Query 014346
Match_columns 426
No_of_seqs 123 out of 210
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05208 ALG3: ALG3 protein; 100.0 5E-159 1E-163 1192.0 32.7 364 26-392 1-368 (368)
2 KOG2762 Mannosyltransferase [C 100.0 1E-156 3E-161 1162.3 33.4 392 13-414 14-411 (429)
3 PLN02841 GPI mannosyltransfera 97.6 0.011 2.4E-07 62.7 21.7 281 44-409 34-417 (440)
4 PF13231 PMT_2: Dolichyl-phosp 97.2 0.027 5.9E-07 48.5 15.5 122 82-203 3-132 (159)
5 TIGR03459 crt_membr carotene b 96.9 0.028 6E-07 60.2 15.9 157 46-203 94-269 (470)
6 PF09594 DUF2029: Protein of u 96.8 0.032 6.9E-07 51.6 13.5 151 80-242 2-162 (241)
7 KOG3893 Mannosyltransferase [C 96.8 0.006 1.3E-07 62.7 8.8 298 43-407 46-402 (405)
8 PF14897 EpsG: EpsG family 96.7 0.13 2.9E-06 49.5 17.1 137 50-200 23-162 (330)
9 COG5650 Predicted integral mem 96.4 0.0089 1.9E-07 64.5 7.5 134 153-288 219-355 (536)
10 PF05007 Mannosyl_trans: Manno 96.2 0.12 2.6E-06 51.5 14.0 208 153-406 8-258 (259)
11 PRK13375 pimE mannosyltransfer 96.2 0.82 1.8E-05 48.4 20.8 208 26-245 19-241 (409)
12 PF02366 PMT: Dolichyl-phospha 93.0 4.2 9E-05 38.7 14.8 120 81-200 62-197 (245)
13 TIGR03766 conserved hypothetic 92.3 18 0.00039 38.7 19.9 151 45-203 87-253 (483)
14 COG5542 Predicted integral mem 91.9 3.7 8.1E-05 43.7 13.9 135 118-256 138-288 (420)
15 PF03155 Alg6_Alg8: ALG6, ALG8 90.0 1.2 2.6E-05 47.9 8.4 100 154-254 160-269 (469)
16 PF09852 DUF2079: Predicted me 89.2 13 0.00028 39.2 15.2 151 47-204 7-166 (449)
17 KOG2575 Glucosyltransferase - 84.7 3.8 8.2E-05 44.0 8.1 231 3-246 4-296 (510)
18 TIGR03663 conserved hypothetic 81.7 78 0.0017 33.8 31.6 134 49-196 23-173 (439)
19 PF06728 PIG-U: GPI transamida 77.8 94 0.002 32.4 16.4 177 51-240 33-246 (382)
20 PF04188 Mannosyl_trans2: Mann 72.1 11 0.00023 40.1 7.0 104 132-237 147-258 (443)
21 KOG2576 Glucosyltransferase - 65.6 24 0.00052 38.1 7.8 129 120-254 118-270 (500)
22 COG1928 PMT1 Dolichyl-phosphat 56.2 54 0.0012 37.4 8.9 56 139-197 153-220 (699)
23 PF10131 PTPS_related: 6-pyruv 45.3 4.9E+02 0.011 29.2 16.2 117 81-201 4-135 (616)
24 cd09071 FAR_C C-terminal domai 38.9 11 0.00024 30.7 0.2 24 43-69 67-90 (92)
25 COG3463 Predicted membrane pro 37.5 4E+02 0.0086 29.2 11.4 163 35-201 22-191 (458)
26 PF11028 DUF2723: Protein of u 36.5 77 0.0017 30.1 5.5 34 172-205 138-171 (178)
27 cd08888 SRPBCC_PITPNA-B_like L 34.0 13 0.00029 37.4 -0.0 28 363-390 64-95 (258)
28 COG4346 Predicted membrane-bou 32.3 1.4E+02 0.0031 31.9 7.0 69 158-226 214-283 (438)
29 PF11057 Cortexin: Cortexin of 30.0 1E+02 0.0022 26.1 4.4 29 43-71 52-80 (81)
30 KOG3359 Dolichyl-phosphate-man 28.7 1.4E+02 0.003 34.5 6.6 86 139-229 163-271 (723)
31 KOG4214 Myotrophin and similar 28.4 34 0.00074 30.4 1.5 58 39-102 4-62 (117)
32 KOG2446 Glucose-6-phosphate is 27.3 41 0.0009 36.7 2.2 31 51-81 348-381 (546)
33 cd07815 SRPBCC_PITP Lipid-bind 26.7 19 0.00041 36.2 -0.4 28 363-390 64-95 (251)
34 TIGR03718 R_switched_Alx integ 26.6 1.9E+02 0.0042 29.8 6.8 72 329-406 221-297 (302)
35 cd08889 SRPBCC_PITPNM1-2_like 24.9 24 0.00051 35.7 -0.1 28 363-390 66-97 (260)
36 PF03929 PepSY_TM: PepSY-assoc 24.8 60 0.0013 22.0 1.9 20 140-164 2-21 (27)
37 COG4745 Predicted membrane-bou 22.5 5.5E+02 0.012 28.7 9.4 125 64-197 55-188 (556)
38 PRK13279 arnT 4-amino-4-deoxy- 22.4 1.1E+03 0.024 26.3 19.7 177 42-227 23-223 (552)
39 COG4146 Predicted symporter [G 22.4 1.4E+02 0.0031 32.4 5.0 124 55-183 217-360 (571)
40 cd08890 SRPBCC_PITPNC1_like Li 21.0 30 0.00066 34.8 -0.2 28 363-390 64-94 (250)
41 PF11344 DUF3146: Protein of u 20.6 66 0.0014 27.2 1.7 26 247-272 27-52 (80)
No 1
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=4.7e-159 Score=1191.97 Aligned_cols=364 Identities=53% Similarity=0.957 Sum_probs=336.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHHHHHHHh--ccchHHH
Q 014346 26 FAFGLIIMDALLVALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYIT--GGEVYSA 103 (426)
Q Consensus 26 ~~~llll~e~~l~~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lT--G~~I~~a 103 (426)
++|+++++|+++|++||+|||||||||+|||||||+|+||||||+|||||||||||||||||||++|||+| |+||+.|
T Consensus 1 v~~~lll~e~~l~~~II~~VpYTEIDw~aYMqqv~~~~~Ge~DYs~i~GdTGPlVYPAGfVyiY~~Ly~lT~~G~~I~~a 80 (368)
T PF05208_consen 1 VAPLLLLAESVLCKLIIWKVPYTEIDWKAYMQQVEGFLNGERDYSKIKGDTGPLVYPAGFVYIYSFLYYLTDGGENIRLA 80 (368)
T ss_pred CcchHHHHHHHHHHHheeeccCccccHHHHHHHHHHHHcCcccHHHhcCCCCCccccchHHHHHHHHHHHhcCCCcHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 014346 104 QIFFAFLYLINLGIVLFVYVKTDVLPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAV 183 (426)
Q Consensus 104 Q~IF~~lYl~tl~lv~~iY~~~~~vPp~~l~ll~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlav 183 (426)
|+||+++|++|+++|++||.+++++|||+++++|+|||+||||||||||||+||+++|+||++++++||.+||++||+||
T Consensus 81 Q~iF~~lyl~t~~~v~~~Y~~~~~~Pp~~~~ll~lSkRlHSI~vLRlFND~~a~~~~~~ai~~~~~~~w~~g~~~yS~av 160 (368)
T PF05208_consen 81 QYIFAGLYLATLALVFRIYSRSRKLPPWLLILLCLSKRLHSIFVLRLFNDCFAMLFLYAAILLFQRRRWLLGSLLYSLAV 160 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHhhccccccChhhHhhhcccccceeeEeeeeeeeecCccCCC
Q 014346 184 SIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHPVAYVSRAFNLGRVFIHFWSVNFKFVPEPVFV 263 (426)
Q Consensus 184 SIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~FlykWTVNWrFv~Ee~F~ 263 (426)
|||||+|||+||+++++++++|+.+++.++.+|+++|+++|+|||++||++|++|||||||||+|||||||||||||+|+
T Consensus 161 SIKMN~LL~~Pall~~~l~~~g~~~~~~~l~v~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~Fl~kWTVNwrFv~Ee~F~ 240 (368)
T PF05208_consen 161 SIKMNALLFAPALLVLLLQSLGLLKTLWYLAVCALVQVLLGLPFLLTNPWSYLSRAFDFSRQFLYKWTVNWRFVPEEIFL 240 (368)
T ss_pred HHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhHHHHhCHHHHHHHhcccCceEEEEEEEeeEEcCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhccccc-chHHHhHhHHHHhhhhhcCCCCCCCcccccchhHHHH-HHHHHHHHHHHh
Q 014346 264 SKGFAISLLTTHLVVLAAFSHYRWCKHEG-GLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVT-TMFAGNFIGIVC 341 (426)
Q Consensus 264 s~~F~~~LL~~Hl~~L~~F~~~rw~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~l~tsNfIGi~f 341 (426)
||+||++||++|+++|++|+.+||.++.+ ...++.++. .++.++.... ++....+.+|+++++ +|+|||+|||+|
T Consensus 241 s~~F~~~LL~~H~~~L~~F~~~rw~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~lftsNfIGIlf 317 (368)
T PF05208_consen 241 SKRFHLALLALHLALLLLFAFTRWIRPSGRSLRGLIKSL--LKPFRPNSQL-NSVISSPLTPDYIVTTPLFTSNFIGILF 317 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHH--Hhcccccccc-cccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997543 333333322 0111111111 112334566766655 599999999999
Q ss_pred hcccchhhHHHHHhhhhHHhhcCCCChhHHHHHHHHHHhhcccCCCchhHH
Q 014346 342 ARSLHYQFYLWYFYSLPYLLWRTPFPTLLRLILFMGVELCWNVYPSNIYSS 392 (426)
Q Consensus 342 ARSLHYQFy~WY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNvyPST~~SS 392 (426)
||||||||||||+||+|+|||+||+|+++++++|++|||||||||||+.||
T Consensus 318 ARSLHYQFysWY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNvyPST~~SS 368 (368)
T PF05208_consen 318 ARSLHYQFYSWYFWTLPFLLWCTGLPPPLKIALWGAIEYCWNVYPSTPLSS 368 (368)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCcCCCcCCC
Confidence 999999999999999999999999999999999999999999999999998
No 2
>KOG2762 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-156 Score=1162.34 Aligned_cols=392 Identities=55% Similarity=0.949 Sum_probs=368.4
Q ss_pred ccccccccCCchH--HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHH
Q 014346 13 ASFLGIFKSSKVA--FAFGLIIMDALLVALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYS 90 (426)
Q Consensus 13 ~~~~~~~~~p~~~--~~~llll~e~~l~~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs 90 (426)
-++-.++.||+.. +++.++++|++++.+||.|||||||||+|||||||||++||+||++++||||||||||||||||+
T Consensus 14 ~~~r~l~~~~~~~~iv~~~L~LaE~~l~~~iI~kV~YTEIDw~AYM~qve~fl~G~~dY~ql~GdTGPLVYPAGhv~iy~ 93 (429)
T KOG2762|consen 14 DNVRVLFDDPRAGLIVAALLILAEAVLVFLIISKVPYTEIDWKAYMEQVEGFLNGELDYSQLVGDTGPLVYPAGHVYIYS 93 (429)
T ss_pred cchhheecCCcchhHHHHHHHHHHHHHHHheeeecCcceecHHHHHHHHHHHHhcccchhhhcCCCCCccccchHHHHHH
Confidence 3566679999986 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHh
Q 014346 91 AIQYIT--GGEVYSAQIFFAFLYLINLGIVLFVYVKTDVLPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLL 168 (426)
Q Consensus 91 ~Ly~lT--G~~I~~aQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~l~ll~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~ 168 (426)
++||+| |+||++||+||+++|++|+++|++||.|+.++|||+++++|+|||+||||||||||||+||+++|++++++.
