Query 014345
Match_columns 426
No_of_seqs 203 out of 1681
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.7 3.3E-16 7.1E-21 179.0 20.7 145 20-171 739-892 (1057)
2 PLN02919 haloacid dehalogenase 99.7 2.2E-15 4.9E-20 172.2 20.3 162 21-188 568-750 (1057)
3 KOG4659 Uncharacterized conser 99.4 6.4E-12 1.4E-16 140.4 16.5 165 5-172 391-575 (1899)
4 PF08450 SGL: SMP-30/Gluconola 99.4 3.8E-11 8.3E-16 114.8 18.9 143 9-186 71-233 (246)
5 KOG4659 Uncharacterized conser 99.3 2E-11 4.3E-16 136.6 10.7 140 21-167 533-691 (1899)
6 PF08450 SGL: SMP-30/Gluconola 99.2 3.8E-10 8.2E-15 107.9 15.7 152 23-210 42-212 (246)
7 COG3386 Gluconolactonase [Carb 98.8 1.8E-07 3.9E-12 94.2 17.5 138 20-186 110-263 (307)
8 TIGR02604 Piru_Ver_Nterm putat 98.8 2.9E-07 6.2E-12 94.2 19.2 152 7-188 1-194 (367)
9 COG3386 Gluconolactonase [Carb 98.6 1.3E-06 2.8E-11 88.1 17.3 151 23-210 69-242 (307)
10 COG3391 Uncharacterized conser 98.5 3.9E-06 8.5E-11 86.5 17.5 139 20-188 115-263 (381)
11 COG4257 Vgb Streptogramin lyas 98.5 1.7E-06 3.6E-11 85.5 13.6 134 20-188 61-199 (353)
12 PF01436 NHL: NHL repeat; Int 98.5 1.4E-07 3E-12 62.1 4.1 28 80-107 1-28 (28)
13 TIGR02604 Piru_Ver_Nterm putat 98.4 7.8E-06 1.7E-10 83.7 15.9 115 22-165 73-211 (367)
14 COG3391 Uncharacterized conser 98.3 1.5E-05 3.2E-10 82.3 16.4 133 21-188 74-217 (381)
15 KOG1520 Predicted alkaloid syn 98.3 5.5E-06 1.2E-10 84.9 11.7 134 22-186 116-273 (376)
16 COG4257 Vgb Streptogramin lyas 98.3 1.9E-05 4.1E-10 78.2 14.9 150 10-197 179-333 (353)
17 PF03088 Str_synth: Strictosid 98.3 3.1E-06 6.6E-11 70.7 7.7 66 24-108 1-85 (89)
18 PF10282 Lactonase: Lactonase, 98.3 4.2E-05 9E-10 77.6 17.0 163 20-210 143-321 (345)
19 PF01436 NHL: NHL repeat; Int 98.2 1.9E-06 4.1E-11 56.7 4.2 27 21-47 2-28 (28)
20 PF10282 Lactonase: Lactonase, 98.2 8.2E-05 1.8E-09 75.4 16.9 125 18-168 189-323 (345)
21 PRK11028 6-phosphogluconolacto 98.1 0.00015 3.2E-09 72.2 17.5 144 20-186 174-328 (330)
22 PRK11028 6-phosphogluconolacto 98.0 0.00036 7.8E-09 69.4 16.8 121 21-167 80-205 (330)
23 TIGR03606 non_repeat_PQQ dehyd 97.9 0.0013 2.9E-08 69.8 20.1 92 3-108 15-122 (454)
24 KOG1214 Nidogen and related ba 97.8 0.00023 5E-09 78.6 13.1 161 7-208 1056-1222(1289)
25 PF03088 Str_synth: Strictosid 97.8 8.6E-05 1.9E-09 62.0 7.2 68 84-168 1-88 (89)
26 KOG1214 Nidogen and related ba 97.7 0.00027 5.9E-09 78.1 12.1 133 22-187 1026-1165(1289)
27 TIGR03866 PQQ_ABC_repeats PQQ- 97.5 0.013 2.9E-07 55.4 19.6 135 22-185 158-298 (300)
28 KOG1520 Predicted alkaloid syn 97.5 0.0014 3E-08 67.6 13.2 100 81-194 115-235 (376)
29 PF07995 GSDH: Glucose / Sorbo 97.4 0.0034 7.5E-08 63.7 14.6 125 21-169 2-158 (331)
30 PF06977 SdiA-regulated: SdiA- 97.3 0.00077 1.7E-08 66.2 7.7 76 21-107 171-247 (248)
31 COG2706 3-carboxymuconate cycl 97.2 0.026 5.7E-07 57.6 17.7 146 18-186 188-343 (346)
32 PF05787 DUF839: Bacterial pro 97.0 0.0083 1.8E-07 64.9 13.1 81 20-100 349-455 (524)
33 COG2706 3-carboxymuconate cycl 97.0 0.28 6.2E-06 50.3 22.8 194 9-213 77-323 (346)
34 PF06977 SdiA-regulated: SdiA- 96.8 0.033 7.2E-07 54.8 14.3 77 79-164 169-247 (248)
35 PF03022 MRJP: Major royal jel 96.8 0.068 1.5E-06 53.5 16.8 56 140-198 189-252 (287)
36 TIGR03866 PQQ_ABC_repeats PQQ- 96.8 0.1 2.3E-06 49.3 17.0 117 32-186 1-123 (300)
37 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.075 1.6E-06 53.9 15.6 122 20-169 137-281 (336)
38 KOG4499 Ca2+-binding protein R 96.6 0.064 1.4E-06 52.7 14.6 83 80-173 157-247 (310)
39 PF02239 Cytochrom_D1: Cytochr 96.5 0.15 3.2E-06 52.9 17.0 134 23-187 39-181 (369)
40 KOG4499 Ca2+-binding protein R 96.3 0.041 8.9E-07 54.0 11.0 81 22-111 159-244 (310)
41 TIGR02658 TTQ_MADH_Hv methylam 96.3 0.17 3.7E-06 52.3 16.1 111 32-173 13-142 (352)
42 PF07995 GSDH: Glucose / Sorbo 96.2 0.029 6.2E-07 57.0 9.9 121 22-163 182-331 (331)
43 PF13449 Phytase-like: Esteras 96.0 0.21 4.5E-06 50.7 14.8 133 22-167 86-251 (326)
44 TIGR02658 TTQ_MADH_Hv methylam 95.7 0.47 1E-05 49.1 16.2 68 86-171 253-334 (352)
45 TIGR03118 PEPCTERM_chp_1 conse 95.4 1.1 2.3E-05 45.7 16.8 160 20-194 22-205 (336)
46 PF01731 Arylesterase: Arylest 95.2 0.15 3.2E-06 42.4 8.5 29 80-108 53-82 (86)
47 KOG0266 WD40 repeat-containing 95.0 0.5 1.1E-05 50.1 14.3 114 22-170 205-321 (456)
48 PF00058 Ldl_recept_b: Low-den 95.0 0.086 1.9E-06 37.7 5.8 41 32-90 1-42 (42)
49 COG3204 Uncharacterized protei 94.9 0.098 2.1E-06 52.7 7.9 70 22-101 234-304 (316)
50 COG2133 Glucose/sorbosone dehy 94.8 0.62 1.3E-05 49.0 13.8 132 22-167 240-397 (399)
51 PF03022 MRJP: Major royal jel 94.7 0.11 2.4E-06 52.0 7.9 64 22-98 187-253 (287)
52 PF02239 Cytochrom_D1: Cytochr 94.4 1.5 3.2E-05 45.5 15.5 123 21-173 78-208 (369)
53 TIGR03606 non_repeat_PQQ dehyd 94.3 0.34 7.3E-06 51.8 10.8 80 80-168 29-125 (454)
54 TIGR03032 conserved hypothetic 94.0 1.2 2.5E-05 45.7 13.3 141 22-186 104-251 (335)
55 PF05096 Glu_cyclase_2: Glutam 93.4 6.9 0.00015 39.1 17.3 132 4-173 75-209 (264)
56 PF13449 Phytase-like: Esteras 93.3 1.9 4.2E-05 43.6 13.9 95 14-112 14-123 (326)
57 COG3211 PhoX Predicted phospha 93.3 0.41 8.9E-06 52.1 9.3 80 21-100 417-519 (616)
58 PRK02888 nitrous-oxide reducta 93.1 1.3 2.9E-05 49.0 13.0 82 81-168 321-405 (635)
59 PF01731 Arylesterase: Arylest 93.1 0.31 6.6E-06 40.6 6.4 43 4-49 40-83 (86)
60 COG3204 Uncharacterized protei 93.1 3.4 7.3E-05 42.0 14.8 30 21-50 129-158 (316)
61 PF05096 Glu_cyclase_2: Glutam 93.0 2 4.4E-05 42.8 12.9 111 22-168 46-158 (264)
62 KOG0266 WD40 repeat-containing 92.8 4.6 0.0001 42.8 16.3 127 7-171 236-368 (456)
63 smart00135 LY Low-density lipo 92.7 0.26 5.6E-06 33.7 4.6 30 22-51 10-40 (43)
64 PF05787 DUF839: Bacterial pro 92.7 0.53 1.2E-05 51.2 9.3 80 78-158 347-456 (524)
65 cd00200 WD40 WD40 domain, foun 92.5 5 0.00011 36.1 14.2 107 22-164 179-288 (289)
66 PF14269 Arylsulfotran_2: Aryl 92.5 13 0.00029 37.5 18.9 90 79-173 142-246 (299)
67 KOG1215 Low-density lipoprotei 92.3 1.4 3E-05 50.5 12.3 133 22-188 481-621 (877)
68 smart00135 LY Low-density lipo 91.5 0.59 1.3E-05 31.9 5.4 35 135-169 7-41 (43)
69 KOG1446 Histone H3 (Lys4) meth 91.2 6.7 0.00014 39.9 14.3 118 23-168 143-263 (311)
70 cd00200 WD40 WD40 domain, foun 90.9 11 0.00025 33.7 16.5 111 22-169 95-209 (289)
71 PF02333 Phytase: Phytase; In 90.7 3 6.5E-05 43.7 11.8 79 17-108 204-288 (381)
72 PF14269 Arylsulfotran_2: Aryl 90.0 8.8 0.00019 38.7 14.2 131 22-169 145-291 (299)
73 PF00058 Ldl_recept_b: Low-den 89.6 1.6 3.4E-05 31.1 6.2 38 149-186 1-41 (42)
74 KOG0291 WD40-repeat-containing 89.5 9.6 0.00021 43.0 14.8 114 22-170 352-469 (893)
75 PRK02888 nitrous-oxide reducta 88.9 2.1 4.6E-05 47.4 9.4 76 20-108 320-402 (635)
76 PTZ00421 coronin; Provisional 88.9 32 0.00069 37.2 18.3 115 23-171 78-202 (493)
77 KOG0286 G-protein beta subunit 88.3 29 0.00064 35.4 16.1 111 22-166 188-302 (343)
78 KOG0289 mRNA splicing factor [ 88.0 26 0.00057 37.4 16.1 132 4-171 332-466 (506)
79 PF06739 SBBP: Beta-propeller 87.9 1 2.3E-05 31.6 4.2 29 14-42 6-34 (38)
80 KOG0281 Beta-TrCP (transducin 87.9 3.6 7.8E-05 42.7 9.6 125 26-172 241-393 (499)
81 COG3211 PhoX Predicted phospha 87.5 5.9 0.00013 43.5 11.4 80 77-158 413-520 (616)
82 KOG3567 Peptidylglycine alpha- 86.2 2.7 5.8E-05 44.9 7.9 127 22-167 169-298 (501)
83 TIGR02276 beta_rpt_yvtn 40-res 85.7 3.2 6.9E-05 28.3 5.7 39 147-185 2-41 (42)
84 COG2133 Glucose/sorbosone dehy 85.3 3.8 8.2E-05 43.2 8.5 73 22-108 315-395 (399)
85 KOG0271 Notchless-like WD40 re 85.1 19 0.0004 38.0 13.1 121 23-174 118-242 (480)
86 PF02333 Phytase: Phytase; In 84.4 58 0.0013 34.3 16.9 118 79-210 154-289 (381)
87 KOG1215 Low-density lipoprotei 84.1 12 0.00026 42.9 12.7 135 22-190 438-579 (877)
88 KOG1408 WD40 repeat protein [F 83.7 10 0.00022 42.7 11.1 113 22-167 598-713 (1080)
89 KOG0318 WD40 repeat stress pro 83.6 54 0.0012 35.9 16.1 111 22-170 365-476 (603)
90 PF06739 SBBP: Beta-propeller 83.3 1.2 2.5E-05 31.3 2.6 21 81-101 13-33 (38)
91 PF14517 Tachylectin: Tachylec 82.4 15 0.00033 36.0 10.8 114 24-171 84-210 (229)
92 KOG1274 WD40 repeat protein [G 82.3 25 0.00054 40.5 13.7 127 22-168 15-169 (933)
93 TIGR03032 conserved hypothetic 82.2 3.8 8.2E-05 42.0 6.7 55 22-98 204-258 (335)
94 KOG0263 Transcription initiati 82.0 11 0.00023 42.4 10.6 111 23-169 538-651 (707)
95 KOG0315 G-protein beta subunit 81.4 42 0.00092 33.7 13.4 143 22-200 42-198 (311)
96 PTZ00420 coronin; Provisional 80.8 97 0.0021 34.3 17.5 122 22-172 76-202 (568)
97 PF07433 DUF1513: Protein of u 80.1 31 0.00067 35.3 12.4 104 21-157 5-119 (305)
98 KOG0263 Transcription initiati 80.1 39 0.00086 38.1 14.1 44 5-51 439-482 (707)
99 KOG0272 U4/U6 small nuclear ri 79.5 31 0.00068 36.6 12.4 115 22-171 305-422 (459)
100 KOG0308 Conserved WD40 repeat- 79.4 20 0.00044 39.9 11.4 121 22-173 119-249 (735)
101 PF06433 Me-amine-dh_H: Methyl 78.8 45 0.00098 34.6 13.3 113 32-171 3-130 (342)
102 TIGR02276 beta_rpt_yvtn 40-res 76.4 12 0.00026 25.4 6.0 19 33-51 5-23 (42)
103 KOG0282 mRNA splicing factor [ 76.1 54 0.0012 35.4 13.1 87 21-108 300-413 (503)
104 COG4946 Uncharacterized protei 75.9 73 0.0016 34.7 14.0 27 86-112 335-362 (668)
105 PF05935 Arylsulfotrans: Aryls 75.2 42 0.00092 36.0 12.6 131 24-159 193-369 (477)
106 KOG0772 Uncharacterized conser 75.2 62 0.0013 35.5 13.4 74 22-108 319-392 (641)
107 PLN00181 protein SPA1-RELATED; 74.5 1.1E+02 0.0024 34.7 16.3 119 22-171 485-610 (793)
108 KOG0289 mRNA splicing factor [ 73.9 70 0.0015 34.3 13.2 69 84-169 351-421 (506)
109 KOG0291 WD40-repeat-containing 73.6 1.3E+02 0.0027 34.6 15.7 79 79-173 349-428 (893)
110 KOG0301 Phospholipase A2-activ 70.2 69 0.0015 36.1 12.6 107 22-167 181-288 (745)
111 KOG0279 G protein beta subunit 69.2 1.4E+02 0.003 30.5 15.9 113 23-168 66-181 (315)
112 PRK04792 tolB translocation pr 65.8 1.8E+02 0.004 30.7 15.6 72 25-115 222-301 (448)
113 KOG0272 U4/U6 small nuclear ri 65.7 30 0.00066 36.7 8.5 75 83-175 306-383 (459)
114 COG3823 Glutamine cyclotransfe 65.2 29 0.00063 34.1 7.7 62 31-98 185-247 (262)
115 PF13360 PQQ_2: PQQ-like domai 64.7 1.2E+02 0.0025 28.0 14.6 111 27-172 32-145 (238)
116 PTZ00420 coronin; Provisional 63.7 2.4E+02 0.0052 31.3 17.4 123 22-173 169-299 (568)
117 PRK11138 outer membrane biogen 63.4 1E+02 0.0022 31.6 12.1 55 31-108 256-310 (394)
118 KOG0292 Vesicle coat complex C 61.5 1E+02 0.0022 36.1 12.0 78 22-117 11-91 (1202)
119 KOG0772 Uncharacterized conser 60.7 1.9E+02 0.0042 31.8 13.5 126 24-167 171-299 (641)
120 smart00284 OLF Olfactomedin-li 60.7 1.3E+02 0.0029 29.9 11.7 76 31-111 83-162 (255)
121 KOG1274 WD40 repeat protein [G 59.7 3.3E+02 0.0071 31.9 15.6 117 23-168 99-219 (933)
122 KOG1446 Histone H3 (Lys4) meth 59.5 2.1E+02 0.0047 29.3 15.2 74 13-108 95-168 (311)
123 KOG0316 Conserved WD40 repeat- 59.5 1.7E+02 0.0037 29.3 11.9 29 80-108 182-211 (307)
124 KOG1273 WD40 repeat protein [G 59.3 1.8E+02 0.0038 30.3 12.3 68 23-108 26-93 (405)
125 PTZ00421 coronin; Provisional 58.7 2.7E+02 0.0058 30.2 18.7 68 23-108 128-196 (493)
126 KOG0640 mRNA cleavage stimulat 58.4 81 0.0018 32.7 9.8 123 22-172 174-296 (430)
127 PRK01742 tolB translocation pr 57.8 2.4E+02 0.0052 29.4 16.5 74 24-116 207-288 (429)
128 KOG3567 Peptidylglycine alpha- 57.3 19 0.0004 38.8 5.3 30 79-108 465-494 (501)
129 KOG0310 Conserved WD40 repeat- 57.0 2.6E+02 0.0056 30.4 13.6 117 20-172 153-273 (487)
130 KOG0640 mRNA cleavage stimulat 56.9 1.5E+02 0.0033 30.8 11.4 79 23-116 219-300 (430)
131 KOG0318 WD40 repeat stress pro 55.5 3.3E+02 0.0071 30.2 15.9 89 83-188 323-416 (603)
132 PLN00181 protein SPA1-RELATED; 55.5 2.5E+02 0.0055 31.8 14.4 79 83-166 711-792 (793)
133 COG4247 Phy 3-phytase (myo-ino 55.3 2.3E+02 0.0051 28.8 12.2 108 79-202 151-279 (364)
134 KOG1036 Mitotic spindle checkp 54.6 2.6E+02 0.0057 28.8 14.7 145 27-211 61-209 (323)
135 PRK03629 tolB translocation pr 54.5 2.8E+02 0.006 29.1 18.6 74 24-116 202-283 (429)
136 KOG0286 G-protein beta subunit 54.0 2.7E+02 0.0058 28.7 13.2 80 22-117 231-313 (343)
137 KOG0283 WD40 repeat-containing 53.8 1.2E+02 0.0026 34.6 11.0 71 22-111 411-482 (712)
138 PRK04922 tolB translocation pr 51.5 3E+02 0.0066 28.6 17.4 24 85-108 296-322 (433)
139 KOG0303 Actin-binding protein 51.5 3.1E+02 0.0068 29.3 12.9 29 80-108 170-201 (472)
140 KOG1517 Guanine nucleotide bin 51.5 2.4E+02 0.0053 33.8 13.1 142 4-167 1093-1239(1387)
141 KOG0271 Notchless-like WD40 re 49.6 2.1E+02 0.0045 30.5 11.3 111 22-168 159-277 (480)
142 smart00108 B_lectin Bulb-type 49.3 1.2E+02 0.0026 25.6 8.3 20 83-102 87-106 (114)
143 TIGR03300 assembly_YfgL outer 48.2 2.5E+02 0.0054 28.3 11.8 21 86-108 275-295 (377)
144 KOG0973 Histone transcription 47.8 4.8E+02 0.01 30.9 14.8 67 84-168 133-202 (942)
145 PF00400 WD40: WD domain, G-be 47.5 71 0.0015 20.9 5.4 27 22-48 13-39 (39)
146 KOG0319 WD40-repeat-containing 47.3 2.1E+02 0.0046 32.6 11.6 113 26-172 25-140 (775)
147 PRK05137 tolB translocation pr 46.8 3.6E+02 0.0078 28.1 16.1 28 24-51 205-235 (435)
148 KOG2110 Uncharacterized conser 46.7 1.4E+02 0.0029 31.5 9.4 70 22-108 175-246 (391)
149 cd00028 B_lectin Bulb-type man 46.4 1.3E+02 0.0028 25.4 8.1 18 84-101 89-106 (116)
150 KOG0973 Histone transcription 45.7 93 0.002 36.4 8.8 78 22-117 131-211 (942)
151 KOG0278 Serine/threonine kinas 45.3 3.5E+02 0.0075 27.5 13.2 108 22-167 186-297 (334)
152 KOG0285 Pleiotropic regulator 45.2 1.9E+02 0.0041 30.6 10.1 110 22-168 153-266 (460)
153 TIGR02608 delta_60_rpt delta-6 43.8 39 0.00084 25.8 3.8 31 23-53 3-40 (55)
154 PRK04792 tolB translocation pr 43.7 4.2E+02 0.0091 28.0 19.0 72 25-115 266-345 (448)
155 PRK11138 outer membrane biogen 43.7 3E+02 0.0064 28.2 11.7 17 91-108 335-351 (394)
156 KOG0319 WD40-repeat-containing 42.7 1.9E+02 0.0042 32.9 10.4 112 22-167 64-179 (775)
157 TIGR02800 propeller_TolB tol-p 41.7 3.9E+02 0.0084 27.1 17.0 27 25-51 238-267 (417)
158 KOG2055 WD40 repeat protein [G 40.8 4.4E+02 0.0096 28.7 12.3 24 85-108 308-331 (514)
159 KOG0295 WD40 repeat-containing 40.7 4.7E+02 0.01 27.7 14.5 140 4-175 222-372 (406)
160 PRK04922 tolB translocation pr 40.2 4.5E+02 0.0098 27.4 16.0 65 25-108 208-278 (433)
161 KOG0293 WD40 repeat-containing 39.6 3.5E+02 0.0076 29.2 11.2 114 19-168 311-426 (519)
162 COG4946 Uncharacterized protei 36.9 6.1E+02 0.013 28.0 13.5 19 149-167 469-487 (668)
163 PF14517 Tachylectin: Tachylec 36.8 98 0.0021 30.4 6.4 70 22-108 131-204 (229)
164 PRK00178 tolB translocation pr 36.6 4.9E+02 0.011 26.8 16.3 74 24-116 202-283 (430)
165 COG1520 FOG: WD40-like repeat 36.5 4.6E+02 0.01 26.5 11.7 64 28-109 65-128 (370)
166 PF07494 Reg_prop: Two compone 36.4 40 0.00086 21.0 2.4 17 82-98 6-22 (24)
167 PF05935 Arylsulfotrans: Aryls 36.1 1.7E+02 0.0037 31.4 8.7 43 22-67 272-315 (477)
168 PRK04043 tolB translocation pr 36.0 5.4E+02 0.012 27.1 16.6 33 26-61 193-229 (419)
169 PRK03629 tolB translocation pr 35.8 5.3E+02 0.012 26.9 18.8 72 25-115 247-326 (429)
170 KOG0273 Beta-transducin family 35.3 4E+02 0.0086 29.1 10.9 73 22-113 237-311 (524)
171 KOG0278 Serine/threonine kinas 34.9 2E+02 0.0044 29.1 8.2 70 22-108 223-295 (334)
172 KOG0322 G-protein beta subunit 34.4 77 0.0017 32.1 5.3 64 84-165 255-321 (323)
173 KOG0292 Vesicle coat complex C 34.2 5.7E+02 0.012 30.3 12.5 136 10-168 198-349 (1202)
174 KOG1407 WD40 repeat protein [F 32.0 5.7E+02 0.012 26.1 13.0 72 138-212 149-243 (313)
175 PF07433 DUF1513: Protein of u 32.0 5.8E+02 0.013 26.2 16.3 79 82-172 164-252 (305)
176 KOG3881 Uncharacterized conser 31.7 5.8E+02 0.013 27.2 11.2 70 21-108 203-275 (412)
177 PF14870 PSII_BNR: Photosynthe 31.6 5.7E+02 0.012 26.0 14.1 43 7-50 90-132 (302)
178 TIGR02800 propeller_TolB tol-p 30.7 5.8E+02 0.013 25.8 18.6 65 25-108 194-264 (417)
179 PRK02889 tolB translocation pr 30.5 6.4E+02 0.014 26.3 17.6 65 25-108 200-270 (427)
180 KOG1009 Chromatin assembly com 29.9 5.7E+02 0.012 27.4 10.9 36 82-117 125-162 (434)
181 KOG0306 WD40-repeat-containing 29.9 6.2E+02 0.014 29.3 11.7 111 24-170 554-667 (888)
182 KOG2055 WD40 repeat protein [G 29.6 6.7E+02 0.015 27.4 11.5 23 145-167 395-417 (514)
183 PF02191 OLF: Olfactomedin-lik 29.4 5.6E+02 0.012 25.2 12.1 81 25-111 73-157 (250)
184 COG3823 Glutamine cyclotransfe 29.3 2.6E+02 0.0057 27.7 7.8 62 100-166 194-258 (262)
185 PRK05137 tolB translocation pr 29.2 6.7E+02 0.014 26.1 19.2 73 25-116 250-330 (435)
186 KOG0265 U5 snRNP-specific prot 28.6 6.8E+02 0.015 25.9 11.9 72 23-111 50-123 (338)
187 KOG4378 Nuclear protein COP1 [ 28.5 2.3E+02 0.005 31.2 7.9 66 84-168 212-281 (673)
188 smart00108 B_lectin Bulb-type 28.4 3.6E+02 0.0077 22.6 8.4 54 83-161 55-108 (114)
189 KOG0276 Vesicle coat complex C 27.7 9.6E+02 0.021 27.4 12.7 114 21-171 352-467 (794)
190 PF08662 eIF2A: Eukaryotic tra 27.3 5.1E+02 0.011 24.0 12.1 96 23-156 62-162 (194)
191 PRK01029 tolB translocation pr 27.0 7.5E+02 0.016 26.0 15.3 75 25-116 285-367 (428)
192 COG3490 Uncharacterized protei 27.0 7.3E+02 0.016 25.8 11.5 38 138-175 281-318 (366)
193 COG4247 Phy 3-phytase (myo-ino 27.0 4.3E+02 0.0094 26.9 9.0 44 6-50 190-234 (364)
194 KOG1407 WD40 repeat protein [F 26.7 7E+02 0.015 25.5 10.6 71 83-171 150-223 (313)
195 cd00028 B_lectin Bulb-type man 26.4 3.2E+02 0.007 23.0 7.3 23 83-105 56-78 (116)
196 PRK01742 tolB translocation pr 26.2 7.6E+02 0.016 25.7 16.2 25 84-108 295-322 (429)
197 KOG0284 Polyadenylation factor 26.2 5.3E+02 0.011 27.8 9.9 78 22-117 182-262 (464)
198 PF01453 B_lectin: D-mannose b 25.9 3.4E+02 0.0074 23.1 7.4 58 23-106 20-77 (114)
199 KOG1539 WD repeat protein [Gen 24.9 1.2E+03 0.025 27.4 13.5 112 22-171 495-610 (910)
200 PRK00178 tolB translocation pr 24.7 7.8E+02 0.017 25.3 19.1 27 25-51 247-276 (430)
201 KOG0283 WD40 repeat-containing 24.7 1E+03 0.023 27.3 12.5 120 22-168 453-577 (712)
202 KOG2919 Guanine nucleotide-bin 24.4 8.4E+02 0.018 25.6 10.8 27 22-49 160-186 (406)
203 PF02191 OLF: Olfactomedin-lik 23.9 7.1E+02 0.015 24.5 11.8 30 136-165 218-247 (250)
204 KOG0308 Conserved WD40 repeat- 23.6 8.4E+02 0.018 27.8 11.2 71 22-110 173-243 (735)
205 PTZ00486 apyrase Superfamily; 23.1 7.3E+02 0.016 26.1 10.2 32 31-63 124-155 (352)
206 KOG0282 mRNA splicing factor [ 23.0 3.6E+02 0.0077 29.4 8.1 107 31-171 226-334 (503)
207 KOG0268 Sof1-like rRNA process 22.7 1.7E+02 0.0036 31.0 5.4 66 84-165 276-343 (433)
208 KOG4378 Nuclear protein COP1 [ 22.5 3.4E+02 0.0073 30.0 7.8 66 23-108 211-278 (673)
209 PF13360 PQQ_2: PQQ-like domai 22.4 5.9E+02 0.013 23.1 16.2 118 24-171 116-234 (238)
210 TIGR03300 assembly_YfgL outer 22.3 8E+02 0.017 24.6 12.2 60 27-108 62-121 (377)
211 KOG0315 G-protein beta subunit 22.2 8.4E+02 0.018 24.8 14.7 74 84-175 219-296 (311)
212 PF14339 DUF4394: Domain of un 22.0 7.8E+02 0.017 24.4 14.7 42 15-60 21-63 (236)
213 KOG2096 WD40 repeat protein [G 21.7 2.9E+02 0.0063 28.9 6.9 76 83-168 89-164 (420)
214 KOG3914 WD repeat protein WDR4 21.4 6.7E+02 0.015 26.6 9.6 73 80-170 151-226 (390)
215 COG3292 Predicted periplasmic 21.3 7.2E+02 0.016 28.0 10.1 24 83-108 292-315 (671)
216 PRK02889 tolB translocation pr 20.8 9.6E+02 0.021 24.9 17.2 24 85-108 288-314 (427)
217 KOG0299 U3 snoRNP-associated p 20.7 1.1E+03 0.024 25.6 11.2 125 22-167 144-274 (479)
218 PF00930 DPPIV_N: Dipeptidyl p 20.6 1.7E+02 0.0037 29.7 5.2 71 85-163 56-127 (353)
219 PF15525 DUF4652: Domain of un 20.5 3.9E+02 0.0084 25.8 7.0 23 145-167 136-158 (200)
220 KOG0647 mRNA export protein (c 20.1 5.4E+02 0.012 26.7 8.3 77 23-116 30-110 (347)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.71 E-value=3.3e-16 Score=178.98 Aligned_cols=145 Identities=30% Similarity=0.454 Sum_probs=117.2
Q ss_pred CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCC------CCcccccCCcccccccCCcceEEEcCCC
Q 014345 20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSA------EGYSGHVDGKPREARMNHPKGLTVDDRG 92 (426)
Q Consensus 20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~------~G~~G~~dG~a~~A~Ln~P~GIaVd~dG 92 (426)
+..|+||+++++|. |||+|..+++|++++.++ +...+++|.. ....|..+|....+.|++|.||+++++|
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG 815 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG 815 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence 35899999999987 999999999999999874 3345555421 1123444566667889999999999999
Q ss_pred CEEEEECCCCEEEEEc-CC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345 93 NIYIADTMNMAIRKIS-DS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 170 (426)
Q Consensus 93 ~LYVADt~N~rIrk~d-~g-~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~ 170 (426)
+|||||+.|++|++++ ++ .+.+++|.. . .|..+|....+.|+.|.+|+ ++++|+|||+|++|++|++|++....
T Consensus 816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G--~-~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 816 QIYVADSYNHKIKKLDPATKRVTTLAGTG--K-AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cEEEEECCCCEEEEEECCCCeEEEEeccC--C-cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999 44 478888732 1 35567777889999999999 68899999999999999999998754
Q ss_pred e
Q 014345 171 C 171 (426)
Q Consensus 171 ~ 171 (426)
.
T Consensus 892 ~ 892 (1057)
T PLN02919 892 A 892 (1057)
T ss_pred c
Confidence 3
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=2.2e-15 Score=172.20 Aligned_cols=162 Identities=24% Similarity=0.319 Sum_probs=120.2
Q ss_pred CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345 21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD 98 (426)
Q Consensus 21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD 98 (426)
..|.+|++|+ +|+|||+|+.+|||++++.+| .....+|.. |..|..+|.+..++|+.|.||++|++|+ |||||
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G----~~i~~ig~~-g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDG----NFIVQIGST-GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCCC----CEEEEEccC-CCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 4799999997 578999999999999999985 444455542 5566678888889999999999998765 99999
Q ss_pred CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCC-CcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec
Q 014345 99 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDG-PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY 175 (426)
Q Consensus 99 t~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG-~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~ 175 (426)
+.|++|++++ .+.+++++|... .+....+| ......|+.|++|++.+.++.|||+|.++++|++++.....+....
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~-~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGT-KGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCc-ccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 9999999999 444788887421 10111222 1223458999999954348899999999999999998654432211
Q ss_pred ----------------CCCCcceEEEEec
Q 014345 176 ----------------GSSFPLGIAVLLA 188 (426)
Q Consensus 176 ----------------~~g~P~GIAv~~g 188 (426)
....|.|||+...
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspd 750 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPD 750 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCC
Confidence 1245888888754
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.39 E-value=6.4e-12 Score=140.37 Aligned_cols=165 Identities=24% Similarity=0.315 Sum_probs=115.8
Q ss_pred cCCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCC--CCcccccEEEecCCC------CcccccCCcc
Q 014345 5 ESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSS--LSLYSRPKLVAGSAE------GYSGHVDGKP 75 (426)
Q Consensus 5 ~~G~tv~tv~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~d--g~~~g~v~~vaG~~~------G~~G~~dG~a 75 (426)
.+|...+.+--+..-..+-+-||++| ||.|||+|...++|+|+..- ...-.+..++||.+. ..||+ .+.|
T Consensus 391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-GalA 469 (1899)
T KOG4659|consen 391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GALA 469 (1899)
T ss_pred CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chhc
Confidence 45544444444445556778999999 99999999999999999442 112356789999762 24664 5568
Q ss_pred cccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCC-CC-CCCC-CCcccccCCCCCeeEEECCCCeE
Q 014345 76 REARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGR-GG-GHVD-GPSEDAKFSNDFDVVYIGSSCSL 151 (426)
Q Consensus 76 ~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~-~~-G~~d-G~~~~a~f~~P~gIa~vd~~G~L 151 (426)
.+|+|..|+||+||++|+||+||. -+||++| +|.++|+.|...-. .. .+.. -...+.+|.+|++||+.+=++.|
T Consensus 470 ~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl 547 (1899)
T KOG4659|consen 470 QDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL 547 (1899)
T ss_pred ccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Confidence 899999999999999999999997 5799999 66689998843211 11 1111 13556789999999954448899
Q ss_pred EEEEC-------CCCeEEEEEcCCCceE
Q 014345 152 LVIDR-------GNRAIREIQLHFDDCA 172 (426)
Q Consensus 152 YVaDs-------gN~rIr~I~l~~~~~~ 172 (426)
||.|. -+++|+.|.-..-+|.
