Cache domain 21.5 90 0.0019 23.3 2.6 26 374-399 18-47 (81)
294 PF05738 Cna_B: Cna protein B- 20.9 1.7E+02 0.0037 21.0 4.0 25 56-81 26-52 (70)
295 PLN00044 multi-copper oxidase- 20.9 1.3E+02 0.0028 32.4 4.5 62 42-108 85-151 (596)
296 COG0290 InfC Translation initi 20.6 1.5E+02 0.0033 26.3 4.0 32 371-402 17-48 (176)
297 PF00127 Copper-bind: Copper b 20.3 1.8E+02 0.004 22.8 4.3 17 22-38 26-43 (99)
298 PLN02991 oxidoreductase 20.1 1.3E+02 0.0028 32.0 4.3 44 56-102 97-145 (543)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.94 E-value=1.8e-25 Score=222.48 Aligned_cols=250 Identities=30% Similarity=0.544 Sum_probs=207.4
Q ss_pred HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 014342 144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223 (426)
Q Consensus 144 ~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~ 223 (426)
....+.+|+..++||+++|.+.+++.+|..+++.+|+.+|..++++++||||....+++|+++..||+.++..++.....
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 56789999999999999999999999999999999999999999999999999889999999999999998877764211
Q ss_pred C-ChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342 224 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (426)
Q Consensus 224 ~-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG 302 (426)
. ..+.+....+..++....... ....++++.+.|..++.+++..+.++++|++||+| .+.+ ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~ 200 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY 200 (381)
T ss_pred HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence 1 112222222222322211100 01134449999999999999999999999999996 3456 7999
Q ss_pred EecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC
Q 014342 303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND 382 (426)
Q Consensus 303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g 382 (426)
++|++.|++++..+...++ ...++..++.++.+|+|. ++..+..++++.+|+++|.+.+++++||||+.|
T Consensus 201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g 270 (381)
T KOG1764|consen 201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG 270 (381)
T ss_pred ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence 9999999999998877655 246889999999999984 789999999999999999999999999999999
Q ss_pred cEEEEEeHHHHHHHHhccccccCCCCCcc-HHHHHHHHH
Q 014342 383 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQVIARFL 420 (426)
Q Consensus 383 ~lvGiis~~DI~~~~~~~~~~~l~~~~~~-v~~~l~~~~ 420 (426)
+.+|++++.|++.++..+.|..++ .+ +.+++....
T Consensus 271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~ 306 (381)
T KOG1764|consen 271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP 306 (381)
T ss_pred ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc
Confidence 999999999999999999999986 66 777776543
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=4.1e-25 Score=171.62 Aligned_cols=79 Identities=46% Similarity=0.944 Sum_probs=74.0
Q ss_pred ceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeE
Q 014342 20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (426)
Q Consensus 20 ~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn~ 99 (426)
.+||+|+|+++|++|+|+|+|+||++..||.+.+ ++ |++++.||||.|+|||+|||.|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999875 34 99999999999999999999999999999999999999999
Q ss_pred EE
Q 014342 100 YI 101 (426)
Q Consensus 100 ~~ 101 (426)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-23 Score=194.06 Aligned_cols=167 Identities=17% Similarity=0.328 Sum_probs=139.8
Q ss_pred CcccccccccCCCCccccHHHHHH-----HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeee
Q 014342 120 NMEVDDVVMRPEGFAQYSEADLQL-----SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW 194 (426)
Q Consensus 120 ~~d~~~~l~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~ 194 (426)
.-|++++|+++++.+||+++|||+ +++++++.+++.||+|+|++ .|+++.++.++.+|+++|.+|+++++||+
T Consensus 205 ~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~ 282 (382)
T COG3448 205 SEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVL 282 (382)
T ss_pred HHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCccccccc
Confidence 668899999999999999999988 89999999999999999988 68999999999999999999999999999
Q ss_pred eCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHH
Q 014342 195 DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVA 274 (426)
Q Consensus 195 D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~ 274 (426)
|+. .+++||+|.+|+++.... .+ .+.++ .. .+++...+|+.++.++.|+++..+++
T Consensus 283 d~~-~rl~GiVt~~dl~~~a~~-----~p----------~qrlr----~~----~~~~vk~imt~~v~tv~pdtpa~~lv 338 (382)
T COG3448 283 DEH-RRLVGIVTQRDLLKHARP-----SP----------FQRLR----FL----RPPTVKGIMTTPVVTVRPDTPAVELV 338 (382)
T ss_pred ccc-cceeeeeeHHHHhhccCc-----ch----------HHHhh----cc----CCCcccccccCcceeecCCCcHHHHH
Confidence 964 699999999998763221 00 01111 00 01112225788999999999999999
Q ss_pred HHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcc
Q 014342 275 LKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318 (426)
Q Consensus 275 ~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~ 318 (426)
..+.+.+.|++||+| +.| +++|||||+|++..++++..
T Consensus 339 p~lad~g~H~lpvld---~~g---~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 339 PRLADEGLHALPVLD---AAG---KLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred HHhhcCCcceeeEEc---CCC---cEEEEeeHHHHHHHHHHHHH
Confidence 999999999999995 346 79999999999999987643
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.78 E-value=6.9e-19 Score=137.94 Aligned_cols=77 Identities=38% Similarity=0.747 Sum_probs=69.5
Q ss_pred eEEEEEecCC-CceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee-cCCCCCe-eeCCCCCee
Q 014342 21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN 97 (426)
Q Consensus 21 ~~v~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~-~d~~~p~-~~d~~G~~n 97 (426)
++++|+|.++ +++|+|+|+||+|+. .+|.+.+ +|.|+++++|+||.|+|||+|||.|. +||.++. ..|..|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCc-ccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5899999986 599999999999984 7898864 69999999999999999999999998 9999985 678899999
Q ss_pred eEE
Q 014342 98 CVY 100 (426)
Q Consensus 98 n~~ 100 (426)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 5
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.69 E-value=5e-17 Score=155.99 Aligned_cols=90 Identities=36% Similarity=0.676 Sum_probs=82.7
Q ss_pred CCCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCC
Q 014342 15 VVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYG 94 (426)
Q Consensus 15 ~~~~~~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G 94 (426)
.......+++|+|.++++.|+|+|+|.||...+++.+.....|.|+.++.||+|.|+|||+|||+|++|++.|++.|..|
T Consensus 74 ~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~G 153 (289)
T KOG1616|consen 74 KDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLG 153 (289)
T ss_pred cccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccC
Confidence 35566899999999999999999999999999999987655556999999999999999999999999999999999999
Q ss_pred CeeeEEEecc
Q 014342 95 VVNCVYIAVP 104 (426)
Q Consensus 95 ~~nn~~~v~~ 104 (426)
+.||++.|.+
T Consensus 154 n~~N~i~v~~ 163 (289)
T KOG1616|consen 154 NLNNILEVQD 163 (289)
T ss_pred CcccceEecC
Confidence 9999999943
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.67 E-value=7e-16 Score=142.97 Aligned_cols=175 Identities=17% Similarity=0.261 Sum_probs=125.1
Q ss_pred cEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhh-hHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHH
Q 014342 200 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 278 (426)
Q Consensus 200 ~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~ 278 (426)
+-+| ++..|+...++.+.+.. .++.++++....+. +....+..++..|-++ |+++++++.+++++.+|.+.|.
T Consensus 199 ~rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~LtcadI----MSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 199 QRVG-FSSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELTCADI----MSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred hccC-CCHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhccccHHHh----cCccceecCCcCChHHHHHHHH
Confidence 4467 78899988888765433 23445555432221 2222233333455554 8999999999999999999999
Q ss_pred hCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCC
Q 014342 279 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 358 (426)
Q Consensus 279 ~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~ 358 (426)
+++++.+||+| ++ . +++||+|++|+++...... -+.++.+ ..+.+...|+.++.|+.+++
T Consensus 273 ~H~ikaLPV~d--~~-~---rl~GiVt~~dl~~~a~~~p----------~qrlr~~----~~~~vk~imt~~v~tv~pdt 332 (382)
T COG3448 273 EHRIKALPVLD--EH-R---RLVGIVTQRDLLKHARPSP----------FQRLRFL----RPPTVKGIMTTPVVTVRPDT 332 (382)
T ss_pred HcCcccccccc--cc-c---ceeeeeeHHHHhhccCcch----------HHHhhcc----CCCcccccccCcceeecCCC
Confidence 99999999996 23 3 6999999999987422110 0011100 00122334457999999999
Q ss_pred CHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 359 ~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
+..+.+-++.+.+.+++||+|++|+++||||.+|++..+...
T Consensus 333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865443
No 7
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=7.3e-16 Score=140.50 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=101.0
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (426)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (426)
.|+++++++.+++|+.+|+++|.++++++.||+|+ + +++|++|.+||.+.++... +...|.++|
T Consensus 177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g~---------~~~kV~~~M 240 (294)
T COG2524 177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANGN---------LDAKVSDYM 240 (294)
T ss_pred hccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcCC---------ccccHHHHh
Confidence 47899999999999999999999999999999952 3 5999999999999987531 234455444
Q ss_pred ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (426)
Q Consensus 336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~ 398 (426)
.++++|+.+|+.+++|+++|..+++++|.|+|.+|+.+|+||++||+..+.
T Consensus 241 ------------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 241 ------------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ------------ccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 478999999999999999999999999999999999999999999998654
No 8
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.63 E-value=3.1e-15 Score=136.41 Aligned_cols=121 Identities=18% Similarity=0.325 Sum_probs=101.2
Q ss_pred cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (426)
Q Consensus 154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (426)
..++.++|++ ++++++++.|+++|.++|++++|+.+||+|. ++++|++|.+|+.+.+...... .+
T Consensus 171 k~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~-----------~k 235 (294)
T COG2524 171 KEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLD-----------AK 235 (294)
T ss_pred cchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCcc-----------cc
Confidence 3556677766 8999999999999999999999999999985 3899999999999887643110 01
Q ss_pred hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l 313 (426)
.+. .|++.++++..|+.++||+++|.++++.||.|+|+ .| +.+|++|+.|||+.+
T Consensus 236 V~~-------------------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g---kpvGiITrTDIL~~i 290 (294)
T COG2524 236 VSD-------------------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG---KPVGIITRTDILTRI 290 (294)
T ss_pred HHH-------------------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC---cEEEEEehHHHHHHh
Confidence 111 25789999999999999999999999999999962 35 699999999999987
Q ss_pred H
Q 014342 314 C 314 (426)
Q Consensus 314 ~ 314 (426)
+
T Consensus 291 a 291 (294)
T COG2524 291 A 291 (294)
T ss_pred h
Confidence 5
No 9
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.6e-14 Score=115.84 Aligned_cols=96 Identities=45% Similarity=0.735 Sum_probs=84.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.|+.+|++.|.++++.++||+|+++++++|++|..|+...+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence 6889999999999999999999999999996557999999999975321
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
. ++++.|++++.+|++.|.+++++++||+++ ++| +++|++|.+|+++
T Consensus 51 ------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~ 97 (98)
T cd04618 51 ------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK 97 (98)
T ss_pred ------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence 1 467899999999999999999999999963 235 7999999999975
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=3.1e-14 Score=115.37 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=83.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
.++++.+++++.+|++.|.+++++++||+++ ++| +++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence 3678999999999999999999999999962 235 7999999999876311
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC-CcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~-g~lvGiis~~DI~~ 395 (426)
+.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+||+.
T Consensus 52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 3479999999999999999999999999987 99999999999874
No 11
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=9e-14 Score=116.33 Aligned_cols=118 Identities=22% Similarity=0.282 Sum_probs=91.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.+|++.|.+++++++||+++ +| +++|+++..|+++++..+... ....++.+.+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~~--- 66 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEALE--- 66 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHHh---
Confidence 5688999999999999999999999999952 45 799999999999875433111 00111111100
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
....+.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++
T Consensus 67 ---~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 67 ---RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ---hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 01112356789999999999999999999999999998899999999999875
No 12
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.53 E-value=4.1e-13 Score=134.11 Aligned_cols=199 Identities=16% Similarity=0.168 Sum_probs=149.1
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
...+.+.+..++.+|...+.+++++++||.|.+.+.++.++|..-++..+-....... ...+...++.++ .+
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~---~~~~l~~s~~dl-----~i 233 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP---LPSLLSKSLSDL-----GI 233 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc---cHHHhhCCHHHh-----Cc
Confidence 3448999999999999999999999999999777899999999998887764443221 122222222222 11
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL 324 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~ 324 (426)
+ ....+..+..++++.+|++.|..++++.+||++. .| ..+|+++..|+........-.
T Consensus 234 g-----------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~~----- 291 (381)
T KOG1764|consen 234 G-----------TWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTYN----- 291 (381)
T ss_pred c-----------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCccC-----
Confidence 1 1345788999999999999999999999999952 34 479999999998766544211
Q ss_pred cccccc-cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 325 PILQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 325 ~~~~~~-v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
.++.+ +.+ +.+ ........+++|+++++|.++++.|..++++++.|||++|.++|+||.+||+.++...
T Consensus 292 -~~~~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 292 -NLDLSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred -ccchhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 11111 111 110 0111224689999999999999999999999999999999999999999999987654
No 13
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.53 E-value=3.1e-13 Score=142.53 Aligned_cols=215 Identities=15% Similarity=0.203 Sum_probs=139.8
Q ss_pred ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (426)
Q Consensus 155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i 234 (426)
.++.|+|.+ ++++++++.++.+|+++|.+++++.+||+|+ +++++|++|..|+...+...... ..+ ..+ ..++
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~~~~~~~~~-~~~--~~~-~~t~ 140 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLARAYMDILDP-EIL--SKS-PTSL 140 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhhcch-hhh--hhc-CCCH
Confidence 578899865 7889999999999999999999999999995 47999999999998765533210 000 000 0001
Q ss_pred hhhHHHHHhh---c-------cccccCCC-------CCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC-
Q 014342 235 SAWKVGKLQL---N-------LKRQMDGN-------GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS- 296 (426)
Q Consensus 235 ~~~~~~~~~~---~-------~~~~~~g~-------~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~- 296 (426)
..+.+..... + .++..-++ ..+....++++.... +.+..+++.++++++|+.+......
T Consensus 141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v 217 (546)
T PRK14869 141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDV 217 (546)
T ss_pred HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHH
Confidence 1111000000 0 00000000 001122355554333 3345678889999999853220000
Q ss_pred -----cceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcC
Q 014342 297 -----CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD 371 (426)
Q Consensus 297 -----~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~ 371 (426)
...+.+|.|..|......... .+.+|.++|. .++++++++++++.+|.++|.+++
T Consensus 218 ~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~~V~~iM~-----------~~~~~~~~~~~~~~~~~~~m~~~~ 277 (546)
T PRK14869 218 LELAKENGVTVISTPYDTFTTARLIN---------QSIPVSYIMT-----------TEDLVTFSKDDYLEDVKEVMLKSR 277 (546)
T ss_pred HHHHHhCCCeEEEecccHHHHHHHhh---------cCCCHHHhcc-----------CCCcEEECCCCcHHHHHHHHHhcC
Confidence 003788888888877654321 2345555542 047889999999999999999999
Q ss_pred CcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 372 VSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 372 i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
++.+||||++|+++|+||++|+++....
T Consensus 278 ~~~~PVvd~~g~lvGiit~~dl~~~~~~ 305 (546)
T PRK14869 278 YRSYPVVDEDGKVVGVISRYHLLSPVRK 305 (546)
T ss_pred CCceEEEcCCCCEEEEEEHHHhhccccC
Confidence 9999999999999999999999986554
No 14
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=1.8e-13 Score=113.04 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=88.5
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
++++.+++++.+|++.|.+++.+++||++ +++ +++|++|..|+++.... .+...++.+++.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~---------~~~~~~v~~~~~---- 63 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVD---EEN---KVLGQVTLSDLLEIGPN---------DYETLKVCEVYI---- 63 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHhhccc---------cccccChhheee----
Confidence 46789999999999999999999999995 235 69999999999873211 111234554442
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||++||++
T Consensus 64 --------~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 64 --------VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --------cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 36678999999999999999999999999998899999999999975
No 15
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=3.5e-13 Score=113.27 Aligned_cols=120 Identities=17% Similarity=0.253 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.+|++.|.+++++++||+|+ .++ +++|+++..|+++++..+..............+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~------ 70 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRD------ 70 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhh------
Confidence 4677899999999999999989999999963 225 69999999999987654321110000000000000
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~ 394 (426)
...+..++.++++++++.+|+++|.+++++++||+|++|+++|+||.+||.
T Consensus 71 ----~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 71 ----LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ----cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 011235788999999999999999999999999999889999999999985
No 16
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=5.7e-13 Score=110.46 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=90.2
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
+.++.+++++.+|++.|.+++...+||+|+ +| +++|++|..|+++.+..... .....++.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~------~~~~~~v~~~~----- 65 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGG------PGCTAPVENVM----- 65 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCC------CcccCCHHHHh-----
Confidence 467899999999999999999999999952 35 69999999999986543110 11123344443
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++++++.+++++.+|++.|.++++..+||+|++|+++|+|+++|++.
T Consensus 66 -------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 66 -------TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred -------cCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 247778999999999999999999999999998899999999999874
No 17
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=4.5e-13 Score=111.84 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.+|++.|.++++.++||+|+ .+ +++|++|..|+++....... ....++.+++.. .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~~~~~~~-~ 67 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGAD-------LQKVPVGVIMTR-M 67 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCCC-------ccCCCHHHHhCC-C
Confidence 4678999999999999999999999999952 34 69999999999987642210 112223333310 0
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC---CcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~---g~lvGiis~~DI~~ 395 (426)
.++.++.+++++.+|+++|.+++++.+||||++ |+++|+||++||++
T Consensus 68 ---------~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 68 ---------PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ---------CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 257799999999999999999999999999986 79999999999875
No 18
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.46 E-value=3.7e-13 Score=114.28 Aligned_cols=116 Identities=22% Similarity=0.414 Sum_probs=95.2
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (426)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (426)
.|++|++.+.|++++.+++++|.++|++.+||++ + + +++|-||.++|.+.+.+.-. ...+..++++|
T Consensus 70 iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~-~---k~VGsItE~~iv~~~le~~e------~i~~~~vr~vM 136 (187)
T COG3620 70 IMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE---E-D---KVVGSITENDIVRALLEGME------SIRSLRVREVM 136 (187)
T ss_pred hccCCeeEECchhhHHHHHHHHHHcCCccCceee---C-C---eeeeeecHHHHHHHHhcccc------chhhhhHHHHh
Confidence 5899999999999999999999999999999995 2 4 69999999999998765422 12234444444
Q ss_pred ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
..++.++++++++..+-+++.+ ..++-|+ ++|+++||||+.||+++++.
T Consensus 137 ------------~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 137 ------------GEPFPTVSPDESLNVISQLLEE--HPAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------------cCCCCcCCCCCCHHHHHHHHhh--CCeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 3577889999999999888866 4568888 57999999999999998764
No 19
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.1e-12 Score=106.85 Aligned_cols=112 Identities=17% Similarity=0.281 Sum_probs=90.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
.+.++.+++++.+|++.|.+++.+.+||+++ ..+ +++|+++..|+++++...... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~~---- 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEIM---- 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHHh----
Confidence 4578999999999999999999999999962 224 699999999999876542111 1123344443
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++++++++.+|+++|.+++...+||+|+ |+++|+|++.||++
T Consensus 67 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 67 --------TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred --------cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 247789999999999999999999999999997 99999999999874
No 20
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.6e-12 Score=104.70 Aligned_cols=94 Identities=13% Similarity=0.233 Sum_probs=82.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.+|++.|.+++++.+||+| ++| +++|+++..|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD---DDG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHhcCC--------------------------
Confidence 457889999999999999999999999995 235 699999999987621
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+.++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1347899999999999999999999999998899999999999874
No 21
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.42 E-value=8e-13 Score=111.74 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=90.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.++++.|.++++.++||+++ ++ +++|+++..++++.+...... ...++.++|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~v~~im---- 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSDPVSKAL---- 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCCcHHHHh----
Confidence 5678999999999999999999999999952 34 699999999999876543211 134555555
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHH---------hcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL 396 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~---------~~~i~~lPVVd~~g~lvGiis~~DI~~~ 396 (426)
.+++.++.+++++.+|.++|. +.+..++||+|++|+++|+||++||+++
T Consensus 66 --------~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 66 --------YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 257889999999999999653 4478899999988999999999999875
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2.8e-12 Score=107.53 Aligned_cols=122 Identities=19% Similarity=0.359 Sum_probs=91.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++++++.++.++.++++.|.+++++++||+++ +| +++|+++..++++++...... .. ...+.....+..++.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~i~~ 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR-PL-RGRLRGRDKPETVGD 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc-hh-hhhhhcccccccHHH
Confidence 46788999999999999999999999999952 35 699999999998866432110 00 000000000111112
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||++|+++
T Consensus 74 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 74 -------IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred -------hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 22357889999999999999999999999999998899999999999874
No 23
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=4e-12 Score=104.96 Aligned_cols=109 Identities=21% Similarity=0.347 Sum_probs=88.7
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
.+++.+++++.+|+..|.+.+.+.+||+++ +| +++|+++..|+++.+..... ...++.+++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~~----- 64 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDDPVSEVM----- 64 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHhh-----
Confidence 467899999999999999999999999952 35 69999999999876543211 122344333
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||++||+.
T Consensus 65 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 65 -------NRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -------cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 136778999999999999999999999999998899999999999863
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=5.7e-12 Score=103.33 Aligned_cols=108 Identities=23% Similarity=0.446 Sum_probs=89.6
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++++++.+++++.++++.|.+++..++||+++ +| +++|+++..++++.+.... .++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~~--- 61 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KSVEDIM--- 61 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cCHHHhc---
Confidence 45678999999999999999999999999952 35 7999999999987654321 1133332
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|++.|.+++...+||++++|+++|+||+.||++
T Consensus 62 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 ---------TRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 146778999999999999999999999999999999999999999875
No 25
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.4e-12 Score=106.49 Aligned_cols=111 Identities=14% Similarity=0.240 Sum_probs=87.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++.++.+++++.+|++.|.+++ .+.+||+|+ ++ +++|+++..|+++...... ...++.+++.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~~~-- 64 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVIQVMT-- 64 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchhhhhc--
Confidence 4577899999999999998775 899999952 34 6999999999988654221 1233444431
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.. .++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..||++
T Consensus 65 ~~--------~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 65 PA--------AKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred cc--------ccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 00 13568999999999999999999999999998899999999999875
No 26
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.5e-12 Score=104.75 Aligned_cols=109 Identities=21% Similarity=0.443 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
.+.++.+++++.++++.|.+.+..++||+++ +| +++|+++..++++++..... ..++.+++.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~~~--- 63 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAPVRGVMR--- 63 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCcHHHHhc---
Confidence 3567899999999999999889999999952 35 69999999999987653311 123443331
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++||..
T Consensus 64 ---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 64 ---------RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ---------CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 46778999999999999999999999999998899999999999875
No 27
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=5.3e-12 Score=105.55 Aligned_cols=119 Identities=20% Similarity=0.277 Sum_probs=89.2
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.|+.+|+++|.++++.++||+|+ .++++|++|..|++..+...... . ....+..... ...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~---~-----~~~~~~~~~~-~~~-- 69 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYN---N-----LDLTVGEALE-RRS-- 69 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccc---c-----ccCCHHHHHh-hcc--
Confidence 4678999999999999999999999999986 57999999999988654321100 0 0000111000 000
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
.|..++.++.+++++.++++.|.+++++.+||+++ +| +++|++|++|++++
T Consensus 70 ----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~~~Givt~~di~~~ 120 (120)
T cd04641 70 ----------QDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NK---RVEGIISLSDILQF 120 (120)
T ss_pred ----------cCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CC---CEEEEEEHHHhhcC
Confidence 23467789999999999999999999999999952 35 69999999999863
No 28
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.40 E-value=7.4e-12 Score=106.45 Aligned_cols=121 Identities=16% Similarity=0.342 Sum_probs=95.0
Q ss_pred cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (426)
Q Consensus 154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (426)
..+|..+|.. +++++.+++++.+|+++|.++|++-+||+++ ++++|-||..|+++.+..-. +++..++
T Consensus 64 ~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~~ 131 (187)
T COG3620 64 RITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSLR 131 (187)
T ss_pred eEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhhh
Confidence 5789999976 8999999999999999999999999999986 68999999999988765321 2222222
Q ss_pred hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l 313 (426)
.+ . .|..+|.+|++++++...-.++-. ..++.|++ +| +++||||+.||++.+
T Consensus 132 vr-------~------------vM~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e----~G---~~vGIITk~DI~k~~ 183 (187)
T COG3620 132 VR-------E------------VMGEPFPTVSPDESLNVISQLLEE--HPAVLVVE----NG---KVVGIITKADIMKLL 183 (187)
T ss_pred HH-------H------------HhcCCCCcCCCCCCHHHHHHHHhh--CCeEEEEe----CC---ceEEEEeHHHHHHHH
Confidence 11 1 257889999999999776665544 45777773 46 799999999999986
Q ss_pred H
Q 014342 314 C 314 (426)
Q Consensus 314 ~ 314 (426)
.
T Consensus 184 ~ 184 (187)
T COG3620 184 A 184 (187)
T ss_pred h
Confidence 5
No 29
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.7e-12 Score=106.87 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc-ccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ-LGT 338 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~-i~~ 338 (426)
.++++.+++++.+|++.|.++++.++||+|+ .| +++|+++..|+++......... ..+....+ +..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-------~~~~~~~~~~~~ 68 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL-------LYRTITFKELSE 68 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh-------cccchhhhhhhh
Confidence 3578999999999999999999999999952 35 6999999999988754221110 00000000 000
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
........+.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 000000122357889999999999999999999999999998899999999999875
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.39 E-value=7.8e-12 Score=103.52 Aligned_cols=111 Identities=18% Similarity=0.371 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+.+++++||+++ .+ +++|+++..|+++.+...... ...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~~---- 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPSAVDEVA---- 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccccHHHhc----
Confidence 3567889999999999999999999999952 35 699999999999876532110 111233332
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC--CcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~--g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.+|+++|.+++...+||+|++ |+++|+||++||++
T Consensus 65 --------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 65 --------TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --------cCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 2467789999999999999999999999999987 89999999999875
No 31
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=8.8e-12 Score=102.39 Aligned_cols=111 Identities=23% Similarity=0.398 Sum_probs=89.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.++.++.++++.|.+++++++||+++ ++ +++|+++..|+++++...... ....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~~---- 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALDTPVSEIM---- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccccCHHHhc----
Confidence 4577899999999999999999999999952 34 699999999999876543211 1122333333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+++++|.+++.+.+||+++ |+++|+||..||++
T Consensus 66 --------~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 66 --------TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred --------CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 247788999999999999999999999999997 99999999999975
No 32
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1e-11 Score=102.06 Aligned_cols=110 Identities=22% Similarity=0.401 Sum_probs=89.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.++.++.+|++.|.+.+.+++||+++ ++ +++|+++..++++.+..... ...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~~---- 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTPVSEIM---- 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccCHHHhc----
Confidence 4567899999999999999999999999952 35 69999999999887654321 122333333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.+++++|.++++..+||+|++|+++|++|++||++
T Consensus 64 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 --------TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred --------cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 246778999999999999999999999999998899999999999874
No 33
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.6e-12 Score=104.27 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=87.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
.++++.+++++.++++.|.+++++.+||+| +++ +++|+++..|+++++........ ..+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~v~~~~---- 69 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD---KEG---KYVGTISLTDILWKLKGLENLDL--ERLVDLKVIDVM---- 69 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeEC---CCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCcHHHHh----
Confidence 357899999999999999999999999995 235 69999999999987753211000 000123333333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|++.|.+++ .+||+|++|+++|+||+.||++
T Consensus 70 --------~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 70 --------NTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred --------cCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 246778999999999999998865 5999999899999999999875
No 34
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=9.5e-12 Score=102.92 Aligned_cols=109 Identities=17% Similarity=0.339 Sum_probs=85.5
Q ss_pred ceEeCCCCCHHHHHHHHHhCC-CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+.++.++.++.++++.|.+++ ...+||++ . | +++|+++..|+++++..... ....++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~~---- 64 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE---K-G---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEVM---- 64 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcC---C-C---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHhc----
Confidence 467899999999999998888 56677773 2 5 69999999999986643211 1123344433
Q ss_pred ccccCCCCCCCeEEEcCC--CCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~--~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.++ +++.+|+++|.+++...+||+|++|+++|+||++||++
T Consensus 65 --------~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 65 --------TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred --------CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 2466778887 78999999999999999999999899999999999875
No 35
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=8.8e-12 Score=102.43 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=88.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.++.++.++++.|.+.+.+++||+++ .| +++|+++..|++.+..... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~~---- 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKKVFNIV---- 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCcHHHHh----
Confidence 4567899999999999999999999999952 35 6999999999987543210 1123344443
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|++.|.+++...+||+|+ |+++|+||+.||+.
