BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014349
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 609 bits (1571), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/422 (70%), Positives = 342/422 (81%), Gaps = 3/422 (0%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
MVTPLG G ETTWRRLI GECGIR +T +DLKM +FD ET+L+ F QL+SKVAA VP G
Sbjct: 10 MVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGS 69
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+ GEF+E WLNSK ++A FI YA+CAADEAL DA+WLP+++ +KERTGV
Sbjct: 70 NPGEFDEALWLNSK---AVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSIGGGIGS 126
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
D V+AAQ+ICEKRLRRLSPFFIP+IL+NMASGHVSMKYGFQGPNHAAVTACATGAHSI
Sbjct: 127 ICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSI 186
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
GDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N +PQEASRPFDC RDGF
Sbjct: 187 GDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGF 246
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HAK+RGAKIYAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+Q
Sbjct: 247 VIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
SGL +Q+DYVNAHATSTP+GD VEA AI+TVFS+HATSG+LAFSSTK
Sbjct: 307 SGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGA 366
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VEAIF++LAIHHGVAP+TLN+ PDPIF+ FMPLT SK M + A+SNSFGFGGTNASL
Sbjct: 367 VEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASL 426
Query: 421 LF 422
LF
Sbjct: 427 LF 428
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 252/425 (59%), Gaps = 19/425 (4%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+V+PL G E TW+RL+ GE G R +T ++ L ++A +P G
Sbjct: 19 LVSPLASGVEETWKRLLAGESGARRVTEFEVD--------------DLACQIACRIPVGD 64
Query: 61 -SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXX 119
++G FN D ++ K+ R + FI YA+ AAD+AL DA W P + + RTGV
Sbjct: 65 GTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGIG 124
Query: 120 XXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHS 179
V+A + +K RR+SPFFIP LIN+ASGHVS+K+ +GPNH+ VTACATG H+
Sbjct: 125 GIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHA 184
Query: 180 IGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 239
IGDAAR+I FGD+DVMVAGGTES + +S+AGF +AL+T+ N P ASRP+D RDG
Sbjct: 185 IGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDG 244
Query: 240 FXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 299
F HA RGAKIYAEV GYGMSGDA HIT P G+GA M ALK
Sbjct: 245 FVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALK 304
Query: 300 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXX 359
++G+ ++DY+NAH TST + DT+E A+ V + A ++ SSTK
Sbjct: 305 RAGIVPDEIDYINAHGTST-MADTIELGAVERVVGEAAA--KISMSSTKSSIGHLLGAAG 361
Query: 360 XVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 419
EA+F+ LAI +AP TLNL P + +P ++ I ALSNSFGFGGTNAS
Sbjct: 362 AAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVP-HKPRERKIDVALSNSFGFGGTNAS 420
Query: 420 LLFTK 424
L+ +
Sbjct: 421 LVLRR 425
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/422 (43%), Positives = 245/422 (58%), Gaps = 20/422 (4%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+VTPLG G W RLI GE GI + E+ K + VAA VP G
Sbjct: 30 LVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK--------------SIPCSVAAYVPRGS 75
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TGV
Sbjct: 76 DEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIP 135
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TAC TGAH++
Sbjct: 136 LEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAV 195
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF RDGF
Sbjct: 196 GDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPKRDGF 253
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M ALK
Sbjct: 254 VMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKD 313
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA SSTK
Sbjct: 314 AGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALAVSSTKGATGHLLGAAGA 371
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFGGTNA 418
VEA F LA ++ P TLNL +P F+ N++PL A K L+NSFGFGGTNA
Sbjct: 372 VEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNA 431
Query: 419 SL 420
+L
Sbjct: 432 TL 433
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/424 (42%), Positives = 245/424 (57%), Gaps = 27/424 (6%)
Query: 2 VTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGIS 61
+TP+G G E + + G+ G+R IT FD L ++AA V
Sbjct: 12 LTPIGVGQEAFHKAQLAGKSGVRPIT-------RFDASA-------LPVRIAAEV----- 52
Query: 62 SGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXX 121
+ + ++L+ K+ R + RF+ YAL AA AL DA P D ER G
Sbjct: 53 --DVDPGAYLDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGIGGM 109
Query: 122 XDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIG 181
+++ E+ R+SPFFIP ++ NMAS H++M+YGF GP+ VTACATGA ++G
Sbjct: 110 ETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALG 169
Query: 182 DAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFX 241
A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N P++ASRPF RDGF
Sbjct: 170 SALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLSRDGFV 228
Query: 242 XXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 301
HAKKRGA+IYAE+ G+G S DAHHIT+PH +GKGA LAM RALK +
Sbjct: 229 MGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDA 288
Query: 302 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXV 361
G+ QV Y+NAH TSTP+GD E AI+ VF DHA L SSTK V
Sbjct: 289 GIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAK--RLMVSSTKSMIGHLLGAAGAV 346
Query: 362 EAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 421
EAI V A++HGV P T+NL PDP + +F+P ++ + ALSNSF FGG NA L
Sbjct: 347 EAIATVQALYHGVIPPTINLEDPDPELDLDFVP--EPREAKVDYALSNSFAFGGHNAVLA 404
Query: 422 FTKC 425
F +
Sbjct: 405 FKRV 408
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/422 (43%), Positives = 244/422 (57%), Gaps = 20/422 (4%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+VTPLG G W RLI GE GI + E+ K + VAA VP G
Sbjct: 36 LVTPLGVGTHLVWDRLIGGESGIVSLVGEEYK--------------SIPCSVAAYVPRGS 81
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
G+FNE ++++ D +S++ A+ AA+ A+ D+ W P + + TGV
Sbjct: 82 DEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIP 141
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ A K ++SPFF+P+IL+NMA+G VS++Y +GPNHA TA TGAH++
Sbjct: 142 LEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAV 201
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N P+ A RPF RDGF
Sbjct: 202 GDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--NSDPKLACRPFHPKRDGF 259
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HA +R A+IYAEV GYG+SGDA HIT P +G+GA+ M ALK
Sbjct: 260 VMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKD 319
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA SSTK
Sbjct: 320 AGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALAVSSTKGATGHLLGAAGA 377
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDMPISAALSNSFGFGGTNA 418
VEA F LA ++ P TLNL +P F+ N++PL A K L+NSFGFGGTNA
Sbjct: 378 VEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNA 437
Query: 419 SL 420
+L
Sbjct: 438 TL 439
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 190/425 (44%), Positives = 256/425 (60%), Gaps = 19/425 (4%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+V+PL E +W+RL+ G+ G+R IT D+ L+ ++AA +P G
Sbjct: 15 LVSPLAGDVEYSWKRLLEGKSGVRRITEFDVS--------------DLSCQIAARIPVGD 60
Query: 61 -SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXX 119
++G +N D + SK+ R + FI YA+ AAD+AL DA+W P + TGV
Sbjct: 61 GTNGTYNADLHMESKEQRKVDAFIVYAIAAADQALADAEWFPKSDEDQICTGVLIGSGIG 120
Query: 120 XXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHS 179
V+A + +K RR+SPFFIP LIN+ASG+VS+KYG +GPNH+ VTAC+TGAH+