T Consensus 548 ~Vld~nvvlrit~~~rV~Ii~GrP~hC~ 575 (1899)
T KOG4659|consen 548 LVLDTNVVLRITVVHRVRIILGRPTHCD 575 (1899)
T ss_pred EEeecceEEEEccCccEEEEcCCccccc
Confidence 99994 2455554443334553
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.37 E-value=3.8e-11 Score=114.79 Aligned_cols=143 Identities=23% Similarity=0.278 Sum_probs=99.8
Q ss_pred EEEEEecC---CCCCCCceEEEEcCCCcEEEEECCC--------CeEEEEeCCCCcccccEEEecCCCCcccccCCcccc
Q 014345 9 TVETVFDG---SKLGIEPYSVEVLPGGELLILDSAN--------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPRE 77 (426)
Q Consensus 9 tv~tv~~g---~~l~~~P~GIaVd~dG~LYVaD~~n--------~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~ 77 (426)
.++.+... ..-...|++++++++|+|||+|... ++|++++.+ +.+..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~--------------- 131 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD--------------- 131 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE---------------
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEec---------------
Confidence 44555543 2134589999999999999999755 579999987 34444432
Q ss_pred cccCCcceEEEcCCCC-EEEEECCCCEEEEEc-C--CC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC
Q 014345 78 ARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D--SG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC 149 (426)
Q Consensus 78 A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d-~--g~-V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G 149 (426)
.|..|+||+++++|+ |||+|+.+++|++++ + +. + .+++.... ....|-+++ +|.+|
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G 195 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDG 195 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCC
Confidence 277899999999986 999999999999999 3 33 2 12221100 013588998 79999
Q ss_pred eEEEEECCCCeEEEEEcCCCceEe-ecCCCCcceEEEE
Q 014345 150 SLLVIDRGNRAIREIQLHFDDCAY-QYGSSFPLGIAVL 186 (426)
Q Consensus 150 ~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g~P~GIAv~ 186 (426)
+|||++.++++|.++++++..... ......|+.+|+.
T Consensus 196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp -EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEE
T ss_pred CEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEE
Confidence 999999999999999999754432 2233467777774
No 5
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.25 E-value=2e-11 Score=136.56 Aligned_cols=140 Identities=22% Similarity=0.389 Sum_probs=113.2
Q ss_pred CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcc-----cccCCcccccccCCcceEEEcCCCCE
Q 014345 21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS-----GHVDGKPREARMNHPKGLTVDDRGNI 94 (426)
Q Consensus 21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~-----G~~dG~a~~A~Ln~P~GIaVd~dG~L 94 (426)
..|+.+||+| ||.|||.| +|-|++++.+ +++..++|++..|. .+....+..+.|-.|..|+|..+|.|
T Consensus 533 eWPT~LaV~Pmdnsl~Vld--~nvvlrit~~----~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l 606 (1899)
T KOG4659|consen 533 EWPTSLAVDPMDNSLLVLD--TNVVLRITVV----HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL 606 (1899)
T ss_pred ecccceeecCCCCeEEEee--cceEEEEccC----ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence 4899999999 99999999 8899999998 67889999873321 11122356777888999999999999
Q ss_pred EEEECCC---CEEEEEc-CCCcEEEeCCccCCCC---------CCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345 95 YIADTMN---MAIRKIS-DSGVTTIAGGKWGRGG---------GHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI 161 (426)
Q Consensus 95 YVADt~N---~rIrk~d-~g~VstIaGg~~g~~~---------G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI 161 (426)
|||++.. +|||++. +|++..+||.+...+| ...++.+.+|+|+.|..|| |.++|.|||||.+|-||
T Consensus 607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRI 685 (1899)
T ss_pred EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhh
Confidence 9999874 5778888 7779999997553221 1224578899999999999 89999999999999999
Q ss_pred EEEEcC
Q 014345 162 REIQLH 167 (426)
Q Consensus 162 r~I~l~ 167 (426)
+++...
T Consensus 686 r~Vs~~ 691 (1899)
T KOG4659|consen 686 RKVSAR 691 (1899)
T ss_pred hhhhhc
Confidence 988754
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.21 E-value=3.8e-10 Score=107.94 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=99.9
Q ss_pred ceEEEEc-CCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 23 PYSVEVL-PGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 23 P~GIaVd-~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
|.|++++ ++|.|||++... +.+++.+. +.+..++.... ....++.|+++++|++|+|||+|...
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~--~~~~d~~~---g~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~ 106 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG--IAVVDPDT---GKVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG 106 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC--EEEEETTT---TEEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred CceEEEEccCCEEEEEEcCc--eEEEecCC---CcEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence 9999998 688899998544 44447664 45555553310 01247889999999999999999864
Q ss_pred --------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce-
Q 014345 102 --------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC- 171 (426)
Q Consensus 102 --------~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~- 171 (426)
.+|.+++ ++.+..+.. .+..|++|++..+...|||+|+.+++|++++++....
T Consensus 107 ~~~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPDGKVTVVAD-----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp BCTTCGGSEEEEEEETTSEEEEEEE-----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred CccccccccceEEECCCCeEEEEec-----------------CcccccceEECCcchheeecccccceeEEEeccccccc
Confidence 5688888 434444432 3567999996544447999999999999999974332
Q ss_pred ----E-e---ecCCCCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345 172 ----A-Y---QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ 210 (426)
Q Consensus 172 ----~-~---~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~ 210 (426)
. . ....+.|.|++++.. |.+|...-..-.+..++.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEEET
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEECC
Confidence 1 1 122246999999953 556655444444444443
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.8e-07 Score=94.20 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=91.0
Q ss_pred CCCceEEEEcCCCcEEEEECC-----------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEE
Q 014345 20 GIEPYSVEVLPGGELLILDSA-----------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV 88 (426)
Q Consensus 20 ~~~P~GIaVd~dG~LYVaD~~-----------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaV 88 (426)
.+.|+.+.++++|.+||.|.. .++|+++++.+ +..+.+.+. |..|+|||+
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~----------------~~~~NGla~ 170 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDD----------------LTIPNGLAF 170 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCc----------------EEecCceEE
Confidence 368999999999999999977 24688888764 233444322 667999999
Q ss_pred cCCC-CEEEEECCCCEEEEEc-CCCcEEEeCCccC-CCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEE
Q 014345 89 DDRG-NIYIADTMNMAIRKIS-DSGVTTIAGGKWG-RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREI 164 (426)
Q Consensus 89 d~dG-~LYVADt~N~rIrk~d-~g~VstIaGg~~g-~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rIr~I 164 (426)
++|| .+|++|+..++|.+++ +.. ....++... ....... -.|-+++ +|.+|+||++-..+ .+|.++
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~-~g~~~~~~~~~~~~~~~--------G~PDG~~-vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPA-TGPIGGRRGFVDFDEEP--------GLPDGMA-VDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcc-cCccCCcceEEEccCCC--------CCCCceE-EeCCCCEEEecccCCceEEEE
Confidence 9999 6999999999999998 421 000011000 0000011 2577887 89999999655444 599999
Q ss_pred EcCCCceEe-ecCCCCcceEEEE
Q 014345 165 QLHFDDCAY-QYGSSFPLGIAVL 186 (426)
Q Consensus 165 ~l~~~~~~~-~~~~g~P~GIAv~ 186 (426)
++++..... ......|...|+.
T Consensus 241 ~pdG~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 241 NPDGKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CCCCcEEEEEECCCCCCccceEe
Confidence 998644332 2222445555554
No 8
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.82 E-value=2.9e-07 Score=94.24 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=98.3
Q ss_pred CcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCC------------CeEEEEeCC-CC-cccccEEEecCCCCcccccC
Q 014345 7 GYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAN------------SNLYRISSS-LS-LYSRPKLVAGSAEGYSGHVD 72 (426)
Q Consensus 7 G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n------------~rI~kid~d-g~-~~g~v~~vaG~~~G~~G~~d 72 (426)
|+.++.++....+. .|.+|++|++|+|||++..+ .||++++.. +. ...+.++++..
T Consensus 1 Gf~~~l~A~~p~~~-~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--------- 70 (367)
T TIGR02604 1 GFKVTLFAAEPLLR-NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--------- 70 (367)
T ss_pred CcEEEEEECCCccC-CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC---------
Confidence 56778777664544 89999999999999998522 388888542 21 11123444422
Q ss_pred CcccccccCCcceEEEcCCCCEEEEECCCCEEEEEc--CC------CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEE
Q 014345 73 GKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS--DS------GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVY 144 (426)
Q Consensus 73 G~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d--~g------~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~ 144 (426)
|+.|+||++.++| |||++. .+|+++. ++ ...+++.+.... + ......+++++
T Consensus 71 -------l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~----~~~~~~~~~l~- 130 (367)
T TIGR02604 71 -------LSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ-----I----NNHHHSLNSLA- 130 (367)
T ss_pred -------CCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC-----C----CcccccccCce-
Confidence 7789999999988 999985 4687773 22 233444321100 0 00123578888
Q ss_pred ECCCCeEEEEECCC-------------------CeEEEEEcCCCceEe-ecCCCCcceEEEEec
Q 014345 145 IGSSCSLLVIDRGN-------------------RAIREIQLHFDDCAY-QYGSSFPLGIAVLLA 188 (426)
Q Consensus 145 vd~~G~LYVaDsgN-------------------~rIr~I~l~~~~~~~-~~~~g~P~GIAv~~g 188 (426)
++++|.|||++..+ +.|.++++++..... ..+.-.|.|++++..
T Consensus 131 ~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~ 194 (367)
T TIGR02604 131 WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSW 194 (367)
T ss_pred ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCC
Confidence 68999999988632 568888887655443 344456788888743
No 9
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.3e-06 Score=88.13 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=98.3
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC-
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN- 101 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N- 101 (426)
+.++.++..|.|++++.+-.++ .++.. +.++.++-.. ...+++.|+++.++++|.+||.|..+
T Consensus 69 ~~~~~~d~~g~Lv~~~~g~~~~-~~~~~----~~~t~~~~~~-----------~~~~~~r~ND~~v~pdG~~wfgt~~~~ 132 (307)
T COG3386 69 SSGALIDAGGRLIACEHGVRLL-DPDTG----GKITLLAEPE-----------DGLPLNRPNDGVVDPDGRIWFGDMGYF 132 (307)
T ss_pred ccceeecCCCeEEEEccccEEE-eccCC----ceeEEecccc-----------CCCCcCCCCceeEcCCCCEEEeCCCcc
Confidence 7788889888898888654322 22221 1224444321 12357899999999999999999872
Q ss_pred ----------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC-
Q 014345 102 ----------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF- 168 (426)
Q Consensus 102 ----------~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~- 168 (426)
.+|.+++ .+++..+..+ .+..|++||+ ++++ .||++|+..++|++++.+.
T Consensus 133 ~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------~~~~~NGla~-SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 133 DLGKSEERPTGSLYRVDPDGGVVRLLDD----------------DLTIPNGLAF-SPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred ccCccccCCcceEEEEcCCCCEEEeecC----------------cEEecCceEE-CCCCCEEEEEeCCCCeEEEEecCcc
Confidence 3466666 4554444321 3678999995 5555 9999999999999999872
Q ss_pred -----Cc--e-EeecCCCCcceEEEEecCCceEEEEEEEeccc-ceeeecc
Q 014345 169 -----DD--C-AYQYGSSFPLGIAVLLAAGFFGYMLALLQRRV-GTIVSSQ 210 (426)
Q Consensus 169 -----~~--~-~~~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~-g~~~~s~ 210 (426)
.. + ......|.|.|++++.. |+.|+...+.- +...++.
T Consensus 196 ~g~~~~~~~~~~~~~~~G~PDG~~vDad----G~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 196 TGPIGGRRGFVDFDEEPGLPDGMAVDAD----GNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred cCccCCcceEEEccCCCCCCCceEEeCC----CCEEEecccCCceEEEECC
Confidence 11 1 11234589999999955 66674444432 3344433
No 10
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=3.9e-06 Score=86.53 Aligned_cols=139 Identities=22% Similarity=0.368 Sum_probs=97.3
Q ss_pred CCCceEEEEcCCC-cEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345 20 GIEPYSVEVLPGG-ELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY 95 (426)
Q Consensus 20 ~~~P~GIaVd~dG-~LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY 95 (426)
+..|.+++++++| .+||++. .+++|.+++..+..... ....|. .|.+++++++|+ +|
T Consensus 115 G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-~~~vG~------------------~P~~~a~~p~g~~vy 175 (381)
T COG3391 115 GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-TIPVGN------------------TPTGVAVDPDGNKVY 175 (381)
T ss_pred ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-EEecCC------------------CcceEEECCCCCeEE
Confidence 4479999999987 6999999 57999999998532111 111111 489999999998 99
Q ss_pred EEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCC--CeEEEEEcCCCceE
Q 014345 96 IADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGN--RAIREIQLHFDDCA 172 (426)
Q Consensus 96 VADt~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN--~rIr~I~l~~~~~~ 172 (426)
|+|..+++|..++..+...+-+.. . .....+..|.+++ ++++|. +||++..+ ++|.+++.......
T Consensus 176 v~~~~~~~v~vi~~~~~~v~~~~~-~---------~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 176 VTNSDDNTVSVIDTSGNSVVRGSV-G---------SLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EEecCCCeEEEEeCCCcceecccc-c---------cccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 999999999999944432221210 0 0122467899998 677775 99999988 69999998876554
Q ss_pred ee--cCCC-CcceEEEEec
Q 014345 173 YQ--YGSS-FPLGIAVLLA 188 (426)
Q Consensus 173 ~~--~~~g-~P~GIAv~~g 188 (426)
.. .... .|.++++.-.
T Consensus 245 ~~~~~~~~~~~~~v~~~p~ 263 (381)
T COG3391 245 ATDLPVGSGAPRGVAVDPA 263 (381)
T ss_pred EeccccccCCCCceeECCC
Confidence 32 1112 5777776643
No 11
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.52 E-value=1.7e-06 Score=85.53 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=95.5
Q ss_pred CCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 20 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
+..|+.|+.++||.+|+++.+.+.|=++|+.+ |++.++. |.+ .+|.||.+++||..||+|
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~t---Gev~~ypLg~G----------------a~Phgiv~gpdg~~Witd 121 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT---GEVETYPLGSG----------------ASPHGIVVGPDGSAWITD 121 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCC---CceEEEecCCC----------------CCCceEEECCCCCeeEec
Confidence 34699999999999999999999999999985 6666664 331 269999999999999999
Q ss_pred CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--
Q 014345 99 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-- 174 (426)
Q Consensus 99 t~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~-- 174 (426)
+++ .|++++ ..++++..-.. ...++.|+. +.+|+.|+||++.. ++.--++++........
T Consensus 122 ~~~-aI~R~dpkt~evt~f~lp~----------~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 122 TGL-AIGRLDPKTLEVTRFPLPL----------EHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA 185 (353)
T ss_pred Ccc-eeEEecCcccceEEeeccc----------ccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeecc
Confidence 988 999999 34465543211 112233433 34699999999987 34444566655444332
Q ss_pred cCCCCcceEEEEec
Q 014345 175 YGSSFPLGIAVLLA 188 (426)
Q Consensus 175 ~~~g~P~GIAv~~g 188 (426)
...+.|.|||+...
T Consensus 186 PqG~gpyGi~atpd 199 (353)
T COG4257 186 PQGGGPYGICATPD 199 (353)
T ss_pred CCCCCCcceEECCC
Confidence 23456999998743
No 12
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.51 E-value=1.4e-07 Score=62.08 Aligned_cols=28 Identities=43% Similarity=0.772 Sum_probs=26.5
Q ss_pred cCCcceEEEcCCCCEEEEECCCCEEEEE
Q 014345 80 MNHPKGLTVDDRGNIYIADTMNMAIRKI 107 (426)
Q Consensus 80 Ln~P~GIaVd~dG~LYVADt~N~rIrk~ 107 (426)
|+.|.|||++++|+|||||+.|+||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999986
No 13
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.40 E-value=7.8e-06 Score=83.75 Aligned_cols=115 Identities=12% Similarity=0.200 Sum_probs=75.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEE-eCCCC--cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRI-SSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~ki-d~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
.|+||++.++| |||++ ..+|+++ +.++. ..++.++++...... +. .....++++++++||.|||++
T Consensus 73 ~p~Gi~~~~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~----~~----~~~~~~~~l~~gpDG~LYv~~ 141 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQ----IN----NHHHSLNSLAWGPDGWLYFNH 141 (367)
T ss_pred CccceeEecCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCC----CC----cccccccCceECCCCCEEEec
Confidence 79999999988 99997 4579888 44432 122444554321010 00 013458999999999999998
Q ss_pred CCC-------------------CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345 99 TMN-------------------MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 157 (426)
Q Consensus 99 t~N-------------------~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg 157 (426)
..+ +.|.+++ +++ +..++. .|..|++|+ ++++|.||++|.+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----------------G~rnp~Gl~-~d~~G~l~~tdn~ 203 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----------------GFQNPYGHS-VDSWGDVFFCDND 203 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----------------CcCCCccce-ECCCCCEEEEccC
Confidence 732 3466666 333 333332 367899999 6889999999987
Q ss_pred CCeEEEEE
Q 014345 158 NRAIREIQ 165 (426)
Q Consensus 158 N~rIr~I~ 165 (426)
++...++.
T Consensus 204 ~~~~~~i~ 211 (367)
T TIGR02604 204 DPPLCRVT 211 (367)
T ss_pred CCceeEEc
Confidence 66555554
No 14
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.5e-05 Score=82.27 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=96.2
Q ss_pred CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEE
Q 014345 21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD 98 (426)
Q Consensus 21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVAD 98 (426)
..|.|+++.++|+ +||++...++|.+|+.+.. +....+.. | ..|.+++++++| .+||+|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~~~~~v-----G-----------~~P~~~~~~~~~~~vYV~n 134 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVLGSIPV-----G-----------LGPVGLAVDPDGKYVYVAN 134 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---ceeeEeee-----c-----------cCCceEEECCCCCEEEEEe
Confidence 5799999999887 9999999999999996532 11111111 1 159999999987 799999
Q ss_pred C--CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCceEe--
Q 014345 99 T--MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDDCAY-- 173 (426)
Q Consensus 99 t--~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~~~~~~-- 173 (426)
. .|+.|.+++..+-..+.-...|. .|.+++ ++++|. +||+|..+++|..|+........
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~~~vG~---------------~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTATIPVGN---------------TPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred cccCCceEEEEeCCCCeEEEEEecCC---------------CcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 9 57999999944422221111111 578888 688886 99999999999999987765552
Q ss_pred ----ecCCCCcceEEEEec
Q 014345 174 ----QYGSSFPLGIAVLLA 188 (426)
Q Consensus 174 ----~~~~g~P~GIAv~~g 188 (426)
......|.++++...
T Consensus 199 ~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred cccccccCCCCceEEECCC
Confidence 334456888888754
No 15
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.30 E-value=5.5e-06 Score=84.90 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=95.1
Q ss_pred CceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
+|-||+++..| +|||||..- -++++++.|. ....+++.. +| ..+...+++.|+++|.||++|+.
T Consensus 116 RPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~---~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDSS 180 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYL-GLLKVGPEGG---LAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDSS 180 (376)
T ss_pred CcceEEeccCCCeEEEEecce-eeEEECCCCC---cceeccccc-------cC----eeeeecCceeEcCCCeEEEeccc
Confidence 89999999966 899999644 6889999873 345555442 22 24677899999999999999985
Q ss_pred C-----------------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 014345 101 N-----------------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR 162 (426)
Q Consensus 101 N-----------------~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr 162 (426)
. +|+.++| ...+. ...-..|..|+||++..+...+.+|++...||+
T Consensus 181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~----------------~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ 244 (376)
T KOG1520|consen 181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVT----------------KVLLDGLYFPNGLALSPDGSFVLVAETTTARIK 244 (376)
T ss_pred cccchhheEEeeecCCCccceEEecCcccch----------------hhhhhcccccccccCCCCCCEEEEEeeccceee
Confidence 3 2222333 11111 112235788999996555557899999999999
Q ss_pred EEEcCCCceEe---ec--CCCCcceEEEE
Q 014345 163 EIQLHFDDCAY---QY--GSSFPLGIAVL 186 (426)
Q Consensus 163 ~I~l~~~~~~~---~~--~~g~P~GIAv~ 186 (426)
++-+.+..... .. --|+|.+|..+
T Consensus 245 rywi~g~k~gt~EvFa~~LPG~PDNIR~~ 273 (376)
T KOG1520|consen 245 RYWIKGPKAGTSEVFAEGLPGYPDNIRRD 273 (376)
T ss_pred eeEecCCccCchhhHhhcCCCCCcceeEC
Confidence 99998866522 22 34789999998
No 16
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.29 E-value=1.9e-05 Score=78.18 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=101.5
Q ss_pred EEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc
Q 014345 10 VETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD 89 (426)
Q Consensus 10 v~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd 89 (426)
+-.++..- ++..|+|||+.+||+||++....+-|.+||+-. +-...+. .+. +.-+.-+.|-.|
T Consensus 179 ~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiaridp~~---~~aev~p-~P~------------~~~~gsRriwsd 241 (353)
T COG4257 179 VISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIARIDPFA---GHAEVVP-QPN------------ALKAGSRRIWSD 241 (353)
T ss_pred ceeeeccC-CCCCCcceEECCCCcEEEEeccccceEEccccc---CCcceec-CCC------------cccccccccccC
Confidence 33444433 566899999999999999999999999999863 2122221 110 111223568899
Q ss_pred CCCCEEEEECCCCEEEEEcCC--CcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345 90 DRGNIYIADTMNMAIRKISDS--GVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ 165 (426)
Q Consensus 90 ~dG~LYVADt~N~rIrk~d~g--~Vst--IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~ 165 (426)
+.|.+|+++.++.++.+|+.. .... +-|. =..|.++- ||..+++|.+|.+.+.|.+|+
T Consensus 242 pig~~wittwg~g~l~rfdPs~~sW~eypLPgs-----------------~arpys~r-VD~~grVW~sea~agai~rfd 303 (353)
T COG4257 242 PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-----------------KARPYSMR-VDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred ccCcEEEeccCCceeeEeCcccccceeeeCCCC-----------------CCCcceee-eccCCcEEeeccccCceeecC
Confidence 999999999999999999932 2221 2111 02577776 899999999999999999999
Q ss_pred cCCCceEeecCCC-CcceEEEEecCCceEEEEE
Q 014345 166 LHFDDCAYQYGSS-FPLGIAVLLAAGFFGYMLA 197 (426)
Q Consensus 166 l~~~~~~~~~~~g-~P~GIAv~~g~g~~Gy~~a 197 (426)
+.....+...... .+..+.++ +..|-+|.
T Consensus 304 peta~ftv~p~pr~n~gn~ql~---gr~ge~W~ 333 (353)
T COG4257 304 PETARFTVLPIPRPNSGNIQLD---GRPGELWF 333 (353)
T ss_pred cccceEEEecCCCCCCCceecc---CCCCceee
Confidence 9887766544332 23344444 23444554
No 17
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.27 E-value=3.1e-06 Score=70.69 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=51.3
Q ss_pred eEEEEcCC-CcEEEEEC-----------------CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345 24 YSVEVLPG-GELLILDS-----------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG 85 (426)
Q Consensus 24 ~GIaVd~d-G~LYVaD~-----------------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G 85 (426)
++|+|+++ |.||++|+ .++|++++++.+ ++.++++.. |..|+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~----------------L~fpNG 61 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDG----------------LYFPNG 61 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEE----------------ESSEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhC----------------CCccCe
Confidence 47899998 99999995 558999999985 456677644 888999
Q ss_pred EEEcCCCC-EEEEECCCCEEEEEc
Q 014345 86 LTVDDRGN-IYIADTMNMAIRKIS 108 (426)
Q Consensus 86 IaVd~dG~-LYVADt~N~rIrk~d 108 (426)
|++++|+. |+||+++.+||.++-
T Consensus 62 Vals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 62 VALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred EEEcCCCCEEEEEeccCceEEEEE
Confidence 99999998 999999999999875
No 18
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.25 E-value=4.2e-05 Score=77.56 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=100.3
Q ss_pred CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345 20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA 97 (426)
Q Consensus 20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA 97 (426)
...|+.+.++|||+ |||+|.+..+|+.++.+... +.+....... -.. -..|+.|+++++|+ +||+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~~-~~~-----------G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSIK-VPP-----------GSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEEE-CST-----------TSSEEEEEE-TTSSEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEeeccc-ccc-----------CCCCcEEEEcCCcCEEEEe
Confidence 45899999999987 99999999999999876422 1222211000 011 12499999999976 9999
Q ss_pred ECCCCEEEEEc-C--CC-cEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 014345 98 DTMNMAIRKIS-D--SG-VTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD 169 (426)
Q Consensus 98 Dt~N~rIrk~d-~--g~-Vst---IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~ 169 (426)
+..++.|..++ + .+ ++. +.-...+. ..-..|.+|++ +++| .|||++++.+.|..++++..
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-----------TGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESCETTS-----------CSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTT
T ss_pred cCCCCcEEEEeecccCCceeEEEEeeeccccc-----------cccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999999888 3 22 322 22111110 01147899995 5555 79999999999999998543
Q ss_pred --ceEe----ecCCCCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345 170 --DCAY----QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ 210 (426)
Q Consensus 170 --~~~~----~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~ 210 (426)
.... ..+...|.+++++... -+++..-|..-...++..
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g---~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDG---RYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTS---SEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCC---CEEEEEecCCCeEEEEEE
Confidence 2221 2233459999996442 234555555555555543
No 19
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.22 E-value=1.9e-06 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCcEEEEECCCCeEEEE
Q 014345 21 IEPYSVEVLPGGELLILDSANSNLYRI 47 (426)
Q Consensus 21 ~~P~GIaVd~dG~LYVaD~~n~rI~ki 47 (426)
..|+||+++++|+|||+|+.||||+++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 379999999999999999999999986
No 20
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.16 E-value=8.2e-05 Score=75.43 Aligned_cols=125 Identities=14% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEec---CCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345 18 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAG---SAEGYSGHVDGKPREARMNHPKGLTVDDRGN 93 (426)
Q Consensus 18 ~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG---~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~ 93 (426)
..+..|+.++++++|. +||+...++.|..++.+... +.+..+.. .+.+..+ -+.|.+|++++||+
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~----------~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTG----------ENAPAEIAISPDGR 257 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCS----------SSSEEEEEE-TTSS
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccc----------cCCceeEEEecCCC
Confidence 4456799999999986 89999999999988766211 33333221 1111111 24799999999997
Q ss_pred -EEEEECCCCEEEEEc-C---CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 014345 94 -IYIADTMNMAIRKIS-D---SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 94 -LYVADt~N~rIrk~d-~---g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~ 167 (426)
|||++.+.+.|..|+ + +.++.+.--.. .-..|.++++ +++| .|||++...+.|.+++.+
T Consensus 258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAF-SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEE-eCCCCEEEEEecCCCeEEEEEEe
Confidence 999999999998887 2 33443321100 0125999995 5555 799999999999998875
Q ss_pred C
Q 014345 168 F 168 (426)
Q Consensus 168 ~ 168 (426)
.
T Consensus 323 ~ 323 (345)
T PF10282_consen 323 P 323 (345)
T ss_dssp T
T ss_pred C
Confidence 4
No 21
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.12 E-value=0.00015 Score=72.18 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=88.4
Q ss_pred CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345 20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA 97 (426)
Q Consensus 20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA 97 (426)
+..|++++++++|. |||++...+.|..++.+.. .+.+..+.--. .......+ -.+|.+|+++++|+ |||+
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~-~~p~~~~~------~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD-MMPADFSD------TRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe-cCCCcCCC------CccceeEEECCCCCEEEEe
Confidence 45699999999987 8899988899888876521 02222221000 00000011 13567899999987 9999
Q ss_pred ECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCc--e
Q 014345 98 DTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDD--C 171 (426)
Q Consensus 98 Dt~N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~--~ 171 (426)
+...+.|..|+ +++..++.+... . -..|+++++ +++| .|||++.+++.|..++.+... .
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~---~-----------~~~p~~~~~-~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQP---T-----------ETQPRGFNI-DHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEe---c-----------cccCCceEE-CCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 98888898887 333333333100 0 026888884 5555 899999989999998875422 2
Q ss_pred Ee---ecCCCCcceEEEE
Q 014345 172 AY---QYGSSFPLGIAVL 186 (426)
Q Consensus 172 ~~---~~~~g~P~GIAv~ 186 (426)
.. ......|..|+++
T Consensus 311 ~~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 311 TELGRYAVGQGPMWVSVL 328 (330)
T ss_pred EEccccccCCCceEEEEE
Confidence 21 1123457777663
No 22
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.96 E-value=0.00036 Score=69.42 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=78.8
Q ss_pred CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345 21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD 98 (426)
Q Consensus 21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD 98 (426)
..|.+|+++++|+ ||++....++|..++.+.. +.+....... . ....|.+++++++|+ +||++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~-------~------~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQII-------E------GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCceeec-------c------CCCcccEeEeCCCCCEEEEee
Confidence 3799999999987 8899888888888866421 1111111110 0 124589999999885 88999
Q ss_pred CCCCEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 99 TMNMAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 99 t~N~rIrk~d-~g-~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
.+.+.|.+++ +. + +.......... . .=..|.++++.++...|||++...+.|..++.+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~----~-------~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTT----V-------EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceec----C-------CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9999999998 32 2 21110000000 0 012588898544344789999999999999986
No 23
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.88 E-value=0.0013 Score=69.76 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=62.8
Q ss_pred eecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC
Q 014345 3 KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH 82 (426)
Q Consensus 3 k~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~ 82 (426)
+...++++++++++.. .|.+|++.+||+|||++...++|++++..+ +....+.+.+.-.. .+....
T Consensus 15 ~~p~~f~~~~va~GL~---~Pw~maflPDG~llVtER~~G~I~~v~~~~---~~~~~~~~l~~v~~--------~~ge~G 80 (454)
T TIGR03606 15 AASENFDKKVLLSGLN---KPWALLWGPDNQLWVTERATGKILRVNPET---GEVKVVFTLPEIVN--------DAQHNG 80 (454)
T ss_pred cCCCCcEEEEEECCCC---CceEEEEcCCCeEEEEEecCCEEEEEeCCC---CceeeeecCCceec--------cCCCCc
Confidence 4577889998887655 899999999999999998789999998764 22333333321100 011345
Q ss_pred cceEEEcCC-------CCEEEEECC---------CCEEEEEc
Q 014345 83 PKGLTVDDR-------GNIYIADTM---------NMAIRKIS 108 (426)
Q Consensus 83 P~GIaVd~d-------G~LYVADt~---------N~rIrk~d 108 (426)
+.|||++++ +.|||+-+. ..+|.++.
T Consensus 81 Llglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~ 122 (454)
T TIGR03606 81 LLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT 122 (454)
T ss_pred eeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence 789999865 359998422 35777765
No 24
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.81 E-value=0.00023 Score=78.59 Aligned_cols=161 Identities=21% Similarity=0.188 Sum_probs=109.7
Q ss_pred CcEEEEEecCCCCCCCceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345 7 GYTVETVFDGSKLGIEPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG 85 (426)
Q Consensus 7 G~tv~tv~~g~~l~~~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G 85 (426)
|..-+++++ .+|. .|.|||||-.+ ++|-+|+.+.+|-+-..+|++ -+++.-. .|-+|++
T Consensus 1056 G~Ep~ti~n-~~L~-SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~t---------------dLVNPR~ 1115 (1289)
T KOG1214|consen 1056 GAEPETIVN-SGLI-SPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYT---------------DLVNPRA 1115 (1289)
T ss_pred CCCCceeec-ccCC-CccceeeeeccceeeeeccccchhheeecCCce---eeEEEee---------------cccCcce
Confidence 444455554 3333 89999999854 699999999999988888643 2222211 2788999
Q ss_pred EEEcC-CCCEEEEECC--CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345 86 LTVDD-RGNIYIADTM--NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI 161 (426)
Q Consensus 86 IaVd~-dG~LYVADt~--N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI 161 (426)
|++|+ .|+||-+|+. |=.|-..+ +|+-..|.- ...+-.|++|.+..-...|--+|.+++|+
T Consensus 1116 iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili---------------n~DigLPNGLtfdpfs~~LCWvDAGt~rl 1180 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI---------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRL 1180 (1289)
T ss_pred EEeecccCceeeccccccCCcceeeccCCccceEEe---------------ecccCCCCCceeCcccceeeEEecCCcce
Confidence 99999 6899999984 55666666 665333321 11244799999655556778899999999
Q ss_pred EEEEcCCCce-EeecCCCCcceEEEEecCCceEEEEEEEecccceeee
Q 014345 162 REIQLHFDDC-AYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVS 208 (426)
Q Consensus 162 r~I~l~~~~~-~~~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~ 208 (426)
-.+..++... ..+...-.|.+|.-+... | . ..-|+.+.+++
T Consensus 1181 eC~~p~g~gRR~i~~~LqYPF~itsy~~~-f---Y--~TDWk~n~vvs 1222 (1289)
T KOG1214|consen 1181 ECTLPDGTGRRVIQNNLQYPFSITSYADH-F---Y--HTDWKRNGVVS 1222 (1289)
T ss_pred eEecCCCCcchhhhhcccCceeeeecccc-c---e--eeccccCceEE
Confidence 9999887543 345666678888776442 1 2 23556655554
No 25
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.77 E-value=8.6e-05 Score=62.02 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=48.9
Q ss_pred ceEEEcCC-CCEEEEECC-----------------CCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeE
Q 014345 84 KGLTVDDR-GNIYIADTM-----------------NMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVV 143 (426)
Q Consensus 84 ~GIaVd~d-G~LYVADt~-----------------N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa 143 (426)
++|+|+++ |.||++|+. ++|+.++| . +.+++++.+ |..|+||+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----------------L~fpNGVa 63 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----------------LYFPNGVA 63 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----------------ESSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----------------CCccCeEE
Confidence 47999998 999999973 57999999 3 335666642 66899999
Q ss_pred EECCCCeEEEEECCCCeEEEEEcCC
Q 014345 144 YIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 144 ~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
+..+...|+|+++...||.++-+.+
T Consensus 64 ls~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 64 LSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EcCCCCEEEEEeccCceEEEEEEeC
Confidence 5444446999999999999998765
No 26
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.73 E-value=0.00027 Score=78.06 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=100.8
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEEC
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVADt 99 (426)
-|.||++|- +--||-+|...+.|.+-+.+| ++.++++.+. |.+|.|||||.. .++|-+|+
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~~---------------L~SPEGiAVDh~~Rn~ywtDS 1087 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNSG---------------LISPEGIAVDHIRRNMYWTDS 1087 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccC---CCCceeeccc---------------CCCccceeeeeccceeeeecc
Confidence 367888877 444899999889999988886 4566666542 889999999975 57999999
Q ss_pred CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC--CCCeEEEEEcCCCceE--ee
Q 014345 100 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR--GNRAIREIQLHFDDCA--YQ 174 (426)
Q Consensus 100 ~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs--gN~rIr~I~l~~~~~~--~~ 174 (426)
.+.+|-+.. +|....+.- ...|.+|.+|+...-.++||-+|+ .|-.|-..++++.... .+
T Consensus 1088 ~lD~IevA~LdG~~rkvLf---------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1088 VLDKIEVALLDGSERKVLF---------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred ccchhheeecCCceeeEEE---------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee
Confidence 999998887 776433321 124778999995555789999997 4677888888875543 45
Q ss_pred cCCCCcceEEEEe
Q 014345 175 YGSSFPLGIAVLL 187 (426)
Q Consensus 175 ~~~g~P~GIAv~~ 187 (426)
...++|.|+.++.
