Query 014350
Match_columns 426
No_of_seqs 225 out of 999
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464 COP9 signalosome, subu 100.0 1.3E-73 2.8E-78 519.9 31.8 388 12-401 23-410 (440)
2 KOG1463 26S proteasome regulat 100.0 1.7E-60 3.6E-65 444.8 30.3 372 21-404 8-394 (411)
3 COG5159 RPN6 26S proteasome re 100.0 8E-53 1.7E-57 385.6 28.0 370 23-403 9-391 (421)
4 KOG1498 26S proteasome regulat 100.0 1.3E-47 2.8E-52 364.7 27.5 366 20-404 16-402 (439)
5 COG5071 RPN5 26S proteasome re 100.0 2.1E-38 4.4E-43 292.2 26.3 375 20-410 16-408 (439)
6 KOG0687 26S proteasome regulat 100.0 2.3E-28 5E-33 228.2 25.4 267 137-414 105-379 (393)
7 COG5187 RPN7 26S proteasome re 99.9 2.9E-25 6.3E-30 204.6 28.5 270 137-415 116-394 (412)
8 KOG0686 COP9 signalosome, subu 99.9 3E-25 6.4E-30 213.0 17.6 254 137-401 151-411 (466)
9 KOG1497 COP9 signalosome, subu 99.9 9.8E-21 2.1E-25 176.7 26.2 280 111-404 76-366 (399)
10 KOG2758 Translation initiation 99.9 5.4E-20 1.2E-24 171.8 22.7 272 137-422 130-418 (432)
11 KOG2908 26S proteasome regulat 99.9 8.7E-19 1.9E-23 165.3 29.4 261 145-417 84-359 (380)
12 PF01399 PCI: PCI domain; Int 99.8 1.3E-18 2.8E-23 142.6 12.1 105 296-400 1-105 (105)
13 KOG2581 26S proteasome regulat 99.8 7.7E-17 1.7E-21 155.2 25.3 247 137-400 170-423 (493)
14 KOG2582 COP9 signalosome, subu 99.5 1.8E-12 3.9E-17 123.8 20.8 217 180-401 138-361 (422)
15 smart00088 PINT motif in prote 99.4 3E-13 6.5E-18 107.4 8.1 71 333-403 2-72 (88)
16 smart00753 PAM PCI/PINT associ 99.4 3E-13 6.5E-18 107.4 8.1 71 333-403 2-72 (88)
17 PF10602 RPN7: 26S proteasome 99.3 2.4E-11 5.1E-16 109.1 13.9 129 138-275 38-169 (177)
18 COG5600 Transcription-associat 98.9 8.6E-07 1.9E-11 85.8 23.0 249 149-403 143-406 (413)
19 KOG1076 Translation initiation 98.8 3.2E-06 6.9E-11 87.4 26.9 208 194-403 498-766 (843)
20 KOG2753 Uncharacterized conser 98.8 1.7E-06 3.6E-11 82.4 21.7 159 239-401 182-340 (378)
21 PF14938 SNAP: Soluble NSF att 98.8 2.5E-06 5.5E-11 82.5 23.2 237 51-331 32-271 (282)
22 KOG2688 Transcription-associat 98.7 9.2E-07 2E-11 87.3 17.2 242 153-403 133-387 (394)
23 PF14938 SNAP: Soluble NSF att 98.5 6.2E-05 1.3E-09 72.8 23.0 196 14-217 31-231 (282)
24 PRK11788 tetratricopeptide rep 98.4 0.00039 8.4E-09 69.8 29.2 196 28-250 47-242 (389)
25 KOG1840 Kinesin light chain [C 98.4 4.2E-05 9.1E-10 79.1 19.8 213 29-249 254-477 (508)
26 PRK11788 tetratricopeptide rep 98.3 0.00014 3E-09 73.1 23.4 55 28-82 81-135 (389)
27 COG2956 Predicted N-acetylgluc 98.2 0.00036 7.7E-09 66.9 21.6 202 21-250 39-242 (389)
28 TIGR02521 type_IV_pilW type IV 98.1 0.0013 2.9E-08 59.6 22.6 184 28-245 43-226 (234)
29 KOG2072 Translation initiation 98.1 0.027 5.8E-07 60.1 33.5 219 181-400 231-493 (988)
30 TIGR00990 3a0801s09 mitochondr 98.0 0.00073 1.6E-08 72.6 21.6 189 30-251 308-496 (615)
31 TIGR00990 3a0801s09 mitochondr 98.0 0.0011 2.4E-08 71.2 23.0 191 29-250 344-536 (615)
32 KOG1840 Kinesin light chain [C 98.0 0.0012 2.5E-08 68.5 21.7 196 53-254 198-399 (508)
33 PRK10866 outer membrane biogen 98.0 0.00092 2E-08 63.2 19.1 180 16-206 31-236 (243)
34 TIGR03302 OM_YfiO outer membra 98.0 0.0012 2.5E-08 61.7 19.4 171 19-208 35-229 (235)
35 TIGR02917 PEP_TPR_lipo putativ 97.9 0.0015 3.2E-08 71.9 21.0 61 20-84 25-86 (899)
36 PRK10747 putative protoheme IX 97.8 0.0026 5.6E-08 64.7 20.6 189 28-251 165-357 (398)
37 PF13525 YfiO: Outer membrane 97.8 0.0032 6.8E-08 57.8 19.3 172 18-201 6-197 (203)
38 PF12569 NARP1: NMDA receptor- 97.8 0.047 1E-06 57.2 29.6 220 15-248 3-254 (517)
39 KOG2003 TPR repeat-containing 97.7 0.0039 8.5E-08 62.3 19.4 201 27-268 501-701 (840)
40 PF09976 TPR_21: Tetratricopep 97.7 0.0014 3E-08 56.7 14.9 122 28-208 23-144 (145)
41 PF09976 TPR_21: Tetratricopep 97.7 0.0021 4.5E-08 55.6 15.9 94 139-248 51-144 (145)
42 TIGR02917 PEP_TPR_lipo putativ 97.7 0.014 3E-07 64.2 25.9 51 29-83 478-528 (899)
43 COG2956 Predicted N-acetylgluc 97.7 0.0041 8.8E-08 59.9 17.4 71 131-212 209-279 (389)
44 TIGR00540 hemY_coli hemY prote 97.6 0.007 1.5E-07 61.7 20.0 190 29-247 166-360 (409)
45 PRK11447 cellulose synthase su 97.6 0.0083 1.8E-07 69.3 22.2 198 28-251 473-700 (1157)
46 TIGR02521 type_IV_pilW type IV 97.6 0.018 3.9E-07 52.1 20.2 173 49-251 26-198 (234)
47 PRK11447 cellulose synthase su 97.5 0.014 3.1E-07 67.4 23.0 199 28-250 281-523 (1157)
48 PF10255 Paf67: RNA polymerase 97.5 0.003 6.5E-08 63.5 14.6 181 187-377 127-343 (404)
49 KOG4626 O-linked N-acetylgluco 97.5 0.016 3.6E-07 60.1 19.9 186 29-250 299-484 (966)
50 KOG2003 TPR repeat-containing 97.5 0.056 1.2E-06 54.3 22.7 191 27-253 430-623 (840)
51 PF10075 PCI_Csn8: COP9 signal 97.4 0.00024 5.1E-09 61.5 5.6 84 292-379 38-121 (143)
52 PRK10049 pgaA outer membrane p 97.3 0.027 5.9E-07 62.2 21.3 198 28-253 249-458 (765)
53 PF13525 YfiO: Outer membrane 97.1 0.11 2.4E-06 47.5 19.9 168 51-272 2-189 (203)
54 PRK15174 Vi polysaccharide exp 97.1 0.12 2.6E-06 56.1 23.2 98 137-252 285-382 (656)
55 PF13429 TPR_15: Tetratricopep 97.1 0.018 3.9E-07 55.3 15.2 199 24-250 15-242 (280)
56 KOG2002 TPR-containing nuclear 97.1 0.091 2E-06 57.3 21.4 198 32-252 146-372 (1018)
57 TIGR03302 OM_YfiO outer membra 97.1 0.15 3.3E-06 47.3 21.0 190 50-250 29-231 (235)
58 PRK15174 Vi polysaccharide exp 97.1 0.12 2.5E-06 56.2 22.8 95 138-250 248-346 (656)
59 PF12895 Apc3: Anaphase-promot 97.1 0.0037 8E-08 48.5 8.1 82 29-161 2-83 (84)
60 PRK12370 invasion protein regu 97.0 0.035 7.5E-07 59.0 17.6 150 30-248 318-467 (553)
61 PF04190 DUF410: Protein of un 97.0 0.18 4E-06 48.1 20.8 216 60-337 16-234 (260)
62 PF12569 NARP1: NMDA receptor- 97.0 0.28 6.1E-06 51.5 23.7 213 28-254 50-337 (517)
63 COG4105 ComL DNA uptake lipopr 97.0 0.15 3.2E-06 48.0 19.2 178 15-204 32-226 (254)
64 PRK11189 lipoprotein NlpI; Pro 96.9 0.41 8.9E-06 46.5 22.9 193 31-250 41-264 (296)
65 PLN03218 maturation of RBCL 1; 96.9 0.84 1.8E-05 52.2 27.8 195 28-248 484-710 (1060)
66 PRK10803 tol-pal system protei 96.8 0.015 3.2E-07 55.7 11.7 106 17-168 142-249 (263)
67 cd05804 StaR_like StaR_like; a 96.8 0.23 5.1E-06 49.0 20.8 78 187-264 269-350 (355)
68 KOG1126 DNA-binding cell divis 96.8 0.092 2E-06 55.0 17.8 197 29-248 332-583 (638)
69 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.033 7E-07 45.3 12.2 104 138-253 4-107 (119)
70 PRK09782 bacteriophage N4 rece 96.7 0.23 5E-06 56.2 22.1 97 137-251 610-706 (987)
71 PLN03081 pentatricopeptide (PP 96.7 0.12 2.5E-06 56.6 19.2 146 29-208 272-417 (697)
72 PLN03218 maturation of RBCL 1; 96.7 0.24 5.2E-06 56.5 21.6 97 138-250 686-782 (1060)
73 KOG4626 O-linked N-acetylgluco 96.6 0.17 3.7E-06 52.9 18.3 52 29-84 231-282 (966)
74 PRK02603 photosystem I assembl 96.5 0.096 2.1E-06 46.5 14.2 108 138-254 37-145 (172)
75 PRK10370 formate-dependent nit 96.5 0.37 8E-06 44.0 18.1 116 139-274 76-194 (198)
76 PF14559 TPR_19: Tetratricopep 96.5 0.0064 1.4E-07 44.8 5.2 53 28-84 3-55 (68)
77 PRK04841 transcriptional regul 96.5 0.87 1.9E-05 51.2 24.6 215 28-250 421-640 (903)
78 KOG1585 Protein required for f 96.4 0.37 7.9E-06 45.1 17.2 171 31-210 46-218 (308)
79 cd05804 StaR_like StaR_like; a 96.4 0.5 1.1E-05 46.6 19.9 193 30-249 20-213 (355)
80 PRK10866 outer membrane biogen 96.4 0.59 1.3E-05 44.2 19.3 169 52-272 30-223 (243)
81 PF13432 TPR_16: Tetratricopep 96.4 0.013 2.9E-07 42.8 6.5 52 29-84 10-61 (65)
82 PF09756 DDRGK: DDRGK domain; 96.4 0.0051 1.1E-07 55.4 4.9 78 345-424 103-182 (188)
83 COG3071 HemY Uncharacterized e 96.4 0.53 1.1E-05 46.8 19.1 186 29-250 166-356 (400)
84 PF03399 SAC3_GANP: SAC3/GANP/ 96.4 0.025 5.4E-07 51.7 9.6 105 257-367 95-204 (204)
85 PRK12370 invasion protein regu 96.3 0.31 6.7E-06 51.8 19.1 118 28-208 350-467 (553)
86 PF13429 TPR_15: Tetratricopep 96.3 0.096 2.1E-06 50.2 14.0 188 28-250 89-276 (280)
87 PRK09782 bacteriophage N4 rece 96.3 0.51 1.1E-05 53.5 21.4 191 28-248 521-737 (987)
88 KOG2076 RNA polymerase III tra 96.3 0.4 8.7E-06 52.1 19.0 53 27-83 150-202 (895)
89 PRK10049 pgaA outer membrane p 96.3 0.19 4.1E-06 55.7 17.5 163 29-212 285-457 (765)
90 PRK10370 formate-dependent nit 96.3 0.15 3.2E-06 46.6 14.1 52 29-84 52-103 (198)
91 PF13424 TPR_12: Tetratricopep 96.3 0.025 5.5E-07 42.9 7.7 70 137-211 6-75 (78)
92 cd00189 TPR Tetratricopeptide 96.3 0.088 1.9E-06 39.3 10.9 94 139-250 3-96 (100)
93 TIGR02795 tol_pal_ybgF tol-pal 96.2 0.06 1.3E-06 43.7 10.0 94 28-167 14-107 (119)
94 KOG1173 Anaphase-promoting com 96.1 0.39 8.4E-06 49.7 17.3 174 17-212 317-519 (611)
95 KOG1130 Predicted G-alpha GTPa 96.1 0.46 1E-05 47.5 17.1 120 28-152 29-151 (639)
96 TIGR02552 LcrH_SycD type III s 96.0 0.25 5.4E-06 41.4 13.4 111 38-212 5-115 (135)
97 PRK11189 lipoprotein NlpI; Pro 96.0 0.27 5.9E-06 47.8 15.3 52 29-84 77-128 (296)
98 CHL00033 ycf3 photosystem I as 95.9 0.19 4.2E-06 44.3 12.8 108 138-254 37-145 (168)
99 KOG1156 N-terminal acetyltrans 95.9 2.9 6.2E-05 44.2 22.6 98 141-250 148-247 (700)
100 PLN03081 pentatricopeptide (PP 95.9 0.35 7.5E-06 52.9 17.3 89 140-248 466-554 (697)
101 KOG2300 Uncharacterized conser 95.9 1.1 2.5E-05 45.7 18.9 180 55-244 324-507 (629)
102 KOG1155 Anaphase-promoting com 95.9 0.38 8.3E-06 48.7 15.5 156 31-209 379-534 (559)
103 KOG2002 TPR-containing nuclear 95.8 1.9 4E-05 47.6 21.4 99 134-250 494-592 (1018)
104 KOG1126 DNA-binding cell divis 95.8 0.15 3.3E-06 53.4 12.8 149 30-208 469-617 (638)
105 PLN03088 SGT1, suppressor of 95.8 0.075 1.6E-06 53.2 10.5 90 26-167 12-101 (356)
106 PF13414 TPR_11: TPR repeat; P 95.7 0.025 5.5E-07 41.7 5.1 53 28-84 15-68 (69)
107 KOG1156 N-terminal acetyltrans 95.6 3.6 7.8E-05 43.5 22.0 124 137-272 372-535 (700)
108 COG3063 PilF Tfp pilus assembl 95.6 0.4 8.6E-06 44.4 13.4 154 27-208 46-199 (250)
109 PRK15359 type III secretion sy 95.5 0.15 3.3E-06 44.0 10.2 29 139-167 95-123 (144)
110 PF09012 FeoC: FeoC like trans 95.5 0.021 4.5E-07 42.8 4.1 49 345-393 4-52 (69)
111 KOG0547 Translocase of outer m 95.4 1.4 3.1E-05 45.1 17.6 102 137-250 463-565 (606)
112 KOG2076 RNA polymerase III tra 95.4 2.6 5.5E-05 46.1 20.5 202 28-251 219-478 (895)
113 KOG1155 Anaphase-promoting com 95.4 3.8 8.2E-05 41.8 21.0 200 28-250 274-535 (559)
114 PF13432 TPR_16: Tetratricopep 95.3 0.12 2.7E-06 37.5 7.8 61 140-212 1-61 (65)
115 KOG1125 TPR repeat-containing 95.3 1.4 3.1E-05 45.8 17.7 98 134-250 428-526 (579)
116 PF13424 TPR_12: Tetratricopep 95.2 0.26 5.6E-06 37.2 9.6 72 181-252 4-76 (78)
117 PLN03077 Protein ECB2; Provisi 95.2 1.7 3.8E-05 48.6 20.0 92 141-247 559-650 (857)
118 PF13512 TPR_18: Tetratricopep 95.2 0.1 2.2E-06 44.9 7.7 70 16-87 9-79 (142)
119 PRK14574 hmsH outer membrane p 95.2 3.2 6.9E-05 46.2 21.4 161 58-251 38-198 (822)
120 TIGR02552 LcrH_SycD type III s 95.1 0.35 7.5E-06 40.5 11.2 95 139-251 20-114 (135)