T Consensus 94 ~ly~lTs~g~nv~~aQ~iF~~lYl~tLalv~~iy~kt~~vPp~vlvL~~lskRiHSIfVLRLFND~fa~lll~~~i~~~l 173 (429)
T KOG2762|consen 94 LLYYLTSGGTNVRRAQYIFAGLYLLTLALVLRIYHKTVRVPPWVLVLLCLSKRIHSIFVLRLFNDPFAMLLLYVAILLFL 173 (429)
T ss_pred HHHHHHcCCCeeehHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHH
Confidence 999999 899999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHhhccccccChhhHhhhcccccceeeE
Q 014346 169 DQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHPVAYVSRAFNLGRVFIH 248 (426)
Q Consensus 169 ~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~~AFdf~R~Fly 248 (426)
++||.+||++||+|||||||+|||+||+++.++++.|..+|+.++.+|+++|+++|+|||+++|.+|+++||||||+|+|
T Consensus 174 ~qkw~~gs~~fSlAvSVKMNvLLyaPall~~lL~~~~~~~tl~~L~v~~~vQilvg~PFLl~~p~~Yl~~aFDlGR~F~~ 253 (429)
T KOG2762|consen 174 KQKWLVGSIFFSLAVSVKMNVLLYAPALLLLLLQNLGPIGTLLHLAVCILVQILVGLPFLLYFPSSYLTQAFDLGRVFMY 253 (429)
T ss_pred HHHHHhHhhhheeehhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCchHhhChHHHHhhhcccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeecCccCCCCchHHHHHHHHHHHHHHHHHHhhhc--ccccchHHHhHhHHHHhhhhhcCCCCCCCcccccchhH
Q 014346 249 FWSVNFKFVPEPVFVSKGFAISLLTTHLVVLAAFSHYRWC--KHEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEH 326 (426)
Q Consensus 249 kWTVNWrFv~Ee~F~s~~F~~~LL~~Hl~~L~~F~~~rw~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (426)
||||||||+|||+|+||+||.+||++|+++|++|+.+||+ |+..+..+.+..+ ++++. ....+..++.
T Consensus 254 kWtVNwrflpe~~F~~k~Fh~aLL~~HL~lL~aFa~~~w~~~Rr~~~~~~sl~~~-----l~k~~-----~~~~~~~t~~ 323 (429)
T KOG2762|consen 254 KWTVNWRFLPEEVFEDKRFHLALLILHLTLLVAFACYRWNKLRRLEDLLSSLNSM-----LSKRP-----LPALPAATPQ 323 (429)
T ss_pred EeeeeeEeCcHHHhccchHHHHHHHHHHHHHHHHHHhcchhhhcchhHHHhhhhh-----hhcCC-----CCCCcCccch
Confidence 9999999999999999999999999999999999999998 5666666644333 22221 1112233446
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCCChhHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHH
Q 014346 327 IVTTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPTLLRLILFMGVELCWNVYPSNIYSSLLLLCLHLVILYGL 406 (426)
Q Consensus 327 i~~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNvyPST~~SS~~L~~~~~~lL~~l 406 (426)
+.++++|||||||+||||||||||+|||||+|||+|++++|..+++++|++||+||||||||+.||++|++||+++++++
T Consensus 324 ~~~~l~tsNlIGI~fsRSLHYQFysWYf~~lPyLl~~~~~p~~~r~~~~~liE~~WNvYPsT~~SS~lL~~~h~Iill~L 403 (429)
T KOG2762|consen 324 IVFTLFTSNLIGILFSRSLHYQFYSWYFHTLPYLLWQTPFPFLVRLILLGLIELCWNVYPSTSLSSALLHCLHLIILLGL 403 (429)
T ss_pred hhHHHHhhchhhhhhhhhhHHHHHHHHHHhchHHHhhCCccHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCC
Q 014346 407 WSAPTEYP 414 (426)
Q Consensus 407 ~~~~~~~~ 414 (426)
|..+...|
T Consensus 404 ~l~~~~~p 411 (429)
T KOG2762|consen 404 ALTPYRKP 411 (429)
T ss_pred HhCCCCCc
Confidence 99877766
No 3
>PLN02841 GPI mannosyltransferase
Probab=97.62 E-value=0.011 Score=62.73 Aligned_cols=281 Identities=19% Similarity=0.335 Sum_probs=166.8
Q ss_pred hccccccCHHHHHHHhhhhccccccccccCCCC---CCccccchhHHHHHHHHHHh-cc--chHHHHHHHHHHHHHHHHH
Q 014346 44 YVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDT---GPLVYPAGFLYVYSAIQYIT-GG--EVYSAQIFFAFLYLINLGI 117 (426)
Q Consensus 44 ~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdT---GPLVYPAGfVyiYs~Ly~lT-G~--~I~~aQ~IF~~lYl~tl~l 117 (426)
.|+||+|||+-+-|-+..+.+|+=-| +||| =||. .++. + .. ....+-.+|+..=+++-.+
T Consensus 34 eVsytdidY~vftDga~lv~~G~SPY---~r~TYrytPLL-----a~Ll------lPn~~~~~~fgk~LF~l~Dll~a~l 99 (440)
T PLN02841 34 EVRYTDVDYLVFSDAAALVASGKSPF---ARDTYRYSPLL-----ALLL------VPNSLLHRSWGKFLFSAADLLVGLF 99 (440)
T ss_pred cccccccchHHHHHHHHHHHcCCCCC---CCCCCCcChHH-----HHHH------cchhhhhhhHHHHHHHHHHHHHHHH
Confidence 59999999999999999999997555 3333 2331 1111 1 11 1234556666655555555
Q ss_pred HHHHHHhcC---CCCchHHHHHhhhhhhhhhhhhhhhc------------chhHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 014346 118 VLFVYVKTD---VLPWWGLSLLCLSKRVHSIFVLRLFN------------DCFAMTFLHAALALLLDQRWHLGLIIFSVA 182 (426)
Q Consensus 118 v~~iY~~~~---~vPp~~l~ll~lSkRlHSIfVLRLFN------------D~~a~~~l~~ai~l~~~~~w~~g~~~ySla 182 (426)
...+=++.+ ..|.++ -+ +=||| |++..++.-.+++..+++|+..+++.+.+|
T Consensus 100 l~~il~~~~~~~~~~~~~----------a~---~wL~NPlti~istrGSse~i~~~lvl~~L~~l~~g~~~~Aa~~lgla 166 (440)
T PLN02841 100 IHTILRLRGVPEKVCTWS----------VM---VWLFNPFTFTIGTRGNCEPIVCAVILWILICLMNGRLLQAAFWYGLV 166 (440)
T ss_pred HHHHHHHhCccccccHHH----------HH---HHHhCcHHHHHhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544432221 112211 11 22455 788888888899999999999999999999
Q ss_pred hhhchhhhhhhhhHHHHHHHh--------------------------------------c----------ChHHHHHHHH
Q 014346 183 VSIKMNVLLYAPPLFLLLLKA--------------------------------------L----------GIFGVISTLA 214 (426)
Q Consensus 183 vSIKMN~LLf~Pallv~l~~~--------------------------------------~----------g~~~~~~~l~ 214 (426)
+-.|+--..|+|.++..+-.+ . |+......+.
T Consensus 167 vhfkiYPiIy~~Pi~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~s~~tf~~ 246 (440)
T PLN02841 167 VHFRIYPIIYALPIILVLDKQYFGPGGRPALTKWNSKQNKTPSSNTEATSFLFNLWTFLTSLFSRERIMFGLISGGVFFA 246 (440)
T ss_pred HHhhhhHHHHHHHHHHHhccccccccccccchhhhccccccccccccccchhhhhhHHHHhccCHhhhhhHHHHHHHHHH
Confidence 999999999998888777211 0 0011112222
Q ss_pred HHHHHHHHhhccccc-------------cC--h---hhHhhhcccccceeeEeeeeeeeecCccCCCCchHHHHHHHHHH
Q 014346 215 SAALVQILFGFPFLI-------------SH--P---VAYVSRAFNLGRVFIHFWSVNFKFVPEPVFVSKGFAISLLTTHL 276 (426)
Q Consensus 215 i~~~vQvllg~PFL~-------------~~--p---~~Yl~~AFdf~R~FlykWTVNWrFv~Ee~F~s~~F~~~LL~~Hl 276 (426)
.-+.--.+-|.|||. || | .-|++.+-+.+ ..-...-.+=++
T Consensus 247 l~~~~y~~YG~~FL~eaylYHl~R~DhRHNFS~yfy~lYL~~~~~~~---------------------~~~~~~aFlPQl 305 (440)
T PLN02841 247 LTGVSFYLYGWEFLNEALLYHLTRTDPRHNFSIYFYHIYLHHEQGFS---------------------LVERLASFLPQF 305 (440)
T ss_pred HHHHHHHHHhHHHHHHHHHHhheecCCCccCcHHHHHHHHhCCCcch---------------------hHHHHHHHHHHH
Confidence 234446677889986 23 2 44566421111 000111122233
Q ss_pred HHHHHHHHhhhcccccchHHHhHhHHHHhhhhhcCCCCCCCcccccchhHHHHHHHHHHHHHHHhhcccchhhHHHHHhh
Q 014346 277 VVLAAFSHYRWCKHEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVTTMFAGNFIGIVCARSLHYQFYLWYFYS 356 (426)
Q Consensus 277 ~~L~~F~~~rw~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~tsNfIGi~fARSLHYQFy~WY~~t 356 (426)
.+.++... ++.+ + ....||.=-+.=|.|-+=--=|++.||.--
T Consensus 306 ~l~~~~~~-~~~~-d-----------------------------------l~~~~f~qT~~FVtfNKVcTsQYF~Wyl~l 348 (440)
T PLN02841 306 LVQLALIL-CFSQ-D-----------------------------------LPFCLFLQTVAFVAFNKVITAQYFVWFFCL 348 (440)
T ss_pred HHHHHHHH-HHHc-c-----------------------------------ccHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 32222111 1211 1 011233333333444444445999999999
Q ss_pred hhHHhhcCCCCh----hHHHHHHHHHHhhc------------ccCCCchhHHHHHHHHHHHHHHHHhhc
Q 014346 357 LPYLLWRTPFPT----LLRLILFMGVELCW------------NVYPSNIYSSLLLLCLHLVILYGLWSA 409 (426)
Q Consensus 357 lP~LLw~t~~p~----~~~~~~~~~~E~~W------------NvyPST~~SS~~L~~~~~~lL~~l~~~ 409 (426)
+|+.+-.+.++. ...+++|++-|-.| |+|=.--.+|.+.+++|..++..+...
T Consensus 349 LPl~l~~~~~~~~~~~~~~l~lW~~~Q~~WL~~aY~LEF~G~n~F~~lw~asl~Ff~~n~~il~~~i~~ 417 (440)
T PLN02841 349 LPLILPWSRMKLKWKGLLCILVWMGSQLHWLMWAYLLEFKGRNVFLQLWIASLLFLAANTFVLLMIIQH 417 (440)
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhHhccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998887765 56678888887776 555545579999999999888887754
No 4
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=97.18 E-value=0.027 Score=48.47 Aligned_cols=122 Identities=19% Similarity=0.283 Sum_probs=89.7
Q ss_pred cchhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHhhhhhhhhhhhhhhhcchhHHHHH
Q 014346 82 PAGFLYVYSAIQYITGGEVYSAQIFFAFLYLINLGIVLFVYVKTDV-LPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFL 160 (426)
Q Consensus 82 PAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lYl~tl~lv~~iY~~~~~-vPp~~l~ll~lSkRlHSIfVLRLFND~~a~~~l 160 (426)
|-++-++.+..+.++|++....|..-.....++......+-++..+ -......++...-=....+.-..-+|...+++.