T Consensus 1153 ~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1153 TDIGLPNGLTFDP 1165 (1289)
T ss_pred cccCCCCCceeCc
Confidence 6778999998773
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.54 E-value=0.013 Score=55.36 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=84.3
Q ss_pred CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345 22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt 99 (426)
.|..++++++|. ||++....+.|..++..... .+..+-... .+... .-..|.+++++++|+ +|++..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~---~~~~~------~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEI---PGVHP------EAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecc---ccccc------ccCCccceEECCCCCEEEEEcC
Confidence 588899999987 55665557889999887421 111111100 00000 012588999999987 588887
Q ss_pred CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEe-ec
Q 014345 100 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAY-QY 175 (426)
Q Consensus 100 ~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~-~~ 175 (426)
.+++|.+++ ++.+...... + ..+.++++ .++| .||++....+.|.++++....+.. ..
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~~--~---------------~~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLLV--G---------------QRVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEe--C---------------CCcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 788899998 3333322210 0 13677885 5555 677777778899999998876532 23
Q ss_pred CCCCcceEEE
Q 014345 176 GSSFPLGIAV 185 (426)
Q Consensus 176 ~~g~P~GIAv 185 (426)
....|.+||+
T Consensus 289 ~~~~~~~~~~ 298 (300)
T TIGR03866 289 VGRLPWGVVV 298 (300)
T ss_pred cccccceeEe
Confidence 3356888875
No 28
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.52 E-value=0.0014 Score=67.57 Aligned_cols=100 Identities=21% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCcceEEEcCCC-CEEEEECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345 81 NHPKGLTVDDRG-NIYIADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 157 (426)
Q Consensus 81 n~P~GIaVd~dG-~LYVADt~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg 157 (426)
..|-||+++..| +|||||.+ --+.+++ .++. +.++....| ..|...+++. ++++|.||++|+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G------------~~~kf~N~ld-I~~~g~vyFTDSS 180 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG------------KPFKFLNDLD-IDPEGVVYFTDSS 180 (376)
T ss_pred CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC------------eeeeecCcee-EcCCCeEEEeccc
Confidence 469999999976 99999986 5688888 6665 334432222 2455677887 6779999999963
Q ss_pred -----------------CCeEEEEEcCCCce-EeecCCCCcceEEEEecCCceEE
Q 014345 158 -----------------NRAIREIQLHFDDC-AYQYGSSFPLGIAVLLAAGFFGY 194 (426)
Q Consensus 158 -----------------N~rIr~I~l~~~~~-~~~~~~g~P~GIAv~~g~g~~Gy 194 (426)
++|+.++|+.+... ....+..+|.|+|+.-...++.+
T Consensus 181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred cccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEE
Confidence 47777887776554 34567788999998877666544
No 29
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.42 E-value=0.0034 Score=63.69 Aligned_cols=125 Identities=19% Similarity=0.224 Sum_probs=73.9
Q ss_pred CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC----CCEEE
Q 014345 21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR----GNIYI 96 (426)
Q Consensus 21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d----G~LYV 96 (426)
..|.+|++.|||.|||++. .++|++++.++.. ...+.....-... ......||+++++ +.|||
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~~~---------~~~gllgia~~p~f~~n~~lYv 68 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSL---KTPVADLPEVFAD---------GERGLLGIAFHPDFASNGYLYV 68 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TTEEEEEETTTEE---CEEEEE-TTTBTS---------TTBSEEEEEE-TTCCCC-EEEE
T ss_pred CCceEEEEeCCCcEEEEeC-CceEEEEeCCCcC---cceeccccccccc---------ccCCcccceeccccCCCCEEEE
Confidence 3799999999999999997 9999999976432 1333332111111 1334689999984 88999
Q ss_pred EECCC--------CEEEEEc--CC--C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-----
Q 014345 97 ADTMN--------MAIRKIS--DS--G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR----- 156 (426)
Q Consensus 97 ADt~N--------~rIrk~d--~g--~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs----- 156 (426)
+-+.. .+|.++. .+ . ..+|.-+.... ....-.-..|+ ++++|.|||+--
T Consensus 69 ~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~----------~~~~H~g~~l~-fgpDG~LYvs~G~~~~~ 137 (331)
T PF07995_consen 69 YYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDT----------SSGNHNGGGLA-FGPDGKLYVSVGDGGND 137 (331)
T ss_dssp EEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTTG
T ss_pred EEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCC----------CCCCCCCcccc-CCCCCcEEEEeCCCCCc
Confidence 98732 4566655 33 1 22232211110 00111234577 689999999742
Q ss_pred --------CCCeEEEEEcCCC
Q 014345 157 --------GNRAIREIQLHFD 169 (426)
Q Consensus 157 --------gN~rIr~I~l~~~ 169 (426)
..+.|.+|++++.
T Consensus 138 ~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 138 DNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp GGGCSTTSSTTEEEEEETTSS
T ss_pred ccccccccccceEEEecccCc
Confidence 2477999998763
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.28 E-value=0.00077 Score=66.24 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=46.0
Q ss_pred CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345 21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 99 (426)
Q Consensus 21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt 99 (426)
..|.+|++++ .|+|||....+.+|+.+|.+|...+...+..|. .| ....+.+|.|||+|++|+|||+.-
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~----~g------l~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF----HG------LSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG----GG-------SS---SEEEEEE-TT--EEEEET
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc----cC------cccccCCccEEEECCCCCEEEEcC
Confidence 4799999999 689999999999999999986543333333221 11 223588999999999999999987
Q ss_pred CCCEEEEE
Q 014345 100 MNMAIRKI 107 (426)
Q Consensus 100 ~N~rIrk~ 107 (426)
-| +..+|
T Consensus 241 pN-lfy~f 247 (248)
T PF06977_consen 241 PN-LFYRF 247 (248)
T ss_dssp TT-EEEEE
T ss_pred Cc-eEEEe
Confidence 65 44443
No 31
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.026 Score=57.65 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=87.9
Q ss_pred CCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCC--cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-
Q 014345 18 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN- 93 (426)
Q Consensus 18 ~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~- 93 (426)
.-+.+|.-|++.|+|. .|+..--++.|.++..+.. .+..+.++.--+..+.|. ++-..|.++++|+
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~----------~~~aaIhis~dGrF 257 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT----------NWAAAIHISPDGRF 257 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC----------CceeEEEECCCCCE
Confidence 4456899999999998 6888888899888766642 223333443333333332 2334689999998
Q ss_pred EEEEECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345 94 IYIADTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 170 (426)
Q Consensus 94 LYVADt~N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~ 170 (426)
||++|++-+.|..|. +++...+.+-.. . .-..|.+..+.+....|+++.-..+.|.++..+...
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~L~~~~~~~-----------t--eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGKLELVGITP-----------T--EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCEEEEEEEec-----------c--CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 999999988888776 445333332100 0 112477777434444567776666667777666543
Q ss_pred eEe--e-cCCCCcceEEEE
Q 014345 171 CAY--Q-YGSSFPLGIAVL 186 (426)
Q Consensus 171 ~~~--~-~~~g~P~GIAv~ 186 (426)
... . .....|..+|+.
T Consensus 325 G~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 325 GRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred ceEEecccccCCCCcEEEE
Confidence 322 1 223345555554
No 32
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.01 E-value=0.0083 Score=64.94 Aligned_cols=81 Identities=26% Similarity=0.327 Sum_probs=53.7
Q ss_pred CCCceEEEEcC-CCcEEEEECCCC-------------------eEEEEeCCCCc----cccc--EEEecCCCCcccccCC
Q 014345 20 GIEPYSVEVLP-GGELLILDSANS-------------------NLYRISSSLSL----YSRP--KLVAGSAEGYSGHVDG 73 (426)
Q Consensus 20 ~~~P~GIaVd~-dG~LYVaD~~n~-------------------rI~kid~dg~~----~g~v--~~vaG~~~G~~G~~dG 73 (426)
...|.+|.+++ +|.|||+.+.++ .|+++...+.- ..++ .+++|.+.-......+
T Consensus 349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~ 428 (524)
T PF05787_consen 349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSN 428 (524)
T ss_pred ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccC
Confidence 35899999999 689999987666 79999877531 0122 3333432111111122
Q ss_pred cccccccCCcceEEEcCCCCEEEEECC
Q 014345 74 KPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 74 ~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
......|+.|.+|++|++|+|||+.-.
T Consensus 429 ~~~~~~f~sPDNL~~d~~G~LwI~eD~ 455 (524)
T PF05787_consen 429 KCDDNGFASPDNLAFDPDGNLWIQEDG 455 (524)
T ss_pred cccCCCcCCCCceEECCCCCEEEEeCC
Confidence 234456999999999999999988543
No 33
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.28 Score=50.27 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=114.2
Q ss_pred EEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeC--CCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345 9 TVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISS--SLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG 85 (426)
Q Consensus 9 tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~--dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G 85 (426)
..+.+..-...+..|.-|++|++|. ||+|.+..+.|.++-. +|.....+..+...+ ...+ ....-.++.-
T Consensus 77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g--~~p~-----~rQ~~~h~H~ 149 (346)
T COG2706 77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG--SGPH-----ERQESPHVHS 149 (346)
T ss_pred eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC--CCCC-----ccccCCccce
Confidence 3444444444456679999999996 7888888887766644 443311122332221 1111 1111335677
Q ss_pred EEEcCCCC-EEEEECCCCEEEEEc--CCCcEE--EeCCccCCCCCC-------------------------CC--C----
Q 014345 86 LTVDDRGN-IYIADTMNMAIRKIS--DSGVTT--IAGGKWGRGGGH-------------------------VD--G---- 129 (426)
Q Consensus 86 IaVd~dG~-LYVADt~N~rIrk~d--~g~Vst--IaGg~~g~~~G~-------------------------~d--G---- 129 (426)
.-++++|+ |+++|-+..||..++ +|.... .+--+.|.+..+ .. |
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 88889884 899999999999888 443211 111111110000 00 1
Q ss_pred ----CcccccC---CCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCce--Ee---ecCCC-CcceEEEEecCCceEEE
Q 014345 130 ----PSEDAKF---SNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDC--AY---QYGSS-FPLGIAVLLAAGFFGYM 195 (426)
Q Consensus 130 ----~~~~a~f---~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~--~~---~~~~g-~P~GIAv~~g~g~~Gy~ 195 (426)
....+.| ++-.+|. +.++| -||++|++.+.|..+..+.... .. ...-+ .|.++.+..++. +.
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~L 305 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FL 305 (346)
T ss_pred eeeeccCccccCCCCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EE
Confidence 1112224 3445566 46666 6999999999998888775433 21 22333 488888886644 47
Q ss_pred EEEEecccceeeeccCCC
Q 014345 196 LALLQRRVGTIVSSQNDH 213 (426)
Q Consensus 196 ~a~lq~~~g~~~~s~~~~ 213 (426)
.|+-|......++.....
T Consensus 306 iaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 306 IAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEccCCCcEEEEEEcCC
Confidence 888888888888877665
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.82 E-value=0.033 Score=54.80 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=44.3
Q ss_pred ccCCcceEEEcC-CCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345 79 RMNHPKGLTVDD-RGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR 156 (426)
Q Consensus 79 ~Ln~P~GIaVd~-dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs 156 (426)
.+..|.+|++++ .|.|||....+.+|..+| +|.+.....-..+. ......+..|-||| .|++|+|||+.-
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~-------~gl~~~~~QpEGIa-~d~~G~LYIvsE 240 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF-------HGLSKDIPQPEGIA-FDPDGNLYIVSE 240 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG-------GG-SS---SEEEEE-E-TT--EEEEET
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc-------cCcccccCCccEEE-ECCCCCEEEEcC
Confidence 356799999998 478999999999999999 67653222211111 01233578899999 688999999997
Q ss_pred CCCeEEEE
Q 014345 157 GNRAIREI 164 (426)
Q Consensus 157 gN~rIr~I 164 (426)
.| +..+|
T Consensus 241 pN-lfy~f 247 (248)
T PF06977_consen 241 PN-LFYRF 247 (248)
T ss_dssp TT-EEEEE
T ss_pred Cc-eEEEe
Confidence 54 66655
No 35
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.81 E-value=0.068 Score=53.48 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=37.7
Q ss_pred CeeEEECCCCeEEEEECCCCeEEEEEcCC----Cce---EeecC-CCCcceEEEEecCCceEEEEEE
Q 014345 140 FDVVYIGSSCSLLVIDRGNRAIREIQLHF----DDC---AYQYG-SSFPLGIAVLLAAGFFGYMLAL 198 (426)
Q Consensus 140 ~gIa~vd~~G~LYVaDsgN~rIr~I~l~~----~~~---~~~~~-~g~P~GIAv~~g~g~~Gy~~a~ 198 (426)
.+++ .|++|+||+++..++.|.+++..+ +.. ..... .-.|.+++++. -..|++|.+
T Consensus 189 ~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~--~~~g~L~v~ 252 (287)
T PF03022_consen 189 DGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP--EGDGYLWVL 252 (287)
T ss_dssp CEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T----TS-EEEE
T ss_pred ceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc--ccCceEEEE
Confidence 4555 788999999999999999999987 221 22233 46799999985 113566643
No 36
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.76 E-value=0.1 Score=49.26 Aligned_cols=117 Identities=15% Similarity=0.257 Sum_probs=72.6
Q ss_pred CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCEEEEEc-C
Q 014345 32 GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D 109 (426)
Q Consensus 32 G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d-~ 109 (426)
+++|++....+.|.+++.++.. .+..+.+. ..|.+++++++|. +|++...++.|++++ .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~~~~-----------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--VTRTFPVG-----------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--eEEEEECC-----------------CCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 4688888888889998876421 12222111 1367899999987 678888888999999 3
Q ss_pred -CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEeecC-CCCcceEEE
Q 014345 110 -SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQYG-SSFPLGIAV 185 (426)
Q Consensus 110 -g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~~~~-~g~P~GIAv 185 (426)
+.+. .+..+ ..+..++ +++++ .||++....++|+.+++....+..... ...|.++++
T Consensus 62 ~~~~~~~~~~~------------------~~~~~~~-~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 122 (300)
T TIGR03866 62 TGEVIGTLPSG------------------PDPELFA-LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAV 122 (300)
T ss_pred CCcEEEeccCC------------------CCccEEE-ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEE
Confidence 3332 22110 0244566 45555 578887777899999987654432222 223566666
Q ss_pred E
Q 014345 186 L 186 (426)
Q Consensus 186 ~ 186 (426)
.
T Consensus 123 ~ 123 (300)
T TIGR03866 123 S 123 (300)
T ss_pred C
Confidence 5
No 37
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.65 E-value=0.075 Score=53.86 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=78.0
Q ss_pred CCCceEEEEcCC---CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEE
Q 014345 20 GIEPYSVEVLPG---GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYI 96 (426)
Q Consensus 20 ~~~P~GIaVd~d---G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYV 96 (426)
+.-=.|+|+... ..||.+|..+++|-++|..-. .+ .+.|... | ...-+. ..|.+|... .++|||
T Consensus 137 gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~---~~-~~~g~F~------D-P~iPag-yAPFnIqni-g~~lyV 203 (336)
T TIGR03118 137 GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR---PP-PLPGSFI------D-PALPAG-YAPFNVQNL-GGTLYV 203 (336)
T ss_pred cceeeeeEEeecCCCceEEEeccCCCceEEecCccc---cc-cCCCCcc------C-CCCCCC-CCCcceEEE-CCeEEE
Confidence 334468888643 359999999999999977621 12 2233320 0 000011 136677555 478998
Q ss_pred EE-------------CCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE-----CCCCeEEEEEC
Q 014345 97 AD-------------TMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI-----GSSCSLLVIDR 156 (426)
Q Consensus 97 AD-------------t~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v-----d~~G~LYVaDs 156 (426)
+= .+.+.|-+|+ +|. +..++. ...|+.||+|+.. .-.|.|+|.+.
T Consensus 204 tYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as---------------~g~LNaPWG~a~APa~FG~~sg~lLVGNF 268 (336)
T TIGR03118 204 TYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS---------------SGRLNAPWGLAIAPESFGSLSGALLVGNF 268 (336)
T ss_pred EEEecCCcccccccCCCcceEEEEcCCCcEEEEecc---------------CCcccCCceeeeChhhhCCCCCCeEEeec
Confidence 83 3345677777 555 444543 2358999999942 23679999999
Q ss_pred CCCeEEEEEcCCC
Q 014345 157 GNRAIREIQLHFD 169 (426)
Q Consensus 157 gN~rIr~I~l~~~ 169 (426)
+.++|..+|....
T Consensus 269 GDG~InaFD~~sG 281 (336)
T TIGR03118 269 GDGTINAYDPQSG 281 (336)
T ss_pred CCceeEEecCCCC
Confidence 9999999998643
No 38
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.65 E-value=0.064 Score=52.70 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=58.4
Q ss_pred cCCcceEEEcCCC-CEEEEECCCCEEEEEc---CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 014345 80 MNHPKGLTVDDRG-NIYIADTMNMAIRKIS---DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL 151 (426)
Q Consensus 80 Ln~P~GIaVd~dG-~LYVADt~N~rIrk~d---~g~-V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~L 151 (426)
+.-|+||+.|.+- .+|+.|+.|..|..++ .++ + ..|..-....+. + =..|-|++ +|.+|+|
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~--------e--~~~PDGm~-ID~eG~L 225 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF--------E--SLEPDGMT-IDTEGNL 225 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc--------C--CCCCCcce-EccCCcE
Confidence 4558999999764 5999999999996655 222 2 223321111111 1 13588998 7999999
Q ss_pred EEEECCCCeEEEEEcCCCceEe
Q 014345 152 LVIDRGNRAIREIQLHFDDCAY 173 (426)
Q Consensus 152 YVaDsgN~rIr~I~l~~~~~~~ 173 (426)
||+-...++|.++++.......
T Consensus 226 ~Va~~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTGKILL 247 (310)
T ss_pred EEEEecCcEEEEECCCCCcEEE
Confidence 9999999999999998765543
No 39
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.47 E-value=0.15 Score=52.86 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=73.6
Q ss_pred ceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345 23 PYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT 99 (426)
Q Consensus 23 P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt 99 (426)
+.++++++||. +||+.. .+.|.+||..... .+..+. |. .|.||++++||+ +||++.
T Consensus 39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~i~~G~------------------~~~~i~~s~DG~~~~v~n~ 97 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVATIKVGG------------------NPRGIAVSPDGKYVYVANY 97 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEEEE-SS------------------EEEEEEE--TTTEEEEEEE
T ss_pred eeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEEEecCC------------------CcceEEEcCCCCEEEEEec
Confidence 45577889997 899975 6799999997532 222221 22 389999999997 889999
Q ss_pred CCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce---Ee
Q 014345 100 MNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC---AY 173 (426)
Q Consensus 100 ~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~---~~ 173 (426)
..+.+.++|..+ +.+|..+.... ++ .-+.+.+|...+.....+|+-...+.|..++...... ..
T Consensus 98 ~~~~v~v~D~~tle~v~~I~~~~~~~-----~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 98 EPGTVSVIDAETLEPVKTIPTGGMPV-----DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp ETTEEEEEETTT--EEEEEE--EE-T-----TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCceeEeccccccceeecccccccc-----cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999999999433 45554321111 00 1123345543233334455556667777777544221 12
Q ss_pred ecCCCCcceEEEEe
Q 014345 174 QYGSSFPLGIAVLL 187 (426)
Q Consensus 174 ~~~~g~P~GIAv~~ 187 (426)
.....+|.+..++.
T Consensus 168 i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 168 IKVGRFPHDGGFDP 181 (369)
T ss_dssp EE--TTEEEEEE-T
T ss_pred ecccccccccccCc
Confidence 22334577766664
No 40
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.31 E-value=0.041 Score=54.03 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=57.8
Q ss_pred CceEEEEcCCC-cEEEEECCCCeEEEEe--CCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 22 EPYSVEVLPGG-ELLILDSANSNLYRIS--SSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 22 ~P~GIaVd~dG-~LYVaD~~n~rI~kid--~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
-|+||+.|.+- .+|+.|+-|..|..++ ..++...+...+..-.... ..+ --.|.|+|+|.+|+||||-
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~-------~~e--~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-------PFE--SLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC-------CcC--CCCCCcceEccCCcEEEEE
Confidence 58999999864 4999999999995555 5554445555554321100 001 1248999999999999999
Q ss_pred CCCCEEEEEc--CCC
Q 014345 99 TMNMAIRKIS--DSG 111 (426)
Q Consensus 99 t~N~rIrk~d--~g~ 111 (426)
....+|.++| .|.
T Consensus 230 ~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGK 244 (310)
T ss_pred ecCcEEEEECCCCCc
Confidence 9999999999 454
No 41
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.28 E-value=0.17 Score=52.29 Aligned_cols=111 Identities=15% Similarity=0.130 Sum_probs=72.8
Q ss_pred CcEEEEECC----CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC-------
Q 014345 32 GELLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT------- 99 (426)
Q Consensus 32 G~LYVaD~~----n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt------- 99 (426)
..+||.|.. .++|.+||.+... .+.++.. | ..|+++ +++||+ ||||.+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~------G-----------~~P~~~-~spDg~~lyva~~~~~R~~~ 72 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDG------G-----------FLPNPV-VASDGSFFAHASTVYSRIAR 72 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCE--EEEEEEc------c-----------CCCcee-ECCCCCEEEEEecccccccc
Confidence 359999976 3899999987421 1122211 1 148887 888875 999999
Q ss_pred --CCCEEEEEcCCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEEEEcCCCceE
Q 014345 100 --MNMAIRKISDSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIREIQLHFDDCA 172 (426)
Q Consensus 100 --~N~rIrk~d~g~V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-N~rIr~I~l~~~~~~ 172 (426)
..+.|.++|.... ..|.-+.. ........|..+++ .++| .|||++.. .+.|-+||+......
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~~----------p~~~~~~~~~~~~l-s~dgk~l~V~n~~p~~~V~VvD~~~~kvv 141 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPEG----------PRFLVGTYPWMTSL-TPDNKTLLFYQFSPSPAVGVVDLEGKAFV 141 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCCC----------chhhccCccceEEE-CCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence 7899999994332 23321110 01112456778884 5565 79999966 899999999876554
Q ss_pred e
Q 014345 173 Y 173 (426)
Q Consensus 173 ~ 173 (426)
.
T Consensus 142 ~ 142 (352)
T TIGR02658 142 R 142 (352)
T ss_pred E
Confidence 3
No 42
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.20 E-value=0.029 Score=57.02 Aligned_cols=121 Identities=28% Similarity=0.462 Sum_probs=69.3
Q ss_pred CceEEEEcCC-CcEEEEECCCC---eEEEEeCCCCcccccEEEecCCCCcccc------c-CCc-ccccc---cCCcceE
Q 014345 22 EPYSVEVLPG-GELLILDSANS---NLYRISSSLSLYSRPKLVAGSAEGYSGH------V-DGK-PREAR---MNHPKGL 86 (426)
Q Consensus 22 ~P~GIaVd~d-G~LYVaD~~n~---rI~kid~dg~~~g~v~~vaG~~~G~~G~------~-dG~-a~~A~---Ln~P~GI 86 (426)
+|.++++++. |+||++|.+.. .|.++.. |..+|=.....+.. ..|. . .+. ..... =..|.|+
T Consensus 182 N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~ 258 (331)
T PF07995_consen 182 NPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPK--YSGPPIGDAPSCPGFVPPVFAYPPHSAPTGI 258 (331)
T ss_dssp EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCS--TTSS-ECTGSS-TTS---SEEETTT--EEEE
T ss_pred ccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCC--CCCCccccccCCCCcCccceeecCccccCce
Confidence 7999999997 99999996553 4555543 22212111111110 0000 0 000 00001 1468898
Q ss_pred EEcC-------CCCEEEEECCCCEEEEEc-C-CC-c---EEEeCCccCCCCCCCCCCcccccCC-CCCeeEEECCCCeEE
Q 014345 87 TVDD-------RGNIYIADTMNMAIRKIS-D-SG-V---TTIAGGKWGRGGGHVDGPSEDAKFS-NDFDVVYIGSSCSLL 152 (426)
Q Consensus 87 aVd~-------dG~LYVADt~N~rIrk~d-~-g~-V---stIaGg~~g~~~G~~dG~~~~a~f~-~P~gIa~vd~~G~LY 152 (426)
++-. .|.++|+|....+|+.+. + ++ + ..+++ .+. .|.+|+ .+++|.||
T Consensus 259 ~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~~~~r~~~v~-~~pDG~Ly 320 (331)
T PF07995_consen 259 IFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG-----------------GFGGRPRDVA-QGPDGALY 320 (331)
T ss_dssp EEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT-----------------TSSS-EEEEE-EETTSEEE
T ss_pred EEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc-----------------cCCCCceEEE-EcCCCeEE
Confidence 8873 467999999999999888 3 32 2 22221 122 688998 78999999
Q ss_pred EEECCCCeEEE
Q 014345 153 VIDRGNRAIRE 163 (426)
Q Consensus 153 VaDsgN~rIr~ 163 (426)
|+|-.+++|+|
T Consensus 321 v~~d~~G~iyR 331 (331)
T PF07995_consen 321 VSDDSDGKIYR 331 (331)
T ss_dssp EEE-TTTTEEE
T ss_pred EEECCCCeEeC
Confidence 99988898875
No 43
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.98 E-value=0.21 Score=50.66 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=74.0
Q ss_pred CceEEEEcCCCcEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-E
Q 014345 22 EPYSVEVLPGGELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I 94 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n------~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-L 94 (426)
.+.||++.++|.+||++-.. ++|++++.+|.....+.+-..-.....+. .+... =....|||+.++|. |
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~-~~~~~---N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT-SGRRN---NRGFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc-ccccC---CCCeEEEEECCCCCEE
Confidence 78899998899999999999 99999999864321111101000000000 00000 11357999999998 8
Q ss_pred EEEECC---------------CCEEEEEcCC--C--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 014345 95 YIADTM---------------NMAIRKISDS--G--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID 155 (426)
Q Consensus 95 YVADt~---------------N~rIrk~d~g--~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD 155 (426)
|++--. ..||..++.. + +...+-... .......-..+.++++ -+++.|+|.+
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld--------~~~~~~~~~~isd~~a-l~d~~lLvLE 232 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD--------PPPTAPGDNGISDIAA-LPDGRLLVLE 232 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCC--------ccccccCCCCceeEEE-ECCCcEEEEE
Confidence 877422 1456666621 2 211111000 0000002345778885 4567899999
Q ss_pred CC-------CCeEEEEEcC
Q 014345 156 RG-------NRAIREIQLH 167 (426)
Q Consensus 156 sg-------N~rIr~I~l~ 167 (426)
+. ..+|+++++.
T Consensus 233 R~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 233 RDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred ccCCCCccceEEEEEEEcc
Confidence 87 3456666654
No 44
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.69 E-value=0.47 Score=49.08 Aligned_cols=68 Identities=9% Similarity=0.094 Sum_probs=46.6
Q ss_pred EEEcCCC-CEEEEE-C--------CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eE
Q 014345 86 LTVDDRG-NIYIAD-T--------MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SL 151 (426)
Q Consensus 86 IaVd~dG-~LYVAD-t--------~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~L 151 (426)
++++++| .+||+. . ..+.|.++| .+. +.++.-+ ..|++|++..+.. .|
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVSQDAKPLL 314 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEECCCCCeEE
Confidence 9999875 599953 2 236899999 333 3444321 1588999544344 68
Q ss_pred EEEECCCCeEEEEEcCCCce
Q 014345 152 LVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 152 YVaDsgN~rIr~I~l~~~~~ 171 (426)
|+++..++.|.+||......
T Consensus 315 yvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEeCCCCCcEEEEECcCCeE
Confidence 88998899999999876443
No 45
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.35 E-value=1.1 Score=45.75 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=81.9
Q ss_pred CCCceEEEEcCCCcEEEEECCCCeEEEEeCC-----CCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCE
Q 014345 20 GIEPYSVEVLPGGELLILDSANSNLYRISSS-----LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI 94 (426)
Q Consensus 20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~d-----g~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~L 94 (426)
+.+|+||++.|.|-+||+|.+.+....++.+ +.. . .+++..+ ...+. +.-..|+|+.+......
T Consensus 22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~-~L~vtiP-~~~~~-------~~~~~PTGiVfN~~~~F 90 (336)
T TIGR03118 22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--D-PLVVVIP-APPPL-------AAEGTPTGQVFNGSDTF 90 (336)
T ss_pred ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCc--c-ceEEEec-CCCCC-------CCCCCccEEEEeCCCce
Confidence 3489999999999999999999999988877 322 1 2222211 00110 01224888888865444
Q ss_pred EEEECCC---CEEEEEc-CCCcEEEeCCccCC----CCC-CCCCCcccccCCCCCeeEEEC--CCCeEEEEECCCCeEEE
Q 014345 95 YIADTMN---MAIRKIS-DSGVTTIAGGKWGR----GGG-HVDGPSEDAKFSNDFDVVYIG--SSCSLLVIDRGNRAIRE 163 (426)
Q Consensus 95 YVADt~N---~rIrk~d-~g~VstIaGg~~g~----~~G-~~dG~~~~a~f~~P~gIa~vd--~~G~LYVaDsgN~rIr~ 163 (426)
-|+.... .+..... +|+++-......-. ..- .+.+. ..+-+ .++|+.. ..+.||.+|..+++|.+
T Consensus 91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavY---kGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVY---KGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-Cccee---eeeEEeecCCCceEEEeccCCCceEE
Confidence 3443221 1111111 44443333210000 000 00000 00111 3455321 24689999999999999
Q ss_pred EEcCCCceEeec--------CCCCcceEEEEecCCceEE
Q 014345 164 IQLHFDDCAYQY--------GSSFPLGIAVLLAAGFFGY 194 (426)
Q Consensus 164 I~l~~~~~~~~~--------~~g~P~GIAv~~g~g~~Gy 194 (426)
++.......... ..-.|.+|..+.+..++-|
T Consensus 167 Fd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtY 205 (336)
T TIGR03118 167 FKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTY 205 (336)
T ss_pred ecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEE
Confidence 987654433221 1124677877655444444
No 46
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.15 E-value=0.15 Score=42.41 Aligned_cols=29 Identities=14% Similarity=0.443 Sum_probs=26.2
Q ss_pred cCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 014345 80 MNHPKGLTVDDRGN-IYIADTMNMAIRKIS 108 (426)
Q Consensus 80 Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d 108 (426)
|..|+||+++++++ ||||+...+.|+++.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 88899999999765 999999999999876
No 47
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.04 E-value=0.5 Score=50.06 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=80.7
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-.++++.++|.+.++-+....|+.++.... .-.++++.|. .+.-+.+++.++|+++++=...
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~D 267 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSDD 267 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCC----------------CCceEEEEecCCCCEEEEecCC
Confidence 4678999999998888888888888888311 0234555554 2234789999999999998889
Q ss_pred CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345 102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 170 (426)
Q Consensus 102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~ 170 (426)
+.|+.++ . +. +.++.+-.. .-.+++ +..+++++++-...+.|+.++.....