T Consensus 64 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 --------SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred --------cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 247778999999999999999999999999997 99999999999863
No 36
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.37 E-value=1.2e-11 Score=100.58 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=85.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.++.++.+|++.|.+++.+.+||++ ++| +++|++|..|+++... .++.+++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d---~~g---~~~Giv~~~dl~~~~~--------------~~~~~~~---- 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD---ADG---QPLGFVTRREAARASG--------------GCCGDHA---- 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEeHHHHHHhcc--------------cchhhhc----
Confidence 356789999999999999999999999995 235 6999999999986421 1122222
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++..++.+++++.+|+++|.+++++.+||+|++|+++|+|+++|+++
T Consensus 58 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 --------EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred --------ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 135567999999999999999999999999999899999999999875
No 37
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.37 E-value=1.1e-11 Score=101.74 Aligned_cols=109 Identities=16% Similarity=0.250 Sum_probs=88.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
.++++.+++++.+|++.|.+.+...+||+++ ..+ +++|+++..++++++..... ..++.+++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~~---- 63 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDLL---- 63 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHHh----
Confidence 3577899999999999999999999999953 225 69999999999987643210 01222221
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 64 ---------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 ---------RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred ---------cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 35678999999999999999999999999998899999999999874
No 38
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=8.8e-12 Score=104.61 Aligned_cols=119 Identities=25% Similarity=0.449 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC----Ccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS----SLPILQQPVSSIQ 335 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~----~~~~~~~~v~~l~ 335 (426)
+++++.++.++.+|++.|.+.+.+.+||+++ ++| +++|+++..|+++++......... .......++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM 76 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh
Confidence 4577899999999999999999999999963 225 799999999999877543211000 0001112233322
Q ss_pred ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||+.||++
T Consensus 77 ------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 77 ------------TRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred ------------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 246889999999999999999999999999998899999999999975
No 39
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=103.50 Aligned_cols=118 Identities=21% Similarity=0.427 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc--ccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL--PILQQPVSSIQLG 337 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~--~~~~~~v~~l~i~ 337 (426)
++.++.+++++.++++.|.+.+++++||+++ +| +++|+++..++++.+........... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM-- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--
Confidence 4577899999999999999999999999952 35 69999999999987654321100000 00112222222
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||+.||++
T Consensus 74 ----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 74 ----------KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred ----------CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 247788999999999999999999999999998899999999999975
No 40
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=1.4e-11 Score=101.52 Aligned_cols=110 Identities=14% Similarity=0.242 Sum_probs=88.7
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
+.++.+++++.+|++.|.+.+.+++||+++ ++ +++|+++..|+++.+.... .+...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i~~~~----- 64 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKDAKVREVM----- 64 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcCCcHHHhc-----
Confidence 467899999999999999999999999952 34 6999999999987543321 01123343333
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.++++.|.+++...+||+|++|+++|++++.||++
T Consensus 65 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 -------NSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -------cCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 146778999999999999999999999999998899999999999864
No 41
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.35 E-value=6e-12 Score=126.63 Aligned_cols=117 Identities=19% Similarity=0.314 Sum_probs=99.4
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
++.|+++++|.+|+.+|+..|.+.|++.+.+++. ++ ..+||+|++|+.+.+...... ...+|.++|
T Consensus 155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~~~V~evm- 220 (610)
T COG2905 155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KTQKVSEVM- 220 (610)
T ss_pred hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cccchhhhh-
Confidence 5788899999999999999999999999999952 34 589999999999987654222 134444444
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
..|++++...+.+++|+-+|.+++|.++||++ +|+++|+||..||+++...
T Consensus 221 -----------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 221 -----------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred -----------ccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 36999999999999999999999999999997 6999999999999998874
No 42
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=8.3e-12 Score=123.33 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=92.5
Q ss_pred CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342 257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (426)
Q Consensus 257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l 334 (426)
|.+ +++++.+++++.+|++.|.+++...+||++ ++| +++|++|..|+.+.+.... .+...++.++
T Consensus 208 m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~v~~i 274 (326)
T PRK10892 208 MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQASIADV 274 (326)
T ss_pred hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccCCHHHh
Confidence 555 889999999999999999999888888885 345 7999999999987543210 1123345555
Q ss_pred cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (426)
Q Consensus 335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~ 396 (426)
| .++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus 275 m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 275 M------------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred c------------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 4 25788999999999999999999999999998 5899999999999863
No 43
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=1.9e-11 Score=100.12 Aligned_cols=108 Identities=23% Similarity=0.420 Sum_probs=88.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.++++.|.+++++++||++ + + +++|+++..|+++....... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~~---- 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKDVM---- 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHHHh----
Confidence 467789999999999999999999999995 2 5 79999999999986543211 12233322
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.++++.|.+.++..+||+|++|+++|+|++.||++
T Consensus 62 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 --------TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred --------cCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 146778999999999999999999999999998899999999999874
No 44
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=9.6e-12 Score=102.64 Aligned_cols=110 Identities=13% Similarity=0.225 Sum_probs=86.3
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+++++..+.++.+|++.|.+++...+||+|+ +++++|++|..|+..... . .....++..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~---~--------~~~~~~v~~--------- 60 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP---N--------DYETLKVCE--------- 60 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc---c--------cccccChhh---------
Confidence 4678899999999999999999999999985 479999999999865211 0 000001111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
.|..++.++.+++++.+|++.|.+++.+++||+|+ +| +++|++|.+|++++
T Consensus 61 ----------~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~---~~~Giit~~di~~~ 111 (111)
T cd04603 61 ----------VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EG---KLVGTIYERELLRF 111 (111)
T ss_pred ----------eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---eEEEEEEhHHhhcC
Confidence 13456788999999999999999999999999952 35 79999999999863
No 45
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=9.2e-12 Score=122.72 Aligned_cols=113 Identities=17% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCCC--ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342 257 CPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (426)
Q Consensus 257 ~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l 334 (426)
|.++ ++++.+++++.+|++.|.+.+...+||+| ++| +++|++|..|+.+.+.... ....++.++
T Consensus 203 m~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd---~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~v~~i 268 (321)
T PRK11543 203 MRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD---AQQ---QVQGVFTDGDLRRWLVGGG--------ALTTPVNEA 268 (321)
T ss_pred hccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEecHHHHHHHHhCCC--------CcCCcHHHh
Confidence 4565 89999999999999999999999999995 245 6999999999988654221 112334444
Q ss_pred cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+ .+++.++.+++++.+|+++|.++++..+||||++|+++|+||++||++
T Consensus 269 m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 269 M------------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ 317 (321)
T ss_pred c------------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence 4 247778999999999999999999999999998899999999999986
No 46
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.35 E-value=1.5e-11 Score=100.89 Aligned_cols=109 Identities=22% Similarity=0.401 Sum_probs=88.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+++.+++||++ + + +++|+++..++++.+..... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~~---- 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD---D-G---RLVGIVTDRDLRNRVVAEGL-------DPDTPVSEVM---- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHhccCC-------CccCCHHHHh----
Confidence 457789999999999999999999999995 2 5 69999999999876543210 0122333332
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++++++.+++++.+|+++|.+++.+++||+++ |+++|++|++||++
T Consensus 64 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 --------TAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred --------CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 246778999999999999999999999999997 99999999999975
No 47
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.4e-11 Score=99.60 Aligned_cols=108 Identities=20% Similarity=0.421 Sum_probs=88.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++++++.++.++.+|.+.|.+++..++||++ + + +++|+++..|+++.+.... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~~--- 62 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKDYM--- 62 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHHHh---
Confidence 3567899999999999999988999999995 2 5 7999999999988653221 123344443
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||+.||++
T Consensus 63 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 ---------STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ---------cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 14677899999999999999999999999999 799999999999874
No 48
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.2e-11 Score=105.58 Aligned_cols=118 Identities=20% Similarity=0.351 Sum_probs=89.7
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC-------c-------
Q 014342 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-------L------- 324 (426)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-------~------- 324 (426)
+++.++.+++++.++++.|.+++.+++||++ +++ +++|+++..|+++.+.......... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD---DDG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC---CCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence 4577899999999999999999999999995 235 6999999999987654321100000 0
Q ss_pred -cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 325 -PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 325 -~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.....++.++ +.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||+.||++
T Consensus 76 ~~~~~~~v~~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 76 VRSHGRKVADV------------MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHhcCCCHHHH------------hCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0001122222 235778899999999999999999999999999 799999999999875
No 49
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.33 E-value=2.7e-11 Score=99.63 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=88.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+++.+.+||++ . + +++|+++..|+++.+..... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~------~~~~~~v~~i~---- 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGL------DPESTLVERVM---- 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCC------CcCcCCHHHhc----
Confidence 456789999999999999999999999995 2 5 79999999999865443211 01113344433
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|++.|.+++...+||++++|+++|+||..||+.
T Consensus 65 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 --------TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred --------CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 246678999999999999999999999999998899999999999863
No 50
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.33 E-value=2.2e-11 Score=100.71 Aligned_cols=110 Identities=27% Similarity=0.526 Sum_probs=91.8
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (426)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (426)
.+.++++.+++++.+|...|.+++++++||++. + +++|++|.+|+++.+....... .++.+++
T Consensus 6 ~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~~v~~v~-- 68 (117)
T COG0517 6 TKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------LPVKEVM-- 68 (117)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------ccHHHhc--
Confidence 467789999999999999999999999999952 2 5999999999999887543221 0233333
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHh-cCCcEeeEEcCCC-cEEEEEeHHHHH
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT 394 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~-~~i~~lPVVd~~g-~lvGiis~~DI~ 394 (426)
.++++++.+++++.+|+++|.+ ++++++||+|+++ +++|++|++||+
T Consensus 69 ----------~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 69 ----------TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ----------cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2478899999999999999999 7999999999986 999999999973
No 51
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=2.4e-11 Score=101.28 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=87.5
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.++.+|++.|.++++..+||+|. +++++|++|..|+........ +....++..+
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~---------~~~~~~~~~~-------- 63 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGA---------DLQKVPVGVI-------- 63 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCC---------CccCCCHHHH--------
Confidence 4678999999999999999999999999995 478999999999877543110 0011111111
Q ss_pred cccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|. .++.++.+++++.++++.|.+++++.+||+++++..+ +++|+||++||++
T Consensus 64 -----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~---~l~Gvit~~~l~~ 117 (118)
T cd04617 64 -----------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGL---EVIGRITKTNITK 117 (118)
T ss_pred -----------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccc---eEEEEEEhhheec
Confidence 23 3578999999999999999999999999996321125 7999999999865
No 52
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.33 E-value=2.5e-11 Score=99.48 Aligned_cols=109 Identities=23% Similarity=0.354 Sum_probs=88.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.++++.|.+.+.+++||++ + + +++|+++..|+++....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~--------~~~~~~~~~---- 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGRE--------ATVLVGDVM---- 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCcc--------cccCHHHhc----
Confidence 457899999999999999999999999995 2 5 69999999999876532110 001222222
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+++++|.+++.+.+||+|++|+++|+||..||++
T Consensus 63 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 63 --------TRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred --------cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 247788999999999999999999999999998899999999999975
No 53
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.8e-11 Score=100.24 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=87.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.+|+..|.+.+.+.+||++ ++| +++|+++..+++... ...++.+++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~-------------~~~~v~~~~~--- 60 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD---EKN---KVVGIVTSKDVAGKD-------------PDTTIEKVMT--- 60 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEEC---CCC---eEEEEecHHHHhccc-------------ccccHHHHhc---
Confidence 467889999999999999999999999995 245 799999999997421 0123333331
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++.++.+++++.+|+++|.+++...+||+|++|+++|++|+.||++
T Consensus 61 ---------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 61 ---------KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ---------CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 36678999999999999999999999999999999999999999875
No 54
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.9e-11 Score=100.78 Aligned_cols=112 Identities=25% Similarity=0.310 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.++.++.+|++.|.+++.+.+||++ +++ +++|+++..++++.+....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~~---- 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD---DNG---NLVGFLSEQDCLKQLLESSYHC-----DGVATVRDIM---- 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEEC---CCC---eEEEEeehHHHHHHhhhhhhcc-----CCCccHHHHh----
Confidence 457789999999999999998999999995 235 6999999999998765432110 0122333332
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|+||..||++
T Consensus 67 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 67 --------TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred --------ccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 246678999999999999999999999999997 99999999999975
No 55
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.33 E-value=3.2e-11 Score=98.79 Aligned_cols=109 Identities=24% Similarity=0.428 Sum_probs=89.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.+|++.|.+.+.+.+||++ + + +++|+++..|++++...... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~~---- 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD---D-G---RPLGIVTERDILRLLASGPD--------LQTPVGEVM---- 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEeHHHHHHHHhcCCC--------CCcCHHHhc----
Confidence 356789999999999999998999999995 2 5 79999999999987643211 122333332
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+++||++
T Consensus 63 --------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 --------SSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred --------CCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 246778999999999999999999999999998899999999999875
No 56
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.8e-11 Score=102.17 Aligned_cols=116 Identities=24% Similarity=0.490 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC---Cccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQL 336 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~---~~~~~~~~v~~l~i 336 (426)
+++++.+++++.++++.|.+++.+++||++ . | +++|+++..++++.+......... ...+...++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI-- 72 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH--
Confidence 467889999999999999999999999995 2 5 799999999999876532211000 000111122222
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+ ..++.++.+++++.+|+++|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 73 ---~-------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 73 ---M-------TRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred ---c-------cCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 2 247788999999999999999999999999997 99999999999875
No 57
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=2.3e-11 Score=100.18 Aligned_cols=111 Identities=21% Similarity=0.385 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+.+.+++||+++ ++ +++|+++..++++.+...... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~~---- 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTLPVADVM---- 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccCCHHHhh----
Confidence 3456889999999999998888999999952 35 699999999999877643211 112333333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+++...+||+|++|+++|+|+..||++
T Consensus 66 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 66 --------TRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred --------ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 246678999999999999999999999999998899999999999975
No 58
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.32 E-value=2.5e-11 Score=100.97 Aligned_cols=117 Identities=22% Similarity=0.303 Sum_probs=89.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc---cccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL---PILQQPVSSIQL 336 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~---~~~~~~v~~l~i 336 (426)
++.++.++.++.++++.|.+.+...+||++ + | +++|+++..+++++............ .....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD--R--G---KLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDI-- 72 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec--C--C---eEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHh--
Confidence 456789999999999999999999999995 2 5 69999999999987643221110000 0001122222
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||+.||++
T Consensus 73 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 73 ----------MTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ----------ccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 2357788999999999999999999999999998899999999999975
No 59
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=2.3e-11 Score=104.42 Aligned_cols=116 Identities=18% Similarity=0.310 Sum_probs=88.9
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccc-cCCC---------------c
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSS---------------L 324 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~-~~~~---------------~ 324 (426)
+.++.+++++.+|+..|.+++...+||+| +.+ +++|+++..|+++.+...... .... .
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVD---DNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYV 76 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEEC---CCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccc
Confidence 46789999999999999999999999995 235 699999999999876432110 0000 0
Q ss_pred cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 325 ~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.....++.++ +.+++.++.+++++.+|++.|.+++++.+||+++ |+++|+||++||++
T Consensus 77 ~~~~~~v~~~------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 77 KEVPLVAEDI------------MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred ccccccHHHh------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 0001223333 2357788999999999999999999999999997 99999999999875
No 60
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2e-11 Score=103.85 Aligned_cols=117 Identities=21% Similarity=0.375 Sum_probs=89.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC---Ccc----------c
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLP----------I 326 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~---~~~----------~ 326 (426)
+++++.+++++.+|++.|.+.+++++||+|+ ++ +++|+++..++++++......... ... +
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL 75 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence 4578899999999999999999999999952 35 699999999999877543211000 000 0
Q ss_pred cccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 327 ~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
...++.++ +.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|++|++|+++
T Consensus 76 ~~~~v~~~------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEI------------MTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHh------------ccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00122222 2356788999999999999999999999999998 99999999999985
No 61
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.31 E-value=4.3e-11 Score=97.66 Aligned_cols=106 Identities=21% Similarity=0.346 Sum_probs=87.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
.+..+.++.++.+++..|.+++..++||+++ ++ +++|+++..|+++..... .++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~------------~~v~~~~---- 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKEA------------KSLEDIM---- 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhcC------------CcHhHhh----
Confidence 4567899999999999999999999999952 35 699999999998754211 1233333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+.+.++.+++++.+|++.|.+++.+.+||+|++|+++|++|+.|+++
T Consensus 61 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 --------LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred --------cCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 135678999999999999999999999999999899999999999874
No 62
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=1.7e-11 Score=126.67 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=91.9
Q ss_pred eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccc
Q 014342 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (426)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (426)
+++.|++++.+|++.|.+++++.+||+|+..+++ +++|+||..||.... ...+.++.++|...
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~~V~dIMt~~--- 170 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDTKVKDFMTPF--- 170 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCCCHHHHhCCC---
Confidence 5899999999999999999999999996321246 799999999985320 11245566666311
Q ss_pred ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (426)
Q Consensus 342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~ 396 (426)
.+++++.+++++.+|+++|.+++++.|||||++|+++|+||++||++.
T Consensus 171 -------~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 171 -------EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred -------CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 278899999999999999999999999999998999999999999875
No 63
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.3e-11 Score=100.73 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=90.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC---ccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS---LPILQQPVSSIQL 336 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~---~~~~~~~v~~l~i 336 (426)
+++++.+++++.+|++.|.+.+++++||++ + | +++|+++..++++.+.......... ......++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIM- 73 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhh-
Confidence 357789999999999999999999999995 2 5 6999999999998765432110000 000112233222
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.++++++.+++++.+|++.|.+++...+||+|++|+++|++++.|+++
T Consensus 74 -----------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 74 -----------TRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred -----------cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 257788999999999999999999999999998899999999999986
No 64
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.31 E-value=2.6e-11 Score=125.43 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=96.6
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|.++++++.+++++.+|+++|.+++++.+||+|++..++ +++|+||..|+.... ..+.+|.++|.
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~V~eIMt 170 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETKLSEVMT 170 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCcHHHHhc
Confidence 457889999999999999999999999999996311135 799999999986421 12445666652
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
.. .+++++.+++++.+|+++|.+++++.+||||++|+++|+||++||++....
T Consensus 171 ~~----------~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 171 SD----------DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cC----------CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 11 137899999999999999999999999999999999999999999987654
No 65
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.6e-11 Score=102.30 Aligned_cols=125 Identities=26% Similarity=0.360 Sum_probs=89.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.++.+|++.|.++++..+||+|++ ++++|+++..|+........... .........+........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 74 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLL------LYRTITFKELSEKFTDSD 74 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhh------cccchhhhhhhhhccccc
Confidence 57889999999999999999999999999964 79999999999876542111000 000000000000000000
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
..+..+++++.+++++.+|+++|.+++.+++||+++ ++ +++|++|..||+++
T Consensus 75 ---------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dil~~ 126 (126)
T cd04642 75 ---------GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EG---KPIGVITLTDIISI 126 (126)
T ss_pred ---------ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CC---CEEEEEEHHHHhcC
Confidence 124567889999999999999999999999999952 35 69999999999863
No 66
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.30 E-value=4.2e-11 Score=99.10 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=84.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.+++++.+|++.|.+++...+||+|+...+| +++|+++..|++.... . ..++.+++.
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~-~-----------~~~v~~~~~--- 64 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD-S-----------ETPLSEVMT--- 64 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc-c-----------CCCHHHhcC---
Confidence 356788999999999999999999999996311145 7999999999864211 0 122444432
Q ss_pred ccccCCCCCCCeEEEcC--CCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~--~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
++..++.. ++++.+|++.|.+++...+||||++|+++|+||++||++
T Consensus 65 ---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 65 ---------PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ---------CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 23445555 999999999999999999999998899999999999874
No 67
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.30 E-value=7e-11 Score=114.52 Aligned_cols=171 Identities=15% Similarity=0.212 Sum_probs=122.4
Q ss_pred HHHHHHH--hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC
Q 014342 145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 222 (426)
Q Consensus 145 ~~~~~~~--l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~ 222 (426)
++-+... |.+.++.++|..-..+++++.+.|+.++++.+.+++.+.+||++.+.++++|+|+.+|++..+. ....
T Consensus 55 ~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~---~~~~ 131 (292)
T PRK15094 55 RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR---SDAE 131 (292)
T ss_pred HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh---ccCC
Confidence 3344444 5688999999887789999999999999999999999999999865578999999999875432 1000
Q ss_pred CCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342 223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (426)
Q Consensus 223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG 302 (426)
. ..+..+ |. +++++.+++++.++++.|.+++.+.+||+| +.| .++|
T Consensus 132 ~--------~~l~~l-------------------~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---e~G---~viG 177 (292)
T PRK15094 132 A--------FSMDKV-------------------LR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSG 177 (292)
T ss_pred c--------CCHHHH-------------------cC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---CCC---CEEE
Confidence 0 011111 23 445899999999999999999999999996 235 5999
Q ss_pred EecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHH
Q 014342 303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (426)
Q Consensus 303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m 367 (426)
+||..||+..+......-.. ..-...+..+.- .-..+....++.+..+.+
T Consensus 178 iVTleDIle~ivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 178 LVTIEDILELIVGEIEDEYD--EEDDIDFRQLSR-------------HTWTVRALASIEDFNEAF 227 (292)
T ss_pred EeEHHHHHHHHhCCCccccc--cccccccEEeCC-------------CeEEEEeccCHHHHHHHh
Confidence 99999999998764332110 000011222222 234577888888887776
No 68
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4.5e-11 Score=98.27 Aligned_cols=109 Identities=19% Similarity=0.392 Sum_probs=86.4
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
+.++.+++++.++++.|.+++.+.++|.+ + | +++|+++..|+++.+...... ....++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~~----- 64 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME---R-G---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAIM----- 64 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHHh-----
Confidence 46789999999999999888888887763 2 5 799999999999876532111 1122344433
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+++...+||+| +|+++|+||++||++
T Consensus 65 -------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 65 -------NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -------CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 24667899999999999999999999999998 589999999999975
No 69
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=5e-11 Score=98.05 Aligned_cols=110 Identities=20% Similarity=0.340 Sum_probs=87.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH-HHHhhccccCCCccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~-~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++.++.+++++.+|.+.|.+++.+++||++ + | +++|+++..+++. .+.... .....++.+++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~~~~~~~-- 65 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTTVGDVMT-- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCCHHHhcc--
Confidence 457889999999999999999999999995 2 5 7999999999873 332211 111122444431
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..+.++.+++++.++++.|.+.+.+++||+|++|+++|++++.|+++
T Consensus 66 ----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 66 ----------RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ----------CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 35678999999999999999999999999998899999999999875
No 70
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.30 E-value=5e-11 Score=97.93 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=87.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
+++++.++.++.++++.|.+++...+||++ + + +++|+++..++++.+..... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~~---- 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEIA---- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCCCHHHHh----
Confidence 356789999999999999999999999995 2 4 69999999999886542110 1123344433
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++++++++.+++++|.+++...+||+|+ |+++|+||..|+++
T Consensus 64 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 64 --------TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred --------CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 246778999999999999999999999999985 89999999999875
No 71
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3e-11 Score=100.91 Aligned_cols=118 Identities=22% Similarity=0.403 Sum_probs=89.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc--ccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL--PILQQPVSSIQLG 337 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~--~~~~~~v~~l~i~ 337 (426)
.++++.+++++.++++.|.+.+.+++||++ ..| +++|+++..++++............. .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ---KAG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIM-- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHh--
Confidence 467899999999999999999999999995 235 69999999999875321100000000 00112222222
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|+.||++
T Consensus 74 ----------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 74 ----------STPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ----------cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 246788999999999999999999999999998899999999999875
No 72
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=7.4e-11 Score=97.69 Aligned_cols=112 Identities=25% Similarity=0.383 Sum_probs=87.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.++..++|+.+|++.|.+++...+||+|+ +++++|++|..|+...+...... ....++..+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~--------~~~~~v~~~-------- 64 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGP--------GCTAPVENV-------- 64 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCC--------cccCCHHHH--------
Confidence 4778899999999999999999999999995 47899999999987654321000 000011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+++++.+++++.+|++.|.+++.+++||+++ +| +++|++|.+|+++
T Consensus 65 -----------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 -----------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK 113 (114)
T ss_pred -----------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence 3457788999999999999999999999999952 35 6999999999874
No 73
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.30 E-value=3.7e-11 Score=98.82 Aligned_cols=111 Identities=27% Similarity=0.360 Sum_probs=89.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+.++.++||+++ ++ +++|+++..++++++..... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~-------~~~~~v~~~~---- 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL-------YDLVVASDIM---- 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc-------cccEEHHHhc----
Confidence 4567899999999999999999999999952 35 69999999999887542210 0013333333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC-CCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~-~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..||+.
T Consensus 65 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 --------TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred --------cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 246778999999999999999999999999997 799999999999875
No 74
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.6e-11 Score=101.50 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=85.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH-----HhhccccCCCccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI-----CRHFKHSSSSLPILQQPVSSI 334 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l-----~~~~~~~~~~~~~~~~~v~~l 334 (426)
+++++.+++++.+|++.|.+.+.+.+||+++ .| +++|+++..|+++.. ..... .....++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~------~~~~~~v~~i 69 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGGI------SRSELTVADV 69 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcCC------CchheEHHHh
Confidence 3578899999999999999999999999952 35 699999999998632 11100 1123345555
Q ss_pred cccccccccCCCCCCCeEEE----cCCCCHHHHHHHHHhcCCcEeeEEcCC-CcEEEEEeHHHHHH
Q 014342 335 QLGTWVPRIGEANGRPFAML----RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 395 (426)
Q Consensus 335 ~i~~~~~~~~~~~~~~v~tv----~~~~~l~~a~~~m~~~~i~~lPVVd~~-g~lvGiis~~DI~~ 395 (426)
|...+ ..+.+ .+++++.+|+++|.+++++.+||+|++ |+++|+||++||++
T Consensus 70 m~~~~----------~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 70 MTPKE----------DLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred cCchh----------hhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 42111 11223 368899999999999999999999987 89999999999875
No 75
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.29 E-value=8e-11 Score=119.44 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=121.2
Q ss_pred hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (426)
Q Consensus 152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~ 231 (426)
|++.++.|+|..-.++++++.+.|+.++++.+.+++.+++||++++.++++|+++.+|++..+. . . .
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~--------~ 254 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--K--------N 254 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--C--------C
Confidence 5588999999998899999999999999999999999999999976679999999999874321 0 0 0
Q ss_pred cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
..+..+ + +++.++.+++++.++++.|.+++.|..+|+| +.| .++|+||..||++
T Consensus 255 ~~l~~~-------------------~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---E~G---~~~GiVT~eDile 308 (408)
T TIGR03520 255 FDWQSL-------------------L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD---EYG---GTSGLVTLEDIIE 308 (408)
T ss_pred CCHHHH-------------------c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---CCC---CEEEEEEHHHHHH
Confidence 011111 2 4567899999999999999999999999995 335 5999999999999
Q ss_pred HHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHH
Q 014342 312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (426)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m 367 (426)
.+......... .-...+..+. .....+....++.++.+.|
T Consensus 309 eivgei~de~d---~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 309 EIVGDISDEFD---DEDLIYSKID-------------DNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred HHhCCCCCcCC---cCccceEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence 98644321100 0011122221 1334678889999998888
No 76
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.29 E-value=1.7e-11 Score=96.59 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=61.3
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEE-ecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeE
Q 014342 22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (426)
Q Consensus 22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~-~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn~ 99 (426)
.++|+. ...|++|.|.|+|++|.. .+|.+.+ +|.|++++ .|++|.|+|+|+|||.|+.||.++...-..+...|.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 478884 556899999999998875 7898875 79999998 488899999999999999999999766444444333
No 77
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=7.3e-11 Score=99.06 Aligned_cols=120 Identities=14% Similarity=0.191 Sum_probs=87.8
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.+.+++.+.++.+|++.|.++++.++||+|+++++++|+++..|++..+........ . .+. ..+. ....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~~~------~~~~-~~~~- 70 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP-G--LDP------LYPI-PLRD- 70 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc-c--hhh------hhhh-hhhh-
Confidence 457789999999999999999999999999644789999999999876542211100 0 000 0000 0000
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil 310 (426)
...|..++.++.+++++.+|++.|.+++++++||+++ .+ +++|+||.+|+.
T Consensus 71 --------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~vGiit~~di~ 121 (123)
T cd04627 71 --------LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QG---NLIGNISVTDVR 121 (123)
T ss_pred --------cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CC---cEEEEEeHHHhh
Confidence 0024577889999999999999999999999999952 35 699999999974
No 78
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=4.3e-11 Score=122.97 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=95.2
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|..+++++.+++++.+|++.|.+++++++||+| +++ +++|+||.+|+... .. ..++.++|
T Consensus 95 Mi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~-----~~--------~~~V~diM- 154 (479)
T PRK07807 95 VFDTPVTLSPDDTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV-----DR--------FTQVRDVM- 154 (479)
T ss_pred cccCCeEECCCCCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC-----cc--------CCCHHHhc-
Confidence 577889999999999999999999999999995 245 79999999998421 10 13355554
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
.++++++++++++.+|+++|.++++..+||||++|+++|+||++||++.....
