Query 014346
Match_columns 426
No_of_seqs 123 out of 210
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vla_A Bpuji, restriction endo 14.7 64 0.0022 31.6 1.8 35 81-115 115-150 (285)
2 4gio_A Putative lipoprotein; u 14.7 14 0.00048 31.0 -2.5 11 342-353 49-59 (107)
3 3a5f_A Dihydrodipicolinate syn 12.5 75 0.0026 30.2 1.6 34 45-78 12-47 (291)
4 1ghh_A DINI, DNA-damage-induci 11.9 47 0.0016 26.9 -0.1 25 122-146 7-33 (81)
5 3n7x_A Capsid protein; icosahe 11.7 66 0.0023 30.5 0.9 31 45-75 183-216 (329)
6 2wkj_A N-acetylneuraminate lya 10.4 1.2E+02 0.0041 29.0 2.3 34 46-79 22-58 (303)
7 2pcq_A Putative dihydrodipicol 10.3 1.5E+02 0.005 28.0 2.8 33 46-79 9-44 (283)
8 1xky_A Dihydrodipicolinate syn 9.3 1.4E+02 0.0048 28.5 2.3 34 46-79 23-59 (301)
9 2nuw_A 2-keto-3-deoxygluconate 8.8 1.5E+02 0.0051 28.1 2.2 34 46-79 10-46 (288)
10 1ha8_A Pheromone, ER-23; NMR { 8.8 95 0.0032 22.6 0.6 23 62-84 7-34 (51)
No 1
>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus}
Probab=14.70 E-value=64 Score=31.60 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=30.5
Q ss_pred ccchhHHHHHHHHHHh-ccchHHHHHHHHHHHHHHH
Q 014346 81 YPAGFLYVYSAIQYIT-GGEVYSAQIFFAFLYLINL 115 (426)
Q Consensus 81 YPAGfVyiYs~Ly~lT-G~~I~~aQ~IF~~lYl~tl 115 (426)
||+||...-.++-.+- |-.++.+|+|-..+--+-.
T Consensus 115 yP~gh~K~~~I~~~i~~~I~fkP~~yil~ll~~a~~ 150 (285)
T 2vla_A 115 FPNGMDKLDKVIEKVGAKIQIRQFPYILQVLLTADN 150 (285)
T ss_dssp BSCSSSCHHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHhcCCeeccHHHHHHHHHhccc
Confidence 9999999999999998 9999999999887765544
No 2
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=14.65 E-value=14 Score=30.99 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=9.1
Q ss_pred hcccchhhHHHH
Q 014346 342 ARSLHYQFYLWY 353 (426)
Q Consensus 342 ARSLHYQFy~WY 353 (426)
.+.|||+|| ||
T Consensus 49 ~~~l~Yrf~-Wy 59 (107)
T 4gio_A 49 AKDVIYKVD-WL 59 (107)
T ss_dssp CEEEEEEEE-EE
T ss_pred ceEEEEEEE-EE
Confidence 578999998 66
No 3
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=12.50 E-value=75 Score=30.16 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=27.4
Q ss_pred ccccc--cCHHHHHHHhhhhccccccccccCCCCCC
Q 014346 45 VPYTK--IDWDAYMSQVSGFLEGERDYSNLKGDTGP 78 (426)
Q Consensus 45 VpYTE--IDw~AYMqqv~~~l~Ge~DYs~i~GdTGP 78 (426)
-|+|| ||++++-+.++-..++..|---+-|.||=
T Consensus 12 TPf~~dgiD~~~l~~lv~~li~~Gv~gl~~~GttGE 47 (291)
T 3a5f_A 12 TPFTNTGVDFDKLSELIEWHIKSKTDAIIVCGTTGE 47 (291)
T ss_dssp CCBCSSSBCHHHHHHHHHHHHHTTCCEEEESSGGGT
T ss_pred cCcCCCCcCHHHHHHHHHHHHHcCCCEEEECccccC
Confidence 37776 99999999999988777787767777764
No 4
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=11.93 E-value=47 Score=26.86 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=17.3
Q ss_pred HHhcCCCCchHHHHHh--hhhhhhhhh
Q 014346 122 YVKTDVLPWWGLSLLC--LSKRVHSIF 146 (426)
Q Consensus 122 Y~~~~~vPp~~l~ll~--lSkRlHSIf 146 (426)
|.+.+++|+=.+-.+- |+||+|.+|
T Consensus 7 ~dK~~~lp~ga~~aL~~EL~kRl~~~f 33 (81)
T 1ghh_A 7 IAKTSPLPAGAIDALAGELSRRIQYAF 33 (81)
T ss_dssp EETTSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCChhHHHHHHHHHHHHHHhhC
Confidence 3345567876666553 899999876
No 5
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=11.74 E-value=66 Score=30.52 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=19.1
Q ss_pred ccccccCHHHHHHHh---hhhccccccccccCCC
Q 014346 45 VPYTKIDWDAYMSQV---SGFLEGERDYSNLKGD 75 (426)
Q Consensus 45 VpYTEIDw~AYMqqv---~~~l~Ge~DYs~i~Gd 75 (426)
|.-|.-+++.=+||. |+...|+|.--.|.||