T Consensus 268 ~tvriWd~~~~~~~~~l~~hs~-----------------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKGHSD-----------------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CcEEEEeccCCeEEEeeeccCC-----------------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence 9999999 3 33 345544211 123455 57777777777778888888888766
No 48
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.96 E-value=0.086 Score=37.67 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=32.7
Q ss_pred CcEEEEECCCC-eEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC
Q 014345 32 GELLILDSANS-NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD 90 (426)
Q Consensus 32 G~LYVaD~~n~-rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~ 90 (426)
|.||-+|...+ .|.+.+.+|+ ..++++.. .+.+|.|||||.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~---------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS---NRRTVISD---------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST---SEEEEEES---------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC---CeEEEEEC---------------CCCCcCEEEECC
Confidence 57999999999 9999999974 34555533 188999999984
No 49
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.88 E-value=0.098 Score=52.72 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=51.4
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
.-.|+.+++ .|+|+|.....++++.++.+|...+.+.+..|. .| .....-++.|||+|++|+|||+---
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~----~g------L~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGN----HG------LSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCC----CC------CcccCCCcceeEECCCCCEEEEecC
Confidence 345777876 678999988999999999997654455554443 22 1223667899999999999998764
Q ss_pred C
Q 014345 101 N 101 (426)
Q Consensus 101 N 101 (426)
|
T Consensus 304 n 304 (316)
T COG3204 304 N 304 (316)
T ss_pred C
Confidence 4
No 50
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=94.78 E-value=0.62 Score=49.02 Aligned_cols=132 Identities=19% Similarity=0.279 Sum_probs=75.7
Q ss_pred CceEEEEcC-CCcEEEEECCCCeE-----EEEeCCCCcccccEEEecCC-CCcccccCCccccccc----------CCcc
Q 014345 22 EPYSVEVLP-GGELLILDSANSNL-----YRISSSLSLYSRPKLVAGSA-EGYSGHVDGKPREARM----------NHPK 84 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI-----~kid~dg~~~g~v~~vaG~~-~G~~G~~dG~a~~A~L----------n~P~ 84 (426)
+|.|++.++ +|.||++|.+...+ +-.-..|..+|=+....|.- .+.... ++. ..+.+ --|.
T Consensus 240 N~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~-~~~-~~~~~~~p~~~~~~h~Aps 317 (399)
T COG2133 240 NPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIP-DGT-VVAGAIQPVYTWAPHIAPS 317 (399)
T ss_pred CccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccC-CCc-ccccccCCceeeccccccc
Confidence 799999999 59999999766333 11112333333333333321 111000 111 11111 2368
Q ss_pred eEEEcCC-------CCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345 85 GLTVDDR-------GNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR 156 (426)
Q Consensus 85 GIaVd~d-------G~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs 156 (426)
||+|-.. +.++|+--+.-.+...+ ++....+..+... + +. --+|.+|+ +.++|.|||+|-
T Consensus 318 GmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~---~--d~------~gR~~dV~-v~~DGallv~~D 385 (399)
T COG2133 318 GMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLS---G--DL------GGRPRDVA-VAPDGALLVLTD 385 (399)
T ss_pred eeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEe---c--CC------CCcccceE-ECCCCeEEEeec
Confidence 9999843 68999987766566666 5553222221000 0 00 03789998 899999999887
Q ss_pred C-CCeEEEEEcC
Q 014345 157 G-NRAIREIQLH 167 (426)
Q Consensus 157 g-N~rIr~I~l~ 167 (426)
. +++|.++...
T Consensus 386 ~~~g~i~Rv~~~ 397 (399)
T COG2133 386 QGDGRILRVSYA 397 (399)
T ss_pred CCCCeEEEecCC
Confidence 6 7799999764
No 51
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.69 E-value=0.11 Score=51.98 Aligned_cols=64 Identities=16% Similarity=0.323 Sum_probs=48.0
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCccc-ccEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCEEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYS-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIAD 98 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g-~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~LYVAD 98 (426)
.-.|+++|++|+||+++..++.|.++++++.+.. ...+++-.. ..|..|.++.++. +|.|||.-
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence 3579999999999999999999999999853311 345555321 1288999999999 99999986
No 52
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.35 E-value=1.5 Score=45.47 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=71.5
Q ss_pred CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE-E
Q 014345 21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA-D 98 (426)
Q Consensus 21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA-D 98 (426)
..|.|+++++||. |||+....+.|..+|..+- ..+..+... +..+ ++ .-..+.+|...+....||. -
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~~I~~~--~~~~--~~-----~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVKTIPTG--GMPV--DG-----PESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE----EE-T--TT-----S---EEEEEE-SSSSEEEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccc--cceeecccc--cccc--cc-----cCCCceeEEecCCCCEEEEEE
Confidence 4699999999998 8889989999999997641 123333211 1111 00 1122456766676665554 4
Q ss_pred CCCCEEEEEc--CCC-c--EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCceE
Q 014345 99 TMNMAIRKIS--DSG-V--TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 99 t~N~rIrk~d--~g~-V--stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~~~~~ 172 (426)
.....|+.+| +.. . .++.-+ ..|++.. ++++++ ++++-...+.|..++.......
T Consensus 147 kd~~~I~vVdy~d~~~~~~~~i~~g------------------~~~~D~~-~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 147 KDTGEIWVVDYSDPKNLKVTTIKVG------------------RFPHDGG-FDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp TTTTEEEEEETTTSSCEEEEEEE--------------------TTEEEEE-E-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred ccCCeEEEEEeccccccceeeeccc------------------ccccccc-cCcccceeeecccccceeEEEeeccceEE
Confidence 5568899888 222 1 222111 2578887 577774 6777777889999998775544
Q ss_pred e
Q 014345 173 Y 173 (426)
Q Consensus 173 ~ 173 (426)
.
T Consensus 208 ~ 208 (369)
T PF02239_consen 208 A 208 (369)
T ss_dssp E
T ss_pred E
Confidence 3
No 53
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.29 E-value=0.34 Score=51.79 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=52.8
Q ss_pred cCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE------CCCCeE
Q 014345 80 MNHPKGLTVDDRGNIYIADTMNMAIRKISD-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI------GSSCSL 151 (426)
Q Consensus 80 Ln~P~GIaVd~dG~LYVADt~N~rIrk~d~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v------d~~G~L 151 (426)
|.+|++|++.++|+|||+....++|++++. ++ ...+.+...-. .......+.+|++. ..++.|
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~---------~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV---------NDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee---------ccCCCCceeeEEECCCccccCCCcEE
Confidence 889999999999999999987789999983 33 33333321100 00113456788853 234579
Q ss_pred EEEEC---------CCCeEEEEEcCC
Q 014345 152 LVIDR---------GNRAIREIQLHF 168 (426)
Q Consensus 152 YVaDs---------gN~rIr~I~l~~ 168 (426)
||+-+ ...+|.++.+..
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~ 125 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDK 125 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecC
Confidence 99842 146888888753
No 54
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.98 E-value=1.2 Score=45.65 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=83.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-+.|++ .++.+|++.+.=+++-.++..-++.-..+. .+.+ .. ....=.|-+|+|+....--||+-.+.
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkP-----pFIs----~l-a~eDRCHLNGlA~~~g~p~yVTa~~~ 172 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKP-----PFIS----KL-APEDRCHLNGMALDDGEPRYVTALSQ 172 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECCCCccccccCC-----cccc----cc-CccCceeecceeeeCCeEEEEEEeec
Confidence 4688888 577899999888899898887554222111 0111 11 01113567899998544477764321
Q ss_pred C---EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCceEee
Q 014345 102 M---AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDCAYQ 174 (426)
Q Consensus 102 ~---rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~-~~~~~~~ 174 (426)
. .=++-. +|+ +.-+..+ ......|+.|++-.+ -+|.|||+|++.+.|.+++++ +......
T Consensus 173 sD~~~gWR~~~~~gG~vidv~s~-----------evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va 239 (335)
T TIGR03032 173 SDVADGWREGRRDGGCVIDIPSG-----------EVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVA 239 (335)
T ss_pred cCCcccccccccCCeEEEEeCCC-----------CEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEE
Confidence 1 111111 233 2222211 112234778888886 359999999999999999987 4333334
Q ss_pred cCCCCcceEEEE
Q 014345 175 YGSSFPLGIAVL 186 (426)
Q Consensus 175 ~~~g~P~GIAv~ 186 (426)
.-.|+|.|++..
T Consensus 240 ~vpG~~rGL~f~ 251 (335)
T TIGR03032 240 FLPGFTRGLAFA 251 (335)
T ss_pred ECCCCCccccee
Confidence 444678888877
No 55
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.36 E-value=6.9 Score=39.09 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=79.3
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345 4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP 83 (426)
Q Consensus 4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P 83 (426)
++.|.....+.-...++ -.||++- ++.||..-..++..+++|.+. + ..+..+. +.| .-
T Consensus 75 ~~tg~~~~~~~l~~~~F--gEGit~~-~d~l~qLTWk~~~~f~yd~~t-l-~~~~~~~-----y~~------------EG 132 (264)
T PF05096_consen 75 LETGKVLQSVPLPPRYF--GEGITIL-GDKLYQLTWKEGTGFVYDPNT-L-KKIGTFP-----YPG------------EG 132 (264)
T ss_dssp TTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTT-T-EEEEEEE------SS------------S-
T ss_pred CCCCcEEEEEECCcccc--ceeEEEE-CCEEEEEEecCCeEEEEcccc-c-eEEEEEe-----cCC------------cc
Confidence 34455444443333333 5899997 468999999999999999973 1 1222221 111 24
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 160 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r 160 (426)
+|||.|. ..||++|. ..+|+.+|... +.++.-...+. ....-+.|-++ +|.||---+..++
T Consensus 133 WGLt~dg-~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~------------pv~~LNELE~i--~G~IyANVW~td~ 196 (264)
T PF05096_consen 133 WGLTSDG-KRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGR------------PVSNLNELEYI--NGKIYANVWQTDR 196 (264)
T ss_dssp -EEEECS-SCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTE------------E---EEEEEEE--TTEEEEEETTSSE
T ss_pred eEEEcCC-CEEEEECC-ccceEEECCcccceEEEEEEEECCE------------ECCCcEeEEEE--cCEEEEEeCCCCe
Confidence 8999774 47999997 68999999433 23332211111 12344667776 5899999999999
Q ss_pred EEEEEcCCCceEe
Q 014345 161 IREIQLHFDDCAY 173 (426)
Q Consensus 161 Ir~I~l~~~~~~~ 173 (426)
|.+|++..+.+.-
T Consensus 197 I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 197 IVRIDPETGKVVG 209 (264)
T ss_dssp EEEEETTT-BEEE
T ss_pred EEEEeCCCCeEEE
Confidence 9999999877643
No 56
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.32 E-value=1.9 Score=43.61 Aligned_cols=95 Identities=21% Similarity=0.365 Sum_probs=53.0
Q ss_pred ecCCCCCCCceEEEEcC-CCcEE-EEECCC----CeEEEEeCCCC--cccccEEEecCCCCcccccCCcccccccCCcce
Q 014345 14 FDGSKLGIEPYSVEVLP-GGELL-ILDSAN----SNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG 85 (426)
Q Consensus 14 ~~g~~l~~~P~GIaVd~-dG~LY-VaD~~n----~rI~kid~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G 85 (426)
+++..++ .-.||+.++ +|.+| |+|.+. .+++.+..+.. ..+.+.. .+.. -.. ..+|......---+.|
T Consensus 14 ~~~~~~G-GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~L~-~~~G~~~~~~~~D~Eg 89 (326)
T PF13449_consen 14 FDGIPFG-GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-LDMI-PLR-DPDGQPFPKNGLDPEG 89 (326)
T ss_pred cCCCccC-cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-ccce-ecc-CCCCCcCCcCCCChhH
Confidence 4455555 568999995 45543 445433 23665554421 1111111 1110 000 1122221111227889
Q ss_pred EEEcCCCCEEEEECCC------CEEEEEc-CCCc
Q 014345 86 LTVDDRGNIYIADTMN------MAIRKIS-DSGV 112 (426)
Q Consensus 86 IaVd~dG~LYVADt~N------~rIrk~d-~g~V 112 (426)
|++.++|.+||++-+. .+|++++ +|.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~ 123 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV 123 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc
Confidence 9998899999999999 9999999 6654
No 57
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=93.31 E-value=0.41 Score=52.07 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=50.7
Q ss_pred CCceEEEEcC-CCcEEEEECCCC----------------eEEEEeCCCC----cccccEEEe--cCCCCcccccCCcccc
Q 014345 21 IEPYSVEVLP-GGELLILDSANS----------------NLYRISSSLS----LYSRPKLVA--GSAEGYSGHVDGKPRE 77 (426)
Q Consensus 21 ~~P~GIaVd~-dG~LYVaD~~n~----------------rI~kid~dg~----~~g~v~~va--G~~~G~~G~~dG~a~~ 77 (426)
.+|.+|++.+ .|++|++.+.|+ +|+|+-+.+. ...++.+++ |.+.-..+........
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 4899999998 688999988665 5778766531 112333333 4331111100011122
Q ss_pred cccCCcceEEEcCCCCEEEEECC
Q 014345 78 ARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 78 A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
.-|+.|.+|+||+.|+|||+--+
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred ccccCCCceEECCCCCEEEEecC
Confidence 45999999999999999998643
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.14 E-value=1.3 Score=49.02 Aligned_cols=82 Identities=9% Similarity=0.110 Sum_probs=54.2
Q ss_pred CCcceEEEcCCCC-EEEEECCCCEEEEEcCCCcE-EEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEEECC
Q 014345 81 NHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVT-TIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVIDRG 157 (426)
Q Consensus 81 n~P~GIaVd~dG~-LYVADt~N~rIrk~d~g~Vs-tIaGg~~g~~~G~~dG~~~~a~f-~~P~gIa~vd~~G~LYVaDsg 157 (426)
..|+||++++||. +||+......|.+||-.... .+++...- .+-...+..+ ..|...+ +|.+|+.|++=.-
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~-----~~~vvaevevGlGPLHTa-FDg~G~aytslf~ 394 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP-----RDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL 394 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc-----cceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence 5799999999997 88888888899999933321 12111000 0000000001 3688888 4888999998888
Q ss_pred CCeEEEEEcCC
Q 014345 158 NRAIREIQLHF 168 (426)
Q Consensus 158 N~rIr~I~l~~ 168 (426)
...|.++++..
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 88999999765
No 59
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.13 E-value=0.31 Score=40.57 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.6
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeC
Q 014345 4 FESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISS 49 (426)
Q Consensus 4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~ 49 (426)
+-+|..+..+.++.. .|+||++++++. |||++...+.|.++..
T Consensus 40 yyd~~~~~~va~g~~---~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 40 YYDGKEVKVVASGFS---FANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred EEeCCEeEEeeccCC---CCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 345667777777655 899999999765 9999999999988764
No 60
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=3.4 Score=41.96 Aligned_cols=30 Identities=23% Similarity=0.556 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCcEEEEECCCCeEEEEeCC
Q 014345 21 IEPYSVEVLPGGELLILDSANSNLYRISSS 50 (426)
Q Consensus 21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~d 50 (426)
..|.+|+.-.+|.+.++|-...+++++..+
T Consensus 129 ~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 129 SDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred CChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 389999999888888999888888777554
No 61
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.98 E-value=2 Score=42.83 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=70.8
Q ss_pred CceEEEEcCCCcEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345 22 EPYSVEVLPGGELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt 99 (426)
.-.|+.+..+|.||.+-- +.++|++++.++ |++....--+...+ -.||++-. +.||.--.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~~~~~l~~~~F--------------gEGit~~~-d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVLQSVPLPPRYF--------------GEGITILG-DKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEEEEEE-TTT----------------EEEEEEET-TEEEEEES
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEEEEEECCcccc--------------ceeEEEEC-CEEEEEEe
Confidence 347999977899999875 445899999985 33322221111122 36899984 48999999
Q ss_pred CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345 100 MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 100 ~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
.++...++|......+.--... ..-|||+ . +...||++| |+.+|+.+++..
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---------------~EGWGLt-~-dg~~Li~SD-GS~~L~~~dP~~ 158 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---------------GEGWGLT-S-DGKRLIMSD-GSSRLYFLDPET 158 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---------------SS--EEE-E-CSSCEEEE--SSSEEEEE-TTT
T ss_pred cCCeEEEEccccceEEEEEecC---------------CcceEEE-c-CCCEEEEEC-CccceEEECCcc
Confidence 9999999996554333210000 1348888 3 356899999 478999999875
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.75 E-value=4.6 Score=42.79 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=83.7
Q ss_pred CcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceE
Q 014345 7 GYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL 86 (426)
Q Consensus 7 G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GI 86 (426)
+..+.++. |... ..+++++.++|+++++-...+.|+.++..+.. ....+.+.. ++ -.++
T Consensus 236 ~~~~~~l~-gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs-------~~---------is~~ 294 (456)
T KOG0266|consen 236 GRNLKTLK-GHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHS-------DG---------ISGL 294 (456)
T ss_pred CeEEEEec-CCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccC-------Cc---------eEEE
Confidence 44445444 4332 46999999999999999899999999887421 223333321 11 3678
Q ss_pred EEcCCCCEEEEECCCCEEEEEc-CCCc----EEEeCCccCCCCCCCCCCcccccCCCC-CeeEEECCCCeEEEEECCCCe
Q 014345 87 TVDDRGNIYIADTMNMAIRKIS-DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSND-FDVVYIGSSCSLLVIDRGNRA 160 (426)
Q Consensus 87 aVd~dG~LYVADt~N~rIrk~d-~g~V----stIaGg~~g~~~G~~dG~~~~a~f~~P-~gIa~vd~~G~LYVaDsgN~r 160 (426)
++.++|+++++-..++.|+++| ..+. .++.+... -. | ..+. ..+++..+++-..++.
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~---------------~~-~~~~~~-fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN---------------SA-PVTSVQ-FSPNGKYLLSASLDRT 357 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC---------------CC-ceeEEE-ECCCCcEEEEecCCCe
Confidence 9999999888888899999999 3333 23322110 01 2 3344 6788887777777888
Q ss_pred EEEEEcCCCce
Q 014345 161 IREIQLHFDDC 171 (426)
Q Consensus 161 Ir~I~l~~~~~ 171 (426)
|+.+++....+
T Consensus 358 ~~~w~l~~~~~ 368 (456)
T KOG0266|consen 358 LKLWDLRSGKS 368 (456)
T ss_pred EEEEEccCCcc
Confidence 88888775544
No 63
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=92.73 E-value=0.26 Score=33.74 Aligned_cols=30 Identities=17% Similarity=-0.042 Sum_probs=27.0
Q ss_pred CceEEEEcCC-CcEEEEECCCCeEEEEeCCC
Q 014345 22 EPYSVEVLPG-GELLILDSANSNLYRISSSL 51 (426)
Q Consensus 22 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg 51 (426)
.|.|+|+|+. +.||.+|...+.|.+.+.+|
T Consensus 10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 7999999995 56999999999999999885
No 64
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=92.72 E-value=0.53 Score=51.15 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=51.6
Q ss_pred cccCCcceEEEcC-CCCEEEEECCCC-------------------EEEEEc-CCC--------cEE-EeCCccCCCCCCC
Q 014345 78 ARMNHPKGLTVDD-RGNIYIADTMNM-------------------AIRKIS-DSG--------VTT-IAGGKWGRGGGHV 127 (426)
Q Consensus 78 A~Ln~P~GIaVd~-dG~LYVADt~N~-------------------rIrk~d-~g~--------Vst-IaGg~~g~~~G~~ 127 (426)
..|+.|.||++++ +|.||||-+.|. +|.+++ .+. +.. +.++.........
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4699999999998 589999988766 677777 221 222 2222111000111
Q ss_pred CCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 014345 128 DGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN 158 (426)
Q Consensus 128 dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN 158 (426)
........|+.|-.|+ ++++|+|||+.-++
T Consensus 427 ~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLA-FDPDGNLWIQEDGG 456 (524)
T ss_pred cCcccCCCcCCCCceE-ECCCCCEEEEeCCC
Confidence 2233456799999999 68899999976433
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.52 E-value=5 Score=36.06 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=62.3
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
....+++.++|+.+++-..++.|..++.... ....... ++ -.....+++++++.++++...+
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~------~~---------~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLR------GH---------ENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchh------hc---------CCceEEEEEcCCCcEEEEEcCC
Confidence 4567888887754443334777888777531 1111110 00 1245789999988888887777
Q ss_pred CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345 102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164 (426)
Q Consensus 102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I 164 (426)
+.|+.++ . +. +..+.+. -.....++ +.+++.++++-..++.|+.+
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGH-----------------TNSVTSLA-WSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CcEEEEEcCCceeEEEcccc-----------------CCcEEEEE-ECCCCCEEEEecCCCeEEec
Confidence 8898888 3 33 2333210 01345666 46666666666666777654
No 66
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.49 E-value=13 Score=37.49 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=62.4
Q ss_pred ccCCcceEEEcCCCCEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE---CCCCeEEE
Q 014345 79 RMNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI---GSSCSLLV 153 (426)
Q Consensus 79 ~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v---d~~G~LYV 153 (426)
.+-|.++|..+.+|++.|+-+..+.|.+|+ +|.|.=..||+.+..+. . .+..|.+-++..++ +.++.|-|
T Consensus 142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~----~-~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFT----L-PATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCccc----c-cCCcEeeccCCEEeccCCCCCEEEE
Confidence 467888999999999999999999999999 55566556654221111 1 44567777777765 35677777
Q ss_pred EEC----------CCCeEEEEEcCCCceEe
Q 014345 154 IDR----------GNRAIREIQLHFDDCAY 173 (426)
Q Consensus 154 aDs----------gN~rIr~I~l~~~~~~~ 173 (426)
.|- ..++|..|+.....+..
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~ 246 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTL 246 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEE
Confidence 775 34667777776554443
No 67
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=92.27 E-value=1.4 Score=50.53 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=96.0
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt 99 (426)
.|.++++|- .+++|.+|..+..|.+.+.++.. ..+++... +..|..+++++ .|.+|.+|.
T Consensus 481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~~---------------l~~~r~~~v~p~~g~~~wtd~ 542 (877)
T KOG1215|consen 481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSKD---------------LDLPRSIAVDPEKGLMFWTDW 542 (877)
T ss_pred ccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEecC---------------CCCccceeeccccCeeEEecC
Confidence 699999998 67899999999999999877532 34444431 46799999998 588999999
Q ss_pred C-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC-eEEEEEcCCCceE--e
Q 014345 100 M-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR-AIREIQLHFDDCA--Y 173 (426)
Q Consensus 100 ~-N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~-rIr~I~l~~~~~~--~ 173 (426)
+ ..+|.+-. ++. ..++... .+.+|+++++.-....+|-+|.... .|..++.++.... .
T Consensus 543 ~~~~~i~ra~~dg~~~~~l~~~----------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~ 606 (877)
T KOG1215|consen 543 GQPPRIERASLDGSERAVLVTN----------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVD 606 (877)
T ss_pred CCCchhhhhcCCCCCceEEEeC----------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEec
Confidence 7 34566555 444 3333221 1458999997666789999998887 7888888876553 2
Q ss_pred ecCCCCcceEEEEec
Q 014345 174 QYGSSFPLGIAVLLA 188 (426)
Q Consensus 174 ~~~~g~P~GIAv~~g 188 (426)
......|.++++.-.
T Consensus 607 ~~~~~~p~~~~~~~~ 621 (877)
T KOG1215|consen 607 SEDLPHPFGLSVFED 621 (877)
T ss_pred cccCCCceEEEEecc
Confidence 344456778877644
No 68
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=91.54 E-value=0.59 Score=31.87 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=29.7
Q ss_pred cCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345 135 KFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD 169 (426)
Q Consensus 135 ~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~ 169 (426)
.+..|.+|++....+.||.+|...+.|.+.+.++.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 46689999976667789999999999999998764
No 69
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=6.7 Score=39.89 Aligned_cols=118 Identities=13% Similarity=0.055 Sum_probs=70.6
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
+--+|.||.|-|+++-.++..|..+|...- ...+.... ...+ .....=++|-+.++|...+.-+.++
T Consensus 143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~-dkgPF~tf-------~i~~-----~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSELIKLYDLRSF-DKGPFTTF-------SITD-----NDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred CcceeECCCCcEEEEecCCCeEEEEEeccc-CCCCceeE-------ccCC-----CCccceeeeEEcCCCCEEEEEeCCC
Confidence 344566777766666655556665555310 00000000 0000 1123346899999999777777788
Q ss_pred EEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345 103 AIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 103 rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
.|..+| +|.+ .++.+-.. ....|-+-+ ..+++..+++-.++++|.+++++.
T Consensus 210 ~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 210 FIYLLDAFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred cEEEEEccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCC
Confidence 899999 7774 45544211 122344444 578899999988999999999864
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.93 E-value=11 Score=33.68 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=65.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
...++++.+++.++++...++.|..++.... .....+.+. -.....+++++++.++++-..+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGH----------------TDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccC----------------CCcEEEEEEcCcCCEEEEEcCC
Confidence 4667777777777777766777888777521 011111110 1235788999888877777667
Q ss_pred CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 014345 102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD 169 (426)
Q Consensus 102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~ 169 (426)
+.|+.++ . +. +..+... -.....++ ..+++ .|+++.. ++.|+.++....
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~~ 209 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGH-----------------TGEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLSTG 209 (289)
T ss_pred CcEEEEEccccccceeEecC-----------------ccccceEE-ECCCcCEEEEecC-CCcEEEEECCCC
Confidence 8888888 2 33 2333211 01235566 45555 4555554 778888887653
No 71
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.70 E-value=3 Score=43.71 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=50.0
Q ss_pred CCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEec-CCCCcccccCCcccccccCCcceEEEc--C--
Q 014345 17 SKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAG-SAEGYSGHVDGKPREARMNHPKGLTVD--D-- 90 (426)
Q Consensus 17 ~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG-~~~G~~G~~dG~a~~A~Ln~P~GIaVd--~-- 90 (426)
..+...|.|+++|. .|.|||++ .+.-|++++.+.........++- .+.+. ..-..||++- .
T Consensus 204 f~~~sQ~EGCVVDDe~g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l------------~aDvEGlaly~~~~g 270 (381)
T PF02333_consen 204 FKVGSQPEGCVVDDETGRLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGL------------VADVEGLALYYGSDG 270 (381)
T ss_dssp EE-SS-EEEEEEETTTTEEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EEEEEEEE-CCC
T ss_pred ecCCCcceEEEEecccCCEEEec-CccEEEEEecCCCCCCcceeeeccccccc------------ccCccceEEEecCCC
Confidence 33445899999987 68899999 56799999887332112233321 11111 1235788884 2
Q ss_pred CCCEEEEECCCCEEEEEc
Q 014345 91 RGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 91 dG~LYVADt~N~rIrk~d 108 (426)
.|-|+|++-+++...+++
T Consensus 271 ~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 271 KGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp -EEEEEEEGGGTEEEEEE
T ss_pred CeEEEEEcCCCCeEEEEe
Confidence 356999999999999998
No 72
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.99 E-value=8.8 Score=38.74 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=76.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc----CCCCEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGNIYIA 97 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd----~dG~LYVA 97 (426)
..+.|..+.+|+++|+-...+.|++|+... |.+.+..|...+ ++.. .....|..-+...+- .++.|-|-
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t---G~I~W~lgG~~~--~df~--~~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPST---GKIIWRLGGKRN--SDFT--LPATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCC---CcEEEEeCCCCC--Cccc--ccCCcEeeccCCEEeccCCCCCEEEEE
Confidence 567888889999999999999999999764 667776654311 1101 123345555555554 55666666
Q ss_pred EC----------CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345 98 DT----------MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ 165 (426)
Q Consensus 98 Dt----------~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~ 165 (426)
|- ...+|..++ ... ++.+..-. ....+. .+.... . +-.-++|+++|+....++|..++
T Consensus 218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~------~s~~~G--~-~Q~L~nGn~li~~g~~g~~~E~~ 287 (299)
T PF14269_consen 218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGF------YSPSQG--S-AQRLPNGNVLIGWGNNGRISEFT 287 (299)
T ss_pred cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCcc------cccCCC--c-ceECCCCCEEEecCCCceEEEEC
Confidence 64 345677777 322 33222110 000000 000111 1 11236799999999999999999
Q ss_pred cCCC
Q 014345 166 LHFD 169 (426)
Q Consensus 166 l~~~ 169 (426)
.++.
T Consensus 288 ~~G~ 291 (299)
T PF14269_consen 288 PDGE 291 (299)
T ss_pred CCCC
Confidence 8764
No 73
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=89.63 E-value=1.6 Score=31.15 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=31.8
Q ss_pred CeEEEEECCCC-eEEEEEcCCCceEe--ecCCCCcceEEEE
Q 014345 149 CSLLVIDRGNR-AIREIQLHFDDCAY--QYGSSFPLGIAVL 186 (426)
Q Consensus 149 G~LYVaDsgN~-rIr~I~l~~~~~~~--~~~~g~P~GIAv~ 186 (426)
+.||-+|...+ .|.+.++++..... ......|.|||++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 57999999999 99999999877543 4556789999987
No 74
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.47 E-value=9.6 Score=43.04 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=79.0
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-..+++.|||.+.++-...++|.+++...++ +++--.+..+| -+++.+..+|+..++-+..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts~-------------Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTSG-------------VTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCCc-------------eEEEEEEecCCEEEEeecC
Confidence 56789999999999999999999999887433 12211111122 3689999999999999999
Q ss_pred CEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCCc
Q 014345 102 MAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFDD 170 (426)
Q Consensus 102 ~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-gN~rIr~I~l~~~~ 170 (426)
++||.+| ... ..|+.... ..+| .+|+ +|+.|.|.++-. .+-.|.+++...+.
T Consensus 414 GtVRAwDlkRYrNfRTft~P~-------------p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPE-------------PIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred CeEEeeeecccceeeeecCCC-------------ceee---eEEE-EcCCCCEEEeeccceEEEEEEEeecCe
Confidence 9999999 332 55654421 1233 4566 788888877654 45677777766543
No 75
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.92 E-value=2.1 Score=47.44 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=53.9
Q ss_pred CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcc---cc---cEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345 20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY---SR---PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG 92 (426)
Q Consensus 20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~---g~---v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG 92 (426)
+.+|+||+++|||. +||+.-..+.|.+||...-.. ++ -.++++... -| ..|.-.++|.+|
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vG-----------lGPLHTaFDg~G 386 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LG-----------LGPLHTAFDGRG 386 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cC-----------CCcceEEECCCC
Confidence 45899999999998 888887788899998863110 00 012222210 01 148899999999
Q ss_pred CEEEEECCCCEEEEEc
Q 014345 93 NIYIADTMNMAIRKIS 108 (426)
Q Consensus 93 ~LYVADt~N~rIrk~d 108 (426)
+.|++=.-...|.+++
T Consensus 387 ~aytslf~dsqv~kwn 402 (635)
T PRK02888 387 NAYTTLFLDSQIVKWN 402 (635)
T ss_pred CEEEeEeecceeEEEe
Confidence 9999887788899998
No 76
>PTZ00421 coronin; Provisional
Probab=88.87 E-value=32 Score=37.22 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=70.6
Q ss_pred ceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcc-c----ccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEE
Q 014345 23 PYSVEVLP-GGELLILDSANSNLYRISSSLSLY-S----RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIY 95 (426)
Q Consensus 23 P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~-g----~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LY 95 (426)
-.+|++++ +++++++-+..+.|..++...... . .+..+.| + -..-..|++.+++ +++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVL 141 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEE
Confidence 46889988 788888777888888887653110 0 0111111 1 1123568888865 677
Q ss_pred EEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 96 IADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 96 VADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
++-..++.|+.+| .+. +.++.+.. ..-.+|+ +.++|.++++-..++.|+.+++....+
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla-~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLE-WNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEE-EECCCCEEEEecCCCEEEEEECCCCcE
Confidence 7767788899998 333 23332210 0134566 456777777777788888888775444
No 77
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.28 E-value=29 Score=35.40 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=73.2
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
.-.+|++.| +++.||+-........+|.... .-+.++.|.. . --+.|++.|+|.-|++-+.
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghe----s------------DINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHE----S------------DINSVRFFPSGDAFATGSD 249 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccc----c------------ccceEEEccCCCeeeecCC
Confidence 467788888 8999998876666666666421 1233343321 1 1467899999999999888
Q ss_pred CCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345 101 NMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL 166 (426)
Q Consensus 101 N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l 166 (426)
+...|.+| +..+.+..... ....-+.++ +...|+|+++-..+..+.+.+.
T Consensus 250 D~tcRlyDlRaD~~~a~ys~~~---------------~~~gitSv~-FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 250 DATCRLYDLRADQELAVYSHDS---------------IICGITSVA-FSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred CceeEEEeecCCcEEeeeccCc---------------ccCCceeEE-EcccccEEEeeecCCceeEeec
Confidence 88999998 22344443211 112235667 5778999998777777777774
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=88.04 E-value=26 Score=37.42 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=79.2
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345 4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP 83 (426)
Q Consensus 4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P 83 (426)
+.+|+....+.+. .....-+.+++.|||.|+.+-..++.|..++.... ..++ .+.|..| + -
T Consensus 332 ~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a-~Fpght~----~--------v 392 (506)
T KOG0289|consen 332 ISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVA-KFPGHTG----P--------V 392 (506)
T ss_pred ccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-----cccc-cCCCCCC----c--------e
Confidence 4567777666664 22234678899999999999999999988888631 1222 1112222 1 3
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc--CC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKIS--DS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 160 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d--~g-~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r 160 (426)
..|.|..+|.-.++.+....|+.+| +- .+.++.-. .+..-..+. +|..|..+++-...-+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~----------------~~~~v~s~~-fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD----------------EKKEVNSLS-FDQSGTYLGIAGSDLQ 455 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc----------------ccccceeEE-EcCCCCeEEeecceeE
Confidence 5689998888777766666688888 22 25555431 011234555 5777766666644444
Q ss_pred EEEEEcCCCce
Q 014345 161 IREIQLHFDDC 171 (426)
Q Consensus 161 Ir~I~l~~~~~ 171 (426)
|+.+.......
