Query 014346
Match_columns 426
No_of_seqs 123 out of 210
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 09:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014346.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014346hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2omoa1 d.58.4.11 (A:1-98) Hyp 45.7 3.4 0.00025 30.7 1.3 28 52-84 71-98 (98)
2 d1ghha_ d.57.1.1 (A:) DNA dama 18.5 11 0.00083 28.6 -0.1 25 122-146 7-33 (81)
3 d1i60a_ c.1.15.4 (A:) Hypothet 10.4 51 0.0037 27.6 1.9 21 49-80 224-244 (278)
4 d1t27a_ d.129.3.4 (A:) Phoshat 9.2 19 0.0014 32.8 -1.5 27 364-390 66-96 (269)
5 d1ha8a_ g.58.1.1 (A:) Pheromon 8.8 45 0.0032 22.6 0.6 23 62-84 7-34 (51)
6 d2hkja2 d.14.1.3 (A:307-470) T 8.4 50 0.0036 27.9 0.9 8 48-55 87-94 (164)
7 d1sddb1 b.6.1.3 (B:1657-1723) 8.3 47 0.0035 23.8 0.6 11 243-253 6-16 (67)
8 d2c9qa1 b.1.18.17 (A:1-102) Co 6.4 97 0.0071 22.8 1.7 13 249-261 78-90 (102)
9 d2a90a2 d.289.1.1 (A:132-211) 5.7 26 0.0019 25.4 -2.1 34 44-83 45-78 (80)
10 d1xxxa1 c.1.10.1 (A:5-300) Dih 5.4 1.4E+02 0.0099 25.6 2.3 32 46-77 18-52 (296)
No 1
>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621 {Nitrosomonas europaea [TaxId: 915]}
Probab=45.69 E-value=3.4 Score=30.71 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=23.7
Q ss_pred HHHHHHHhhhhccccccccccCCCCCCccccch
Q 014346 52 WDAYMSQVSGFLEGERDYSNLKGDTGPLVYPAG 84 (426)
Q Consensus 52 w~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPAG 84 (426)
+++|++++..++.|.++-..+.+ |||||
T Consensus 71 ~~~~~~~~~~ll~~p~~~~~~~~-----v~p~~ 98 (98)
T d2omoa1 71 YLTWRDTVADWMAEPRKGVIYGG-----LYPTG 98 (98)
T ss_dssp HHHHHHHHGGGBSSCCEEEEEEE-----EESCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEE-----ecCCC
Confidence 67889999999999988777665 88988
No 2
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=18.51 E-value=11 Score=28.62 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=19.1
Q ss_pred HHhcCCCCchHHHHHh--hhhhhhhhh
Q 014346 122 YVKTDVLPWWGLSLLC--LSKRVHSIF 146 (426)
Q Consensus 122 Y~~~~~vPp~~l~ll~--lSkRlHSIf 146 (426)
|.|.+++|+=.+-.+- |+||+|.+|
T Consensus 7 ~dK~~~lp~ga~~aL~~EL~kRl~~~f 33 (81)
T d1ghha_ 7 IAKTSPLPAGAIDALAGELSRRIQYAF 33 (81)
T ss_dssp EETTSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred eecccCCCchHHHHHHHHHHHHHHhhC
Confidence 3455668887777664 899999998
No 3
>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}
Probab=10.38 E-value=51 Score=27.59 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=14.2
Q ss_pred ccCHHHHHHHhhhhccccccccccCCCCCCcc
Q 014346 49 KIDWDAYMSQVSGFLEGERDYSNLKGDTGPLV 80 (426)
Q Consensus 49 EIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLV 80 (426)
||||+++++.++. .|.+||++
T Consensus 224 ~id~~~~~~~l~~-----------~gy~G~~~ 244 (278)
T d1i60a_ 224 AIDLDAHLSALKE-----------IGFSDVVS 244 (278)
T ss_dssp SSCHHHHHHHHHH-----------TTCCSEEE
T ss_pred ccCHHHHHHHHHH-----------HCCCeEEE
Confidence 6777777777665 46667764
No 4
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.18 E-value=19 Score=32.75 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCCChhHHHH----HHHHHHhhcccCCCchh
Q 014346 364 TPFPTLLRLI----LFMGVELCWNVYPSNIY 390 (426)
Q Consensus 364 t~~p~~~~~~----~~~~~E~~WNvyPST~~ 390 (426)
+++|..++-+ .+.++|-|||.||-|-+
T Consensus 66 sklP~wir~~~P~~al~v~EkaWNaYPy~~T 96 (269)