121 PF12895 Apc3: Anaphase-promot 95.1 0.29 6.3E-06 37.7 9.8 84 148-248 1-84 (84)
122 KOG1861 Leucine permease trans 95.1 0.12 2.6E-06 52.2 9.0 139 223-368 349-491 (540)
123 cd00189 TPR Tetratricopeptide 95.1 0.22 4.8E-06 37.0 9.1 85 29-165 13-97 (100)
124 CHL00033 ycf3 photosystem I as 95.0 1.1 2.5E-05 39.2 14.4 130 28-209 11-140 (168)
125 PRK04841 transcriptional regul 94.9 8.3 0.00018 43.3 36.5 219 28-256 464-725 (903)
126 KOG1586 Protein required for f 94.9 3.3 7.1E-05 38.7 23.0 106 232-339 164-278 (288)
127 PF13371 TPR_9: Tetratricopept 94.8 0.12 2.6E-06 38.4 6.6 53 28-84 7-59 (73)
128 TIGR00540 hemY_coli hemY prote 94.8 1.6 3.6E-05 44.4 17.0 17 29-45 200-216 (409)
129 KOG1941 Acetylcholine receptor 94.7 4.5 9.8E-05 40.1 18.4 224 29-257 19-281 (518)
130 PRK10747 putative protoheme IX 94.7 4.4 9.5E-05 41.1 19.7 190 27-248 129-320 (398)
131 COG3063 PilF Tfp pilus assembl 94.7 0.5 1.1E-05 43.8 11.3 117 137-274 36-152 (250)
132 PF13414 TPR_11: TPR repeat; P 94.6 0.29 6.3E-06 35.9 8.1 62 139-212 6-68 (69)
133 KOG0495 HAT repeat protein [RN 94.4 4.1 8.9E-05 43.3 18.3 189 29-254 597-785 (913)
134 KOG2376 Signal recognition par 94.3 3.4 7.3E-05 43.3 17.5 153 30-208 93-250 (652)
135 KOG3060 Uncharacterized conser 94.3 4.8 0.0001 38.0 22.1 195 25-251 21-220 (289)
136 KOG1129 TPR repeat-containing 94.3 1 2.2E-05 44.0 12.7 164 57-253 226-389 (478)
137 PRK15363 pathogenicity island 94.2 2 4.4E-05 37.6 13.6 96 139-252 38-133 (157)
138 PF10345 Cohesin_load: Cohesin 94.2 2.9 6.3E-05 45.0 18.0 141 112-259 30-176 (608)
139 PRK15359 type III secretion sy 94.1 0.89 1.9E-05 39.1 11.4 93 140-250 28-120 (144)
140 PLN03088 SGT1, suppressor of 94.1 0.63 1.4E-05 46.6 11.8 93 140-250 6-98 (356)
141 PLN03077 Protein ECB2; Provisi 94.0 2.4 5.3E-05 47.5 17.6 114 30-162 538-651 (857)
142 PF13176 TPR_7: Tetratricopept 94.0 0.14 3.1E-06 32.8 4.7 29 56-84 1-29 (36)
143 PRK10803 tol-pal system protei 93.9 1.4 3.1E-05 42.1 13.3 103 54-210 143-245 (263)
144 KOG3081 Vesicle coat complex C 93.9 1.9 4.1E-05 40.9 13.5 143 141-301 113-281 (299)
145 COG1729 Uncharacterized protei 93.9 0.37 8.1E-06 45.7 9.0 103 20-168 144-247 (262)
146 KOG1586 Protein required for f 93.7 6 0.00013 37.0 20.9 99 112-218 130-231 (288)
147 KOG0624 dsRNA-activated protei 93.7 7.8 0.00017 38.2 17.8 182 10-213 31-254 (504)
148 PF10602 RPN7: 26S proteasome 93.7 2.3 4.9E-05 38.1 13.5 111 50-165 32-142 (177)
149 KOG0548 Molecular co-chaperone 93.6 10 0.00022 39.3 22.3 154 53-250 297-454 (539)
150 PRK15179 Vi polysaccharide bio 93.4 7.9 0.00017 42.3 19.4 150 32-211 68-217 (694)
151 KOG2376 Signal recognition par 92.7 5.9 0.00013 41.6 16.1 131 32-167 357-489 (652)
152 PF09295 ChAPs: ChAPs (Chs5p-A 92.7 3.3 7.1E-05 42.0 14.3 86 139-242 203-288 (395)
153 PRK14574 hmsH outer membrane p 92.6 21 0.00045 40.0 22.7 201 32-248 267-476 (822)
154 PRK15179 Vi polysaccharide bio 92.4 3.1 6.7E-05 45.4 14.6 120 29-166 99-218 (694)
155 PRK15431 ferrous iron transpor 92.1 0.3 6.6E-06 37.2 4.6 52 345-396 6-57 (78)
156 KOG0550 Molecular chaperone (D 92.0 7 0.00015 39.4 15.1 197 33-252 149-351 (486)
157 KOG0495 HAT repeat protein [RN 91.7 14 0.0003 39.6 17.4 201 29-266 631-860 (913)
158 PRK02603 photosystem I assembl 91.6 2.3 5E-05 37.5 10.7 55 29-84 48-102 (172)
159 PF08784 RPA_C: Replication pr 91.6 0.16 3.4E-06 41.1 2.7 38 354-391 64-101 (102)
160 PF03704 BTAD: Bacterial trans 91.5 7.9 0.00017 32.8 14.1 122 53-212 5-126 (146)
161 KOG3060 Uncharacterized conser 91.5 13 0.00028 35.3 18.3 134 55-213 87-222 (289)
162 COG2976 Uncharacterized protei 91.5 7.9 0.00017 35.1 13.6 61 139-212 129-189 (207)
163 PF03704 BTAD: Bacterial trans 91.5 1.4 3.1E-05 37.5 8.9 53 28-84 74-126 (146)
164 COG4783 Putative Zn-dependent 91.4 10 0.00022 39.0 15.8 53 140-204 378-430 (484)
165 COG4105 ComL DNA uptake lipopr 91.4 13 0.00028 35.1 17.5 151 54-256 34-201 (254)
166 PRK14720 transcript cleavage f 91.3 24 0.00053 39.6 20.0 136 50-208 27-175 (906)
167 KOG1129 TPR repeat-containing 91.2 6 0.00013 38.8 13.3 150 32-209 272-422 (478)
168 PF04733 Coatomer_E: Coatomer 91.1 16 0.00034 35.5 17.4 45 27-75 12-56 (290)
169 PF12688 TPR_5: Tetratrico pep 91.1 4.9 0.00011 33.5 11.3 63 21-84 5-68 (120)
170 PF08220 HTH_DeoR: DeoR-like h 90.7 0.72 1.6E-05 33.0 5.2 53 343-399 2-54 (57)
171 PF14559 TPR_19: Tetratricopep 90.5 0.83 1.8E-05 33.2 5.7 53 147-211 2-54 (68)
172 KOG3054 Uncharacterized conser 90.5 0.45 9.8E-06 43.9 4.8 62 347-408 206-269 (299)
173 KOG1941 Acetylcholine receptor 90.3 21 0.00046 35.6 19.2 193 31-235 137-344 (518)
174 PF13431 TPR_17: Tetratricopep 89.9 0.4 8.7E-06 30.4 2.9 32 39-74 2-33 (34)
175 PF13371 TPR_9: Tetratricopept 89.6 1.5 3.3E-05 32.2 6.6 59 142-212 1-59 (73)
176 KOG0547 Translocase of outer m 89.6 28 0.00061 36.1 19.9 135 113-273 404-547 (606)
177 PF13174 TPR_6: Tetratricopept 89.2 0.71 1.5E-05 28.2 3.7 29 56-84 2-30 (33)
178 KOG2908 26S proteasome regulat 89.1 24 0.00052 34.8 15.5 124 68-200 52-175 (380)
179 KOG1130 Predicted G-alpha GTPa 89.1 3.2 6.9E-05 41.8 9.8 133 31-165 170-304 (639)
180 PF13176 TPR_7: Tetratricopept 88.9 0.73 1.6E-05 29.4 3.7 29 139-167 2-30 (36)
181 PF09295 ChAPs: ChAPs (Chs5p-A 88.8 10 0.00022 38.5 13.7 115 30-166 183-298 (395)
182 PRK15363 pathogenicity island 88.7 6 0.00013 34.6 10.4 51 29-83 48-98 (157)
183 PRK14720 transcript cleavage f 88.6 21 0.00046 40.0 16.8 125 30-167 130-254 (906)
184 PF13512 TPR_18: Tetratricopep 88.5 14 0.0003 31.8 12.2 86 140-237 14-99 (142)
185 PF13412 HTH_24: Winged helix- 88.4 1.2 2.6E-05 30.4 4.8 42 345-386 7-48 (48)
186 PF07719 TPR_2: Tetratricopept 88.4 1.3 2.9E-05 27.2 4.6 30 55-84 2-31 (34)
187 PRK15331 chaperone protein Sic 88.2 18 0.00039 32.0 14.5 95 139-251 40-134 (165)
188 COG5010 TadD Flp pilus assembl 87.9 16 0.00034 34.6 13.2 120 60-205 106-225 (257)
189 KOG0624 dsRNA-activated protei 87.8 30 0.00066 34.3 21.0 203 27-250 117-369 (504)
190 PF12688 TPR_5: Tetratrico pep 87.4 16 0.00034 30.5 12.4 101 138-250 3-103 (120)
191 KOG3616 Selective LIM binding 87.2 23 0.00049 38.5 15.0 101 60-163 712-818 (1636)
192 COG3118 Thioredoxin domain-con 87.1 16 0.00034 35.3 12.9 132 16-168 133-268 (304)
193 PF00515 TPR_1: Tetratricopept 86.8 1.9 4E-05 26.7 4.6 30 55-84 2-31 (34)
194 KOG4340 Uncharacterized conser 86.8 32 0.0007 33.4 14.9 181 29-250 23-206 (459)
195 KOG0553 TPR repeat-containing 86.5 6.8 0.00015 37.8 10.1 99 53-165 80-178 (304)
196 KOG0543 FKBP-type peptidyl-pro 86.4 8.9 0.00019 38.5 11.2 105 140-250 212-319 (397)
197 PF13181 TPR_8: Tetratricopept 86.0 2.3 5E-05 26.2 4.7 30 55-84 2-31 (34)
198 PF13374 TPR_10: Tetratricopep 85.9 2.1 4.5E-05 27.5 4.7 31 54-84 2-32 (42)
199 COG2976 Uncharacterized protei 85.7 15 0.00032 33.5 11.2 98 139-252 92-189 (207)
200 smart00550 Zalpha Z-DNA-bindin 85.5 1.8 3.9E-05 32.1 4.7 44 344-387 9-54 (68)
201 PF13374 TPR_10: Tetratricopep 85.0 1.9 4.2E-05 27.6 4.2 33 137-169 3-35 (42)
202 PF13174 TPR_6: Tetratricopept 84.8 2.1 4.7E-05 25.9 4.1 29 139-167 3-31 (33)
203 KOG2300 Uncharacterized conser 84.8 53 0.0011 34.1 27.0 221 31-251 104-396 (629)
204 KOG0543 FKBP-type peptidyl-pro 84.6 48 0.001 33.5 16.4 111 57-212 211-321 (397)
205 KOG0553 TPR repeat-containing 84.6 15 0.00032 35.6 11.3 92 141-250 86-177 (304)
206 KOG0548 Molecular co-chaperone 83.4 41 0.00088 35.1 14.5 116 32-165 340-455 (539)
207 PF13181 TPR_8: Tetratricopept 83.2 3.1 6.6E-05 25.6 4.4 28 138-165 3-30 (34)
208 PF12802 MarR_2: MarR family; 83.1 3.9 8.4E-05 29.2 5.5 48 347-394 11-60 (62)
209 PF07719 TPR_2: Tetratricopept 83.0 3.3 7.1E-05 25.3 4.5 29 138-166 3-31 (34)
210 KOG4234 TPR repeat-containing 82.8 13 0.00029 34.0 9.6 117 36-165 76-197 (271)
211 KOG1174 Anaphase-promoting com 82.5 51 0.0011 33.6 14.4 151 32-211 350-500 (564)
212 TIGR03504 FimV_Cterm FimV C-te 82.0 2 4.4E-05 29.0 3.3 27 139-165 2-28 (44)
213 KOG1070 rRNA processing protei 81.5 41 0.00088 39.2 14.7 130 56-209 1532-1661(1710)
214 smart00345 HTH_GNTR helix_turn 81.2 3.6 7.8E-05 28.8 4.7 37 350-386 14-51 (60)
215 COG5010 TadD Flp pilus assembl 80.8 36 0.00077 32.3 12.2 112 142-276 106-217 (257)
216 KOG1585 Protein required for f 80.2 55 0.0012 31.1 20.5 25 294-318 227-251 (308)
217 PF10579 Rapsyn_N: Rapsyn N-te 79.5 5.1 0.00011 30.7 5.1 49 30-79 20-68 (80)
218 cd00090 HTH_ARSR Arsenical Res 79.2 11 0.00024 27.3 7.1 45 356-400 21-65 (78)
219 PF08279 HTH_11: HTH domain; 78.6 5.9 0.00013 27.6 5.0 40 344-383 3-43 (55)
220 PF01047 MarR: MarR family; I 78.1 6.1 0.00013 27.9 5.0 49 346-394 8-56 (59)
221 PF12862 Apc5: Anaphase-promot 78.0 18 0.00039 28.4 8.2 60 25-84 7-71 (94)
222 cd07377 WHTH_GntR Winged helix 77.8 7.1 0.00015 27.9 5.5 51 336-386 5-56 (66)
223 PF02082 Rrf2: Transcriptional 77.6 10 0.00023 29.1 6.6 48 355-403 25-72 (83)
224 smart00420 HTH_DEOR helix_turn 77.3 6.6 0.00014 26.6 4.9 34 354-387 13-46 (53)
225 PF04733 Coatomer_E: Coatomer 77.0 74 0.0016 30.8 14.1 62 15-79 66-127 (290)
226 PLN03098 LPA1 LOW PSII ACCUMUL 76.9 7.3 0.00016 39.9 6.8 55 28-83 87-141 (453)
227 COG4235 Cytochrome c biogenesi 76.8 75 0.0016 30.7 16.5 143 24-188 130-273 (287)
228 COG4700 Uncharacterized protei 76.7 60 0.0013 29.6 13.5 186 2-251 29-222 (251)
229 PF04703 FaeA: FaeA-like prote 76.7 3.8 8.3E-05 29.9 3.6 34 353-386 13-46 (62)
230 KOG3785 Uncharacterized conser 76.2 73 0.0016 31.8 13.1 123 28-165 34-180 (557)
231 KOG4414 COP9 signalosome, subu 76.2 7.5 0.00016 33.3 5.6 45 334-378 111-155 (197)
232 smart00344 HTH_ASNC helix_turn 76.0 6.3 0.00014 31.7 5.2 47 345-391 7-56 (108)
233 PF00515 TPR_1: Tetratricopept 75.5 7.8 0.00017 23.7 4.5 28 138-165 3-30 (34)
234 PF00325 Crp: Bacterial regula 75.5 4.7 0.0001 25.3 3.2 30 356-385 3-32 (32)
235 COG4700 Uncharacterized protei 75.3 36 0.00078 30.9 9.9 99 139-252 92-190 (251)
236 PF00392 GntR: Bacterial regul 75.2 7.9 0.00017 28.1 5.0 52 336-387 4-56 (64)
237 PF11817 Foie-gras_1: Foie gra 74.4 40 0.00087 31.7 11.0 52 114-165 156-207 (247)
238 PRK11169 leucine-responsive tr 74.3 6.7 0.00014 34.5 5.3 50 343-392 16-68 (164)
239 PF04184 ST7: ST7 protein; In 74.2 81 0.0018 32.9 13.4 157 9-207 164-320 (539)
240 PF13404 HTH_AsnC-type: AsnC-t 73.9 5.5 0.00012 26.6 3.5 35 345-379 7-41 (42)
241 PF13428 TPR_14: Tetratricopep 73.9 7.7 0.00017 25.7 4.3 29 139-167 4-32 (44)
242 smart00419 HTH_CRP helix_turn_ 73.5 5.6 0.00012 26.5 3.7 32 355-386 8-39 (48)
243 PRK11179 DNA-binding transcrip 73.2 6.8 0.00015 34.0 5.0 47 345-391 13-62 (153)
244 smart00418 HTH_ARSR helix_turn 73.1 11 0.00024 26.4 5.4 46 353-398 8-53 (66)
245 PF08631 SPO22: Meiosis protei 72.7 91 0.002 29.8 20.2 174 27-251 4-186 (278)
246 PF09986 DUF2225: Uncharacteri 72.6 18 0.00038 33.5 7.8 52 32-83 141-194 (214)