T Consensus 456 Vy~~~k~~k~W 466 (506)
T KOG0289|consen 456 VYICKKKTKSW 466 (506)
T ss_pred EEEEecccccc
Confidence 55554333333
No 79
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=87.90 E-value=1 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=21.2
Q ss_pred ecCCCCCCCceEEEEcCCCcEEEEECCCC
Q 014345 14 FDGSKLGIEPYSVEVLPGGELLILDSANS 42 (426)
Q Consensus 14 ~~g~~l~~~P~GIaVd~dG~LYVaD~~n~ 42 (426)
+.+..-...+.+|++|++|++||+-..++
T Consensus 6 lG~~~~~~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 6 LGGPGAQDYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eCCCCCceeEEEEEECCCCCEEEEEeecC
Confidence 33333334699999999999999976543
No 80
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=87.90 E-value=3.6 Score=42.70 Aligned_cols=125 Identities=17% Similarity=0.201 Sum_probs=76.3
Q ss_pred EEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCC---------Cc--ccccCCcccccccCCcceEE-------
Q 014345 26 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE---------GY--SGHVDGKPREARMNHPKGLT------- 87 (426)
Q Consensus 26 IaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~---------G~--~G~~dG~a~~A~Ln~P~GIa------- 87 (426)
++++-+..++|+.+....|+++|-+.+. -+.++++..+ |+ .-+.|-.+.-..+..|..++
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG 318 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG 318 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhh
Confidence 4455566688888888888888877432 1122222110 10 11123333334455555432
Q ss_pred -------EcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345 88 -------VDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 157 (426)
Q Consensus 88 -------Vd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg 157 (426)
||=+..++|+-++...|+.++ .+. |.++.|- -.|||+.--.|.|.|+.+.
T Consensus 319 HrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH--------------------kRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 319 HRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH--------------------KRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred hhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc--------------------cccceehhccCeEEEecCC
Confidence 223446777878888888887 344 5666652 2456777778999999999
Q ss_pred CCeEEEEEcCCCceE
Q 014345 158 NRAIREIQLHFDDCA 172 (426)
Q Consensus 158 N~rIr~I~l~~~~~~ 172 (426)
.+.||.++.+.+.|.
T Consensus 379 DntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 379 DNTIRLWDIECGACL 393 (499)
T ss_pred CceEEEEeccccHHH
Confidence 999999998876653
No 81
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=87.46 E-value=5.9 Score=43.49 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=49.6
Q ss_pred ccccCCcceEEEcCC-CCEEEEECCCC----------------EEEEEc--CC-------C--cEEEeCCccCCCCCCCC
Q 014345 77 EARMNHPKGLTVDDR-GNIYIADTMNM----------------AIRKIS--DS-------G--VTTIAGGKWGRGGGHVD 128 (426)
Q Consensus 77 ~A~Ln~P~GIaVd~d-G~LYVADt~N~----------------rIrk~d--~g-------~--VstIaGg~~g~~~G~~d 128 (426)
...+..|.+|++.+. |.+|++.+.|. .|.++- .+ + +...+|.......+. .
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~ 491 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-S 491 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-c
Confidence 346899999999984 78999999776 233332 11 2 233344322111111 1
Q ss_pred CCcccccCCCCCeeEEECCCCeEEEEECCC
Q 014345 129 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGN 158 (426)
Q Consensus 129 G~~~~a~f~~P~gIa~vd~~G~LYVaDsgN 158 (426)
..-....|+.|-+|+ +|+.|+|||+.-++
T Consensus 492 ~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~ 520 (616)
T COG3211 492 ANINANWFNSPDNLA-FDPWGRLWIQTDGS 520 (616)
T ss_pred cCcccccccCCCceE-ECCCCCEEEEecCC
Confidence 122225699999999 79999999976443
No 82
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=86.24 E-value=2.7 Score=44.92 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=81.1
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC-
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM- 100 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~- 100 (426)
-|+|..+|.+|+.+++|..-|.+.++.+.. ..+.+..|.. ...|. ..+.|..|..++|..+|-|+|+|..
T Consensus 169 vhyg~t~df~~~~d~TgV~mH~t~kp~pkl---a~~~L~l~~~-tvp~~-----~~~~f~~~tsc~v~~n~~ihvfa~r~ 239 (501)
T KOG3567|consen 169 VHYGLTIDFDGNYDVTGVGMHQTEKPQPKL---AKTMLLLGDG-TVPGE-----GTKHFETPTSCAVEENGPIHVFAYRC 239 (501)
T ss_pred eccccccCCCCCcccccceeeeeccCCchh---hceEEeecCC-ccCCC-----CccccCCCceEEEecCcceeeEEeee
Confidence 599999999999999999999999988873 4445554432 11221 2345888999999999999999976
Q ss_pred CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcC
Q 014345 101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaDsgN~rIr~I~l~ 167 (426)
|-+|.+.. +|-...-.........|. ..|+-..++.+- ..+-|+|.+|.+++++-..
T Consensus 240 hTh~Lgk~vsG~lv~q~~~g~w~~ig~----------r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 240 HTHILGKVVSGYLVAQKHEGHWTLIGR----------RDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eehhhcceeeeeEeeeccCcceeeccc----------cCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 44555555 333211111000000111 123333333343 3788999999999999765
No 83
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.69 E-value=3.2 Score=28.32 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCceEe-ecCCCCcceEEE
Q 014345 147 SSCSLLVIDRGNRAIREIQLHFDDCAY-QYGSSFPLGIAV 185 (426)
Q Consensus 147 ~~G~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g~P~GIAv 185 (426)
+.+.|||++++.+.|.+|++....... ......|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 356799999999999999986544322 222345777664
No 84
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=85.28 E-value=3.8 Score=43.24 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=50.7
Q ss_pred CceEEEEcC-C------CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCE
Q 014345 22 EPYSVEVLP-G------GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI 94 (426)
Q Consensus 22 ~P~GIaVd~-d------G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~L 94 (426)
-|.|+++-. + |.|+|+....-.+.+.+.++. .+++.... ..+. . -..|.+|++.+||.|
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~----~~~~~~~f--l~~d--~------~gR~~dV~v~~DGal 380 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGN----YKVVLTGF--LSGD--L------GGRPRDVAVAPDGAL 380 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCC----cceEEEEE--EecC--C------CCcccceEECCCCeE
Confidence 468999863 3 689999877767888877753 23332211 1110 0 136999999999999
Q ss_pred EEEECC-CCEEEEEc
Q 014345 95 YIADTM-NMAIRKIS 108 (426)
Q Consensus 95 YVADt~-N~rIrk~d 108 (426)
||+|-. |.+|.++.
T Consensus 381 lv~~D~~~g~i~Rv~ 395 (399)
T COG2133 381 LVLTDQGDGRILRVS 395 (399)
T ss_pred EEeecCCCCeEEEec
Confidence 999877 77999987
No 85
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=85.11 E-value=19 Score=38.02 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=81.9
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
--++++.|+|..+++.++...++.+|.++.. -..+.-|. -+.-..|+..|||..+.+-..++
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH----------------~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGH----------------KNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCC----------------ccEEEEEEECCCcchhhccccCC
Confidence 3477888999999999999899889888531 12233222 23456789999999999999999
Q ss_pred EEEEEc--CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee
Q 014345 103 AIRKIS--DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ 174 (426)
Q Consensus 103 rIrk~d--~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~ 174 (426)
.|+.+| .|+ ..++.|-+.+- .+.-..|..+ ++.++++.+-+..+.|++.+.....|.+.
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~I----------t~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~~ 242 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWI----------TALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVRT 242 (480)
T ss_pred eEEEecCCCCCcccccccCcccce----------eEEeeccccc---CCCccceecccCCCCEEEEEccCceEEEE
Confidence 999999 444 24454421110 0111234443 35677778888888888888887777654
No 86
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.38 E-value=58 Score=34.30 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=65.4
Q ss_pred ccCCcceEEEcC---CCCEEE-EECCCCEEEEEc-----CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC
Q 014345 79 RMNHPKGLTVDD---RGNIYI-ADTMNMAIRKIS-----DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC 149 (426)
Q Consensus 79 ~Ln~P~GIaVd~---dG~LYV-ADt~N~rIrk~d-----~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G 149 (426)
.+..|.|+|+-. +|.+|+ ....++.+..+. ++.+....-.. +. .-+.+-++++.|..+
T Consensus 154 ~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~----f~---------~~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE----FK---------VGSQPEGCVVDDETG 220 (381)
T ss_dssp SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE----EE----------SS-EEEEEEETTTT
T ss_pred ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE----ec---------CCCcceEEEEecccC
Confidence 366789999852 466553 233356666543 22232111000 00 012567777778889
Q ss_pred eEEEEECCCCeEEEEEcCCCce---Eee---cCC---CCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345 150 SLLVIDRGNRAIREIQLHFDDC---AYQ---YGS---SFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ 210 (426)
Q Consensus 150 ~LYVaDsgN~rIr~I~l~~~~~---~~~---~~~---g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~ 210 (426)
.|||++- +.-|+++..+.+.. ... .+. .-.-||++..+..--||.++.-|..-.-.+...
T Consensus 221 ~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 221 RLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred CEEEecC-ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 9999997 57999999874322 111 111 124588888776667999988886544444443
No 87
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=84.09 E-value=12 Score=42.93 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=93.3
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt 99 (426)
....+.++. ++.+|-+|.....|.+...++... .. +.+. ....|.|+++|- .+++|.+|.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~--~~-~~~~---------------g~~~~~~lavD~~~~~~y~tDe 499 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSE--CE-LCGD---------------GLCIPEGLAVDWIGDNIYWTDE 499 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCcc--ce-Eecc---------------CccccCcEEEEeccCCceeccc
Confidence 344445544 456888898888888887775331 11 2222 256689999997 568999999
Q ss_pred CCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEe--e
Q 014345 100 MNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAY--Q 174 (426)
Q Consensus 100 ~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg-N~rIr~I~l~~~~~~~--~ 174 (426)
.+..|.+.+ ++.. .+++.. .+..|..+++....|.+|.+|++ ..+|.+-.+++..... .
T Consensus 500 ~~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~ 563 (877)
T KOG1215|consen 500 GNCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT 563 (877)
T ss_pred CCceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe
Confidence 999999988 6553 444432 12467888866668899999998 5578888888765543 3
Q ss_pred cCCCCcceEEEEecCC
Q 014345 175 YGSSFPLGIAVLLAAG 190 (426)
Q Consensus 175 ~~~g~P~GIAv~~g~g 190 (426)
.+...|.|++++....
T Consensus 564 ~~~~~p~glt~d~~~~ 579 (877)
T KOG1215|consen 564 NGILWPNGLTIDYETD 579 (877)
T ss_pred CCccCCCcceEEeecc
Confidence 3357799999885543
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=83.73 E-value=10 Score=42.74 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=76.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
--++++|||+-.+.++-....+|+.|+...+. ..+++.|+. ++ +|. +--|..|+.|...++...+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK--q~k~FKgs~----~~-eG~--------lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK--QVKSFKGSR----DH-EGD--------LIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccc--eeeeecccc----cC-CCc--------eEEEEECCCccEEEEeecC
Confidence 36899999977776666666778888776432 345665542 22 343 5668888887666666667
Q ss_pred CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
..+-++| .|. +.+..|-.. .-+|+. +.+++.=+|+-++.++|.++.+.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE-----------------~VTG~k-F~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSE-----------------AVTGVK-FLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhcCcch-----------------heeeee-ecccchhheeecCCceEEEEECc
Confidence 7788888 666 566555211 135666 46788888888999999988864
No 89
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=83.61 E-value=54 Score=35.91 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=64.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-.+++.+..++|+.+.. ...+++++..++ ++..+.- ...=.+|.|+|+.++|.+.|.-..
T Consensus 365 qI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~-------------~~t~~~~----~~lg~QP~~lav~~d~~~avv~~~- 425 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGW-DDTLRVISLKDN-------------GYTKSEV----VKLGSQPKGLAVLSDGGTAVVACI- 425 (603)
T ss_pred eEEEEeecCCCcEEEEec-CCeEEEEecccC-------------cccccce----eecCCCceeEEEcCCCCEEEEEec-
Confidence 455677766667766653 345666655422 1111100 001246999999999865544432
Q ss_pred CEEEEEcC-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345 102 MAIRKISD-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 170 (426)
Q Consensus 102 ~rIrk~d~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~ 170 (426)
..|..+.+ ++++++--+ ..|.++| +.++++....--..+.|+.+.+.+..
T Consensus 426 ~~iv~l~~~~~~~~~~~~------------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIG------------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred CcEEEEecCCcceeeccc------------------cccceEE-EcCCCCEEEEecccceEEEEEecCCc
Confidence 34666664 345554311 1467777 67778777766667778888887743
No 90
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=83.33 E-value=1.2 Score=31.33 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=17.8
Q ss_pred CCcceEEEcCCCCEEEEECCC
Q 014345 81 NHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 81 n~P~GIaVd~dG~LYVADt~N 101 (426)
..+++|++|++|+|||+=..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 358999999999999997654
No 91
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=82.41 E-value=15 Score=35.96 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=59.1
Q ss_pred eEEEEcCCCcEEEEECCCCeEEEEeCCCCc----cc-ccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 24 YSVEVLPGGELLILDSANSNLYRISSSLSL----YS-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~----~g-~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
..|++++.|-||.++. ++.++|....... .. ..+.+.+. -.+...-|.++++|.||+.+
T Consensus 84 ~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~---------------GW~~f~~vfa~~~GvLY~i~ 147 (229)
T PF14517_consen 84 KFIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGT---------------GWNDFDAVFAGPNGVLYAIT 147 (229)
T ss_dssp SEEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-S---------------SGGGEEEEEE-TTS-EEEEE
T ss_pred eEEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecccC---------------CCccceEEEeCCCccEEEEc
Confidence 3899999999998885 6788887654221 11 12222222 14446779999999999999
Q ss_pred CCCCEEEEEc--CCC------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345 99 TMNMAIRKIS--DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 170 (426)
Q Consensus 99 t~N~rIrk~d--~g~------VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~ 170 (426)
.. +++.+.. +++ .+++.++. .+..+..|. ..++|+||-+|+ ++.|.+-......
T Consensus 148 ~d-g~~~~~~~p~~~~~~W~~~s~~v~~~---------------gw~~~~~i~-~~~~g~L~~V~~-~G~lyr~~~p~~~ 209 (229)
T PF14517_consen 148 PD-GRLYRRYRPDGGSDRWLSGSGLVGGG---------------GWDSFHFIF-FSPDGNLWAVKS-NGKLYRGRPPQNG 209 (229)
T ss_dssp TT-E-EEEE---SSTT--HHHH-EEEESS---------------SGGGEEEEE-E-TTS-EEEE-E-TTEEEEES---ST
T ss_pred CC-CceEEeCCCCCCCCccccccceeccC---------------CcccceEEe-eCCCCcEEEEec-CCEEeccCCcccC
Confidence 64 4666663 221 23333211 122355666 688999999965 7888877655433
Q ss_pred e
Q 014345 171 C 171 (426)
Q Consensus 171 ~ 171 (426)
|
T Consensus 210 ~ 210 (229)
T PF14517_consen 210 C 210 (229)
T ss_dssp T
T ss_pred C
Confidence 3
No 92
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=82.34 E-value=25 Score=40.50 Aligned_cols=127 Identities=17% Similarity=0.248 Sum_probs=67.7
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCc--------cccc---------EEEecCCC-------CcccccCCcccc
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSL--------YSRP---------KLVAGSAE-------GYSGHVDGKPRE 77 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~--------~g~v---------~~vaG~~~-------G~~G~~dG~a~~ 77 (426)
+-+.|++|++|+.+++-..++.|++++..... .|.. ..+.|+.+ ...|..++ .-
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~--iL 92 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT--IL 92 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc--ee
Confidence 35789999999854444457778877554220 1111 11111111 01111111 23
Q ss_pred cccCCcc-eEEEcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEE
Q 014345 78 ARMNHPK-GLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLV 153 (426)
Q Consensus 78 A~Ln~P~-GIaVd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYV 153 (426)
++|..|- .++|+.+|+..++-...-.|..++ +.. ..++-|-. ++ -.+|. .+++++++.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~---------ap--------Vl~l~-~~p~~~fLA 154 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD---------AP--------VLQLS-YDPKGNFLA 154 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC---------Cc--------eeeee-EcCCCCEEE
Confidence 4566665 788998999888877777777776 444 44444421 11 12344 355555555
Q ss_pred EECCCCeEEEEEcCC
Q 014345 154 IDRGNRAIREIQLHF 168 (426)
Q Consensus 154 aDsgN~rIr~I~l~~ 168 (426)
+-..++.|+++++..
T Consensus 155 vss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQD 169 (933)
T ss_pred EEecCceEEEEEccc
Confidence 555566666666554
No 93
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=82.20 E-value=3.8 Score=42.04 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=39.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
.|++-..- +|.|||+|++.+.|.++|.+. |+...++-- .| .|.||++. |++.|.-
T Consensus 204 mPhSPRWh-dgrLwvldsgtGev~~vD~~~---G~~e~Va~v----pG------------~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 204 MPHSPRWY-QGKLWLLNSGRGELGYVDPQA---GKFQPVAFL----PG------------FTRGLAFA--GDFAFVG 258 (335)
T ss_pred CCcCCcEe-CCeEEEEECCCCEEEEEcCCC---CcEEEEEEC----CC------------CCccccee--CCEEEEE
Confidence 45555553 799999999999999999973 455666533 22 38899998 7766553
No 94
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.05 E-value=11 Score=42.40 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=69.5
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
-.++.+.|+.+...+.+..+.|+.+|...+ ..++.+.|. .+ .-..|++.+.|.-.++-...+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH--------~~--------~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFTGH--------KG--------PVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCC--cEEEEecCC--------CC--------ceEEEEEcCCCceEeecccCC
Confidence 345666666555555555566666665532 234444332 11 135688888888777776778
Q ss_pred EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345 103 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD 169 (426)
Q Consensus 103 rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~ 169 (426)
.|..+| .+. +..+.|- .+ .-..|. +..+|.++|++.+++.|+..|+...
T Consensus 600 ~I~iWDl~~~~~v~~l~~H-t~----------------ti~Sls-FS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGH-TG----------------TIYSLS-FSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cEEEEEcCCCcchhhhhcc-cC----------------ceeEEE-EecCCCEEEecCCCCeEEEEEchhh
Confidence 888888 333 4444432 11 124556 4678999999999999999997753
No 95
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=81.36 E-value=42 Score=33.69 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=79.4
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-+.+.+.+++..+++- ++-.|+.+|.+.+...-+.++-|. -+.-..|.|-.+|+-..+-...
T Consensus 42 qVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h----------------~kNVtaVgF~~dgrWMyTgseD 104 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGH----------------TKNVTAVGFQCDGRWMYTGSED 104 (311)
T ss_pred ceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEecc----------------CCceEEEEEeecCeEEEecCCC
Confidence 45678888887765554 466677777764321111222221 1123457777788877777767
Q ss_pred CEEEEEcCCC--cEEEeCCccCCCCCCCCCCcccccCCC-CCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec---
Q 014345 102 MAIRKISDSG--VTTIAGGKWGRGGGHVDGPSEDAKFSN-DFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--- 175 (426)
Q Consensus 102 ~rIrk~d~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~-P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~--- 175 (426)
+.+++.|-.. ...+. ++.. -+.|+.-+..+.|+++|. ++.|++.|+..+.|..+.
T Consensus 105 gt~kIWdlR~~~~qR~~------------------~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 105 GTVKIWDLRSLSCQRNY------------------QHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred ceEEEEeccCcccchhc------------------cCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCCC
Confidence 7777777222 11211 1112 245554455668888885 688999999887665421
Q ss_pred -------CCCCcceEEEEecCC-ceEEEEEEEe
Q 014345 176 -------GSSFPLGIAVLLAAG-FFGYMLALLQ 200 (426)
Q Consensus 176 -------~~g~P~GIAv~~g~g-~~Gy~~a~lq 200 (426)
-.-.|.|--+.+++. ..-|+|-++.
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 112344444443322 4456666554
No 96
>PTZ00420 coronin; Provisional
Probab=80.82 E-value=97 Score=34.34 Aligned_cols=122 Identities=11% Similarity=-0.003 Sum_probs=70.5
Q ss_pred CceEEEEcCC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345 22 EPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt 99 (426)
...+|++.++ ++++++-...+.|..++...... ....+.....-..|+ -..-..|++++++. ++++-.
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~-~~~~i~~p~~~L~gH---------~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE-SVKEIKDPQCILKGH---------KKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc-cccccccceEEeecC---------CCcEEEEEECCCCCeEEEEEe
Confidence 4678889885 77888877888888888752100 000000000000111 11246788998876 444555
Q ss_pred CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345 100 MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 100 ~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~ 172 (426)
.++.|+.+| .+. +..+... .....++ ++++|.++++-...+.|+.+++....+.
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~------------------~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMP------------------KKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecC------------------CcEEEEE-ECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 578888888 333 2222110 0134666 5778888887766788888888765443
No 97
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.14 E-value=31 Score=35.27 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCceEEEEcC-CCc-EEEEECCCCeEEEEeCCCCcccccEEEecCC--CCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345 21 IEPYSVEVLP-GGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSA--EGYSGHVDGKPREARMNHPKGLTVDDRGN-IY 95 (426)
Q Consensus 21 ~~P~GIaVd~-dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~--~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY 95 (426)
...+++++.| .+. +.|+-....-.++||..+ +......-.+ ..++|+ -++++||+ ||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~gRHFyGH---------------g~fs~dG~~Ly 66 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPPGRHFYGH---------------GVFSPDGRLLY 66 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCCCCEEecC---------------EEEcCCCCEEE
Confidence 3567888888 344 455555555667777764 2222222111 123333 36667776 66
Q ss_pred EEE----CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC
Q 014345 96 IAD----TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG 157 (426)
Q Consensus 96 VAD----t~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg 157 (426)
.++ ++.++|-++| ..+...+.-- .. .| ..|+.|. ..++| .|.|++-|
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s--~G-----------IGPHel~-l~pDG~tLvVANGG 119 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEF-PS--HG-----------IGPHELL-LMPDGETLVVANGG 119 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEe-cC--CC-----------cChhhEE-EcCCCCEEEEEcCC
Confidence 663 4467788888 4344444221 00 11 2599998 56777 88888744
No 98
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.08 E-value=39 Score=38.09 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=30.4
Q ss_pred cCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCC
Q 014345 5 ESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSL 51 (426)
Q Consensus 5 ~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg 51 (426)
..+.+.+++....+ =-+|..+.|+.+++++-+....|+-+..++
T Consensus 439 ~~~~~~~~L~GH~G---PVyg~sFsPd~rfLlScSED~svRLWsl~t 482 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSG---PVYGCSFSPDRRFLLSCSEDSSVRLWSLDT 482 (707)
T ss_pred cCCceeEEeecCCC---ceeeeeecccccceeeccCCcceeeeeccc
Confidence 34445555555444 247889999999999888877777776663
No 99
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=79.49 E-value=31 Score=36.64 Aligned_cols=115 Identities=12% Similarity=0.044 Sum_probs=77.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-++|++.+||.|..+....+-=+++|..++ -.+..++|. +..-.+|+++++|....+-...
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH----------------~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGH----------------IKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccC--cEEEEeccc----------------ccceeeEeECCCceEEeecCCC
Confidence 4678999999999887654433334455432 134555443 3345789999999999998888
Q ss_pred CEEEEEc-CC--CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 102 MAIRKIS-DS--GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 102 ~rIrk~d-~g--~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
+.++++| .. .+.+|.+- -+.-..|.|....|..+++-...+.+......+..+
T Consensus 367 nt~kVWDLR~r~~ly~ipAH-----------------~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAH-----------------SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred CcEEEeeecccccceecccc-----------------cchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 8888888 22 25666542 123456676555788888888888998888665444
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.39 E-value=20 Score=39.92 Aligned_cols=121 Identities=16% Similarity=0.176 Sum_probs=82.5
Q ss_pred CceEEEE-cCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCC------cccccCCcccccccCCcceEEEcCCCCE
Q 014345 22 EPYSVEV-LPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEG------YSGHVDGKPREARMNHPKGLTVDDRGNI 94 (426)
Q Consensus 22 ~P~GIaV-d~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G------~~G~~dG~a~~A~Ln~P~GIaVd~dG~L 94 (426)
+-.+||+ .++.+++++-.-.++|..++.+... ..+++ +... ..|.. ..-..+|..+.|.+
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~---~~l~~-s~n~~t~~sl~sG~k---------~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGT---ATLVA-SFNNVTVNSLGSGPK---------DSIYSLAMNQTGTI 185 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcc---hhhhh-hccccccccCCCCCc---------cceeeeecCCcceE
Confidence 5678888 6677888888888999999998421 11222 1100 11221 22357888899999
Q ss_pred EEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 95 YIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 95 YVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
+|+-..+..||.+| .+. +..+.|-.. .-..|. ++++|+-.++-+..+.|+..++....|
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTd-----------------NVr~ll-~~dDGt~~ls~sSDgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTD-----------------NVRVLL-VNDDGTRLLSASSDGTIRLWDLGQQRC 247 (735)
T ss_pred EEecCcccceEEeccccccceeeeecccc-----------------ceEEEE-EcCCCCeEeecCCCceEEeeeccccce
Confidence 99999999999999 222 555554211 123454 788898888888889999999988777
Q ss_pred Ee
Q 014345 172 AY 173 (426)
Q Consensus 172 ~~ 173 (426)
..
T Consensus 248 l~ 249 (735)
T KOG0308|consen 248 LA 249 (735)
T ss_pred ee
Confidence 54
No 101
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.81 E-value=45 Score=34.61 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=58.4
Q ss_pred CcEEEEEC----CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECC------
Q 014345 32 GELLILDS----ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM------ 100 (426)
Q Consensus 32 G~LYVaD~----~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~------ 100 (426)
..+||.|. ..+||+.+|.+. +++ .|.- ..| |.. .++++++|+ +|++++.
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~---~k~---lGmi--~~g----------~~~--~~~~spdgk~~y~a~T~~sR~~r 62 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADS---GKL---LGMI--DTG----------FLG--NVALSPDGKTIYVAETFYSRGTR 62 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTT---TEE---EEEE--EEE----------SSE--EEEE-TTSSEEEEEEEEEEETTE
T ss_pred cEEEEECCccccccceEEEEECCC---CcE---EEEe--ecc----------cCC--ceeECCCCCEEEEEEEEEecccc
Confidence 35888885 336888888774 221 2210 001 211 267788875 9999874
Q ss_pred ---CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCCce
Q 014345 101 ---NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFDDC 171 (426)
Q Consensus 101 ---N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-gN~rIr~I~l~~~~~ 171 (426)
...|.++|..+.....--.- ..++. ...+..++.+++.+++..+||.+. -...|-+||+.....
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~i------P~k~R-~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv 130 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEI------PPKPR-AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV 130 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEE------TTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred ccceeEEEEEecCcCcccceEec------CCcch-heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCce
Confidence 23455666444322211000 00000 113456777776666778999884 456788888876443
No 102
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.43 E-value=12 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=16.7
Q ss_pred cEEEEECCCCeEEEEeCCC
Q 014345 33 ELLILDSANSNLYRISSSL 51 (426)
Q Consensus 33 ~LYVaD~~n~rI~kid~dg 51 (426)
.|||++...+.|..+|...
T Consensus 5 ~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred EEEEEeCCCCEEEEEECCC
Confidence 4999999999999999863
No 103
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=76.14 E-value=54 Score=35.42 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCceEEEEcCCC-cEEEEECCCCeEEEEeCCCCc-----------ccccEEEecCCCCcccccCCccc------------
Q 014345 21 IEPYSVEVLPGG-ELLILDSANSNLYRISSSLSL-----------YSRPKLVAGSAEGYSGHVDGKPR------------ 76 (426)
Q Consensus 21 ~~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~-----------~g~v~~vaG~~~G~~G~~dG~a~------------ 76 (426)
.-|+++-..||+ +++++...+++|+.+|...+. .-.+..+.++..+.+...++...
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchh
Confidence 369999999988 899999999999999887432 11122222222122222233211
Q ss_pred ---ccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 014345 77 ---EARMNHPKGLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 77 ---~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
.++...| .|++.++|..++|.+..++|..+.
T Consensus 380 i~~~~~hsmP-~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 380 IADPEMHTMP-CLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred hcchhhccCc-ceecCCCCCeehhhccCceEEEEe
Confidence 1112222 578888999999999999999887
No 104
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.87 E-value=73 Score=34.73 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=16.0
Q ss_pred EEEcCCCCEEEEECCCCEEEEEc-CCCc
Q 014345 86 LTVDDRGNIYIADTMNMAIRKIS-DSGV 112 (426)
Q Consensus 86 IaVd~dG~LYVADt~N~rIrk~d-~g~V 112 (426)
|++-+.|..||-+.+.+-+..+. +++|
T Consensus 335 ia~VSRGkaFi~~~~~~~~iqv~~~~~V 362 (668)
T COG4946 335 IALVSRGKAFIMRPWDGYSIQVGKKGGV 362 (668)
T ss_pred EEEEecCcEEEECCCCCeeEEcCCCCce
Confidence 55556677777777655555444 4443
No 105
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=75.24 E-value=42 Score=35.99 Aligned_cols=131 Identities=23% Similarity=0.289 Sum_probs=63.0
Q ss_pred eEEEEcCCCcEEEEEC-------------CCCeEEEEeCCCCcccccEEEe--cC-CCCc---------ccccCCccccc
Q 014345 24 YSVEVLPGGELLILDS-------------ANSNLYRISSSLSLYSRPKLVA--GS-AEGY---------SGHVDGKPREA 78 (426)
Q Consensus 24 ~GIaVd~dG~LYVaD~-------------~n~rI~kid~dg~~~g~v~~va--G~-~~G~---------~G~~dG~a~~A 78 (426)
|.+...++|+++++-. ....|+.++..| ++...- .. ..-. .+...+.....
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG----~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTG----EVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-----EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCC----CEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 7888899999655433 235688888554 332222 11 0000 01111112223
Q ss_pred ccCCcceEEEcC-CCCEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCC---------CC------cccccCCCCC
Q 014345 79 RMNHPKGLTVDD-RGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVD---------GP------SEDAKFSNDF 140 (426)
Q Consensus 79 ~Ln~P~GIaVd~-dG~LYVADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~d---------G~------~~~a~f~~P~ 140 (426)
..-|-++|..++ ++.|+|+-+..+.|.+|+ ++.+.=++|...+......+ |. .....+...+
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 456788999998 678888888888999999 55577777754433221100 11 1112234566
Q ss_pred eeEEECCCC---eEEEEECCCC
Q 014345 141 DVVYIGSSC---SLLVIDRGNR 159 (426)
Q Consensus 141 gIa~vd~~G---~LYVaDsgN~ 159 (426)
.+. .-+++ .|+|-|-++.
T Consensus 349 ~~~-~~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 349 TAH-LIPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp EEE-E-TTS---SEEEEE--TT
T ss_pred ceE-EcCCCCeEEEEEEECCCC
Confidence 776 45677 8999886543
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=75.16 E-value=62 Score=35.47 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=53.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.|.--+.++||.++.+-+.++.|+.++. ++++.++...++.. +.+|. .-..|+|..+|++..+-...
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~A-----H~~g~-------~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDA-----HLPGQ-------DITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeec-----cCCCC-------ceeEEEeccccchhhhccCC
Confidence 4667778999999888889999999987 44434444444432 11111 34789999999999999888
Q ss_pred CEEEEEc
Q 014345 102 MAIRKIS 108 (426)
Q Consensus 102 ~rIrk~d 108 (426)
+.++.+|
T Consensus 386 ~tLKvWD 392 (641)
T KOG0772|consen 386 DTLKVWD 392 (641)
T ss_pred Cceeeee
Confidence 8888887
No 107
>PLN00181 protein SPA1-RELATED; Provisional
Probab=74.54 E-value=1.1e+02 Score=34.68 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=68.9
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCc-cccc-E-EEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSL-YSRP-K-LVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA 97 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~-~g~v-~-~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVA 97 (426)
.-.+|+++++|+++++-..++.|..++..... .+.. . .+. . ..+ -....++++++ .+.+.++
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~-~---~~~----------~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV-E---LAS----------RSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceE-E---ecc----------cCceeeEEeccCCCCEEEE
Confidence 35678999999988887788889888764210 0000 0 000 0 000 01235677765 3566666
Q ss_pred ECCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 98 DTMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 98 Dt~N~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
-..++.|+.+| . +. +.++.+- . ..-++|++...++.++++-...+.|+.+++....+
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~~H--------~---------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMKEH--------E---------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEecCC--------C---------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 55678899988 3 33 2333221 0 12356664344677777777778888888875444
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=73.90 E-value=70 Score=34.32 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=48.0
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI 161 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI 161 (426)
+.+++.+||.|+.+-+.++.|+++| +.. ...-.++- .|+ -..|. +..+|.-+++.+..+.|
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh--------t~~--------vk~i~-FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH--------TGP--------VKAIS-FSENGYWLATAADDGSV 413 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC--------CCc--------eeEEE-eccCceEEEEEecCCeE
Confidence 5678999999999999999999999 333 22222211 111 23566 46788888887777889
Q ss_pred EEEEcCCC
Q 014345 162 REIQLHFD 169 (426)
Q Consensus 162 r~I~l~~~ 169 (426)
..+|+...
T Consensus 414 ~lwDLRKl 421 (506)
T KOG0289|consen 414 KLWDLRKL 421 (506)
T ss_pred EEEEehhh
Confidence 99988763
No 109
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.61 E-value=1.3e+02 Score=34.59 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=57.8
Q ss_pred ccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345 79 RMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG 157 (426)
Q Consensus 79 ~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg 157 (426)
.+..-+.+++.+||.+.++-...+.|++++ ..+.-++.-... -+.-+++. +...|+..++-+-
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH---------------ts~Vt~v~-f~~~g~~llssSL 412 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH---------------TSGVTAVQ-FTARGNVLLSSSL 412 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC---------------CCceEEEE-EEecCCEEEEeec
Confidence 366778999999999999999999999999 444333322111 11235666 5778999999999
Q ss_pred CCeEEEEEcCCCceEe
Q 014345 158 NRAIREIQLHFDDCAY 173 (426)
Q Consensus 158 N~rIr~I~l~~~~~~~ 173 (426)
.++||.+|+....+-.