T Consensus 155 -----------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 155 -----------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred -----------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 25788999999999999999999999999999989999999999999866543
No 79
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.27 E-value=5.3e-11 Score=97.22 Aligned_cols=108 Identities=20% Similarity=0.412 Sum_probs=85.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.+|+..|.+++++++||++ + + +++|+++..|+++.+...... ...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~~---- 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVREVM---- 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHHh----
Confidence 457889999999999999999999999995 2 5 699999999999876533211 112233332
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+ . ..+|||+++|+++|+||++||++
T Consensus 64 --------~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 64 --------GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred --------cCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 2467789999999999999988 3 34899998899999999999985
No 80
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6e-11 Score=100.21 Aligned_cols=118 Identities=18% Similarity=0.352 Sum_probs=88.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccC--C----Ccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS--S----SLPILQQPVSS 333 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~--~----~~~~~~~~v~~ 333 (426)
+++++.+++++.+|++.|.+.+++.+||+++ ++ +++|++|..|+++++........ . .......++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH
Confidence 3567899999999999999999999999952 35 69999999999876543210000 0 00011222333
Q ss_pred ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEc--CCCcEEEEEeHHHHHH
Q 014342 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA 395 (426)
Q Consensus 334 l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd--~~g~lvGiis~~DI~~ 395 (426)
++ .++++++.+++++.+|++.|.+.++..+||++ ++|+++|+||++||++
T Consensus 76 ~~------------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 76 AM------------SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred Hh------------cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 32 25788999999999999999999999999994 4699999999999875
No 81
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=1.2e-10 Score=95.76 Aligned_cols=110 Identities=21% Similarity=0.397 Sum_probs=87.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+.+.+.+||+++ + +++|+++..|+++.+...... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~~---- 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREVPVGEVM---- 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccCCHHHhc----
Confidence 4577899999999999999999999999952 3 599999999999876432110 0122333333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+++++|.+++...+||+|++ +++|+|++.||++
T Consensus 65 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 65 --------STPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred --------CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 1467789999999999999999999999999865 9999999999874
No 82
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.26 E-value=5.5e-11 Score=117.45 Aligned_cols=124 Identities=12% Similarity=0.187 Sum_probs=97.0
Q ss_pred ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (426)
Q Consensus 153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~ 232 (426)
...++.|+|.....+++++++.|+.+|++.|.++++..+||+|+ +++++|+||..|+...+.... .+...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~---------~~~~~ 269 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI---------DLRQA 269 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC---------CcccC
Confidence 34567888986557889999999999999999999888888885 579999999999876432100 00011
Q ss_pred chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
++. . .|+++++++.+++++.+|++.|.+++++++||++ ++ +++|+||++||++.
T Consensus 270 ~v~-------~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~----~~---~lvGiit~~dil~~ 323 (326)
T PRK10892 270 SIA-------D------------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD----GD---HLLGVLHMHDLLRA 323 (326)
T ss_pred CHH-------H------------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee----CC---EEEEEEEhHHhHhc
Confidence 111 1 2467889999999999999999999999999994 35 79999999999874
No 83
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=2e-10 Score=94.87 Aligned_cols=112 Identities=18% Similarity=0.311 Sum_probs=87.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.+.++.++.++.+|++.|.++++..+||.|.+.++++|++|..|+...+...... ....++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~--------~~~~~v~~~-------- 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD--------PDRVNVYEI-------- 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC--------CCccCHHHH--------
Confidence 4678899999999999999999999999985437999999999987755321100 000111111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+++++.+++++.+|++.|.+.+.+.+||++ + | +++|+||..|+++
T Consensus 66 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~-~---~~~Gvi~~~dl~~ 113 (114)
T cd04630 66 -----------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE---N-N---ELIGIISLTDIFL 113 (114)
T ss_pred -----------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee---C-C---EEEEEEEHHHhhc
Confidence 245678999999999999999999999999995 2 5 7999999999875
No 84
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.7e-10 Score=93.87 Aligned_cols=105 Identities=21% Similarity=0.439 Sum_probs=86.3
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++++++.++.++.++++.|.+.+.+.+||++ + + +++|+++..|+++. . ...++.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~-----~--------~~~~~~~~~--- 58 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK-----D--------PDETVEEIM--- 58 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc-----C--------ccccHHHhC---
Confidence 3567889999999999999888888999995 2 5 79999999998752 0 012333333
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|+++|.+++...+||+|++|+++|+|+..||++
T Consensus 59 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 59 ---------SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ---------CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 135678999999999999999999999999999999999999999874
No 85
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.22 E-value=1.1e-10 Score=113.09 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=96.6
Q ss_pred CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342 257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (426)
Q Consensus 257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l 334 (426)
|++ .++++.+++++.++++.+.+.+.+++||+++ ..+ +++|+++.+|++..+..... ..++.++
T Consensus 73 Mtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~~---------~~~l~~l 138 (292)
T PRK15094 73 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDAE---------AFSMDKV 138 (292)
T ss_pred ccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccCC---------cCCHHHH
Confidence 454 6899999999999999999999999999953 224 69999999999975532100 1123333
Q ss_pred cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccccc
Q 014342 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ 404 (426)
Q Consensus 335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~ 404 (426)
+ ++++++.+++++.+|++.|.+++.+.+||||+.|.++|+||..||+..+....+..
T Consensus 139 ~-------------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 139 L-------------RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred c-------------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccc
Confidence 2 35568999999999999999999999999999999999999999999777654433
No 86
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=1.9e-10 Score=93.31 Aligned_cols=102 Identities=19% Similarity=0.385 Sum_probs=84.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+++.+.+||++ + + +++|+++..++++.. . ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~Giv~~~~l~~~~----~---------~~~~~~~~---- 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---D-G---KLVGIITSRDVRRAH----P---------NRLVADAM---- 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEehHHhhccc----c---------cCCHHHHc----
Confidence 456789999999999999989999999994 2 5 699999999997631 0 12233333
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~ 394 (426)
.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|+||..||+
T Consensus 58 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 58 --------TREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred --------cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 146778999999999999999999999999997 9999999999987
No 87
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=1.9e-10 Score=92.61 Aligned_cols=94 Identities=23% Similarity=0.410 Sum_probs=80.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.+++++++.++.+|++.|.++++..+||+|+ .++++|++|..|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~-------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK-------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence 4678899999999999999999999999985 4799999999996521
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
..+.++.+++++.+|++.|.+++.+++||+++ .| +++|++|++|+++
T Consensus 49 -------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~---~~~Giit~~di~~ 95 (96)
T cd04614 49 -------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---ND---KLIGLLRDHDLLK 95 (96)
T ss_pred -------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 01467899999999999999999999999952 35 6999999999875
No 88
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.21 E-value=1.5e-10 Score=94.67 Aligned_cols=106 Identities=21% Similarity=0.335 Sum_probs=84.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+++..++||+++ .| +++|+++..+++.... ...++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~------------~~~~v~~~~~--- 61 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFETD------------LDKPVSEVMT--- 61 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeeccc------------CCCCHHHhcc---
Confidence 4577899999999999999999999999952 35 7999999999864210 1223333331
Q ss_pred ccccCCCCCCCeEEEcC-CCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~-~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+++..+.+ ++++.+|+++|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 62 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 62 ---------PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ---------cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 23445566 999999999999999999999998899999999999875
No 89
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.21 E-value=1.8e-10 Score=118.20 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=93.5
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|.++++++.+++++.++++.|.+++++.+||++ ++ +++|+||.+|+... . ...++.++|
T Consensus 94 m~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~-----~--------~~~~V~dIM- 152 (475)
T TIGR01303 94 VLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV-----D--------RFTQVRDIM- 152 (475)
T ss_pred cccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC-----C--------CCCCHHHHc-
Confidence 467789999999999999999999999999985 24 69999999998421 1 013455554
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
.++++++.+++++.+|+++|.+++++.+||||++|+++|+||++||++.....
T Consensus 153 -----------t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 153 -----------STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred -----------cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 25788999999999999999999999999999999999999999999865543
No 90
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.21 E-value=1.1e-10 Score=120.68 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=94.1
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
+..+++++.|++++.+|+++|.+++++.+||++++..++ +++|++|.+|+... . ....+|.++|.
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~~-----~-------~~~~~V~diMt 166 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDFV-----K-------DKSTPVSEVMT 166 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhhc-----c-------cCCCCHHHhhC
Confidence 356778999999999999999999999999996422235 79999999998621 1 01344555552
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~ 397 (426)
. ..+++++.+++++.+|+++|.++++..+||||++++++|+||++||++..
T Consensus 167 --~--------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 167 --P--------REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred --C--------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 0 02688999999999999999999999999999999999999999998753
No 91
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.21 E-value=2.5e-10 Score=92.92 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=83.1
Q ss_pred eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccc
Q 014342 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (426)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (426)
+++.++.++.++++.|.+.+.+++||++ + + +++|+++..++++... .++.+++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~~~~~----- 57 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVVDYIV----- 57 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchhhhhh-----
Confidence 4688999999999999999999999995 2 5 7999999999876311 12223321
Q ss_pred ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+..++.+++++.+|++.|.+++.+.+||+| +|+++|+||.+||++
T Consensus 58 -------~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 58 -------RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -------cCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 3567899999999999999999999999998 599999999999874
No 92
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.20 E-value=1.5e-09 Score=112.74 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=119.9
Q ss_pred cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhh
Q 014342 158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237 (426)
Q Consensus 158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~ 237 (426)
.++|- .++++++++.++.+|+++|.++++..+||+|+ .++++|+||..|+.... . . ...+.++
T Consensus 90 ~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~----~------~~~V~di 152 (486)
T PRK05567 90 ESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----D----L------SQPVSEV 152 (486)
T ss_pred hhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----c----C------CCcHHHH
Confidence 34554 37888999999999999999999999999995 57999999999974210 0 0 0011111
Q ss_pred HHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342 238 KVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (426)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~-~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~ 316 (426)
|. ++++++.+++++.++++.|.+++++.+||+| +.+ +++|+||.+||++.+...
T Consensus 153 -------------------m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD---e~g---~lvGiIT~~DLl~~~~~p 207 (486)
T PRK05567 153 -------------------MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD---DNG---RLKGLITVKDIEKAEEFP 207 (486)
T ss_pred -------------------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEEhHHhhhhhhCC
Confidence 24 6788999999999999999999999999995 345 699999999999875311
Q ss_pred ccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC-CCcEEEEEeHHHHH
Q 014342 317 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDIT 394 (426)
Q Consensus 317 ~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~-~g~lvGiis~~DI~ 394 (426)
... ...-..+.++. .+...+ .-.++++.|.+.++..+ |+|. +|+..|+++..+.+
T Consensus 208 --~a~------~d~~g~l~V~a------------ai~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i 263 (486)
T PRK05567 208 --NAC------KDEQGRLRVGA------------AVGVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREI 263 (486)
T ss_pred --Ccc------cccCCCEEEEe------------ecccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHH
Confidence 000 00111122222 122233 23788888999999965 6664 57777766554443
No 93
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.20 E-value=7.8e-11 Score=121.15 Aligned_cols=180 Identities=15% Similarity=0.230 Sum_probs=134.3
Q ss_pred HHHHHHHhc--cccccccCCCCCcEEEEcCCccHHHHHHHHHH-----CCCCeeeeeeCCCCcEEEEeehHHHHHHHHHh
Q 014342 145 RDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILREL 217 (426)
Q Consensus 145 ~~~~~~~l~--~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~-----~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~ 217 (426)
++.++..+. +.++.++|.. .+++++.+.|+.+|++.|.+ +++..+||+|+ .++++|+++.+|++..
T Consensus 119 r~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a---- 191 (449)
T TIGR00400 119 RKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA---- 191 (449)
T ss_pred HHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC----
Confidence 444555544 7889999974 78999999999999999986 56778899985 4799999999997521
Q ss_pred ccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCc
Q 014342 218 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 297 (426)
Q Consensus 218 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~ 297 (426)
. . + ..++.+ |.++++++.+++++.+|++.|.++++..+||+| +.|
T Consensus 192 -~-~-----~----~~v~~i-------------------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD---~~g-- 236 (449)
T TIGR00400 192 -K-P-----E----EILSSI-------------------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD---NEG-- 236 (449)
T ss_pred -C-C-----C----CcHHHH-------------------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc---CCC--
Confidence 0 0 0 011221 356678899999999999999999999999995 245
Q ss_pred ceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeE
Q 014342 298 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377 (426)
Q Consensus 298 ~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPV 377 (426)
+++|+||.+|+++.+.+... ++++. ...++..+++++.+++..|.++++..++|
T Consensus 237 -~lvGiIt~~Dil~~l~~~~~-------------ed~~~------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v 290 (449)
T TIGR00400 237 -RLVGIVTVDDIIDVIQSEAT-------------EDFYM------------IAAVKPLDDSYFDTSILVMAKNRIIWLLV 290 (449)
T ss_pred -eEEEEEEHHHHHHHHHhhhH-------------HHHHH------------hcCCCCCcchhhhchHHHHHHhccchHHH
Confidence 69999999999998875422 11221 12223345778899999999999999998
Q ss_pred EcCCCcEEEEEeHHHHHHHH
Q 014342 378 VDDNDSLLDIYSRSDITALA 397 (426)
Q Consensus 378 Vd~~g~lvGiis~~DI~~~~ 397 (426)
. .+.|+++ ..++..+
T Consensus 291 ~----~~~~~~t-~~ii~~f 305 (449)
T TIGR00400 291 L----LVSSTFT-ATIISNY 305 (449)
T ss_pred H----HHHHHHH-HHHHHHH
Confidence 6 5778887 6666643
No 94
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.19 E-value=4.8e-10 Score=91.01 Aligned_cols=111 Identities=23% Similarity=0.446 Sum_probs=89.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (426)
++.++.+++++.++++.|.+++.+++||+++ ++ +++|+++..++++.+........ ..+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~~---- 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------VTVGDVM---- 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------ccHHHHh----
Confidence 3567889999999999999999999999953 24 69999999999987764322100 0012222
Q ss_pred ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 65 --------TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --------cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 246778999999999999999999999999999999999999999875
No 95
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.19 E-value=1.7e-10 Score=122.38 Aligned_cols=118 Identities=16% Similarity=0.274 Sum_probs=95.2
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|.+++.++++++++.++.+.|.+++.+.+||+|+ ++ +++|+++.+|+.+.+..... ....++.+++
T Consensus 453 m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v~dim- 518 (574)
T PRK01862 453 IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRD-------TTDKTAADYA- 518 (574)
T ss_pred hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhcccc-------cccchHHHhc-
Confidence 5677788999999999999999999999999962 35 79999999999886542211 0122344443
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC--CcEEEEEeHHHHHHHHhc
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKD 399 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~--g~lvGiis~~DI~~~~~~ 399 (426)
.+++.++++++++.+|+++|.+++++.+||||++ ++++|+||++||++.+.+
T Consensus 519 -----------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 519 -----------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred -----------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 2467789999999999999999999999999976 589999999999987543
No 96
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.19 E-value=1.7e-10 Score=118.46 Aligned_cols=116 Identities=19% Similarity=0.298 Sum_probs=94.5
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|.++++++.+++++.++++.|.+++++++||++++...+ +++|+||.+|++... . ...++.+++.
T Consensus 86 ~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~dvm~ 150 (450)
T TIGR01302 86 IISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSEVMT 150 (450)
T ss_pred eecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHHhhC
Confidence 456789999999999999999999999999996321114 699999999997421 0 1234444441
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~ 398 (426)
. ++++++.+++++.+|+++|.++++..+||||++|+++|+||+.||++...
T Consensus 151 ~-----------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 151 R-----------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred C-----------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 0 27889999999999999999999999999999999999999999998653
No 97
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.19 E-value=3.1e-10 Score=94.49 Aligned_cols=117 Identities=19% Similarity=0.374 Sum_probs=88.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC--cccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS--LPILQQPVSSIQLG 337 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~--~~~~~~~v~~l~i~ 337 (426)
++.++.+++++.+|++.|.+.+..++||+|+ ++ +++|+++..++++............ ......++.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-- 73 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM-- 73 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--
Confidence 4577899999999999999999999999952 35 6999999999987654321110000 000112233322
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.+|+++|.+++...+||+|+ |+++|+++..||++
T Consensus 74 ----------~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 74 ----------TKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred ----------hCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 246778999999999999999999999999987 99999999999874
No 98
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.19 E-value=5.1e-10 Score=91.74 Aligned_cols=109 Identities=19% Similarity=0.324 Sum_probs=86.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.++++..+.++.+|.+.|.++++..+||+|+++++++|++|..|+...+..-. . . ..+..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~---~----~----~~~~~~-------- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---E----D----LDLRDL-------- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC---C----c----CCHHHH--------
Confidence 57889999999999999999999999999864379999999999887553110 0 0 011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
+ +++.++.+++++.++++.|.+++.+.+||+++ +| +++|++|++|+++
T Consensus 63 -----------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~ 110 (111)
T cd04590 63 -----------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE 110 (111)
T ss_pred -----------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence 2 35678999999999999999999999999962 35 6999999999874
No 99
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=6.1e-10 Score=91.32 Aligned_cols=111 Identities=22% Similarity=0.387 Sum_probs=87.3
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|.+.|.+++...+||+|++ ++++|+++..|++..+...... ....++..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~--------~~~~~~~~--------- 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS--------ALDTPVSE--------- 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCC--------ccccCHHH---------
Confidence 46778999999999999999999999999964 6999999999988755321100 00001111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.++++.|.+.+.+.+||++ + + +++|++|..|+++
T Consensus 64 ----------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~ 112 (113)
T cd04623 64 ----------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD---G-G---KLVGIVSIGDVVK 112 (113)
T ss_pred ----------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe---C-C---EEEEEEEHHHhhc
Confidence 1345778899999999999999999999999995 2 5 7999999999976
No 100
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=1.1e-09 Score=112.71 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=128.8
Q ss_pred HHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhh
Q 014342 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228 (426)
Q Consensus 149 ~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~ 228 (426)
.+.+...+..++|-. .++++.++.++.+|+++|.++++.++||+|+ +++++|+||..|+... . . .
T Consensus 83 ~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~-----~---~---~- 147 (479)
T PRK07807 83 AEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV-----D---R---F- 147 (479)
T ss_pred HHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC-----c---c---C-
Confidence 345556677788755 6788999999999999999999999999995 5799999999997310 0 0 0
Q ss_pred hcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHh
Q 014342 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (426)
Q Consensus 229 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~d 308 (426)
..+.+ .|+.+++++.+++++.+|+.+|.+++++.+||+|+ ++ +++|+||.+|
T Consensus 148 ---~~V~d-------------------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~D 199 (479)
T PRK07807 148 ---TQVRD-------------------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRTG 199 (479)
T ss_pred ---CCHHH-------------------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHHH
Confidence 01121 14678899999999999999999999999999952 35 7999999999
Q ss_pred HHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC-CCcEEEE
Q 014342 309 ILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDI 387 (426)
Q Consensus 309 il~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~-~g~lvGi 387 (426)
|++......... .. ..+.++ ..+ .......+.++.|.+.+++.+ ++|- +|. -
T Consensus 200 Il~~~~~~~~~~-------~~--g~l~V~------------aav--~~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~ 252 (479)
T PRK07807 200 ALRATIYTPAVD-------AA--GRLRVA------------AAV--GINGDVAAKARALLEAGVDVL-VVDTAHGH---Q 252 (479)
T ss_pred HHHHhhCCchhh-------hh--hccchH------------hhh--ccChhHHHHHHHHHHhCCCEE-EEeccCCc---c
Confidence 999765321100 00 012211 122 223346788888889999886 6675 554 4
Q ss_pred EeHHHHHHHHhcc
Q 014342 388 YSRSDITALAKDK 400 (426)
Q Consensus 388 is~~DI~~~~~~~ 400 (426)
...-++++.++++
T Consensus 253 ~~~~~~i~~ik~~ 265 (479)
T PRK07807 253 EKMLEALRAVRAL 265 (479)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666654
No 101
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=5.4e-10 Score=94.33 Aligned_cols=125 Identities=20% Similarity=0.365 Sum_probs=88.3
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhc-cCCCCCChhhhcccchhhhHHHHHhh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
+++.+.++.++.+|+++|.+.++..+||+|++ ++++|++|..|+...+.... .+........... ........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~- 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKER----MLDLPVYD- 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhh----hccCcHHH-
Confidence 45678899999999999999999999999964 79999999999887543211 0000000000000 00000011
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..+++++.+++++.+++..|.+++.+.+||++++ +++ +++|+||.+||++
T Consensus 76 -----------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~ 127 (128)
T cd04632 76 -----------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLR 127 (128)
T ss_pred -----------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhc
Confidence 135678899999999999999999999999998521 335 6999999999875
No 102
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=3e-10 Score=95.07 Aligned_cols=122 Identities=16% Similarity=0.269 Sum_probs=88.9
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
.++++++.+.++.+|.+.|.++++..+||+|++ ++++|+++..|++..+..... ... ...+ .+..... ....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~--~~~-~~~~-~~~~~~~--~i~~- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGR--RPL-RGRL-RGRDKPE--TVGD- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhccccc--chh-hhhh-hcccccc--cHHH-
Confidence 467889999999999999999999999999864 799999999998765431110 000 0000 0000000 0011
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|...++++.+++++.++++.|.+++.+.+||++ +.| +++|++|..|+++
T Consensus 74 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~---~~g---~~~Gvit~~di~~ 123 (124)
T cd04600 74 -----------IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD---EDR---RLVGIVTQTDLIA 123 (124)
T ss_pred -----------hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc---CCC---CEEEEEEhHHhhc
Confidence 2356788999999999999999999999999995 245 6999999999875
No 103
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.3e-10 Score=97.30 Aligned_cols=126 Identities=25% Similarity=0.478 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcccc----CCCcccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS----SSSLPILQQPVSSIQ 335 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~----~~~~~~~~~~v~~l~ 335 (426)
+++++.+++++.++++.|.+.+++.+||++ + + +++|+++..|+++++....... +........++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFI 74 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhee
Confidence 457899999999999999999999999995 2 5 7999999999998775432100 000011111221110
Q ss_pred cccc-----------ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 336 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 336 i~~~-----------~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.| ...+.+.+..++.++.+++++.+|++.|.+++.+.+||+++ |+++|++++.|++.
T Consensus 75 --~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 75 --NWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred --ehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 00 00011223457889999999999999999999999999997 99999999999874
No 104
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=2.8e-10 Score=93.31 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=81.8
Q ss_pred eCCCCCHHHHHHHHHhCC-----CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 264 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 264 v~~~~sl~~a~~~m~~~~-----v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
+.+++++.++++.|.+++ +..+||+++ ++ +++|+++.+++++. . ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~-----~--------~~~~v~~~~--- 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA-----D--------PDTPVSDIM--- 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC-----C--------CcchHHHHh---
Confidence 578999999999998777 468999952 35 69999999998751 0 012233332
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~ 396 (426)
..++.++.+++++.++++.|.+++...+||+|++|+++|+||+.||++.
T Consensus 60 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 60 ---------DTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ---------CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 1467789999999999999999999999999988999999999999864
No 105
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=5.2e-10 Score=93.78 Aligned_cols=121 Identities=21% Similarity=0.355 Sum_probs=88.2
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC--CChhhhcccchhhhHHHHHh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN--LTEEELETHTISAWKVGKLQ 243 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~--~~~~~l~~~~i~~~~~~~~~ 243 (426)
++++++++.++.+|++.|.+++...+||+|+++++++|+++..|+...+......... ..........+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPV-------RS 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCH-------HH
Confidence 4678899999999999999999999999996447999999999988655321100000 00000000001 11
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.+..+++++.+++++.++++.|.+.+.+.+||+++ +| +++|+||..||++
T Consensus 75 ------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~ 124 (125)
T cd04631 75 ------------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLK 124 (125)
T ss_pred ------------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhc
Confidence 13456789999999999999999999999999952 35 6999999999976
No 106
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=3.6e-10 Score=93.88 Aligned_cols=113 Identities=14% Similarity=0.216 Sum_probs=85.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
++.++.+++++.++++.|.+.+ .+.+||++ + | +++|+++..++++++...... ......++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~----~~~~~~~v~~~~--- 67 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGR----ALYGKKPVSEVM--- 67 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhH----HHHcCCcHHHhc---
Confidence 4567889999999999998877 89999995 2 5 799999999998765432100 000122333333
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCc---EeeEEcCCCcEEEEEeHHHHHH
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~---~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.+|++.|.+++.. .+|||+++|+++|+||..|+++
T Consensus 68 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 68 ---------DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ---------CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 24677899999999999999988864 4578988899999999999874
No 107
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.16 E-value=1.1e-09 Score=113.67 Aligned_cols=113 Identities=23% Similarity=0.351 Sum_probs=94.5
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|..+++++.+++++.++++.|.+++++++||++ +.+ +++|+||.+|++... . ...++.+++.
T Consensus 93 m~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~-----~-------~~~~V~dim~ 154 (486)
T PRK05567 93 VVTDPVTVTPDTTLAEALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET-----D-------LSQPVSEVMT 154 (486)
T ss_pred ccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc-----c-------CCCcHHHHcC
Confidence 567889999999999999999999999999995 245 799999999986421 0 1234444441
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~ 398 (426)
.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++...
T Consensus 155 -----------~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 155 -----------KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 037889999999999999999999999999999999999999999998653
No 108
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=5.6e-10 Score=92.19 Aligned_cols=114 Identities=20% Similarity=0.353 Sum_probs=84.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|++.|.++++..+||+|+ .++++|+++..|+...+..... .....+...++. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~----~~~~~~~~~~v~-------~-- 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN----LDLERLVDLKVI-------D-- 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc----hhHHHHhCCcHH-------H--
Confidence 5788999999999999999999999999985 4789999999998765431100 000000011111 1
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.+|+..|.+.+ .+||++ +++ +++|++|..|+++
T Consensus 68 ----------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~---~~~---~~~Gvit~~dil~ 115 (116)
T cd04643 68 ----------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVD---DDG---IFIGIITRREILK 115 (116)
T ss_pred ----------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEe---CCC---eEEEEEEHHHhhc
Confidence 13556788999999999999998755 599995 235 7999999999876
No 109
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.15 E-value=2.6e-10 Score=96.27 Aligned_cols=113 Identities=13% Similarity=0.215 Sum_probs=86.1
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+++++.++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+..-.... ..++.+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~---------~~~v~~--------- 63 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQP---------SDPVSK--------- 63 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCC---------CCcHHH---------
Confidence 4678899999999999999999999999985 478999999999887554211100 001222
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHH---------hCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL---------QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~---------~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l 313 (426)
.|.+++.++.+++++.+++++|. +.+.+++||++ ++| +++||||.+||++++
T Consensus 64 ----------im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~Givt~~Dl~~~~ 124 (124)
T cd04608 64 ----------ALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE---KQE---KPIGIVTKIDLLSYI 124 (124)
T ss_pred ----------HhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc---ccc---ceEEEEehhHhhhhC
Confidence 24677889999999999998643 34678888884 335 699999999999863
No 110
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=6.6e-10 Score=92.71 Aligned_cols=120 Identities=18% Similarity=0.334 Sum_probs=87.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.++.+|++.|.+.++..+||+|. .++++|+++..|+...+.........-.........+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~--------- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH---------
Confidence 5678899999999999999999999999985 479999999999876543211100000000000111111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.+..+++++.+++++.++++.|.+.+.+.+||+++ .| +++|++|..|+++
T Consensus 72 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~ 121 (122)
T cd04803 72 ----------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLR 121 (122)
T ss_pred ----------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhc
Confidence 13456788999999999999999999999999952 35 6999999999875
No 111
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=8.6e-10 Score=90.87 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=86.1
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+.++++.+.++.+|++.|.+++...+||.|+ +++++|++|..|+...+..... . ...+..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~---------~-~~~v~~~-------- 63 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS---------L-DDPVSEV-------- 63 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC---------c-CCCHHHh--------
Confidence 4677899999999999999999999999985 4789999999998764431100 0 0011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.++++.|.+++.+.+||++ ++| +++|+||.+||+.
T Consensus 64 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~Gvit~~di~~ 112 (113)
T cd04607 64 -----------MNRNPITAKVGSSREEILALMRERSIRHLPILD---EEG---RVVGLATLDDLLS 112 (113)
T ss_pred -----------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC---CCC---CEEEEEEhHHhcc
Confidence 245677899999999999999999999999995 235 6999999999864
No 112
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.15 E-value=6.1e-10 Score=91.10 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=83.7
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
...+.+++++.++...|.+.+..++||+++...+| +++|+++..++.+.... ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------~m----- 57 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------YI----- 57 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------hc-----
Confidence 46788999999999999998899999995210035 79999999999876532 11
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
.+++.++.+++++.++++.|.+++.+.+||++ +|+++|++|+.||++
T Consensus 58 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 58 -------DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred -------cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 13566899999999999999999999999995 689999999999875
No 113
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.15 E-value=7.6e-10 Score=91.51 Aligned_cols=112 Identities=18% Similarity=0.289 Sum_probs=86.6
Q ss_pred EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcc
Q 014342 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 246 (426)
Q Consensus 167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 246 (426)
+.++++++++.+|.+.|.+.+...+||+|+ .++++|+++..|+...+..... . ...++..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~----~-----~~~~~~~---------- 62 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEA----G-----EPSAVDE---------- 62 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccc----c-----ccccHHH----------
Confidence 467789999999999999999999999996 4799999999998765532100 0 0000111
Q ss_pred ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 247 ~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|...+.++.+++++.+++++|.+++.+.+||++++ ..| +++|+||.+||++
T Consensus 63 ---------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~-~~~---~~~Gvit~~di~~ 114 (115)
T cd04593 63 ---------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG-NPG---QVLGLLTRENVLL 114 (115)
T ss_pred ---------hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC-CCC---eEEEEEEhHHhhc
Confidence 134567889999999999999999999999999632 125 6999999999875
No 114
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.15 E-value=3.7e-10 Score=111.30 Aligned_cols=123 Identities=17% Similarity=0.253 Sum_probs=98.0
Q ss_pred cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342 154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233 (426)
Q Consensus 154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~ 233 (426)
..++.|+|.++..++++.++.|+.+|++.|.+++...+||+|+ +++++|+||..|+.+.+..- . .. ...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~--~--~~------~~~ 264 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGG--G--AL------TTP 264 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCC--C--Cc------CCc
Confidence 5678888888655888999999999999999999999999995 47999999999987644310 0 00 001
Q ss_pred hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
+. . .|.++++++.+++++.+|++.|.++++.++||+| +++ +++|+||+.|+++.