Sbjct: 121 GIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHA 180
Query: 180 IGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 239
IGDAAR+I GD+DVM+AGGTES I+ +S+AGF RAL+T N P+ ASRP+D RDG
Sbjct: 181 IGDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDG 240
Query: 240 FXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 299
F HAKKRGA+IYAE+ GYG+SGDA+HIT P G+GA +M ALK
Sbjct: 241 FVMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALK 300
Query: 300 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXX 359
++ + ++DY+NAH TST + D +E A+ V +A S+ SSTK
Sbjct: 301 RAQVNVSELDYINAHGTST-MADVIELAAVERVLGYYAPQVSM--SSTKSSIGHLLGAAG 357
Query: 360 XVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 419
EAIF VLAI +AP TLNL P + +P ++ I LSNSFGFGGTNAS
Sbjct: 358 AAEAIFCVLAIRDNIAPATLNLENPSIETKIDLVP-HKPRERKIDTVLSNSFGFGGTNAS 416
Query: 420 LLFTK 424
L+ +
Sbjct: 417 LVMRR 421
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 301 bits (770), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 243/426 (57%), Gaps = 19/426 (4%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVP--C 58
+V+PLGCG E W+RLI G G+R + +D+ G+L++KV V
Sbjct: 33 IVSPLGCGKELVWQRLIGGGSGLRRLG-DDIA-------------GELSAKVGGTVQDVA 78
Query: 59 GISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXX 118
G F+ + + K+ R + RFI A+ AADEAL +A W P + Q+ERT
Sbjct: 79 EDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGI 138
Query: 119 XXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAH 178
+A ++ + +RRLSPF IP L N+A+G +S+K+ F+GP VTACA
Sbjct: 139 GGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQ 198
Query: 179 SIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 238
+IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++ P ASRPFD RD
Sbjct: 199 AIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRD 258
Query: 239 GFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 298
GF HA RGA+ AE+ GYG + DA+H+T DG GA+ AM AL
Sbjct: 259 GFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLAL 318
Query: 299 KQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXX 358
+ + QVDYVNAHATSTP+GD E A++TVF A A SSTK
Sbjct: 319 RMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGP---AISSTKSATGHLLGAA 375
Query: 359 XXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNA 418
+EA F++LA+ GV P TLNL PDP + + A++ +P+ ALSN FGFGG NA
Sbjct: 376 GAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNA 435
Query: 419 SLLFTK 424
S+LF +
Sbjct: 436 SVLFRR 441
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 175/426 (41%), Positives = 242/426 (56%), Gaps = 19/426 (4%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVP--C 58
+V+PLGCG E W+RLI G G+R + +D+ G+L++KV V
Sbjct: 33 IVSPLGCGKELVWQRLIGGGSGLRRLG-DDIA-------------GELSAKVGGTVQDVA 78
Query: 59 GISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXX 118
G F+ + + K+ R + RFI A+ AADEAL +A W P + Q+ERT
Sbjct: 79 EDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGI 138
Query: 119 XXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAH 178
+A ++ + +RRLSPF IP L N+A+G +S+K+ F+GP VTA A
Sbjct: 139 GGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQ 198
Query: 179 SIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 238
+IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++ P ASRPFD RD
Sbjct: 199 AIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRD 258
Query: 239 GFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 298
GF HA RGA+ AE+ GYG + DA+H+T DG GA+ AM AL
Sbjct: 259 GFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLAL 318
Query: 299 KQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXX 358
+ + QVDYVNAHATSTP+GD E A++TVF A A SSTK
Sbjct: 319 RMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGP---AISSTKSATGHLLGAA 375
Query: 359 XXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNA 418
+EA F++LA+ GV P TLNL PDP + + A++ +P+ ALSN FGFGG NA
Sbjct: 376 GAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNA 435
Query: 419 SLLFTK 424
S+LF +
Sbjct: 436 SVLFRR 441
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 271 bits (692), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 235/425 (55%), Gaps = 26/425 (6%)
Query: 2 VTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGIS 61
++P+G +TTW + G GI +IT D + +H G+L +
Sbjct: 38 LSPIGNDVKTTWENALKGVNGIDKITRIDTE------PYSVHLAGELKN----------- 80
Query: 62 SGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXX 121
FN + ++ K+ R + RF YA+ AA EA+ DA+ L ++ +R GV
Sbjct: 81 ---FNIEDHIDKKEARRMDRFTQYAIVAAREAVKDAQ-LDINENTADRIGVWIGSGIGGM 136
Query: 122 XDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIG 181
A + + +K RR+SPFF+P ++ +MA+G VS+ G +GPN A VTACATG +SIG
Sbjct: 137 ETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIG 196
Query: 182 DAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFX 241
+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N + A RPF GRDGF
Sbjct: 197 EAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIETACRPFQEGRDGFV 254
Query: 242 XXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 301
A+ RGA IYAE+ GYG +GDA+HIT P +G+G AM A+ +
Sbjct: 255 MGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDA 314
Query: 302 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXV 361
G++ V Y+NAH TSTP+GD E AI+ F + A L SSTK +
Sbjct: 315 GIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAK--HLKVSSTKSMTGHLLGATGGI 372
Query: 362 EAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 421
EAIF+ L+I T++ PDP + + +P ++D+ I+ A+SNS GFGG NA L+
Sbjct: 373 EAIFSALSIKDSKVAPTIHAVTPDPECDLDIVP-NEAQDLDITYAMSNSLGFGGHNAVLV 431
Query: 422 FTKCQ 426
F K +
Sbjct: 432 FKKFE 436
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/424 (37%), Positives = 236/424 (55%), Gaps = 24/424 (5%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
M++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 12 MLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK---------- 54
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 55 ---DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGG 110
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G H+I
Sbjct: 111 LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNI 170
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
G AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF
Sbjct: 171 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGF 229
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HAKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+
Sbjct: 230 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRD 289
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ + SSTK
Sbjct: 290 AGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGA 347
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VE+I+++LA+ P T+NL PD + +F+P A + + L NSFGFGGTN SL
Sbjct: 348 VESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSL 407
Query: 421 LFTK 424
+F K
Sbjct: 408 IFKK 411
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/424 (37%), Positives = 236/424 (55%), Gaps = 24/424 (5%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
M++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 27 MLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK---------- 69
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 ---DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGG 125
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G H+I
Sbjct: 126 LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNI 185
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
G AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF
Sbjct: 186 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGF 244
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HAKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRD 304
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ + SSTK