T Consensus 413 DGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFR 428 (893)
T ss_pred CCeEEeeeecccceee
Confidence 9999999998755543
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.16 E-value=69 Score=36.12 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=65.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-+|+++-+++.+.-++ ..+-|+.++.+|. .+....|. -+.-..|.+..++.++|+-..+
T Consensus 181 ~VRgL~vl~~~~flScs-NDg~Ir~w~~~ge---~l~~~~gh----------------tn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 181 CVRGLAVLDDSHFLSCS-NDGSIRLWDLDGE---VLLEMHGH----------------TNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred heeeeEEecCCCeEeec-CCceEEEEeccCc---eeeeeecc----------------ceEEEEEEecCCCCeEEEecCC
Confidence 46899998776665554 4567888888753 34444443 1234556666677888888888
Q ss_pred CEEEEEcCCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 102 MAIRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 102 ~rIrk~d~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
+.+|+++.+. +..|.=. + ..-|++.+ =.+|.|+|.-+ .++||++..+
T Consensus 241 rtlriW~~~e~~q~I~lP--t---------------tsiWsa~~-L~NgDIvvg~S-DG~VrVfT~~ 288 (745)
T KOG0301|consen 241 RTLRIWKKDECVQVITLP--T---------------TSIWSAKV-LLNGDIVVGGS-DGRVRVFTVD 288 (745)
T ss_pred ceEEEeecCceEEEEecC--c---------------cceEEEEE-eeCCCEEEecc-CceEEEEEec
Confidence 8888888655 3333210 0 01244442 34677777665 4677777755
No 111
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=69.22 E-value=1.4e+02 Score=30.49 Aligned_cols=113 Identities=9% Similarity=0.043 Sum_probs=78.2
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
-.++++.+||+..++-+..+.++.+|..++. ....+.|.. . .-.++++++|..-+|+-+...
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~-------~---------dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT-------K---------DVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecC-------C---------ceEEEEecCCCceeecCCCcc
Confidence 5688999999999998888888889988632 233444442 1 135799999999999998888
Q ss_pred EEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCC
Q 014345 103 AIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHF 168 (426)
Q Consensus 103 rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-gN~rIr~I~l~~ 168 (426)
.|..++ .|. ..++..+.. -.+-..+.|++...+.+|+.. ....|+..++.+
T Consensus 128 Tiklwnt~g~ck~t~~~~~~---------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSH---------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred eeeeeeecccEEEEEecCCC---------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 899998 444 556654310 124567787666545555444 456777777765
No 112
>PRK04792 tolB translocation protein TolB; Provisional
Probab=65.85 E-value=1.8e+02 Score=30.67 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=38.4
Q ss_pred EEEEcCCCc-E-EEEEC-CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE-EC
Q 014345 25 SVEVLPGGE-L-LILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT 99 (426)
Q Consensus 25 GIaVd~dG~-L-YVaD~-~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA-Dt 99 (426)
..+++|||+ | |+++. ++.+|+.++.++ +....+... .|. -...++++||+ |+++ +.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~t---g~~~~lt~~----~g~------------~~~~~wSPDG~~La~~~~~ 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYT---QVREKVTSF----PGI------------NGAPRFSPDGKKLALVLSK 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCC---CCeEEecCC----CCC------------cCCeeECCCCCEEEEEEeC
Confidence 458888887 4 44442 345788888875 333333211 010 01357778876 5544 32
Q ss_pred -CCCEEEEEc-CC-CcEEE
Q 014345 100 -MNMAIRKIS-DS-GVTTI 115 (426)
Q Consensus 100 -~N~rIrk~d-~g-~VstI 115 (426)
++..|..++ ++ .+..+
T Consensus 283 ~g~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 283 DGQPEIYVVDIATKALTRI 301 (448)
T ss_pred CCCeEEEEEECCCCCeEEC
Confidence 344677777 33 34444
No 113
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=65.71 E-value=30 Score=36.72 Aligned_cols=75 Identities=9% Similarity=0.177 Sum_probs=54.9
Q ss_pred cceEEEcCCCCEEEEECCCC--EEEEEcCCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345 83 PKGLTVDDRGNIYIADTMNM--AIRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR 159 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~--rIrk~d~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~ 159 (426)
-.+|++.+||.|..+-.... ||+-+.+|. +-+++|- ...-.+|+ .+++|..+.+-.+.+
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-----------------~k~I~~V~-fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-----------------IKEILSVA-FSPNGYHLATGSSDN 367 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEeccc-----------------ccceeeEe-ECCCceEEeecCCCC
Confidence 35799999999988866544 455444666 6666652 12346777 689999999999999
Q ss_pred eEEEEEcCCCceEeec
Q 014345 160 AIREIQLHFDDCAYQY 175 (426)
Q Consensus 160 rIr~I~l~~~~~~~~~ 175 (426)
.+++.++....+.+..
T Consensus 368 t~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTI 383 (459)
T ss_pred cEEEeeecccccceec
Confidence 9999999887765543
No 114
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=29 Score=34.05 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=39.7
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEE
Q 014345 31 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD 98 (426)
Q Consensus 31 dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVAD 98 (426)
+|.||.-=....+|.||+++. |++...+.-. +-.- .-.+.....+.++|||.++++ ++||+-
T Consensus 185 dG~lyANVw~t~~I~rI~p~s---GrV~~widlS-~L~~--~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDS---GRVVAWIDLS-GLLK--ELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCC---CcEEEEEEcc-CCch--hcCccccccccccceeecCcCCeEEEec
Confidence 677777767778999999996 5554444321 1000 001122347789999999975 788875
No 115
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.71 E-value=1.2e+02 Score=27.96 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=58.0
Q ss_pred EEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEE
Q 014345 27 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK 106 (426)
Q Consensus 27 aVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk 106 (426)
++..+|.||+++ ..+.|+.++... |++..-.-.. +. +..+ .++ .++.|||+... ++|+.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~t---G~~~W~~~~~-~~------------~~~~--~~~-~~~~v~v~~~~-~~l~~ 90 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAKT---GKVLWRFDLP-GP------------ISGA--PVV-DGGRVYVGTSD-GSLYA 90 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETTT---SEEEEEEECS-SC------------GGSG--EEE-ETTEEEEEETT-SEEEE
T ss_pred EEEeCCEEEEEc-CCCEEEEEECCC---CCEEEEeecc-cc------------ccce--eee-cccccccccce-eeeEe
Confidence 565578899996 688999999853 3333222111 00 1111 233 35788888854 48999
Q ss_pred Ec--CCCcEEE-eCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345 107 IS--DSGVTTI-AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 107 ~d--~g~VstI-aGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~ 172 (426)
+| +|.+.-. ..... ..+.+..+...++ + .+.+|++.. ++.|+.+++......
T Consensus 91 ~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~~~-~-~~~~~~~~~-~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSS-----------PPAGVRSSSSPAV-D-GDRLYVGTS-SGKLVALDPKTGKLL 145 (238)
T ss_dssp EETTTSCEEEEEEE-SS-----------CTCSTB--SEEEE-E-TTEEEEEET-CSEEEEEETTTTEEE
T ss_pred cccCCcceeeeeccccc-----------cccccccccCceE-e-cCEEEEEec-cCcEEEEecCCCcEE
Confidence 98 5554221 11100 0111223334442 2 455666664 567777776655443
No 116
>PTZ00420 coronin; Provisional
Probab=63.74 E-value=2.4e+02 Score=31.29 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=63.9
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
....++++++|.++++-...+.|+.+|..... .+..+.+. .| +..... + .+ ..+.+++..+++=..+
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH----~g---~~~s~~-v-~~--~~fs~d~~~IlTtG~d 235 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIH----DG---GKNTKN-I-WI--DGLGGDDNYILSTGFS 235 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEecc----cC---CceeEE-E-Ee--eeEcCCCCEEEEEEcC
Confidence 45678888888888877777788888876421 12222221 11 100000 0 00 1123455655553222
Q ss_pred ----CEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345 102 ----MAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY 173 (426)
Q Consensus 102 ----~rIrk~d-~--g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~ 173 (426)
+.|+.+| . +. +.++..... . .+.--.+..++|.+|++-.+.+.|+.++...+.+..
T Consensus 236 ~~~~R~VkLWDlr~~~~pl~~~~ld~~---~-------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 236 KNNMREMKLWDLKNTTSALVTMSIDNA---S-------------APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred CCCccEEEEEECCCCCCceEEEEecCC---c-------------cceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 3577777 2 22 223211100 0 010112345568999999999999999987654443
No 117
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=63.40 E-value=1e+02 Score=31.60 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 014345 31 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 31 dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
+|.||+++. ++.++.++... |+..+-. .+..+..++++ ++.||+++. ++.+..++
T Consensus 256 ~~~vy~~~~-~g~l~ald~~t---G~~~W~~-----------------~~~~~~~~~~~-~~~vy~~~~-~g~l~ald 310 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRS---GQIVWKR-----------------EYGSVNDFAVD-GGRIYLVDQ-NDRVYALD 310 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCC---CCEEEee-----------------cCCCccCcEEE-CCEEEEEcC-CCeEEEEE
Confidence 566777763 56777777763 3322221 01122334554 578998875 57888888
No 118
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.46 E-value=1e+02 Score=36.08 Aligned_cols=78 Identities=9% Similarity=0.148 Sum_probs=55.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.--||++.|.--..++...++.|+-+|.. +-+.+..++.. ||+ -+||++.+++-|||+-...
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYR------M~tli~rFdeH----dGp--------VRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYR------MGTLIDRFDEH----DGP--------VRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhh------hhhHHhhhhcc----CCc--------cceeeecCCCCeEEecCCc
Confidence 45688888875566666678899999875 23344333222 443 3699999999999998888
Q ss_pred CEEEEEc-CC-C-cEEEeC
Q 014345 102 MAIRKIS-DS-G-VTTIAG 117 (426)
Q Consensus 102 ~rIrk~d-~g-~-VstIaG 117 (426)
-.|++++ +. . +.|+.|
T Consensus 73 ykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred cEEEEEecccceehhhhcc
Confidence 8999998 33 3 566665
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=60.70 E-value=1.9e+02 Score=31.84 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=66.4
Q ss_pred eEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCE
Q 014345 24 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 103 (426)
Q Consensus 24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~r 103 (426)
..+++|+.|.=+|+......|.-+|..|=- ....-+ -. +.-+.-+.-+.+.+...|+.+++=+++..
T Consensus 171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-as~~~f-r~-----------l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 171 SALAVDPSGARFVSGSLDYTVKFWDFQGMD-ASMRSF-RQ-----------LQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EEeeecCCCceeeeccccceEEEEeccccc-ccchhh-hc-----------cCcccccccceeeecCCCCeEEEEecCcc
Confidence 567888888877877777777777766410 000000 00 00011122356778888888888888888
Q ss_pred EEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 104 IRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 104 Irk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
++.+| +|- +..+.|...-+.--.+-| ....-++.++-+.+...+++-...+.+|.++++
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKG-----Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKG-----HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCC-----ceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 99999 554 345555433211000111 111223334344445566666656666666554
No 120
>smart00284 OLF Olfactomedin-like domains.
Probab=60.67 E-value=1.3e+02 Score=29.94 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC--EEEEECCCCEE--EE
Q 014345 31 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN--IYIADTMNMAI--RK 106 (426)
Q Consensus 31 dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~--LYVADt~N~rI--rk 106 (426)
+|.||..-....+|.|++...........+-+. |+.+-..-...=..=-++|+|.+|. ||-+...++.| -+
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a-----~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSk 157 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGA-----GYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISK 157 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCcc-----ccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEe
Confidence 689999888888999999985431111111111 1100000000000113789998875 66665544444 48
Q ss_pred EcCCC
Q 014345 107 ISDSG 111 (426)
Q Consensus 107 ~d~g~ 111 (426)
++...
T Consensus 158 Lnp~t 162 (255)
T smart00284 158 LNPAT 162 (255)
T ss_pred eCccc
Confidence 88554
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=59.69 E-value=3.3e+02 Score=31.93 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=63.6
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
-..++|+.+|+..++-+..-.|..++.+.. +....+.|. ++. -.+|.++++|++.++-..|+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--s~~~~lrgh--------~ap--------Vl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--SQEKVLRGH--------DAP--------VLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEecccc--chheeeccc--------CCc--------eeeeeEcCCCCEEEEEecCc
Confidence 356677777777666655555555554421 223333322 221 24799999999888888899
Q ss_pred EEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcCC
Q 014345 103 AIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 103 rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaDsgN~rIr~I~l~~ 168 (426)
.|++++ ++.+ .++.+.... .+...+.+.......++ |.+.+.-. .+.|..++..+
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~----------n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKD----------NEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSRKG 219 (933)
T ss_pred eEEEEEcccchhhhhcccCCcc----------ccccccceeeeeeecCCCCeEEeecc-CCeEEEEccCC
Confidence 999998 5544 344332110 11112333333334444 55555444 35666666554
No 122
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=2.1e+02 Score=29.32 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=50.1
Q ss_pred EecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345 13 VFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG 92 (426)
Q Consensus 13 v~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG 92 (426)
.|.|.... -..|++.|-++.+++-+....|+-+|..... +.|. -.+..+--+|+|+.|
T Consensus 95 YF~GH~~~--V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-------------cqg~-------l~~~~~pi~AfDp~G 152 (311)
T KOG1446|consen 95 YFPGHKKR--VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-------------CQGL-------LNLSGRPIAAFDPEG 152 (311)
T ss_pred EcCCCCce--EEEEEecCCCCeEEecccCCeEEeeEecCCC-------------CceE-------EecCCCcceeECCCC
Confidence 45555533 5678888877888888777788877775211 1110 113345568999999
Q ss_pred CEEEEECCCCEEEEEc
Q 014345 93 NIYIADTMNMAIRKIS 108 (426)
Q Consensus 93 ~LYVADt~N~rIrk~d 108 (426)
.|+.+-..+..|..+|
T Consensus 153 LifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 153 LIFALANGSELIKLYD 168 (311)
T ss_pred cEEEEecCCCeEEEEE
Confidence 9999888877999888
No 123
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.50 E-value=1.7e+02 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=25.6
Q ss_pred cCCcc-eEEEcCCCCEEEEECCCCEEEEEc
Q 014345 80 MNHPK-GLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 80 Ln~P~-GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
|.+|- .+.+.++|+.-.+-..+..||.+|
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 55564 899999999999999999999999
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=59.27 E-value=1.8e+02 Score=30.34 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=47.4
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
..++.+++.|.++.+...|++|..+|.++-. ..+++ + |...--..||..++|...++-+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~l-------s---------aH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARML-------S---------AHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhh-------h---------ccccceeEEEecCCCCEeeeecCCc
Confidence 4677788899999999999999999987421 11111 1 1122235788888888888877777
Q ss_pred EEEEEc
Q 014345 103 AIRKIS 108 (426)
Q Consensus 103 rIrk~d 108 (426)
.|..+|
T Consensus 88 si~lwD 93 (405)
T KOG1273|consen 88 SIKLWD 93 (405)
T ss_pred eeEEEe
Confidence 777776
No 125
>PTZ00421 coronin; Provisional
Probab=58.73 E-value=2.7e+02 Score=30.19 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=45.1
Q ss_pred ceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 23 PYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 23 P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
...|++.+++ +++++-...+.|..+|..... .+..+.+. -..-.+|++.++|.++++-..+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h----------------~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCH----------------SDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCC----------------CCceEEEEEECCCCEEEEecCC
Confidence 4567777754 566666667778888776321 11122111 1124678999999999888889
Q ss_pred CEEEEEc
Q 014345 102 MAIRKIS 108 (426)
Q Consensus 102 ~rIrk~d 108 (426)
+.|+.+|
T Consensus 190 g~IrIwD 196 (493)
T PTZ00421 190 KKLNIID 196 (493)
T ss_pred CEEEEEE
Confidence 9999999
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=58.43 E-value=81 Score=32.68 Aligned_cols=123 Identities=18% Similarity=0.190 Sum_probs=78.0
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-+.+++.|...|+++.+..+.|.-||.... -+... ..-..+ -..-..|.+.+.|....+-+..
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~-------saKrA--~K~~qd-------~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKT-------SAKRA--FKVFQD-------TEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccH-------HHHHH--HHHhhc-------cceeeeEeecCCCceEEEecCC
Confidence 3467788887788888888888887776421 11110 000000 1113478999999988888888
Q ss_pred CEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345 102 MAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 102 ~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~ 172 (426)
..+|.+|-++...++... .+++ .-..-+.+-| .+.++|||+-+..+.|+.++--...|.
T Consensus 238 p~~rlYdv~T~Qcfvsan------Pd~q-----ht~ai~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSAN------PDDQ-----HTGAITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred CceeEEeccceeEeeecC------cccc-----cccceeEEEe-cCCccEEEEeccCCcEEeeccccHHHH
Confidence 888888866655444311 1111 0112345554 678999999999999999987666664
No 127
>PRK01742 tolB translocation protein TolB; Provisional
Probab=57.81 E-value=2.4e+02 Score=29.39 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=38.9
Q ss_pred eEEEEcCCCc-E-EEEEC-CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE-E
Q 014345 24 YSVEVLPGGE-L-LILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-D 98 (426)
Q Consensus 24 ~GIaVd~dG~-L-YVaD~-~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA-D 98 (426)
..++++|||+ | |+++. .+..|+.++..+ +....+... .|. -..+++.+||+ |+++ +
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t---g~~~~l~~~----~g~------------~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRS---GARKVVASF----RGH------------NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCC---CceEEEecC----CCc------------cCceeECCCCCEEEEEEe
Confidence 4568888887 4 33332 235788888764 333333211 111 01367888886 4443 3
Q ss_pred -CCCCEEEEEc-CCC-cEEEe
Q 014345 99 -TMNMAIRKIS-DSG-VTTIA 116 (426)
Q Consensus 99 -t~N~rIrk~d-~g~-VstIa 116 (426)
.++..|..++ +++ ...+.
T Consensus 268 ~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 268 KDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred cCCcEEEEEEECCCCCeEeec
Confidence 3344577777 333 44443
No 128
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=57.28 E-value=19 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=27.4
Q ss_pred ccCCcceEEEcCCCCEEEEECCCCEEEEEc
Q 014345 79 RMNHPKGLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 79 ~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
.|.-|.||.+|.||..|++|-..+.+.+.+
T Consensus 465 ~fylphgl~~dkdgf~~~tdvash~v~k~k 494 (501)
T KOG3567|consen 465 LFYLPHGLSIDKDGFYWVTDVASHQVFKLK 494 (501)
T ss_pred ceecCCcceecCCCcEEeecccchhhhhcc
Confidence 488899999999999999999988888776
No 129
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=57.00 E-value=2.6e+02 Score=30.39 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=66.7
Q ss_pred CCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 20 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 20 ~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
..+-.+.++.+ ++.++|+....|.|.-+|....-.-.++.-.|.+ -..|++-+.|.++++-
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~p------------------Ve~vl~lpsgs~iasA 214 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCP------------------VESVLALPSGSLIASA 214 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCc------------------eeeEEEcCCCCEEEEc
Confidence 34556667666 6779999999999998887632100111111110 1356777788888777
Q ss_pred CCCCEEEEEc-C-CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345 99 TMNMAIRKIS-D-SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 99 t~N~rIrk~d-~-g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~ 172 (426)
.+ +.|+++| . |+.. +.... . --.-+++++ ..++.-+++-.-.+.|.+++.......
T Consensus 215 gG-n~vkVWDl~~G~qll~~~~~-H---------------~KtVTcL~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 215 GG-NSVKVWDLTTGGQLLTSMFN-H---------------NKTVTCLRL-ASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred CC-CeEEEEEecCCceehhhhhc-c---------------cceEEEEEe-ecCCceEeecccccceEEEEccceEEE
Confidence 65 5677887 3 4421 11111 0 112456664 445566666666778888886544433
No 130
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=56.95 E-value=1.5e+02 Score=30.79 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=52.4
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
-..|.+.|.|+++++.+....++.+|-++ ...++-.- ...++ -..-+.|-..+.|+|||+-+..+
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T-----~Qcfvsan-Pd~qh---------t~ai~~V~Ys~t~~lYvTaSkDG 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNT-----YQCFVSAN-PDDQH---------TGAITQVRYSSTGSLYVTASKDG 283 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEeccc-----eeEeeecC-ccccc---------ccceeEEEecCCccEEEEeccCC
Confidence 35788889999888777666666667663 23333221 11111 11235677888999999999999
Q ss_pred EEEEEc--CCC-cEEEe
Q 014345 103 AIRKIS--DSG-VTTIA 116 (426)
Q Consensus 103 rIrk~d--~g~-VstIa 116 (426)
.|+.+| .+. |.++.
T Consensus 284 ~IklwDGVS~rCv~t~~ 300 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRTIG 300 (430)
T ss_pred cEEeeccccHHHHHHHH
Confidence 999999 555 66664
No 131
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=55.51 E-value=3.3e+02 Score=30.17 Aligned_cols=89 Identities=21% Similarity=0.201 Sum_probs=60.1
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcCC--CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIRKISDS--GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 160 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIrk~d~g--~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r 160 (426)
-+.+++.++|.-+++-...++|..++.+ .-..++|... -+.-.+++ ....+.|+.+-++ +.
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h---------------~nqI~~~~-~~~~~~~~t~g~D-d~ 385 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH---------------TNQIKGMA-ASESGELFTIGWD-DT 385 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc---------------cceEEEEe-ecCCCcEEEEecC-Ce
Confidence 4678999998866666678999999843 3345555321 12335666 4556888888874 68
Q ss_pred EEEEEcCCCceEee---cCCCCcceEEEEec
Q 014345 161 IREIQLHFDDCAYQ---YGSSFPLGIAVLLA 188 (426)
Q Consensus 161 Ir~I~l~~~~~~~~---~~~g~P~GIAv~~g 188 (426)
|+++++....++-. .....|.|+|++..
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCC
Confidence 99999876655433 44467999998855
No 132
>PLN00181 protein SPA1-RELATED; Provisional
Probab=55.50 E-value=2.5e+02 Score=31.82 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=44.5
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR 159 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~ 159 (426)
...++++++|.++++-..++.|..++... +.+...... +...+......-..-..++ ..+++.++|+-..++
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~----~~~~~~~~~~~~~~V~~v~-ws~~~~~lva~~~dG 785 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTI----DPVSGLEVDDASQFISSVC-WRGQSSTLVAANSTG 785 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccC----CcccccccCCCCcEEEEEE-EcCCCCeEEEecCCC
Confidence 35688888899888888889999888322 111111000 0000100000011234566 467787788777788
Q ss_pred eEEEEEc
Q 014345 160 AIREIQL 166 (426)
Q Consensus 160 rIr~I~l 166 (426)
.|+.+++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 8888764
No 133
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=55.26 E-value=2.3e+02 Score=28.78 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred ccCCcceEEEcCC---CC--EEEEECCCCEEEEEc--C---CCcEEEeCCccCCCCCCCCCCcccccCC-CCCeeEEECC
Q 014345 79 RMNHPKGLTVDDR---GN--IYIADTMNMAIRKIS--D---SGVTTIAGGKWGRGGGHVDGPSEDAKFS-NDFDVVYIGS 147 (426)
Q Consensus 79 ~Ln~P~GIaVd~d---G~--LYVADt~N~rIrk~d--~---g~VstIaGg~~g~~~G~~dG~~~~a~f~-~P~gIa~vd~ 147 (426)
.++.|.|+|+-.+ |. ++|.+.. +-|+.+. + |.|.+.+- + +-+|. ..-+++..|.
T Consensus 151 ~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k~v----R----------~fk~~tQTEG~VaDdE 215 (364)
T COG4247 151 SSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTKLV----R----------QFKIPTQTEGMVADDE 215 (364)
T ss_pred CcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEcceee----E----------eeecCCcccceeeccc
Confidence 4778999998753 54 4455553 5565544 2 22322211 0 11111 2234555777
Q ss_pred CCeEEEEECCCCeEEEEEcCCCceE----eecCCCC------cceEEEEecCCceEEEEEEEecc
Q 014345 148 SCSLLVIDRGNRAIREIQLHFDDCA----YQYGSSF------PLGIAVLLAAGFFGYMLALLQRR 202 (426)
Q Consensus 148 ~G~LYVaDsgN~rIr~I~l~~~~~~----~~~~~g~------P~GIAv~~g~g~~Gy~~a~lq~~ 202 (426)
.|.|||++. +-.|+++..+..... .....+. --|+.+.-+-.--||.++..|..
T Consensus 216 tG~LYIaeE-dvaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGn 279 (364)
T COG4247 216 TGFLYIAEE-DVAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGN 279 (364)
T ss_pred cceEEEeec-cceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCC
Confidence 899999996 578888886542221 1111111 23455555555567777665543
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=54.55 E-value=2.6e+02 Score=28.78 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=84.9
Q ss_pred EEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEE
Q 014345 27 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK 106 (426)
Q Consensus 27 aVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk 106 (426)
++..+-.+|+.+ -.|.|+++|.+++ ....+|+.. .+ -.+|.....-+.+|+-.+..+|..
T Consensus 61 ~F~d~~~~~~G~-~dg~vr~~Dln~~----~~~~igth~------~~---------i~ci~~~~~~~~vIsgsWD~~ik~ 120 (323)
T KOG1036|consen 61 AFADESTIVTGG-LDGQVRRYDLNTG----NEDQIGTHD------EG---------IRCIEYSYEVGCVISGSWDKTIKF 120 (323)
T ss_pred eccCCceEEEec-cCceEEEEEecCC----cceeeccCC------Cc---------eEEEEeeccCCeEEEcccCccEEE
Confidence 333344555554 3567778877742 244444420 11 245666665678888888899999
Q ss_pred EcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee-cCCCC---cce
Q 014345 107 ISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-YGSSF---PLG 182 (426)
Q Consensus 107 ~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~-~~~g~---P~G 182 (426)
+|... ....+ .+..+..|-+.+..|+.+|.-+.+.+|..+++...+-..+ ..+++ -..
T Consensus 121 wD~R~-~~~~~-----------------~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 121 WDPRN-KVVVG-----------------TFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred Eeccc-ccccc-----------------ccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 98443 11112 1223334555677787777777788999999876443322 12221 224
Q ss_pred EEEEecCCceEEEEEEEecccceeeeccC
Q 014345 183 IAVLLAAGFFGYMLALLQRRVGTIVSSQN 211 (426)
Q Consensus 183 IAv~~g~g~~Gy~~a~lq~~~g~~~~s~~ 211 (426)
|++.. ..-||+.+..-.|+-.-++.+.
T Consensus 183 v~~~p--n~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 183 VALVP--NGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEec--CCCceEEEeecceEEEEccCCc
Confidence 55554 3568888877777777666554
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=54.53 E-value=2.8e+02 Score=29.07 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=39.2
Q ss_pred eEEEEcCCCc-E-EEEE-CCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE-E
Q 014345 24 YSVEVLPGGE-L-LILD-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-D 98 (426)
Q Consensus 24 ~GIaVd~dG~-L-YVaD-~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA-D 98 (426)
...+++|||. | |++. .+...|+.++.++ |+...+... .+. -..+++++||+ |+++ +
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~---G~~~~l~~~----~~~------------~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASF----PRH------------NGAPAFSPDGSKLAFALS 262 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CCeEEccCC----CCC------------cCCeEECCCCCEEEEEEc
Confidence 3568888886 3 3333 2345677777764 333333211 010 12367888886 5554 3
Q ss_pred -CCCCEEEEEc-CC-CcEEEe
Q 014345 99 -TMNMAIRKIS-DS-GVTTIA 116 (426)
Q Consensus 99 -t~N~rIrk~d-~g-~VstIa 116 (426)
.++..|+.++ ++ .+..+.
T Consensus 263 ~~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred CCCCcEEEEEECCCCCEEEcc
Confidence 2345788888 33 344443
No 136
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=53.96 E-value=2.7e+02 Score=28.72 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=54.6
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-+.|.+-|+|.-+++-+.+..++-+|..... .+.++.... - ...-++|++...|+|.+|-..+
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~--~~a~ys~~~-~-------------~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQ--ELAVYSHDS-I-------------ICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCCc--EEeeeccCc-c-------------cCCceeEEEcccccEEEeeecC
Confidence 45778888899888888888888777776422 233332111 0 1224689999999999998777
Q ss_pred CEEEEEc--CCC-cEEEeC
Q 014345 102 MAIRKIS--DSG-VTTIAG 117 (426)
Q Consensus 102 ~rIrk~d--~g~-VstIaG 117 (426)
..+.++| ++. +.+++|
T Consensus 295 ~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred CceeEeeccccceEEEeec
Confidence 8888888 555 455554
No 137
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.80 E-value=1.2e+02 Score=34.56 Aligned_cols=71 Identities=21% Similarity=0.117 Sum_probs=50.9
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
.-++|++.| |.+.|++.+-.++|+.++.... .++.=. |- + ..-+.||+.|+|...|.-+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~-----~Vv~W~--------Dl-----~-~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDK-----KVVDWN--------DL-----R-DLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcC-----eeEeeh--------hh-----h-hhheeEEeccCCceEEEEEe
Confidence 568999999 7789999988888888876521 222100 00 0 12467999999999999999
Q ss_pred CCEEEEEcCCC
Q 014345 101 NMAIRKISDSG 111 (426)
Q Consensus 101 N~rIrk~d~g~ 111 (426)
|+..+.++..+
T Consensus 472 ~G~C~fY~t~~ 482 (712)
T KOG0283|consen 472 NGYCRFYDTEG 482 (712)
T ss_pred ccEEEEEEccC
Confidence 99999998433
No 138
>PRK04922 tolB translocation protein TolB; Provisional
Probab=51.54 E-value=3e+02 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=14.4
Q ss_pred eEEEcCCCC-E-EEEECC-CCEEEEEc
Q 014345 85 GLTVDDRGN-I-YIADTM-NMAIRKIS 108 (426)
Q Consensus 85 GIaVd~dG~-L-YVADt~-N~rIrk~d 108 (426)
..++++||. | |.+|.. +..|..++
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEE
Confidence 457788876 3 344432 34577777
No 139
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=51.53 E-value=3.1e+02 Score=29.34 Aligned_cols=29 Identities=17% Similarity=0.511 Sum_probs=24.5
Q ss_pred cCCcc---eEEEcCCCCEEEEECCCCEEEEEc
Q 014345 80 MNHPK---GLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 80 Ln~P~---GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
|.+|. .+.+..+|.++++-....+||++|
T Consensus 170 l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 170 LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred cCCCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 44554 788888999999999999999999
No 140
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=51.46 E-value=2.4e+02 Score=33.80 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=75.2
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcC--CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccC
Q 014345 4 FESGYTVETVFDGSKLGIEPYSVEVLP--GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN 81 (426)
Q Consensus 4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~--dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln 81 (426)
+++|.....+-++..-..+-..+.+-. |-.|.++-+.++.|+.+..--..-++.++|-+.. +-.+...|.
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~-~Ls~~~~~~------- 1164 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS-SLSDQLPGA------- 1164 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec-cccccCccC-------
Confidence 445554444444443333344555432 4457777777887777644321114556665432 222221111
Q ss_pred CcceEEEc---CCCCEEEEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 014345 82 HPKGLTVD---DRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN 158 (426)
Q Consensus 82 ~P~GIaVd---~dG~LYVADt~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN 158 (426)
.-.|+.+| ..|.|+++-- -..||++|...-..++.-..+.. +.++.+...-..|+++++....
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~-------------t~vTaLS~~~~~gn~i~AGfaD 1230 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSS-------------TLVTALSADLVHGNIIAAGFAD 1230 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCC-------------ccceeecccccCCceEEEeecC
Confidence 12346666 3678888753 46677888433233332221111 1244444444458999999999
Q ss_pred CeEEEEEcC
Q 014345 159 RAIREIQLH 167 (426)
Q Consensus 159 ~rIr~I~l~ 167 (426)
++||.+|..
T Consensus 1231 GsvRvyD~R 1239 (1387)
T KOG1517|consen 1231 GSVRVYDRR 1239 (1387)
T ss_pred CceEEeecc
Confidence 999999965
No 141
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=49.57 E-value=2.1e+02 Score=30.53 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc-----CCCCEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD-----DRGNIYI 96 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd-----~dG~LYV 96 (426)
.-.+|+.+|||..+.+-+.++.|..+++..+. -....+.|.. . .-.+|+.- +....+.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~-------K---------~It~Lawep~hl~p~~r~la 221 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHK-------K---------WITALAWEPLHLVPPCRRLA 221 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcc-------c---------ceeEEeecccccCCCcccee
Confidence 45689999999999999999999999987432 1112222221 1 12233332 3445556
Q ss_pred EECCCCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345 97 ADTMNMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 97 ADt~N~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
+-...+.|+++| ..+ +.++.|-. ..-++|. ..-+|.|| +-+...+|++.+...
T Consensus 222 s~skDg~vrIWd~~~~~~~~~lsgHT-----------------~~VTCvr-wGG~gliy-SgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 222 SSSKDGSVRIWDTKLGTCVRTLSGHT-----------------ASVTCVR-WGGEGLIY-SGSQDRTIKVWRALD 277 (480)
T ss_pred cccCCCCEEEEEccCceEEEEeccCc-----------------cceEEEE-EcCCceEE-ecCCCceEEEEEccc
Confidence 666667777777 443 44554421 1123343 34445555 444567888887654
No 142
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=49.26 E-value=1.2e+02 Score=25.57 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=12.6
Q ss_pred cceEEEcCCCCEEEEECCCC
Q 014345 83 PKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~ 102 (426)
+..+.+.++|+|.+-|..+.
T Consensus 87 ~~~~~L~ddGnlvl~~~~~~ 106 (114)
T smart00108 87 NYVLVLLDDGNLVIYDSDGN 106 (114)
T ss_pred ceEEEEeCCCCEEEECCCCC
Confidence 34566777777777765443
No 143
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=48.24 E-value=2.5e+02 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=15.0
Q ss_pred EEEcCCCCEEEEECCCCEEEEEc
Q 014345 86 LTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 86 IaVd~dG~LYVADt~N~rIrk~d 108 (426)
.+++ ++.||+++. ++.|..++
T Consensus 275 p~~~-~~~vyv~~~-~G~l~~~d 295 (377)
T TIGR03300 275 PAVD-DNRLYVTDA-DGVVVALD 295 (377)
T ss_pred ceEe-CCEEEEECC-CCeEEEEE
Confidence 4444 568888874 67888888
No 144
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=47.81 E-value=4.8e+02 Score=30.88 Aligned_cols=67 Identities=6% Similarity=0.048 Sum_probs=47.9
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 160 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r 160 (426)
.+|+.++++.+.|+=...+.|..++..+ +.++-| .-..+-|++ +|+-|..+-+-++.+.