T Consensus 265 v~-------~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~---~lvGvIt~~di~~~ 318 (321)
T PRK11543 265 VN-------E------------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD---ENG---KLTGAINLQDFYQA 318 (321)
T ss_pred HH-------H------------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHhc
Confidence 11 1 1466788999999999999999999999999995 235 69999999999864
No 115
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.15 E-value=4.5e-10 Score=114.00 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=95.8
Q ss_pred CCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccc
Q 014342 256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (426)
Q Consensus 256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~ 333 (426)
.|++ .++++..++++.++++.|.+++++|+||.++ ..+ +++|+++.+|++.++.. . ..++.+
T Consensus 196 iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d---~ivGiv~~kDll~~~~~--~---------~~~l~~ 259 (408)
T TIGR03520 196 VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TID---NITGVLYIKDLLPHLNK--K---------NFDWQS 259 (408)
T ss_pred eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCC---ceEEEEEHHHHHhHhcc--C---------CCCHHH
Confidence 3554 6899999999999999999999999999963 223 59999999999875421 0 011222
Q ss_pred ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402 (426)
Q Consensus 334 l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~ 402 (426)
+ + +++.++++++++.++++.|.+++.+..+|+||.|.++|+||..||+..+-...+
T Consensus 260 ~-----~--------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~ 315 (408)
T TIGR03520 260 L-----L--------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDIS 315 (408)
T ss_pred H-----c--------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCC
Confidence 2 2 367799999999999999999999999999999999999999999997754444
No 116
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=7.7e-10 Score=90.53 Aligned_cols=108 Identities=19% Similarity=0.410 Sum_probs=86.6
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
.+++++.++.++.+|++.|.+++...+||.|+ .++++|++|..|++..+.... ..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~-------------~~~~~~------- 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK-------------KSVEDI------- 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc-------------cCHHHh-------
Confidence 35678899999999999999999999999985 479999999999875443100 001111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.+|++.|.+++.+.+||++ ++| +++|++|+.|+++
T Consensus 61 ------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~v~~~di~~ 109 (110)
T cd04605 61 ------------MTRNVITATPDEPIDVAARKMERHNISALPVVD---AEN---RVIGIITSEDISK 109 (110)
T ss_pred ------------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC---CCC---cEEEEEEHHHhhh
Confidence 245678899999999999999999999999995 235 7999999999864
No 117
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.14 E-value=3.9e-10 Score=113.76 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=98.8
Q ss_pred cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235 (426)
Q Consensus 156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~ 235 (426)
.+.+++.. +.+++++.+|+.+|...|.++|+.++.+++. .+...||+|.+|+...+..-... .
T Consensus 150 rv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~----------- 212 (610)
T COG2905 150 RVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---K----------- 212 (610)
T ss_pred HHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---c-----------
Confidence 45556655 6788999999999999999999999888884 57899999999998765431110 0
Q ss_pred hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR 315 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~ 315 (426)
...+. ..|+.|++++.+.+.+++|+-+|.+++++++||+ ++| +++||||..||++....
T Consensus 213 --~~~V~------------evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~----e~g---q~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 213 --TQKVS------------EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT----EDG---QPLGILTLTDILRLFSQ 271 (610)
T ss_pred --ccchh------------hhhccCceeecCcchHHHHHHHHHHhCCceeeee----cCC---eeeEEeeHHHHHHhhCC
Confidence 00111 1379999999999999999999999999999999 357 89999999999997664
Q ss_pred h
Q 014342 316 H 316 (426)
Q Consensus 316 ~ 316 (426)
+
T Consensus 272 ~ 272 (610)
T COG2905 272 N 272 (610)
T ss_pred C
Confidence 4
No 118
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=7.5e-10 Score=94.13 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC--CChhh-hcccchhhhHH-HH
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN--LTEEE-LETHTISAWKV-GK 241 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~--~~~~~-l~~~~i~~~~~-~~ 241 (426)
.++++.++.++.+|++.|.+++...+||+|+ .++++|+++..|++..+......... ..... .+......+.. ..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 4577899999999999999999999999996 47999999999998765422111000 00000 00000000000 00
Q ss_pred HhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 242 LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
. ..|.+++..+.+++++.+++..|.+.+.+++||++ + | +++|++|..|++++
T Consensus 81 ~------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~iGvit~~dl~~~ 132 (132)
T cd04636 81 E------------EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD---D-G---KLVGIISRGDIIRS 132 (132)
T ss_pred H------------HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE---C-C---EEEEEEEHHHhhcC
Confidence 0 12356678899999999999999999999999995 2 5 79999999999863
No 119
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=5.5e-10 Score=92.18 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=83.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCC-CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~-i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
.+.+++++.++.+|++.|.+++ ...+||+|. .++++|+++..|++........ ..++..+..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~-----------~~~v~~~~~----- 64 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWA-----------QTTVIQVMT----- 64 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhcc-----------ccchhhhhc-----
Confidence 4577899999999999998775 899999985 4789999999998765421100 001111110
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
...++.++.+++++.+|++.|.+++.+++||+++ ++ +++|++|..||++
T Consensus 65 ------------~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~ 113 (114)
T cd04801 65 ------------PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR 113 (114)
T ss_pred ------------ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence 0123568899999999999999999999999952 35 6999999999864
No 120
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.14 E-value=4.1e-10 Score=108.07 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCCC-ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342 257 CPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (426)
Q Consensus 257 ~~~~-~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (426)
|.++ +.++.+++++.++++.|.+.+++++||+|+ +| +++|+++..|+++.+.... ....++.+++
T Consensus 161 m~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~~im 226 (268)
T TIGR00393 161 MQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSEVRDFM 226 (268)
T ss_pred hCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCcHHHhC
Confidence 4566 888999999999999999999999999952 35 6999999999988653211 1234455554
Q ss_pred ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEe
Q 014342 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 389 (426)
Q Consensus 336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis 389 (426)
.+++.++.+++++.+|+++|.++++..+||+|++|+++|+|+
T Consensus 227 ------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 227 ------------TLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 247778999999999999999999999999999899999984
No 121
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.13 E-value=5.5e-10 Score=118.59 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=102.6
Q ss_pred HHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhh
Q 014342 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228 (426)
Q Consensus 149 ~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~ 228 (426)
.+.+...++.|+|.+ +..+++.+.++.+|.+.|.+++...+||+|+ +++++|++|..|+.+.+.... +
T Consensus 441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~---------~ 508 (574)
T PRK01862 441 RERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKR---------D 508 (574)
T ss_pred hhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhccc---------c
Confidence 466778889999876 4567889999999999999999999999996 479999999999876442110 0
Q ss_pred hcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHh
Q 014342 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308 (426)
Q Consensus 229 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~d 308 (426)
....++.+ .|.+++.++.+++++.+|++.|.+++.+++||+|++ +.+ +++|+||++|
T Consensus 509 ~~~~~v~d-------------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~-~~~---~liGvIt~~D 565 (574)
T PRK01862 509 TTDKTAAD-------------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESE-ASP---TLAGVVYKTS 565 (574)
T ss_pred cccchHHH-------------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCC-CCC---eEEEEEEHHH
Confidence 00001111 135677889999999999999999999999999642 224 6999999999
Q ss_pred HHHHHHh
Q 014342 309 ILKCICR 315 (426)
Q Consensus 309 il~~l~~ 315 (426)
+++.+.+
T Consensus 566 Il~~l~~ 572 (574)
T PRK01862 566 LLDAYRR 572 (574)
T ss_pred HHHHHHh
Confidence 9998754
No 122
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=1.1e-09 Score=91.27 Aligned_cols=118 Identities=20% Similarity=0.385 Sum_probs=87.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHH-HHhh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG-KLQL 244 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~-~~~~ 244 (426)
++++++++.++.+|++.|.++++..+||+|. ++++|++|..|+...+...... +. .......+... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPL--VR-----DRHQERRIRNLPVSD- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhc--cc-----chhhhhhhhccCHHH-
Confidence 4678899999999999999999999999995 7999999999987655421110 00 00000001000 011
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.+++..|.+.+.+.+||++ + + +++|++|..|+++
T Consensus 72 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvi~~~dl~~ 120 (121)
T cd04633 72 -----------IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD---D-G---KLVGIVTRTDILR 120 (121)
T ss_pred -----------HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE---C-C---EEEEEEEHHHhhc
Confidence 1356778999999999999999999999999995 2 5 7999999999976
No 123
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=1.5e-09 Score=88.93 Aligned_cols=108 Identities=21% Similarity=0.397 Sum_probs=86.2
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
.++++++.+.++.+|.+.|.+++...+||+|+ ++++|+++..|+...+.... ...++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-----------~~~~~~~~------- 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-----------GHAPVKDY------- 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-----------ccCcHHHH-------
Confidence 35788899999999999999999999999996 79999999999876442100 00111111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+++++.+++++.+++..|.+++.+.+||++ +| +++|++|..|+++
T Consensus 62 ------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~---~~~Gvvt~~di~~ 109 (110)
T cd04595 62 ------------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DG---RLVGIVTRTDLLR 109 (110)
T ss_pred ------------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CC---EEEEEEEhHHhhc
Confidence 245678899999999999999999999999994 35 7999999999875
No 124
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.13 E-value=1.1e-09 Score=89.75 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=86.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+.++++.+.++.+|.+.|.+++...+||.|+ ++++|+++..|+...+.... .. ...++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~--~~-------~~~~i~~~-------- 62 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDG--LP-------SSTPVGEI-------- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCC--CC-------CCCCHHHH--------
Confidence 4577899999999999999999999999985 68999999999876543100 00 00011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
|..++..+.+++++.++++.|.+++.+.+||++ ++ +++|++|..|+++|
T Consensus 63 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~G~it~~dl~~~ 111 (111)
T cd04589 63 -----------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE----GG---EVVGVLEQTDLLSF 111 (111)
T ss_pred -----------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEee----CC---EEEEEEEhHHhhcC
Confidence 345678899999999999999999999999995 25 79999999999864
No 125
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=9.8e-10 Score=90.07 Aligned_cols=109 Identities=22% Similarity=0.332 Sum_probs=86.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+.++++++.++.+|.+.|.+.+...+||+|+ +++++|+++..|+...+..... ...+..+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~-----------~~~v~~~-------- 61 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGP-----------DAPVRGV-------- 61 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCC-----------CCcHHHH--------
Confidence 4567889999999999999999999999985 4789999999998765542110 0011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.+|++.|.+++...+||+++ .+ +++|++|.+|+.+
T Consensus 62 -----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~ 110 (111)
T cd04639 62 -----------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SG---RLVGLVTLENVGE 110 (111)
T ss_pred -----------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CC---CEEEEEEHHHhhc
Confidence 2456788999999999999999999999999952 25 6999999999875
No 126
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=1.9e-09 Score=90.05 Aligned_cols=121 Identities=17% Similarity=0.370 Sum_probs=89.2
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.++.+|.+.|.++++..+||+|+ ++++|+++..|+...+....... .....+ ...+......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~- 72 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA-GETEKD-----LATLNRRAHQI- 72 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc-cchHHH-----HHHHHhHHHHh-
Confidence 4678899999999999999999999999995 79999999999887654322110 000000 01111111111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
|..+++.+.+++++.++++.|.+++...+||+++ ++ +++|++|..|++++
T Consensus 73 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~ 122 (122)
T cd04637 73 -----------MTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY 122 (122)
T ss_pred -----------hcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence 3466888999999999999999999999999952 35 69999999999863
No 127
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=7.2e-10 Score=94.61 Aligned_cols=127 Identities=24% Similarity=0.367 Sum_probs=88.4
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCC--CCC----ChhhhcccchhhhH
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--SNL----TEEELETHTISAWK 238 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~--~~~----~~~~l~~~~i~~~~ 238 (426)
..+.+++.+.++.+|++.|.+++...+||+|+ +++++|+++..|+...+...+... ... ..+...........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 46788999999999999999999999999995 479999999999876543211000 000 00000000000000
Q ss_pred HHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
..... .|..++.++.+++++.+++..|.+.+.+++||++ .| +++|++|..|+++
T Consensus 81 ~~v~~------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g---~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVAD------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GG---RLVGIVSRADLLR 134 (135)
T ss_pred CCHHH------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CC---EEEEEEEhHhhhc
Confidence 00011 1356788999999999999999999999999994 35 7999999999875
No 128
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.11 E-value=1.8e-09 Score=88.79 Aligned_cols=110 Identities=23% Similarity=0.426 Sum_probs=85.5
Q ss_pred EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcc
Q 014342 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 246 (426)
Q Consensus 167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 246 (426)
..++.++.++.+|++.|.++++..+||+|+ .++++|++|..|+...+... ..+....+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~---------~~~~~~~i~~---------- 62 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALES---------EELKDAKVRE---------- 62 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhh---------hhhcCCcHHH----------
Confidence 567789999999999999999999999996 47899999999987643211 0001111111
Q ss_pred ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 247 ~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.++++.|.+++.+.+||++ +.| +++|++|..++++
T Consensus 63 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~~g---~~~Gvvt~~dl~~ 112 (113)
T cd04615 63 ---------VMNSPVITIDANDSIAKARWLMSNNNISRLPVLD---DKG---KVGGIVTEDDILR 112 (113)
T ss_pred ---------hccCCceEECCCCcHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEEHHHhhc
Confidence 1345678899999999999999999999999995 235 7999999999864
No 129
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=1e-09 Score=90.30 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=86.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|.+.|.++++..+||+|+ .++++|+++..|++..+...... . .....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~-~------~~~~~v~~--------- 64 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYH-C------DGVATVRD--------- 64 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhc-c------CCCccHHH---------
Confidence 4577899999999999999999999999985 47899999999987654321000 0 00001111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.++++.|.+++.+.+||++ + | +++|++|..||++
T Consensus 65 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~ 113 (114)
T cd04629 65 ----------IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD---D-G---KLVGQISRRDVLR 113 (114)
T ss_pred ----------HhccCceEECCCCcHHHHHHHHHHhCCCccCEEE---C-C---EEEEEEEHHHHhc
Confidence 1245678899999999999999999999999995 2 5 7999999999975
No 130
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.11 E-value=1.6e-09 Score=92.83 Aligned_cols=124 Identities=15% Similarity=0.287 Sum_probs=87.3
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChh--hhcc-------cchhh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE--ELET-------HTISA 236 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~--~l~~-------~~i~~ 236 (426)
.+.++..+.++.+|++.|.+++...+||+|+ .++++|++|..|++..+...... ..... .+.. .....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKKSIKMKRKAGQKRYRYVKE 78 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchhhhhhhhhccccccccccc
Confidence 3567889999999999999999999999995 57999999999988755311100 00000 0000 00000
Q ss_pred hHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
....... .|..++..+.+++++.++++.|.+++.+++||++ + | +++|+||++++++
T Consensus 79 ~~~~v~~------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---~-~---~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAED------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD---N-D---NIVGVITKTDICR 134 (135)
T ss_pred ccccHHH------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe---C-C---EEEEEEEHHHHhh
Confidence 0000011 2456778899999999999999999999999995 2 5 7999999999875
No 131
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.11 E-value=1.5e-09 Score=89.14 Aligned_cols=112 Identities=25% Similarity=0.342 Sum_probs=86.9
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.++..+.++.+|.+.|.++++..+||+|++ ++++|+++..|+...+.... .....++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~---------~~~~~~v~~~-------- 63 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPS---------LYDLVVASDI-------- 63 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhccc---------ccccEEHHHh--------
Confidence 46778999999999999999999999999964 78999999999876442100 0000111111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.++++.|.+.+.+.+||++++ .+ +++|++|..|++.
T Consensus 64 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~---~~~Gvvt~~di~~ 113 (114)
T cd04613 64 -----------MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PG---KLLGILSRSDLLS 113 (114)
T ss_pred -----------ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CC---EEEEEEEhHHhhc
Confidence 35667889999999999999999999999999521 35 7999999999875
No 132
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.11 E-value=2e-09 Score=88.18 Aligned_cols=109 Identities=19% Similarity=0.365 Sum_probs=85.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++.+.++.+|.+.|.++++..+||.|+ ++++|+++..|+...+.. .. . . ...++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~--~~---~--~--~~~~i~~~-------- 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVA--EG---L--D--PDTPVSEV-------- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhc--cC---C--C--ccCCHHHH--------
Confidence 4678899999999999999999999999995 799999999998754321 00 0 0 00111211
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
+..+++++.+++++.++++.|.+.+.+++||++ + | +++|++|.+|+++
T Consensus 63 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Giit~~di~~ 110 (111)
T cd04800 63 -----------MTAPPITIPPDATVFEALLLMLERGIHHLPVVD---D-G---RLVGVISATDLLR 110 (111)
T ss_pred -----------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhc
Confidence 245678899999999999999999999999995 2 5 7999999999875
No 133
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=2e-09 Score=88.24 Aligned_cols=109 Identities=12% Similarity=0.247 Sum_probs=85.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++.+.++.+|++.|.+++...+||+|+ .++++|+++..|+....... . .....+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~--~--------~~~~~v~~~-------- 62 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFE--S--------FLEKKVFNI-------- 62 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhc--c--------cccCcHHHH--------
Confidence 4677899999999999999999999999986 47999999999987543210 0 000011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.+|++.|.+++.+++||++ + | +++|+||..|++.
T Consensus 63 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~di~~ 110 (111)
T cd04626 63 -----------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD---D-N---KLIGVVRTKDILD 110 (111)
T ss_pred -----------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEhHHhcc
Confidence 346778899999999999999999999999995 2 5 7999999999864
No 134
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.09 E-value=1.9e-09 Score=89.54 Aligned_cols=120 Identities=21% Similarity=0.357 Sum_probs=87.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++.+.++.+|++.|.++++..+||+|. ++++|+++..|+.......... ....+... .... .....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~---~~~~~~~~-~~~~--~~~~~-- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT---LDIWELYY-LLSK--IKVSD-- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc---ccchhhhh-hhcc--cCHHH--
Confidence 4678899999999999999999999999996 7999999999987654311100 00000000 0000 00011
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|.++++++.+++++.+++..|.+.+.+++||++ +.| +++|++|..||++
T Consensus 72 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~Gvvt~~di~~ 121 (122)
T cd04585 72 ----------IMTRDPITVSPDASVEEAAELMLERKISGLPVVD---DQG---RLVGIITESDLFR 121 (122)
T ss_pred ----------hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC---CCC---cEEEEEEHHHhhh
Confidence 2356788999999999999999999999999995 235 6999999999976
No 135
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.09 E-value=3.7e-09 Score=108.67 Aligned_cols=115 Identities=16% Similarity=0.323 Sum_probs=91.7
Q ss_pred cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCC--CcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342 158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235 (426)
Q Consensus 158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~--~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~ 235 (426)
.+.|.. ++++++++.++.+|+++|.+++++.+||+|++. ++++|+||.+|+.... .. ..++.
T Consensus 83 ~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~~----------~~~V~ 146 (450)
T TIGR01302 83 ENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----DK----------GKPVS 146 (450)
T ss_pred cCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----cC----------CCCHH
Confidence 444443 678999999999999999999999999999643 6999999999985311 00 01122
Q ss_pred hhHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342 236 AWKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~-~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l 313 (426)
.+ |. .+++++.+++++.++++.|.+++.+.+||+| +.| +++|+||..||++.+
T Consensus 147 dv-------------------m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD---e~G---~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 147 EV-------------------MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD---KNG---ELVGLITMKDIVKRR 200 (450)
T ss_pred Hh-------------------hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEhHHhhhcc
Confidence 21 34 4788999999999999999999999999995 345 699999999999875
No 136
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.09 E-value=2.9e-09 Score=87.06 Aligned_cols=108 Identities=15% Similarity=0.261 Sum_probs=85.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|.+.|.++++..+||+|+ ++++|+++..|++........ ...+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~-----------~~~v~~~-------- 60 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE-----------LAKVKDV-------- 60 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc-----------ccCHHHH--------
Confidence 4677899999999999999999999999985 699999999998765431100 0011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
+..++.++.+++++.++++.|.+.+.+.+||++ ++| +++|++|..|+++
T Consensus 61 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~i~~~dl~~ 109 (110)
T cd04588 61 -----------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD---DEG---RPVGIITRTDILR 109 (110)
T ss_pred -----------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEEhHHhhc
Confidence 245678899999999999999999999999995 235 6999999999874
No 137
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.08 E-value=9.6e-10 Score=113.12 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=93.0
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHh-----CCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccc
Q 014342 256 PCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330 (426)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~-----~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~ 330 (426)
.|++.++++.++.++.+|++.|.+ ++...++|+| +.+ +++|+++.+|++.. . .+.+
T Consensus 136 iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd---~~~---~l~GvV~l~dLl~a-----~--------~~~~ 196 (449)
T TIGR00400 136 IMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN---ESK---HLKGVLSIRDLILA-----K--------PEEI 196 (449)
T ss_pred hCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC---CCC---eEEEEEEHHHHhcC-----C--------CCCc
Confidence 578889999999999999999975 4567889885 234 69999999998742 0 0223
Q ss_pred cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 331 v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
++++| .++++++++++++.+|++.|.++++..+||||++|+++|+||..|+++.+.+.
T Consensus 197 v~~im------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 197 LSSIM------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred HHHHh------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 44443 24677899999999999999999999999999999999999999999877654
No 138
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.08 E-value=3.1e-09 Score=86.91 Aligned_cols=109 Identities=18% Similarity=0.303 Sum_probs=85.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++++.++.+|++.|.+++...+||.|+ ++++|+++..|+......... ....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~----------~~~~v~~--------- 60 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD----------LQTPVGE--------- 60 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC----------CCcCHHH---------
Confidence 4577899999999999999999999999985 799999999998765431100 0011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..+++++.+++++.++++.|.+.+.+.+||+++ +| +++|++|.+++++
T Consensus 61 ----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~di~~ 110 (111)
T cd04611 61 ----------VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DG---ELLGLLSQTDLLQ 110 (111)
T ss_pred ----------hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CC---cEEEEEEhHHhhc
Confidence 12456788999999999999999999999999952 35 6999999999875
No 139
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.08 E-value=1.4e-09 Score=88.28 Aligned_cols=104 Identities=12% Similarity=0.150 Sum_probs=83.5
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.+++++.+.++.+|++.|.+++...+||+|+ +++++|++|..|+..... . .+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~-----------~-----~~~~--------- 55 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG-----------G-----CCGD--------- 55 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc-----------c-----chhh---------
Confidence 4567889999999999999999999999985 479999999999864210 0 0111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|.+....+.+++++.++++.|.++++..+||+++ ++ +++|++|.+++++
T Consensus 56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~ 105 (106)
T cd04582 56 ----------HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIAD 105 (106)
T ss_pred ----------hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 12445677999999999999999999999999952 35 6999999999875
No 140
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=1.9e-09 Score=90.85 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=82.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHH--HHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL--RELGTNGSNLTEEELETHTISAWKVGKLQ 243 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l--~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (426)
+++++..+.++.+|++.|.+++...+||+|+ .++++|+++..|+.... ........ .....++..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~-----~~~~~~v~~i------ 69 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGI-----SRSELTVADV------ 69 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCC-----CchheEHHHh------
Confidence 4678899999999999999999999999995 47899999999987521 11111000 0000111111
Q ss_pred hccccccCCCCCCCCCCce--Ee----CCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 244 LNLKRQMDGNGRPCPRPLV--QA----GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~v--~v----~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+.. .+ .+++++.++++.|.+++.+.+||+++ +.| +++|+||.+||++
T Consensus 70 -------------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--~~~---~~~G~it~~di~~ 125 (126)
T cd04640 70 -------------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR--EHH---QIRGIISTSDIAR 125 (126)
T ss_pred -------------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--CCC---EEEEEEeHHHHhh
Confidence 222222 22 36889999999999999999999963 225 6999999999875
No 141
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.07 E-value=2.6e-09 Score=87.31 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=84.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (426)
.+..++++.++.++.+.|.+++...+||+|+. .++++|+++..|+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 46788999999999999999999999999963 4799999999997644321
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
+ |..++.++.+++++.++++.|.+++.+.+||++ +| +++|++|..|+++
T Consensus 56 ~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~---~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 Y------------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EG---RLVGIITRKDLLK 104 (105)
T ss_pred h------------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEhhhhhc
Confidence 1 245677899999999999999999999999993 35 7999999999875
No 142
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.06 E-value=2.9e-09 Score=87.92 Aligned_cols=110 Identities=16% Similarity=0.296 Sum_probs=82.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCC-CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~-i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
+.++++.+.++.+|++.|.+++ ...+||.|. ++++|+++..|++..+..-. . ....++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~----~-----~~~~~i~~~------- 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGK----D-----LSDLPIGEV------- 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCC----C-----ccccCHHHh-------
Confidence 4567889999999999999888 667777773 78999999999876543100 0 000111111
Q ss_pred ccccccCCCCCCCCCCceEeCCC--CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPY--DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~--~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+++++.++ +++.+|++.|.+++.+.+||+++ +| +++|++|++|+++
T Consensus 64 ------------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Gvit~~dl~~ 114 (115)
T cd04620 64 ------------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QG---QLIGLVTAESIRQ 114 (115)
T ss_pred ------------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CC---CEEEEEEhHHhhc
Confidence 34567778877 78999999999999999999952 35 6999999999875
No 143
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=2.1e-09 Score=89.65 Aligned_cols=120 Identities=15% Similarity=0.292 Sum_probs=86.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+++++.++.++.+|++.|.+++...+||+|. .++++|+++..|++....... .. +...... .........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~-- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRT-SV-----EDQQRTQ-TKASPTVEK-- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccc-cc-----cchhhhh-hhccCcHHH--
Confidence 4678899999999999999999999999985 579999999999875321000 00 0000000 000000111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.+..+++++.+++++.+++..|.+++.+.+||+++ .| +++|++|..|+++
T Consensus 72 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvit~~dl~~ 121 (122)
T cd04635 72 ----------IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KD---QLVGIVDRHDVLK 121 (122)
T ss_pred ----------HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---cEEEEEEhHHhhc
Confidence 13466788999999999999999999999999952 35 7999999999875
No 144
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.06 E-value=3.7e-09 Score=86.41 Aligned_cols=109 Identities=22% Similarity=0.432 Sum_probs=85.9
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|++.|.+++++.+||+|. ++++|+++..|+........ . .. ..+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-----~--~~---~~~~-------~-- 60 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR-----E--AT---VLVG-------D-- 60 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc-----c--cc---cCHH-------H--
Confidence 4678899999999999999999999999995 79999999999875432100 0 00 0011 1
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.++++.|.+++.+.+||+++ ++ +++|++|..||++
T Consensus 61 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~ 110 (111)
T cd04612 61 ----------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SG---RLVGIVSRSDLLR 110 (111)
T ss_pred ----------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CC---CEEEEEEHHHhhh
Confidence 13567889999999999999999999999999952 35 6999999999875
No 145
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.06 E-value=3.2e-09 Score=86.76 Aligned_cols=105 Identities=22% Similarity=0.298 Sum_probs=84.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++++.++.+|++.|.+++...+||+|+ .++++|+++..|+.... . ..++..+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~-----------~~~v~~~-------- 58 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD----P-----------DTTIEKV-------- 58 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc----c-----------cccHHHH--------
Confidence 4678899999999999999999999999985 57999999999975310 0 0011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.++++.|.+++.+.+||++ ++| +++|++|..|+++
T Consensus 59 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~di~~ 107 (108)
T cd04596 59 -----------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVD---DNK---KLLGIISRQDVLK 107 (108)
T ss_pred -----------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc---CCC---CEEEEEEHHHhhc
Confidence 245678899999999999999999999999995 245 6999999999875
No 146
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.05 E-value=3.3e-09 Score=90.91 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=77.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhh---cccchhhhHHHHH
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL---ETHTISAWKVGKL 242 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l---~~~~i~~~~~~~~ 242 (426)
.++++.++.++.+|++.|.++++.++||+|+ .++++|+||..|++..+.......... .++. ....+..+....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~- 78 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQP-EDETKQTNTCLVSSVCTKG- 78 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhcccccccc-chhhcccccccHHHHhhhh-
Confidence 4678999999999999999999999999996 479999999999887664211100000 0000 000011111000
Q ss_pred hhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEec
Q 014342 243 QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290 (426)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~ 290 (426)
+. ...|..+++++.+++++.+|++.|.+++++++||+++
T Consensus 79 -~~--------~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 79 -IS--------YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -hh--------hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 00 0013567889999999999999999999999999974
No 147
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.04 E-value=7.5e-09 Score=84.89 Aligned_cols=110 Identities=18% Similarity=0.334 Sum_probs=84.9
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+++++.++.++.+|++.|.+++...+||+|+ ++++|+++..|+...+.... +.. ...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~~-------~~~~~~~--------- 62 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRN-LKP-------REVPVGE--------- 62 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhcc-CCc-------ccCCHHH---------
Confidence 4677899999999999999999999999995 38999999999886543110 000 0001111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++..+.+++++.++++.|.+++.+.+||+++ + +++|++|..|+++
T Consensus 63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~ 111 (112)
T cd04802 63 ----------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM 111 (112)
T ss_pred ----------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence 13456788999999999999999999999999952 3 5999999999874
No 148
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.04 E-value=3.9e-09 Score=109.24 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=96.1
Q ss_pred ccHHHHHHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHH
Q 014342 136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILI 213 (426)
Q Consensus 136 ~~~~~l~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~ 213 (426)
.+.++.......+.+++..... ...+++++.|+.+|+++|.++++..+||+|+. +++++|+||..|+...