T Consensus 3 pPl~~~~~~~~~~l~G~~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~ 82 (159)
T PF13231_consen 3 PPLYFLLLALFFKLFGDSVWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSASARPDMLLLFFF 82 (159)
T ss_pred ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH
Confidence 4456788899999999888888888888888888888888877532 133333333332223444455666799999999
Q ss_pred HHHHHHHhh-------hhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHh
Q 014346 161 HAALALLLD-------QRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKA 203 (426)
Q Consensus 161 ~~ai~l~~~-------~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~ 203 (426)
..+++.+.+ +.|-+.+++.++|.-.|.+.+.+.|++.+.++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~~l~~~ 132 (159)
T PF13231_consen 83 LLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLLYLLLS 132 (159)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988863 3466899999999999999999999877744433
No 5
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=96.95 E-value=0.028 Score=60.18 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=114.6
Q ss_pred cccccCHHHHHHHhhhhccccccccccCC-CCC-------------CccccchhHHHHHHHHHHhccchHHHHHHHHHHH
Q 014346 46 PYTKIDWDAYMSQVSGFLEGERDYSNLKG-DTG-------------PLVYPAGFLYVYSAIQYITGGEVYSAQIFFAFLY 111 (426)
Q Consensus 46 pYTEIDw~AYMqqv~~~l~Ge~DYs~i~G-dTG-------------PLVYPAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lY 111 (426)
|--.=|-=.|.-|=+...+|-=-|+.--. ..| |=.||=-|+++.++.-.+||+|+..+=..+..+-
T Consensus 94 PlfSrDvYsYlaqG~l~~~G~dPY~~gP~~~~~~~~~~v~~~W~~t~aPYGPl~l~i~~~v~~l~g~~i~~~v~~~Rl~~ 173 (470)
T TIGR03459 94 PMMSRDVYSYLMQGALLRDGFDPYTVGAAANPGPLLDEVSPDWRNTTTPYGPLHLLVGQAITTVTGDNVTAGTLAFKLLS 173 (470)
T ss_pred CcccHHHHHHHHHHHHHHcCCCccccCCccCCchHhhhcCchhccCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33344888888888887777544543211 112 3468888999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----hcCCCCchHHHHHhhhhhhhhh-hhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhc
Q 014346 112 LINLGIVLFVYV----KTDVLPWWGLSLLCLSKRVHSI-FVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIK 186 (426)
Q Consensus 112 l~tl~lv~~iY~----~~~~vPp~~l~ll~lSkRlHSI-fVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIK 186 (426)
+...++...+-. +.+ +||-....+..-+=+--+ .|==+=||...+.++-+++++..++||..|.++-++|++||
T Consensus 174 l~g~~l~~w~~~rLar~~g-~~~~~AlWL~~~NPLviihlvgg~HnealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK 252 (470)
T TIGR03459 174 LPGLAVMVWAVPKLATHLG-GNPTVALWLGVLNPLVVIHLIGGMHNEMLMVGLVSAGILLALKRRPVAGIALIAVAVALK 252 (470)
T ss_pred HHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHcCchhhhhhhcchhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 988877775444 445 466444433221111000 11223399999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHh
Q 014346 187 MNVLLYAPPLFLLLLKA 203 (426)
Q Consensus 187 MN~LLf~Pallv~l~~~ 203 (426)
-..++.+|-+..+....
T Consensus 253 ~~a~l~Lpf~~~~~~~~ 269 (470)
T TIGR03459 253 ATAGIALPFVVWIWVAH 269 (470)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988666554
No 6
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=96.82 E-value=0.032 Score=51.62 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=94.9
Q ss_pred cccchhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCc--hHHH--HHhhhhh-hhhhhhhhhhc
Q 014346 80 VYPAGFLYVYSAIQYITGGEVYSAQIFFAFLYLINLGIVLFVYVKT-DV-LPW--WGLS--LLCLSKR-VHSIFVLRLFN 152 (426)
Q Consensus 80 VYPAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lYl~tl~lv~~iY~~~-~~-vPp--~~l~--ll~lSkR-lHSIfVLRLFN 152 (426)
+||-.+.+++..+..+. ...++.++..+-++.+........|. +. .|+ .... ..+.+.- ..++..- =+
T Consensus 2 ~YpP~~~~l~~p~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g--q~ 76 (241)
T PF09594_consen 2 VYPPLFALLFAPLALLP---FPVAFLLWALLSLAALALAVRLLLRRLGRRKPPGRALLLALLLLAFPPVLSALGLG--QF 76 (241)
T ss_pred cCcHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHhc--cH
Confidence 69999999999998776 66678888777777666665544433 21 011 2221 2222322 3444433 45
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHhhccccccC-
Q 014346 153 DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISH- 231 (426)
Q Consensus 153 D~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~- 231 (426)
|.+.++++..+++...++|+..++++.++|.++|---.++.|.+++ +...+..... ...+.. ..++|++...
T Consensus 77 ~~l~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ll~----~r~~r~~~~~-~~~~~~--~~~~~~~~~~~ 149 (241)
T PF09594_consen 77 DLLVAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPALLI----RRRWRAALWA-AATAAV--LFALPFLLFGP 149 (241)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cchHHHHHHH-HHHHHH--HHHHHHHHcCc
Confidence 9999999999999999998889999999999999876666663333 3333333333 322222 2233665443
Q ss_pred --hhhHhhhcccc
Q 014346 232 --PVAYVSRAFNL 242 (426)
Q Consensus 232 --p~~Yl~~AFdf 242 (426)
...|.+.-++-
T Consensus 150 ~~~~~~~~~l~~~ 162 (241)
T PF09594_consen 150 DSWQDFLSVLFQN 162 (241)
T ss_pred hHHHHHHHHHHHH
Confidence 56666644444
No 7
>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.006 Score=62.70 Aligned_cols=298 Identities=18% Similarity=0.301 Sum_probs=170.3
Q ss_pred hhccccccCHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHH-HHHHH-h-c--cchHHHHHHHHHHHHHHHHH
Q 014346 43 TYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYS-AIQYI-T-G--GEVYSAQIFFAFLYLINLGI 117 (426)
Q Consensus 43 ~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs-~Ly~l-T-G--~~I~~aQ~IF~~lYl~tl~l 117 (426)
.+||||+||++-.-+-.+...+|.--|.. +-|=|+ +|=|+ | . -.-.-+-+.|+..=+++-.+
T Consensus 46 ~~v~~TDIDY~VftDaar~Vs~G~sPf~R-------------~TYRYtP~la~ll~pni~~~p~~GK~Lf~~~Dll~a~L 112 (405)
T KOG3893|consen 46 SAVPYTDIDYKVFTDAARQVSAGDSPFAR-------------ATYRYTPILAWLLTPNIYLFPAWGKLLFAIFDLLIATL 112 (405)
T ss_pred ccCCccccceeEeehhhHHhhcCCChhhh-------------hhhcccHHHHHHhccceecCchHHHHHHHHHHHHHHHH
Confidence 37999999999988888888888765533 222222 12222 2 1 11123566666665555555
Q ss_pred HHHHHHhcCCCCc---------hHHHHH--hhhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhc
Q 014346 118 VLFVYVKTDVLPW---------WGLSLL--CLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIK 186 (426)
Q Consensus 118 v~~iY~~~~~vPp---------~~l~ll--~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIK 186 (426)
.+++-.+.+ +|- |.+=.+ +.|-|= =-||+.-.+.-+.++++|+++|..+++++.++|=.|
T Consensus 113 ~~kLl~~~~-i~~~~a~~~~~fWLlNPl~aiIStRG--------Naesi~~~lvi~~lyllqK~~v~~A~l~~GlaIh~K 183 (405)
T KOG3893|consen 113 IYKLLHMRS-ISRKQALIYASFWLLNPLTAIISTRG--------NAESIVAFLVILTLYLLQKSEVFLAGLAHGLAIHLK 183 (405)
T ss_pred HHHHHhhhh-cchhhhhHhhhhhhcCchheeeecCC--------chHHHHHHHHHHHHHHHHHhHHHHHHHHhhheeeeE
Confidence 555544211 111 222111 235443 248888889999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHhc---Ch-----------------HHHHHHHHHHH-HHHHHhhccccccChhhHhh------hc
Q 014346 187 MNVLLYAPPLFLLLLKAL---GI-----------------FGVISTLASAA-LVQILFGFPFLISHPVAYVS------RA 239 (426)
Q Consensus 187 MN~LLf~Pallv~l~~~~---g~-----------------~~~~~~l~i~~-~vQvllg~PFL~~~p~~Yl~------~A 239 (426)
.==+.|.|++.+-+.... +. .+++.....|. ..=-.-|+|||-+. |+- .+
T Consensus 184 IYPliY~l~i~l~ls~~~~~s~~~~~l~sLL~~~k~l~~~~~tLtsf~~~~~~fY~iYG~eFLd~~---ylYH~~R~D~r 260 (405)
T KOG3893|consen 184 IYPLIYSLAIYLSLSTRKTQSTPLDKLCSLLSINKQLCLILGTLTSFAACTWTFYYIYGWEFLDEA---YLYHFVRRDHR 260 (405)
T ss_pred echHHhhhhhheEEecCCCCCcHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHH---HHhheeccccc
Confidence 999999999987655411 11 23333444442 12233466665421 110 11
Q ss_pred ccccceeeEeeeeeeeecCccC-CCCchHHHHHHHHHHHHHHHHHHhhhcccccchHHHhHhHHHHhhhhhcCCCCCCCc
Q 014346 240 FNLGRVFIHFWSVNFKFVPEPV-FVSKGFAISLLTTHLVVLAAFSHYRWCKHEGGLLNFLHSRYVAMKMKFAGLSSSNSS 318 (426)
Q Consensus 240 Fdf~R~FlykWTVNWrFv~Ee~-F~s~~F~~~LL~~Hl~~L~~F~~~rw~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (426)
=|||=+|+= ..++++- +-|+.-+..-.+=++.+++.+.+.-|.+. +.
T Consensus 261 HNFS~~f~l------lYl~sas~~~s~~l~~~AflPQllLi~~~~~~~~~~~---Lp----------------------- 308 (405)
T KOG3893|consen 261 HNFSLYFLL------LYLGSASAEGSAILGLLAFLPQLLLILYLSLSFGQQD---LP----------------------- 308 (405)
T ss_pred ccCCHHHHH------HHHHccCccHHHHHhHHHHHHHHHHHHHHHHHhcccC---CC-----------------------
Confidence 234443331 1233332 44444444444455655555555433211 00
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCCChhHH----------HHHHHHHHh-----hcc
Q 014346 319 SRILKKEHIVTTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPTLLR----------LILFMGVEL-----CWN 383 (426)
Q Consensus 319 ~~~~~~~~i~~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~~~~----------~~~~~~~E~-----~WN 383 (426)
.++|..-|+=|.+-.=---|++.||---+|+.+..+.++.--. =++|.+.-| .||
T Consensus 309 ----------fc~F~~TfafVTyNKVcTSQYFvWYLv~LPl~l~~~~l~wkr~l~ll~lW~~~Q~lWL~~aY~lEf~gkN 378 (405)
T KOG3893|consen 309 ----------FCLFAQTFAFVTYNKVCTSQYFVWYLVLLPLVLPNFMLSWKRALGLLFLWFITQALWLLPAYLLEFQGKN 378 (405)
T ss_pred ----------ceeeeeeeeEEEechhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0111111111111111124999999999999999998875332 233333333 499
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHh
Q 014346 384 VYPSNIYSSLLLLCLHLVILYGLW 407 (426)
Q Consensus 384 vyPST~~SS~~L~~~~~~lL~~l~ 407 (426)
||=.--.+|.+....|..+|-.+.
T Consensus 379 tF~~i~Lag~lFf~~N~~iL~qii 402 (405)
T KOG3893|consen 379 TFYPIFLAGLLFFATNVYILKQII 402 (405)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 997788999999999988876553
No 8
>PF14897 EpsG: EpsG family
Probab=96.67 E-value=0.13 Score=49.54 Aligned_cols=137 Identities=20% Similarity=0.317 Sum_probs=95.1
Q ss_pred cCHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014346 50 IDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYITGGEVYSAQIFFAFLYLINLGIVLFVYVKTDVLP 129 (426)
Q Consensus 50 IDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lYl~tl~lv~~iY~~~~~vP 129 (426)
-||.+|.+.-+...+++-++++ ++.-| |+..+-..++.+ |.| -|.+.....+++........+|..+-+
T Consensus 23 ~D~~~Y~~~y~~~~~~~~~~~~--~~~E~-----~~~~l~~~~~~~-~~~---~~~~~~i~~~i~~~~~~~~i~~~~~~~ 91 (330)
T PF14897_consen 23 TDYYNYYEIYDEISNNSFNFSE--YGFEP-----GFYLLNYLFSYF-GFN---YQFFFFIISFISLFLFFFFIKKYSKNY 91 (330)
T ss_pred ccHHHHHHHHHHHhcccccccc--ccCCH-----HHHHHHHHHHHH-CCC---HHHHHHHHHHHHHHHHHHhHHHcccch
Confidence 3999999999999887755333 33333 666665555554 444 677777777777777776666655322
Q ss_pred -chHHHHHh--hhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHH
Q 014346 130 -WWGLSLLC--LSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLL 200 (426)
Q Consensus 130 -p~~l~ll~--lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l 200 (426)
++...++- ..-=..+...+|- +.|+.++..|+..+.+|||..+..+.-+|..+--.++++.|...+.-
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~iRq---~~A~~~~~~a~~~~~~~k~~~~~~~~lla~~fH~Saii~l~~~~l~~ 162 (330)
T PF14897_consen 92 PIFLSLFLFFSFFFFFYSFNQIRQ---SLAISFFLLALSYLYKKKWIKFILLVLLAILFHYSAIIFLPLYFLSR 162 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 2334456667774 67888888888888899998888888889999999999999865555
No 9
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=96.38 E-value=0.0089 Score=64.46 Aligned_cols=134 Identities=25% Similarity=0.304 Sum_probs=113.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHhhccccccCh
Q 014346 153 DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHP 232 (426)
Q Consensus 153 D~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p 232 (426)
|-++++++-++..+ |+|=+++.+++.+|.|.|---+..+|.+++..++.-|...++......+..=+++-.||+..+|
T Consensus 219 DtI~~ffla~a~v~--r~rP~lAGvl~Gls~a~K~~P~Ivl~pll~~~~keyg~~~a~~f~~~aa~t~lLvN~PfiI~~P 296 (536)
T COG5650 219 DTIWAFFLAAALVC--RGRPKLAGVLIGLSSAFKQIPLIVLPPLLYLIYKEYGLRPAIKFIATAAITWLLVNLPFIILGP 296 (536)
T ss_pred hHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhcCchhhHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHcCceEEech
Confidence 77888888888777 8888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcccccceee---EeeeeeeeecCccCCCCchHHHHHHHHHHHHHHHHHHhhhc
Q 014346 233 VAYVSRAFNLGRVFI---HFWSVNFKFVPEPVFVSKGFAISLLTTHLVVLAAFSHYRWC 288 (426)
Q Consensus 233 ~~Yl~~AFdf~R~Fl---ykWTVNWrFv~Ee~F~s~~F~~~LL~~Hl~~L~~F~~~rw~ 288 (426)
+++.+..+-+.|+=. =.|++==.|.|-+-+.-..|....|.+-+.....++.+.|.