Sbjct: 305 AGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGA 362
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VE+I+++LA+ P T+NL PD + +F+P A + + L NSFGFGGTN SL
Sbjct: 363 VESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSL 422
Query: 421 LFTK 424
+F K
Sbjct: 423 IFKK 426
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/425 (38%), Positives = 228/425 (53%), Gaps = 25/425 (5%)
Query: 2 VTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGIS 61
+TP+G + W+ L+ G GI IT FD Q FG
Sbjct: 17 ITPIGNTLQDYWQGLMEGRNGIGPIT-------RFDASDQACRFGGEVK----------- 58
Query: 62 SGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXX 121
+F+ +L+ K+ + + RF +A+CA+ +A++DAK + ++ E GV
Sbjct: 59 --DFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKLVINELNADE-IGVLIGTGIGGL 115
Query: 122 XDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIG 181
D ++ +K R SPF IP ++ NMASG ++ G +GPN+ VTACA G+++IG
Sbjct: 116 KVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIG 175
Query: 182 DAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFX 241
DA R++Q G + M+ GGTE++I LS AGF +RAL+ + N P ASRPFD RDGF
Sbjct: 176 DAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKDRDGFV 234
Query: 242 XXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQS 301
A RGAKIY E+ GY M+ DA+HIT P DG+GA A+ ALK S
Sbjct: 235 MGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDS 294
Query: 302 GLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXV 361
GL+ V Y+NAH TSTP D E AI+ +HA ++A SSTK +
Sbjct: 295 GLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAY--NIAVSSTKSMTGHLLGGSGGI 352
Query: 362 EAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 421
EA+ V+AI P T+NL PDP + +++P S+ + + ALSNSFGFGG N +L
Sbjct: 353 EAVATVMAIAEDKVPPTINLENPDPECDLDYVP-GQSRALIVDVALSNSFGFGGHNVTLA 411
Query: 422 FTKCQ 426
F K Q
Sbjct: 412 FKKYQ 416
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 267 bits (682), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 235/424 (55%), Gaps = 24/424 (5%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
M++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 27 MLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK---------- 69
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 ---DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGG 125
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TAC +G H+I
Sbjct: 126 LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNI 185
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
G AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF
Sbjct: 186 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGF 244
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HAKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRD 304
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ + SST
Sbjct: 305 AGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVLVSSTASMTGHLLGAAGA 362
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VE+I+++LA+ P T+NL PD + +F+P A + + L NSFGFGGTN SL
Sbjct: 363 VESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSL 422
Query: 421 LFTK 424
+F K
Sbjct: 423 IFKK 426
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 235/424 (55%), Gaps = 24/424 (5%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
M++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 27 MLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK---------- 69
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 ---DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGG 125
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TA +G H+I
Sbjct: 126 LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNI 185
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
G AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF
Sbjct: 186 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGF 244
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HAKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRD 304
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ + SSTK
Sbjct: 305 AGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGA 362
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VE+I+++LA+ P T+NL PD + +F+P A + + L NSFGFGGTN SL
Sbjct: 363 VESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSL 422
Query: 421 LFTK 424
+F K
Sbjct: 423 IFKK 426
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 265 bits (676), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 160/424 (37%), Positives = 235/424 (55%), Gaps = 24/424 (5%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
M++P+G E+TW+ L+ G+ GI I +FD F L
Sbjct: 27 MLSPVGNTVESTWKALLAGQSGISLID-------HFDTSAYATKFAGLVK---------- 69
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+FN + ++ K+ R + FI Y + A +A+ D+ +++ R G
Sbjct: 70 ---DFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGIGG 125
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ + R++SPFF+P ++NM +GH+++ YG +GP+ + TA +G H+I
Sbjct: 126 LGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNI 185
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
G AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N PQ ASRP+D RDGF
Sbjct: 186 GHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGF 244
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HAKKRGAKIYAE+ G+GMS DA+H+T P +G GA LAM AL+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRD 304
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ + SSTK
Sbjct: 305 AGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVLVSSTKSMTGHLLGAAGA 362
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VE+I+++LA+ P T+NL PD + +F+P A + + L NSFGFGGTN SL
Sbjct: 363 VESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSL 422
Query: 421 LFTK 424
+F K
Sbjct: 423 IFKK 426
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 232/428 (54%), Gaps = 32/428 (7%)
Query: 2 VTPLGCGAETTWRRLIVGECGIREIT---PEDLKMGNFDRETQLHAFGQLTSKVAAVVPC 58
VTP+G AET+W G G+ + T P+D + K+AA +
Sbjct: 14 VTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPV-----------------KIAAELK- 55
Query: 59 GISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXX 118
+F+ + +L K+ R RF YA+ +A+ A+ D+ L D R GV
Sbjct: 56 -----DFDVEKYLEKKEARKXDRFTHYAIASAEXAVQDS-GLVIDDSNANRVGVWIGSGI 109
Query: 119 XXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAH 178
++ + RR+SPFF+P + + SG VS+++G +G N VTACAT +
Sbjct: 110 GGXETFETQYEIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATN 169
Query: 179 SIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRD 238
SIGDA ++I+ GD+D + GG E+ I S+AGF ++AL+ N P+ A RPFD RD
Sbjct: 170 SIGDAFKVIERGDADAXITGGAEAPITKXSLAGFTANKALS--LNPDPETACRPFDKDRD 227
Query: 239 GFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRAL 298
GF HAK RGAKIYAE+ GYG +GDA+HIT P +G+GA A A+
Sbjct: 228 GFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAI 287
Query: 299 KQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXX 358
+GL +VDY+NAH TSTP D E AI+TVF +HA LA SSTK
Sbjct: 288 DDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAK--KLAISSTKSXTGHTLGAS 345
Query: 359 XXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNA 418
+EAIFA+L I + T++L D + + +++P A ++ ++ +SNSFGFGG NA
Sbjct: 346 GGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEA-REANVNVVISNSFGFGGHNA 404
Query: 419 SLLFTKCQ 426
+L+F + +
Sbjct: 405 TLVFKRIE 412
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 218 bits (554), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 148/426 (34%), Positives = 211/426 (49%), Gaps = 29/426 (6%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+ +P+G E W L G+ GI IT D +FD +H ++
Sbjct: 32 VTSPIGNTPEEFWNSLATGKIGIGGITKFD--HSDFD----VHNAAEIQ----------- 74
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+F D + KD + YAL AA EA++ A L + ++R GV