T Consensus 84 ~sie~qa~lV~kVk~~~~g~i~--------~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~ 155 (502)
T PRK07107 84 QSIESEAAMVRRVKNYKAGFVV--------SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS 155 (502)
T ss_pred CCHHHHHHHHHHHHHHhcCCcC--------CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc
Confidence 3455544444555555532211 11478999999999999999999999999952 4799999999997311
Q ss_pred HHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecC
Q 014342 214 LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHST 291 (426)
Q Consensus 214 l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d 291 (426)
.. ....+++++ |+ .+++++.+++++.+|+++|.++++..+||+|
T Consensus 156 ----~~---------~~~~~V~dI-------------------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-- 201 (502)
T PRK07107 156 ----RM---------SLDTKVKDF-------------------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-- 201 (502)
T ss_pred ----cc---------CCCCCHHHH-------------------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc--
Confidence 00 001112222 34 3788999999999999999999999999995
Q ss_pred CCCCCcceEEEEecHHhHHHHH
Q 014342 292 GPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 292 ~~~g~~~~lvGiit~~dil~~l 313 (426)
+++ +++|+||.+||++..
T Consensus 202 -~~g---~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 202 -KNG---NLVYLVFRKDYDSHK 219 (502)
T ss_pred -CCC---eEEEEEEhHHHHhcc
Confidence 235 699999999999853
No 149
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.04 E-value=6.6e-09 Score=85.29 Aligned_cols=111 Identities=19% Similarity=0.321 Sum_probs=85.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+++++..+.++.+|++.|.+++...+||.|. ++++|+++..|++..+.. .. . . ....++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~---~~--~--~-~~~~~v~~i-------- 63 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVA---QG--L--D-PESTLVERV-------- 63 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHh---cC--C--C-cCcCCHHHh--------
Confidence 4677899999999999999999999999984 799999999998743321 10 0 0 000111111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.++++.|.+++.+++||+++ ++ +++|++|..|++.
T Consensus 64 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~---~~~Gvvs~~dl~~ 112 (113)
T cd04587 64 -----------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SG---QVVGLLDVTKLTH 112 (113)
T ss_pred -----------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CC---CEEEEEEHHHhcc
Confidence 3456778999999999999999999999999952 35 6999999999864
No 150
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.04 E-value=5.9e-09 Score=84.90 Aligned_cols=106 Identities=13% Similarity=0.275 Sum_probs=84.5
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.+++++++.++.+|++.|.++++..+||+|+ .++++|+++..|+..... . . ..+..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~---~-~----------~~v~~~-------- 59 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYK---E-A----------KSLEDI-------- 59 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhh---c-C----------CcHhHh--------
Confidence 4567899999999999999999999999986 479999999999865321 0 0 011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|...+.++.+++++.+++..|.+.+.+++||++ ++| +++|++|..++++
T Consensus 60 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~---~~g---~~~Gvit~~~l~~ 108 (109)
T cd04583 60 -----------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD---EDG---KLVGLITRSSLVD 108 (109)
T ss_pred -----------hcCCceEECCCCcHHHHHHHHHHcCCceeeEEC---CCC---eEEEEEehHHhhc
Confidence 245678899999999999999999999999995 235 6999999999874
No 151
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.03 E-value=6.4e-09 Score=85.85 Aligned_cols=110 Identities=25% Similarity=0.485 Sum_probs=88.3
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
..++++.++.++.+|+.+|.++++.++||.+. .+++|++|..|++..+........ . ...
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~----------~-------v~~- 66 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL----------P-------VKE- 66 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc----------c-------HHH-
Confidence 57889999999999999999999999999985 379999999999877653221100 0 111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHh-CCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-NKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~-~~v~~lpVvd~d~~~g~~~~lvGiit~~dil 310 (426)
.|+.+++++.+++++.++.+.|.+ ++++++||+++ +.+ +++|++|..|++
T Consensus 67 -----------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~ 117 (117)
T COG0517 67 -----------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL 117 (117)
T ss_pred -----------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence 246688999999999999999999 79999999963 223 599999999873
No 152
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.03 E-value=3.8e-09 Score=86.79 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=85.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.++.++.++.+|.+.|.+.+...+||+|. .++++|+++..|+...+..... ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~---------~~~~~v~~~-------- 64 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD---------ILTLPVADV-------- 64 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc---------cccCCHHHh--------
Confidence 3556788999999999999999999999986 4799999999998776542110 000111211
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+..++.+++++.++++.|.+++.+.+||+++ ++ +++|++|..||++
T Consensus 65 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~iG~it~~di~~ 113 (114)
T cd04604 65 -----------MTRNPKTIDPDALAAEALELMEENKITALPVVDD---NG---RPVGVLHIHDLLR 113 (114)
T ss_pred -----------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEEEHHHhhc
Confidence 2455678999999999999999999999999952 35 6999999999875
No 153
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=6.9e-09 Score=85.10 Aligned_cols=110 Identities=20% Similarity=0.323 Sum_probs=86.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++.+.++.+|.+.|.+++...+||.|++ ++++|++|..|++..+..... . ...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~----~------~~~v~~--------- 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID----L------DTPVSE--------- 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC----C------ccCHHH---------
Confidence 45678999999999999999999999999864 799999999998765432110 0 001111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.++++.|.+++...+||+++ +| +++|++|..|+++
T Consensus 62 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gilt~~dl~~ 111 (112)
T cd04624 62 ----------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GG---ELVGVISIRDLVR 111 (112)
T ss_pred ----------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CC---cEEEEEEHHHhcc
Confidence 13456788999999999999999999999999952 35 6999999999875
No 154
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.03 E-value=2.7e-09 Score=91.45 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=78.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC-ccccc---ccccccc
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ 335 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-~~~~~---~~v~~l~ 335 (426)
.+.++.+++++.+|++.|.+++++++||+| +.| +++|++|..|+++++.......... ...++ ..+.+++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD---~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD---SDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 357899999999999999999999999995 235 6999999999999876432110000 00000 0111122
Q ss_pred ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC
Q 014342 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 381 (426)
Q Consensus 336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~ 381 (426)
.... +.+.|.++++++++++++.+|+++|.+++++++||+|++
T Consensus 76 ~~~~---~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 TKGI---SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhhh---hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 1000 001123578899999999999999999999999999864
No 155
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=7.5e-09 Score=84.90 Aligned_cols=109 Identities=21% Similarity=0.350 Sum_probs=82.9
Q ss_pred EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcc
Q 014342 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 246 (426)
Q Consensus 167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 246 (426)
+.++.++.++.+|.+.|.+++...+||.+ + ++++|++|..|+...+..... .....++..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~--------~~~~~~v~~~--------- 63 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGA--------GVLDTTVRAI--------- 63 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCC--------chhcCCHHHH---------
Confidence 56788999999999999988887777665 3 799999999998765532100 0000111211
Q ss_pred ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 247 ~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.+|++.|.+++..++||++ ++ +++|++|.+|+++
T Consensus 64 ----------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~---~~~Gvvt~~dl~~ 111 (112)
T cd04625 64 ----------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GG---TLLGVISFHDVAK 111 (112)
T ss_pred ----------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CC---EEEEEEEHHHhhc
Confidence 245567899999999999999999999999995 25 7999999999875
No 156
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.02 E-value=2.1e-08 Score=103.13 Aligned_cols=122 Identities=12% Similarity=0.128 Sum_probs=96.5
Q ss_pred HHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhh
Q 014342 150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229 (426)
Q Consensus 150 ~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l 229 (426)
+.+...+.+++|-+ .++++.++.++.+|+++|.++++..+||+|. ++++|+||.+|+... . .
T Consensus 83 e~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-----~---~------ 144 (475)
T TIGR01303 83 QTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-----D---R------ 144 (475)
T ss_pred HHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-----C---C------
Confidence 44556667777755 5688999999999999999999999999984 589999999996210 0 0
Q ss_pred cccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhH
Q 014342 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309 (426)
Q Consensus 230 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~di 309 (426)
. ..+.+ .|+.+++++.+++++.+|+++|.+++++.+||+| +++ +++|+||++||
T Consensus 145 ~-~~V~d-------------------IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD---~~g---~LvGIIT~~DL 198 (475)
T TIGR01303 145 F-TQVRD-------------------IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD---ADG---TLAGILTRTGA 198 (475)
T ss_pred C-CCHHH-------------------HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHH
Confidence 0 01121 1467889999999999999999999999999995 235 79999999999
Q ss_pred HHHHHh
Q 014342 310 LKCICR 315 (426)
Q Consensus 310 l~~l~~ 315 (426)
++....
T Consensus 199 l~~~~~ 204 (475)
T TIGR01303 199 LRATIY 204 (475)
T ss_pred HHHHhC
Confidence 987553
No 157
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.02 E-value=7.1e-09 Score=86.18 Aligned_cols=119 Identities=18% Similarity=0.367 Sum_probs=86.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++.+.++.+|++.|.+++...+||+|. +++++|+++..|+......................++.. +
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~-------~- 72 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE-------I- 72 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH-------H-
Confidence 4678889999999999999999999999996 479999999999876543221100000000000011111 1
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..+++++.+++++.++++.|.+.+.+.+||++ . + +++|++|..||++
T Consensus 73 -----------~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~~Gvv~~~di~~ 120 (121)
T cd04584 73 -----------MTKDVITVHPLDTVEEAALLMREHRIGCLPVVE---D-G---RLVGIITETDLLR 120 (121)
T ss_pred -----------hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHhhc
Confidence 245678899999999999999999999999995 2 5 7999999999875
No 158
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.01 E-value=1.1e-08 Score=83.97 Aligned_cols=111 Identities=19% Similarity=0.386 Sum_probs=84.3
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|++.|.+++...+||+|+ ++++|+++..|++..+. ..... .....+..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~--~~~~~------~~~~~~~~~-------- 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAV--AEGRD------PDTTTVGDV-------- 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHh--hccCC------cccCCHHHh--------
Confidence 4678899999999999999999999999985 79999999999752211 01000 000011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|...+.++.+++++.++++.|.+++.+++||+++ .+ +++|++|..|+++
T Consensus 64 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~ 112 (113)
T cd04622 64 -----------MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLAR 112 (113)
T ss_pred -----------ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence 2456678999999999999999999999999952 35 6999999999875
No 159
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.01 E-value=2.6e-08 Score=103.32 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=89.1
Q ss_pred CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHH
Q 014342 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKL 242 (426)
Q Consensus 165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~ 242 (426)
.+++++.++.|+.+|.++|.++++..+||+|+. .++++|+||..|+.... . ...++.++
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----~----------~~~~V~eI----- 168 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----D----------RETKLSEV----- 168 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc----c----------cCCcHHHH-----
Confidence 367889999999999999999999999999863 37999999999974211 0 00112221
Q ss_pred hhccccccCCCCCCCCCC--ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342 243 QLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (426)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~ 314 (426)
|++. ++++.+++++.+|++.|.++++..+||+| +.+ +++|+||++||++.+.
T Consensus 169 --------------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD---~~g---~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 169 --------------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN---EDG---ELVDLVTRTDVKRVKG 222 (505)
T ss_pred --------------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHhh
Confidence 2433 78999999999999999999999999995 235 6999999999999865
No 160
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=9.3e-09 Score=83.22 Aligned_cols=102 Identities=18% Similarity=0.298 Sum_probs=82.4
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|++.|.+++...+||+|+ ++++|+++..|+.... . . ..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~----~-------~----~~~~~~-------- 56 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH----P-------N----RLVADA-------- 56 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc----c-------c----CCHHHH--------
Confidence 4567899999999999999999999999983 7999999999976421 0 0 011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 310 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil 310 (426)
|..++.++.+++++.++++.|.+++...+||++ + + +++|++|..+++
T Consensus 57 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~~l~ 103 (105)
T cd04599 57 -----------MTREVVTISPEASLLEAKRLMEEKKIERLPVLR---E-R---KLVGIITKGTIA 103 (105)
T ss_pred -----------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE---C-C---EEEEEEEHHHhc
Confidence 245678899999999999999999999999995 2 5 799999999986
No 161
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.00 E-value=4e-09 Score=108.96 Aligned_cols=113 Identities=14% Similarity=0.249 Sum_probs=89.0
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (426)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (426)
|.+++.++.+++++.++++.|.+++++++||+|+ ++ +++|+||..|+++.+..... ....++.+++
T Consensus 341 m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~im- 406 (454)
T TIGR01137 341 HLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDDAVSKVM- 406 (454)
T ss_pred CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCCCHHHhc-
Confidence 5678899999999999999999999999999952 35 69999999999986653211 1123444444
Q ss_pred cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (426)
Q Consensus 337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~ 397 (426)
.+++.++.+++++.+++++|.+++ .|||+++|+++|+||++||++.+
T Consensus 407 -----------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 -----------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred -----------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 246778999999999999998764 35565679999999999999864
No 162
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.00 E-value=9e-09 Score=83.84 Aligned_cols=109 Identities=22% Similarity=0.355 Sum_probs=82.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
.+++++.+.++.+|.+.|.++++..+||+|. ++++|++|..|+...+...... . ...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--------~-~~~~~~--------- 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK--------F-SLPVRE--------- 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc--------c-CcCHHH---------
Confidence 4678899999999999999999999999995 7899999999988755321100 0 001111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
.+..+++++.+++++.++..+|.+ . +.+||++ +++ +++|++|.+||++|
T Consensus 62 ----------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~---~~~---~~~Gvvt~~di~~~ 110 (110)
T cd04609 62 ----------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVD---EGG---KFVGIITRADLLKY 110 (110)
T ss_pred ----------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEe---cCC---eEEEEEeHHHhhcC
Confidence 124567889999999999998887 3 3478885 235 79999999999864
No 163
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.99 E-value=3.3e-09 Score=101.30 Aligned_cols=110 Identities=15% Similarity=0.274 Sum_probs=92.8
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (426)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (426)
....++.+++++.+..++-.+.|.+|+||+|. .. +++|++|.+|++.. .-+.++..+|
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------------~~~t~ieKVM--- 255 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------------KPSTTIEKVM--- 255 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------------CCCccHHHHh---
Confidence 45667889999999999999999999999962 33 69999999998752 1134444444
Q ss_pred cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
.++++++.+.+++..+.++|.=.++.-+||+|++.+++|+|||+|+++.+..
T Consensus 256 ---------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 256 ---------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred ---------ccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999999986653
No 164
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.97 E-value=1.1e-08 Score=84.55 Aligned_cols=107 Identities=20% Similarity=0.312 Sum_probs=81.2
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (426)
.++++..+.++.+|.+.|.++++..+||+|+. .++++|+++..|+.... .. ...++.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----~~----------~~~v~~~------ 62 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----DS----------ETPLSEV------ 62 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh----cc----------CCCHHHh------
Confidence 45678899999999999999999999999952 47999999999975211 00 0011111
Q ss_pred hccccccCCCCCCCCCCceEeC--CCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 244 LNLKRQMDGNGRPCPRPLVQAG--PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~v~v~--~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|.....++. +++++.++++.|.+++.+.+||++ +++ +++|+||.+||++
T Consensus 63 -------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~---~~~---~~~Gvit~~di~~ 113 (114)
T cd04602 63 -------------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVN---DDG---ELVALVTRSDLKK 113 (114)
T ss_pred -------------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC---CCC---eEEEEEEHHHhhc
Confidence 233444554 499999999999999999999995 235 7999999999875
No 165
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.97 E-value=5.5e-08 Score=100.84 Aligned_cols=109 Identities=21% Similarity=0.310 Sum_probs=87.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (426)
.+++++++.++.+|.++|.++++..+||+|++ +++++|+||..|+.. . .. ...++.++
T Consensus 105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~-~----~~---------~~~~V~di------ 164 (495)
T PTZ00314 105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF-V----KD---------KSTPVSEV------ 164 (495)
T ss_pred CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh-c----cc---------CCCCHHHh------
Confidence 56789999999999999999999999999864 379999999999741 1 00 01112221
Q ss_pred hccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342 244 LNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 244 ~~~~~~~~g~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l 313 (426)
|++ +++++.+++++.+|+++|.++++..+||+|+ ++ +++|+||.+||++..
T Consensus 165 -------------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g---~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 165 -------------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NG---ELVALVSRSDLKKNR 217 (495)
T ss_pred -------------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEehHhhhcc
Confidence 344 7889999999999999999999999999952 35 699999999999864
No 166
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.97 E-value=7.9e-09 Score=83.96 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=81.2
Q ss_pred EEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccc
Q 014342 168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247 (426)
Q Consensus 168 i~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 247 (426)
+++..+.++.+|.+.|.+++...+||+|. ++++|+++..|+.... . . ++...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----~-------~-----~~~~~---------- 55 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----Y-------G-----DVVDY---------- 55 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----c-------c-----chhhh----------
Confidence 67789999999999999999999999994 7999999999975311 0 0 01111
Q ss_pred cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 248 ~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|.....++.++.++.+++..|.+++.+.+||++ +| +++|++|..|++.
T Consensus 56 ---------~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~---~~iGvit~~dl~~ 103 (104)
T cd04594 56 ---------IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DG---KFKGIVTLDSILD 103 (104)
T ss_pred ---------hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CC---EEEEEEEHHHhhc
Confidence 234567899999999999999999999999994 25 7999999999864
No 167
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.97 E-value=1.2e-09 Score=78.86 Aligned_cols=51 Identities=31% Similarity=0.508 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342 348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (426)
Q Consensus 348 ~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~ 398 (426)
.++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++++.
T Consensus 6 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 6 TPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp BSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 468899999999999999999999999999999999999999999998764
No 168
>PRK11573 hypothetical protein; Provisional
Probab=98.97 E-value=2.2e-08 Score=101.75 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=106.2
Q ss_pred hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (426)
Q Consensus 152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~ 231 (426)
|++.++.|+|..-.+++.++.+.++.++++++.+++.+.+||++.+.++++|++..+|++..+.. . ...
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~------- 252 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF------- 252 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC-------
Confidence 56889999999999999999999999999999999999999998776899999999998854321 0 000
Q ss_pred cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
....+. . ..+++..+.++.++.++++.|.+++.|-..|+| +-| ...|+||..||+.
T Consensus 253 -~~~~l~----~-------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilE 308 (413)
T PRK11573 253 -TKENML----R-------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILE 308 (413)
T ss_pred -CHHHHH----h-------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHH
Confidence 011111 1 135678899999999999999999999999996 334 4999999999999
Q ss_pred HHHhhc
Q 014342 312 CICRHF 317 (426)
Q Consensus 312 ~l~~~~ 317 (426)
.+....
T Consensus 309 eivGei 314 (413)
T PRK11573 309 EIVGDF 314 (413)
T ss_pred HHhCCC
Confidence 988554
No 169
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.97 E-value=1.2e-08 Score=82.98 Aligned_cols=103 Identities=22% Similarity=0.400 Sum_probs=82.7
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
+.++.++.++.+++..|.+.+...+||+++ ++ +++|+++..++++.. . ..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~~~~~~----- 58 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQLALLM----- 58 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cchHHHHh-----
Confidence 567889999999999999989999999952 25 699999999987521 0 11122222
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
..++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 59 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 59 -------TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -------cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 136678999999999999999999999999985 79999999999874
No 170
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.96 E-value=6.9e-09 Score=84.92 Aligned_cols=102 Identities=19% Similarity=0.372 Sum_probs=79.5
Q ss_pred EcCCccHHHHHHHHHHCC-----CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 170 l~~~~sv~~A~~~l~~~~-----i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
++++.|+.+|++.|.+++ +..+||+|+ .++++|++|..|++.. . . ..++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~-----~--~--------~~~v~~~------- 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA-----D--P--------DTPVSDI------- 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC-----C--C--------cchHHHH-------
Confidence 567889999999999877 578999985 4789999999887531 0 0 0011111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
+..++..+.+++++.++++.|.+++.+.+||+++ ++ +++|++|..|+++.
T Consensus 59 ------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~ 108 (109)
T cd04606 59 ------------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDV 108 (109)
T ss_pred ------------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhh
Confidence 2456788999999999999999999999999952 35 69999999999874
No 171
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.96 E-value=1.8e-08 Score=81.80 Aligned_cols=104 Identities=20% Similarity=0.392 Sum_probs=83.1
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+++++..+.++.+|++.|.+++...+||.|. ++++|+++..|++.. . . ...+..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~-----~--~--------~~~~~~~-------- 57 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK-----D--P--------DETVEEI-------- 57 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc-----C--c--------cccHHHh--------
Confidence 5678899999999999999999889999984 799999999997531 0 0 0011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|...+.++.+++++.++++.|.+++.+++||++ ++| +++|+++..++++
T Consensus 58 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~g---~~~Gvi~~~di~~ 106 (107)
T cd04610 58 -----------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVD---ENN---NLVGIITNTDVIR 106 (107)
T ss_pred -----------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC---CCC---eEEEEEEHHHhhc
Confidence 245567899999999999999999999999995 235 7999999999875
No 172
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.96 E-value=1.6e-08 Score=87.44 Aligned_cols=136 Identities=19% Similarity=0.345 Sum_probs=89.0
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCC--hhhhccc---chhhhHHH
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT--EEELETH---TISAWKVG 240 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~--~~~l~~~---~i~~~~~~ 240 (426)
++++++.+.++.+|++.|.++++.++||+|+ ++++|++|..|+...+........... ....... .+..|.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 4678899999999999999999999999995 799999999998876643221000000 0000000 00111111
Q ss_pred HHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.......... -....|..++.++.+++++.+++..|.+++.+++||++ . + +++|++|..|+++
T Consensus 80 ~~~~~~~~~~-~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---~-~---~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKM-KVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE---D-G---RLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcC-CHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHhhc
Confidence 1000000000 00012456788999999999999999999999999995 2 5 7999999999874
No 173
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.95 E-value=2.4e-08 Score=80.83 Aligned_cols=111 Identities=29% Similarity=0.511 Sum_probs=86.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++.+++.+.++.+|.+.|.+++...+||+|++ ++++|+++..|++..+...... .. . .+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~--~~---~----~~~-------~-- 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD--PL---V----TVG-------D-- 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC--cc---c----cHH-------H--
Confidence 46778999999999999999999999999964 7999999999987655422110 00 0 001 1
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.+..++..+.+++++.+++..|.+.+.+.+||+++ ++ +++|+++..|+++
T Consensus 63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~ 112 (113)
T cd02205 63 ----------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EG---RLVGIVTRSDILR 112 (113)
T ss_pred ----------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHhhc
Confidence 12456778899999999999999999999999953 35 6999999999875
No 174
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.89 E-value=1.7e-08 Score=82.27 Aligned_cols=106 Identities=21% Similarity=0.343 Sum_probs=80.8
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
+.++++.+.++.+|.+.|.+++...+||+|. +++++|+++..|+.... . . ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~--~--------~~~v~~~-------- 59 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFET----D--L--------DKPVSEV-------- 59 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeecc----c--C--------CCCHHHh--------
Confidence 4678899999999999999999999999985 47999999998864210 0 0 0011111
Q ss_pred cccccCCCCCCCCCCceEeCC-CCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGP-YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~-~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|...+..+.+ ++++.++++.|.+++.+.+||+++ ++ +++|++|.+|+++
T Consensus 60 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~ 109 (110)
T cd04601 60 -----------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEK 109 (110)
T ss_pred -----------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhc
Confidence 2233445556 999999999999999999999952 35 6999999999875
No 175
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.89 E-value=3.8e-08 Score=81.59 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=82.6
Q ss_pred cEEEEcCCccHHHHHHHHHHCC-CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342 166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~-i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 244 (426)
++.++.++.++.+|++.|.+++ +..+||+|+ ++++|+++..|+...+..... .......++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~v~~-------- 65 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RALYGKKPVSE-------- 65 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHHHcCCcHHH--------
Confidence 3456788999999999999887 899999996 799999999998765432110 00001111111
Q ss_pred ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCC---eeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA---TVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~---~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
.|..++.++.+++++.+++..|.+++.. ..||+++ .| +++|+||..|+++
T Consensus 66 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvvs~~di~~ 118 (119)
T cd04598 66 -----------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EG---RYLGIGTVKDLLR 118 (119)
T ss_pred -----------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CC---eEEEEEEHHHHhc
Confidence 1356788899999999999999988764 4467752 35 7999999999874
No 176
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.87 E-value=1.9e-08 Score=103.94 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=98.4
Q ss_pred HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 014342 144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223 (426)
Q Consensus 144 ~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~ 223 (426)
+.....++|...++.++|.+ +++++.++.++.+|++.|.++++..+||+|+ .++++|+||..|+...+..... .
T Consensus 324 ~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~ 397 (454)
T TIGR01137 324 EVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA---N 397 (454)
T ss_pred ccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC---C
Confidence 33356677999999999965 6888999999999999999999999999985 4789999999998765432100 0
Q ss_pred CChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEE
Q 014342 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL 303 (426)
Q Consensus 224 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGi 303 (426)
...++.. .|..++.++.+++++.+++..|.+++ .||+++ ++ +++|+
T Consensus 398 ------~~~~v~~-------------------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~---~g---~liGv 443 (454)
T TIGR01137 398 ------PDDAVSK-------------------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE---EG---KPIGV 443 (454)
T ss_pred ------cCCCHHH-------------------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE---CC---EEEEE
Confidence 0001111 13566788999999999999998753 355532 35 79999
Q ss_pred ecHHhHHHHH
Q 014342 304 ASLSDILKCI 313 (426)
Q Consensus 304 it~~dil~~l 313 (426)
||.+||++++
T Consensus 444 vt~~dll~~l 453 (454)
T TIGR01137 444 VTKIDLLSFL 453 (454)
T ss_pred EEHHHHHHhh
Confidence 9999999875
No 177
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=1.1e-07 Score=77.12 Aligned_cols=104 Identities=21% Similarity=0.394 Sum_probs=82.7
Q ss_pred cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN 245 (426)
Q Consensus 166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 245 (426)
++++++.+.++.+|+..|.+++...+||+|++ ++++|+++..|+... .. + ..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~----~~-------~----~~~~~~-------- 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRN----PE-------E----EQLALL-------- 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhc----cc-------c----chHHHH--------
Confidence 56788899999999999999999999999864 789999999997531 00 0 011111
Q ss_pred cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (426)
Q Consensus 246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~ 311 (426)
|..++.++.+++++.+++..|.+++.+.+||++ .+ +++|++|..++++
T Consensus 58 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~---~~~G~it~~d~~~ 105 (106)
T cd04638 58 -----------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD----DG---KLVGIVTVADIVR 105 (106)
T ss_pred -----------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHhhc
Confidence 245567889999999999999999999999995 24 6999999999864
No 178
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.80 E-value=4.5e-08 Score=93.90 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=88.7
Q ss_pred ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (426)
Q Consensus 155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i 234 (426)
.++.|+|... .+.++.++.++.+|++.|.+.++..+||+|+ +++++|++|..|+...+.. . .. ...++
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~--~--~~------~~~~v 222 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLG--G--GS------LKSEV 222 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhc--C--Cc------ccCcH
Confidence 5788888664 2778899999999999999999999999995 4799999999998764321 0 00 00011
Q ss_pred hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEec
Q 014342 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit 305 (426)
++ .|.++++++.+++++.+|++.|.+++++++||++ ++| +++|+|+
T Consensus 223 ~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~GvI~ 268 (268)
T TIGR00393 223 RD-------------------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD---DHN---KVLGVLH 268 (268)
T ss_pred HH-------------------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---eEEEEEC
Confidence 11 1356788999999999999999999999999995 335 6999985
No 179
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.79 E-value=4.8e-08 Score=93.48 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=102.4
Q ss_pred ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (426)
Q Consensus 155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i 234 (426)
.++.|+|......-.+..++++.+-.++-.+.|....||+|. ..+++|++|.+|+++.- + .. ++
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~--------~--~t-----~i 251 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK--------P--ST-----TI 251 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC--------C--Cc-----cH
Confidence 468889988888889999999999999999999999999996 46999999999976321 0 01 11
Q ss_pred hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342 235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (426)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~ 314 (426)
.. .|++.++++.+.+++.-+...|.-.++.-+||+++ +. +++|+||++|+++.+.
T Consensus 252 eK-------------------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~---~llGiitR~dvlk~lq 306 (432)
T COG4109 252 EK-------------------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NN---TLLGIITRQDVLKSLQ 306 (432)
T ss_pred HH-------------------HhccCCeeecccchHHHHHHHHHhccceeeeEEcC---Cc---eEEEEEEHHHHHHHHH
Confidence 11 36888899999999999999999999999999963 33 6999999999999987
Q ss_pred hhccc
Q 014342 315 RHFKH 319 (426)
Q Consensus 315 ~~~~~ 319 (426)
...+.