T Consensus 133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~-----------------H~s~VKGvs-~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG-----------------HQSLVKGVS-WDPIGKYFASQSDDRT 194 (942)
T ss_pred ceeccCCCccEEEEecccceEEEEccccceeeeeeec-----------------ccccccceE-ECCccCeeeeecCCce
Confidence 3688889989999988889999999433 233332 123456777 6888888888888888
Q ss_pred EEEEEcCC
Q 014345 161 IREIQLHF 168 (426)
Q Consensus 161 Ir~I~l~~ 168 (426)
|.+++...
T Consensus 195 ikvwrt~d 202 (942)
T KOG0973|consen 195 LKVWRTSD 202 (942)
T ss_pred EEEEEccc
Confidence 87777443
No 145
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=47.52 E-value=71 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEe
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRIS 48 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid 48 (426)
...+|++.++++++++-...+.|..++
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999888887888887764
No 146
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.35 E-value=2.1e+02 Score=32.60 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=67.4
Q ss_pred EEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEE
Q 014345 26 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIR 105 (426)
Q Consensus 26 IaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIr 105 (426)
++++++|.++++-. +++|..++..+ +.+....|.. . ....-..+++++|+...++-..+..++
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t---~~~~l~s~~~----e---------d~d~ita~~l~~d~~~L~~a~rs~llr 87 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVAT---GSIALPSGSN----E---------DEDEITALALTPDEEVLVTASRSQLLR 87 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccC---CceecccCCc----c---------chhhhheeeecCCccEEEEeeccceEE
Confidence 89999999777764 66888888764 3333222221 1 134457899999988777777777788
Q ss_pred EEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345 106 KIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 106 k~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~ 172 (426)
.++ .+.+ .....- . ..|.-+..+++.+.|+-+-.-.++|++.+.....|+
T Consensus 88 v~~L~tgk~irswKa~--H---------------e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAI--H---------------EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred EEEcccchHhHhHhhc--c---------------CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 877 4442 222110 0 123333335555544444444577777777766665
No 147
>PRK05137 tolB translocation protein TolB; Provisional
Probab=46.78 E-value=3.6e+02 Score=28.09 Aligned_cols=28 Identities=7% Similarity=0.208 Sum_probs=18.4
Q ss_pred eEEEEcCCCc-E-EEEEC-CCCeEEEEeCCC
Q 014345 24 YSVEVLPGGE-L-LILDS-ANSNLYRISSSL 51 (426)
Q Consensus 24 ~GIaVd~dG~-L-YVaD~-~n~rI~kid~dg 51 (426)
...++++||. | |+++. ++..|+.++..+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~ 235 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLET 235 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCC
Confidence 3457788887 4 44432 346788888875
No 148
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.68 E-value=1.4e+02 Score=31.51 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=47.3
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEE-e-CCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRI-S-SSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~ki-d-~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt 99 (426)
.-.+||++++|.++.+-+..+.|.|+ . ++|. ++.- +..|. ....-..|++++++.+..|-.
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~---kl~e------FRRG~--------~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ---KLYE------FRRGT--------YPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCcc---Eeee------eeCCc--------eeeEEEEEEECCCCCeEEEec
Confidence 35689999999999998888887765 2 2321 1111 11221 122346899999999888888
Q ss_pred CCCEEEEEc
Q 014345 100 MNMAIRKIS 108 (426)
Q Consensus 100 ~N~rIrk~d 108 (426)
.+..|.+|.
T Consensus 238 ~TeTVHiFK 246 (391)
T KOG2110|consen 238 NTETVHIFK 246 (391)
T ss_pred CCCeEEEEE
Confidence 778887776
No 149
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=46.36 E-value=1.3e+02 Score=25.44 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=9.9
Q ss_pred ceEEEcCCCCEEEEECCC
Q 014345 84 KGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N 101 (426)
..+.+.++|++.+-|..+
T Consensus 89 ~~~~L~ddGnlvl~~~~~ 106 (116)
T cd00028 89 YVLVLLDDGNLVLYDSDG 106 (116)
T ss_pred eEEEEeCCCCEEEECCCC
Confidence 345555666666665433
No 150
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=45.72 E-value=93 Score=36.40 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=57.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-.+|+.+|++.++|+-...+.|..++... +..+.++-|. ...+.|+++||-|..+.+.+..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H----------------~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGH----------------QSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEcccc--ceeeeeeecc----------------cccccceEECCccCeeeeecCC
Confidence 456788899999999988889999998763 2344444433 3358999999999999998888
Q ss_pred CEEEEEc--CCCc-EEEeC
Q 014345 102 MAIRKIS--DSGV-TTIAG 117 (426)
Q Consensus 102 ~rIrk~d--~g~V-stIaG 117 (426)
+.|.++. +-++ .+|.+
T Consensus 193 rtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred ceEEEEEcccceeeEeecc
Confidence 8887777 4443 44444
No 151
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=45.33 E-value=3.5e+02 Score=27.50 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=65.4
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEE---EcCCCCEEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLT---VDDRGNIYIAD 98 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIa---Vd~dG~LYVAD 98 (426)
.+..+.+.++|.++..-. .+.|.-++.+. ++.++ .+..|..|. ..++-.+|||-
T Consensus 186 ~VtSlEvs~dG~ilTia~-gssV~Fwdaks--f~~lK--------------------s~k~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAY-GSSVKFWDAKS--FGLLK--------------------SYKMPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred CCcceeeccCCCEEEEec-CceeEEecccc--cccee--------------------eccCccccccccccCCCceEEec
Confidence 467777877887654432 33455555541 01111 123355443 34567899999
Q ss_pred CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 99 TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 99 t~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
.....+.++| ..+...-.-.+ ..|.--++|. ..++|.+|-+-+..+.||.....
T Consensus 243 ged~~~~kfDy~TgeEi~~~nk--------------gh~gpVhcVr-FSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNK--------------GHFGPVHCVR-FSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CcceEEEEEeccCCceeeeccc--------------CCCCceEEEE-ECCCCceeeccCCCceEEEEEec
Confidence 8889999999 33322211100 1232346677 58899999999999999988754
No 152
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=45.23 E-value=1.9e+02 Score=30.61 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=65.7
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
.-.+|+|||-++.|++.+....|-.+|..+ |++.+. .|. ...-.||+|.+.--..++-..
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlat---g~LkltltGh----------------i~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLAT---GQLKLTLTGH----------------IETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEccc---CeEEEeecch----------------hheeeeeeecccCceEEEecC
Confidence 568999999767777777777777778875 444433 222 233567888866444455444
Q ss_pred CCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345 101 NMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 101 N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
...|.-+| .+.+ .-..| .|+.-.+|. +.+.-.++++-.....||+.|...
T Consensus 214 dk~VKCwDLe~nkvIR~YhG-----------------HlS~V~~L~-lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHG-----------------HLSGVYCLD-LHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred CCeeEEEechhhhhHHHhcc-----------------ccceeEEEe-ccccceeEEecCCcceEEEeeecc
Confidence 56666666 4443 22222 233344555 344456666666666777777654
No 153
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=43.84 E-value=39 Score=25.82 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=22.9
Q ss_pred ceEEEEcCCCcEEEEECCC-------CeEEEEeCCCCc
Q 014345 23 PYSVEVLPGGELLILDSAN-------SNLYRISSSLSL 53 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n-------~rI~kid~dg~~ 53 (426)
-+.+++.+||.|+++-... ..|.|++++|+.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 4688999999999887432 248888888643
No 154
>PRK04792 tolB translocation protein TolB; Provisional
Probab=43.72 E-value=4.2e+02 Score=27.99 Aligned_cols=72 Identities=11% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEEEcCCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-E-EEEEC
Q 014345 25 SVEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I-YIADT 99 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-L-YVADt 99 (426)
..++++||+ |+++.. ++..|+.++.++ +.+..+.... ......++++||. | |.++.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t---g~~~~lt~~~----------------~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIAT---KALTRITRHR----------------AIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCC---CCeEECccCC----------------CCccceEECCCCCEEEEEECC
Confidence 457888887 655432 334688888775 2333332110 0123356777776 4 34443
Q ss_pred -CCCEEEEEc-C-CCcEEE
Q 014345 100 -MNMAIRKIS-D-SGVTTI 115 (426)
Q Consensus 100 -~N~rIrk~d-~-g~VstI 115 (426)
++..|..++ + +.+..+
T Consensus 327 ~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 327 GGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCCceEEEEECCCCCEEEE
Confidence 345677777 3 335444
No 155
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=43.67 E-value=3e+02 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=13.2
Q ss_pred CCCEEEEECCCCEEEEEc
Q 014345 91 RGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 91 dG~LYVADt~N~rIrk~d 108 (426)
+|.||+.+. ++.|..++
T Consensus 335 ~g~l~v~~~-~G~l~~ld 351 (394)
T PRK11138 335 NGYLVVGDS-EGYLHWIN 351 (394)
T ss_pred CCEEEEEeC-CCEEEEEE
Confidence 578888876 56788888
No 156
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=42.74 E-value=1.9e+02 Score=32.91 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=62.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcc-eEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~-GIaVd~dG~LYVADt~ 100 (426)
.-.++++++|++++++-..+..+..++.+.+..-+...+.+. .|. .+++++.|.|.-+-..
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He------------------~Pvi~ma~~~~g~LlAtgga 125 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE------------------APVITMAFDPTGTLLATGGA 125 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC------------------CCeEEEEEcCCCceEEeccc
Confidence 456788888887666655555555666664321111111111 233 6899998877666666
Q ss_pred CCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 101 NMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 101 N~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
.++++++| +++ .-.+.|-+ |......| .|+- +-.|+++-..+++|+.+++.
T Consensus 126 D~~v~VWdi~~~~~th~fkG~g---------GvVssl~F-~~~~------~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 126 DGRVKVWDIKNGYCTHSFKGHG---------GVVSSLLF-HPHW------NRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred cceEEEEEeeCCEEEEEecCCC---------ceEEEEEe-CCcc------chhheeecCCCceEEEEEcc
Confidence 88999999 665 34455421 11111111 1111 12455666667888888876
No 157
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=41.75 E-value=3.9e+02 Score=27.06 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=14.7
Q ss_pred EEEEcCCCc-EEEEECC--CCeEEEEeCCC
Q 014345 25 SVEVLPGGE-LLILDSA--NSNLYRISSSL 51 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~~--n~rI~kid~dg 51 (426)
.+++++||. |+++... +..|+.++.++
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 456677765 5444322 33566666653
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.76 E-value=4.4e+02 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.0
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEc
Q 014345 85 GLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 85 GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
-..|.+++++++....|+.|..+.
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeeh
Confidence 356778888777777788898888
No 159
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.69 E-value=4.7e+02 Score=27.70 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=80.8
Q ss_pred ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCc--------ccccEEEecCCCCcccccCCcc
Q 014345 4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSL--------YSRPKLVAGSAEGYSGHVDGKP 75 (426)
Q Consensus 4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~--------~g~v~~vaG~~~G~~G~~dG~a 75 (426)
+..|+.+.++.....+ -.-|++..||.|+.+-....+|..+-..... .-.++.++=.+....
T Consensus 222 ~~tg~cv~t~~~h~ew---vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~------- 291 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEW---VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSY------- 291 (406)
T ss_pred cccceeEEeccCchHh---EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccC-------
Confidence 4456666665555553 3677888888887777666666666444210 001122221110000
Q ss_pred cccccCCcceEEEcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEE
Q 014345 76 REARMNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLL 152 (426)
Q Consensus 76 ~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LY 152 (426)
.+-....|.+ ..|.+.++-.....|+.++ .+. +.|+.|- .++-.+++ +.+.|..+
T Consensus 292 ~~i~~at~~~----~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-----------------dnwVr~~a-f~p~Gkyi 349 (406)
T KOG0295|consen 292 PSISEATGST----NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-----------------DNWVRGVA-FSPGGKYI 349 (406)
T ss_pred cchhhccCCC----CCccEEEeecccceEEEEeccCCeEEEEEecc-----------------cceeeeeE-EcCCCeEE
Confidence 0001111111 1234666666677788888 555 5677652 23456777 68889988
Q ss_pred EEECCCCeEEEEEcCCCceEeec
Q 014345 153 VIDRGNRAIREIQLHFDDCAYQY 175 (426)
Q Consensus 153 VaDsgN~rIr~I~l~~~~~~~~~ 175 (426)
++-.++..|++.++....|.-..
T Consensus 350 ~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred EEEecCCcEEEEEeccceeeecc
Confidence 88888999999999887776443
No 160
>PRK04922 tolB translocation protein TolB; Provisional
Probab=40.15 E-value=4.5e+02 Score=27.36 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=35.2
Q ss_pred EEEEcCCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE-EC
Q 014345 25 SVEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT 99 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA-Dt 99 (426)
..++++||+ |+++.. .+..|++++.++ +....+... .|. -..++++++|+ |+++ +.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~---g~~~~l~~~----~g~------------~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLAT---GQRELVASF----RGI------------NGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCC---CCEEEeccC----CCC------------ccCceECCCCCEEEEEEeC
Confidence 446788886 444432 335788888874 333333321 110 12357777876 4433 32
Q ss_pred -CCCEEEEEc
Q 014345 100 -MNMAIRKIS 108 (426)
Q Consensus 100 -~N~rIrk~d 108 (426)
++..|..++
T Consensus 269 ~g~~~Iy~~d 278 (433)
T PRK04922 269 DGNPEIYVMD 278 (433)
T ss_pred CCCceEEEEE
Confidence 345788777
No 161
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.57 E-value=3.5e+02 Score=29.16 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=71.0
Q ss_pred CCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 19 LGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 19 l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
++..+...+.-|||.=+|+......|..++.+|...+... |. +--.-.+|++..||.-.++-
T Consensus 311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~----------gv--------r~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE----------GV--------RDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc----------cc--------ccceeEEEEEcCCCcEEEEE
Confidence 4566788888889888888888888999998864321111 11 11123589999999744443
Q ss_pred CCCCEEEEEc-CCCcEE-EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345 99 TMNMAIRKIS-DSGVTT-IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 99 t~N~rIrk~d-~g~Vst-IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
+...+|+.++ ...+.. +.... .. -+.++ +..++.+.+.+-.++.|+-.++..
T Consensus 373 ~~d~~i~l~~~e~~~dr~lise~--------------~~---its~~-iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLISEE--------------QP---ITSFS-ISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred ecccceeeechhhhhhhcccccc--------------Cc---eeEEE-EcCCCcEEEEEcccCeeEEeecch
Confidence 3567888887 333322 21110 00 12334 567788888888888888888764
No 162
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.92 E-value=6.1e+02 Score=27.97 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=12.8
Q ss_pred CeEEEEECCCCeEEEEEcC
Q 014345 149 CSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 149 G~LYVaDsgN~rIr~I~l~ 167 (426)
.+|-+.|..++.|..+...
T Consensus 469 q~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred eeEEEEecCCCeEEEecCC
Confidence 3677777777777766543
No 163
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=36.76 E-value=98 Score=30.42 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=38.9
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEE-eCCC---CcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRI-SSSL---SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA 97 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~ki-d~dg---~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA 97 (426)
...-|..+++|-||+.+. ++++++. .+++ .+...-.++.+. -+..+.-|.+.++|+||.+
T Consensus 131 ~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~~---------------gw~~~~~i~~~~~g~L~~V 194 (229)
T PF14517_consen 131 DFDAVFAGPNGVLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGGG---------------GWDSFHFIFFSPDGNLWAV 194 (229)
T ss_dssp GEEEEEE-TTS-EEEEET-TE-EEEE---SSTT--HHHH-EEEESS---------------SGGGEEEEEE-TTS-EEEE
T ss_pred cceEEEeCCCccEEEEcC-CCceEEeCCCCCCCCccccccceeccC---------------CcccceEEeeCCCCcEEEE
Confidence 456778889999999985 4477777 3332 111111222222 1444788999999999999
Q ss_pred ECCCCEEEEEc
Q 014345 98 DTMNMAIRKIS 108 (426)
Q Consensus 98 Dt~N~rIrk~d 108 (426)
|. |+.|.+-.
T Consensus 195 ~~-~G~lyr~~ 204 (229)
T PF14517_consen 195 KS-NGKLYRGR 204 (229)
T ss_dssp -E-TTEEEEES
T ss_pred ec-CCEEeccC
Confidence 65 67887665
No 164
>PRK00178 tolB translocation protein TolB; Provisional
Probab=36.56 E-value=4.9e+02 Score=26.77 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=38.5
Q ss_pred eEEEEcCCCc-E-EEEEC-CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEE-EE
Q 014345 24 YSVEVLPGGE-L-LILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI-AD 98 (426)
Q Consensus 24 ~GIaVd~dG~-L-YVaD~-~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYV-AD 98 (426)
...++++||+ | |+++. .+..|++++.++ +....+... .|. -...++.++|+ |++ ++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---g~~~~l~~~----~g~------------~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---GRREQITNF----EGL------------NGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCC---CCEEEccCC----CCC------------cCCeEECCCCCEEEEEEc
Confidence 4557888886 4 44433 235788888874 333333211 010 11356777775 443 33
Q ss_pred -CCCCEEEEEc-CCC-cEEEe
Q 014345 99 -TMNMAIRKIS-DSG-VTTIA 116 (426)
Q Consensus 99 -t~N~rIrk~d-~g~-VstIa 116 (426)
.++..|..++ +++ ...+.
T Consensus 263 ~~g~~~Iy~~d~~~~~~~~lt 283 (430)
T PRK00178 263 KDGNPEIYVMDLASRQLSRVT 283 (430)
T ss_pred cCCCceEEEEECCCCCeEEcc
Confidence 2345777777 333 44443
No 165
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=36.46 E-value=4.6e+02 Score=26.53 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=38.6
Q ss_pred EcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEEE
Q 014345 28 VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKI 107 (426)
Q Consensus 28 Vd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~ 107 (426)
++.+|.+|+. ..+++|..++.++. +....... . + ....++.|..+. +|+|||.+.. ..+..+
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g---~~~W~~~~----~----~--~~~~~~~~~~~~---~G~i~~g~~~-g~~y~l 126 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTG---LVKWSYPL----L----G--AVAQLSGPILGS---DGKIYVGSWD-GKLYAL 126 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCC---cEEecccC----c----C--cceeccCceEEe---CCeEEEeccc-ceEEEE
Confidence 6668899998 35668999998853 32221100 0 0 012355554433 7899999875 478888
Q ss_pred cC
Q 014345 108 SD 109 (426)
Q Consensus 108 d~ 109 (426)
|.
T Consensus 127 d~ 128 (370)
T COG1520 127 DA 128 (370)
T ss_pred EC
Confidence 83
No 166
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=36.43 E-value=40 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.4
Q ss_pred CcceEEEcCCCCEEEEE
Q 014345 82 HPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 82 ~P~GIaVd~dG~LYVAD 98 (426)
.-..|+.|++|+|||+-
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 35689999999999985
No 167
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.12 E-value=1.7e+02 Score=31.40 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.4
Q ss_pred CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCc
Q 014345 22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGY 67 (426)
Q Consensus 22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~ 67 (426)
+-++|..++ +++|+|+-...+.|++|+..+ +.+..++|...+.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t---~~i~Wilg~~~~w 315 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRT---GKIKWILGPPGGW 315 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TT---S-EEEEES-STT-
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCC---CcEEEEeCCCCCC
Confidence 567889888 788999988888999999553 6788888876443
No 168
>PRK04043 tolB translocation protein TolB; Provisional
Probab=36.02 E-value=5.4e+02 Score=27.08 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=20.8
Q ss_pred EEEcCCCc--EEEEECC--CCeEEEEeCCCCcccccEEEe
Q 014345 26 VEVLPGGE--LLILDSA--NSNLYRISSSLSLYSRPKLVA 61 (426)
Q Consensus 26 IaVd~dG~--LYVaD~~--n~rI~kid~dg~~~g~v~~va 61 (426)
-..++||+ +|++... +..|++++..+ |+...+.
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---g~~~~lt 229 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYT---GKKEKIA 229 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCC---CcEEEEe
Confidence 36778885 5655543 46788888875 4444443
No 169
>PRK03629 tolB translocation protein TolB; Provisional
Probab=35.85 E-value=5.3e+02 Score=26.94 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=40.7
Q ss_pred EEEEcCCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-E-EEEEC
Q 014345 25 SVEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I-YIADT 99 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-L-YVADt 99 (426)
.++++|||. |+++.. ++.+|+.++.++ +.+..+.... ......++.++|+ | |++|.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---g~~~~lt~~~----------------~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEccCCC----------------CCcCceEECCCCCEEEEEeCC
Confidence 468899997 555432 334788888875 2333332110 0123467888887 3 55554
Q ss_pred C-CCEEEEEc-CCC-cEEE
Q 014345 100 M-NMAIRKIS-DSG-VTTI 115 (426)
Q Consensus 100 ~-N~rIrk~d-~g~-VstI 115 (426)
. ...|..++ +++ +..+
T Consensus 308 ~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CCCceEEEEECCCCCeEEe
Confidence 3 34777777 443 4444
No 170
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=35.27 E-value=4e+02 Score=29.12 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=48.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-++|+...+|+++++-..++.++.++.+|.+ +.++ +. ..|+ -..|-...+|+.+++-.-.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---~~tl-~~-------HkgP--------I~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---ISTL-GQ-------HKGP--------IFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh---hhhh-hc-------cCCc--------eEEEEEcCCCCEEEeccCC
Confidence 56789999999999999999999999998643 2222 11 1221 1234455567666666666
Q ss_pred CEEEEEc--CCCcE
Q 014345 102 MAIRKIS--DSGVT 113 (426)
Q Consensus 102 ~rIrk~d--~g~Vs 113 (426)
+++..+| .+.+.
T Consensus 298 ~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 298 GTTILWDAHTGTVK 311 (524)
T ss_pred ccEEEEeccCceEE
Confidence 7777777 34443
No 171
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=34.91 E-value=2e+02 Score=29.09 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=48.1
Q ss_pred CceEEE---EcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345 22 EPYSVE---VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 22 ~P~GIa---Vd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD 98 (426)
-|+.|. +.|+-++|||.-....++|+|.+++. .+... . .|. +.--..|.+.++|.+|.+-
T Consensus 223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--Ei~~~-n--kgh------------~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--EIGSY-N--KGH------------FGPVHCVRFSPDGELYASG 285 (334)
T ss_pred CccccccccccCCCceEEecCcceEEEEEeccCCc--eeeec-c--cCC------------CCceEEEEECCCCceeecc
Confidence 466655 45677899999888899999998532 11111 0 121 2223579999999999998
Q ss_pred CCCCEEEEEc
Q 014345 99 TMNMAIRKIS 108 (426)
Q Consensus 99 t~N~rIrk~d 108 (426)
+..+.||.+.
T Consensus 286 SEDGTirlWQ 295 (334)
T KOG0278|consen 286 SEDGTIRLWQ 295 (334)
T ss_pred CCCceEEEEE
Confidence 8777777665
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=34.37 E-value=77 Score=32.12 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=43.4
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA 160 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r 160 (426)
.|+.+-+|++|+.+-.+.+|||+++ +.. ...+.-- . ..-++++| .+++.|.-+-....|
T Consensus 255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH---s--------------agvn~vAf-spd~~lmAaaskD~r 316 (323)
T KOG0322|consen 255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH---S--------------AGVNAVAF-SPDCELMAAASKDAR 316 (323)
T ss_pred cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh---h--------------cceeEEEe-CCCCchhhhccCCce
Confidence 4899999999999999999999999 333 2233221 1 02356774 666777777766777
Q ss_pred EEEEE
Q 014345 161 IREIQ 165 (426)
Q Consensus 161 Ir~I~ 165 (426)
|--.+
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 65443
No 173
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.22 E-value=5.7e+02 Score=30.33 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=73.6
Q ss_pred EEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc
Q 014345 10 VETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD 89 (426)
Q Consensus 10 v~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd 89 (426)
|.-+.+|..-+ -+-+|+.|.-.|+|+......|..+..+-+ +..-+ +.+.|+ +|.-.++.++
T Consensus 198 VK~VLEGHDRG--VNwaAfhpTlpliVSG~DDRqVKlWrmnet---KaWEv----DtcrgH---------~nnVssvlfh 259 (1202)
T KOG0292|consen 198 VKHVLEGHDRG--VNWAAFHPTLPLIVSGADDRQVKLWRMNET---KAWEV----DTCRGH---------YNNVSSVLFH 259 (1202)
T ss_pred eeeeecccccc--cceEEecCCcceEEecCCcceeeEEEeccc---cceee----hhhhcc---------cCCcceEEec
Confidence 44455555533 345677776678887765554444443321 11111 123444 6667889999
Q ss_pred CCCCEEEEECCCCEEEEEc-C-CC-cEEE----------eCCcc--CCCCCCCCCCcccccCC-CCCeeEEECCCCeEEE
Q 014345 90 DRGNIYIADTMNMAIRKIS-D-SG-VTTI----------AGGKW--GRGGGHVDGPSEDAKFS-NDFDVVYIGSSCSLLV 153 (426)
Q Consensus 90 ~dG~LYVADt~N~rIrk~d-~-g~-VstI----------aGg~~--g~~~G~~dG~~~~a~f~-~P~gIa~vd~~G~LYV 153 (426)
+.-+++++......||++| + .+ +.+. +.-+. =...|+++|... -++. .+-..| +..++.+||
T Consensus 260 p~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V-FkleRErpa~~-v~~n~LfYv 337 (1202)
T KOG0292|consen 260 PHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV-FKLERERPAYA-VNGNGLFYV 337 (1202)
T ss_pred CccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE-EEEcccCceEE-EcCCEEEEE
Confidence 8889999999888899888 2 22 4443 11100 012344444211 1122 344444 555555666
Q ss_pred EECCCCeEEEEEcCC
Q 014345 154 IDRGNRAIREIQLHF 168 (426)
Q Consensus 154 aDsgN~rIr~I~l~~ 168 (426)
-| ..|+.+++..
T Consensus 338 kd---~~i~~~d~~t 349 (1202)
T KOG0292|consen 338 KD---RFIRSYDLRT 349 (1202)
T ss_pred cc---ceEEeeeccc
Confidence 64 4677777654
No 174
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=32.00 E-value=5.7e+02 Score=26.09 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=42.6
Q ss_pred CCCeeEEECCCCeEEEEECCCCeEEEEEcCC-----------CceEeecCCCCcce--EEEEecCCceE----------E
Q 014345 138 NDFDVVYIGSSCSLLVIDRGNRAIREIQLHF-----------DDCAYQYGSSFPLG--IAVLLAAGFFG----------Y 194 (426)
Q Consensus 138 ~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~-----------~~~~~~~~~g~P~G--IAv~~g~g~~G----------y 194 (426)
.-+.++ ...+++++|...|+++|..+.-.. ..|..... .|.| +|+..+..+.- -
T Consensus 149 e~ne~~-w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f--~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 149 EVNEIS-WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEF--DPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred eeeeee-ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEE--CCCCceEeeccccceeeccChhHhhhhe
Confidence 446677 457789999999999998887443 22222111 1444 33332222211 1
Q ss_pred EEEEEecccceeeeccCC
Q 014345 195 MLALLQRRVGTIVSSQND 212 (426)
Q Consensus 195 ~~a~lq~~~g~~~~s~~~ 212 (426)
++.-|-|++..+.||...
T Consensus 226 ~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDG 243 (313)
T ss_pred eeccccCceEEEEeccCc
Confidence 345678888888888765
No 175
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.99 E-value=5.8e+02 Score=26.20 Aligned_cols=79 Identities=9% Similarity=0.033 Sum_probs=43.6
Q ss_pred CcceEEEcCCCCEEEEECCCCE-------EEEEcCCC-cEEEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCC-eE
Q 014345 82 HPKGLTVDDRGNIYIADTMNMA-------IRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSC-SL 151 (426)
Q Consensus 82 ~P~GIaVd~dG~LYVADt~N~r-------Irk~d~g~-VstIaGg~~g~~~G~~dG~~~~a~f-~~P~gIa~vd~~G-~L 151 (426)
+-+=|+++.+|.++++--+... |-..+.++ +..+.... ..-..| .+--+||+ +.++ .+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~-----------~~~~~l~~Y~gSIa~-~~~g~~i 231 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE-----------EQWRRLNGYIGSIAA-DRDGRLI 231 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCCh-----------HHHHhhCCceEEEEE-eCCCCEE
Confidence 4567899999999888643211 11222222 21111100 000112 34457774 5555 67
Q ss_pred EEEECCCCeEEEEEcCCCceE
Q 014345 152 LVIDRGNRAIREIQLHFDDCA 172 (426)
Q Consensus 152 YVaDsgN~rIr~I~l~~~~~~ 172 (426)
.++-...+++..++.....+.
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEECCCCCEEEEEECCCCCEe
Confidence 788888999999987765444
No 176
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.70 E-value=5.8e+02 Score=27.20 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=44.9
Q ss_pred CCceEEEEcCC--CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345 21 IEPYSVEVLPG--GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA 97 (426)
Q Consensus 21 ~~P~GIaVd~d--G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA 97 (426)
..+.+|.+-+. ..-+++-+.-|.++.+|.... .+.|+--.... +.-..++.+++|+ ||++
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q----RRPV~~fd~~E-------------~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ----RRPVAQFDFLE-------------NPISSTGLTPSGNFIYTG 265 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCccc----CcceeEecccc-------------CcceeeeecCCCcEEEEe
Confidence 35667777654 567888888899999988732 23333221010 1124577778887 8888
Q ss_pred ECCCCEEEEEc
Q 014345 98 DTMNMAIRKIS 108 (426)
Q Consensus 98 Dt~N~rIrk~d 108 (426)
|+ ...+-.||
T Consensus 266 n~-~g~l~~FD 275 (412)
T KOG3881|consen 266 NT-KGQLAKFD 275 (412)
T ss_pred cc-cchhheec
Confidence 87 46788888
No 177
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=31.55 E-value=5.7e+02 Score=26.00 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCC
Q 014345 7 GYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSS 50 (426)
Q Consensus 7 G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~d 50 (426)
|.+.+.+.....+...|.+|....++.++++. ..+.|++-...
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~Dg 132 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDG 132 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESST
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCC
Confidence 55566655444444467777766666666554 34677775443
No 178
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=30.67 E-value=5.8e+02 Score=25.78 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=34.5
Q ss_pred EEEEcCCCc-EEEEECC--CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC-
Q 014345 25 SVEVLPGGE-LLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT- 99 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~~--n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt- 99 (426)
..++++||. |+++... .+.|++++..+ +....+... .+ ....+++.++|+ |+++..
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---g~~~~~~~~--------~~--------~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLAT---GQREKVASF--------PG--------MNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEeecC--------CC--------CccceEECCCCCEEEEEECC
Confidence 346777887 4444332 25788887764 223333211 01 112367788876 655433
Q ss_pred -CCCEEEEEc
Q 014345 100 -MNMAIRKIS 108 (426)
Q Consensus 100 -~N~rIrk~d 108 (426)
++..|..++
T Consensus 255 ~~~~~i~~~d 264 (417)
T TIGR02800 255 DGNPDIYVMD 264 (417)
T ss_pred CCCccEEEEE
Confidence 244677777
No 179
>PRK02889 tolB translocation protein TolB; Provisional
Probab=30.54 E-value=6.4e+02 Score=26.25 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=35.8
Q ss_pred EEEEcCCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE-E-
Q 014345 25 SVEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-D- 98 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA-D- 98 (426)
..+++|||+ |+++.. .+..|+.++..+ ++...+.... |. -...++.+||+ |+++ +
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---g~~~~l~~~~----g~------------~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLAT---GRRRVVANFK----GS------------NSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCC---CCEEEeecCC----CC------------ccceEECCCCCEEEEEEcc
Confidence 457888886 444432 235688888875 3333333211 10 12467778875 4433 2
Q ss_pred CCCCEEEEEc
Q 014345 99 TMNMAIRKIS 108 (426)
Q Consensus 99 t~N~rIrk~d 108 (426)
.++..|..++
T Consensus 261 ~g~~~Iy~~d 270 (427)
T PRK02889 261 DGNSQIYTVN 270 (427)
T ss_pred CCCceEEEEE
Confidence 3455677777
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=29.88 E-value=5.7e+02 Score=27.42 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=27.5
Q ss_pred CcceEEEcCCCCEEEEECCCCEEEEEc--CCCcEEEeC
Q 014345 82 HPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAG 117 (426)
Q Consensus 82 ~P~GIaVd~dG~LYVADt~N~rIrk~d--~g~VstIaG 117 (426)
.+..++..++++..++-+..+.++.+| .|.+..+.+
T Consensus 125 diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred chhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 467888889999999988888888888 444544443
No 181
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.86 E-value=6.2e+02 Score=29.32 Aligned_cols=111 Identities=13% Similarity=0.227 Sum_probs=70.2
Q ss_pred eEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCE
Q 014345 24 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 103 (426)
Q Consensus 24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~r 103 (426)
.++.+++|+.+.|+-+...+|..+..+- |.-. ....++.| .-..|.+-|+..+|++-...+.
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdF---GDCH------KS~fAHdD---------Svm~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDF---GDCH------KSFFAHDD---------SVMSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEecccc---chhh------hhhhcccC---------ceeEEEEcccceeEEEecCcce
Confidence 3556666777777766666666665551 1100 01122211 1245677787788888888888
Q ss_pred EEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345 104 IRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD 170 (426)
Q Consensus 104 Irk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~ 170 (426)
|..+|... +.++-| ....-++++ +.++|...|+-+..+.||.+....+.