T Consensus 297 ~aw~~sil~~~~r~~~~~~~~~sI~s~aG~~~~~P~~F~~~~l~l~v~lf~lya~~~~a 355 (536)
T COG5650 297 RAWVESILLFARRGLIGVGIGISIPSFAGFYAVDPLLFIIPPLVLNVFLFVLYALYCNA 355 (536)
T ss_pred HHHHHHHHhHHhcCCcccccceecccccccccccceEEehhHHHHHHHHHHHHHHHHHH
Confidence 999999988776422 23555556777778888888888888777777777765443
No 10
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=96.22 E-value=0.12 Score=51.55 Aligned_cols=208 Identities=23% Similarity=0.429 Sum_probs=124.7
Q ss_pred chhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcC--h-------------HHHHHHHHHHH
Q 014346 153 DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALG--I-------------FGVISTLASAA 217 (426)
Q Consensus 153 D~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g--~-------------~~~~~~l~i~~ 217 (426)
|++..++.-+++++++++||..+++++.+||..|.==.-|+|++..-+..+.. . .-++..+...+
T Consensus 8 Esl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~f~~~s~~tf~ 87 (259)
T PF05007_consen 8 ESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYLSNRKNGSFRSRLKRLLNPNRLKFGLISAITFA 87 (259)
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHHhccccchHHHHHHHhcCHhHhhhHHHHHHHHH
Confidence 77888888999999999999999999999999999999999999887654221 1 11111111111
Q ss_pred HH----HHHhhccccccChhhHhhhcccccceeeEeeeeee------eecCccCC--CCchHHHHHHHHHHHHHHHHHHh
Q 014346 218 LV----QILFGFPFLISHPVAYVSRAFNLGRVFIHFWSVNF------KFVPEPVF--VSKGFAISLLTTHLVVLAAFSHY 285 (426)
Q Consensus 218 ~v----Qvllg~PFL~~~p~~Yl~~AFdf~R~FlykWTVNW------rFv~Ee~F--~s~~F~~~LL~~Hl~~L~~F~~~ 285 (426)
.. =.+-|.|||.| +|+ +-+.|+ .++ =|+ ..++++.= .|......-.+=++.+.+....
T Consensus 88 ~l~~~~Y~~YG~~FL~e---ayl---YHl~R~-DhR--HNFS~yfy~lYL~~~~~~~~s~~~~~~aflPQl~l~~~~~~- 157 (259)
T PF05007_consen 88 ALTLLMYYIYGWEFLYE---AYL---YHLTRK-DHR--HNFSPYFYLLYLSSSSPTYSSSILGLLAFLPQLILILVISL- 157 (259)
T ss_pred HHHHHHHHHHChHHHHH---HHh---hheEee-cCC--ccCcHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHH-
Confidence 11 12447777652 121 123332 111 011 11122111 2333444444555544443322
Q ss_pred hhcccccchHHHhHhHHHHhhhhhcCCCCCCCcccccchhHHHHHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCC
Q 014346 286 RWCKHEGGLLNFLHSRYVAMKMKFAGLSSSNSSSRILKKEHIVTTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTP 365 (426)
Q Consensus 286 rw~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~ 365 (426)
++ +++ ....+|..-+.=|.|-+=-=-|.+.||..-+|..+-.++
T Consensus 158 ~~-~~d-----------------------------------L~~~~f~qT~~FVtFNKVcTsQYF~Wyl~lLPl~l~~~~ 201 (259)
T PF05007_consen 158 KF-YRD-----------------------------------LPFCLFLQTFAFVTFNKVCTSQYFLWYLCLLPLVLPRSR 201 (259)
T ss_pred HH-HCc-----------------------------------cchHHHHHHHHHHHhchhhcchHHHHHHHHHHHHhchhc
Confidence 22 110 122344444444455555556999999999999999988
Q ss_pred C-C---hhHHHHHHHHHHhhc------------ccCCCchhHHHHHHHHHHHHHHHH
Q 014346 366 F-P---TLLRLILFMGVELCW------------NVYPSNIYSSLLLLCLHLVILYGL 406 (426)
Q Consensus 366 ~-p---~~~~~~~~~~~E~~W------------NvyPST~~SS~~L~~~~~~lL~~l 406 (426)
+ + ....+++|++-|-.| |+|=.--.||.+..++|..++..+
T Consensus 202 l~s~~~~~~~l~~W~~~Q~~WL~~AY~LEF~G~n~F~~lw~asl~Ff~~N~~iL~~~ 258 (259)
T PF05007_consen 202 LLSWRKGVFLLALWVASQALWLLQAYLLEFLGKNTFLPLWLASLVFFIANVWILGQI 258 (259)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 4 234467777777665 566556679999999999887653
No 11
>PRK13375 pimE mannosyltransferase; Provisional
Probab=96.22 E-value=0.82 Score=48.44 Aligned_cols=208 Identities=14% Similarity=0.151 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc--cccccCHHHHHHHhhhhcccccccccc----CCCC-CCccccchhHHHHHHHHHHhcc
Q 014346 26 FAFGLIIMDALLVALIITYV--PYTKIDWDAYMSQVSGFLEGERDYSNL----KGDT-GPLVYPAGFLYVYSAIQYITGG 98 (426)
Q Consensus 26 ~~~llll~e~~l~~~II~~V--pYTEIDw~AYMqqv~~~l~Ge~DYs~i----~GdT-GPLVYPAGfVyiYs~Ly~lTG~ 98 (426)
.+|.++....+.-.+-+-.. +..-||-+-|.+-.+.+++|+-=|+.- .+|+ -|=.||=.+--++.=|-++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~vDl~VYr~g~~~~~~g~~LYd~~~~~~~~~~~LpFtYPPfaallf~PLalLp-- 96 (409)
T PRK13375 19 AAPLLLVLSVAARLAWTYLAPNGANFVDLHVYVGGAAALDHPGTLYDYVYADQTPDFPLPFTYPPFAALVFYPLHLLP-- 96 (409)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCccHHHHHHhHHHHccCCcccCccccccCCCCCCCCCCCcHHHHHHHHHHhcc--
Confidence 56766665555554433222 234489999999999999987655543 2233 39999999999998888875
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhc-C--CCCchH-HHH--Hhh-hhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhh
Q 014346 99 EVYSAQIFFAFLYLINLGIVLFVYVKT-D--VLPWWG-LSL--LCL-SKRVHSIFVLRLFNDCFAMTFLHAALALLLDQR 171 (426)
Q Consensus 99 ~I~~aQ~IF~~lYl~tl~lv~~iY~~~-~--~vPp~~-l~l--l~l-SkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~ 171 (426)
-..++.+|...=++.+..+.++..+. + .-|+.. ... +++ +.=+|+=+. .--+..++|-+.+.-+.++|
T Consensus 97 -~~~a~~l~~~~~~~al~~~v~~~~r~l~~~~~~~~~a~~~~~~~l~~ePv~~tl~----~GQIN~lL~~Lv~~dll~~r 171 (409)
T PRK13375 97 -FGVVAFLWQLATIAALYGVVRISQRLLGGGAGGHRVAMLWTAVGIWLEPVRSTFD----YGQINVFLMLAVLYAVYSSR 171 (409)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHhHHHHHHHH----hCcHHHHHHHHHHHHHhcCC
Confidence 34577777765555554444433321 1 011211 111 111 222222111 11223444444444455777
Q ss_pred hhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHhhccccccChhhHhhhc-ccccce
Q 014346 172 WHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAALVQILFGFPFLISHPVAYVSRA-FNLGRV 245 (426)
Q Consensus 172 w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~~A-Fdf~R~ 245 (426)
|..+.++..+|.+||-. |+++.+++.-.+-.+++.........=+.+|+...-.++++|.++. +|.+|.
T Consensus 172 ~~~aGvliGLAaaIKlT-----Pavf~l~lL~~RrWra~~~A~~t~~~~~~lg~~~~p~~s~~ywt~~l~~~~ri 241 (409)
T PRK13375 172 WWLSGLLVGLAAGVKLT-----PAITGLYFLGARRWAAAAFSAVVFLATVGVSYLVVGDQARYYFTDLLGDADRV 241 (409)
T ss_pred ccHHHHHHHHHHHhhhh-----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcccccc
Confidence 77889999999999976 7777777777777788887777888888888888888899999986 577775
No 12
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=93.03 E-value=4.2 Score=38.74 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=75.3
Q ss_pred ccchhHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH--HHHHhhhhhhhhhhhhhhhcchhHH
Q 014346 81 YPAGFLYVYSAIQYITG-GEVYSAQIFFAFLYLINLGIVLFVYVKTDVLPWWG--LSLLCLSKRVHSIFVLRLFNDCFAM 157 (426)
Q Consensus 81 YPAGfVyiYs~Ly~lTG-~~I~~aQ~IF~~lYl~tl~lv~~iY~~~~~vPp~~--l~ll~lSkRlHSIfVLRLFND~~a~ 157 (426)
||.-+.+.-..-++..| .|...+...=+..-.++..++..+=++...=+... ..++.++.-.+-..-...-+|...+
T Consensus 62 ~p~~~~~~~~~~~~~~~~~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr~~~~D~~l~ 141 (245)
T PF02366_consen 62 YPPLYYWISAIGFYYFGSVNYWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSRYALLDSILL 141 (245)
T ss_pred ccchhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHHhhHHHHH
Confidence 55555555444444445 66666666666666666666666655554212322 2233344445555555567999999
Q ss_pred HHHHHHHHHHhhhh-----------h-hHHHHHHHhhhhhchhhhhhh-hhHHHHH
Q 014346 158 TFLHAALALLLDQR-----------W-HLGLIIFSVAVSIKMNVLLYA-PPLFLLL 200 (426)
Q Consensus 158 ~~l~~ai~l~~~~~-----------w-~~g~~~ySlavSIKMN~LLf~-Pallv~l 200 (426)
+++-++++++.+.+ | .++.+.-++|+++|-+..+.. |+.++..
T Consensus 142 ~f~~la~~~~~~~~~~~~~~~~~~~~~~l~gi~lGla~~~K~~~~~~~~~~~~~~~ 197 (245)
T PF02366_consen 142 FFILLAIYCLLRWYRYQPFRRKWWLWLLLAGIALGLAILTKGPGLLLVLPAGLLFL 197 (245)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999886531 2 257788899999999987654 5554443
No 13
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=92.34 E-value=18 Score=38.73 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=95.8
Q ss_pred ccccccCHHHHHHHhhhhccccccccccCCCCCCcccc--chhHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHH
Q 014346 45 VPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYP--AGFLYVYSAIQYITGG-EVYSAQIFFAFLYLINLGIVLFV 121 (426)
Q Consensus 45 VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYP--AGfVyiYs~Ly~lTG~-~I~~aQ~IF~~lYl~tl~lv~~i 121 (426)
-+.-+=|..+.-++... +++-|+ .|.- -.|| =|++.+.+.++.+.|+ +...+|.+=..+=.++..++..+
T Consensus 87 ~~~p~~D~~~v~~~A~~--~~~~~~---~~Y~--~~yPnn~g~~l~~~~l~kifg~~~~~~~~llNil~~~~si~liy~i 159 (483)
T TIGR03766 87 HPLIGWDAGAVHTAATK--SNESSI---SNYF--SRNPNNLFLLLFMHFLYKLFGETSWLFFDVVNIVLVDLSALILYKA 159 (483)
T ss_pred CCCcCcCHHHHHHHHhc--CCCccc---Ccee--eECCchHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688777777763 223333 2221 2455 4788888888888886 77777766555554555555555
Q ss_pred HHhc--CCCCchHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHh--hh----hh-----hHHHHHHHhhhhhchh
Q 014346 122 YVKT--DVLPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLL--DQ----RW-----HLGLIIFSVAVSIKMN 188 (426)
Q Consensus 122 Y~~~--~~vPp~~l~ll~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~--~~----~w-----~~g~~~ySlavSIKMN 188 (426)
-++. ++.-.++..+..+. =-...|..=.-.|.++++++-++++++. .+ ++ -+..++.++|.-+|-|
T Consensus 160 ~k~lf~~~~a~~a~~l~~l~-~~~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~~~~~~~~~Il~gillal~~~iKp~ 238 (483)
T TIGR03766 160 VKKVFNKKKAFVALYLFVLL-LALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTDLRKKIALSILLGVLLAIAYFIKPS 238 (483)
T ss_pred HHHHhCchhHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5432 11223333332222 1255666678899999999888876543 11 21 2677888999999999
Q ss_pred hhhhhhhHHHHHHHh
Q 014346 189 VLLYAPPLFLLLLKA 203 (426)
Q Consensus 189 ~LLf~Pallv~l~~~ 203 (426)
.+.++||+++..+..