247 PF01022 HTH_5: Bacterial regu 72.0 12 0.00025 25.4 4.9 33 354-386 14-46 (47)
248 TIGR03879 near_KaiC_dom probab 71.9 5.3 0.00011 30.2 3.4 37 349-385 26-62 (73)
249 PF14853 Fis1_TPR_C: Fis1 C-te 71.6 23 0.00049 24.9 6.4 30 55-84 2-31 (53)
250 PRK09954 putative kinase; Prov 71.3 11 0.00023 37.7 6.6 54 346-399 8-64 (362)
251 PRK10153 DNA-binding transcrip 70.8 65 0.0014 34.0 12.5 60 142-214 426-485 (517)
252 COG1522 Lrp Transcriptional re 70.6 8.2 0.00018 33.1 4.9 46 346-391 13-61 (154)
253 KOG1125 TPR repeat-containing 70.2 11 0.00024 39.5 6.3 127 25-167 402-529 (579)
254 KOG2041 WD40 repeat protein [G 69.8 96 0.0021 33.8 13.0 55 190-248 768-822 (1189)
255 KOG3151 26S proteasome regulat 69.8 60 0.0013 30.4 10.3 74 293-371 135-208 (260)
256 PF07721 TPR_4: Tetratricopept 69.7 7 0.00015 22.8 3.0 23 138-160 3-25 (26)
257 COG1729 Uncharacterized protei 69.2 15 0.00033 34.9 6.6 67 27-95 189-255 (262)
258 KOG3250 COP9 signalosome, subu 69.2 5.5 0.00012 36.5 3.5 97 293-399 57-154 (258)
259 PF13428 TPR_14: Tetratricopep 68.9 15 0.00034 24.2 5.0 29 56-84 3-31 (44)
260 PRK11014 transcriptional repre 68.8 14 0.0003 31.6 5.9 51 351-401 21-71 (141)
261 cd00092 HTH_CRP helix_turn_hel 68.7 7.8 0.00017 27.9 3.7 34 354-387 24-57 (67)
262 KOG0550 Molecular chaperone (D 68.7 1.4E+02 0.0031 30.4 15.1 166 29-213 182-352 (486)
263 TIGR02010 IscR iron-sulfur clu 68.7 14 0.00031 31.3 5.9 48 354-401 24-71 (135)
264 PF01535 PPR: PPR repeat; Int 68.5 7.9 0.00017 22.8 3.2 26 57-82 3-28 (31)
265 PF10300 DUF3808: Protein of u 68.2 67 0.0014 33.4 11.8 105 149-273 246-351 (468)
266 TIGR02787 codY_Gpos GTP-sensin 68.0 20 0.00043 33.6 6.9 36 354-389 197-232 (251)
267 KOG1070 rRNA processing protei 67.3 2.7E+02 0.0058 33.0 20.9 187 32-252 1441-1630(1710)
268 PF13812 PPR_3: Pentatricopept 66.7 15 0.00032 22.2 4.3 28 56-83 3-30 (34)
269 KOG3616 Selective LIM binding 66.3 1.2E+02 0.0026 33.2 13.0 64 137-213 733-796 (1636)
270 PF01325 Fe_dep_repress: Iron 66.0 15 0.00033 26.5 4.7 39 348-386 15-53 (60)
271 TIGR03504 FimV_Cterm FimV C-te 65.9 15 0.00032 24.8 4.3 25 59-83 4-28 (44)
272 PHA02943 hypothetical protein; 65.7 52 0.0011 28.6 8.4 59 345-405 15-73 (165)
273 PRK11920 rirA iron-responsive 65.6 15 0.00032 32.0 5.5 49 353-401 22-70 (153)
274 PF13545 HTH_Crp_2: Crp-like h 65.4 12 0.00026 27.8 4.3 44 355-402 28-71 (76)
275 PF09339 HTH_IclR: IclR helix- 65.3 15 0.00032 25.4 4.4 34 353-386 16-49 (52)
276 COG3071 HemY Uncharacterized e 65.2 1.6E+02 0.0035 29.7 14.3 120 60-209 269-388 (400)
277 KOG3617 WD40 and TPR repeat-co 65.2 2.4E+02 0.0051 31.7 16.8 23 58-80 761-783 (1416)
278 COG1959 Predicted transcriptio 65.1 12 0.00026 32.5 4.8 58 344-401 12-71 (150)
279 PF12728 HTH_17: Helix-turn-he 65.0 12 0.00026 25.6 4.0 50 356-412 2-51 (51)
280 COG4235 Cytochrome c biogenesi 64.9 25 0.00054 34.0 7.2 60 18-84 198-257 (287)
281 PRK10434 srlR DNA-bindng trans 64.7 10 0.00022 36.0 4.6 44 342-385 6-49 (256)
282 PF10345 Cohesin_load: Cohesin 64.5 2.1E+02 0.0045 30.8 26.0 217 30-252 74-331 (608)
283 KOG1127 TPR repeat-containing 64.3 86 0.0019 35.5 11.7 50 29-82 575-624 (1238)
284 PF12840 HTH_20: Helix-turn-he 63.8 18 0.0004 25.8 4.9 41 347-387 16-56 (61)
285 PF08221 HTH_9: RNA polymerase 63.7 27 0.00058 25.4 5.7 39 348-386 20-58 (62)
286 PRK10411 DNA-binding transcrip 63.3 12 0.00025 35.3 4.7 45 342-386 5-49 (240)
287 TIGR00756 PPR pentatricopeptid 63.1 15 0.00033 21.9 3.9 28 56-83 2-29 (35)
288 PF09743 DUF2042: Uncharacteri 62.6 36 0.00078 32.7 7.9 56 332-392 112-167 (272)
289 PF13463 HTH_27: Winged helix 61.8 34 0.00074 24.6 6.2 43 351-393 14-56 (68)
290 PF04097 Nic96: Nup93/Nic96; 61.0 72 0.0016 34.5 10.8 125 32-165 393-534 (613)
291 PRK14165 winged helix-turn-hel 60.5 53 0.0012 30.4 8.4 53 349-401 15-67 (217)
292 PRK06266 transcription initiat 60.5 29 0.00062 31.1 6.4 64 325-389 5-70 (178)
293 KOG3617 WD40 and TPR repeat-co 60.2 2.9E+02 0.0062 31.0 17.5 31 54-84 967-997 (1416)
294 PF06163 DUF977: Bacterial pro 60.0 23 0.0005 29.7 5.2 41 346-386 17-57 (127)
295 PF06552 TOM20_plant: Plant sp 60.0 33 0.00073 30.8 6.6 52 32-87 51-106 (186)
296 PRK10857 DNA-binding transcrip 59.7 21 0.00046 31.5 5.4 48 354-401 24-71 (164)
297 KOG4340 Uncharacterized conser 59.0 35 0.00076 33.2 7.0 52 28-83 156-207 (459)
298 KOG3252 Uncharacterized conser 58.8 34 0.00075 30.7 6.4 93 293-399 96-189 (217)
299 TIGR01610 phage_O_Nterm phage 58.8 32 0.0007 27.2 5.9 48 352-401 44-91 (95)
300 PRK13509 transcriptional repre 58.8 16 0.00036 34.5 4.9 45 342-386 6-50 (251)
301 PRK04424 fatty acid biosynthes 58.6 10 0.00022 34.1 3.3 44 342-385 8-51 (185)
302 KOG4555 TPR repeat-containing 58.6 54 0.0012 28.1 7.2 64 30-98 57-120 (175)
303 PRK10906 DNA-binding transcrip 58.4 16 0.00034 34.7 4.7 46 341-386 5-50 (252)
304 TIGR00738 rrf2_super rrf2 fami 58.2 31 0.00068 28.7 6.1 46 355-401 25-70 (132)
305 smart00028 TPR Tetratricopepti 58.1 20 0.00044 20.0 3.7 29 55-83 2-30 (34)
306 TIGR02944 suf_reg_Xantho FeS a 57.9 13 0.00028 31.1 3.6 42 354-395 24-65 (130)
307 KOG2796 Uncharacterized conser 57.2 1.9E+02 0.0041 27.9 16.8 104 137-251 178-281 (366)
308 PF12862 Apc5: Anaphase-promot 57.1 92 0.002 24.3 9.4 68 147-217 9-76 (94)
309 PF12739 TRAPPC-Trs85: ER-Golg 57.0 2.3E+02 0.005 28.9 18.9 183 52-254 206-402 (414)
310 PF11207 DUF2989: Protein of u 56.8 19 0.00041 32.9 4.6 45 29-73 153-197 (203)
311 PF04545 Sigma70_r4: Sigma-70, 56.5 27 0.00058 23.8 4.4 29 353-381 18-46 (50)
312 TIGR02702 SufR_cyano iron-sulf 56.0 31 0.00066 31.4 6.0 57 345-401 5-66 (203)
313 smart00346 HTH_ICLR helix_turn 55.9 26 0.00057 26.9 4.9 52 346-399 10-62 (91)
314 PF11817 Foie-gras_1: Foie gra 55.8 1.7E+02 0.0038 27.4 11.3 53 32-84 154-208 (247)
315 TIGR00373 conserved hypothetic 55.6 33 0.00071 30.0 5.9 47 352-398 25-73 (158)
316 PF13041 PPR_2: PPR repeat fam 55.4 25 0.00053 23.8 4.1 29 55-83 4-32 (50)
317 COG1349 GlpR Transcriptional r 55.3 18 0.00038 34.4 4.5 45 342-386 6-50 (253)
318 PF12854 PPR_1: PPR repeat 54.6 21 0.00046 22.2 3.4 27 54-80 7-33 (34)
319 KOG1173 Anaphase-promoting com 53.6 3E+02 0.0066 29.2 19.1 92 140-249 350-441 (611)
320 PF01978 TrmB: Sugar-specific 53.3 40 0.00088 24.5 5.3 40 352-391 19-58 (68)
321 PF14561 TPR_20: Tetratricopep 52.9 56 0.0012 25.6 6.3 66 35-105 7-72 (90)
322 PF01726 LexA_DNA_bind: LexA D 52.8 29 0.00062 25.5 4.3 32 355-386 25-57 (65)
323 KOG4162 Predicted calmodulin-b 52.8 3.6E+02 0.0077 29.8 17.2 64 137-212 651-714 (799)
324 PF04967 HTH_10: HTH DNA bindi 52.5 20 0.00044 25.2 3.2 28 354-381 22-49 (53)
325 PF13730 HTH_36: Helix-turn-he 52.0 19 0.00041 24.9 3.2 30 356-385 26-55 (55)
326 TIGR02337 HpaR homoprotocatech 51.7 44 0.00095 27.3 5.8 50 352-401 39-91 (118)
327 smart00347 HTH_MARR helix_turn 51.7 32 0.00069 26.6 4.8 45 348-392 17-61 (101)
328 PF08311 Mad3_BUB1_I: Mad3/BUB 51.2 1.4E+02 0.0031 24.8 9.2 80 113-208 43-125 (126)
329 TIGR02844 spore_III_D sporulat 50.9 22 0.00048 27.4 3.5 34 342-376 7-40 (80)
330 KOG2114 Vacuolar assembly/sort 50.5 1.2E+02 0.0026 33.7 9.9 58 49-106 363-422 (933)
331 PRK09802 DNA-binding transcrip 50.3 24 0.00051 33.8 4.5 45 342-386 18-62 (269)
332 KOG0985 Vesicle coat protein c 50.2 4.2E+02 0.009 30.6 14.0 59 23-83 990-1049(1666)
333 KOG1127 TPR repeat-containing 49.9 4.5E+02 0.0098 30.1 19.1 195 18-250 460-658 (1238)
334 KOG3364 Membrane protein invol 49.7 58 0.0013 27.9 6.1 52 31-84 50-101 (149)
335 TIGR01764 excise DNA binding d 49.7 39 0.00085 22.2 4.4 45 356-407 2-46 (49)
336 PRK10681 DNA-binding transcrip 49.6 21 0.00047 33.7 4.0 40 341-380 7-46 (252)
337 PF04053 Coatomer_WDAD: Coatom 49.3 93 0.002 32.2 8.9 103 57-209 298-400 (443)
338 KOG3677 RNA polymerase I-assoc 48.1 3.2E+02 0.007 28.0 17.2 202 186-401 239-486 (525)
339 PF09670 Cas_Cas02710: CRISPR- 47.9 3.1E+02 0.0067 27.7 14.8 74 9-84 123-199 (379)
340 PRK15331 chaperone protein Sic 47.6 45 0.00098 29.5 5.4 49 29-81 50-98 (165)
341 PF02002 TFIIE_alpha: TFIIE al 47.5 23 0.0005 28.5 3.4 36 353-388 25-60 (105)
342 TIGR01884 cas_HTH CRISPR locus 46.6 62 0.0013 29.4 6.5 40 350-389 152-191 (203)
343 PF14947 HTH_45: Winged helix- 46.5 44 0.00096 25.2 4.6 45 353-401 17-61 (77)
344 PLN03098 LPA1 LOW PSII ACCUMUL 46.3 1.1E+02 0.0023 31.7 8.5 66 137-211 76-141 (453)
345 PF05331 DUF742: Protein of un 46.1 40 0.00087 27.9 4.6 43 345-389 47-89 (114)
346 PF10668 Phage_terminase: Phag 46.1 32 0.00069 24.9 3.5 35 344-378 11-45 (60)
347 COG2345 Predicted transcriptio 46.0 51 0.0011 30.5 5.7 44 345-388 15-58 (218)
348 COG5187 RPN7 26S proteasome re 44.2 3.2E+02 0.0069 26.7 13.6 126 34-167 93-223 (412)
349 PF08280 HTH_Mga: M protein tr 43.8 50 0.0011 23.5 4.3 39 342-380 6-44 (59)
350 PF08424 NRDE-2: NRDE-2, neces 43.6 3.2E+02 0.007 26.7 15.9 127 32-167 47-185 (321)
351 PF13601 HTH_34: Winged helix 43.3 72 0.0016 24.3 5.4 49 346-394 5-53 (80)
352 KOG2047 mRNA splicing factor [ 43.0 4.8E+02 0.01 28.5 16.1 122 31-165 318-454 (835)
353 COG1497 Predicted transcriptio 41.8 71 0.0015 30.0 5.9 52 347-401 17-68 (260)
354 cd06171 Sigma70_r4 Sigma70, re 41.7 65 0.0014 21.1 4.6 27 354-380 25-51 (55)
355 PRK11534 DNA-binding transcrip 41.5 1.1E+02 0.0024 27.9 7.5 63 334-398 9-71 (224)
356 PF12486 DUF3702: ImpA domain 41.4 15 0.00033 31.8 1.4 17 407-423 77-93 (148)
357 PF04492 Phage_rep_O: Bacterio 41.3 35 0.00077 27.5 3.5 35 351-385 50-84 (100)
358 PF10771 DUF2582: Protein of u 41.2 81 0.0018 23.2 5.1 50 347-398 14-63 (65)
359 TIGR03338 phnR_burk phosphonat 40.6 1.2E+02 0.0027 27.3 7.5 65 335-401 14-78 (212)
360 PF04910 Tcf25: Transcriptiona 40.3 3.9E+02 0.0085 26.7 11.9 126 51-206 37-163 (360)
361 KOG0551 Hsp90 co-chaperone CNS 40.0 1.9E+02 0.0041 28.8 8.7 91 149-248 55-145 (390)
362 KOG1538 Uncharacterized conser 39.4 5.4E+02 0.012 28.1 13.3 26 58-83 649-674 (1081)
363 PF05584 Sulfolobus_pRN: Sulfo 39.2 1.3E+02 0.0028 22.7 5.9 34 354-387 17-50 (72)
364 COG3629 DnrI DNA-binding trans 39.1 1.8E+02 0.004 28.0 8.5 65 135-211 152-216 (280)
365 PF09743 DUF2042: Uncharacteri 38.5 1.6E+02 0.0035 28.3 8.1 73 345-426 185-263 (272)
366 PRK03837 transcriptional regul 38.2 1.1E+02 0.0024 28.2 7.0 63 335-399 16-79 (241)
367 KOG2034 Vacuolar sorting prote 38.1 94 0.002 34.6 7.0 56 190-254 366-421 (911)
368 PF14493 HTH_40: Helix-turn-he 38.0 36 0.00078 26.6 3.1 33 354-386 12-45 (91)
369 PF10516 SHNi-TPR: SHNi-TPR; 37.8 50 0.0011 21.5 3.1 28 224-251 3-30 (38)
370 PF10155 DUF2363: Uncharacteri 37.4 2.5E+02 0.0054 23.6 11.1 69 29-108 2-70 (126)
371 KOG2168 Cullins [Cell cycle co 37.2 3.8E+02 0.0081 30.0 11.3 31 137-167 706-738 (835)
372 PF03745 DUF309: Domain of unk 37.0 1.3E+02 0.0029 21.7 5.7 55 191-245 8-62 (62)