T Consensus 183 vqstaanyedpiqqfgfmeqmrtgdrkaytihgd 216 (329)
T 3n7x_A 183 VQSTAANYEDPIQQFGFMEQMRTGDRKAYTIHGD 216 (329)
T ss_dssp SCTTCCSTTHHHHHCSEEEEECTTCEEEEEEECC
T ss_pred EeeccccccCHHHHhhHHHHhhcCCceeEEeccc
Confidence 556777777777775 3445676654445554
No 6
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=10.41 E-value=1.2e+02 Score=28.99 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=28.0
Q ss_pred ccc---ccCHHHHHHHhhhhccccccccccCCCCCCc
Q 014346 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL 79 (426)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL 79 (426)
|+| +||++++-+.++-..++..|---+-|.||=-
T Consensus 22 PF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~ 58 (303)
T 2wkj_A 22 PFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEA 58 (303)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCSEEEESSTTTTG
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECeeccCh
Confidence 666 5999999999999887778887778888753
No 7
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=10.29 E-value=1.5e+02 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=27.2
Q ss_pred ccc---ccCHHHHHHHhhhhccccccccccCCCCCCc
Q 014346 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL 79 (426)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL 79 (426)
|+| +||++++-+.++-..++ .|---+-|.||=-
T Consensus 9 Pf~~dg~iD~~~l~~lv~~li~~-v~gl~v~GttGE~ 44 (283)
T 2pcq_A 9 PFDREGRLDEEAFRELAQALEPL-VDGLLVYGSNGEG 44 (283)
T ss_dssp CBCTTCCBCHHHHHHHHHHHGGG-SSCCEETCTTTTG
T ss_pred CCCCCCCcCHHHHHHHHHHHHhh-CCEEEECCcCcCc
Confidence 665 59999999999999888 8887777888753
No 8
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=9.28 E-value=1.4e+02 Score=28.49 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.1
Q ss_pred ccc---ccCHHHHHHHhhhhccccccccccCCCCCCc
Q 014346 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL 79 (426)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL 79 (426)
|+| +||++++-+.++-..++..|---+-|.||=-
T Consensus 23 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~ 59 (301)
T 1xky_A 23 PFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTGES 59 (301)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCh
Confidence 666 5999999999999887778887778888754
No 9
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=8.80 E-value=1.5e+02 Score=28.06 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=27.1
Q ss_pred ccc---ccCHHHHHHHhhhhccccccccccCCCCCCc
Q 014346 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTGPL 79 (426)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPL 79 (426)
|+| +||+++.-+.++-..++..|---+-|.||=-
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~ 46 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLEKGIDAIFVNGTTGLG 46 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCCEEEETSTTTTG
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccCh
Confidence 665 5999999999998887777877777777753
No 10
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Probab=8.80 E-value=95 Score=22.61 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=14.8
Q ss_pred hccccccccccCCCCCCcc-----ccch
Q 014346 62 FLEGERDYSNLKGDTGPLV-----YPAG 84 (426)
Q Consensus 62 ~l~Ge~DYs~i~GdTGPLV-----YPAG 84 (426)
|.||.---+-...+|||+- ||||
T Consensus 7 fsdggdcttcfnngtgpcanclagypag 34 (51)
T 1ha8_A 7 FSDGGDCTTCFNNGTGPCANCLAGYPAG 34 (51)
T ss_dssp HHTTCCSHHHHTTTTSSTTTTTSSCTTS
T ss_pred hcCCCccceeecCCCcchhhhhccCCCC
Confidence 4455433344567899974 9998
Done!