T Consensus 239 ~iI~liA~~i~~~l~ 253 (483)
T TIGR03766 239 AIIFVIAIFIVLFLQ 253 (483)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999998877663
No 14
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=91.93 E-value=3.7 Score=43.73 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=93.2
Q ss_pred HHHHHHhcCCCCchHHHHHhhhhhhhhhhhhhhh--cchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhh
Q 014346 118 VLFVYVKTDVLPWWGLSLLCLSKRVHSIFVLRLF--NDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPP 195 (426)
Q Consensus 118 v~~iY~~~~~vPp~~l~ll~lSkRlHSIfVLRLF--ND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pa 195 (426)
+...|-..+ .+-|+.++-++| =-.||.=-+- -|.+=|++..++++++-.++--.+.+.+|+|.+.|-|..++.|.
T Consensus 138 tk~~y~~~~-~a~fa~i~~~~~--P~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~~faLa~l~Rsngi~~~p~ 214 (420)
T COG5542 138 TKLRYGLGS-MARFATILVILS--PSVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALFFFALATLFRSNGIFLSPL 214 (420)
T ss_pred HHHHcccch-hhhheEEEEEec--cHHHhhhhHHhccchHHHHHHHHHHHHHHccchhHHHHHHHHHHHhccchhHHHHH
Confidence 344454434 377777777777 5567777777 89999999999999999988889999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHhhc-cc------cccChhhHhhhcccc-----cceeeEeeeee--eee
Q 014346 196 LFLLLLKALGIFGVISTLASAALVQILFGF-PF------LISHPVAYVSRAFNL-----GRVFIHFWSVN--FKF 256 (426)
Q Consensus 196 llv~l~~~~g~~~~~~~l~i~~~vQvllg~-PF------L~~~p~~Yl~~AFdf-----~R~FlykWTVN--WrF 256 (426)
+++-+.+... .+.+......+.+|+..++ |. -.+--..|...+=+| .+-++|+|-=| |++
T Consensus 215 fl~~~ik~~~-ik~i~~~l~~~~l~~~~ll~~~~~~~~~~~~~~~~y~~~~~~f~~~~~~~~~iy~~I~~~~w~v 288 (420)
T COG5542 215 FLIPLIKNRK-IKIIWYLLPSGSLTYLSLLMPAWILGRNAFEIFLGYWRQSNGFKEQGKNAPNIYSWIPNNYWNV 288 (420)
T ss_pred HHHHHHhhhh-HHHhhhhhhhHHHHHHHHHHHHHHhCccchhhhhhhhcccccchHHHhcchHHHHhhccceeee
Confidence 9999998776 4444444444444444332 22 111123444444333 34556766555 554
No 15
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=90.01 E-value=1.2 Score=47.93 Aligned_cols=100 Identities=33% Similarity=0.505 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhc--------ChHHHHHHHHHHHHHHHHhhc
Q 014346 154 CFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKAL--------GIFGVISTLASAALVQILFGF 225 (426)
Q Consensus 154 ~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~--------g~~~~~~~l~i~~~vQvllg~ 225 (426)
|+..-++-.|+..+.++|-.+|+++|++++.-|==.|-++|++.+-++.+. ++.+.+....+...+-.+.=.
T Consensus 160 ~~~lGl~l~si~~~~~~~~l~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~c~~~~~~~~~~~~~~~lg~~Vi~~f~~~~~ 239 (469)
T PF03155_consen 160 GFLLGLLLLSIAALIRGRYLLGAILFSLLLNFKQMFLYYAPAFFVYLLGSCFQRKSFRFSIKRLIKLGIVVIATFALSFG 239 (469)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 677788889999999999999999999999999999999999999888742 245555555666666666668
Q ss_pred ccccc-ChhhHhhhcccccceeeE-eeeeee
Q 014346 226 PFLIS-HPVAYVSRAFNLGRVFIH-FWSVNF 254 (426)
Q Consensus 226 PFL~~-~p~~Yl~~AFdf~R~Fly-kWTVNW 254 (426)
||+.. .-.+=++|=|-|+|-..+ ||- |+
T Consensus 240 PF~~~~~l~Qvl~RlFPF~RGL~hdy~A-Nf 269 (469)
T PF03155_consen 240 PFLYSGQLQQVLSRLFPFKRGLFHDYWA-NF 269 (469)
T ss_pred HHHHhhhHHHHHHHhCccccchHHHHHH-HH
Confidence 99854 456788999999998665 677 75
No 16
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=89.19 E-value=13 Score=39.16 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=101.7
Q ss_pred ccccCHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014346 47 YTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYIT--GGEVYSAQIFFAFLYLINLGIVLFVYVK 124 (426)
Q Consensus 47 YTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lT--G~~I~~aQ~IF~~lYl~tl~lv~~iY~~ 124 (426)
++-.|.--|+|.+..+..|+.=++.++|++-==+--.=-+++..-+|++- ..-+...|.+..++ ....+.++-++
T Consensus 7 ~~~~DlGif~Q~~~~~~~g~~~~~t~~~~~~lg~HfsPil~ll~Ply~l~Ps~~tLli~Qal~la~---~~~pl~~lar~ 83 (449)
T PF09852_consen 7 SPSFDLGIFDQAIWSYAHGRAPISTIEGQNHLGDHFSPILYLLAPLYRLFPSPLTLLIVQALLLAL---GAIPLYRLARR 83 (449)
T ss_pred CCchhHHHHHHHHHHHhCCCCceecccccccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 46679999999999999999888999887110011111146667788887 36677788765443 33344444444
Q ss_pred cCCCCchHHHHHh----hhhhhhhhhhhhhhc---chhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHH
Q 014346 125 TDVLPWWGLSLLC----LSKRVHSIFVLRLFN---DCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLF 197 (426)
Q Consensus 125 ~~~vPp~~l~ll~----lSkRlHSIfVLRLFN---D~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pall 197 (426)
.. .+++.-.... +|-=++++- +|+ ||+++-++..+.+.+.++||...+++--+.++||=..-++.-++.
T Consensus 84 ~~-~~~~~a~~~~~~ylL~p~~~~~~---~~dFH~~~~avPll~~~~~~~~~~r~~~~~~~~ll~llvKEd~~l~v~~~g 159 (449)
T PF09852_consen 84 RL-LSRRLALLIALAYLLSPGLQGAN---LFDFHPVAFAVPLLLWALYALERRRWRLFILWALLLLLVKEDLGLTVAGIG 159 (449)
T ss_pred Hc-CCcHHHHHHHHHHHHhHHHHhhh---hCCCcHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 43 2443333222 465566552 243 689988888888899999999999999999999977777777777
Q ss_pred HHHHHhc
Q 014346 198 LLLLKAL 204 (426)
Q Consensus 198 v~l~~~~ 204 (426)
+.+....
T Consensus 160 l~~~~~~ 166 (449)
T PF09852_consen 160 LYLLLRR 166 (449)
T ss_pred HHHHHhC
Confidence 6666544
No 17
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=84.71 E-value=3.8 Score=43.96 Aligned_cols=231 Identities=23% Similarity=0.331 Sum_probs=134.1
Q ss_pred cccccccCCcccccccccCCch-----HHHHHHHHHHHHHHHHHHhhcccccc-------CHHH--HHHHh------hh-
Q 014346 3 RRSATHVKHDASFLGIFKSSKV-----AFAFGLIIMDALLVALIITYVPYTKI-------DWDA--YMSQV------SG- 61 (426)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~-----~~~~llll~e~~l~~~II~~VpYTEI-------Dw~A--YMqqv------~~- 61 (426)
|..|.|...|+....+...-+- ...+. ++.-.+.....|.--||.-- |++| +-||| ++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~l~~r~~Isl~pYSG~~~PPmyGDyEAQRHWmEIT~nLPv~qW 82 (510)
T KOG2575|consen 4 RKPAIESNNPDPSKKFVSQFRSKMEKWLLSSP-ILLVLLCVRSAISLNPYSGAGSPPMYGDYEAQRHWMEITVNLPVSQW 82 (510)
T ss_pred cchhhhcCCCCcccccccccCCccchhhhHHH-HHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHhhcCcHHHH
Confidence 4456666666666665543221 12222 22233445556666677643 6666 22333 33
Q ss_pred hccccccccccCC-CCCCccccchhHHHHHHHHH---------Hh--c-cchHHHHHHHHHHHHHHHHHH-HHHHHhcCC
Q 014346 62 FLEGERDYSNLKG-DTGPLVYPAGFLYVYSAIQY---------IT--G-GEVYSAQIFFAFLYLINLGIV-LFVYVKTDV 127 (426)
Q Consensus 62 ~l~Ge~DYs~i~G-dTGPLVYPAGfVyiYs~Ly~---------lT--G-~~I~~aQ~IF~~lYl~tl~lv-~~iY~~~~~ 127 (426)
+.||+.|=-+--| |--||. |=|=|+....-+ .| | |.+. -..|.= .|.+.. ..+|
T Consensus 83 Y~n~t~NDLqYWGLDYPPLT--AYhSyl~G~i~~f~NP~wvaL~tSRGfES~~--hKlfMR---~TViisd~liy----- 150 (510)
T KOG2575|consen 83 YFNGTHNDLQYWGLDYPPLT--AYHSYLLGIIGNFINPEWVALHTSRGFESIA--HKLFMR---STVIISDLLIY----- 150 (510)
T ss_pred hhcCCCCccceecCCCCcHH--HHHHHHHHHHHhhcChhHhhhhccCCcccHH--HHHHHH---HHHHHHhHHHH-----
Confidence 4577655444444 323332 667777665432 12 5 4444 222211 111111 1333
Q ss_pred CCchHHHHHhhh----hhhhhhh-hhhhhcc-------------hhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhh
Q 014346 128 LPWWGLSLLCLS----KRVHSIF-VLRLFND-------------CFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNV 189 (426)
Q Consensus 128 vPp~~l~ll~lS----kRlHSIf-VLRLFND-------------~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~ 189 (426)
+||-++...+++ +.=...+ .+-|+|- |+..-+.-.||..+.+++..+||++|++|++-|==.
T Consensus 151 ~Pa~ify~~~~~r~~~~~~~~a~~~~iLl~P~L~LID~GHFQYNsisLGl~~~ai~~ll~~~~~~as~~F~LAlnyKQMe 230 (510)
T KOG2575|consen 151 LPALIFYFKWLHRTRSKKSKIAYAALILLYPSLLLIDHGHFQYNSISLGLTLYAIAALLKNFYVLASVLFVLALNYKQME 230 (510)
T ss_pred hhHHHHHHHHhhhccCcccHHHHHHHHHhCCceEEEecCcceechhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Confidence 466555555552 2112222 4555553 555666667888888899999999999999999888
Q ss_pred hhhhhhHHHHHHHhc-------ChHHHHHHHHHHHHHHHHhhcccccc--ChhhHhhhccccccee
Q 014346 190 LLYAPPLFLLLLKAL-------GIFGVISTLASAALVQILFGFPFLIS--HPVAYVSRAFNLGRVF 246 (426)
Q Consensus 190 LLf~Pallv~l~~~~-------g~~~~~~~l~i~~~vQvllg~PFL~~--~p~~Yl~~AFdf~R~F 246 (426)
|-++|.+..-++.+. ++.+.+.......+.=+++=+||+.+ +-..=+.|-|-|.|--
T Consensus 231 LY~A~pfF~fLLg~c~k~k~~~~f~ri~~ia~~Vv~TF~iiw~P~~~~~~~~~qvl~RlFPf~RGl 296 (510)
T KOG2575|consen 231 LYHALPFFAFLLGSCLKPKLFNSFARIIKIALAVVGTFVIIWLPFLLSGDTALQVLHRLFPFARGL 296 (510)
T ss_pred HHhchHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhCchhcch
Confidence 999999887776522 24455555555556667788899864 5778899999999974
No 18
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=81.65 E-value=78 Score=33.78 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=77.1
Q ss_pred ccCHH--HHHHHh-hhhccccccccccCCCCCCccccchhHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHH
Q 014346 49 KIDWD--AYMSQV-SGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYITGGE---VYSAQIFFAFLYLINLGIVLFVY 122 (426)
Q Consensus 49 EIDw~--AYMqqv-~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lTG~~---I~~aQ~IF~~lYl~tl~lv~~iY 122 (426)
-+||+ .|-+.. |+..+|+.+|.-. .+||+. -|+=...+.+-|.+ .|..+.+++.+= .++..+.