373 PF00244 14-3-3: 14-3-3 protei 36.9 3.5E+02 0.0077 25.2 15.7 179 17-208 1-195 (236)
374 PF08281 Sigma70_r4_2: Sigma-7 36.8 37 0.0008 23.3 2.7 29 352-380 23-51 (54)
375 COG4565 CitB Response regulato 36.8 3.4E+02 0.0073 25.2 9.3 47 346-392 163-210 (224)
376 PF10007 DUF2250: Uncharacteri 36.8 73 0.0016 25.2 4.5 41 346-386 12-52 (92)
377 PRK10046 dpiA two-component re 36.4 78 0.0017 28.9 5.6 46 347-392 169-214 (225)
378 PF12968 DUF3856: Domain of Un 36.2 2.6E+02 0.0057 23.5 9.8 103 25-164 18-128 (144)
379 COG3629 DnrI DNA-binding trans 36.2 1.9E+02 0.0041 28.0 8.1 53 28-84 165-217 (280)
380 PF05470 eIF-3c_N: Eukaryotic 36.1 5.9E+02 0.013 27.5 22.7 225 17-250 220-528 (595)
381 PRK10153 DNA-binding transcrip 36.0 82 0.0018 33.3 6.2 52 28-84 432-483 (517)
382 PRK10225 DNA-binding transcrip 35.8 1.4E+02 0.003 28.0 7.2 65 334-400 11-76 (257)
383 PF15015 NYD-SP12_N: Spermatog 35.4 5.2E+02 0.011 26.7 12.7 131 135-274 175-315 (569)
384 KOG3081 Vesicle coat complex C 35.3 4.2E+02 0.0091 25.6 15.6 148 30-210 69-235 (299)
385 TIGR02812 fadR_gamma fatty aci 35.1 1.1E+02 0.0024 28.2 6.4 63 335-399 9-72 (235)
386 COG3107 LppC Putative lipoprot 34.6 3.2E+02 0.0069 29.0 9.8 216 141-390 68-287 (604)
387 KOG2235 Uncharacterized conser 34.5 1.7E+02 0.0036 31.4 7.8 61 331-398 114-174 (776)
388 PLN02789 farnesyltranstransfer 34.4 4.6E+02 0.0099 25.7 14.4 119 29-165 50-171 (320)
389 PRK03902 manganese transport t 34.1 1.3E+02 0.0029 25.4 6.2 52 347-401 14-65 (142)
390 PRK10870 transcriptional repre 34.0 3.2E+02 0.007 24.1 8.9 42 354-395 70-111 (176)
391 KOG4234 TPR repeat-containing 33.9 2.3E+02 0.005 26.2 7.7 61 26-87 105-166 (271)
392 PF09986 DUF2225: Uncharacteri 33.7 3.8E+02 0.0082 24.6 16.0 94 111-210 92-193 (214)
393 PF04348 LppC: LppC putative l 33.7 14 0.0003 39.2 0.0 98 139-248 27-124 (536)
394 PF10078 DUF2316: Uncharacteri 33.3 40 0.00087 26.5 2.5 24 354-377 22-45 (89)
395 COG3413 Predicted DNA binding 33.2 43 0.00093 30.8 3.2 28 354-381 177-204 (215)
396 PF09613 HrpB1_HrpK: Bacterial 33.1 2.6E+02 0.0057 24.6 7.8 64 180-249 8-71 (160)
397 COG3355 Predicted transcriptio 33.0 2.1E+02 0.0046 24.1 6.9 57 347-403 34-92 (126)
398 PF03081 Exo70: Exo70 exocyst 32.8 1.1E+02 0.0023 30.5 6.3 80 295-379 292-371 (371)
399 PF00440 TetR_N: Bacterial reg 32.7 62 0.0013 21.6 3.2 22 351-372 12-33 (47)
400 PRK11512 DNA-binding transcrip 32.5 93 0.002 26.3 5.0 42 354-395 53-94 (144)
401 PF10516 SHNi-TPR: SHNi-TPR; 32.3 1E+02 0.0022 20.0 4.0 30 55-84 2-31 (38)
402 PF14853 Fis1_TPR_C: Fis1 C-te 32.2 60 0.0013 22.8 3.0 42 19-62 3-45 (53)
403 PRK04239 hypothetical protein; 32.1 31 0.00068 28.2 1.8 52 340-391 37-88 (110)
404 PF04760 IF2_N: Translation in 31.6 44 0.00095 23.2 2.3 24 355-378 3-26 (54)
405 PF08631 SPO22: Meiosis protei 31.3 4.6E+02 0.01 24.9 16.3 108 137-251 36-150 (278)
406 PF03297 Ribosomal_S25: S25 ri 31.3 2E+02 0.0044 23.4 6.4 49 350-398 54-102 (105)
407 KOG3151 26S proteasome regulat 31.2 4.5E+02 0.0099 24.7 9.8 82 300-382 106-188 (260)
408 KOG1128 Uncharacterized conser 31.0 5.2E+02 0.011 28.4 10.9 59 140-210 557-615 (777)
409 PF13542 HTH_Tnp_ISL3: Helix-t 30.4 1.3E+02 0.0029 20.2 4.7 23 356-378 28-50 (52)
410 TIGR00498 lexA SOS regulatory 30.2 71 0.0015 28.7 4.1 39 356-394 26-65 (199)
411 KOG2066 Vacuolar assembly/sort 30.2 6.2E+02 0.013 28.1 11.4 25 141-165 510-534 (846)
412 PF12324 HTH_15: Helix-turn-he 30.1 80 0.0017 24.1 3.6 34 347-380 30-63 (77)
413 PF14689 SPOB_a: Sensor_kinase 29.8 2.1E+02 0.0046 20.5 6.4 35 133-167 20-54 (62)
414 PF06969 HemN_C: HemN C-termin 29.7 2.1E+02 0.0045 20.4 6.1 56 341-401 7-63 (66)
415 smart00421 HTH_LUXR helix_turn 29.7 1.2E+02 0.0025 20.3 4.4 29 353-381 16-44 (58)
416 PF13518 HTH_28: Helix-turn-he 29.4 1E+02 0.0022 20.7 3.9 35 355-390 12-46 (52)
417 COG1802 GntR Transcriptional r 29.3 77 0.0017 29.2 4.3 63 334-398 18-80 (230)
418 TIGR01889 Staph_reg_Sar staphy 29.0 2.2E+02 0.0048 22.8 6.5 41 354-394 42-82 (109)
419 COG3947 Response regulator con 29.0 2.4E+02 0.0052 27.5 7.4 59 137-207 280-338 (361)
420 PRK04984 fatty acid metabolism 28.9 1.7E+02 0.0036 27.1 6.5 61 336-398 11-72 (239)
421 KOG1128 Uncharacterized conser 28.6 8.3E+02 0.018 26.9 12.8 122 60-208 417-545 (777)
422 PLN03083 E3 UFM1-protein ligas 28.5 2.4E+02 0.0053 31.3 8.3 57 333-397 117-173 (803)
423 COG4367 Uncharacterized protei 28.3 55 0.0012 25.6 2.4 24 353-376 21-44 (97)
424 KOG2316 Predicted ATPase (PP-l 28.3 42 0.00091 31.1 2.1 46 349-395 116-167 (277)
425 PRK09464 pdhR transcriptional 28.1 1.6E+02 0.0036 27.4 6.4 63 335-399 13-76 (254)
426 PRK11414 colanic acid/biofilm 28.0 1.2E+02 0.0025 27.8 5.2 61 335-397 14-74 (221)
427 KOG3431 Apoptosis-related prot 27.7 48 0.001 27.5 2.2 52 340-391 40-91 (129)
428 cd06170 LuxR_C_like C-terminal 27.7 1.3E+02 0.0028 20.1 4.3 29 353-381 13-41 (57)
429 KOG2047 mRNA splicing factor [ 27.7 8.4E+02 0.018 26.7 19.4 97 145-249 356-452 (835)
430 smart00653 eIF2B_5 domain pres 27.4 1.4E+02 0.003 24.5 4.9 61 356-420 22-85 (110)
431 PRK13918 CRP/FNR family transc 27.0 1.2E+02 0.0027 26.8 5.1 45 355-403 149-193 (202)
432 KOG2114 Vacuolar assembly/sort 26.5 8.9E+02 0.019 27.2 11.8 45 114-158 345-390 (933)
433 PF10300 DUF3808: Protein of u 26.5 7.4E+02 0.016 25.7 15.3 104 129-248 263-373 (468)
434 PF04539 Sigma70_r3: Sigma-70 26.4 88 0.0019 23.2 3.4 33 346-378 10-43 (78)
435 PF04124 Dor1: Dor1-like famil 26.2 3E+02 0.0065 27.2 8.1 26 59-84 111-136 (338)
436 COG1321 TroR Mn-dependent tran 26.1 1.2E+02 0.0025 26.5 4.5 51 348-401 17-67 (154)
437 KOG4648 Uncharacterized conser 26.1 4.5E+02 0.0099 26.3 8.8 95 57-165 100-194 (536)
438 PRK11753 DNA-binding transcrip 25.9 1.4E+02 0.0031 26.6 5.4 42 355-400 168-209 (211)
439 PF14689 SPOB_a: Sensor_kinase 25.9 1.6E+02 0.0034 21.2 4.5 26 59-84 28-53 (62)
440 KOG3951 Uncharacterized conser 25.5 5.2E+02 0.011 24.5 8.7 20 90-109 96-115 (321)
441 PF13384 HTH_23: Homeodomain-l 25.2 73 0.0016 21.4 2.5 29 355-383 17-45 (50)
442 TIGR02561 HrpB1_HrpK type III 25.1 2.9E+02 0.0063 24.1 6.6 64 181-250 9-72 (153)
443 PRK00135 scpB segregation and 25.1 1.9E+02 0.0041 26.1 5.8 54 356-409 21-77 (188)
444 PRK10421 DNA-binding transcrip 25.0 2.1E+02 0.0047 26.6 6.5 63 335-399 5-68 (253)
445 PF04079 DUF387: Putative tran 24.6 1.3E+02 0.0028 26.4 4.5 55 355-410 13-70 (159)
446 TIGR03826 YvyF flagellar opero 24.4 92 0.002 26.6 3.4 40 347-390 36-77 (137)
447 PF10938 YfdX: YfdX protein; 24.3 4.7E+02 0.01 22.7 8.0 111 140-251 6-146 (155)
448 KOG4555 TPR repeat-containing 24.1 4.7E+02 0.01 22.5 12.7 114 142-273 49-166 (175)
449 PRK11906 transcriptional regul 24.0 5E+02 0.011 27.0 9.1 70 31-108 353-422 (458)
450 cd04761 HTH_MerR-SF Helix-Turn 23.8 1.2E+02 0.0025 20.0 3.3 27 357-387 2-28 (49)
451 cd00280 TRFH Telomeric Repeat 23.7 2.9E+02 0.0064 25.0 6.5 52 32-83 85-140 (200)
452 PF01984 dsDNA_bind: Double-st 23.4 52 0.0011 26.8 1.7 22 370-391 62-83 (107)
453 PRK09334 30S ribosomal protein 23.3 2.6E+02 0.0057 21.8 5.5 37 352-388 38-74 (86)
454 PRK14511 maltooligosyl trehalo 23.0 66 0.0014 36.1 2.9 49 360-411 263-318 (879)
455 PF14561 TPR_20: Tetratricopep 22.6 2.4E+02 0.0051 22.0 5.3 46 28-75 34-79 (90)
456 PHA00738 putative HTH transcri 22.6 3.9E+02 0.0085 21.8 6.5 56 353-408 24-79 (108)
457 PRK15090 DNA-binding transcrip 22.4 1.6E+02 0.0034 27.7 5.1 41 347-387 20-60 (257)
458 COG1747 Uncharacterized N-term 22.3 9.6E+02 0.021 25.5 14.5 35 131-165 199-234 (711)
459 PF08672 APC2: Anaphase promot 22.1 98 0.0021 22.3 2.7 25 364-388 30-54 (60)
460 PF12793 SgrR_N: Sugar transpo 22.1 1.1E+02 0.0025 25.1 3.5 49 353-401 17-68 (115)
461 PRK03573 transcriptional regul 22.0 2.2E+02 0.0047 23.9 5.4 47 355-401 46-95 (144)
462 PF05843 Suf: Suppressor of fo 21.9 6.9E+02 0.015 23.7 12.1 120 32-167 17-138 (280)
463 TIGR02401 trehalose_TreY malto 21.9 1E+02 0.0022 34.4 4.0 40 370-412 233-273 (825)
464 smart00531 TFIIE Transcription 21.9 1.8E+02 0.0039 25.0 4.8 47 352-398 12-63 (147)
465 PF01476 LysM: LysM domain; I 21.8 76 0.0016 20.5 2.0 19 357-375 8-26 (44)
466 PF01865 PhoU_div: Protein of 21.8 2.4E+02 0.0052 25.5 6.0 79 298-383 27-105 (214)
467 PF13613 HTH_Tnp_4: Helix-turn 21.6 1.5E+02 0.0032 20.5 3.5 36 345-380 9-44 (53)
468 PHA02591 hypothetical protein; 21.5 88 0.0019 23.9 2.4 23 355-377 59-81 (83)
469 PRK11523 DNA-binding transcrip 21.4 2.9E+02 0.0062 25.8 6.6 63 335-399 11-74 (253)
470 PF06971 Put_DNA-bind_N: Putat 20.8 1.4E+02 0.003 20.8 3.1 25 353-377 26-50 (50)
471 KOG3785 Uncharacterized conser 20.7 8.8E+02 0.019 24.5 19.4 31 119-149 107-137 (557)
472 PF02259 FAT: FAT domain; Int 20.6 7.5E+02 0.016 23.7 23.1 64 137-208 147-210 (352)
473 PF04190 DUF410: Protein of un 20.6 7.3E+02 0.016 23.4 10.9 98 139-248 13-116 (260)
474 cd04762 HTH_MerR-trunc Helix-T 20.4 1E+02 0.0022 19.9 2.5 28 357-388 2-29 (49)
475 PRK15418 transcriptional regul 20.3 1.5E+02 0.0032 29.1 4.5 40 354-393 28-67 (318)
476 PRK00215 LexA repressor; Valid 20.3 1.6E+02 0.0034 26.6 4.4 43 355-398 23-66 (205)
477 TIGR02325 C_P_lyase_phnF phosp 20.2 3.4E+02 0.0073 24.9 6.8 48 350-399 26-74 (238)
478 KOG1839 Uncharacterized protei 20.2 1.1E+03 0.024 27.8 11.5 149 52-208 971-1125(1236)
479 PRK06771 hypothetical protein; 20.1 65 0.0014 25.5 1.5 30 355-384 36-67 (93)
No 1
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-73 Score=519.86 Aligned_cols=388 Identities=70% Similarity=1.095 Sum_probs=378.3
Q ss_pred cchhhHhHHHHhhcccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh
Q 014350 12 EFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (426)
Q Consensus 12 ~~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~ 91 (426)
+-.|.-++-||++|+++.++|++|+..|+++++.+.++++|+||+|+|++++++..|+++++++.|++++++.++.++++
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 44577789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCC
Q 014350 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (426)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~ 171 (426)
+.+|+++.++|+++.+.+ ...++++|+++++.++.+.|+|+||+++.+|+++|++.|+|.+..+++.++++.|.+.+|
T Consensus 103 ySEKsIN~IlDyiStS~~--m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKN--MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999997555 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 172 ~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+|.+++..++|+++.++++|...+|..+.+.+|+++..+.+++|||.+++.|++|+|.+|+.+|.|.+|...|+++|.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHH
Q 014350 252 YDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331 (426)
Q Consensus 252 ~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 331 (426)
|++.|+|.+..||+|++|+.+|..+++|||+++++.||+++|++-+|..|+.||.+.|+.+|+.++..++..+++|||+.