Sbjct: 75 ---DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHAN-LDVEALNRDRFGVIVASGIGG 130
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ D + EK +R+ P +P+ L NMASG+V+M++G G + TAC++ +I
Sbjct: 131 IKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAI 190
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
GDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS PFD R+GF
Sbjct: 191 GDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRASIPFDKDRNGF 248
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HA+KRGA I AEV GYG + DA+H+T PH +G+GAI A+ AL++
Sbjct: 249 VMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEE 308
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+ + QV YVNAH TSTP + E+ AI V + SSTK
Sbjct: 309 AEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE-----VPVSSTKSFTGHLLGAAGA 363
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 420
VEAI + A+ H P+T ++ N + + I A+SN+FGFGG NA L
Sbjct: 364 VEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVV-YGQGLEKEIPYAISNTFGFGGHNAVL 422
Query: 421 LFTKCQ 426
F + +
Sbjct: 423 AFKRWE 428
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 214 bits (546), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 212/427 (49%), Gaps = 31/427 (7%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+ +P+G E W L G+ GI IT D +FD +H ++
Sbjct: 33 VTSPIGNTPEEFWNSLATGKIGIGGITKFD--HSDFD----VHNAAEIQ----------- 75
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+F D + KD + YAL AA EA++ A L + ++R GV
Sbjct: 76 ---DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHAN-LDVEALNRDRFGVIVASGIGG 131
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ D + EK +R+ P +P+ L NMASG+V+M++G G + TAC++ +I
Sbjct: 132 IKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAI 191
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
GDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS PFD R+GF
Sbjct: 192 GDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRASIPFDKDRNGF 249
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HA+KRGA I AEV GYG + DA+H+T PH +G+GAI A+ AL++
Sbjct: 250 VMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEE 309
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+ + QV YVNA TSTP + E+ AI V + SSTK
Sbjct: 310 AEISPEQVAYVNAAGTSTPANEKGESGAIVAVLGKE-----VPVSSTKSFTGHLLGAAGA 364
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTA-SKDMPISAALSNSFGFGGTNAS 419
VEAI + A+ H P+T ++ N + K++P A+SN+FGFGG NA
Sbjct: 365 VEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYAQGLEKEIPY--AISNTFGFGGHNAV 422
Query: 420 LLFTKCQ 426
L F + +
Sbjct: 423 LAFKRWE 429
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 212/425 (49%), Gaps = 31/425 (7%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
+ +P+G W L G+ GI IT D +FD +H ++
Sbjct: 32 VTSPIGNTPAEFWNSLATGKIGIGGITKFD--HSDFD----VHNAAEIQ----------- 74
Query: 61 SSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXX 120
+F D + KD + YAL AA EA++ A L ++R GV
Sbjct: 75 ---DFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHAN-LDVAALNRDRFGVIVASGIGG 130
Query: 121 XXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSI 180
+ D + EK +R+ P +P+ L NMASG+V+M++G G + TAC++ +I
Sbjct: 131 IKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAI 190
Query: 181 GDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF 240
GDA R I+FG DVM+ GGTE+SI ++AGF AL+T + P AS PFD R+GF
Sbjct: 191 GDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTED--PTRASIPFDKDRNGF 248
Query: 241 XXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ 300
HA+KRGA I AEV GYG + DA+H+T PH +G+GAI A+ AL++
Sbjct: 249 VMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEE 308
Query: 301 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXX 360
+ + QV YVNAH TSTP + E+ AI V ++ SSTK
Sbjct: 309 AEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK-----AVPVSSTKSFTGHLLGAAGA 363
Query: 361 VEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTA-SKDMPISAALSNSFGFGGTNAS 419
VEAI + A+ H P+T ++ N + +K++P A+SN+FGFGG NA
Sbjct: 364 VEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLAKEIPY--AISNTFGFGGHNAV 421
Query: 420 LLFTK 424
L F +
Sbjct: 422 LAFKR 426
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 13/365 (3%)
Query: 64 EFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXD 123
+ + +S ++ + R R A+ A D+A+ DA L ++ ERTG+
Sbjct: 57 DIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAG-LTEEEVSNERTGIIMGSGGPSTRT 115
Query: 124 TVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 183
VD+A + EK +R+ PF +P+ + + AS ++ + +G N++ +ACAT H IG+A
Sbjct: 116 IVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNA 175
Query: 184 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 243
MIQ+G D M AGG E LS+ F A+++KYN TP ASR +D RDGF
Sbjct: 176 YEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIA 234
Query: 244 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 303
A RGAKIY E+ GYG + D + + P G+GAI M AL
Sbjct: 235 GGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV-- 290
Query: 304 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 363
+ ++DY+N HATSTP GD E AIR +F +A +TK EA
Sbjct: 291 -TSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIA--ATKSLTGHSLGATGVQEA 347
Query: 364 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASK--DMPISAALSNSFGFGGTNASLL 421
I+++L + + + ++ + DP F D MP+ + ++ ++ LSNSFGFGGTNA+L+
Sbjct: 348 IYSLLMMQNNFICESAHIEELDPAFAD--MPIVRKRIDNVQLNTVLSNSFGFGGTNATLV 405
Query: 422 FTKCQ 426
F + Q
Sbjct: 406 FQRYQ 410
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 13/365 (3%)
Query: 64 EFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXD 123
+ + +S ++ + R R A+ A D+A+ DA L ++ ERTG+
Sbjct: 74 DIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAG-LTEEEVSNERTGIIMGSGGPSTRT 132
Query: 124 TVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDA 183
VD+A + EK +R+ PF +P+ + + AS ++ + +G N++ +ACAT H IG+A
Sbjct: 133 IVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNA 192
Query: 184 ARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXX 243
MIQ+G D M AGG E LS+ F A+++KYN TP ASR +D RDGF
Sbjct: 193 YEMIQYGKQDRMFAGGCEDLDWTLSVL-FDAMGAMSSKYNDTPSTASRAYDKNRDGFVIA 251
Query: 244 XXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 303
A RGAKIY E+ GYG + D + + P G+GAI M AL
Sbjct: 252 GGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALSTV-- 307
Query: 304 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEA 363
+ ++DY+N HATSTP GD E AIR +F +A +TK EA
Sbjct: 308 -TSKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIA--ATKSLTGHSLGATGVQEA 364
Query: 364 IFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASK--DMPISAALSNSFGFGGTNASLL 421
I+++L + + + ++ + DP F D MP+ + ++ ++ LSNSFGFGGTNA+L+
Sbjct: 365 IYSLLMMQNNFICESAHIEELDPAFAD--MPIVRKRIDNVQLNTVLSNSFGFGGTNATLV 422
Query: 422 FTKCQ 426
F + Q
Sbjct: 423 FQRYQ 427
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 195/415 (46%), Gaps = 29/415 (6%)
Query: 10 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 69
E+TW+ L+ GE GI + ED + +D ++ G L V DS
Sbjct: 30 ESTWKGLLAGESGIHAL--EDEFVTKWDLAVKIG--GHLKDPV---------------DS 70
Query: 70 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQ 129
+ D R ++ + A S + +R V V++
Sbjct: 71 HMGRLDMRRMSYVQRMGKLLGGQLWESAG---SPEVDPDRFAVVVGTGLGGAERIVESYD 127
Query: 130 MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQF 189
++ R++SP + I+ N A+ + ++ G + V+AC++G+ +I A R I
Sbjct: 128 LMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVM 187
Query: 190 GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXX 249
GD+DV V GG E I+AL +A F RA++T+ N P+ ASRPFD RDGF
Sbjct: 188 GDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGALM 246
Query: 250 XXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 309
HAK RGAK A + G G++ DA H+ P DG A AMTR+L+ +GL +D
Sbjct: 247 LIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADID 306