T Consensus 23 ~~~~DEa~ya~~a~~ml~~g~~~~~p~--~h~Pll-----~wl~A~~~~lFG~se~a~RL~~aL~g~~v----~l~~~~~ 91 (439)
T TIGR03663 23 VFHHDEAIHASFILKLLETGVYSYDPA--YHGPFL-----YHITAAVFHLFGISDATARLLPAVFGVLL----PLTAWLY 91 (439)
T ss_pred CCCCCchhHHHHHHHHHhcCCCCcCCC--CCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHHHHHH
Confidence 35554 444444 4556788777433 246764 24444555555753 566677777441 2222223
Q ss_pred Hhc-C-CCCchHHHHHhhhhh--hhhhhhhhhhcchhHHHHHHHHHHHHhh-------hhhhHHHHHHHhhhhhchhhhh
Q 014346 123 VKT-D-VLPWWGLSLLCLSKR--VHSIFVLRLFNDCFAMTFLHAALALLLD-------QRWHLGLIIFSVAVSIKMNVLL 191 (426)
Q Consensus 123 ~~~-~-~vPp~~l~ll~lSkR--lHSIfVLRLFND~~a~~~l~~ai~l~~~-------~~w~~g~~~ySlavSIKMN~LL 191 (426)
++. + +.--+...++++|-= .||.+ ..+|...++++-++++++.+ +.+.++.+..++|+..|-++++
T Consensus 92 r~~~~~~~al~AAllla~sp~~~~~sr~---~~~D~~l~~f~~lal~~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l 168 (439)
T TIGR03663 92 RKRLGDNEVLWAAVLLAFSPVMVYYSRF---MRNDIFVAFFTLLAVGAAFRYLDTGKRRYLFLAASALALAFTSKENAYL 168 (439)
T ss_pred HHHcCcHHHHHHHHHHHHhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1 111122333333321 24433 45999999999999988763 2234788999999999999988
Q ss_pred hhhhH
Q 014346 192 YAPPL 196 (426)
Q Consensus 192 f~Pal 196 (426)
+.+.+
T Consensus 169 ~~~~~ 173 (439)
T TIGR03663 169 IILIF 173 (439)
T ss_pred HHHHH
Confidence 77554
No 19
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=77.81 E-value=94 Score=32.44 Aligned_cols=177 Identities=19% Similarity=0.283 Sum_probs=105.5
Q ss_pred CHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHH---HH
Q 014346 51 DWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYITGGEVYS----AQIFFAFLYLINLGIVLFV---YV 123 (426)
Q Consensus 51 Dw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lTG~~I~~----aQ~IF~~lYl~tl~lv~~i---Y~ 123 (426)
+||.=.|-+....+| .+--.||+ .-+|-=.+++++.+.. .+-+... .+.+|...=+++-.....+ |.
T Consensus 33 Sfkrl~Eg~~L~~~g---~spY~g~v--~h~~PLlL~l~~~l~~-~~~~~~~~~~~~~llf~~~Dl~~A~~L~~i~~~~~ 106 (382)
T PF06728_consen 33 SFKRLQEGVYLYKHG---ISPYSGGV--FHQPPLLLALFSFLLK-SSPNSPNSPILISLLFILVDLLIAWLLYRIAKSYQ 106 (382)
T ss_pred hHHHHHHHHHHHHcC---CCCcCCCC--ccCcCHHHHHHHHHHh-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655555555666 45566776 6677777888777742 1112222 3444444433333333333 22
Q ss_pred hcC----------CCCchHHHHH-------hhhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhc
Q 014346 124 KTD----------VLPWWGLSLL-------CLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIK 186 (426)
Q Consensus 124 ~~~----------~vPp~~l~ll-------~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIK 186 (426)
+.. ..+|+.+... ++|-=-|| =|.+..+++-.+++...+++...+++..++|.-..
T Consensus 107 ~~~~~~~~~~~~~~~~~~lv~~~YLfNP~tIlscva~S-------T~~f~nl~i~~sl~~a~~g~~~~s~i~lAlatylS 179 (382)
T PF06728_consen 107 KQESKRQKSPNEKSSSPWLVAAFYLFNPLTILSCVALS-------TTVFTNLFILLSLYFAVKGNVFLSAISLALATYLS 179 (382)
T ss_pred hhhhhhhcCchhcccchHHHHHHHHHCHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 110 0244433221 11211122 26778888999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHH---------hcC---hHHHHH-HHHHHHHHHHHhhccccccChhhHhhhcc
Q 014346 187 MNVLLYAPPLFLLLLK---------ALG---IFGVIS-TLASAALVQILFGFPFLISHPVAYVSRAF 240 (426)
Q Consensus 187 MN~LLf~Pallv~l~~---------~~g---~~~~~~-~l~i~~~vQvllg~PFL~~~p~~Yl~~AF 240 (426)
++-.+.+|.++..+.. ..+ ..+.+. .+..++.+.+++.+.|+..+.|+++.+.+
T Consensus 180 lYpi~Ll~Plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~L~~~S~~~~~sw~fl~~ty 246 (382)
T PF06728_consen 180 LYPILLLPPLLLLLYSSWKQSKSKNSSKSSKWSSFLQILLIFIASLAALLLLSYLITGSWNFLDSTY 246 (382)
T ss_pred hhHHHHHHHHHHHHHhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999888888877766 111 233333 33344555666777888788788777654
No 20
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=72.14 E-value=11 Score=40.11 Aligned_cols=104 Identities=28% Similarity=0.345 Sum_probs=72.7
Q ss_pred HHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhc-------
Q 014346 132 GLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKAL------- 204 (426)
Q Consensus 132 ~l~ll~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~------- 204 (426)
...+.|+|= =|||.--.-..+.-.++.+.++++..+++|..+++++++|....-|-++.+..+....+...
T Consensus 147 a~ll~~~~P--asiF~sa~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~RsnGll~~~~~~~~~l~~~~~~l~~~ 224 (443)
T PF04188_consen 147 AALLFIFSP--ASIFLSAPYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTRSNGLLLAGFFAYELLGIYYLDLRQL 224 (443)
T ss_pred HHHHHHHcc--HHHHhhcCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445532 26788888889999999999999999999999999999999999999998877766655421
Q ss_pred C-hHHHHHHHHHHHHHHHHhhccccccChhhHhh
Q 014346 205 G-IFGVISTLASAALVQILFGFPFLISHPVAYVS 237 (426)
Q Consensus 205 g-~~~~~~~l~i~~~vQvllg~PFL~~~p~~Yl~ 237 (426)
+ ..+.+..+....+-=.+++.||+..+-.+|-.
T Consensus 225 ~~~~~~~~~~~~~~l~~~~i~~pf~~~q~~~y~~ 258 (443)
T PF04188_consen 225 RRQRRLVRALISAILSGLLIFLPFVLFQYYAYYR 258 (443)
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 1 12233333322222346788998866555543
No 21
>KOG2576 consensus Glucosyltransferase - Alg8p [Transcription]
Probab=65.55 E-value=24 Score=38.08 Aligned_cols=129 Identities=27% Similarity=0.347 Sum_probs=85.1
Q ss_pred HHHHhcCCCC-c-----hHHHHHhhhh------hhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhch
Q 014346 120 FVYVKTDVLP-W-----WGLSLLCLSK------RVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKM 187 (426)
Q Consensus 120 ~iY~~~~~vP-p-----~~l~ll~lSk------RlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKM 187 (426)
+.|+.++++| + -+.+++.+|- -+|==| .++-.-.+-.||...+++|..+++..||..+--|=
T Consensus 118 r~~~l~~kl~k~~~~~~~~a~ll~~s~gLlIvDhIHFQY------NgfLfgilLlSI~~l~~kr~l~~A~~fsvll~FKH 191 (500)
T KOG2576|consen 118 RSYRLTSKLGKDQKQRFACAVLLLLSPGLLIVDHIHFQY------NGFLFGILLLSIVFLKTKRYLLSAFLFSVLLNFKH 191 (500)
T ss_pred hhhcccccCCcccccchHHHHHHHhCCCcEEEEEeeeec------ccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 5787766666 1 3444444443 344333 24555667778888889999999999999999999
Q ss_pred hhhhhhhhHHHHHHH----hcC------hHHHHHHHHHHHHHHHHhhccccccC-hhhHhhhcccccceeeEe-eeeee
Q 014346 188 NVLLYAPPLFLLLLK----ALG------IFGVISTLASAALVQILFGFPFLISH-PVAYVSRAFNLGRVFIHF-WSVNF 254 (426)
Q Consensus 188 N~LLf~Pallv~l~~----~~g------~~~~~~~l~i~~~vQvllg~PFL~~~-p~~Yl~~AFdf~R~Flyk-WTVNW 254 (426)
=-|-++||..+-++. ..| ..+.+....+...+=.+-=.||+-.+ --+=++|-|-|||-..|- |-=|+
T Consensus 192 IflY~ApaY~vylLr~Yc~~~nn~~~~~~~~vikL~~vv~~~F~~s~gPf~~~~qlpqvlSRLFPfsRGLtHAYWAPNF 270 (500)
T KOG2576|consen 192 IFLYVAPAYFVYLLRNYCLTSNNVFLANFLNVIKLGIVVLIPFAASFGPFIYVQQLPQVLSRLFPFSRGLTHAYWAPNF 270 (500)
T ss_pred heeeechhHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHhCCcccccchhhccchH
Confidence 999999998876654 222 33334433333333333335665433 345688999999999884 66664
No 22
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.23 E-value=54 Score=37.41 Aligned_cols=56 Identities=30% Similarity=0.345 Sum_probs=39.2
Q ss_pred hhhhhhhhhhhhhcchhHHHHHHHHHHHHhh--------hhhh----HHHHHHHhhhhhchhhhhhhhhHH
Q 014346 139 SKRVHSIFVLRLFNDCFAMTFLHAALALLLD--------QRWH----LGLIIFSVAVSIKMNVLLYAPPLF 197 (426)
Q Consensus 139 SkRlHSIfVLRLFND~~a~~~l~~ai~l~~~--------~~w~----~g~~~ySlavSIKMN~LLf~Pall 197 (426)
|.+.=|=|. ..|...++++.++++++.+ ++|. +..+..++|+|+|++-++-.=.++
T Consensus 153 ~~~t~sR~I---LLDs~LlfF~~~~~y~~~r~~~~~p~s~~w~~~Ll~tGisLGcaiS~KwvGlft~~~vg 220 (699)
T COG1928 153 SFVTESRFI---LLDSFLLFFIVAAAYCFLRFHRQQPFSRRWLKWLLLTGISLGCAISVKWVGLFTTGVVG 220 (699)
T ss_pred chhhhhHHH---HHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHhcceeeeEEEeeehhHHHHHHHH
Confidence 444444443 3799999999999998863 3444 566888999999999655443333
No 23
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=45.25 E-value=4.9e+02 Score=29.23 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=62.8
Q ss_pred ccchhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchHHHH--Hh--hhhhhhhhhhhhhhcchh
Q 014346 81 YPAGFLYVYSAIQYITGGEVYSAQIFFAFLYLINLGIVLFVYVK-TDVLPWWGLSL--LC--LSKRVHSIFVLRLFNDCF 155 (426)
Q Consensus 81 YPAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lYl~tl~lv~~iY~~-~~~vPp~~l~l--l~--lSkRlHSIfVLRLFND~~ 155 (426)
||--.-|+.+++..++| |...|+.++..+.++-.++.+..+.| .+. +..+++. +. ..+|+-.+|.- -|-+-
T Consensus 4 YpPL~yyl~a~l~~l~g-~~~~Ay~l~~~L~~~l~~~~~Y~~~R~~~~-~~~A~l~aiLyl~~py~l~~~y~r--gni~e 79 (616)
T PF10131_consen 4 YPPLPYYLGALLSLLFG-NPIVAYKLFIFLAFFLGGLGMYFLGRRLGR-RKAAILAAILYLFSPYHLRNIYWR--GNIPE 79 (616)
T ss_pred CCcHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhHHHHHHHHhc--chHHH
Confidence 67777899999999995 77788888876666555555544444 333 4444443 33 24677777663 34444
Q ss_pred HHH--HHHH---HHHHHh-hh---hhhHHHHHHHh-hhhhchhhhhhhhhHHHHHH
Q 014346 156 AMT--FLHA---ALALLL-DQ---RWHLGLIIFSV-AVSIKMNVLLYAPPLFLLLL 201 (426)
Q Consensus 156 a~~--~l~~---ai~l~~-~~---~w~~g~~~ySl-avSIKMN~LLf~Pallv~l~ 201 (426)
++. ++=. +++.+. ++ .|...++.+|+ +.|==|..+++..++++.++
T Consensus 80 ~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~lsHll~~ll~~l~~~~~lL 135 (616)
T PF10131_consen 80 TLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALSHLLSTLLTGLALIVFLL 135 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 422 2111 222222 22 24444555553 33322555555555444444
No 24
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=38.89 E-value=11 Score=30.67 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=17.0
Q ss_pred hhccccccCHHHHHHHhhhhccccccc
Q 014346 43 TYVPYTKIDWDAYMSQVSGFLEGERDY 69 (426)
Q Consensus 43 ~~VpYTEIDw~AYMqqv~~~l~Ge~DY 69 (426)
-..-.++|||+.|++.+ ..|-+.|
T Consensus 67 F~fD~~~idW~~Y~~~~---~~G~r~y 90 (92)
T cd09071 67 FNFDIRSIDWDDYFENY---IPGLRKY 90 (92)
T ss_pred CCCCCCCCCHHHHHHHH---HHHHHHH
Confidence 34567899999999876 4454444
No 25
>COG3463 Predicted membrane protein [Function unknown]
Probab=37.52 E-value=4e+02 Score=29.25 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=101.3
Q ss_pred HHHHHHHHhhccccccCHHHHHHHhhhhccccccccccCCC-CCCccc--cchhHHHHHHHHHHh--ccchHHHHHHHHH
Q 014346 35 ALLVALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGD-TGPLVY--PAGFLYVYSAIQYIT--GGEVYSAQIFFAF 109 (426)
Q Consensus 35 ~~l~~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~Gd-TGPLVY--PAGfVyiYs~Ly~lT--G~~I~~aQ~IF~~ 109 (426)
+..+...-+--.+|--|=-=|+|-++.-.+|+.=|+..++. |++-|+ |+-|+ +|- +|++- =+-...-|-|+..