T Consensus 261 YDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 261 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred ccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 332 ~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+|+++|.++||.++++++++||++|.+.+|++.|++|+.+||.+|+.+|+|.+|+|+||++++.+...+.
T Consensus 341 eh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~ 410 (440)
T KOG1464|consen 341 EHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKS 410 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988664
No 2
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-60 Score=444.79 Aligned_cols=372 Identities=22% Similarity=0.372 Sum_probs=337.9
Q ss_pred HHhhcccCCCC-HHHHHHHHHHHhcCCc------cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHH
Q 014350 21 SILEKGLVETD-PEGALAGFAEVVAMEP------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (426)
Q Consensus 21 ~~~ak~~~~~~-~~~Ai~~~~~ii~~~~------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~ 93 (426)
..+|..+...+ .++++..|+.+++... +..+....++-+++++|.+.|+.+++.++++++++++ ..++|+++
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSKAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhhHHH
Confidence 77888888887 6999999999998521 2245567889999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh-hhhhHHHHh--HHHHHHHHHhccHHHHHHHHHHHHhhcccCC
Q 014350 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTN--LKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (426)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~kl~~r~~--~~La~~~~~~g~~~~A~~ll~el~~~~~~~~ 170 (426)
+|+||.++|.+..+|+ .....++.|.++++|++ ++|.|+|.. -||+.+|++.++|.+|+.++..+..+..+.
T Consensus 87 aKlvR~Lvd~~~~~~~----~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDD----GTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL- 161 (411)
T ss_pred HHHHHHHHHHHccCCC----CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999877 34477888999999986 566788654 599999999999999998888888887765
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 171 ~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
||+ ..++|++++|++.|++++|.+||+..++.|++..|++++ |.+|+.+++++|++|+.++||++|++||+|+|
T Consensus 162 --DDK---~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAf 236 (411)
T KOG1463|consen 162 --DDK---ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAF 236 (411)
T ss_pred --ccc---cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHH
Confidence 564 889999999999999999999999999999999999985 89999999999999999999999999999999
Q ss_pred hhhhhhcc-hhHHHHHHHHHHHHHhhCCC--CC-CCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhc
Q 014350 250 KNYDEAGN-QRRIQCLKYLVLANMLMESE--VN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIM 325 (426)
Q Consensus 250 ~~~~~~~~-~~~~~~lky~~L~~lL~~~~--~~-~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~ 325 (426)
++|+..++ .++...||||+||+||.+.+ ++ .+.++.+.+|. +|.+++|+.+.+||.++++..|+..|.+|+.++.
T Consensus 237 Egf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~-g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 237 EGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYA-GRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhcc-CcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 99998877 49999999999999987653 22 35677777776 6999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchh
Q 014350 326 DDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAY 404 (426)
Q Consensus 326 ~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~ 404 (426)
.||++..|...|++++.++||.++++|||+|.+++||+.+|+|++.||+.|++||+|+++.|.+||++|+++++++++.
T Consensus 316 ~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~~~ 394 (411)
T KOG1463|consen 316 EDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEPPA 394 (411)
T ss_pred cChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-53 Score=385.59 Aligned_cols=370 Identities=21% Similarity=0.320 Sum_probs=328.5
Q ss_pred hhccc-CCCCHHHHHHHHHHHhcCCcc----chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014350 23 LEKGL-VETDPEGALAGFAEVVAMEPE----KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (426)
Q Consensus 23 ~ak~~-~~~~~~~Ai~~~~~ii~~~~~----~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (426)
.|... +..++++||..|++++.+..+ -.+....++-.+.++|...|++..+.+.++++++.+ ..++|++++|++
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchhHHHHH
Confidence 34443 445799999999999998532 234567899999999999999999999999999999 999999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh-hhhhHHHHh--HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcc
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTN--LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~kl~~r~~--~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d 174 (426)
|.+++.++..|+ ....++.++-.+++|+. ++|.|+|.. .+++.++++.|+|.+|..++..+..+...- ||
T Consensus 88 rtLiekf~~~~d----sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---DD 160 (421)
T COG5159 88 RTLIEKFPYSSD----SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---DD 160 (421)
T ss_pred HHHHHhcCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---cC
Confidence 999999998776 46777888888999975 667888665 599999999999999998877777776654 46
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 175 ~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
+ -.++++++.|+++|++.+|.+|+++.++.|++.++++++ |.+|+.++..+|++|+.++||++|++||+|+|++|+
T Consensus 161 K---~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 161 K---INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred c---cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 4 778999999999999999999999999999999999885 789999999999999999999999999999999998
Q ss_pred hh-cchhHHHHHHHHHHHHHhhCCC--C-CCCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChh
Q 014350 254 EA-GNQRRIQCLKYLVLANMLMESE--V-NPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPF 329 (426)
Q Consensus 254 ~~-~~~~~~~~lky~~L~~lL~~~~--~-~~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~ 329 (426)
.. .+.++...|+||+|+.||.+.. + +.+.++.+.+...++.+++|+.+.++|.|+++..|+..|++|.+++..|++
T Consensus 238 ~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 238 LLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 64 3458899999999999987653 2 246666666633368899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 330 IRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 330 l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
+..|++.|++.+.++|+.++++||++|.+++||+.+|+++..||..|++||.|+-++|.+||++||+.+++++.
T Consensus 318 iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~ 391 (421)
T COG5159 318 IRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPA 391 (421)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754
No 4
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-47 Score=364.71 Aligned_cols=366 Identities=13% Similarity=0.209 Sum_probs=320.9
Q ss_pred HHHhhcccCCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014350 20 CSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (426)
Q Consensus 20 ~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (426)
..+.|+++.+.+.++|++.+....++.. +|.....|++..++++|++.++|+.++|++..|.+. +++.|+++++||
T Consensus 16 ~~~~~~~la~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskk--rgqlk~ai~~Mv 93 (439)
T KOG1498|consen 16 LLPKANNLAQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKK--RGQLKQAIQSMV 93 (439)
T ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence 4677888999999999999999976654 678889999999999999999999999999999999 577999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCC
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~ 172 (426)
++++++++.+|| .+++.+++++.+. +++||||+ |++..|+++++++|+.++|++++++++++|++ +
T Consensus 94 q~~~~y~~~~~d--~~~k~~li~tLr~----VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETyg---s 164 (439)
T KOG1498|consen 94 QQAMTYIDGTPD--LETKIKLIETLRT----VTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYG---S 164 (439)
T ss_pred HHHHHhccCCCC--chhHHHHHHHHHH----hhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhh---h
Confidence 999999999998 7799999996555 79999999 88899999999999999999999999999984 5
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-h---hHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P---RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 173 ~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p---~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
+++ +++++++++|||+|+..+||.+|.++.+ +++..+++ | .+.-++|..+..++.|++.|.++|++|..+
T Consensus 165 m~~---~ekV~fiLEQmrKOG~~~D~vra~i~sk---KI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 165 MEK---SEKVAFILEQMRLCLLRLDYVRAQIISK---KINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred hHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHH---HhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 785 9999999999999999999999999854 45555443 4 344577888889999999999999999999
Q ss_pred Hhhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccccC---CCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHh
Q 014350 249 FKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKPYK---NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324 (426)
Q Consensus 249 ~~~~~~~~~~-~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~---~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l 324 (426)
+.+.....+| +|..++.-.+++++|+ +.++.+++..++.. +..++|.+..++++|.++++..|...-+.|++.+
T Consensus 239 y~t~~vk~d~~kw~~vL~~iv~f~~LA--p~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l 316 (439)
T KOG1498|consen 239 YDTGNVKEDPEKWIEVLRSIVSFCVLA--PHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDEL 316 (439)
T ss_pred hcccccccChhhhhhhhhhheeEEeec--CCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHH
Confidence 9988766655 8888999888888888 34455555444432 2356888999999999999999998889999988
Q ss_pred cCChhH------HHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 325 MDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 325 ~~D~~l------~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
..+.++ ..||++|..+|.+||++.+.++||||++.++|+++++|+++.|..||.|+..|.+.||||+|+|++.|
T Consensus 317 ~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F 396 (439)
T KOG1498|consen 317 RTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINF 396 (439)
T ss_pred hhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEE
Confidence 876443 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchh
Q 014350 399 GDRSAY 404 (426)
Q Consensus 399 ~~~~~~ 404 (426)
..+++.
T Consensus 397 ~k~K~~ 402 (439)
T KOG1498|consen 397 QKVKDS 402 (439)
T ss_pred EecccH
Confidence 988643
No 5
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=292.18 Aligned_cols=375 Identities=11% Similarity=0.134 Sum_probs=312.3
Q ss_pred HHHhhcccCCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014350 20 CSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (426)
Q Consensus 20 ~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (426)
++..-.++.+.|.+.|++.+....++.. +|.....+.+..|+.+|++.|+|+.+.+.++.|.+. .++.|+.++-|+
T Consensus 16 ~~~~~~~l~~~d~~~~le~LL~~EkK~RqasD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kK--hGQlk~sI~~MI 93 (439)
T COG5071 16 LQKSLNNLNTIDIDANLEKLLIFEKKVRQASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKK--HGQLKQSITSMI 93 (439)
T ss_pred HhhhhcchhhcchhhHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHH--cchHHHHHHHHH
Confidence 3445567888899999999988866654 577778999999999999999999999999999988 577999999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCC
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~ 172 (426)
++++++...+.| ..+...++++.+. ++++|+|+ |++-.|.+++..+|++.+|++++.++.++|+++
T Consensus 94 q~vmEylKg~~d--l~t~i~~ietlr~----VtEgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETygs--- 164 (439)
T COG5071 94 QHVMEYLKGIDD--LKTKINLIETLRT----VTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGS--- 164 (439)
T ss_pred HHHHHhccCccc--ccchHhHHHHHHH----HhcCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhccc---
Confidence 999999987665 5678888885544 78999998 778899999999999999999999999999854
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 173 DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 173 ~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
++. +.++.++++|+|+|...+||.+|-.+.++.++---.-++ ....-+++..--.+++|++.|.++++|+.+.|.+
T Consensus 165 ~~~---Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t 241 (439)
T COG5071 165 FDL---SEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDT 241 (439)
T ss_pred hhH---HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHH
Confidence 564 899999999999999999999999987776432111111 3444567777888999999999999999999998
Q ss_pred hhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccccCC---CcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCC
Q 014350 252 YDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKPYKN---DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDD 327 (426)
Q Consensus 252 ~~~~~~~-~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~---~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D 327 (426)
....+++ .|..+|..++..++|+ +.++..+...++..+ ....+...+++.+|...++.+|...-..+++.+..|
T Consensus 242 ~~~~~d~Akwk~VLS~~v~F~iLt--py~neq~dlvhKi~~d~kl~sl~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~~ 319 (439)
T COG5071 242 AVVQEDPAKWKEVLSNVVCFALLT--PYDNEQADLLHKINADHKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSALRSN 319 (439)
T ss_pred HHhccCcccccchhhcceeeEEec--ccccHHHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHhhhHHHHHhHHHHHhh
Confidence 8776665 8888887777777777 333333333333322 223566788999999999999999988899888766
Q ss_pred hh-H-----HHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 328 PF-I-----RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 328 ~~-l-----~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.| | ..||++|..++.+||++.|.++||||++.+|...+++|++++|..|+.|+..|-++|+|+|++|+|.|..+
T Consensus 320 ~faF~~e~~~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~ 399 (439)
T COG5071 320 VFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISFEKS 399 (439)
T ss_pred hhhhccchhhhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEeecc
Confidence 33 2 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHH
Q 014350 402 SAYLTFLLL 410 (426)
Q Consensus 402 ~~~~~~~~~ 410 (426)
+...+.+-+
T Consensus 400 ~n~~~~lne 408 (439)
T COG5071 400 QNVQEQLNE 408 (439)
T ss_pred ccHHHHHHH
Confidence 777666543
No 6
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-28 Score=228.20 Aligned_cols=267 Identities=14% Similarity=0.215 Sum_probs=234.1
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
...++.|.+|.+.||.+.|.+.+.+....+.. ...++++.+..+|+.+.-+|..-....+++|+.+...-.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs---------~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVS---------LGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh---------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 34679999999999999999999998887642 266899999999999999999888888889888877777
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCC----CCCcccccccCCC
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN----PFDGQEAKPYKND 292 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~----~~~s~~~~~~~~~ 292 (426)
++.-..+++.+.|++.+.-+||++|+..|.++..||+..+...+..+.+|+++|++++-++.+ .++++++....