Query: 310 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLA 369
+VNAH T+TP+GD EA AIR D A A + K +E++ VL
Sbjct: 307 HVNAHGTATPIGDAAEANAIRVAGCDQA-----AVYAPKSALGHSIGAVGALESVLTVLT 361
Query: 370 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 424
+ GV P TLN PDP + + + + A++NSFGFGG N +L F +
Sbjct: 362 LRDGVIPPTLNYETPDPEIDLDVV-AGEPRYGDYRYAVNNSFGFGGHNVALAFGR 415
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 194/415 (46%), Gaps = 29/415 (6%)
Query: 10 ETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGISSGEFNEDS 69
E+TW+ L+ GE GI + ED + +D ++ G L V DS
Sbjct: 30 ESTWKGLLAGESGIHAL--EDEFVTKWDLAVKIG--GHLKDPV---------------DS 70
Query: 70 WLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQ 129
+ D R ++ + A S + +R V V++
Sbjct: 71 HMGRLDMRRMSYVQRMGKLLGGQLWESAG---SPEVDPDRFAVVVGTGLGGAERIVESYD 127
Query: 130 MICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQF 189
++ R++SP + I+ N A+ + ++ G + V+A ++G+ +I A R I
Sbjct: 128 LMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVM 187
Query: 190 GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXX 249
GD+DV V GG E I+AL +A F RA++T+ N P+ ASRPFD RDGF
Sbjct: 188 GDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFGEAGALM 246
Query: 250 XXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVD 309
HAK RGAK A + G G++ DA H+ P DG A AMTR+L+ +GL +D
Sbjct: 247 LIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADID 306
Query: 310 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLA 369
+VNAH T+TP+GD EA AIR D A A + K +E++ VL
Sbjct: 307 HVNAHGTATPIGDAAEANAIRVAGCDQA-----AVYAPKSALGHSIGAVGALESVLTVLT 361
Query: 370 IHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 424
+ GV P TLN PDP + + + + A++NSFGFGG N +L F +
Sbjct: 362 LRDGVIPPTLNYETPDPEIDLDVV-AGEPRYGDYRYAVNNSFGFGGHNVALAFGR 415
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 178/355 (50%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 62 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 121
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A IQ G
Sbjct: 122 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 181
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 182 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 240
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 241 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 295
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 296 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 352 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 178/355 (50%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 62 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 121
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A IQ G
Sbjct: 122 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 181
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 182 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 240
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 241 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 295
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 296 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 352 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 178/355 (50%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 62 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 121
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A IQ G
Sbjct: 122 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 181
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 182 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 240
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 241 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 295
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+T+ EAI+++L +
Sbjct: 296 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATRAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 352 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 177/355 (49%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 74 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 133
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A IQ G
Sbjct: 134 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 193
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 194 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 252
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 253 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 307
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+T EAI+++L +
Sbjct: 308 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATAAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 364 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 177/355 (49%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 74 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 133
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A IQ G
Sbjct: 134 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 193
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 194 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 252
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 253 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 307
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+ TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 308 NSQGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 364 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 177/355 (49%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 74 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 133
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +ACAT AH IG+A IQ G
Sbjct: 134 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGK 193
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 194 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 252
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 253 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 307
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+ TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 308 NSEGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 364 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 177/355 (49%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 62 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 121
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +A AT AH IG+A IQ G
Sbjct: 122 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQLGK 181
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 182 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 240
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 241 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 295
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 296 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 352 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 177/355 (49%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 74 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 133
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +A AT AH IG+A IQ G
Sbjct: 134 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQIQLGK 193
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 194 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 252
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 253 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 307
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 308 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 363
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 364 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 417
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 177/355 (49%), Gaps = 16/355 (4%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF++ YA + ++A+ DA P R G+ V A +
Sbjct: 62 RKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMR 121