T Consensus 307 ~~q~q 311 (432)
T COG4109 307 MIQRQ 311 (432)
T ss_pred HhccC
Confidence 65443
No 180
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.76 E-value=3.4e-08 Score=76.71 Aligned_cols=72 Identities=32% Similarity=0.496 Sum_probs=59.8
Q ss_pred eEEEEEecC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcCeeecCCCCCeeeCCCC
Q 014342 21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGNYG 94 (426)
Q Consensus 21 ~~v~f~~~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~-g~y~ykFiVDg~w~~d~~~p~~~d~~G 94 (426)
..++|++.. .+++|.|++.|++|....+|.+.+ +|.|++.+++.+ |.|.|+|.|+|.|.+++.++...+...
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~ 77 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGS 77 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence 468888766 479999999999976668998765 699999999998 999999999999999998865554433
No 181
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.69 E-value=9.5e-08 Score=97.04 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=98.2
Q ss_pred cCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc
Q 014342 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL 324 (426)
Q Consensus 250 ~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~-----~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~ 324 (426)
.+-.|..|+..++++.++.|+.+++..+.+ .....+.|+| ..+ +++|+++.++++..
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD---~~~---~L~Gvvsl~~Ll~a------------ 192 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD---EKG---KLLGVVSLRDLLTA------------ 192 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEEC---Ccc---ceEEEeeHHHHhcC------------
Confidence 344556789999999999999999999884 3568899995 234 69999999998742
Q ss_pred cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 325 ~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
..+..++++|. +.++++.+++...++.+++.++++-++||||++++++|+||..|++..+.+.
T Consensus 193 -~~~~~i~~im~------------~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 193 -EPDELLKDLME------------DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred -CcHhHHHHHhc------------ccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 01334444542 4678999999999999999999999999999999999999999999887654
No 182
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.67 E-value=1.8e-07 Score=75.68 Aligned_cols=67 Identities=27% Similarity=0.538 Sum_probs=51.4
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec--------CCc-eEEEEEEE-cCee--ecCCCCC
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP 87 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~g-~y~ykFiV-Dg~w--~~d~~~p 87 (426)
.++|+ |...|++|+|+|+||+|++. .+|.+.+ .|.|++.++. +.| .|.|++.. ||+| +.||-..
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 46787 55569999999999999874 6899864 7999999874 455 57777776 7876 5788766
Q ss_pred eee
Q 014342 88 HVS 90 (426)
Q Consensus 88 ~~~ 90 (426)
.+.
T Consensus 84 ~~~ 86 (99)
T cd02854 84 YVT 86 (99)
T ss_pred EEE
Confidence 544
No 183
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.66 E-value=3.3e-07 Score=93.93 Aligned_cols=137 Identities=20% Similarity=0.338 Sum_probs=109.3
Q ss_pred HHHHHHH--hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC
Q 014342 145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 222 (426)
Q Consensus 145 ~~~~~~~--l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~ 222 (426)
++-+... |++.++.++|..-..++.++.+.++.++.+.+.+++.+..||++++.+.++|++..+|++........
T Consensus 194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--- 270 (429)
T COG1253 194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--- 270 (429)
T ss_pred HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence 3344444 56899999999999999999999999999999999999999999767899999999998865532100
Q ss_pred CCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342 223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (426)
Q Consensus 223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG 302 (426)
.. ... . . -+++..+++..++.++++.|.+.+.|-..|+|+ -| .+.|
T Consensus 271 ~~--------~~~-------~------------~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~G 316 (429)
T COG1253 271 DL--------DLR-------V------------L-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEG 316 (429)
T ss_pred cc--------chh-------h------------c-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEE
Confidence 00 000 0 0 136778999999999999999999999999963 34 4999
Q ss_pred EecHHhHHHHHHhhcc
Q 014342 303 LASLSDILKCICRHFK 318 (426)
Q Consensus 303 iit~~dil~~l~~~~~ 318 (426)
+||..||+..+.....
T Consensus 317 lVTleDIiEeIvGei~ 332 (429)
T COG1253 317 LVTLEDIIEEIVGEIP 332 (429)
T ss_pred EeEHHHHHHHHhCCCc
Confidence 9999999999886543
No 184
>PRK11573 hypothetical protein; Provisional
Probab=98.64 E-value=4.3e-07 Score=92.40 Aligned_cols=121 Identities=8% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (426)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (426)
...++.++.++++.++++.+.+.+.+|+||.++ +.+ +++|++..+|++..+... .. .++..+ .
T Consensus 196 r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D----~IiGiv~~kDll~~~~~~-~~---------~~~~~l--~ 258 (413)
T PRK11573 196 RNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD-SLD----DAISMLRVREAYRLMTEK-KE---------FTKENM--L 258 (413)
T ss_pred cceEEEEECCCCHHHHHHHHHhCCCceEEEEcC-CCC----ceEEEEEHHHHHHHhhcc-Cc---------CCHHHH--H
Confidence 457889999999999999999999999999963 223 599999999999754321 10 001111 1
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccc
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 403 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~ 403 (426)
..+ +++..++++.++.++++.|.+++.+-.-|+||-|...|+||..||+.-+-...+.
T Consensus 259 ~~~--------r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~d 316 (413)
T PRK11573 259 RAA--------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTT 316 (413)
T ss_pred hhc--------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCc
Confidence 111 4778899999999999999999999888999999999999999999866654433
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.58 E-value=3.7e-07 Score=89.01 Aligned_cols=167 Identities=18% Similarity=0.237 Sum_probs=113.8
Q ss_pred HHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCC
Q 014342 184 YEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP 260 (426)
Q Consensus 184 ~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (426)
-++.-...|++.+ ...-+|..+...++..+...+ .+-..+. ....+..|+.....+ ...
T Consensus 56 tr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g~-------------~~~ 117 (503)
T KOG2550|consen 56 TRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENGF-------------INN 117 (503)
T ss_pred hhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhccc-------------ccC
Confidence 3444556698865 356688888776665443211 1222121 122233443332211 234
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (426)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (426)
++...|+.++.++++...+++...+||... ...+ ++++|+||.+|+- ++.++ ...+.++|.
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~-g~~~--~KLvG~vtsrdi~-f~~~~-----------~~~~~~vmt---- 178 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTED-GKRG--SKLVGIITSRDIQ-FLEDN-----------SLLVSDVMT---- 178 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccC-Cccc--ceeEEEEehhhhh-hhhcc-----------cchhhhhcc----
Confidence 567899999999999999999999999952 2222 3799999999973 44222 223334442
Q ss_pred cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+..++.....++.++-+++.+++-..+||||++|+++.+|++.||.+
T Consensus 179 --------~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 179 --------KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred --------cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence 34477888999999999999999999999999999999999999876
No 186
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.56 E-value=1.3e-07 Score=68.08 Aligned_cols=54 Identities=19% Similarity=0.466 Sum_probs=48.2
Q ss_pred ccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHH
Q 014342 159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215 (426)
Q Consensus 159 d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~ 215 (426)
|+|.. ++++++++.++.+|++.|.++++..+||+|++ ++++|++|.+|+++++.
T Consensus 3 ~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 3 DIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred ECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 45655 78899999999999999999999999999965 89999999999988763
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.54 E-value=1.2e-06 Score=87.48 Aligned_cols=110 Identities=11% Similarity=0.218 Sum_probs=88.3
Q ss_pred eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccc
Q 014342 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (426)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (426)
....++.+..+++..|...+...+.|+++ .+ ++.|.++..++.+++... .++.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~~~~------ 308 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QGLQDVL------ 308 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cchhhhh------
Confidence 45667889999999999999999999952 34 699999999987765421 1122222
Q ss_pred ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402 (426)
Q Consensus 342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~ 402 (426)
...+.++.++++|.+++.+|.+++.. +||||++|+++|+||+.+|+..+....|
T Consensus 309 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~~~ 362 (363)
T TIGR01186 309 ------IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDSRE 362 (363)
T ss_pred ------ccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhhcc
Confidence 13556899999999999999999999 9999999999999999999998876544
No 188
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.46 E-value=2.9e-06 Score=87.00 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=96.9
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (426)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (426)
+..++.+..+.++.++++.+.+.+++|+||.++ +.+ .++|++..+|++......... ....
T Consensus 215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~D----~iiGiv~~Kdll~~~~~~~~~--------------~~~~ 275 (429)
T COG1253 215 RTDIVALDLTDTVEELIELILESGHSRIPVYDG-DLD----NIIGIVHVKDLLRALLDGQSD--------------LDLR 275 (429)
T ss_pred cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CCC----cEEEEEEHHHHHHHHhcCccc--------------cchh
Confidence 457888899999999999999999999999962 333 599999999999986644210 0000
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccccC
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 405 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~l 405 (426)
... +++..+++..++.++++.|.+++.+-.-|+||-|.+.|++|..||+..+-...+..-
T Consensus 276 ~~~--------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 276 VLV--------RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred hcc--------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 011 266789999999999999999999999999999999999999999998776555443
No 189
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.42 E-value=2.1e-07 Score=73.10 Aligned_cols=58 Identities=31% Similarity=0.650 Sum_probs=45.6
Q ss_pred eEEEEE-ecCCCceEEEEeccCC-CCCC-CCCCC-CCCCCCeEEEEEe--cCCceEEEEEEEcCee
Q 014342 21 VPVRFI-WPNGGRRVSLSGSFTR-WSEP-MPMSP-SEGCPAVFQIICR--LPPGHHQYKFYVDGEW 80 (426)
Q Consensus 21 ~~v~f~-~~~~~~~V~l~Gsf~~-W~~~-~~m~~-~~~~~~~~~~~~~--L~~g~y~ykFiVDg~w 80 (426)
..++|+ |...|++|.|++.|++ |... ++|.+ .+ +|.|+++++ +++|.++|+|.|+|..
T Consensus 11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 467787 5567999999999999 8754 68984 43 899999998 8889888888887653
No 190
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3.6e-06 Score=85.65 Aligned_cols=130 Identities=22% Similarity=0.374 Sum_probs=103.4
Q ss_pred HHHHHHHHhc--cccccccCCCCCcEEEEcCCccHHHHHHHHHHC-----CCCeeeeeeCCCCcEEEEeehHHHHHHHHH
Q 014342 144 SRDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRE 216 (426)
Q Consensus 144 ~~~~~~~~l~--~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~-----~i~slPV~D~~~~~~vGilT~~Dli~~l~~ 216 (426)
+++.++..++ +.++.-+|.. ..+++..+.|+.+|+..+++. .+..+.|+|. +++++|+++.++++.
T Consensus 119 ~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~---- 191 (451)
T COG2239 119 ERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLT---- 191 (451)
T ss_pred HHHHHHHhcCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhc----
Confidence 6777777776 7788888977 899999999999999999954 4678899996 469999999998751
Q ss_pred hccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC
Q 014342 217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS 296 (426)
Q Consensus 217 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~ 296 (426)
.++ ++ .+. .+ |.+.++++.+++...++++++.+++.-.+||+| +++
T Consensus 192 --a~~-----~~----~i~-------~i------------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd---~~~- 237 (451)
T COG2239 192 --AEP-----DE----LLK-------DL------------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD---EDN- 237 (451)
T ss_pred --CCc-----Hh----HHH-------HH------------hcccceeecccCCHHHHHHHHHHhCCeecceEC---CCC-
Confidence 100 00 111 11 345689999999999999999999999999996 345
Q ss_pred cceEEEEecHHhHHHHHHhh
Q 014342 297 CQEILYLASLSDILKCICRH 316 (426)
Q Consensus 297 ~~~lvGiit~~dil~~l~~~ 316 (426)
+++|++|..|++..+.+.
T Consensus 238 --~LiG~itiDDiidvi~eE 255 (451)
T COG2239 238 --RLIGIITIDDIIDVIEEE 255 (451)
T ss_pred --ceeeeeeHHHHHHHHHHH
Confidence 799999999999887643
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=4.3e-06 Score=84.64 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=84.6
Q ss_pred eCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccccc
Q 014342 264 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343 (426)
Q Consensus 264 v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~ 343 (426)
..++.+..+++..|...+...+.|+| +.+ +++|+++..++.+..... .++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~~-------- 343 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIE---RGN---KFVGAVSIDSLKTALTQQ------------QGLDAAL-------- 343 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEc---CCC---cEEEEEeHHHHHhhhhcC------------Cchhhhh--------
Confidence 44677899999999999999999995 345 699999999997764321 1111111
Q ss_pred CCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 344 ~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
...+.++.+++++.+|+..|.+.... +||||++|+++|+|++.++++.+...
T Consensus 344 ----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 344 ----IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ----ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 12556899999999999999998776 99999999999999999999977653
No 192
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.22 E-value=4.8e-06 Score=75.88 Aligned_cols=116 Identities=11% Similarity=0.163 Sum_probs=95.1
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (426)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (426)
+...+++..+.++.+++..|.+...+|+||+.++ .+ .+.||+-..|+|+++......+ .++++
T Consensus 76 RSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-kD----~v~GIL~AKDLL~~~~~~~~~F---------~i~~l--- 138 (293)
T COG4535 76 RSQMITLKRNQTLDECLDVIIESAHSRFPVISED-KD----HVEGILLAKDLLPFMRSDAEPF---------DIKEL--- 138 (293)
T ss_pred HHHheeccccCCHHHHHHHHHHhccccCCcccCC-ch----hhhhhhhHHHHHHHhcCCcccc---------cHHHh---
Confidence 4567889999999999999999999999999642 22 5999999999999976543221 11111
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
. +|.+.++++..|...++-+..++.+-.-||||=|.+-|++|..||+..+-..
T Consensus 139 --L--------RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 139 --L--------RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred --c--------ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence 1 5888899999999999999999988888999999999999999999876544
No 193
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.18 E-value=2.4e-05 Score=76.11 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=106.3
Q ss_pred ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (426)
Q Consensus 153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~ 232 (426)
...|+.|+|-....+..+|.+++.++..+.+...-...+|||..+-++.+||+-.+|+++.+.+... +..+
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~----- 268 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKE----- 268 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHh-----
Confidence 4788999999999999999999999999999999999999998777789999999998887754321 1111
Q ss_pred chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
++... ..+++.+++.+++.+-+..|.+++-|--.|+| +-| .+.|++|..||+..
T Consensus 269 ---d~~~~-----------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEE 322 (423)
T COG4536 269 ---DILRA-----------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEE 322 (423)
T ss_pred ---HHHHH-----------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHH
Confidence 11111 23567899999999999999999988888885 346 69999999999999
Q ss_pred HHhhcc
Q 014342 313 ICRHFK 318 (426)
Q Consensus 313 l~~~~~ 318 (426)
+...+.
T Consensus 323 IVGdft 328 (423)
T COG4536 323 IVGDFT 328 (423)
T ss_pred Hhcccc
Confidence 886655
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.06 E-value=7.3e-06 Score=67.87 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (426)
Q Consensus 349 ~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~ 395 (426)
+++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||.+
T Consensus 66 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 66 RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 46778999999999999999999999999999999999999999863
No 195
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.05 E-value=1.5e-05 Score=53.97 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=42.8
Q ss_pred eEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (426)
Q Consensus 351 v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~ 397 (426)
+.++.+++++.++++.|.+++++.+||++++++++|+++..|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45789999999999999999999999999889999999999998754
No 196
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.6e-05 Score=81.63 Aligned_cols=145 Identities=13% Similarity=0.165 Sum_probs=102.9
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccC--C--Cccc-----
Q 014342 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS--S--SLPI----- 326 (426)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~--~--~~~~----- 326 (426)
.|++|++++..-+.+...++.+....++.+||+|+.+.+. ..++.|+|-++.++..+.+..-... . ..+.
T Consensus 587 v~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~ 665 (762)
T KOG0474|consen 587 VMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFT 665 (762)
T ss_pred hccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCC
Confidence 4788999999999999999999999999999997533211 1269999999999887764421100 0 0000
Q ss_pred ------ccccccccccccccc----ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342 327 ------LQQPVSSIQLGTWVP----RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (426)
Q Consensus 327 ------~~~~v~~l~i~~~~~----~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~ 396 (426)
-..+++++.+.+..- .+...|...+.++.+++++..++.++..-+++++-||+...+++|++||+|+..+
T Consensus 666 ~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 666 FRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY 745 (762)
T ss_pred HHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence 012233332211110 1123445667789999999999999999999999999998999999999999875
Q ss_pred Hhccc
Q 014342 397 AKDKA 401 (426)
Q Consensus 397 ~~~~~ 401 (426)
-.-+.
T Consensus 746 ~~l~~ 750 (762)
T KOG0474|consen 746 RILGL 750 (762)
T ss_pred HHhcc
Confidence 54333
No 197
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.04 E-value=1.6e-05 Score=72.56 Aligned_cols=128 Identities=18% Similarity=0.273 Sum_probs=104.0
Q ss_pred ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (426)
Q Consensus 153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~ 232 (426)
...++.|+|-..++.+++..+.++.+.+..+.+..-+.-||+.+++..+.||+-.+|++.++. .....+
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F-------- 133 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPF-------- 133 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCcccc--------
Confidence 367888988888899999999999999999999999999999988889999999999887653 111111
Q ss_pred chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~ 312 (426)
.+++ +-+|.+.|+++-.+...++-+..++-|-..|+| +-.| +-|+||-.||+..
T Consensus 134 ---~i~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD--EfGg----VsGLVTIEDiLEq 187 (293)
T COG4535 134 ---DIKE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID--EFGG----VSGLVTIEDILEQ 187 (293)
T ss_pred ---cHHH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEe--ccCC----eeeeEEHHHHHHH
Confidence 1111 136778899999999999999999999999995 3444 9999999999998
Q ss_pred HHhhc
Q 014342 313 ICRHF 317 (426)
Q Consensus 313 l~~~~ 317 (426)
+....
T Consensus 188 IVGdI 192 (293)
T COG4535 188 IVGDI 192 (293)
T ss_pred Hhccc
Confidence 87543
No 198
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.95 E-value=5.6e-05 Score=79.54 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=97.1
Q ss_pred ceEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCeeeC
Q 014342 20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSG 91 (426)
Q Consensus 20 ~~~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~-----w~~d~~~p~~~d 91 (426)
...++|+ |...++.|.|.|+||+|+.. .+|.... ..|.|.++++ +++| +.|||.+++. ++.||..-....
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~ 112 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEV 112 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCC
Confidence 4567787 77789999999999999984 3454332 4699999999 9999 9999998654 266665544333
Q ss_pred CCCCeeeEEEeccCCCCCCC----CCCCCCCCCcccc-cccccCCCCcc---ccHHHHHHHHHHHHHHhccccccccCCC
Q 014342 92 NYGVVNCVYIAVPQPDMVPN----TISPETSGNMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD 163 (426)
Q Consensus 92 ~~G~~nn~~~v~~~~~~~~~----~~~~~~~~~~d~~-~~l~~~~~~~~---~~~~~l~~~~~~~~~~l~~~~~~d~~p~ 163 (426)
.-++-+ .|...++..=. -.....+-.-++- ..+| -+++.. .+-.++..++-+|-.-|+ .|+-++||.
T Consensus 113 ~p~~aS---~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElH-vGs~~~~~~~~~~e~a~~llpYl~elG-~T~IELMPv 187 (628)
T COG0296 113 GPHTAS---QVVDLPDYEWQDERWDRAWRGRFWEPIVIYELH-VGSFTPDRFLGYFELAIELLPYLKELG-ITHIELMPV 187 (628)
T ss_pred CCCCcc---eecCCCCcccccccccccccCCCCCCceEEEEE-eeeccCCCCcCHHHHHHHHhHHHHHhC-CCEEEEccc
Confidence 222222 22122122111 0000111011222 3444 234434 466777777778878887 899999998
Q ss_pred CCcE------------EE----EcCCccHHHHHHHHHHCCCCee
Q 014342 164 SGKV------------TA----LDVNLAVKQAFHVLYEQGLPMV 191 (426)
Q Consensus 164 s~~v------------i~----l~~~~sv~~A~~~l~~~~i~sl 191 (426)
.... -. ..+-.-++.-++.+..+||.-+
T Consensus 188 ~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi 231 (628)
T COG0296 188 AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI 231 (628)
T ss_pred ccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence 7321 11 1122335666666667777654
No 199
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.89 E-value=0.00013 Score=71.51 Aligned_cols=129 Identities=18% Similarity=0.260 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHH
Q 014342 137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILIL 214 (426)
Q Consensus 137 ~~~~l~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l 214 (426)
++++.+..-+....|-+.. ....+++.++.++-++++....+++..+||.+.. ..+++|+||.+|+ +++
T Consensus 96 tpe~QA~~v~~vK~~~~g~--------~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~ 166 (503)
T KOG2550|consen 96 TPEDQADMVRRVKNYENGF--------INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL 166 (503)
T ss_pred CHHHHHHHHHHHHHhhccc--------ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh
Confidence 4455444444555554433 2346778889999999999999999999998532 4689999999995 333
Q ss_pred HHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCC
Q 014342 215 RELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA 294 (426)
Q Consensus 215 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~ 294 (426)
. .+. . .+++ +|+...++...+.+|.++-+++.+.+...+||++ +.
T Consensus 167 ~---~~~-~---------~~~~-------------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~---~~ 211 (503)
T KOG2550|consen 167 E---DNS-L---------LVSD-------------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD---DK 211 (503)
T ss_pred h---ccc-c---------hhhh-------------------hcccccccccccccHHHHHHHHHhhhcCCcceec---cC
Confidence 1 110 0 0111 2455558888899999999999999999999996 34
Q ss_pred CCcceEEEEecHHhHHHH
Q 014342 295 GSCQEILYLASLSDILKC 312 (426)
Q Consensus 295 g~~~~lvGiit~~dil~~ 312 (426)
| +++.++++.|+.+.
T Consensus 212 g---elva~~~rtDl~k~ 226 (503)
T KOG2550|consen 212 G---ELVAMLSRTDLMKN 226 (503)
T ss_pred C---ceeeeeehhhhhhh
Confidence 5 69999999999875
No 200
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.85 E-value=0.00022 Score=71.37 Aligned_cols=107 Identities=10% Similarity=0.220 Sum_probs=82.1
Q ss_pred EEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcccc
Q 014342 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR 248 (426)
Q Consensus 169 ~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 248 (426)
....+.+..+|++.|..++...+.|+|.+ +++.|+++..++...+.. ... +..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~----~~~----------~~~------------ 306 (363)
T TIGR01186 254 TKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK----AQG----------LQD------------ 306 (363)
T ss_pred eecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc----CCc----------hhh------------
Confidence 44556688999999999999999999964 689999998886543321 000 010
Q ss_pred ccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342 249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (426)
Q Consensus 249 ~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~ 316 (426)
.+...+.++.++++|.+++..|.+.+.. +||+| ++| +++|+||..++++.+...
T Consensus 307 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 307 -------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD---EDQ---RLVGIVTRGSLVDALYDS 360 (363)
T ss_pred -------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC---CCC---cEEEEEEHHHHHHHHHhh
Confidence 0134456799999999999999999988 99995 346 799999999999988653
No 201
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=0.00021 Score=72.40 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=80.8
Q ss_pred EcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccccc
Q 014342 170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249 (426)
Q Consensus 170 l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 249 (426)
...+.+..+|+..|.+++..++.|+|+ +++++|+++..++...... . . .+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~-~----------~~~~~------------ 342 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ---Q-Q----------GLDAA------------ 342 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc---C-C----------chhhh------------
Confidence 345668899999999999999999996 5799999999997543321 0 0 00110
Q ss_pred cCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (426)
Q Consensus 250 ~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~ 316 (426)
+.....++.++++|.+++..|...... +||+| ++| +++|+||..++++.+...
T Consensus 343 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 -------LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVD---EDQ---QYVGIISKGMLLRALDRE 395 (400)
T ss_pred -------hccCCceeCCCCCHHHHHHHHHhCCCc-EEEEC---CCC---cEEEEEEHHHHHHHHHhc
Confidence 123456899999999999999987655 99995 346 799999999999988643
No 202
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.80 E-value=0.00013 Score=58.38 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=43.3
Q ss_pred eEEEEEecC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342 21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 21 ~~v~f~~~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
++++|..+. .|++++|+|+ |.+|++. .+|...+ .+.|++++.||++ .++|||++
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence 356777654 4899999995 7899964 5887754 6889999999987 69999996
No 203
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.80 E-value=4.6e-05 Score=61.27 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=46.5
Q ss_pred eEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 014342 21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 21 ~~v~f~~~~---~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
+.|+|+... .++.|+|+||.. +|++ .++|...+. ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 678888854 489999999998 7997 468887532 35899999999998 59999998
No 204
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00012 Score=71.31 Aligned_cols=117 Identities=11% Similarity=0.162 Sum_probs=92.6
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (426)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (426)
+..+..+..+++..++++.+...-+.|+|+..+ +-+ +++||+..+|+++++.+.... .+ ..+.
T Consensus 209 R~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~-~~D----nIiGvlh~r~llr~l~e~~~~--------~k----~d~~ 271 (423)
T COG4536 209 RNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRD-DLD----NIIGVLHVRDLLRLLNEKNEF--------TK----EDIL 271 (423)
T ss_pred ccceeeecCCCCHHHHHHHHhhCCCCceeeecC-Chh----HhhhhhhHHHHHHHhhccCcc--------cH----hHHH
Confidence 456788999999999999999999999999953 223 599999999999998765321 10 1111
Q ss_pred ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
... .++..+++.+++.+-+..|.+++-+---||||=|.+.|++|..||+.-+-.
T Consensus 272 ~~a--------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 272 RAA--------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred HHh--------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence 111 255679999999999999999888878899999999999999999975543
No 205
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.70 E-value=0.00011 Score=59.45 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=49.0
Q ss_pred EEEE-ecCCCceEEEEeccCCCC-----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCeee
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVS 90 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~-----w~~d~~~p~~~ 90 (426)
++|+ |...|++|.|+. |++|. ..++|.+.+ +|.|++.++ +.+|. .|+|.|+|. ...||......
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence 6775 666699999998 88886 346898743 899999987 45565 488888775 67888777655
Q ss_pred C
Q 014342 91 G 91 (426)
Q Consensus 91 d 91 (426)
.
T Consensus 86 ~ 86 (100)
T cd02860 86 A 86 (100)
T ss_pred e
Confidence 3
No 206
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.67 E-value=0.00033 Score=57.06 Aligned_cols=68 Identities=28% Similarity=0.501 Sum_probs=45.6
Q ss_pred EEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEc-Ce--eecCCCCCeeeC
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVD-GE--WRHDENQPHVSG 91 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-L~~g~-y~ykFiVD-g~--w~~d~~~p~~~d 91 (426)
++|+ |...|++|.|+++|++|.. ..+|.+.+ ..|.|.+.++ +++|. |.|++..+ |. .+.||....++.
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~ 97 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL 97 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence 5676 5667999999999999965 35888754 3799999886 66664 55544443 33 345665544443
No 207
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00016 Score=74.50 Aligned_cols=154 Identities=13% Similarity=0.108 Sum_probs=104.1
Q ss_pred HHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCC----CcEEEEeehHHHHHHHHHhc--cC-CC
Q 014342 150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK----GRFVGVLSALDFILILRELG--TN-GS 222 (426)
Q Consensus 150 ~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~----~~~vGilT~~Dli~~l~~~~--~~-~~ 222 (426)
..+.+.++.|+|.. +++++..-..+...+++|...+-.+-||+|+.. +++.|+|-.+.++..++... ++ ..
T Consensus 577 ~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~ 654 (762)
T KOG0474|consen 577 PYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS 654 (762)
T ss_pred hHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence 45667889999977 899999999999999999999999999999643 47889888888777665322 11 11
Q ss_pred CCChhhhcccchhhhHHHHH---------hhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCC
Q 014342 223 NLTEEELETHTISAWKVGKL---------QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293 (426)
Q Consensus 223 ~~~~~~l~~~~i~~~~~~~~---------~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~ 293 (426)
..........+.++..++.. ..++. -.|-.. .|...+.++.+++++..+..++..-|++++.|+.+ .
T Consensus 655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~-yvDl~p-~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--~ 730 (762)
T KOG0474|consen 655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEM-YVDLHP-FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--T 730 (762)
T ss_pred ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhh-cccccc-ccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--C
Confidence 11111111111111111000 00000 111111 24566789999999999999999999999999953 3
Q ss_pred CCCcceEEEEecHHhHHHHH
Q 014342 294 AGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 294 ~g~~~~lvGiit~~dil~~l 313 (426)
. +++|++|++|+.++-
T Consensus 731 ~----~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 731 N----RVVGILTRKDLARYR 746 (762)
T ss_pred C----ceeEEEehhhhhhHH
Confidence 3 489999999998764
No 208
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.65 E-value=0.00012 Score=77.66 Aligned_cols=52 Identities=29% Similarity=0.412 Sum_probs=47.7
Q ss_pred CCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 348 ~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
.++++++++++++.+|+++|.+++++.+||+|++|+++|+||..||.+....