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl-- 253 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVL-- 253 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHh--
Confidence 888899999999999999999999999999999999988887888999999999998755443 46677665433
Q ss_pred cccHHHHHHHHHHhhCCHHHHHHHHHH-hHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHH
Q 014350 293 PEILAMTNLIAAYQRNEIIEFEKILKS-NRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (426)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~-~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~e 371 (426)
+.++.+.+++.++..+++..|...|.. ...++..|-++.+|.+...+.+|.+++-|+++||++++++.||+.||+|++.
T Consensus 254 ~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVSVef 333 (393)
T KOG0687|consen 254 HKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVSVEF 333 (393)
T ss_pred hcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 447888999999999999999888854 4788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHcCceeEEEecCCCEEEEecC--ch-hhHHHHHhcCc
Q 014350 372 VEQLLVSLILDNRIDGHIDQVNRLLERGDR--SA-YLTFLLLKKNA 414 (426)
Q Consensus 372 vE~~l~~lI~~g~i~akID~~~g~v~~~~~--~~-~~~~~~~~~~~ 414 (426)
++..|+++|.+|+++|+||+++|+|++++| +. -.+.++++-+.
T Consensus 334 iDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vikqGd~ 379 (393)
T KOG0687|consen 334 IDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIKQGDL 379 (393)
T ss_pred HHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHhhhHH
Confidence 999999999999999999999999999987 33 24555555443
No 7
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-25 Score=204.57 Aligned_cols=270 Identities=13% Similarity=0.215 Sum_probs=234.3
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
....++|.+|.+.+|.+.+.+.+.++-.... . ...++++.+..+|+.+--+|..-+.+.++.+..+...-.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~------s---tg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAM------S---TGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH------h---cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 5668999999999999999999998876532 1 267899999999999999999999999999988887777
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCC----CCCcccccccC-C
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN----PFDGQEAKPYK-N 291 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~----~~~s~~~~~~~-~ 291 (426)
++.-..+++.+.|++.+..+||++|+..|.++..+|...+...+..+.+|+++|.+++-++.+ .+++++..... .
T Consensus 187 DWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~ 266 (412)
T COG5187 187 DWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGS 266 (412)
T ss_pred CHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccc
Confidence 888889999999999999999999999999999999988888888999999999998755433 47788654432 1
Q ss_pred CcccHHHHHHHHHHhhCCHH-HHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChH
Q 014350 292 DPEILAMTNLIAAYQRNEII-EFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEK 370 (426)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~-~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~ 370 (426)
...+..+..++.+...+|+. -|...+.-+...+..|.|+..|++.+.+.+|.+++-|++++|+.++++.||+.||+|++
T Consensus 267 ~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFgVSV~ 346 (412)
T COG5187 267 SEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFGVSVE 346 (412)
T ss_pred hhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCccHH
Confidence 23455667888899999999 56778888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHcCceeEEEecCCCEEEEecCch---hhHHHHHhcCce
Q 014350 371 DVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA---YLTFLLLKKNAY 415 (426)
Q Consensus 371 evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~---~~~~~~~~~~~~ 415 (426)
-++.-|.++|.+|++++.||+++|+|.+++|.. -.+.++++-++-
T Consensus 347 yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVkqGd~l 394 (412)
T COG5187 347 YVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVKQGDDL 394 (412)
T ss_pred HHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHhcchHH
Confidence 999999999999999999999999999998743 255566555443
No 8
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3e-25 Score=213.02 Aligned_cols=254 Identities=16% Similarity=0.246 Sum_probs=213.5
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI- 215 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~- 215 (426)
|....|+.+|.++|+++.|.+.+...+.+|+.. ...+.+.+.-|++..-.+||.++-.+..+|.....+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 445699999999999999999999999999742 6789999999999999999999999988886553221
Q ss_pred -CChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH-HhhhhhhcchhHHHHHHHHHHHHHhhCCC----CCCCCccccccc
Q 014350 216 -PHPRIMGIIRECGGKMHMAERQWADAATDFFEA-FKNYDEAGNQRRIQCLKYLVLANMLMESE----VNPFDGQEAKPY 289 (426)
Q Consensus 216 -~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea-~~~~~~~~~~~~~~~lky~~L~~lL~~~~----~~~~~s~~~~~~ 289 (426)
..+.+.+++++..|+.++..++|+.|.++|..+ +...+-.+-....++.-|..||+|.+-++ .+...+..+..+
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~f 301 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLF 301 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhH
Confidence 123445679999999999999999999999998 22222111123456778999999976432 123445545555
Q ss_pred CCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCCh
Q 014350 290 KNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPE 369 (426)
Q Consensus 290 ~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~ 369 (426)
. .-.|.+++++..|+++.+..+.++|.+.++.+..|++++.|++.|+..||.++++++..||+++.++.||..|+.++
T Consensus 302 l--el~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~sv 379 (466)
T KOG0686|consen 302 L--ELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTSV 379 (466)
T ss_pred H--hcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhcccH
Confidence 4 23467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 370 KDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..+|+.|.++|.+|+|.||||+.+|+|.+.+.
T Consensus 380 ~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~ 411 (466)
T KOG0686|consen 380 AILESELLELILEGKISGRIDSHNKILYARDA 411 (466)
T ss_pred HHHHHHHHHHHHccchheeeccccceeeeccc
Confidence 99999999999999999999999999999865
No 9
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=9.8e-21 Score=176.68 Aligned_cols=280 Identities=19% Similarity=0.270 Sum_probs=211.8
Q ss_pred ChhHHHHHHHHHHHHHHhh--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~--~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+.+...++++-+++.++.- .-+.=.+.+..+||.+|+..++|..|+..|..+...+-.- .. | -..++..++-.
T Consensus 76 ~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~-~~-d---~~~kl~l~iri 150 (399)
T KOG1497|consen 76 EDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQK-AY-D---VEQKLLLCIRI 150 (399)
T ss_pred CHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchh-hh-h---hHHHHHHHHHH
Confidence 3578888888888877652 1222233566799999999999999999999887776110 01 1 26678888888
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~ 268 (426)
.|+|+..+|...|..+..++--......++.++-.++.|.+++....|+|.+|+..|++.-. +...+...+.++|+.++
T Consensus 151 arlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~-~ki~~e~~~~~aL~~a~ 229 (399)
T KOG1497|consen 151 ARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ-RKIVDESERLEALKKAL 229 (399)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHhH
Confidence 99999999999999998877333333367899999999999999999999999999998732 33344458889999999
Q ss_pred HHHHhhCCCCCCCCcccccc-cCCCc---ccHHHHH-----HHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHH
Q 014350 269 LANMLMESEVNPFDGQEAKP-YKNDP---EILAMTN-----LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (426)
Q Consensus 269 L~~lL~~~~~~~~~s~~~~~-~~~~~---~~~~l~~-----L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 339 (426)
.|.+|+... |-.++.... |+ +| .++.+-- +-+-....++..|...|..|+..-..|. ...+-+
T Consensus 230 ~CtlLA~~g--pqrsr~Latlfk-der~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dg-----ssil~r 301 (399)
T KOG1497|consen 230 QCTLLASAG--PQRSRMLATLFK-DERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDG-----SSILDR 301 (399)
T ss_pred hheeecCCC--hHHHHHHHHHhc-CcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCc-----chhhhh
Confidence 999998432 322221111 22 22 2333322 2233456778888888887765443443 346778
Q ss_pred HHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchh
Q 014350 340 NVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAY 404 (426)
Q Consensus 340 ~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~ 404 (426)
.+.+|||...++-|..||++.++.+|++|++.+|+..++||..|+++|.|||.+|+|+|.+..++
T Consensus 302 a~~EhNlls~Skly~nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l 366 (399)
T KOG1497|consen 302 AVIEHNLLSASKLYNNISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREEL 366 (399)
T ss_pred HHHHHhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999985443
No 10
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.4e-20 Score=171.85 Aligned_cols=272 Identities=19% Similarity=0.229 Sum_probs=206.5
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH---HHHhhcCHHHHHHHHHHHHhhhc
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ---MYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r---l~~~~~d~~kak~~l~~a~~i~~ 213 (426)
...+++|++.+++|+|..|..+|.-.+..+..++ ....+.+|.-++.|+- +-.++.|+.|.+++++..
T Consensus 130 ~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d----~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~----- 200 (432)
T KOG2758|consen 130 ETLYKYAKFQYECGNYSGASDYLYFYRALVSDPD----RNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSK----- 200 (432)
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcc----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccc-----
Confidence 4468999999999999999999999999998653 2123556777777654 345556666666655432
Q ss_pred cCCC--hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh---hhhhcchhHHHHHHHHHHHHHhhCCC-CCC------C
Q 014350 214 AIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN---YDEAGNQRRIQCLKYLVLANMLMESE-VNP------F 281 (426)
Q Consensus 214 ~~~~--p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~---~~~~~~~~~~~~lky~~L~~lL~~~~-~~~------~ 281 (426)
.+.. ..++.+.|...+-++. --|+-+++....+.|-. |-++....++++++|+..+.+.+.+. .+. .
T Consensus 201 ~f~~~~~~l~qRtWLiHWslfv-~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkV 279 (432)
T KOG2758|consen 201 SFSTSAQQLQQRTWLIHWSLFV-FFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKV 279 (432)
T ss_pred ccccHHHHHHHHHHHHHHHHHh-hccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHH
Confidence 1112 2455666654443322 12444556666666542 33455567789999999988866332 221 2
Q ss_pred CcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 014350 282 DGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361 (426)
Q Consensus 282 ~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~i 361 (426)
-+++...|+ ||..+.+..| |.+.|+...+..+.+++.++.+|+|+....+++.+..|....-.+++.+++|+++-+
T Consensus 280 IqqE~ysYk-DPiteFl~cl---yvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRIHqcIti~mL 355 (432)
T KOG2758|consen 280 IQQESYSYK-DPITEFLECL---YVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRIHQCITIDML 355 (432)
T ss_pred HHHhccccC-CcHHHHHHHH---hhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHheeHHHH
Confidence 355666676 6877766554 789999999999999999999999999999999999998888888888899999999
Q ss_pred HhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC--chhhHHHHHhcCceeehhhhh
Q 014350 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR--SAYLTFLLLKKNAYLTCSYLV 422 (426)
Q Consensus 362 A~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 422 (426)
|.+|+++++++|++++++|++.+|+|+||...|.|++..+ .+++|.|.++|+....--.|+
T Consensus 356 A~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s~~qQ~ie~tksLS~rsq~la 418 (432)
T KOG2758|consen 356 ADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVSPHQQLIEKTKSLSFRSQNLA 418 (432)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCCHHHHHHHhccccchhHHHHH
Confidence 9999999999999999999999999999999999999876 666999999999887655554
No 11
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.7e-19 Score=165.29 Aligned_cols=261 Identities=14% Similarity=0.186 Sum_probs=205.9
Q ss_pred HHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC--ChhHHH
Q 014350 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMG 222 (426)
Q Consensus 145 ~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~--~p~~~~ 222 (426)
+..+.+|.++|.+++.++...+... +++ ...+-+...+.|.++..||...++..++..++..+... +|.+++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~---~e~---~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY---KEP---DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh---ccc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 4455678899999999999887643 221 34677778888999999999999999999988777655 467999
Q ss_pred HHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhh---cchhHHHHHHHHHHHHHhhCCCCCCCCcccccccC---CCcccH
Q 014350 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEA---GNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYK---NDPEIL 296 (426)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~---~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~---~~~~~~ 296 (426)
.++..+..||-.-+||...+++-+.- -++... ...++.+...-++++++|+.+ +.+|+...++|.. .+...+
T Consensus 158 ~fY~lssqYyk~~~d~a~yYr~~L~Y-L~~~d~~~l~~se~~~lA~~L~~aALLGe~-iyNfGELL~HPilesL~gT~~e 235 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYYRHALLY-LGCSDIDDLSESEKQDLAFDLSLAALLGEN-IYNFGELLAHPILESLKGTNRE 235 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHH-hccccccccCHHHHHHHHHHHHHHHHhccc-cccHHHHHhhHHHHHhcCCcHH
Confidence 99999999999999988755544332 222222 223666777789999999754 4446555555532 246789
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhc--cc--cccccchhHHhHhCCChHHH
Q 014350 297 AMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KP--YTRIRIPFISKELNVPEKDV 372 (426)
Q Consensus 297 ~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~--~p--Ys~I~l~~iA~~l~l~~~ev 372 (426)
|+.+++.||+.||+..|++....+ ..-|.+++|...|.++++..+++.++ +| -++||++.||+++.+|.++|
T Consensus 236 WL~dll~Afn~Gdl~~f~~l~~~~----~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eV 311 (380)
T KOG2908|consen 236 WLKDLLIAFNSGDLKRFESLKGVW----GKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEV 311 (380)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHh----ccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHH
Confidence 999999999999999999876654 45789999999999999999998776 44 67999999999999999999
Q ss_pred HHHHHHhHHcCceeEEEecCCCEEEEecCch--h-hHHHHHhcCceee
Q 014350 373 EQLLVSLILDNRIDGHIDQVNRLLERGDRSA--Y-LTFLLLKKNAYLT 417 (426)
Q Consensus 373 E~~l~~lI~~g~i~akID~~~g~v~~~~~~~--~-~~~~~~~~~~~~~ 417 (426)
|.++++.++.|.|.|.||+++|+|.+..-++ . .+.|..-|.++-+
T Consensus 312 E~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~rl~~ 359 (380)
T KOG2908|consen 312 ELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKDRLDE 359 (380)
T ss_pred HHHHHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHHHHHH
Confidence 9999999999999999999999999987433 2 6666666655543
No 12
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.79 E-value=1.3e-18 Score=142.56 Aligned_cols=105 Identities=33% Similarity=0.626 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHH
Q 014350 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQL 375 (426)
Q Consensus 296 ~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~ 375 (426)
||+.+|+++|.++|+..|.+.++.+...+..|+++..|++.+.+.++.+++.+++.+|++|++++||+.++++.+++|.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~ 80 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI 80 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence 68899999999999999999999997778889999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHcCceeEEEecCCCEEEEec
Q 014350 376 LVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 376 l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
+++||.+|.|+|+||+++|+|+|..