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + + S ++ + G N++ +A AT AH IG+A IQ G
Sbjct: 122 GPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQIQLGK 181
Query: 192 SDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXX 251
D++ AGG E ++ F AL+TKYN TP++ASR +D RDGF
Sbjct: 182 QDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVV 240
Query: 252 XXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
HA RGA IYAE+ GYG + D + P G+GA+ M A+ G+ + +DY+
Sbjct: 241 EELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMH--GVDT-PIDYL 295
Query: 312 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIH 371
N+H TSTP+GD E AIR VF D S A S+TK EAI+++L +
Sbjct: 296 NSHGTSTPVGDVKELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 372 HGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
HG ++N+ + D +T + D ++ +SNSFGFGGTNA+L+ K +
Sbjct: 352 HGFIAPSINIEELDE-QAAGLNIVTETTDRELTTVMSNSFGFGGTNATLVMRKLK 405
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 190/427 (44%), Gaps = 33/427 (7%)
Query: 1 MVTPLGCGAETTWRRLIVGECGIREITPEDLKMGNFDRETQLHAFGQLTSKVAAVVPCGI 60
M T L AETTW+ L+ + GIR T +D + FD +P I
Sbjct: 37 MTTALATDAETTWKLLLDRQSGIR--TLDDPFVEEFD------------------LPVRI 76
Query: 61 SSGEFNE-DSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQGQKERTGVXXXXXXX 119
E D L + R + + + +A S + R V
Sbjct: 77 GGHLLEEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAG---SPEVDTNRLMVSIGTGLG 133
Query: 120 XXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHS 179
+ V + + + ++ +SP + + + N A+ V ++ + V+ACA+GA +
Sbjct: 134 SAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEA 193
Query: 180 IGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDG 239
I A + I G++D + GG E+ I+A+ +AGF + R + + N P A RPFD RDG
Sbjct: 194 IARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDG 253
Query: 240 FXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALK 299
F HAK RGA I A + G ++ D H+ P +G+ A A+TRA++
Sbjct: 254 FVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQ 313
Query: 300 QSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXX 359
+GL +D+VNAHAT T +GD E AI + A + K
Sbjct: 314 LAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRP----AVYAPKSALGHSVGAVG 369
Query: 360 XVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP--ISAALSNSFGFGGTN 417
VE+I VLA+ V P TLNL DP + + + A + P A++NSFGFGG N
Sbjct: 370 AVESILTVLALRDQVIPPTLNLVNLDPEID---LDVVAGEPRPGNYRYAINNSFGFGGHN 426
Query: 418 ASLLFTK 424
++ F +
Sbjct: 427 VAIAFGR 433
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 174/358 (48%), Gaps = 23/358 (6%)
Query: 77 RSIARFIA----YALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMIC 132
R + RF + YA A EA+ D+ L Q R+G+ + V +
Sbjct: 67 RKVLRFXSDASIYAYLAXQEAIADSG-LSDSQVSNFRSGLVVGSGGGSPRNQVAGSDAXR 125
Query: 133 EKR-LRRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGD 191
R L+ + P+ + + + S ++ + +G N++ +ACAT AH IG A +IQ G
Sbjct: 126 TPRGLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQLGK 185
Query: 192 SDVMVAGGTESSIDALSMAGFCK---SRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXX 248
D++ AGG E L C+ AL+TKYN TP +ASR +D RDGF
Sbjct: 186 QDIVFAGGGEE----LCWEXACEFDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGX 241
Query: 249 XXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQV 308
HA RGA IYAE+ GYG + D P G+GA+ A +G+ + +
Sbjct: 242 VVVEELEHALARGAHIYAEIVGYGATSDGADXVAP--SGEGAVRCXQXA--XAGVDT-PI 296
Query: 309 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVL 368
DY N H TSTP+GD E AIR VF ++ + A SSTK EAIF++L
Sbjct: 297 DYXNVHGTSTPVGDVKELGAIREVFGNN----TPAISSTKAXTGHSLGAAGVHEAIFSLL 352
Query: 369 AIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
+ HG ++N+ D + +T + ++ SNSFGFGGTNA+L+ K Q
Sbjct: 353 XVEHGFIAPSINIDNLDEQAQGXNI-ITETTQRELTTVXSNSFGFGGTNATLVXRKYQ 409
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 140/290 (48%), Gaps = 8/290 (2%)
Query: 137 RRLSPFFIPRILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMV 196
R + + +P ++ V+ G +GP T C +G S+G+A R I+ G +DVM
Sbjct: 137 RHMFDYLVPSVM----PAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMF 192
Query: 197 AGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXH 256
AG ++ I + +A F RA TT N P+ ASRPFD RDGF
Sbjct: 193 AGAADTPITPIVVACFDAIRA-TTARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDS 251
Query: 257 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHAT 316
A RGA+I+AE+ GY +A+H+T DG+ + AL +S + +DY+NAH +
Sbjct: 252 ALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGS 311
Query: 317 STPLGDTVEATAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP 376
T D E A + +HA + SS K +E VLA+ HGV P
Sbjct: 312 GTRQNDRHETAAYKRALGEHARRTPV--SSIKSMVGHSLGAIGSLEIAACVLALEHGVVP 369
Query: 377 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 426
T NL DP + +++PL A ++ + + L+ GFGG ++++ +
Sbjct: 370 PTANLRTSDPECDLDYVPLEA-RERKLRSVLTVGSGFGGFQSAMVLRDAE 418
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 168/382 (43%), Gaps = 15/382 (3%)
Query: 45 FGQLTSKVAAVVPCGISSGEFNEDSWLNSKDHRSIARFIAYALCAADEALHDAKWLPSDQ 104
F L +++AA +P F + + K RS+ R YA+ A++ AL DA + +
Sbjct: 46 FESLHTRLAAPLPG------FAQPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDES 99
Query: 105 GQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFIPRILINMASGHVSMKYGFQG 164
R GV M+ + ++ +++ + + +VS+ + +G
Sbjct: 100 ISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKG 159
Query: 165 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNG 224
+ACA+G+ +IG A I G +M+AGG E + ++A F A +T+ N
Sbjct: 160 RIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-ND 217
Query: 225 TPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMSGDAHHITQPH 284
P RPFD RDG HAK RGA I+AE+ G+G + D H+TQP
Sbjct: 218 EPHLTPRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP- 276
Query: 285 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 344
AM AL+ + L ++ + YVNAH TST GD E+ A F + +
Sbjct: 277 -TASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGER-----MPI 330
Query: 345 SSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 404
SS K +EA + + + TLNL + DP ++ +
Sbjct: 331 SSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEARAIDAE 390
Query: 405 AALSNSFGFGGTNASLLFTKCQ 426
+SN+F FGG N SL+F + +
Sbjct: 391 YVMSNNFAFGGINTSLIFRRVR 412
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 116/283 (40%), Gaps = 14/283 (4%)
Query: 151 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 210
+ASG +S G +GP+ + TAC++ ++ A ++ G+S + V GG
Sbjct: 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFV 214
Query: 211 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 270
F + RAL S+ F G DGF A++ G ++ A VRG
Sbjct: 215 DFSRQRALAADGR------SKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRG 268
Query: 271 YGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIR 330
++ D G + +AL+ GL+ VD V AH T T LGD +EA A+
Sbjct: 269 SALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALL 328
Query: 331 TVFS-DHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDP--I 387
+ D L S K + VLA+ +G P TL++ +P P
Sbjct: 329 DTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVD 388
Query: 388 FNDNFMPLTAS-----KDMPISAALSNSFGFGGTNASLLFTKC 425
++ + L A + A ++FG GTNA ++ +
Sbjct: 389 WSSGGVALLAGNQPWRRGERTRRAAVSAFGISGTNAHVIVEEA 431
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 20/284 (7%)
Query: 150 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM 209
++ASG V+ G +GP TAC++G ++ A ++ + + +AGG +
Sbjct: 176 SVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSPGAF 235
Query: 210 AGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVR 269
F L +PF DGF A++ G + A +R
Sbjct: 236 TEFRSQGGLAADGR------CKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 270 GYGMSGD--AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 327
G ++ D ++ +T P G + RAL+ +G+++ VDYV AH T T LGD +E