T Consensus 75 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~ 126 (546)
T PRK14869 75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD 126 (546)
T ss_pred CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence 3578899999999999999999999999999999999999999999986554
No 209
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.58 E-value=0.00042 Score=55.26 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=44.0
Q ss_pred eEEEEEecC---CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342 21 VPVRFIWPN---GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 21 ~~v~f~~~~---~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
+.++|+..+ .|+.++|+|+-. +|++..+|... .+.|++.+.+|++ .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 567787765 489999999874 89987788764 4579999999998 69999998
No 210
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00012 Score=60.57 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=47.1
Q ss_pred ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHH
Q 014342 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211 (426)
Q Consensus 155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli 211 (426)
.++.|+|.. .+.+++.+.++.+|+++|.++++..+||+|+ +++++|++|..|+.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhh
Confidence 567788865 5677899999999999999999999999995 47899999999975
No 211
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.52 E-value=0.00055 Score=57.41 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=43.9
Q ss_pred EEEEEecC----CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc
Q 014342 22 PVRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD 77 (426)
Q Consensus 22 ~v~f~~~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVD 77 (426)
.++|+..+ .++.|+|+|+ +.+|++. .+|.+.....+.|++++.||++ .++|||++.
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 35666644 4899999999 8899854 5887752135789999999998 799999994
No 212
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.45 E-value=0.00087 Score=54.20 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=43.1
Q ss_pred ceEEEEEecC----CCceEEEEe---ccCCCCCCC-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342 20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 20 ~~~v~f~~~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
.++|+|+... .|++++|+| .+.+|++.. +|.... ...+.|++++.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4789999743 389999999 667998742 343221 235789999999998 59999998
No 213
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.36 E-value=0.0005 Score=74.24 Aligned_cols=64 Identities=23% Similarity=0.426 Sum_probs=47.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-------CCceEEEEEEEc---Ce--eecCCCCC
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQP 87 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-------~~g~y~ykFiVD---g~--w~~d~~~p 87 (426)
.++|+ |.+.|++|+|+|+||+|+.. .+|.+.+ .|+|++.++- +.|. .|||.|. |. ++.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence 46676 77789999999999999875 5898865 7999999873 4453 6677763 54 46677654
Q ss_pred e
Q 014342 88 H 88 (426)
Q Consensus 88 ~ 88 (426)
.
T Consensus 192 ~ 192 (758)
T PLN02447 192 Y 192 (758)
T ss_pred e
Confidence 3
No 214
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.34 E-value=0.00058 Score=73.58 Aligned_cols=65 Identities=26% Similarity=0.595 Sum_probs=49.2
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCee
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV 89 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiV---Dg~w--~~d~~~p~~ 89 (426)
-|+|+ |...|++|+|+|+||+|+.. .+|.+. ..|+|++.++ +.+| ..|||.| ||.+ ..||-....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~ 211 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT 211 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence 56786 56669999999999999874 589875 4899999985 6677 3566666 7865 467766544
No 215
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.34 E-value=0.00068 Score=45.44 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=40.8
Q ss_pred EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHH
Q 014342 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL 214 (426)
Q Consensus 167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l 214 (426)
.++++.+.++.++.+.|.++++..+||++++ ++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 4567889999999999999999999999864 7899999999986543
No 216
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0029 Score=65.59 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=88.3
Q ss_pred CceEeCCC-CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC---Ccccccccccccc
Q 014342 260 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQ 335 (426)
Q Consensus 260 ~~v~v~~~-~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~---~~~~~~~~v~~l~ 335 (426)
.++++..+ .++.|...+|.+...+.+||+-+ ++.. +++|.+.++++...+....+.... ....+..+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 35555555 79999999999999999999864 2333 799999999987766532211110 0001111111111
Q ss_pred cccccc-ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342 336 LGTWVP-RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (426)
Q Consensus 336 i~~~~~-~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~ 398 (426)
-+...+ +....+...+.++...++...+++++.+-+++.+-|. ++|++.|+||+.|+++..+
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR 695 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence 000000 0111233566789999999999999999999999665 5899999999999998654
No 217
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.29 E-value=0.0023 Score=52.14 Aligned_cols=55 Identities=27% Similarity=0.494 Sum_probs=44.0
Q ss_pred ceEEEEEecC-----CCceEEEEeccC---CCCCCC-----CCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342 20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 20 ~~~v~f~~~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
.+||+|+... .|++++|+|+-. +|++.. +|... ....|.+++.||.| .++|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~--~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP--NWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC--CCCCEEEEEEcCCCCcEEEEEEE
Confidence 3789999863 378999999876 899732 66543 35789999999998 59999998
No 218
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.28 E-value=0.00088 Score=54.54 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=40.6
Q ss_pred EEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE 79 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~ 79 (426)
+.|+ |...|++|.|+. |++|. ..++|.+.+ +|+|.+.++ +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence 5675 666699999999 77665 246898754 799999984 56665 799999994
No 219
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.16 E-value=0.0015 Score=52.39 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=42.9
Q ss_pred eEEEEEecC----CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 014342 21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV 76 (426)
Q Consensus 21 ~~v~f~~~~----~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g~-y~ykFiV 76 (426)
++++|+..+ +++.++|+|+=. +|+...+|...+ .+.|++++.||++. ++|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence 456777643 357789999875 799878997654 57899999999985 9999998
No 220
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.13 E-value=0.0013 Score=70.96 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=48.8
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEE-cCee--ecCCCCCeee
Q 014342 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS 90 (426)
Q Consensus 22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~y~ykFiV-Dg~w--~~d~~~p~~~ 90 (426)
.++|+. .+.|++|+|+|+||+|.+. .+|.+.. .|+|.+.++ +++| .|.|++.. +|.| ..||......
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 578874 4569999999999999875 5898763 799999998 4455 57777654 5665 4566554443
No 221
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.06 E-value=0.0013 Score=70.57 Aligned_cols=66 Identities=30% Similarity=0.585 Sum_probs=48.6
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-CCceEEEEEEEcC---ee--ecCCCCCeee
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHVS 90 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-~~g~y~ykFiVDg---~w--~~d~~~p~~~ 90 (426)
-++|+ |.+.|++|.|+|+||+|... .+|.+.+ .|.|++.++- .+| ..|||.|+| .+ +.||-.....
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~ 112 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE 112 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe
Confidence 46776 66679999999999999874 5898764 6999999864 455 468888854 33 5666655443
No 222
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.04 E-value=0.0013 Score=74.55 Aligned_cols=65 Identities=25% Similarity=0.562 Sum_probs=48.0
Q ss_pred ceEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Cee--ecCCCC
Q 014342 20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQ 86 (426)
Q Consensus 20 ~~~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD---g~w--~~d~~~ 86 (426)
..-++|+ |...|++|+|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|. |.| ..||-.
T Consensus 637 ~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 637 VDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred CCeEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 3456776 66779999999999999875 5887643 3799999985 77885 6777774 544 455544
No 223
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.03 E-value=0.0025 Score=52.12 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=44.5
Q ss_pred cceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEecCCce-EEEEEEE
Q 014342 19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV 76 (426)
Q Consensus 19 ~~~~v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~-y~ykFiV 76 (426)
..++++|...+ .|+.|+|+|+-. +|++. .+|.... ...+.|++++.||++. ++|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 45778888754 489999999875 79974 5786431 1247899999999984 9999996
No 224
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.99 E-value=0.0024 Score=51.71 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=37.6
Q ss_pred CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342 30 GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 30 ~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
.|+.++|+|+- -+|++. ++|...+ ...|++++.+|++ .++|||++
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence 48999999994 589964 5787654 5789999999987 59999998
No 225
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.98 E-value=0.0019 Score=70.57 Aligned_cols=66 Identities=27% Similarity=0.459 Sum_probs=47.3
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-Cee--ecCCCCCe
Q 014342 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQPH 88 (426)
Q Consensus 22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~y~ykFiVD-g~w--~~d~~~p~ 88 (426)
.++|+. ...|++|.|+|+||+|... .+|.+.. ..|.|.+.++ +++| .|.|++..+ |.| ..||-.-.
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~ 204 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA 204 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence 578885 4469999999999999864 5898762 3799999985 5666 577777664 454 45554433
No 226
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.86 E-value=0.0038 Score=50.40 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=41.0
Q ss_pred EEEEecC----CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE
Q 014342 23 VRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV 76 (426)
Q Consensus 23 v~f~~~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~y~ykFiV 76 (426)
|+|+... .++.++|+|+- .+|++. ++|.... ...|++.+.+|++ .++|||++
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence 4566543 48999999986 489964 5888754 6789999999986 59999998
No 227
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.85 E-value=0.0063 Score=49.31 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=42.5
Q ss_pred ceEEEEEecC----CCceEEEEeccC---CCCCCC--CCCCC--CCCCCeEEEEEecCCc-eEEEEEEE
Q 014342 20 LVPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPS--EGCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 20 ~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
.++++|.... .|++++|+|+-. +|++.. .|... ......|.+++.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 4788898752 389999999876 899743 23211 1235689999999998 59999998
No 228
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.77 E-value=0.0049 Score=49.20 Aligned_cols=46 Identities=24% Similarity=0.472 Sum_probs=38.1
Q ss_pred CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCC--c-eEEEEEEE
Q 014342 30 GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV 76 (426)
Q Consensus 30 ~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~--g-~y~ykFiV 76 (426)
.|+.++|+|+.. +|++. ++|...+ ..+.|++.+.+|+ | .++|||++
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 12 FGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 589999999986 89863 5887653 2578999999999 7 69999998
No 229
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.71 E-value=0.0066 Score=47.47 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=45.1
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc-CeeecCCCCCeee
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS 90 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVD-g~w~~d~~~p~~~ 90 (426)
++|+ |...|++|.|+... |. ..+|.+.+ +|.|++.+.--+|. .|+|.|+ |..+.||......
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~ 73 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP 73 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence 6677 56679999999643 54 47898764 79999998643665 4777776 5678998887643
No 230
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.67 E-value=0.014 Score=60.68 Aligned_cols=136 Identities=9% Similarity=0.083 Sum_probs=87.1
Q ss_pred cEEEEcC-CccHHHHHHHHHHCCCCeeeee-eCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342 166 KVTALDV-NLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ 243 (426)
Q Consensus 166 ~vi~l~~-~~sv~~A~~~l~~~~i~slPV~-D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~ 243 (426)
.++++.. +.++.+...+|.+......||+ ++++++++|+++.+|+...+.......+.....++ .-.+.......
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~- 633 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVA- 633 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccC-
Confidence 3444444 4899999999999999999976 55678999999999987655432221111100000 00000000000
Q ss_pred hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342 244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313 (426)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l 313 (426)
+...+.+. ...+...++++...+++.-++.++.+-+++.+.|. .+| ++.|+||.+|++++.
T Consensus 634 -~~~~~~~l-k~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~----~~G---~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 634 -GIPSRLDL-KDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT----KNG---ILLGIITKKDCLRHT 694 (696)
T ss_pred -CCCCCcCc-eeeccCCcccccccCcHHHHHHHHHhhCceEEEEc----cCC---eeEeeeehHHHHHhh
Confidence 00011111 11244556889999999999999999999999987 357 799999999999864
No 231
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.60 E-value=0.0081 Score=48.33 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=42.1
Q ss_pred eEEEEEec-C---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342 21 VPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 21 ~~v~f~~~-~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
|+|+|... . .++.++|+|+-. +|++. ++|... ....|.+.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 46777743 2 489999999886 89964 577654 35789999999998 59999987
No 232
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.59 E-value=0.0055 Score=51.18 Aligned_cols=60 Identities=25% Similarity=0.491 Sum_probs=43.9
Q ss_pred EEEE-ecCCCceEEEEeccCCCC---C--CCCCCCCC-CCCCeEEEEEe-cCCceEEEEEEEcCeeecCC
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHDE 84 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~g~y~ykFiVDg~w~~d~ 84 (426)
++|+ |...|++|.|+. |++|. + .++|.+.+ +.+|+|++.++ +.+|. .|+|.|+|.|..++
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~ 76 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ 76 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence 6675 666799999999 99886 2 34776542 23699999985 66776 79999999765443
No 233
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.38 E-value=0.0084 Score=63.37 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=48.7
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-eeecCCCCCeee
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS 90 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg-~w~~d~~~p~~~ 90 (426)
|+|+ |...|++|.|++. +. ..+|.+.+ +|+|+++++ +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4675 6667999999973 33 47898865 799999996 6778 789999999 678999888754
No 234
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.18 E-value=0.0088 Score=65.51 Aligned_cols=63 Identities=8% Similarity=-0.067 Sum_probs=44.8
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCce-EEEEEEEcCe--eecCCCC
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYVDGE--WRHDENQ 86 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~-y~ykFiVDg~--w~~d~~~ 86 (426)
-++|+ |.+.|++|+|+|+||+ ....+|.+.+ ..|.|++.+++..|. |+|...-||. ...||..
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence 45665 7778999999999997 3346898753 379999999977774 5444333885 4566643
No 235
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.15 E-value=0.012 Score=63.14 Aligned_cols=67 Identities=24% Similarity=0.525 Sum_probs=48.6
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Ce--eecCCCCCeee
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHVS 90 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD---g~--w~~d~~~p~~~ 90 (426)
.++|+ |.+.|++|.|+|+||+|... .+|.+.+ ..|+|++.++ ..+|. .|+|.|+ |. ++.||-.....
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~ 103 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE 103 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence 56777 66679999999999999864 4887653 2699999986 35565 5777774 54 47787765443
No 236
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.76 E-value=0.12 Score=42.55 Aligned_cols=50 Identities=22% Similarity=0.427 Sum_probs=37.7
Q ss_pred ecCCCceEEEEeccC---CCCCC--CCCCCCC-----CCCCeEEEEEecCCc----eEEEEEEE
Q 014342 27 WPNGGRRVSLSGSFT---RWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV 76 (426)
Q Consensus 27 ~~~~~~~V~l~Gsf~---~W~~~--~~m~~~~-----~~~~~~~~~~~L~~g----~y~ykFiV 76 (426)
.-.++++++|+|+-. +|++. .+|.... .....|.+++.||++ .++|||+.
T Consensus 11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred ecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 334689999999864 89974 4676541 124579999999995 69999997
No 237
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.67 E-value=0.024 Score=45.83 Aligned_cols=54 Identities=30% Similarity=0.610 Sum_probs=39.4
Q ss_pred EEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342 23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 23 v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
++|.-.+ .|+.++|+|+-. +|++. .+|.... .....|++++.+|++ .++|||+|
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 4555543 489999999875 79764 5785421 123489999999987 59999998
No 238
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=95.52 E-value=0.13 Score=43.26 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=55.6
Q ss_pred eEEEEEec----CCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCe-----------
Q 014342 21 VPVRFIWP----NGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE----------- 79 (426)
Q Consensus 21 ~~v~f~~~----~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVDg~----------- 79 (426)
+.|||-|. .....+.|.|+.|+++. ...|.+-++ ..+|..++.||.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 46899999 33577999999999853 246888764 6899999999997 68899996433
Q ss_pred -----eecCCCCCeee-CC---CCCeeeEEEeccCC
Q 014342 80 -----WRHDENQPHVS-GN---YGVVNCVYIAVPQP 106 (426)
Q Consensus 80 -----w~~d~~~p~~~-d~---~G~~nn~~~v~~~~ 106 (426)
-+.||-||... .. .|..-++++. .++
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L-p~A 115 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL-PDA 115 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE--TTS
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeC-CCC
Confidence 36799998654 33 4889999999 544
No 239
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.81 E-value=0.074 Score=57.15 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=45.9
Q ss_pred EEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEcCe--eecCCCCCeee
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVDGE--WRHDENQPHVS 90 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g~-y~ykFiVDg~--w~~d~~~p~~~ 90 (426)
++|+ |...|++|.|++ |++|.. .++|.+.. .|+|++.++ +.+|. |.|++..+|. ++.||-.....
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~ 95 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT 95 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence 6786 556699999998 888853 35888754 799999987 45563 4444444565 48888876543
No 240
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.22 E-value=0.086 Score=53.22 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=41.1
Q ss_pred CeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (426)
Q Consensus 350 ~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~ 398 (426)
.+.++++++++.+++..+.+.+.. +||+|+ |+++|+|++.+|+..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 556789999999999999887764 889986 99999999999998664
No 241
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.17 E-value=0.076 Score=41.76 Aligned_cols=61 Identities=23% Similarity=0.480 Sum_probs=36.7
Q ss_pred EEEEEecC------CCceEEEEeccCCCCCC--CCCCCCC--CCCCeEEEEEecCCceEEEEEEE-cC--eeec
Q 014342 22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH 82 (426)
Q Consensus 22 ~v~f~~~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~y~ykFiV-Dg--~w~~ 82 (426)
++++.|.. ++.+|++.+.|++|+.. .+|.+.. ...+.|++++.+|...|+..|+- || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 45555532 37889999999999975 3566542 12689999999999988888887 65 4633
No 242
>PLN02316 synthase/transferase
Probab=94.00 E-value=0.18 Score=56.79 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=43.4
Q ss_pred CceEEEEeccCCCCCC---CCCCCCCCCCCeEEEEEecCCceEEEEEEE-cCeeecC
Q 014342 31 GRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKFYV-DGEWRHD 83 (426)
Q Consensus 31 ~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~L~~g~y~ykFiV-Dg~w~~d 83 (426)
..+|.|.|.||+|... .+|.+.+..+++|.+++.+|++-|..-|+. ||.-.+|
T Consensus 170 ~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yD 226 (1036)
T PLN02316 170 EPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYD 226 (1036)
T ss_pred CCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccc
Confidence 5789999999999864 378777655789999999999999999997 7743333
No 243
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.88 E-value=0.11 Score=50.42 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=68.2
Q ss_pred CHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCC
Q 014342 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG 348 (426)
Q Consensus 269 sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~ 348 (426)
.-..++..+.+.+.+.+-+++ ..+ +.+|+++..+..+.. + .
T Consensus 294 ~~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~~--------------------~-------------~ 334 (386)
T COG4175 294 GPRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKAA--------------------L-------------I 334 (386)
T ss_pred ccchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhccc--------------------c-------------c
Confidence 344677778877777777773 233 588998887766540 0 0
Q ss_pred CCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (426)
Q Consensus 349 ~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~ 399 (426)
.++.++..++++.+.+..+.+... .+||||++|+++|+|++..++..+..
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 255678899999999888877665 68999999999999999999987653
No 244
>PLN02950 4-alpha-glucanotransferase
Probab=93.67 E-value=0.44 Score=53.31 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=45.8
Q ss_pred CCCcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342 16 VGSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (426)
Q Consensus 16 ~~~~~~~v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV 76 (426)
..+..+.++|.-++ -|++|+|+|+-. +|+.. .+|.... .....|++++.||+| ..+|||++
T Consensus 4 ~~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 4 KSLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 34556778888764 389999999985 79864 5786542 113489999999997 59999995
No 245
>PLN02950 4-alpha-glucanotransferase
Probab=93.55 E-value=0.49 Score=52.96 Aligned_cols=72 Identities=19% Similarity=0.389 Sum_probs=53.2
Q ss_pred CCCcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE---cC--e
Q 014342 16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--E 79 (426)
Q Consensus 16 ~~~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~y~ykFiV---Dg--~ 79 (426)
.++..++|+|+... .|++|+|+|+=. +|++. .+|.... ...|.+++.+|++ ..+|||++ +| .
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence 45667889998654 489999999876 89964 4676543 6789999999988 49999998 44 3
Q ss_pred eecCCCCCee
Q 014342 80 WRHDENQPHV 89 (426)
Q Consensus 80 w~~d~~~p~~ 89 (426)
|-..++.-..
T Consensus 226 WE~g~NR~~~ 235 (909)
T PLN02950 226 LELGVNRELS 235 (909)
T ss_pred EeeCCCceee
Confidence 6555554333
No 246
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.32 E-value=0.33 Score=52.88 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=40.2
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCC----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~w 80 (426)
-+.|+ |...|++|.|+ -|++|.. .++|.+.. +|+|.+.++ +.+|. .|+|.|+|.|
T Consensus 15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence 36777 45569999997 5665542 35787754 799999996 67776 4999999854
No 247
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=92.24 E-value=0.75 Score=47.01 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=59.4
Q ss_pred CCcceEEEEEecCC-C-------ceEEEE--eccC--CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C--
Q 014342 17 GSILVPVRFIWPNG-G-------RRVSLS--GSFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G-- 78 (426)
Q Consensus 17 ~~~~~~v~f~~~~~-~-------~~V~l~--Gsf~--~W~~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVD---g-- 78 (426)
....+.|||-|.++ + +.|+|- |..+ .+....+|.+-.+ ..+|..++.||.. +-.|+|++. .
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence 45678999999973 2 358873 2222 1333347888864 6899999999998 799999982 1
Q ss_pred -----------------------eeecCCCCCeee-CCCCCeeeEEEe
Q 014342 79 -----------------------EWRHDENQPHVS-GNYGVVNCVYIA 102 (426)
Q Consensus 79 -----------------------~w~~d~~~p~~~-d~~G~~nn~~~v 102 (426)
.-+.||.||... +..|+..|++++
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l 161 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM 161 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence 114789888654 445655688888
No 248
>PLN02316 synthase/transferase
Probab=91.47 E-value=0.88 Score=51.43 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=50.3
Q ss_pred ceEEEEEecC------CCceEEEEeccCCCCCCC----CCCCCC-CCCCeEEEEEecCCceEEEEEEE-cCeeecCCCCC
Q 014342 20 LVPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGEWRHDENQP 87 (426)
Q Consensus 20 ~~~v~f~~~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~L~~g~y~ykFiV-Dg~w~~d~~~p 87 (426)
--++++.|+. ++.+|++.|.||+|+... .|.+.+ ..++.|.+++.+|+.-|-.-|+. ||. |...
T Consensus 328 G~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~~~~ 403 (1036)
T PLN02316 328 GDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----PGNA 403 (1036)
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----cccc
Confidence 3466777762 368899999999999632 233333 23568999999999999999997 773 3344
Q ss_pred eeeCCCCCee
Q 014342 88 HVSGNYGVVN 97 (426)
Q Consensus 88 ~~~d~~G~~n 97 (426)
...|.+++..
T Consensus 404 ~~yDNn~~~D 413 (1036)
T PLN02316 404 RNYDNNGRQD 413 (1036)
T ss_pred cccccCCCcc
Confidence 4444444333
No 249
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.28 E-value=0.53 Score=53.63 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=46.9
Q ss_pred EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEe-cCCc-----eEEEEEEEcC----eeecCCCCC
Q 014342 23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP 87 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-L~~g-----~y~ykFiVDg----~w~~d~~~p 87 (426)
++|+ |...|++|.|++ .+++|.. .++|.+.+ .|+|++.++ +.+| -+.|+|.|++ ..+.||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 6676 666799999998 4556654 46898754 799999987 4442 3788888876 457887765
Q ss_pred ee
Q 014342 88 HV 89 (426)
Q Consensus 88 ~~ 89 (426)
..
T Consensus 407 al 408 (1111)
T TIGR02102 407 SL 408 (1111)
T ss_pred EE
Confidence 43
No 250
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.25 E-value=0.33 Score=45.79 Aligned_cols=109 Identities=22% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccc--cCCC---cc-cccccccccccccccc
Q 014342 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH--SSSS---LP-ILQQPVSSIQLGTWVP 341 (426)
Q Consensus 268 ~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~--~~~~---~~-~~~~~v~~l~i~~~~~ 341 (426)
..+.||+++ ..++.|++ .| +++-.-+..+|++..+..|-. .+.+ .. +...++.+.+.....
T Consensus 194 HDidEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~- 260 (309)
T COG1125 194 HDIDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP- 260 (309)
T ss_pred cCHHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccccc-
Confidence 456788765 46888984 36 799999999888754433211 0000 00 011112221110000
Q ss_pred ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (426)
Q Consensus 342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~ 396 (426)
....+ +.......+++..+...+.+.+||||++|+++|.+|+.+|+..
T Consensus 261 ----~~~~~---~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 261 ----ADGEP---LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ----ccCCc---cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 00011 2333444558888899999999999999999999999998753
No 251
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=89.83 E-value=1.4 Score=49.11 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=45.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------Ce----eecCCCCC
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP 87 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD------g~----w~~d~~~p 87 (426)
-++|+ |...|++|.|++..++|. ...+|.+.+ ..|+|++.++ ...|. .|+|.|+ |. ...||...
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 46676 666799999997766664 236898753 3799999986 34454 3666664 53 36888776
Q ss_pred eee
Q 014342 88 HVS 90 (426)
Q Consensus 88 ~~~ 90 (426)
...
T Consensus 214 als 216 (898)
T TIGR02103 214 SLS 216 (898)
T ss_pred eEc
Confidence 553
No 252
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.48 E-value=0.73 Score=44.89 Aligned_cols=136 Identities=17% Similarity=0.255 Sum_probs=85.3
Q ss_pred CCCCccc-cHHHHHH--HHHHHHHHhcc------ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCc
Q 014342 130 PEGFAQY-SEADLQL--SRDRISSFLST------HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGR 200 (426)
Q Consensus 130 ~~~~~~~-~~~~l~~--~~~~~~~~l~~------~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~ 200 (426)
.++..++ .++++-. +-.=+++|... .++.++|..-...+.-.....-..|.+.+.+.....+-+++ ..++
T Consensus 240 dG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~ 318 (386)
T COG4175 240 DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNK 318 (386)
T ss_pred CCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHh-ccCc
Confidence 3444443 3344433 33344555543 35666776421222222222335788888888877777777 5567
Q ss_pred EEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC
Q 014342 201 FVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 280 (426)
Q Consensus 201 ~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~ 280 (426)
++|+++..+.+.. .+..++.++.+++++.+.+..+.+.
T Consensus 319 ~~g~v~~~~~~~~------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~ 356 (386)
T COG4175 319 FVGVVSIDSLVKA------------------------------------------ALIDDVLTVDADTPLSEILARIRQA 356 (386)
T ss_pred eeeEEeccchhcc------------------------------------------cccccccccCccchHHHHHHHHhcC
Confidence 8999877654321 0134567788999999988887775
Q ss_pred CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342 281 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICR 315 (426)
Q Consensus 281 ~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~ 315 (426)
. ..+||+| +++ +++|+++...++.++..
T Consensus 357 ~-~p~aVvd---e~~---r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 357 P-CPVAVVD---EDG---RYVGIISRGELLEALAR 384 (386)
T ss_pred C-CceeEEc---CCC---cEEEEecHHHHHHHHhc
Confidence 4 5678885 345 79999999999998764
No 253
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.15 E-value=0.84 Score=49.46 Aligned_cols=55 Identities=22% Similarity=0.441 Sum_probs=40.0
Q ss_pred EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~w 80 (426)
-+.|+ |...|++|.|+. |++|. ..++|.+.. +|+|++.++ +.+|. .|+|.|+|.|
T Consensus 20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEcccc
Confidence 36786 556699999997 77653 236787643 799999986 55564 5999998853
No 254
>PLN02960 alpha-amylase
Probab=89.14 E-value=0.47 Score=52.24 Aligned_cols=54 Identities=31% Similarity=0.586 Sum_probs=39.7
Q ss_pred EEEE-EecCCCceEEEEeccCCCCCCC-CCC-----CCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 014342 22 PVRF-IWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPGH-------HQYKFYVD 77 (426)
Q Consensus 22 ~v~f-~~~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~~~~~~~~~--L~~g~-------y~ykFiVD 77 (426)
-+.| .|..+|+.++|+|+||||.++. +|. +++ =|+|.++++ |..|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 4444 5999999999999999999864 444 554 589999984 66552 35666664
No 255
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=87.35 E-value=2.3 Score=42.98 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=39.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314 (426)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~ 314 (426)
.+.++.+++++.+++..+.+.+ +-+||++ + | +++|+|+..++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~---~-~---~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTG-GAILLVE---N-G---RIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCC-CCeEEee---C-C---eEEEEEeHHHHHHHHh
Confidence 4567899999999999888866 5588884 2 6 7999999999998875
No 256
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.99 E-value=22 Score=33.95 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHH---
Q 014342 136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL--- 212 (426)
Q Consensus 136 ~~~~~l~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~--- 212 (426)
|.+..|+.+...+.+-++.. +|.+..|. .||+++-- .+-|.+ .|+++=.=+..+++.
T Consensus 169 I~R~~lQ~e~~~lq~~l~kT-----------ivfVTHDi--dEA~kLad-----ri~vm~--~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 169 ITRKQLQEEIKELQKELGKT-----------IVFVTHDI--DEALKLAD-----RIAVMD--AGEIVQYDTPDEILANPA 228 (309)
T ss_pred hhHHHHHHHHHHHHHHhCCE-----------EEEEecCH--HHHHhhhc-----eEEEec--CCeEEEeCCHHHHHhCcc
Confidence 78888888877777777643 56667775 89988642 355776 378888777655543
Q ss_pred --HHHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEec
Q 014342 213 --ILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290 (426)
Q Consensus 213 --~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~ 290 (426)
++..+..... ..+................ ..++ .+ +.......+++..+...+...+||+|
T Consensus 229 n~FV~~f~g~~~----~~~~~l~~~~~~~~~~~~~---~~~~------~~---~~~~~~~~~~ls~~~~~~~~~~~Vvd- 291 (309)
T COG1125 229 NDFVEDFFGESE----RGLRLLSLVSVADAVRRGE---PADG------EP---LLEGFVDRDALSDFLARGRSVLPVVD- 291 (309)
T ss_pred HHHHHHHhcccc----ccccccchhhHHHhhcccc---cccC------Cc---cccchhhHHHHHHHHhcCCceeEEEC-
Confidence 2222221110 0000001111111110000 0011 11 12233445688888888999999995
Q ss_pred CCCCCCcceEEEEecHHhHHHH
Q 014342 291 TGPAGSCQEILYLASLSDILKC 312 (426)
Q Consensus 291 d~~~g~~~~lvGiit~~dil~~ 312 (426)
++| +++|.+|+.+++..