T d1t27a_ 66 SKVPTFVRMLAPEGALNIHEKAWNAYPYCRT 96 (269)
T ss_dssp TTSCHHHHTTSCTTTTCEEEEEEEETTEEEE
T ss_pred hhChHHHHHhCCccccEEEEEeeccCceeEE
Confidence 4455555432 56789999999997753
No 5
>d1ha8a_ g.58.1.1 (A:) Pheromone ER-23 {Euplotes raikovi [TaxId: 5938]}
Probab=8.80 E-value=45 Score=22.61 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=14.8
Q ss_pred hccccccccccCCCCCCcc-----ccch
Q 014346 62 FLEGERDYSNLKGDTGPLV-----YPAG 84 (426)
Q Consensus 62 ~l~Ge~DYs~i~GdTGPLV-----YPAG 84 (426)
|.||.---+-...+|||+- ||||
T Consensus 7 fsdggdcttcfnngtgpcanclagypag 34 (51)
T d1ha8a_ 7 FSDGGDCTTCFNNGTGPCANCLAGYPAG 34 (51)
T ss_dssp HHTTCCSHHHHTTTTSSTTTTTSSCTTS
T ss_pred hcCCCccceeecCCCcchhhhhccCCCC
Confidence 4455433344567899974 9998
No 6
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=8.41 E-value=50 Score=27.95 Aligned_cols=8 Identities=38% Similarity=1.269 Sum_probs=7.1
Q ss_pred cccCHHHH
Q 014346 48 TKIDWDAY 55 (426)
Q Consensus 48 TEIDw~AY 55 (426)
.+|||+.|
T Consensus 87 ~~inW~~Y 94 (164)
T d2hkja2 87 EELDWKRY 94 (164)
T ss_dssp HHSCGGGG
T ss_pred HhcChhhc
Confidence 58999999
No 7
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.31 E-value=47 Score=23.76 Aligned_cols=11 Identities=9% Similarity=0.610 Sum_probs=8.9
Q ss_pred cceeeEeeeee
Q 014346 243 GRVFIHFWSVN 253 (426)
Q Consensus 243 ~R~FlykWTVN 253 (426)
|.+|.|+|+|+
T Consensus 6 G~t~tY~w~v~ 16 (67)
T d1sddb1 6 NKTYTYVWHAT 16 (67)
T ss_dssp TCCEECCEECC
T ss_pred CCeEEEEEEcC
Confidence 67889999885
No 8
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}
Probab=6.39 E-value=97 Score=22.78 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.6
Q ss_pred eeeeeeeecCccC
Q 014346 249 FWSVNFKFVPEPV 261 (426)
Q Consensus 249 kWTVNWrFv~Ee~ 261 (426)
++||.||.++++-
T Consensus 78 ~Y~V~wrvvs~DG 90 (102)
T d2c9qa1 78 TYKVDWRAVSSDT 90 (102)
T ss_dssp EEEEEEEECCTTC
T ss_pred eEEEEEEEEecCC
Confidence 5889999998873
No 9
>d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.67 E-value=26 Score=25.37 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=21.0
Q ss_pred hccccccCHHHHHHHhhhhccccccccccCCCCCCccccc
Q 014346 44 YVPYTKIDWDAYMSQVSGFLEGERDYSNLKGDTGPLVYPA 83 (426)
Q Consensus 44 ~VpYTEIDw~AYMqqv~~~l~Ge~DYs~i~GdTGPLVYPA 83 (426)
.-+|+ ||+++ |.|+.. ..|.. ..|+=-..| .||+
T Consensus 45 ~~~Y~-IDf~~-m~Q~n~-~tg~~--R~IrR~~~~-~~p~ 78 (80)
T d2a90a2 45 GLPYT-INFSN-LTQLRQ-PSGPM--RSIRRTQQA-PYPL 78 (80)
T ss_dssp SCCEE-EETTT-TEEEET-TTCCE--EEEEEEECC-CCCE
T ss_pred CccEE-EECCC-CEEEeC-CCCCE--EeeEecCCC-CCCc
Confidence 44777 99999 888864 44543 445544444 5663
No 10
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.38 E-value=1.4e+02 Score=25.63 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=22.3
Q ss_pred ccc---ccCHHHHHHHhhhhccccccccccCCCCC
Q 014346 46 PYT---KIDWDAYMSQVSGFLEGERDYSNLKGDTG 77 (426)
Q Consensus 46 pYT---EIDw~AYMqqv~~~l~Ge~DYs~i~GdTG 77 (426)
|+| +||++++-++|+-..+.-.|---+-|.||
T Consensus 18 Pf~~dg~iD~~~l~~~i~~li~~Gv~Gi~v~G~tG 52 (296)
T d1xxxa1 18 PFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTG 52 (296)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCSEEEESSTTT
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCCEEEECeecc
Confidence 666 69999999999988765455444444444
Done!