Sbjct: 290 GSAVNQDGASNGLTAPS--GPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVH 347
Query: 328 AIRTVF-SDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDP 386
A+ + + ++ L S K AVLA+ HG P TL+ +P P
Sbjct: 348 ALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSP 407
Query: 387 IFNDNFMPLTA--------SKDMPISAALSNSFGFGGTNASLLF 422
+ ++ + + P A +S SFG GTNA ++
Sbjct: 408 QIEWDLGAVSVVSQARSWPAGERPRRAGVS-SFGISGTNAHVIV 450
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 22/280 (7%)
Query: 151 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 210
M + +S + F+GP+ A TAC++ ++ +A + I G + GG + +
Sbjct: 141 MMANRLSFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSV 200
Query: 211 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 270
F + L +P+ + FD +G+ A+ ++YA +
Sbjct: 201 QFLRLGML------SPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILN 250
Query: 271 YGMSGDAHH---ITQPHIDGKGAILAMTRALKQS-GLQSHQVDYVNAHATSTPLGDTVEA 326
G + D +T P D + ++ R+L QS G+ +Y+ AH T T +GD E
Sbjct: 251 AGTNTDGFKEQGVTFPSGDIQEQLI---RSLYQSAGVAPESFEYIEAHGTGTKVGDPQEL 307
Query: 327 TAIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPDP 386
I L STK +L++ HG+ L+ P+P
Sbjct: 308 NGITRALC-ATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNP 366
Query: 387 IFNDNFMPLTASKDMPISA----ALSNSFGFGGTNASLLF 422
D P+ NSFGFGG+N ++
Sbjct: 367 EIPALLDGRLQVVDQPLPVRGGNVGINSFGFGGSNVHIIL 406
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 151 MASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA 210
M + +S + F+GP+ TAC++ ++ A + I+ G+ V GG + S
Sbjct: 139 MMANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSL 198
Query: 211 GFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRG 270
F K L+ +GT R FD G+ A+ ++YA +
Sbjct: 199 QFMKLGMLSQ--DGT----CRSFDAEGTGYCRAEAVVAVLLTKKSLAR----RVYATILN 248
Query: 271 YGMSGDAHH---ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 327
G + D +T P D + ++ A +G ++Y+ AH T T +GD E
Sbjct: 249 AGTNTDGSKEQGVTFPSGDVQEQLIRSLYA--PAGPDPESLEYIEAHGTGTKVGDPQELN 306
Query: 328 AIRTVFSDHATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAPLTLNLAKPD-- 385
I L STK I +L++ HGV L+ P+
Sbjct: 307 GIVNALC-ATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPE 365
Query: 386 -PIFNDNFMPLTASKDMPISAALS--NSFGFGGTNASLLF 422
P D + + + +PI NSFGFGG+N ++
Sbjct: 366 IPALQDGRLQVV-DRPLPIRGGNVGINSFGFGGSNVHVIL 404
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 10/250 (4%)
Query: 86 ALCAADEALHDAKWLPSDQGQKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPFFIP 145
AL AAD AL DAK P + GV T + + + + +S +
Sbjct: 83 ALTAADWALQDAKADPESLTDYD-MGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESF 141
Query: 146 RILINMASGHVSMKYGFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 205
+ +G +S+++G +GP+ A V A G ++G A R I+ G + ++V+GG +S++D
Sbjct: 142 AWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALD 200
Query: 206 ALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA-KI 264
S ++T + P A PFD G+ A+ RG
Sbjct: 201 PWGWVSQIASGRISTATD--PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDA 258
Query: 265 YAEVRGYGMSGD-AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 323
Y E+ G + D A +P G A+ AL +G VD V A P D
Sbjct: 259 YGELAGCASTFDPAPGSGRP----AGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDA 314
Query: 324 VEATAIRTVF 333
EA AI VF
Sbjct: 315 AEARAIGRVF 324
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 145/394 (36%), Gaps = 35/394 (8%)
Query: 47 QLTSKVAAVVPCGISSGEFNEDSWLNSKDH-RSIARFIAYALCAADEALHDAKWLPSDQG 105
+L+ V A +P G F+ W S D SI R + + A +A + + P++
Sbjct: 2616 KLSRTVGAQIPTG-----FDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTPTELM 2670
Query: 106 QKERTGVXXXXXXXXXXDTVDAAQMICEKRLRRLSPF-FIPRILINMASGHVSMKY-GFQ 163
+ M L R P + +L N+ + HV Y G
Sbjct: 2671 RWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVGGY 2730
Query: 164 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 218
G V ACAT A S+ + I+ G +D+++AGG E+ I MA + +
Sbjct: 2731 GAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMM 2790
Query: 219 TTKYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGAKIYAEVRGYGMS-GDA 277
K + + SR D R GF A K G + A V GY S D
Sbjct: 2791 RAK-GISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLA-VVGYAQSFADG 2848
Query: 278 HHITQPHIDGKGAILA--------MTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAI 329
H + P G GA+ A + R+L Q G+ + + ++ H TST D E T +
Sbjct: 2849 VHTSIPA-PGLGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNE-TEL 2906
Query: 330 RTVFSD---HATSGSLAFSSTKXXXXXXXXXXXXVEAIFAVLAIHHGVAP--LTLNLAKP 384
+D A L S K + + + GV P +L+
Sbjct: 2907 HERIADSMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDD 2966
Query: 385 DPIFNDNFM----PLTASKDMPISAALSNSFGFG 414
+ + +F+ PL P+ A L S GFG
Sbjct: 2967 ELATSGHFVWVREPLDLRGKFPLKAGLVTSLGFG 3000
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 148 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 206
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1080 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1139
Query: 207 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 262
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1140 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1199
Query: 263 KIYAEV 268
IY V
Sbjct: 1200 PIYGIV 1205
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 148 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 206
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1279 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 207 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 262
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 263 KIYAEV 268
IY V
Sbjct: 1399 PIYGIV 1404
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 148 LINMASGHVSMKY-GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 206
IN S V+M GP V ACAT S+ I G + + + GG + +
Sbjct: 1279 FINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1338
Query: 207 LSMA-GFCKSRALTT---KYNGTPQEASRPFDCGRDGFXXXXXXXXXXXXXXXHAKKRGA 262
S G K+ + T ++ TP E SRP R+GF A K G
Sbjct: 1339 GSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGV 1398
Query: 263 KIYAEV 268
IY V
Sbjct: 1399 PIYGIV 1404
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 165 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 202
P++ C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 256 HAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 314
A + G + A+++ Y +G +P + G G I A +ALK++GL + +D + A+
Sbjct: 267 KADELGIRPLAKIKSYASAG-----VEPEVMGTGPIPATRKALKKAGLSINDIDLIEAN 320
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTES 202
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 228
CA+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|1P6G|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P87|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AVY|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AW7|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 30s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2P|K Chain K, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2U|K Chain K, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QOU|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The First 70s Ribosome,
With Spectinomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|2QOW|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 30s Subunit Of The Second 70s
Ribosome, With Spectinomycin Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2QOY|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
First 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QP0|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome, With Spectinomycin And Neomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QAL|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAN|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QB9|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBB|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBD|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