T Consensus 81 l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 81 LIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred HHHHHHCCCEEEEEECCCCEEEecC
Confidence 9999999999999999999999863
No 13
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.7e-17 Score=155.16 Aligned_cols=247 Identities=19% Similarity=0.265 Sum_probs=180.7
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
++..=+...|+..|+...--.++..+..--+- +-++-. ...++. +..|.|+.-+-|.+|..+..++ ..|
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL--rhd~e~-qavLiN---~LLr~yL~n~lydqa~~lvsK~-----~~p 238 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATL--RHDEEG-QAVLIN---LLLRNYLHNKLYDQADKLVSKS-----VYP 238 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh--cCcchh-HHHHHH---HHHHHHhhhHHHHHHHHHhhcc-----cCc
Confidence 55556666777778766655555444432111 101110 011222 2235566666566665543322 112
Q ss_pred C---hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh-hhcchhHHHHHHHHHHHHHhhCCCCC--CCCcccccccC
Q 014350 217 H---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD-EAGNQRRIQCLKYLVLANMLMESEVN--PFDGQEAKPYK 290 (426)
Q Consensus 217 ~---p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~-~~~~~~~~~~lky~~L~~lL~~~~~~--~~~s~~~~~~~ 290 (426)
+ ....+++..|.|++.+.+.+|.+|.++|..+....+ ........++-+.+++..+|.++..+ .|.++..+
T Consensus 239 e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~--- 315 (493)
T KOG2581|consen 239 EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR--- 315 (493)
T ss_pred cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---
Confidence 2 346789999999999999999999999999987544 33334677888999999998876322 35444322
Q ss_pred CCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCC-Ch
Q 014350 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PE 369 (426)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l-~~ 369 (426)
..+.++..|.+|...+|+..|.+.+++|++.|..|..+. -+-.|+.+|+.-+|++|.-.||||++.+||+.|++ |+
T Consensus 316 --ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~-LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Se 392 (493)
T KOG2581|consen 316 --KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT-LIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSE 392 (493)
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch-HHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCc
Confidence 356778899999999999999999999999999998764 35578999999999999999999999999999999 56
Q ss_pred HHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 370 KDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
+++|.++++.|+||.|+|+||+.+|++...+
T Consensus 393 ed~EyiVakAIRDGvIea~Id~~~g~m~skE 423 (493)
T KOG2581|consen 393 EDAEYIVAKAIRDGVIEAKIDHEDGFMQSKE 423 (493)
T ss_pred hhHHHHHHHHHHhccceeeeccccCceehhh
Confidence 6799999999999999999999999887654
No 14
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.52 E-value=1.8e-12 Score=123.78 Aligned_cols=217 Identities=15% Similarity=0.236 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-hh--hccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhc
Q 014350 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKAL-AI--KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~~d~~kak~~l~~a~-~i--~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (426)
.+.-++..-..+++..++|.-+..+++.-. .+ .++-.+|+..-.+..++|.++...++|+.|.-.|+.+..++...-
T Consensus 138 qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~v 217 (422)
T KOG2582|consen 138 QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAV 217 (422)
T ss_pred chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHH
Confidence 466677777788899988876554443210 01 123345777767788999999999999999988887776665544
Q ss_pred chhHHHHH-HHHHHHHHhhCCC--CCCCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHH
Q 014350 257 NQRRIQCL-KYLVLANMLMESE--VNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY 333 (426)
Q Consensus 257 ~~~~~~~l-ky~~L~~lL~~~~--~~~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~ 333 (426)
+....++. +|++++-|+.+.. ++.-.++.+.++.. |-.+++.+++++|.++.-.+...++.++.+.|.+|.... .
T Consensus 218 s~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K-~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~-l 295 (422)
T KOG2582|consen 218 SHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFK-PMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTG-L 295 (422)
T ss_pred HHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcc-cCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHH-H
Confidence 44444554 5777777777653 22233555666542 556789999999999999999999999999999998764 4
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhHHhHhCC-ChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l-~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+......+-.|||.++.+.|++++|++||++..+ +.++||++|.+||.+|+|.++|| |.|.|.+.
T Consensus 296 ~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n 361 (422)
T KOG2582|consen 296 AKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDN 361 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecC
Confidence 5677788889999999999999999999998888 68999999999999999999999 99999865
No 15
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.44 E-value=3e-13 Score=107.35 Aligned_cols=71 Identities=32% Similarity=0.509 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 333 ~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
|++.+.++++.+++.+++++|++|++++||+.+++|.+++|.+|++||.+|.|+|+||+.+|+|.+.+...
T Consensus 2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~ 72 (88)
T smart00088 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDP 72 (88)
T ss_pred hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCch
Confidence 67899999999999999999999999999999999999999999999999999999999999999988644
No 16
>smart00753 PAM PCI/PINT associated module.
Probab=99.44 E-value=3e-13 Score=107.35 Aligned_cols=71 Identities=32% Similarity=0.509 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 333 ~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
|++.+.++++.+++.+++++|++|++++||+.+++|.+++|.+|++||.+|.|+|+||+.+|+|.+.+...
T Consensus 2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~ 72 (88)
T smart00753 2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDP 72 (88)
T ss_pred hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCch
Confidence 67899999999999999999999999999999999999999999999999999999999999999988644
No 17
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.33 E-value=2.4e-11 Score=109.14 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=115.7
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|++|++.||+++|.+.+.+.+..|..+ ..++++.+..+|+++..+|+..+...+.+++.......+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSP---------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 35799999999999999999999999998642 678999999999999999999999999999888877667
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh---hcchhHHHHHHHHHHHHHhhC
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYLVLANMLME 275 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~---~~~~~~~~~lky~~L~~lL~~ 275 (426)
+....+++.+.|++++..++|++|++.|.++..+|.. .+.....++..|.+||++++-
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~ 169 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATL 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhC
Confidence 8889999999999999999999999999999888764 444477789999999999873
No 18
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=98.87 E-value=8.6e-07 Score=85.80 Aligned_cols=249 Identities=16% Similarity=0.207 Sum_probs=158.5
Q ss_pred hccHHHHHHHHHHHHhhcccCCCC-cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh-ccCCC-hhHH-HHH
Q 014350 149 MGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK-SAIPH-PRIM-GII 224 (426)
Q Consensus 149 ~g~~~~A~~ll~el~~~~~~~~~~-~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~-~~~~~-p~~~-~~i 224 (426)
....+++..++...-..|-..-+. ....++.-..-+.-....+|++++++.-++..++..+..+ ..+.. +.-+ -.+
T Consensus 143 ~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f 222 (413)
T COG5600 143 QDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVF 222 (413)
T ss_pred HhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeeh
Confidence 345577888888888777643221 0111122222333444578999999999988777554321 11211 1112 246
Q ss_pred HHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccHHHHHHHHH
Q 014350 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAA 304 (426)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~~l~~L~~a 304 (426)
..+-|++|++..++.+|.-+|-++|.............++-|++-.++|.+.-. |... ...++ +....+.-|+++
T Consensus 223 ~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~-Ptk~-~L~r~---~~~s~~~~Lvka 297 (413)
T COG5600 223 HYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFP-PTKD-LLERF---KRCSVYSPLVKA 297 (413)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCC-CchH-HHHhc---cccchhHHHHHH
Confidence 689999999999999999999999876544333344556778777777765433 2111 12222 225567788999
Q ss_pred HhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHH-hc---ccccc--ccchhHHhHhCC-C----hHHHH
Q 014350 305 YQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLK-LI---KPYTR--IRIPFISKELNV-P----EKDVE 373 (426)
Q Consensus 305 f~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~-i~---~pYs~--I~l~~iA~~l~l-~----~~evE 373 (426)
...|++..|...+++++..|.+-...- -+...++-|--+|+.+ .. --=++ .++-.++..+.. + .++||
T Consensus 298 vrsGni~~~~~~l~~ner~~~~~~l~l-tl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VE 376 (413)
T COG5600 298 VRSGNIEDFDLALSRNERKFAKRGLYL-TLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVE 376 (413)
T ss_pred HHcCCHHHHHHHHHHhHHHHHHcchHH-HHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCcccChHHHH
Confidence 999999999999999886665443321 1222233334444433 11 11134 445555666554 2 78999
Q ss_pred HHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 374 QLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 374 ~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
..++.||..|.+.|.|-+...+|++.++.+
T Consensus 377 ciL~tlI~~G~lrgYis~s~~~vV~sk~~p 406 (413)
T COG5600 377 CILVTLIGLGLLRGYISHSRRTVVFSKKDP 406 (413)
T ss_pred HHHHHHHhhhhhhheecccceEEEEecCCC
Confidence 999999999999999999999999987654
No 19
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.2e-06 Score=87.37 Aligned_cols=208 Identities=15% Similarity=0.181 Sum_probs=130.1
Q ss_pred hhcCHHHHHHHHHHHHhhhccC--CChhHHH---HHHHhhHHHhHHhhcHHHHHHHHHHHHhhh---------------h
Q 014350 194 ETKNNKKLKQLYQKALAIKSAI--PHPRIMG---IIRECGGKMHMAERQWADAATDFFEAFKNY---------------D 253 (426)
Q Consensus 194 ~~~d~~kak~~l~~a~~i~~~~--~~p~~~~---~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~---------------~ 253 (426)
-..||.+|+.++-.+-- ...+ .+|..|. +....-|+-.+..|..++|..++.+.+.+= .
T Consensus 498 L~d~f~~ARDlLLMSHl-QdnI~h~D~stQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~h 576 (843)
T KOG1076|consen 498 LHDNFYTARDLLLMSHL-QDNIQHADISTQILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQH 576 (843)
T ss_pred HHHhHHHHHHHHHHHHH-HHHhhccChhHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhh
Confidence 34678999988876621 1112 2344443 344677888888999999999998886431 0
Q ss_pred h----hc-chhH----------HHHH--HHHHHHHHhhCCC----------C----CCCCc----ccccccCCCcc-c-H
Q 014350 254 E----AG-NQRR----------IQCL--KYLVLANMLMESE----------V----NPFDG----QEAKPYKNDPE-I-L 296 (426)
Q Consensus 254 ~----~~-~~~~----------~~~l--ky~~L~~lL~~~~----------~----~~~~s----~~~~~~~~~~~-~-~ 296 (426)
+ .+ ...+ ...+ .|+ .|++|..=+ . .+|.. .+-+.+.+-|+ + +
T Consensus 577 e~t~eQe~~eR~rQlPyHmHINLELlEcVyL-tcaMLlEIP~MAA~~~d~Rrr~iSk~frr~Le~serqsf~gPPEn~Re 655 (843)
T KOG1076|consen 577 EKTAEQEKIERRRQLPYHMHINLELLECVYL-TCAMLLEIPYMAAHESDARRRMISKSFRRQLEHSERQSFTGPPENTRE 655 (843)
T ss_pred ccChhhHHHHHhhcCchhhhccHHHHHHHHH-HHHHHHhhhHHhhhhhhhhcccccHHHHHHHHHHhhccccCCchhHHH
Confidence 0 00 0011 1112 244 456554110 0 01211 11122332222 1 1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccc----cccccchhHHhHhCCChHHH
Q 014350 297 AMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKP----YTRIRIPFISKELNVPEKDV 372 (426)
Q Consensus 297 ~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~p----Ys~I~l~~iA~~l~l~~~ev 372 (426)
-+-.-.+|...||...+.+.+-........=|.-..-.+-|.++|.+-.|+-|+-. |++||++.+|++|++|+..|
T Consensus 656 hVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp~~~V 735 (843)
T KOG1076|consen 656 HVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLPEPKV 735 (843)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCCchhH
Confidence 23455778899999999985544333222112222224567888888888877754 77999999999999999999
Q ss_pred HHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 373 EQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 373 E~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
-..|++||.+..|.|++|+|.+||+|.+.+.
T Consensus 736 hsIiSkmiineEl~AslDqpt~~iv~hrvE~ 766 (843)
T KOG1076|consen 736 HSIISKMIINEELHASLDQPTQCIVMHRVEP 766 (843)
T ss_pred HHHHHHHHHHHHhhhccCCCcceEEEeeccc
Confidence 9999999999999999999999999998533
No 20
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=98.79 E-value=1.7e-06 Score=82.41 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHH
Q 014350 239 ADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILK 318 (426)
Q Consensus 239 ~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~ 318 (426)
..+.+-+.+-..+|++..-..+..-..-.+.-++-+++ +-.||-....+-...-+-..+.+|+..|.++.+..|.+..+
T Consensus 182 ~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~-~F~fD~Ll~L~pV~qLE~d~i~qLL~IF~s~~L~aYveF~~ 260 (378)
T KOG2753|consen 182 DESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPK-IFLFDHLLTLPPVKQLEGDLIHQLLKIFVSGKLDAYVEFVA 260 (378)
T ss_pred hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCc-eeccchhccCchHHHhccchHHHHHHHHHhcchHHHHHHHH
Confidence 34455555555666554423444444445555553322 11233222211000011123789999999999999999888
Q ss_pred HhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 319 SNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 319 ~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
.+...+..-.+.. +....++|..-++.+.++=..|+++.|++.|++.++|||-++.+.|..|.+.|||||.+.+|++
T Consensus 261 ~N~~Fvqs~gl~~---E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viV 337 (378)
T KOG2753|consen 261 ANSGFVQSQGLVH---EQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIV 337 (378)
T ss_pred hChHHHHHhcccH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEe
Confidence 8776555444443 3788999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecC
Q 014350 399 GDR 401 (426)
Q Consensus 399 ~~~ 401 (426)
.+.
T Consensus 338 s~~ 340 (378)
T KOG2753|consen 338 SSS 340 (378)
T ss_pred ehh
Confidence 754
No 21
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=2.5e-06 Score=82.51 Aligned_cols=237 Identities=11% Similarity=0.128 Sum_probs=146.1
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh
Q 014350 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (426)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 130 (426)
+.....+.+.+..|...|+|+++.+.|.+..............++........+... + .+...+.++.+.+.....+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--PDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--HHHHHHHHHHHHHHHHhcC
Confidence 335667788888899999999999999888777644455667777777777777653 2 5566777777777666555
Q ss_pred hhhhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014350 131 NERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~-g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~ 209 (426)
......++..++|++|++. |++++|.+.+++........+ . .....+++..-+.++...++|.+|...+++.-
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---S---PHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---C---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5556668889999999999 999999999999888765431 1 24455666666677777777777777776653
Q ss_pred hhh--ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCccccc
Q 014350 210 AIK--SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAK 287 (426)
Q Consensus 210 ~i~--~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~ 287 (426)
... +....+.+ ..+....++.++..+|+-.|.+.|-.. .. .+|
T Consensus 183 ~~~l~~~l~~~~~-~~~~l~a~l~~L~~~D~v~A~~~~~~~------------------------~~---~~~------- 227 (282)
T PF14938_consen 183 KKCLENNLLKYSA-KEYFLKAILCHLAMGDYVAARKALERY------------------------CS---QDP------- 227 (282)
T ss_dssp HTCCCHCTTGHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHH------------------------GT---TST-------
T ss_pred HHhhcccccchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------Hh---hCC-------
Confidence 211 11111110 112233334444433333222111110 00 011
Q ss_pred ccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHH
Q 014350 288 PYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIR 331 (426)
Q Consensus 288 ~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 331 (426)
.|...++...+..|++||.++|...|...+..|...-+.|++..