T Consensus 22 ~~~~v~ky~sf~~ta~DLGI~sq~l~~~~~Gk~~Y~t~~~~~~~f~vhfqpilfL-lyP-~Y~l~Psp~~Lll~Q~i~ia 99 (458)
T COG3463 22 SYYSVVKYWSFNSTALDLGIFSQSLYTTSHGKLFYNTVEFQLTHFGVHFQPILFL-LYP-FYKLFPSPETLLLIQAIAIA 99 (458)
T ss_pred HHHHHHHhhhhcceeechHHHHHHHHHHhCCeeeccchhhhcccceeehhhHHHH-HHH-HHHhCCcHHHHHHHHHHHHH
Confidence 33444455566889999999999999999999999999999 998665 33332 222 56665 3556666766654
Q ss_pred HHHH-HHHHHHHHHHhcCCCCchHHHHH-hhhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhhch
Q 014346 110 LYLI-NLGIVLFVYVKTDVLPWWGLSLL-CLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAVSIKM 187 (426)
Q Consensus 110 lYl~-tl~lv~~iY~~~~~vPp~~l~ll-~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlavSIKM 187 (426)
+=.. +..+...+-...+ -...+-.+ .++-=+|+|.----==-.+|..++..|++.+.+++|.++-+.--+-++.|=
T Consensus 100 ls~~p~y~lA~eil~~E~--~al~isilYll~p~i~gi~~FDFH~m~~avp~~~~a~~f~~r~k~~l~li~lvlIl~tk~ 177 (458)
T COG3463 100 LSSLPIYLLAKEILNGEK--EALAISILYLLNPYIEGINLFDFHPMAFAVPLFLLAYYFLKRKKWKLFLIFLVLILLTKE 177 (458)
T ss_pred HhHHHHHHHHHHHhcccH--HHHHHHHHHHhchhccCchhhhcchHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc
Confidence 3211 1111111111111 01111222 357777777543222235778888999999999999999988888888886
Q ss_pred hhhhhhhhHHHHHH
Q 014346 188 NVLLYAPPLFLLLL 201 (426)
Q Consensus 188 N~LLf~Pallv~l~ 201 (426)
-+.+..=.+++..-
T Consensus 178 ~a~liiIsl~i~~~ 191 (458)
T COG3463 178 DAFLIIISLLIWLR 191 (458)
T ss_pred ccHHHHHHHHHHHH
Confidence 55444444444433
No 26
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=36.48 E-value=77 Score=30.06 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=29.6
Q ss_pred hhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcC
Q 014346 172 WHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALG 205 (426)
Q Consensus 172 w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g 205 (426)
..+++.+..+|+++-+-.++..|++..+++.+..
T Consensus 138 l~l~afl~GLs~g~H~~~ll~lP~~~~~~~~~~~ 171 (178)
T PF11028_consen 138 LLLIAFLCGLSLGVHLLNLLALPAIALLYFFKRY 171 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3478999999999999999999999998887654
No 27
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=34.04 E-value=13 Score=37.40 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=22.3
Q ss_pred cCCCChhHHHHH----HHHHHhhcccCCCchh
Q 014346 363 RTPFPTLLRLIL----FMGVELCWNVYPSNIY 390 (426)
Q Consensus 363 ~t~~p~~~~~~~----~~~~E~~WNvyPST~~ 390 (426)
.+++|..++-++ +.++|-|||.||-+-+
T Consensus 64 ~sklP~wir~~~P~~al~v~EkaWNaYPy~~T 95 (258)
T cd08888 64 QSKVPGFVRMLAPEGSLEIHEKAWNAYPYCRT 95 (258)
T ss_pred cccchhHHHHhCCCcceEEehhhhcCCCceEE
Confidence 467787777665 7789999999998765
No 28
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.32 E-value=1.4e+02 Score=31.92 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhhhchhhhhhhhhHHHHHHHhcChHHHHHHHHHHH-HHHHHhhcc
Q 014346 158 TFLHAALALLLDQRWHLGLIIFSVAVSIKMNVLLYAPPLFLLLLKALGIFGVISTLASAA-LVQILFGFP 226 (426)
Q Consensus 158 ~~l~~ai~l~~~~~w~~g~~~ySlavSIKMN~LLf~Pallv~l~~~~g~~~~~~~l~i~~-~vQvllg~P 226 (426)
+|..++++++.++|-.++.+.-.+|-|+||+--.-+|-+-+.....+++.+-+....+++ .+=++.-.|
T Consensus 214 FFtaL~~~fl~~~R~l~sgiAlGLAAs~K~SG~~vfpil~~~~l~~~~~k~~~iagilip~~vfll~~~P 283 (438)
T COG4346 214 FFTALFMYFLANDRPLWSGIALGLAASVKLSGAFVFPILWYAILKENDLKERFIAGILIPALVFLLPEIP 283 (438)
T ss_pred HHHHHHHHHHhcCCeehHHHHHHHHHHHhhcccchHHHHHHHHHhhhhHHHHHHhhhhHhhHHHHhcccH
Confidence 444455566678888899999999999999998889999888888888777766554443 344444444
No 29
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=29.96 E-value=1e+02 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=24.9
Q ss_pred hhccccccCHHHHHHHhhhhccccccccc
Q 014346 43 TYVPYTKIDWDAYMSQVSGFLEGERDYSN 71 (426)
Q Consensus 43 ~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~ 71 (426)
.-=||..+-=++.-++.|++..|+.||+.
T Consensus 52 llDPYssmPtStW~d~~eglekGqFdyaL 80 (81)
T PF11057_consen 52 LLDPYSSMPTSTWTDHKEGLEKGQFDYAL 80 (81)
T ss_pred HcChhhcCCcchhhhhhhhhhcccccccc
Confidence 34599999888888999999999999974
No 30
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.72 E-value=1.4e+02 Score=34.45 Aligned_cols=86 Identities=29% Similarity=0.432 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhhhcchhHHHHHHHHHHHHhh----------hhhh----HHHHHHHhhhhhchhhhhhhhhHHHHHHH--
Q 014346 139 SKRVHSIFVLRLFNDCFAMTFLHAALALLLD----------QRWH----LGLIIFSVAVSIKMNVLLYAPPLFLLLLK-- 202 (426)
Q Consensus 139 SkRlHSIfVLRLFND~~a~~~l~~ai~l~~~----------~~w~----~g~~~ySlavSIKMN~LLf~Pallv~l~~-- 202 (426)
|.+--|=|+| =|...++++-++++++.+ .+|. +.++.-|+|+|+|+=-++-.=.+++....
T Consensus 163 s~~T~sr~IL---LDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~~~Vgl~~v~~L 239 (723)
T KOG3359|consen 163 SLVTLSRFIL---LDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTIALVGLYTVREL 239 (723)
T ss_pred cchhhhhHHH---HhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHHHHHHHHHHHHH
Confidence 4444444444 399999999999999874 1233 56788899999999777655544443322
Q ss_pred -------hcChHHHHHHHHHHHHHHHHhhccccc
Q 014346 203 -------ALGIFGVISTLASAALVQILFGFPFLI 229 (426)
Q Consensus 203 -------~~g~~~~~~~l~i~~~vQvllg~PFL~ 229 (426)
+......+.+++.++. .++++||+.
T Consensus 240 W~Ll~D~~~s~~~~~kh~~ar~~--~LI~iP~~i 271 (723)
T KOG3359|consen 240 WCLLGDLGLSIKQIVKHLLARLF--FLIGIPFLI 271 (723)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHH--HHHHHHHHH
Confidence 2335566666655554 467889865
No 31
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=28.41 E-value=34 Score=30.41 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHHHhhccccccCHHHHHHHhhhhccccccccccCCCCCCccccchhHHHHHHHHHHh-ccchHH
Q 014346 39 ALIITYVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAGFLYVYSAIQYIT-GGEVYS 102 (426)
Q Consensus 39 ~~II~~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lT-G~~I~~ 102 (426)
+-++|.|.=-||| ||+++.+-..|-..+.|+--||=|-|-+=.+=-.=|.+. |.||..