First 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBF|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 30s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBH|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The First 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBJ|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 30s
Subunit Of The Second 70s Ribosome, With Gentamicin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4K|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The First 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4M|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
30s Subunit Of The Second 70s Ribosome, With Paromomycin
Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2VHO|K Chain K, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 3 Of 4)
pdb|2VHP|K Chain K, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 4 Of 4)
pdb|3DF1|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The First 70s Ribosome, With
Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3DF3|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 30s Subunit Of The Second 70s Ribosome,
With Hygromycin B Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3J00|K Chain K, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|4ADV|K Chain K, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
pdb|3J0U|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0V|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0X|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J0Z|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J10|N Chain N, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J13|M Chain M, Structural Characterization Of Mrna-Trna Translocation
Intermediates (30s Ribosome Of Class 3 Of The Six
Classes)
Length = 128
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 161 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 212
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 50 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 104
>pdb|1VS5|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS7|K Chain K, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1A|C Chain C, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Pre- Accommodation State
pdb|3E1C|C Chain C, Structure Of The 30s Subunit And The Trnas Of E. Coli
Ribosome In Post-Accommodation State
pdb|3I1M|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1O|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Q|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1S|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1Z|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I21|K Chain K, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KC4|K Chain K, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
In Pdb Entry 3kcr
pdb|3OR9|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The First
70s Ribosome.
pdb|3ORA|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3IZV|O Chain O, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|O Chain O, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
pdb|3SFS|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOQ|K Chain K, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAQ|K Chain K, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAS|K Chain K, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 129
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 161 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 212
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 51 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 105
>pdb|3FIH|K Chain K, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IY8|K Chain K, Leishmania Tarentolae Mitonchondrial Ribosome Small
Subunit
pdb|2WWL|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 30s, The P-Site
Trna And The Tnac Leader Peptide (Part 1 Of 2).
pdb|3OFO|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFP|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|3OFA|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The First 70s Ribosome.
pdb|3OFB|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 30s Subunit Of
The Second 70s Ribosome.
pdb|3OFX|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OFY|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome
pdb|3OAQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
First 70s Ribosome.
pdb|3OAR|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 30s Subunit Of The
Second 70s Ribosome.
pdb|2YKR|K Chain K, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
pdb|4A2I|K Chain K, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
pdb|3J18|K Chain K, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
pdb|4GD1|K Chain K, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|4GD2|K Chain K, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
Length = 117
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 161 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 212
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 93
>pdb|2GY9|K Chain K, Structure Of The 30s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYB|K Chain K, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 116
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 161 GFQGPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAG---GTESSIDALSMAGF 212
GF+G + A A DA + + +VMV G G ES+I AL+ AGF
Sbjct: 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGF 93
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 164 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 218
GP V ACAT S+ I G + V + GG E S + +M ++
Sbjct: 1271 GPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEE 1330
Query: 219 TTKYNGTPQEASRPFDCGRDGF 240
+ P E SRP R+GF
Sbjct: 1331 FAR-GREPGEMSRPTSTTRNGF 1351
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 174 ATGAHSIGDAARMIQFGDSDVMVAGGTES 202
++G +I AA IQ G S+V+VAGG E+
Sbjct: 92 SSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 257 AKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 311
AK G + A +R ++G P I G G + A +ALK++GL +D++
Sbjct: 259 AKDLGLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFI 308
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 135 RLRRLSPFFIPRILINMASGHVSMKYGFQGPNHA--AVTA---------------CATGA 177
LRR P ++ +M G VS G QG + A AV A CA+G
Sbjct: 42 ELRRRYPDLDETLISDMILGVVS-PVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGL 100
Query: 178 HSIGDAARMIQFGDSDVMVAGGTES 202
++ AA+ ++ G D+++AGG ES
Sbjct: 101 EAVNTAAQKVRSGWDDLVLAGGVES 125
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 125
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFC 213
C +G ++ + I GD+ ++VAGG ES +SMA C
Sbjct: 86 CGSGLRAVALGMQQIATGDASIIVAGGMES----MSMAPHC 122
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 173 CATGAHSIGDAARMIQFGDSDVMVAGGTE 201
C + ++ DAAR I GD+ V + GG E
Sbjct: 91 CGSSXQALHDAARXIXTGDAQVCLVGGVE 119
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 174 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 228
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 95 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 144
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 174 ATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQE 228
A+G +I A++ + G DVMVAGG ES +S + +R +T Y G E
Sbjct: 106 ASGMKAIMMASQSLMCGHQDVMVAGGMES----MSNVPYVMNRG-STPYGGVKLE 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,623,635
Number of Sequences: 62578
Number of extensions: 417618
Number of successful extensions: 1032
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 83
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)