T Consensus 292 --~~g---~~~G~vt~~~l~~~ 308 (309)
T COG1125 292 --EDG---RPLGTVTRADLLDE 308 (309)
T ss_pred --CCC---cEeeEEEHHHHhhh
Confidence 356 79999999998864
No 257
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=81.86 E-value=1.9 Score=46.37 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=50.6
Q ss_pred CCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC--CCcEEEEEeHHHHHHHHhcccc
Q 014342 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAY 402 (426)
Q Consensus 344 ~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~--~g~lvGiis~~DI~~~~~~~~~ 402 (426)
.+.|.+++..+..+++..|..+.+....++.+|+||. +--++|.++|+.|..++..+.-
T Consensus 591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig 651 (931)
T KOG0476|consen 591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG 651 (931)
T ss_pred eeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence 3566789999999999999998888777999999996 3469999999999999887543
No 258
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=80.96 E-value=5.9 Score=32.21 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=38.6
Q ss_pred cceEEEEEecC-CCceEEEEeccCC--CCC-CCCCCCCCCCC--CeEEEEEecCCceEEEEEEE
Q 014342 19 ILVPVRFIWPN-GGRRVSLSGSFTR--WSE-PMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV 76 (426)
Q Consensus 19 ~~~~v~f~~~~-~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~L~~g~y~ykFiV 76 (426)
..+.++++-+. +.++|.|.-.-+. |.. ..+|.+....+ ..|+++++++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 45555555543 4678888654332 222 46898765322 35999999888999999998
No 259
>PLN03244 alpha-amylase; Provisional
Probab=79.98 E-value=2.1 Score=46.77 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=39.1
Q ss_pred CCCCCCCCcceEEE-EEecCCCceEEEEeccCCCCCCCC------CCCCCCCCCeEEEEEe--cCCc
Q 014342 11 ENSGVVGSILVPVR-FIWPNGGRRVSLSGSFTRWSEPMP------MSPSEGCPAVFQIICR--LPPG 68 (426)
Q Consensus 11 ~~~~~~~~~~~~v~-f~~~~~~~~V~l~Gsf~~W~~~~~------m~~~~~~~~~~~~~~~--L~~g 68 (426)
+-++.+.....-+. -.|..||.--+|+|+||||.++.. |-+++ =|+|.+.++ |..|
T Consensus 121 e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 121 EILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREG 185 (872)
T ss_pred hhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcC
Confidence 34444444433344 459999999999999999998632 44554 589999984 6655
No 260
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=78.35 E-value=2.3 Score=45.73 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=30.5
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCCC-CCC-CCCCCCCeEEEEEe
Q 014342 23 VRFI-WPNGGRRVSLSGSFTRWSEPM-PMS-PSEGCPAVFQIICR 64 (426)
Q Consensus 23 v~f~-~~~~~~~V~l~Gsf~~W~~~~-~m~-~~~~~~~~~~~~~~ 64 (426)
+.|+ |...++.|.++|+||+|.... .+. ++ ..|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~--~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKD--DLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCccc--ccceeEEecC
Confidence 6565 777899999999999999853 333 33 3788998876
No 261
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=77.03 E-value=9.8 Score=44.42 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=41.3
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCC----CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 014342 22 PVRFIW-PNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (426)
Q Consensus 22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~w 80 (426)
-|.|+. ...|++|.|+ -|++|... ++|... .+++|.+.+. +.+|. .|+|.|+|.|
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~--~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPGR--TGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCC--cCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 478875 4569999998 89998643 466443 3789998875 77887 6999999855
No 262
>PLN02877 alpha-amylase/limit dextrinase
Probab=76.22 E-value=12 Score=42.29 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=34.3
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEecCCceEEEEEEEc
Q 014342 22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77 (426)
Q Consensus 22 ~v~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVD 77 (426)
.++|+ |...|++|.|+- |++|.. ..+|. ..+|+|++.++-..--+.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEGCYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCCCeeEEEEe
Confidence 46675 666799999985 666532 24575 238999999874332344777775
No 263
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=74.14 E-value=9.9 Score=29.37 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=41.5
Q ss_pred CCcceEEEEEecCCC---ceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEE-c-CeeecC
Q 014342 17 GSILVPVRFIWPNGG---RRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRHD 83 (426)
Q Consensus 17 ~~~~~~v~f~~~~~~---~~V~l~Gsf-~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiV-D-g~w~~d 83 (426)
.+.-.-+.+.+.+++ ..|.|.++= .+|. +|.+.- +..|.+.-.++.|-+.||+.. | |+++..
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 355566777777653 679999544 4585 688875 679999887777889999988 7 887653
No 264
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.82 E-value=9.2 Score=40.65 Aligned_cols=66 Identities=21% Similarity=0.411 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCe----eecCCCCCeeeCCCCCeeeEEEeccCCCCCCCC
Q 014342 42 RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE----WRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNT 112 (426)
Q Consensus 42 ~W~~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVDg~----w~~d~~~p~~~d~~G~~nn~~~v~~~~~~~~~~ 112 (426)
.|.. +.+.|..-.+|.|.+.|+++|| .|.|+|.|+++ |=+......-.+ | ...-|.| .+....|.+
T Consensus 84 hWhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~--G-~~G~liI-~~~~~~p~p 154 (563)
T KOG1263|consen 84 HWHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT--G-VFGALII-NPRPGLPVP 154 (563)
T ss_pred Eecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc--C-ceeEEEE-cCCccCCCC
Confidence 3665 5555554446788899999999 59999999954 666555554443 3 3445666 444444433
No 265
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=66.72 E-value=20 Score=30.23 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=33.5
Q ss_pred eEEEEEecCC-CceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 014342 21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (426)
Q Consensus 21 ~~v~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~yk 73 (426)
-+|+|.|... +.+|...++..-|... .+.-. .+..|+.+++- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~--~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAG--INESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-ccccC--CCcceEEEecc-cceEEEE
Confidence 3678999887 9999999998544432 22211 14567777774 9999985
No 266
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=65.47 E-value=9.1 Score=31.70 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCcceEEEEEecC-CCceEEEE-eccCCC----CC-CCCCCCCC--CCCCeEEEEEecCCceEEEEEEE
Q 014342 17 GSILVPVRFIWPN-GGRRVSLS-GSFTRW----SE-PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYV 76 (426)
Q Consensus 17 ~~~~~~v~f~~~~-~~~~V~l~-Gsf~~W----~~-~~~m~~~~--~~~~~~~~~~~L~~g~y~ykFiV 76 (426)
....+.++|+=.. +.++|.|. |+=.+| .. ..+|.+.. +.-..|+++++++..+..|.|.|
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l 87 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFEL 87 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEE
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEE
Confidence 4556777777653 57888885 676666 21 24777653 12348899999999999999987
No 267
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=56.63 E-value=18 Score=39.35 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=46.7
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316 (426)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~ 316 (426)
.|-+++..+..++|..|.-+.+....++.+|++++ .+.- -++|.|.++.+...+.++
T Consensus 593 iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~ 649 (931)
T KOG0476|consen 593 IMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRH 649 (931)
T ss_pred eccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhh
Confidence 36789999999999999887777666999999974 3333 599999999999888764
No 268
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=51.29 E-value=30 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=23.0
Q ss_pred CcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342 372 VSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402 (426)
Q Consensus 372 i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~ 402 (426)
...+=|||++|+.+|+++.++-+.++...-.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~l 42 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKGL 42 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcCC
Confidence 4567788999999999999999988876533
No 269
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=47.32 E-value=75 Score=26.28 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=24.9
Q ss_pred eEEEEEecCCCceEEEE-eccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 014342 21 VPVRFIWPNGGRRVSLS-GSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (426)
Q Consensus 21 ~~v~f~~~~~~~~V~l~-Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~yk 73 (426)
-+|+|+|...++.|... +..- +... .... ..+..|+.++. .||.|.|.
T Consensus 23 dTV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 23 DTVTFVPTDKGHNVETIKGMIP-EGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CEEEEEECCCCeeEEEccCCCc-CCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 36788888777766542 2111 1110 1111 11455777766 67888774
No 270
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=46.22 E-value=43 Score=30.25 Aligned_cols=40 Identities=33% Similarity=0.758 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecC-CceEEEEEE--Ec--CeeecC
Q 014342 41 TRWSEPMPMSPSEGCPAVFQIICRLP-PGHHQYKFY--VD--GEWRHD 83 (426)
Q Consensus 41 ~~W~~~~~m~~~~~~~~~~~~~~~L~-~g~y~ykFi--VD--g~w~~d 83 (426)
..|+. .||.... +..|...+.+. +|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~g--nDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLG--NDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EEST--S-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCC--CCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 45987 7999874 88999998775 599999877 56 346664
No 271
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=45.65 E-value=42 Score=35.26 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=84.7
Q ss_pred HHHHHHhccccccccCCCCCcEEEEcCCccHH-HHHHHHHHCCCCeeeeeeCCCCcEEEE-eehHHHHHHHHHhccCCCC
Q 014342 146 DRISSFLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGV-LSALDFILILRELGTNGSN 223 (426)
Q Consensus 146 ~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~-~A~~~l~~~~i~slPV~D~~~~~~vGi-lT~~Dli~~l~~~~~~~~~ 223 (426)
-....-|.+.++.|+|..-..+..++.+..+. +......+++...+||++.+....+|. +... ++.++. ...+
T Consensus 195 i~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~-~~~~~~----~~~~ 269 (498)
T KOG2118|consen 195 ITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMN-LLRLLQ----VEVP 269 (498)
T ss_pred hhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhh-hhhhhc----cccc
Confidence 34456677888999999998999988888877 555566699999999998654333443 2221 111111 0001
Q ss_pred CChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEE
Q 014342 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL 303 (426)
Q Consensus 224 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGi 303 (426)
+ .. ..+.. .+-.++.-+.+++++.+..+.+.+.+.|.+.|.. .. .-+++
T Consensus 270 ~-----~~---~~v~~----------------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~---~~----~~~~~ 318 (498)
T KOG2118|consen 270 L-----EP---LPVSE----------------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN---GH----VDIFV 318 (498)
T ss_pred c-----cc---ccchh----------------hhccccccCCCcccHHHHHHHHhhhhceeEEEec---CC----cceee
Confidence 1 00 11111 1234556678999999999999998888887774 22 36788
Q ss_pred ecHHhHHHHH
Q 014342 304 ASLSDILKCI 313 (426)
Q Consensus 304 it~~dil~~l 313 (426)
++..++ ...
T Consensus 319 ~~l~~~-~~~ 327 (498)
T KOG2118|consen 319 LTLEDL-EEV 327 (498)
T ss_pred Eeccch-hhh
Confidence 888887 443
No 272
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=45.00 E-value=45 Score=26.13 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=25.0
Q ss_pred CCeEEEEEecCCceEEEEEEEcCeeecCCCCCe
Q 014342 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPH 88 (426)
Q Consensus 56 ~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~ 88 (426)
+|.=++.+.|+||+|...-+. |.+.+-|..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 677888999999999999887 44666666554
No 273
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=44.67 E-value=44 Score=33.57 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=28.1
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCeEEEEE--ecCCceEEEEEEEcCe
Q 014342 35 SLSGSFTRWSEPMPMSPSEGCPAVFQIIC--RLPPGHHQYKFYVDGE 79 (426)
Q Consensus 35 ~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~--~L~~g~y~ykFiVDg~ 79 (426)
.+.|+|.+= ...+.... .+|.|+..+ ..+||.|+.++.++|.
T Consensus 152 ~vvg~f~Dd--G~g~DE~p-~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFEDD--GEGLDERP-GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeeccC--CccCCCCC-CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 356666532 22233222 389999885 5578999999999985
No 274
>PRK10785 maltodextrin glucosidase; Provisional
Probab=41.86 E-value=74 Score=34.26 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=42.3
Q ss_pred CCcceEEEEEecCC--CceEEEEeccCCCCCCCCCCCCCCCC--CeEEEEEecC--CceEEEEEEE--cCe
Q 014342 17 GSILVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMSPSEGCP--AVFQIICRLP--PGHHQYKFYV--DGE 79 (426)
Q Consensus 17 ~~~~~~v~f~~~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~--~~~~~~~~L~--~g~y~ykFiV--Dg~ 79 (426)
....+.++++-+.+ .++|.|.=..++-....+|.+....+ ..|+++++++ ++++.|.|.+ +|.
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 45567777766542 57888866555544446888764322 3599999886 7889999988 553
No 275
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=41.74 E-value=84 Score=34.02 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCe
Q 014342 272 EVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPF 351 (426)
Q Consensus 272 ~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v 351 (426)
+..+.+...+ ..+++.| .+| .++.+....++++.+....-..+ ..|....++.-.+|+.. ...+|+
T Consensus 63 ~l~~~l~~~~-~~~~l~D---~~G---~vL~~~g~~~~~~~~~~~~~~~G--~~w~E~~~GTnaig~al-----~~~~pv 128 (638)
T PRK11388 63 DAWEYMADRE-CALLILD---ETG---CILSRNGDPQTLQQLSALGFNDG--TYCAEGIIGTNALSLAA-----ISGQPV 128 (638)
T ss_pred HHHHHhcCCC-cEEEEEc---CCc---eEEEEeCCHHHHHHHHHcCCccC--CccchhccCcCHHHHHH-----hcCCce
Confidence 3334454444 6777774 356 79999998888877654211111 11222222111122111 112354
Q ss_pred EEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeH
Q 014342 352 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390 (426)
Q Consensus 352 ~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~ 390 (426)
. |...+--.+. +....+.+.||.|.+|+++|+|+.
T Consensus 129 ~-v~g~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 129 K-TMGDQHFKQA---LHNWAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred E-EecHHHHHHh---ccCceEEeeEEEcCCCCEEEEEEE
Confidence 4 4333333333 344567899999999999999963
No 276
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=41.29 E-value=29 Score=27.78 Aligned_cols=17 Identities=18% Similarity=0.383 Sum_probs=10.2
Q ss_pred CCeEEEEE-ecCCceEEE
Q 014342 56 PAVFQIIC-RLPPGHHQY 72 (426)
Q Consensus 56 ~~~~~~~~-~L~~g~y~y 72 (426)
+..+++++ +++||+|+|
T Consensus 73 g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEF 90 (104)
T ss_dssp T-EEEEEEEE-S-EEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 34566665 789999887
No 277
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=37.88 E-value=33 Score=31.65 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=10.9
Q ss_pred EE-cCe--eecCCCCCeee
Q 014342 75 YV-DGE--WRHDENQPHVS 90 (426)
Q Consensus 75 iV-Dg~--w~~d~~~p~~~ 90 (426)
+| ||+ |.+||+...++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 44 884 88888776544
No 278
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=34.17 E-value=38 Score=27.63 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.5
Q ss_pred cEeeEEcCCCcEEEEEeH
Q 014342 373 SSIPIVDDNDSLLDIYSR 390 (426)
Q Consensus 373 ~~lPVVd~~g~lvGiis~ 390 (426)
-..||.|++|+++|+++.
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999989999999864
No 279
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=34.02 E-value=1.1e+02 Score=23.35 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=25.9
Q ss_pred EEEEEecCC-CceEEE-EeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 014342 22 PVRFIWPNG-GRRVSL-SGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (426)
Q Consensus 22 ~v~f~~~~~-~~~V~l-~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~yk 73 (426)
+|+|++..+ +.+|.. .|.+.++...-++.. .+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~---~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMK---KEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccC---CCCEEEEECC-CCEEEEEE
Confidence 456666654 566654 455544332222221 1456777765 68887773
No 280
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=33.48 E-value=2.5e+02 Score=22.83 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=37.9
Q ss_pred CcceEEEEEecCC--CceEEEEeccCCCCCCCCCCC--C--------CCCCCeEEEEEecCCc--------eEEEEEEEc
Q 014342 18 SILVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMSP--S--------EGCPAVFQIICRLPPG--------HHQYKFYVD 77 (426)
Q Consensus 18 ~~~~~v~f~~~~~--~~~V~l~Gsf~~W~~~~~m~~--~--------~~~~~~~~~~~~L~~g--------~y~ykFiVD 77 (426)
.....-++.-..- .|+|.|-=+|++|.....+.. . ......|...++||+. .+--+|.++
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 3344445555543 588999999999986532221 1 1112478888888753 366688888
Q ss_pred Ce
Q 014342 78 GE 79 (426)
Q Consensus 78 g~ 79 (426)
|.
T Consensus 98 g~ 99 (113)
T PF03370_consen 98 GQ 99 (113)
T ss_dssp TE
T ss_pred CC
Confidence 86
No 281
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.12 E-value=45 Score=23.81 Aligned_cols=22 Identities=36% Similarity=0.844 Sum_probs=12.9
Q ss_pred EecCCceEEEEEEE---cCeeecCC
Q 014342 63 CRLPPGHHQYKFYV---DGEWRHDE 84 (426)
Q Consensus 63 ~~L~~g~y~ykFiV---Dg~w~~d~ 84 (426)
-.||||.|.++-.+ +|.|..++
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 58999999998775 46676543
No 282
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=28.13 E-value=38 Score=26.96 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHhcCCcEeeEEcCCCcEEEE
Q 014342 367 LVQADVSSIPIVDDNDSLLDI 387 (426)
Q Consensus 367 m~~~~i~~lPVVd~~g~lvGi 387 (426)
....+-++=||+|.+|+++||
T Consensus 100 ~~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 100 DTRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp S-STTTTTSEEEETTSEEEEE
T ss_pred ccCCCcEeHhEECCCCEEEeC
Confidence 345789999999999999997
No 283
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=27.98 E-value=2.7e+02 Score=22.91 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=24.4
Q ss_pred EEEEEecC--CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEE
Q 014342 22 PVRFIWPN--GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (426)
Q Consensus 22 ~v~f~~~~--~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~yk 73 (426)
+|+|+|.. .+..|.-.+. ..|.... +... .+..|+.++. .||.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~~-~~~~--~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDESE-RVSE--EGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCccccc-cccC--CCCEEEEEec-CCcEEEEE
Confidence 45677754 2466654310 1243211 1111 1457888885 78888884
No 284
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=27.28 E-value=28 Score=29.61 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCeEEEEEecCCceEEEEEEEcCeeecCCCCCe--eeCCCCCeeeEEEeccCCCCCCC
Q 014342 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPH--VSGNYGVVNCVYIAVPQPDMVPN 111 (426)
Q Consensus 56 ~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~--~~d~~G~~nn~~~v~~~~~~~~~ 111 (426)
.|.|.. +++||.|.--..++|.-..-=..-+ ..+..|.+|.+|.-..+.+.-|.
T Consensus 46 ~G~Ys~--~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~pGTLN~fL~~~~e~dl~Pe 101 (134)
T PF08400_consen 46 AGEYSF--DVEPGVYRVTLKVEGRPPVYVGDITVYEDSKPGTLNDFLTAPDEDDLRPE 101 (134)
T ss_pred CceEEE--EecCCeEEEEEEECCCCceeEEEEEEecCCCCCcHHHHhhccccccCCHH
Confidence 677764 5689999999989985211111122 22457889999976455544444
No 285
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.56 E-value=57 Score=35.18 Aligned_cols=25 Identities=32% Similarity=0.873 Sum_probs=21.2
Q ss_pred CceEEEEEEEcCeee---cCCCCCeeeC
Q 014342 67 PGHHQYKFYVDGEWR---HDENQPHVSG 91 (426)
Q Consensus 67 ~g~y~ykFiVDg~w~---~d~~~p~~~d 91 (426)
.|.|+|||.++|+|+ .|+..|+..+
T Consensus 116 aGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 116 AGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 499999999999994 6777888765
No 286
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=24.77 E-value=3.4e+02 Score=29.37 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhc-cCCCCCChhhhcccchhhhHHHHHhhccccccCCCC
Q 014342 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNG 254 (426)
Q Consensus 176 v~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~ 254 (426)
+.+.++.|...+ ..+.+.|. +|.++.+....+++..+.... ..+..+.++...++-+....
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~-~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al---------------- 122 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDE-TGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAA---------------- 122 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcC-CceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHH----------------
Confidence 455566666666 67788886 589999888888776665422 12223333333333222211
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEec
Q 014342 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305 (426)
Q Consensus 255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit 305 (426)
....++.|...+...+ .+....+...||.+. .| +++|+++
T Consensus 123 --~~~~pv~v~g~EH~~~---~~~~~~c~aaPI~d~---~G---~liGvl~ 162 (638)
T PRK11388 123 --ISGQPVKTMGDQHFKQ---ALHNWAFCATPVFDS---KG---RLTGTIA 162 (638)
T ss_pred --hcCCceEEecHHHHHH---hccCceEEeeEEEcC---CC---CEEEEEE
Confidence 1233455555554443 344456788999952 46 7999995
No 287
>PF14044 NETI: NETI protein
Probab=23.60 E-value=96 Score=22.16 Aligned_cols=24 Identities=13% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEcCCCCHHHHHHHHHhcCCcEeeEE
Q 014342 353 MLRPTASLGSALALLVQADVSSIPIV 378 (426)
Q Consensus 353 tv~~~~~l~~a~~~m~~~~i~~lPVV 378 (426)
.+.+++++.++++.|.+.|+ .||-
T Consensus 3 eV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Ccee
Confidence 46789999999999999887 5554
No 288
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.35 E-value=76 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=19.8
Q ss_pred CcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 372 VSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 372 i~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
...+=|||++|+.+|+++..+-++.+...
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A~~~ 47 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELAEEA 47 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHHc
Confidence 44566677777777777777777766654
No 289
>PLN00115 pollen allergen group 3; Provisional
Probab=23.35 E-value=2.9e+02 Score=22.95 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=33.5
Q ss_pred CCceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc-Ceeec
Q 014342 30 GGRRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWRH 82 (426)
Q Consensus 30 ~~~~V~l~Gsf-~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD-g~w~~ 82 (426)
+-.+|.|.++= .+|.. +|.++- +..|++.-. .+.|-+.+||... |.+..
T Consensus 46 dI~~V~Ik~~g~~~W~~--~M~rsw--GavW~~~s~~pl~GPlS~R~t~~~G~~~v 97 (118)
T PLN00115 46 AISEVEIKEKGAKDWVD--DLKESS--TNTWTLKSKAPLKGPFSVRFLVKGGGYRV 97 (118)
T ss_pred CEEEEEEeecCCCcccC--ccccCc--cceeEecCCCCCCCceEEEEEEeCCCEEE
Confidence 34778888863 36751 688865 578998654 3347899999885 66543
No 290
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.18 E-value=4.7e+02 Score=25.31 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=40.9
Q ss_pred eEEEEEecCCC------ceEEEEeccCCCCCCCCCCCCCCCCCeEEEE--EecCCc-eEEEEEEE----------cCeee
Q 014342 21 VPVRFIWPNGG------RRVSLSGSFTRWSEPMPMSPSEGCPAVFQII--CRLPPG-HHQYKFYV----------DGEWR 81 (426)
Q Consensus 21 ~~v~f~~~~~~------~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~--~~L~~g-~y~ykFiV----------Dg~w~ 81 (426)
=+.+|+|...+ =+.|| +=.+|++..||.+++..-.-|..+ .-++|| .|.|.-.| =++|.
T Consensus 114 G~~~f~w~~TapH~t~~w~yYi--TK~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vWq 191 (308)
T COG3397 114 GPQTFVWKATAPHNTAYWKYYI--TKPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVWQ 191 (308)
T ss_pred CceEEEEEeecCCCCcceEEEE--CCCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEEE
Confidence 35688887643 23666 446899988888765321011111 234444 34433333 35564
Q ss_pred cCCCCCeeeCCCCCeeeEEEeccCC
Q 014342 82 HDENQPHVSGNYGVVNCVYIAVPQP 106 (426)
Q Consensus 82 ~d~~~p~~~d~~G~~nn~~~v~~~~ 106 (426)
. .|..+.++|+++| .-.
T Consensus 192 ~-------~Dt~n~Fyn~iDv-~~~ 208 (308)
T COG3397 192 R-------ADTGNAFYNCIDV-NFS 208 (308)
T ss_pred e-------ccCCCcceEEEEE-ecc
Confidence 3 2334468899998 533
No 291
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=21.69 E-value=79 Score=27.96 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=18.6
Q ss_pred cEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342 373 SSIPIVDDNDSLLDIYSRSDITALAKDK 400 (426)
Q Consensus 373 ~~lPVVd~~g~lvGiis~~DI~~~~~~~ 400 (426)
..+=|||++|..+|+++..+-++++.+.
T Consensus 8 ~~Vrli~~dG~~lgv~~~~eAl~~A~~~ 35 (165)
T TIGR00168 8 NEVRLIDENGEQLGIVSREEALEIAEEA 35 (165)
T ss_pred CEEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 4455667777777777777776666654
No 292
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=21.53 E-value=48 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=13.5
Q ss_pred ceEEEEEEEcCeeecCCC
Q 014342 68 GHHQYKFYVDGEWRHDEN 85 (426)
Q Consensus 68 g~y~ykFiVDg~w~~d~~ 85 (426)
|-|+|.|. ||.|++.-+
T Consensus 67 G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 67 GGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCccceec-CCEEEECCC
Confidence 77888884 999998743
No 293
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=21.49 E-value=90 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.558 Sum_probs=18.0
Q ss_pred EeeEEcCCCcEEEEEe----HHHHHHHHhc
Q 014342 374 SIPIVDDNDSLLDIYS----RSDITALAKD 399 (426)
Q Consensus 374 ~lPVVd~~g~lvGiis----~~DI~~~~~~ 399 (426)
+.||.+++|+++|++. ...|..++.+
T Consensus 18 s~pi~~~~g~~~Gvv~~di~l~~l~~~i~~ 47 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGIDISLDQLSEIISN 47 (81)
T ss_dssp EEEEEETTTEEEEEEEEEEEHHHHHHHHTT
T ss_pred EEEEECCCCCEEEEEEEEeccceeeeEEEe
Confidence 5799998899999754 4555554443
No 294
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=20.90 E-value=1.7e+02 Score=21.03 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=18.7
Q ss_pred CCeEEEEEecCCceEEEEEEE--cCeee
Q 014342 56 PAVFQIICRLPPGHHQYKFYV--DGEWR 81 (426)
Q Consensus 56 ~~~~~~~~~L~~g~y~ykFiV--Dg~w~ 81 (426)
+|.|... .|++|.|..+... +|-..
T Consensus 26 ~G~~~f~-~L~~G~Y~l~E~~aP~GY~~ 52 (70)
T PF05738_consen 26 NGKYTFK-NLPPGTYTLKETKAPDGYQL 52 (70)
T ss_dssp TSEEEEE-EEESEEEEEEEEETTTTEEE
T ss_pred CCEEEEe-ecCCeEEEEEEEECCCCCEE
Confidence 5666655 6899999999987 67333
No 295
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=20.89 E-value=1.3e+02 Score=32.40 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C-eeecCCCCCeeeCCCCCeeeEEEeccCCCC
Q 014342 42 RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G-EWRHDENQPHVSGNYGVVNCVYIAVPQPDM 108 (426)
Q Consensus 42 ~W~~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVD---g-~w~~d~~~p~~~d~~G~~nn~~~v~~~~~~ 108 (426)
.|.. +.+....-.+|+..+.++++|| .|.|+|.+. | -|-|....-...+ | +..-|.| ..++.
T Consensus 85 HWHG-l~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~--G-l~GalII-~~~~~ 151 (596)
T PLN00044 85 TWHG-VQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAA--G-GYGAITI-NNRDV 151 (596)
T ss_pred EECC-ccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhC--c-CeeEEEE-cCccc
Confidence 3765 4333332235555567999998 599999994 3 3877765433333 3 3445566 44333
No 296
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=20.63 E-value=1.5e+02 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=27.3
Q ss_pred CCcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342 371 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402 (426)
Q Consensus 371 ~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~ 402 (426)
++..+=++|++|+-+|+++..+-+.++.+.-.
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~L 48 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAGL 48 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcCC
Confidence 45678889999999999999999999887643
No 297
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=20.31 E-value=1.8e+02 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=11.4
Q ss_pred EEEEEecC-CCceEEEEe
Q 014342 22 PVRFIWPN-GGRRVSLSG 38 (426)
Q Consensus 22 ~v~f~~~~-~~~~V~l~G 38 (426)
+|+|.|.. .+.++.+..
T Consensus 26 tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 26 TVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEESSSSBEEEEET
T ss_pred EEEEEECCCCCceEEEec
Confidence 57788864 467776655
No 298
>PLN02991 oxidoreductase
Probab=20.05 E-value=1.3e+02 Score=31.99 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=29.6
Q ss_pred CCeEEEEEecCCc-eEEEEEEEc---C-eeecCCCCCeeeCCCCCeeeEEEe
Q 014342 56 PAVFQIICRLPPG-HHQYKFYVD---G-EWRHDENQPHVSGNYGVVNCVYIA 102 (426)
Q Consensus 56 ~~~~~~~~~L~~g-~y~ykFiVD---g-~w~~d~~~p~~~d~~G~~nn~~~v 102 (426)
+|+.-+.++++|| .|.|+|.++ | -|-|........+ |. ..-|.|
T Consensus 97 DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~--Gl-~G~lIV 145 (543)
T PLN02991 97 DGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAA--GG-FGAIRI 145 (543)
T ss_pred cCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhC--CC-eeeEEE
Confidence 5554457999999 599999994 3 3888776543332 44 556666
Done!