T Consensus 4 ~~~~W~vkNG~~D------eVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~ 62 (117)
T KOG4214|consen 4 MSVAWNVKNGEID------EVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQD 62 (117)
T ss_pred hhHhhhhccCcHH------HHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCC
Confidence 3467888888888 899887544899999999999999998877643334444 888753
No 32
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.35 E-value=41 Score=36.71 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=25.3
Q ss_pred CHHHHHHHhhhhccc---cccccccCCCCCCccc
Q 014346 51 DWDAYMSQVSGFLEG---ERDYSNLKGDTGPLVY 81 (426)
Q Consensus 51 Dw~AYMqqv~~~l~G---e~DYs~i~GdTGPLVY 81 (426)
-+.+|.||.+|=-|| +||=.-..-+|||+||
T Consensus 348 rF~~YlQQ~~MESnGK~vt~~g~~v~~~tG~ivw 381 (546)
T KOG2446|consen 348 RFAAYLQQLSMESNGKEVTRDGNPVNYSTGLIVW 381 (546)
T ss_pred HHHHHHHHhhhhhcCceeecCCccccccccceee
Confidence 588999999998888 4565566667999998
No 33
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=26.73 E-value=19 Score=36.20 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred cCCCChhHHHHH----HHHHHhhcccCCCchh
Q 014346 363 RTPFPTLLRLIL----FMGVELCWNVYPSNIY 390 (426)
Q Consensus 363 ~t~~p~~~~~~~----~~~~E~~WNvyPST~~ 390 (426)
.+++|..++-++ +.++|-|||.||=+-+
T Consensus 64 ~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T 95 (251)
T cd07815 64 GSKLPSWLRALAPKSALTIEEKSWNAYPYCKT 95 (251)
T ss_pred cccchhHHHHhCCccceEEEhhhhCCCCceeE
Confidence 456777776554 7889999999998764
No 34
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=26.60 E-value=1.9e+02 Score=29.84 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhHHhhcCCCChhHHHHHHHHHHhhccc----CCCchhHHHHHHHHHHH-HH
Q 014346 329 TTMFAGNFIGIVCARSLHYQFYLWYFYSLPYLLWRTPFPTLLRLILFMGVELCWNV----YPSNIYSSLLLLCLHLV-IL 403 (426)
Q Consensus 329 ~~l~tsNfIGi~fARSLHYQFy~WY~~tlP~LLw~t~~p~~~~~~~~~~~E~~WNv----yPST~~SS~~L~~~~~~-lL 403 (426)
.++++||.+||+.=||+ |...+=.-.-.|+|-+.. ..++.++..+...+. =.|+..|-++..++... ++
T Consensus 221 ~iV~tsnifaIlgLR~l-yf~l~~ll~rf~~L~~~~-----a~iL~fIGvkmll~~~~~~~ip~~~sl~vi~~~l~~~i~ 294 (302)
T TIGR03718 221 FIVFTSNIFAILGLRSL-YFLLAGLLERFHYLKYGL-----AVILVFIGVKMLLHATDVYHIPIGVSLGVIVGILAVSIV 294 (302)
T ss_pred eEEehHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHhhcCcCCCChhHHHHHHHHHHHHHHH
Confidence 46889999999999999 444555556667775542 334455555555442 25566666655555443 33
Q ss_pred HHH
Q 014346 404 YGL 406 (426)
Q Consensus 404 ~~l 406 (426)
.++
T Consensus 295 ~Sl 297 (302)
T TIGR03718 295 ASL 297 (302)
T ss_pred HHh
Confidence 343
No 35
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=24.91 E-value=24 Score=35.72 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=20.9
Q ss_pred cCCCChhHHHHH----HHHHHhhcccCCCchh
Q 014346 363 RTPFPTLLRLIL----FMGVELCWNVYPSNIY 390 (426)
Q Consensus 363 ~t~~p~~~~~~~----~~~~E~~WNvyPST~~ 390 (426)
.+++|..++-++ +.++|-|||.||=|-+
T Consensus 66 ~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T 97 (260)
T cd08889 66 GSHIPGWFRAILPKSALRVEEEAWNAYPYTRT 97 (260)
T ss_pred cccChHHHHHhCCCcceEEehhHhCCCCceEE
Confidence 456777776544 4689999999998754
No 36
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=24.79 E-value=60 Score=22.02 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=15.4
Q ss_pred hhhhhhhhhhhhcchhHHHHHHHHH
Q 014346 140 KRVHSIFVLRLFNDCFAMTFLHAAL 164 (426)
Q Consensus 140 kRlHSIfVLRLFND~~a~~~l~~ai 164 (426)
+|+|+ .|+|-.|.+++..++
T Consensus 2 ~~LH~-----w~~~i~al~~lv~~i 21 (27)
T PF03929_consen 2 NDLHK-----WFGDIFALFMLVFAI 21 (27)
T ss_pred hHHHH-----HHHHHHHHHHHHHHH
Confidence 68898 778888887777665
No 37
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.50 E-value=5.5e+02 Score=28.66 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=77.7
Q ss_pred cccccccccCCCCCCccccchhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-CchHHHHHhhhhh
Q 014346 64 EGERDYSNLKGDTGPLVYPAGFLYVYSAIQYITGGEVYSAQIFFAFLYLINLGIVLFVYVK-TDVL-PWWGLSLLCLSKR 141 (426)
Q Consensus 64 ~Ge~DYs~i~GdTGPLVYPAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lYl~tl~lv~~iY~~-~~~v-Pp~~l~ll~lSkR 141 (426)
.|+..|.-|. +||+.| ++=.+...+-|.+=..|..+=+..= +-+.++..+|++ .++. =-+...++..|-=
T Consensus 55 ~Gaw~YrPi~--HGPfL~-----hvn~avF~~lGasDataRlvvAv~G-~llpL~awL~R~rL~d~evlal~~LLA~sPv 126 (556)
T COG4745 55 QGAWSYRPIY--HGPFLY-----HVNYAVFGLLGASDATARLVVAVTG-VLLPLTAWLYRTRLGDKEVLALATLLAFSPV 126 (556)
T ss_pred cCcceecccc--cCchhh-----hhhhhhhhhcccchhhhhhhHHHhh-hHHHHHHHHHHHhccchHHHHHHHHHhcChh
Confidence 5999999986 588744 2333333344766555554433221 224456677775 3321 2244445555543
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHhh-----hhhh--HHHHHHHhhhhhchhhhhhhhhHH
Q 014346 142 VHSIFVLRLFNDCFAMTFLHAALALLLD-----QRWH--LGLIIFSVAVSIKMNVLLYAPPLF 197 (426)
Q Consensus 142 lHSIfVLRLFND~~a~~~l~~ai~l~~~-----~~w~--~g~~~ySlavSIKMN~LLf~Pall 197 (426)
+ -.|-.=|=||-+-.+|+.+++.++.| |.|. .++..+.+|+--|=|+||+.-.++
T Consensus 127 l-VYYSRFmR~Dl~la~ftl~aVg~~vR~lDt~R~~yL~~sA~~lalAftaKEnall~~~~f~ 188 (556)
T COG4745 127 L-VYYSRFMRNDLLLAAFTLLAVGFAVRYLDTERFRYLYASAVSLALAFTAKENALLYVAAFL 188 (556)
T ss_pred h-hhHHHHHhhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceeHHHHHh
Confidence 2 22333345999999999999998874 4454 466777888899999999976665
No 38
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=22.41 E-value=1.1e+03 Score=26.26 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=85.7
Q ss_pred HhhccccccCHHHHHHHhhhhc-ccccccccc----CCCCCCccccchhHHHHHHHHHHhccchHHHHHHHHHHHH-HHH
Q 014346 42 ITYVPYTKIDWDAYMSQVSGFL-EGERDYSNL----KGDTGPLVYPAGFLYVYSAIQYITGGEVYSAQIFFAFLYL-INL 115 (426)
Q Consensus 42 I~~VpYTEIDw~AYMqqv~~~l-~Ge~DYs~i----~GdTGPLVYPAGfVyiYs~Ly~lTG~~I~~aQ~IF~~lYl-~tl 115 (426)
..-.+-.+-|=..|.|-.+..+ +|+.=--.+ .-|..|+.| |+=.+.+++.|.|-. |--+...+.. ++.
T Consensus 23 L~~r~lw~~DE~ryA~iareMl~sGdWlvP~~~g~~y~eKPPL~y-----Wl~Als~~LFG~~~~-a~RLpsaL~~~lt~ 96 (552)
T PRK13279 23 LNTRLLWQPDETRYAEISREMLASGDWIVPHFLGLRYFEKPIAGY-----WINSIGQWLFGDNNF-GVRFGSVFSTLLSA 96 (552)
T ss_pred hcCCCCCCCchHHHHHHHHHHHHhCCcCccccCCCcCCCCCcHHH-----HHHHHHHHHcCCCcH-HHHHHHHHHHHHHH
Confidence 3344455667788888876544 563211111 224555543 787888888886533 2233333322 233
Q ss_pred HHHHHHHHhc-CC-CCchHHHHHhh-hhhh--hhhhhhhhhcchhHHHHHHHHHHHHh---h-----hh---hhHHHHHH
Q 014346 116 GIVLFVYVKT-DV-LPWWGLSLLCL-SKRV--HSIFVLRLFNDCFAMTFLHAALALLL---D-----QR---WHLGLIIF 179 (426)
Q Consensus 116 ~lv~~iY~~~-~~-vPp~~l~ll~l-SkRl--HSIfVLRLFND~~a~~~l~~ai~l~~---~-----~~---w~~g~~~y 179 (426)
.++..+=++. +. -.-+.-.++.+ |=-+ |+-+. --|+..++++.+|+..+. + ++ |.+..+.-
T Consensus 97 llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a---~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllGla~ 173 (552)
T PRK13279 97 LLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYA---VLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLGLAC 173 (552)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHH
Confidence 3333222221 11 01222222222 2111 11111 128888888877765542 1 12 33444566
Q ss_pred HhhhhhchhhhhhhhhHHHHHHH--hcChHHHHHHHHHHHHHHHHhhccc
Q 014346 180 SVAVSIKMNVLLYAPPLFLLLLK--ALGIFGVISTLASAALVQILFGFPF 227 (426)
Q Consensus 180 SlavSIKMN~LLf~Pallv~l~~--~~g~~~~~~~l~i~~~vQvllg~PF 227 (426)
++|+=.|-.+-+..|++.++.+. .....+......+..++=+++++|.
T Consensus 174 Glg~LTKG~ial~lP~l~il~~ll~~rr~~~ll~~~~l~llvalli~lPW 223 (552)
T PRK13279 174 GMGFMTKGFLALAVPVISVLPWVIWQKRWKELLIYGPLAVLSAVLVSLPW 223 (552)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998899976654433 2334333332222233334445554
No 39
>COG4146 Predicted symporter [General function prediction only]
Probab=22.38 E-value=1.4e+02 Score=32.43 Aligned_cols=124 Identities=17% Similarity=0.230 Sum_probs=75.7
Q ss_pred HHHHhhhhcc-ccccccccCCCCCCccccchh--HHHHHHHHHHh---------c-cchHHHH--HHHHHHHHHHHHHHH
Q 014346 55 YMSQVSGFLE-GERDYSNLKGDTGPLVYPAGF--LYVYSAIQYIT---------G-GEVYSAQ--IFFAFLYLINLGIVL 119 (426)
Q Consensus 55 YMqqv~~~l~-Ge~DYs~i~GdTGPLVYPAGf--VyiYs~Ly~lT---------G-~~I~~aQ--~IF~~lYl~tl~lv~ 119 (426)
+||-+|+... ..-....|.|||-|+=.||-| +.+-..+||-| | +|...+| ..+++++.++..+++
T Consensus 217 fa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~L 296 (571)
T COG4146 217 FAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVL 296 (571)
T ss_pred HhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHh
Confidence 4666666652 223567899999999999987 35567788888 2 5777788 488888888876665
Q ss_pred -----HHHHhcCCCCchHHHHHhhhhhhhhhhhhhhhcchhHHHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 014346 120 -----FVYVKTDVLPWWGLSLLCLSKRVHSIFVLRLFNDCFAMTFLHAALALLLDQRWHLGLIIFSVAV 183 (426)
Q Consensus 120 -----~iY~~~~~vPp~~l~ll~lSkRlHSIfVLRLFND~~a~~~l~~ai~l~~~~~w~~g~~~ySlav 183 (426)
.-|..-+.+||-=+.-..|-+| ||-.+=-++-...++.||+-=-++--+-++.+||+.+
T Consensus 297 vLPGliafhlygdL~~aDmaYP~LVn~-----VlPv~l~GFf~AvLFGAilStFN~fLNSa~Tlf~~di 360 (571)
T COG4146 297 VLPGLIAFHLYGDLPKADMAYPTLVNN-----VLPVPLVGFFGAVLFGAILSTFNGFLNSASTLFSMDI 360 (571)
T ss_pred hhhHHHHHHHhccCCccccccHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh
Confidence 2344445567654444444333 3333334444445555555444444445566666543
No 40
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=21.02 E-value=30 Score=34.77 Aligned_cols=28 Identities=32% Similarity=0.679 Sum_probs=18.0
Q ss_pred cCCCChhHHHHH---HHHHHhhcccCCCchh
Q 014346 363 RTPFPTLLRLIL---FMGVELCWNVYPSNIY 390 (426)
Q Consensus 363 ~t~~p~~~~~~~---~~~~E~~WNvyPST~~ 390 (426)
.+++|..++-++ +.++|-|||.||=|-+
T Consensus 64 ~sklP~w~r~~~P~~l~v~EkaWNaYPy~~T 94 (250)
T cd08890 64 NSRLPSWARAVVPKIFYVTEKAWNYYPYTIT 94 (250)
T ss_pred cccChhHHHHhCCcceEEehhhhccCCceee
Confidence 344555444322 3679999999997644
No 41
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=20.57 E-value=66 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.6
Q ss_pred eEeeeeeeeecCccCCCCchHHHHHH
Q 014346 247 IHFWSVNFKFVPEPVFVSKGFAISLL 272 (426)
Q Consensus 247 lykWTVNWrFv~Ee~F~s~~F~~~LL 272 (426)
-|+|+-.|+|-..|.-..+....+|.
T Consensus 27 ~f~W~F~W~F~~G~L~V~PslGRALI 52 (80)
T PF11344_consen 27 GFEWQFQWHFRRGELSVEPSLGRALI 52 (80)
T ss_pred ceEEEEEEEEcCCcEEEccccchHHH
Confidence 48999999999999988888877764
Done!