T Consensus 616 vKqWDg~kFe~iq~L~~-----------------H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 616 VKQWDGEKFEEIQKLDG-----------------HHSEVWCLA-VSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred EEeechhhhhhheeecc-----------------chheeeeeE-EcCCCCeEEeccCCceeEeeeccCcc
Confidence 88888333 455543 233457888 78899999999888999988866533
No 182
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=29.65 E-value=6.7e+02 Score=27.38 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=15.4
Q ss_pred ECCCCeEEEEECCCCeEEEEEcC
Q 014345 145 IGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 145 vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
...++.++-+-+..+-|..++.+
T Consensus 395 ~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 395 ISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ecCCCceEEeccCcceEEEeccc
Confidence 55667766666667777777654
No 183
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.37 E-value=5.6e+02 Score=25.23 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=42.2
Q ss_pred EEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC--EEEEECCC-
Q 014345 25 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN--IYIADTMN- 101 (426)
Q Consensus 25 GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~--LYVADt~N- 101 (426)
|.+| -+|.||.--....+|.|++...........+-+.. .. +-......=..=-++|+|..|. ||.+...+
T Consensus 73 G~vV-YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~--~~---n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 73 GHVV-YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAG--YN---NRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred CeEE-ECCcEEEEecCCceEEEEECcCCcEEEEEECCccc--cc---cccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 3444 47889998888899999999864322112222211 10 0000000000113789997775 55555443
Q ss_pred -CEEEEEcCCC
Q 014345 102 -MAIRKISDSG 111 (426)
Q Consensus 102 -~rIrk~d~g~ 111 (426)
-.|-++|...
T Consensus 147 ~ivvskld~~t 157 (250)
T PF02191_consen 147 NIVVSKLDPET 157 (250)
T ss_pred cEEEEeeCccc
Confidence 4555777443
No 184
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.31 E-value=2.6e+02 Score=27.65 Aligned_cols=62 Identities=10% Similarity=-0.021 Sum_probs=35.2
Q ss_pred CCCEEEEEc--CCCcEEEeCC-ccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345 100 MNMAIRKIS--DSGVTTIAGG-KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL 166 (426)
Q Consensus 100 ~N~rIrk~d--~g~VstIaGg-~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l 166 (426)
...+|.+|+ .|.|.....- ..-. .-.......+-++|||+++..+++||+--.=-.+..+.+
T Consensus 194 ~t~~I~rI~p~sGrV~~widlS~L~~-----~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 194 QTTRIARIDPDSGRVVAWIDLSGLLK-----ELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred eecceEEEcCCCCcEEEEEEccCCch-----hcCccccccccccceeecCcCCeEEEecCcCceeEEEEe
Confidence 346788888 4555433321 0000 001122235678999988878899998765455555544
No 185
>PRK05137 tolB translocation protein TolB; Provisional
Probab=29.21 E-value=6.7e+02 Score=26.06 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=37.4
Q ss_pred EEEEcCCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-E-EEEEC
Q 014345 25 SVEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I-YIADT 99 (426)
Q Consensus 25 GIaVd~dG~-LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-L-YVADt 99 (426)
+.++++||. |+++-. ++..|+.++.++. .+..+.... + .....++++||+ | |++|.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~Lt~~~----~------------~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSG---TTTRLTDSP----A------------IDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCC---ceEEccCCC----C------------ccCceeEcCCCCEEEEEECC
Confidence 457788886 444322 3356888887642 333332110 0 012356777776 3 34443
Q ss_pred -CCCEEEEEc-CCC-cEEEe
Q 014345 100 -MNMAIRKIS-DSG-VTTIA 116 (426)
Q Consensus 100 -~N~rIrk~d-~g~-VstIa 116 (426)
+...|..++ +++ +..+.
T Consensus 311 ~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 311 SGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCCCeEEEEECCCCCeEEee
Confidence 234677777 443 54443
No 186
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=28.56 E-value=6.8e+02 Score=25.93 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=49.1
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
-+-+.++|+|..+++-...+.|+-+.-.+.. .+..+.- |..|- --++....+++..++-....
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lk----gHsgA------------VM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLK----GHSGA------------VMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeec----cccce------------eEeeeeccCCCEEEEecCCc
Confidence 4567788999999988888888888765433 1222222 22221 24677778899888887788
Q ss_pred EEEEEc--CCC
Q 014345 103 AIRKIS--DSG 111 (426)
Q Consensus 103 rIrk~d--~g~ 111 (426)
+|+.+| .|.
T Consensus 113 ~v~~wD~~tG~ 123 (338)
T KOG0265|consen 113 TVRGWDAETGK 123 (338)
T ss_pred eEEEEecccce
Confidence 999999 444
No 187
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=28.55 E-value=2.3e+02 Score=31.22 Aligned_cols=66 Identities=8% Similarity=0.121 Sum_probs=48.3
Q ss_pred ceEEEcCC-CCEEEEECCCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345 84 KGLTVDDR-GNIYIADTMNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR 159 (426)
Q Consensus 84 ~GIaVd~d-G~LYVADt~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~ 159 (426)
.|||+.+. ..|+|+=.+..+|..+|.+. +.+++. ..|..-+.+.++|.++++...++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------------------~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-------------------SHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeee-------------------cCCcceeeecCCceEEEeecCCc
Confidence 49999985 46888888889999999432 344442 13333333678899999999999
Q ss_pred eEEEEEcCC
Q 014345 160 AIREIQLHF 168 (426)
Q Consensus 160 rIr~I~l~~ 168 (426)
+|..+|+..
T Consensus 273 ~~i~YD~R~ 281 (673)
T KOG4378|consen 273 ELIAYDMRS 281 (673)
T ss_pred eEEEEeccc
Confidence 999999765
No 188
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=28.36 E-value=3.6e+02 Score=22.61 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=32.9
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI 161 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI 161 (426)
+.-+.+..+|+|++.|..+..|+.=+.. .+ ..+..+. +.++|+|.+.|..+..|
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~------~~------------------~~~~~~~-L~ddGnlvl~~~~~~~~ 108 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT------GA------------------NGNYVLV-LLDDGNLVIYDSDGNFL 108 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc------CC------------------CCceEEE-EeCCCCEEEECCCCCEE
Confidence 4568888899999998765444432111 00 0123334 67889999988755433
No 189
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.72 E-value=9.6e+02 Score=27.38 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=59.2
Q ss_pred CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345 21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~ 100 (426)
.+|.-++.+|+|.+.++- +++.-+.++.-+ - ++..|..-...+...+-+.|+.-..
T Consensus 352 iyPq~L~hsPNGrfV~Vc-gdGEyiIyTala-----------~------------RnK~fG~~~eFvw~~dsne~avRes 407 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVC-GDGEYIIYTALA-----------L------------RNKAFGSGLEFVWAADSNEFAVRES 407 (794)
T ss_pred cchHHhccCCCCcEEEEe-cCccEEEEEeee-----------h------------hhcccccceeEEEcCCCCeEEEEec
Confidence 468888888888765543 344433443321 0 0011222234555566566666655
Q ss_pred CCEEEEEcCCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC-eEEEEEcCCCce
Q 014345 101 NMAIRKISDSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR-AIREIQLHFDDC 171 (426)
Q Consensus 101 N~rIrk~d~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~-rIr~I~l~~~~~ 171 (426)
|+.|..+.+... ..+--. .. ...+..+.-|. +.+++.|.+-|+.++ .||+|+....+.
T Consensus 408 ~~~vki~knfke~ksi~~~-~~-----------~e~i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~v~~k~v 467 (794)
T KOG0276|consen 408 NGNVKIFKNFKEHKSIRPD-MS-----------AEGIFGGPLLG-VRSSDFLCFYDWESGELVRRIEVTSKHV 467 (794)
T ss_pred CCceEEEecceeccccccc-cc-----------eeeecCCceEE-EEeCCeEEEEEcccceEEEEEeecccee
Confidence 666666643332 121110 00 11233444555 567789999997665 468888765443
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=27.27 E-value=5.1e+02 Score=24.02 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=53.5
Q ss_pred ceEEEEcCCCc-EEEE-ECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE-EC
Q 014345 23 PYSVEVLPGGE-LLIL-DSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA-DT 99 (426)
Q Consensus 23 P~GIaVd~dG~-LYVa-D~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA-Dt 99 (426)
-+.++..|+|+ +.|+ .....+|..++.++. .+..+ +. ...+.|+.+|+|++.++ ..
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~---~i~~~-~~-----------------~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK---KIFSF-GT-----------------QPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCccc---EeEee-cC-----------------CCceEEEECCCCCEEEEEEc
Confidence 57888888877 4333 223447777777531 11111 11 11356999999985554 43
Q ss_pred C--CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345 100 M--NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR 156 (426)
Q Consensus 100 ~--N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs 156 (426)
+ ++.|..+|......+.-... .....++ .+++|+.+++-.
T Consensus 121 ~n~~G~l~~wd~~~~~~i~~~~~----------------~~~t~~~-WsPdGr~~~ta~ 162 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKISTFEH----------------SDATDVE-WSPDGRYLATAT 162 (194)
T ss_pred cCCCcEEEEEECCCCEEeecccc----------------CcEEEEE-EcCCCCEEEEEE
Confidence 3 45788888545444432110 0135666 678887666543
No 191
>PRK01029 tolB translocation protein TolB; Provisional
Probab=27.05 E-value=7.5e+02 Score=25.95 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=37.5
Q ss_pred EEEEcCCCc-EE-EEEC-CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE-EC
Q 014345 25 SVEVLPGGE-LL-ILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA-DT 99 (426)
Q Consensus 25 GIaVd~dG~-LY-VaD~-~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA-Dt 99 (426)
..++++||. |+ ++|. +..+|++++.++.- +....+.... ..-...++.+||+ |+++ +.
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~----------------~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKY----------------RNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCC----------------CCccceeECCCCCEEEEEEcC
Confidence 458889987 44 4443 23467777654210 1222221110 0112356788886 4333 32
Q ss_pred -CCCEEEEEc-CCC-cEEEe
Q 014345 100 -MNMAIRKIS-DSG-VTTIA 116 (426)
Q Consensus 100 -~N~rIrk~d-~g~-VstIa 116 (426)
+...|.+++ .++ ...+.
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt 367 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLT 367 (428)
T ss_pred CCCcEEEEEECCCCCeEEcc
Confidence 245788888 333 44443
No 192
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.02 E-value=7.3e+02 Score=25.76 Aligned_cols=38 Identities=0% Similarity=-0.252 Sum_probs=26.7
Q ss_pred CCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec
Q 014345 138 NDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY 175 (426)
Q Consensus 138 ~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~ 175 (426)
+--.|+.-+.++.+-++....|+...++.....+....
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 44566766667888888888888888887766554433
No 193
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=26.97 E-value=4.3e+02 Score=26.94 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCC
Q 014345 6 SGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSS 50 (426)
Q Consensus 6 ~G~tv~tv~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~d 50 (426)
.|+..........+...-.|+.+|. -|.||+++ .+-.|+|+..+
T Consensus 190 nGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIae-EdvaiWK~~Ae 234 (364)
T COG4247 190 NGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAE-EDVAIWKYEAE 234 (364)
T ss_pred CceEcceeeEeeecCCcccceeeccccceEEEee-ccceeeecccC
Confidence 4555455555555555677888876 69999998 46689999776
No 194
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=26.67 E-value=7e+02 Score=25.46 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=45.7
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR 159 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~ 159 (426)
-+-++...++++||.-++++.|.++. . -. +.+|..-. +.-.+|. ++++|.-+-+-+...
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-----------------snCicI~-f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-----------------SNCICIE-FDPDGRYFATGSADA 211 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC-----------------cceEEEE-ECCCCceEeeccccc
Confidence 45678888899999999999999998 2 22 44443211 1234566 577777666665555
Q ss_pred eEEEEEcCCCce
Q 014345 160 AIREIQLHFDDC 171 (426)
Q Consensus 160 rIr~I~l~~~~~ 171 (426)
.+.-.+++.-.|
T Consensus 212 lvSLWD~~ELiC 223 (313)
T KOG1407|consen 212 LVSLWDVDELIC 223 (313)
T ss_pred eeeccChhHhhh
Confidence 665556555444
No 195
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=26.39 E-value=3.2e+02 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=17.2
Q ss_pred cceEEEcCCCCEEEEECCCCEEE
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIR 105 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIr 105 (426)
+.-+.+..+|+|++.|..+..|+
T Consensus 56 ~~~l~l~~dGnLvl~~~~g~~vW 78 (116)
T cd00028 56 SCTLTLQSDGNLVIYDGSGTVVW 78 (116)
T ss_pred CEEEEEecCCCeEEEcCCCcEEE
Confidence 45688888999999987554443
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=26.17 E-value=7.6e+02 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=15.4
Q ss_pred ceEEEcCCCC-EEE-EEC-CCCEEEEEc
Q 014345 84 KGLTVDDRGN-IYI-ADT-MNMAIRKIS 108 (426)
Q Consensus 84 ~GIaVd~dG~-LYV-ADt-~N~rIrk~d 108 (426)
...++++||. |++ +|. ++-+|+.++
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 3567888887 443 443 345677776
No 197
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=26.16 E-value=5.3e+02 Score=27.76 Aligned_cols=78 Identities=9% Similarity=0.199 Sum_probs=49.2
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-.++|++++...|++-+..++|..++..-. -.-+.+.|. |. -++.+...+.-.|+++-...
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~--kee~vL~GH--gw--------------dVksvdWHP~kgLiasgskD 243 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP--KEERVLRGH--GW--------------DVKSVDWHPTKGLIASGSKD 243 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCC--chhheeccC--CC--------------CcceeccCCccceeEEccCC
Confidence 4578999998889999989999998876421 111233333 11 25667777765555555555
Q ss_pred CEEEEEc--CCC-cEEEeC
Q 014345 102 MAIRKIS--DSG-VTTIAG 117 (426)
Q Consensus 102 ~rIrk~d--~g~-VstIaG 117 (426)
+-|..+| .|. +.++.+
T Consensus 244 nlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred ceeEeecCCCcchhhhhhh
Confidence 5777888 333 555555
No 198
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=25.85 E-value=3.4e+02 Score=23.12 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=34.3
Q ss_pred ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345 23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM 102 (426)
Q Consensus 23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~ 102 (426)
.+-+.+..||+|.+.|.. +++ .+..+. ..|. -..+.-+.+..+|+|.+-|..+.
T Consensus 20 ~~~L~l~~dGnLvl~~~~-~~~-iWss~~--------t~~~----------------~~~~~~~~L~~~GNlvl~d~~~~ 73 (114)
T PF01453_consen 20 NYTLILQSDGNLVLYDSN-GSV-IWSSNN--------TSGR----------------GNSGCYLVLQDDGNLVLYDSSGN 73 (114)
T ss_dssp TEEEEEETTSEEEEEETT-TEE-EEE--S---------TTS----------------S-SSEEEEEETTSEEEEEETTSE
T ss_pred cccceECCCCeEEEEcCC-CCE-EEEecc--------cCCc----------------cccCeEEEEeCCCCEEEEeecce
Confidence 466788889999888865 344 333310 0000 00245578888999999996544
Q ss_pred EEEE
Q 014345 103 AIRK 106 (426)
Q Consensus 103 rIrk 106 (426)
.|+.
T Consensus 74 ~lW~ 77 (114)
T PF01453_consen 74 VLWQ 77 (114)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 199
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=24.89 E-value=1.2e+03 Score=27.45 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=60.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccC-CcceEEEcCCCCEEEEECC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN-HPKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln-~P~GIaVd~dG~LYVADt~ 100 (426)
.-.||++|.-+.+.|+-...+-+.-++.+.. + +.+. -++. .+.++.....-.+++.-..
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k----~--l~~~--------------l~l~~~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKK----V--LKKS--------------LRLGSSITGIVYHRVSDLLAIALD 554 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCc----c--eeee--------------eccCCCcceeeeeehhhhhhhhcC
Confidence 3568999988888887765555555565521 1 1111 0011 1344555444444444444
Q ss_pred CCEEEEEcCCC--c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 101 NMAIRKISDSG--V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 101 N~rIrk~d~g~--V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
...|+.+|..+ | ..+.|- . +.-++++| .++|.-+|+-+-...||.+|+....+
T Consensus 555 df~I~vvD~~t~kvvR~f~gh-~----------------nritd~~F-S~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFWGH-G----------------NRITDMTF-SPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred ceeEEEEEchhhhhhHHhhcc-c----------------cceeeeEe-CCCCcEEEEeecCCcEEEEeccCcce
Confidence 56788888432 2 333331 0 12356774 56665444444468999999876444
No 200
>PRK00178 tolB translocation protein TolB; Provisional
Probab=24.73 E-value=7.8e+02 Score=25.31 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=17.1
Q ss_pred EEEEcCCCc-EEEE-E-CCCCeEEEEeCCC
Q 014345 25 SVEVLPGGE-LLIL-D-SANSNLYRISSSL 51 (426)
Q Consensus 25 GIaVd~dG~-LYVa-D-~~n~rI~kid~dg 51 (426)
..++++||+ |+++ + .++..|++++.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 467888886 4433 2 2334788888775
No 201
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.68 E-value=1e+03 Score=27.31 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=69.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC--CEEEEEC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG--NIYIADT 99 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG--~LYVADt 99 (426)
.-+.|+..|||...|..+.++.++.++..+..+..-..+.-. .++ .++=..-+|+-+.+.- .|.|+-.
T Consensus 453 lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~--------~~K--k~~~~rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH--------NKK--KKQGKRITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec--------cCc--cccCceeeeeEecCCCCCeEEEecC
Confidence 467899999999999999999999998875432211112111 011 0011134677776522 4777654
Q ss_pred CCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345 100 MNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF 168 (426)
Q Consensus 100 ~N~rIrk~d~--g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~ 168 (426)
..|||++|- .. +..+.|-... +....-. ...+|.-+|+-...+-|+..+...
T Consensus 523 -DSrIRI~d~~~~~lv~KfKG~~n~---------------~SQ~~As-fs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 523 -DSRIRIYDGRDKDLVHKFKGFRNT---------------SSQISAS-FSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -CCceEEEeccchhhhhhhcccccC---------------Ccceeee-EccCCCEEEEeecCceEEEEeCCC
Confidence 689999994 33 3444442111 1112222 345777777777778887777643
No 202
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=24.44 E-value=8.4e+02 Score=25.64 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=21.5
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISS 49 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~ 49 (426)
..+.|++++||+-++|- .+..|.+|+.
T Consensus 160 aAhsL~Fs~DGeqlfaG-ykrcirvFdt 186 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAG-YKRCIRVFDT 186 (406)
T ss_pred hheeEEecCCCCeEeec-ccceEEEeec
Confidence 46789999999977776 3668888876
No 203
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=23.86 E-value=7.1e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=20.4
Q ss_pred CCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345 136 FSNDFDVVYIGSSCSLLVIDRGNRAIREIQ 165 (426)
Q Consensus 136 f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~ 165 (426)
+.....|.+-+.+..||+=|.+...+..+.
T Consensus 218 ~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~ 247 (250)
T PF02191_consen 218 YGNISMLSYNPRDKKLYAWDNGYQVTYDVR 247 (250)
T ss_pred cCceEeeeECCCCCeEEEEECCeEEEEEEE
Confidence 344566777788889999996655444443
No 204
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.59 E-value=8.4e+02 Score=27.78 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=49.8
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN 101 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N 101 (426)
.-+.+|..+.|.++|+...++.|+.+|+... .++.-+.|.. + .-+.|.+++||+=.++-+..
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~kimkLrGHT-------d---------NVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--KKIMKLRGHT-------D---------NVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccc--cceeeeeccc-------c---------ceEEEEEcCCCCeEeecCCC
Confidence 3467788778888888877777888888743 2333333331 2 24678889999888888888
Q ss_pred CEEEEEcCC
Q 014345 102 MAIRKISDS 110 (426)
Q Consensus 102 ~rIrk~d~g 110 (426)
+.|+.++-|
T Consensus 235 gtIrlWdLg 243 (735)
T KOG0308|consen 235 GTIRLWDLG 243 (735)
T ss_pred ceEEeeecc
Confidence 999999843
No 205
>PTZ00486 apyrase Superfamily; Provisional
Probab=23.06 E-value=7.3e+02 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecC
Q 014345 31 GGELLILDSANSNLYRISSSLSLYSRPKLVAGS 63 (426)
Q Consensus 31 dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~ 63 (426)
+|.||..|-..+-|++++.++.. -.++.+.-.
T Consensus 124 ngkLys~DDrTGiVy~i~~~~~~-~~PwvIL~d 155 (352)
T PTZ00486 124 NGKLYGFDDRTGIVYEIDIDKKK-AYPRHILSD 155 (352)
T ss_pred CCEEEEEeCCceEEEEEEcCCCc-EeeEEEEec
Confidence 78999999999999999855421 234444433
No 206
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=23.02 E-value=3.6e+02 Score=29.43 Aligned_cols=107 Identities=8% Similarity=0.116 Sum_probs=70.1
Q ss_pred CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEEEc--
Q 014345 31 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-- 108 (426)
Q Consensus 31 dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-- 108 (426)
.+.|+++-...+.|..++.-... .-++++.|... + -..+++..+|.=+.+-.....|..+|
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH~k-------~---------Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGHRK-------P---------VRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCc-ceehhhhcchh-------h---------hhhhhccccCCeeeeeecceeeeeeccc
Confidence 67787777777777776543211 23455554321 1 24678888888888888888888888
Q ss_pred CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 109 DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 109 ~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
.|.+..-.-. + ..|..+-+-.++.+++++-..+.+|+.+|......
T Consensus 289 TG~~~~~f~~--~---------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 289 TGQVLSRFHL--D---------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred cceEEEEEec--C---------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 4444332210 0 13667775555569999999999999999886554
No 207
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.70 E-value=1.7e+02 Score=31.00 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=40.4
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI 161 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI 161 (426)
.+|.+.+.|.=||+-+....||+|. ..+ -.-+.-. -.+..-.++.+ ..+....|+.++...|
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------------kRMq~V~~Vk~-S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------------KRMQHVFCVKY-SMDSKYIISGSDDGNV 339 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------------hhhheeeEEEE-eccccEEEecCCCcce
Confidence 4577778899999998888899888 322 2222211 13455667774 4555666666555555
Q ss_pred EEEE
Q 014345 162 REIQ 165 (426)
Q Consensus 162 r~I~ 165 (426)
|.+.
T Consensus 340 RlWk 343 (433)
T KOG0268|consen 340 RLWK 343 (433)
T ss_pred eeee
Confidence 5444
No 208
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=22.47 E-value=3.4e+02 Score=30.00 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=44.0
Q ss_pred ceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc-ceEEEcCCCCEEEEECC
Q 014345 23 PYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP-KGLTVDDRGNIYIADTM 100 (426)
Q Consensus 23 P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P-~GIaVd~dG~LYVADt~ 100 (426)
-.||++.|.++ |+|+=....+|..+|..... ..-.+++ .+| ..|++.++|.+.+|-..
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y-------------------~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTY-------------------SHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeeccccc-ccceeee-------------------cCCcceeeecCCceEEEeecC
Confidence 35899999766 56665566788888775211 1111221 123 35888888888888888
Q ss_pred CCEEEEEc
Q 014345 101 NMAIRKIS 108 (426)
Q Consensus 101 N~rIrk~d 108 (426)
+++|..+|
T Consensus 271 ~G~~i~YD 278 (673)
T KOG4378|consen 271 KGELIAYD 278 (673)
T ss_pred CceEEEEe
Confidence 88888887
No 209
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=22.41 E-value=5.9e+02 Score=23.14 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=57.6
Q ss_pred eEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCE
Q 014345 24 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA 103 (426)
Q Consensus 24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~r 103 (426)
...+++ ++.+|++. .++.|+.++... |++..-.... ... +......+....+-.+-.+|.||++.....
T Consensus 116 ~~~~~~-~~~~~~~~-~~g~l~~~d~~t---G~~~w~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 116 SSPAVD-GDRLYVGT-SSGKLVALDPKT---GKLLWKYPVG-EPR----GSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp SEEEEE-TTEEEEEE-TCSEEEEEETTT---TEEEEEEESS-TT-----SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred cCceEe-cCEEEEEe-ccCcEEEEecCC---CcEEEEeecC-CCC----CCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 344444 33455555 477888888763 3332222111 000 000000122233333434568888887544
Q ss_pred EEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345 104 IRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171 (426)
Q Consensus 104 Irk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~ 171 (426)
+..++ ..+- .+.-. . +..+..+. ...++.||+.+ ..+.|..+++.....
T Consensus 185 ~~~~d~~tg~-~~w~~-~---------------~~~~~~~~-~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 185 VVAVDLATGE-KLWSK-P---------------ISGIYSLP-SVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTE-EEEEE-C---------------SS-ECECE-ECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred EEEEECCCCC-EEEEe-c---------------CCCccCCc-eeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 44446 2222 11210 0 11122322 45678899988 678999999876554
No 210
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=22.32 E-value=8e+02 Score=24.59 Aligned_cols=60 Identities=13% Similarity=0.312 Sum_probs=33.7
Q ss_pred EEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEE
Q 014345 27 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK 106 (426)
Q Consensus 27 aVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk 106 (426)
+++ ++.||+.+. ++.|+.++... |++.+-.-.... + -.+++++ ++.+||.+. ++.+..
T Consensus 62 ~v~-~~~v~v~~~-~g~v~a~d~~t---G~~~W~~~~~~~-------------~--~~~p~v~-~~~v~v~~~-~g~l~a 119 (377)
T TIGR03300 62 AVA-GGKVYAADA-DGTVVALDAET---GKRLWRVDLDER-------------L--SGGVGAD-GGLVFVGTE-KGEVIA 119 (377)
T ss_pred EEE-CCEEEEECC-CCeEEEEEccC---CcEeeeecCCCC-------------c--ccceEEc-CCEEEEEcC-CCEEEE
Confidence 444 567888774 57899999653 333332211100 0 0124454 567887764 577888
Q ss_pred Ec
Q 014345 107 IS 108 (426)
Q Consensus 107 ~d 108 (426)
+|
T Consensus 120 ld 121 (377)
T TIGR03300 120 LD 121 (377)
T ss_pred EE
Confidence 88
No 211
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=22.16 E-value=8.4e+02 Score=24.79 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=45.1
Q ss_pred ceEEEcCCCCEEEEECCCCEEEEEc-CCCc--E-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345 84 KGLTVDDRGNIYIADTMNMAIRKIS-DSGV--T-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR 159 (426)
Q Consensus 84 ~GIaVd~dG~LYVADt~N~rIrk~d-~g~V--s-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~ 159 (426)
.-..+.+++...++-+....+.+++ ++-+ . .+.|+ =.+-++-+ +..+|..+|+-...+
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-----------------~rWvWdc~-FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-----------------QRWVWDCA-FSADGEYLVTASSDH 280 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-----------------CceEEeee-eccCccEEEecCCCC
Confidence 3455667777777777777777777 3321 1 22221 12456666 467888888777778
Q ss_pred eEEEEEcCCCceEeec
Q 014345 160 AIREIQLHFDDCAYQY 175 (426)
Q Consensus 160 rIr~I~l~~~~~~~~~ 175 (426)
.++..++....-..++
T Consensus 281 ~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQY 296 (311)
T ss_pred ceeecccccCceeeec
Confidence 8888887755443333
No 212
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.01 E-value=7.8e+02 Score=24.35 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=29.7
Q ss_pred cCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEE
Q 014345 15 DGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLV 60 (426)
Q Consensus 15 ~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~v 60 (426)
.|...+..-.||.+-| +|.||-.. ..++|+.|++.. |....+
T Consensus 21 tGL~~ge~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~t---G~aT~v 63 (236)
T PF14339_consen 21 TGLAAGESLVGIDFRPANGQLYGLG-STGRLYTINPAT---GAATPV 63 (236)
T ss_pred ecccCCCeEEEEEeecCCCCEEEEe-CCCcEEEEECCC---CeEEEe
Confidence 3433444577899877 89999884 578999999985 444444
No 213
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=21.67 E-value=2.9e+02 Score=28.89 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=48.0
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR 162 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr 162 (426)
-++|++.+||.-+++=.+.+.||.++..-+....- .. ...+..+..|+-++|.++-..+.|+-...+.|+
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-r~---------~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-RC---------IRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-hH---------hhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 46899999999888888888888888221111000 00 011223447999996444446777777778888
Q ss_pred EEEcCC
Q 014345 163 EIQLHF 168 (426)
Q Consensus 163 ~I~l~~ 168 (426)
++.+..
T Consensus 159 vyk~~K 164 (420)
T KOG2096|consen 159 VYKLVK 164 (420)
T ss_pred EEEeee
Confidence 887654
No 214
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=21.39 E-value=6.7e+02 Score=26.62 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=42.9
Q ss_pred cCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345 80 MNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR 156 (426)
Q Consensus 80 Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs 156 (426)
+..-..|++.+|+..+++--....||+.. .+. +..+.-| +. .| -..|++. ++.++.+-.
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclG-------H~-------eF--VS~isl~--~~~~LlS~s 212 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLG-------HK-------EF--VSTISLT--DNYLLLSGS 212 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccc-------cH-------hh--eeeeeec--cCceeeecC
Confidence 55678999999987554433457788777 433 2222211 11 12 2344532 346677778
Q ss_pred CCCeEEEEEcCCCc
Q 014345 157 GNRAIREIQLHFDD 170 (426)
Q Consensus 157 gN~rIr~I~l~~~~ 170 (426)
|.+.|+.++.....
T Consensus 213 GD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 213 GDKTLRLWDITSGK 226 (390)
T ss_pred CCCcEEEEecccCC
Confidence 88888888876543
No 215
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=21.29 E-value=7.2e+02 Score=28.01 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=18.2
Q ss_pred cceEEEcCCCCEEEEECCCCEEEEEc
Q 014345 83 PKGLTVDDRGNIYIADTMNMAIRKIS 108 (426)
Q Consensus 83 P~GIaVd~dG~LYVADt~N~rIrk~d 108 (426)
-+++..|.+|+|||.+. ..|..+.
T Consensus 292 vnsL~~D~dGsLWv~t~--~giv~~~ 315 (671)
T COG3292 292 VNSLWLDTDGSLWVGTY--GGIVRYL 315 (671)
T ss_pred ccceeeccCCCEeeecc--CceEEEe
Confidence 46788999999999985 4455555
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=20.76 E-value=9.6e+02 Score=24.93 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=14.6
Q ss_pred eEEEcCCCC-E-EEEEC-CCCEEEEEc
Q 014345 85 GLTVDDRGN-I-YIADT-MNMAIRKIS 108 (426)
Q Consensus 85 GIaVd~dG~-L-YVADt-~N~rIrk~d 108 (426)
..++++||. | |++|. ++..|..++
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 356788886 3 34443 345677776
No 217
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.75 E-value=1.1e+03 Score=25.65 Aligned_cols=125 Identities=10% Similarity=0.122 Sum_probs=70.3
Q ss_pred CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCC--CCcccccCCcccc-cccCCcceEEEcCCCCEEEEE
Q 014345 22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSA--EGYSGHVDGKPRE-ARMNHPKGLTVDDRGNIYIAD 98 (426)
Q Consensus 22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~--~G~~G~~dG~a~~-A~Ln~P~GIaVd~dG~LYVAD 98 (426)
.+.++++.+++...++-..++.|.+++.-.+.. .+-+.-+. ....|. ...... ..-..-..+|+.+||..+++-
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~--~~~i~~~~ev~k~~~~-~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKK--DRYIIERDEVLKSHGN-PLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcc--cccccccchhhhhccC-CCCcccccccceeEEEEEcCCCcEEEec
Confidence 588999999888666666788999987754320 10111110 000000 011110 112233479999999988888
Q ss_pred CCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345 99 TMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 99 t~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
...+.|++++ +.. +.++.|-.. .-.+++|-.....||.+-. ...|..++++
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~-----------------~V~~L~fr~gt~~lys~s~-Drsvkvw~~~ 274 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRG-----------------AVSSLAFRKGTSELYSASA-DRSVKVWSID 274 (479)
T ss_pred CCCceEEEecCcccchhhccccccc-----------------ceeeeeeecCccceeeeec-CCceEEEehh
Confidence 7788888888 333 555554211 1234555555567777665 3455555554
No 218
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=20.61 E-value=1.7e+02 Score=29.67 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=35.8
Q ss_pred eEEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEE
Q 014345 85 GLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIRE 163 (426)
Q Consensus 85 GIaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~ 163 (426)
-|++-.+++||+.+...+.++.+. +|.-....|.... ...+..|....++...++...|.+.-.+...|..
T Consensus 56 ~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw--------vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~ 127 (353)
T PF00930_consen 56 YIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDW--------VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE 127 (353)
T ss_dssp EEEEEETTEEEEESSTTSEEEESES--TTTEEESB--H--------HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E
T ss_pred eeEEEecCceEEEECCCCCeEEeccccceeEEcCccce--------eccccccccccceEECCCCCEEEEEEECCcCCce
Confidence 477777889999987666777777 5533344442110 0112236667777744433355443333333333
No 219
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=20.54 E-value=3.9e+02 Score=25.80 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=15.6
Q ss_pred ECCCCeEEEEECCCCeEEEEEcC
Q 014345 145 IGSSCSLLVIDRGNRAIREIQLH 167 (426)
Q Consensus 145 vd~~G~LYVaDsgN~rIr~I~l~ 167 (426)
+...|+||+.+...+.+..+-..
T Consensus 136 vS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 136 VSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred EccCCeEEEEEccCCceeEeeec
Confidence 45667888877777776666543
No 220
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.07 E-value=5.4e+02 Score=26.67 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred ceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC-cceEEEcCCCCEEEEECC
Q 014345 23 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH-PKGLTVDDRGNIYIADTM 100 (426)
Q Consensus 23 P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~-P~GIaVd~dG~LYVADt~ 100 (426)
-..|+++| ..++++|.+..+.|+.++..-+ | ..++.. ...+.. +..+|...+|...++-..
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g---~~~~ka------------~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNS--G---QLVPKA------------QQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecC--C---cccchh------------hhccCCCeEEEEEccCCceEEeecc
Confidence 35788888 6778889888887777655410 0 111110 011223 348899889875555444
Q ss_pred CCEEEEEc--CCCcEEEe
Q 014345 101 NMAIRKIS--DSGVTTIA 116 (426)
Q Consensus 101 N~rIrk~d--~g~VstIa 116 (426)
...++.+| .+.+..++
T Consensus 93 Dk~~k~wDL~S~Q~~~v~ 110 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVA 110 (347)
T ss_pred CCceEEEEccCCCeeeee
Confidence 56677777 56565554
Done!