T Consensus 228 ~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 228 SFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 12333567788899999999999999999999988778888753
No 22
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=9.2e-07 Score=87.29 Aligned_cols=242 Identities=18% Similarity=0.225 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhhcccCCCC-cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhH-HHHHHHhhH
Q 014350 153 GRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI-MGIIRECGG 229 (426)
Q Consensus 153 ~~A~~ll~el~~~~~~~~~~-~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p~~-~~~i~~~~g 229 (426)
++|...+...-..|-...+. ...+++.-...+--..-++|++.+.+.-++...+......+...+ +.- +-.+..+-|
T Consensus 133 e~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylG 212 (394)
T KOG2688|consen 133 EAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLG 212 (394)
T ss_pred HHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeee
Confidence 45555555555554432111 111223334455555568899999988888876655433211111 111 113456778
Q ss_pred HHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCC-CCCCCCcccccccCCCcccHHHHHHHHHHhhC
Q 014350 230 KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES-EVNPFDGQEAKPYKNDPEILAMTNLIAAYQRN 308 (426)
Q Consensus 230 ~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~-~~~~~~s~~~~~~~~~~~~~~l~~L~~af~~~ 308 (426)
++++.+.||.+|..++-++|......-......++.|++-+.++.+. +..++ ...| ....+..|+++...|
T Consensus 213 r~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~llg~~Pt~~l----L~~~----~~~~~~~lv~aVr~G 284 (394)
T KOG2688|consen 213 RYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGLLLGRIPTKEL----LDFY----TLDKYSPLVQAVRSG 284 (394)
T ss_pred eehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHHHhccCcchhh----HhHh----hHHhHHHHHHHHHhc
Confidence 99999999999999999999865432222445678899998887655 21111 1112 145677899999999
Q ss_pred CHHHHHHHHHHhHHHhcCChhHHHH--HH-HHHHHHHHHHHHHhccccccccchhHHhHhCC------ChHHHHHHHHHh
Q 014350 309 EIIEFEKILKSNRKTIMDDPFIRNY--IE-DLLKNVRTQVLLKLIKPYTRIRIPFISKELNV------PEKDVEQLLVSL 379 (426)
Q Consensus 309 dl~~f~~~l~~~~~~l~~D~~l~~~--~~-~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l------~~~evE~~l~~l 379 (426)
++..|...++.++..|..-..+--- .+ -.++++..+.+. +.--=++++++++-..+.. +.+++|..|+.+
T Consensus 285 nl~~f~~al~~~E~~f~~~gi~l~l~~l~lv~yrnL~kkv~~-~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~l 363 (394)
T KOG2688|consen 285 NLRLFDLALADNERFFIRSGIYLTLEKLPLVVYRNLFKKVIQ-LWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANL 363 (394)
T ss_pred cHHHHHHHHhhhHHHHHHhccHHHhhhhhHHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhh
Confidence 9999999999988665544332100 11 123333322222 2211268888888777665 369999999999
Q ss_pred HHcCceeEEEecCCCEEEEecCch
Q 014350 380 ILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 380 I~~g~i~akID~~~g~v~~~~~~~ 403 (426)
|..|+|+|.|++....+++.+..+
T Consensus 364 I~~G~ikgYish~~~~~V~sK~~p 387 (394)
T KOG2688|consen 364 IDLGRIKGYISHQLQTLVFSKKDP 387 (394)
T ss_pred hhhccccchhchhhheEEEecCCC
Confidence 999999999999999999877543
No 23
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.46 E-value=6.2e-05 Score=72.82 Aligned_cols=196 Identities=13% Similarity=0.157 Sum_probs=138.8
Q ss_pred hhhHhHHHHhhcc-cC-CCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh
Q 014350 14 TVSRVLCSILEKG-LV-ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (426)
Q Consensus 14 ~~~~~~~~~~ak~-~~-~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~ 89 (426)
.-++..+|-.|=. ++ .+++++|.+.|.+..+... .+.....+++.+.+.+|.+. +++++.++|.+..........
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 3344445544432 22 3468899999988866432 23345688899999998777 999999999999998745555
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 90 RNYSEKCINNIMDFVSGS-ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 90 k~~~~k~v~~il~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
....++....+.+.+... ++ .+...+.|+.+.+..+.......-..+..++|.++...|+|++|.++++++-..+..
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d--~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGD--YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 677899999999999875 44 788999999999987764433444478889999999999999999999999887643
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 169 EDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 169 ~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
.... ....-+.++..+-.++..+|+..|+..++......+.+.+
T Consensus 188 ~~l~-----~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 188 NNLL-----KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HCTT-----GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred cccc-----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2111 1223345556666788899999999999887665544433
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.44 E-value=0.00039 Score=69.83 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=133.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.++++ ..++..++.++...|+++++.+.+..+... +.............+...+...
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLLSR--PDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHC
Confidence 4568999999999999987643 467788999999999999999999988764 2222222223444444444432
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+.....++..++. ..........++.++...|++++|.+.+..+....... . ......++..
T Consensus 121 g~--~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~---~~~~~~~~~~ 185 (389)
T PRK11788 121 GL--LDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS----L---RVEIAHFYCE 185 (389)
T ss_pred CC--HHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc----c---hHHHHHHHHH
Confidence 22 33444444443331 11223445689999999999999999999987653211 1 1223445556
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+.++...+++.+|...++++....+.. .......|.++...+++.+|...|.++..
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677889999999999999886543221 12344567788889999999999998864
No 25
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=4.2e-05 Score=79.08 Aligned_cols=213 Identities=16% Similarity=0.208 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS--AVTRNYSEKCINNIMD 102 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~--~~~k~~~~k~v~~il~ 102 (426)
.+++.+|+..|++.+.... ++..-..-.+.+|+.+|.+.|+++++.+++..-+.+.+. ..+-..++..+..+..
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 4679999999999987644 344557889999999999999999999999999888733 1356777777777777
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHhhhhhh--hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhh
Q 014350 103 FVSGSASQNFSLLREFYQTTLKALEEAKNER--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (426)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~k--l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~ 180 (426)
.+..... .+....++..+++.+..+.... ....+..+||.+|...|+|++|.+++.+.........|-. ..
T Consensus 334 ~~~~~~~--~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~-----~~ 406 (508)
T KOG1840|consen 334 ILQSMNE--YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK-----DY 406 (508)
T ss_pred HHHHhcc--hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc-----Ch
Confidence 7665343 6788888888888877543222 4447888999999999999999999888877664433211 11
Q ss_pred HHHHHHHH-HHHHHhhcCHHHHHHHHHHHHhhhccC--CChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 181 LLEVYAIE-IQMYTETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 181 l~e~~l~e-~rl~~~~~d~~kak~~l~~a~~i~~~~--~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
-+...+.+ ...|...+++..|-.++..+..+.... .+|.+...+.-.++ .|...|+|..|..+--.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHHHHHHH
Confidence 22222222 235678888999999999888777322 24666554443332 4446788888776554443
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.35 E-value=0.00014 Score=73.06 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (426)
..+++++|++.+..+++............+..++.+|...|+++++.+.+.....
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 3456777777777766643322222345666667777777777777777666654
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=0.00036 Score=66.92 Aligned_cols=202 Identities=14% Similarity=0.181 Sum_probs=139.5
Q ss_pred HHhhcc-cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 014350 21 SILEKG-LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (426)
Q Consensus 21 ~~~ak~-~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (426)
|+++=. +.+..|++|++.|..+++.+++ ++.+=-.++.++++.|..|.++..=+.|... |..+-..-.-.+.+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPE----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCch----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 444333 3456799999999999886653 5777788999999999999999988888766 55555555555555
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH-HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
+..-+... + +++.+-+.+..-.++.-+. .....|..||-...+|++|.+.-.++.+.... ..+
T Consensus 113 L~~Dym~a-G--------l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-------~~~ 176 (389)
T COG2956 113 LGRDYMAA-G--------LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ-------TYR 176 (389)
T ss_pred HHHHHHHh-h--------hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-------cch
Confidence 55544331 1 2222222221111222222 23458899999999999999999999998532 224
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.++..++.+-+.-+....|..+|+..+.+|...+.+.. .+ -...|.+++..|+|..|-+.+-.+.+
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----RA--si~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV----RA--SIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce----eh--hhhhhHHHHhccchHHHHHHHHHHHH
Confidence 67788888888888899999999999999876543322 11 12457888899999999887776643
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.11 E-value=0.0013 Score=59.61 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.++++ ..++..++.++...|+++++.+++...+... +.... ....+...+...
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~~~~~~~~~ 112 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD-----VLNNYGTFLCQQ 112 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH-----HHHHHHHHHHHc
Confidence 3567899999999888776543 4567778899999999999999988887765 33211 122222222221
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+.....++.+++. ............+|..+...|++++|...+.+....... + .+.+..
T Consensus 113 g~--~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~ 174 (234)
T TIGR02521 113 GK--YEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-----R-------PESLLE 174 (234)
T ss_pred cc--HHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----C-------hHHHHH
Confidence 11 33334444433321 011112234456788888888888888888887766321 1 123344
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f 245 (426)
..+++...|++.+|...++++....+ .++. .....+.++...+++..|....
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYN--QTAE----SLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHHhhHHHHHHHH
Confidence 45677788888888888887755421 1121 1123445555667777766543
No 29
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.027 Score=60.08 Aligned_cols=219 Identities=15% Similarity=0.165 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH---HhhhccCCChhHHHHHHHhhHHHhHHhhcHH---HHHHHHHHHHhhhhh
Q 014350 181 LLEVYAIEIQMYTETKNNKKLKQLYQKA---LAIKSAIPHPRIMGIIRECGGKMHMAERQWA---DAATDFFEAFKNYDE 254 (426)
Q Consensus 181 l~e~~l~e~rl~~~~~d~~kak~~l~~a---~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~---~A~~~f~ea~~~~~~ 254 (426)
-++.-+.|..+...++=|..|-..++.. .+++...+-|..++-||.--..+++..||+. .|-..||..+.++..
T Consensus 231 ~LDtRf~QLdvAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K 310 (988)
T KOG2072|consen 231 YLDTRFQQLDVAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNK 310 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcc
Confidence 3566666666677777777777666654 4555556678989888877778888888763 333444444433321
Q ss_pred -hcchhHHHHHHHHHHHHHhhCCC------CCCC---Ccc----c--ccccCCCcccH----HHHHHHH----HHhhCCH
Q 014350 255 -AGNQRRIQCLKYLVLANMLMESE------VNPF---DGQ----E--AKPYKNDPEIL----AMTNLIA----AYQRNEI 310 (426)
Q Consensus 255 -~~~~~~~~~lky~~L~~lL~~~~------~~~~---~s~----~--~~~~~~~~~~~----~l~~L~~----af~~~dl 310 (426)
....+.......++|++| |-.. ..++ ++. . +....+.|.-| .+++++. .+...++
T Consensus 311 ~~Tqde~q~~as~VlLaaL-SIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~PTR~~ll~e~v~~gV~~~v~qe~ 389 (988)
T KOG2072|consen 311 NLTQDELQRMASRVLLAAL-SIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAPPTRKGLLKEAVREGVLSKVDQEV 389 (988)
T ss_pred cccHHHHHHHHHHHHHHHh-cCCCCCcccccccccccccchhhHHHHHHHHhCCCCCccHHHHHHHHHHhccHhhhhHHH
Confidence 112233444455666665 3110 0011 000 0 00001111111 1222221 1112222
Q ss_pred HHHHHHH-------------HHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhC-CChHHHHHHH
Q 014350 311 IEFEKIL-------------KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPEKDVEQLL 376 (426)
Q Consensus 311 ~~f~~~l-------------~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~-l~~~evE~~l 376 (426)
.....+| +..-+.+...|...+++..|.+.+..+.+.+++.-|.+|++++|-++.- ++.-++|+.+
T Consensus 390 kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~ 469 (988)
T KOG2072|consen 390 KDLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLL 469 (988)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHH
Confidence 2222222 1122234455666788999999999999999999999999999988866 4889999999
Q ss_pred HHhHHcCceeEEEecCCCEEEEec
Q 014350 377 VSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 377 ~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
++....+-+..+||+..++|.|..
T Consensus 470 v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 470 VEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred HHHHhccceeEEeccccceeeecc
Confidence 999999999999999999999984
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.01 E-value=0.00073 Score=72.64 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
+++++|++.|.+.++..... .....++..++.++...|+++++.+.+...+... |....... .+...+....+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~-----~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI-----KRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH-----HHHHHHHHCCC
Confidence 46899999999999865311 1235678889999999999999999999998875 54332222 11121211122
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
.+.....++.+++. .. -...+...+|.++...|++++|...+++......+ -...+....
T Consensus 381 --~~eA~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------------~~~~~~~la 440 (615)
T TIGR00990 381 --PDKAEEDFDKALKL---NS---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------------FIFSHIQLG 440 (615)
T ss_pred --HHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------------CHHHHHHHH
Confidence 34455555554442 11 11244568899999999999999999999877321 123445556
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.++...|++.+|...++++....+. +| ..+...|.++...++|.+|...|..+...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPE--AP----DVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 7888999999999999988654321 12 23445678888999999999999998764
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.01 E-value=0.0011 Score=71.24 Aligned_cols=191 Identities=10% Similarity=0.150 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|+++++.++.. ..++..++.++...|+++++.+.+...+... +.... ....+...+....
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~-----~~~~lg~~~~~~g 413 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD-----IYYHRAQLHFIKG 413 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHcC
Confidence 578999999999999988753 4567889999999999999999999998875 43222 2222222222222
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ .+.....++.+++. ..+ .......+|.++...|++++|...+++....... + .+++...
T Consensus 414 ~--~~~A~~~~~kal~l----~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~-------~~~~~~l 473 (615)
T TIGR00990 414 E--FAQAGKDYQKSIDL----DPD--FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----A-------PDVYNYY 473 (615)
T ss_pred C--HHHHHHHHHHHHHc----Ccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHH
Confidence 2 44555555555442 111 1223458999999999999999999999876431 1 2344445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCC--hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~--p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..++...|++.+|...++++..+.+.... ..+. .+....+.++...++|.+|...|..+..
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~-~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL-PLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 67888999999999999999776543221 1111 1112222333346899999998888765
No 32
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.00 E-value=0.0012 Score=68.52 Aligned_cols=196 Identities=13% Similarity=0.183 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS--AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~--~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 130 (426)
.-..+..|+..|..+|+++++.+.++.-+..... ...-..++.+.+.+...+.... +......+|+.++...+.+-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--KYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhc
Confidence 3456666999999999999999999988777411 1123345555555555555422 35677888888888766542
Q ss_pred hhh--hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 131 NER--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 131 ~~k--l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
-+. -..-+..+||.+|...|+|++|..++...........|... ..+-..+...+-++...+.+..|..++..+
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~----~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH----PEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh----HHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 222 23355679999999999999999888887776655444332 334455556667788889999999999999
Q ss_pred HhhhccCCCh--hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 209 LAIKSAIPHP--RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 209 ~~i~~~~~~p--~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
.++....+.+ ...+.++.-.|..+...|+|.+|...|.++.....+
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 7776544322 245678888888899999999999999999765443
No 33
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.00092 Score=63.21 Aligned_cols=180 Identities=9% Similarity=0.101 Sum_probs=118.8
Q ss_pred hHhHHHHhhcccCC-CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014350 16 SRVLCSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (426)
Q Consensus 16 ~~~~~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (426)
.....|..|....+ +|+++|++.|+++++..|. +.+..++...++..+++.|+++++...++.+++.. |.-++..-+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHH
Confidence 34557777777655 6899999999999988774 46788899999999999999999999999999997 765544433
Q ss_pred HHHHHHH---------HHhcCCC--CCChhHHHHHHHHHHHHHHhhh--------hhhhHH------HHhHHHHHHHHHh
Q 014350 95 KCINNIM---------DFVSGSA--SQNFSLLREFYQTTLKALEEAK--------NERLWF------KTNLKLCKIWFDM 149 (426)
Q Consensus 95 k~v~~il---------~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~--------~~kl~~------r~~~~La~~~~~~ 149 (426)
--+..+. ..+...+ +.+.....+-++...+.++.-. ..|+.. +-.+..|++|+..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR 188 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333222 1111111 1112222333333333333211 112111 3346888999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014350 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (426)
Q Consensus 150 g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~ 206 (426)
|.|..|..-.+.+...-+++ ...-|.+....+.|..+|....|+....
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t---------~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDT---------QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred CchHHHHHHHHHHHHHCCCC---------chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999899888876543 2234555555678888998888887644
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.96 E-value=0.0012 Score=61.70 Aligned_cols=171 Identities=11% Similarity=0.105 Sum_probs=108.0
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh------
Q 014350 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN------ 91 (426)
Q Consensus 19 ~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~------ 91 (426)
..|..|..+ ..+++++|++.|+.+++..+++ .|...+...++.++.+.|+++++.+.+..++... |.-+..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHH
Confidence 345555544 4568999999999999887643 4567888999999999999999999999998876 532221
Q ss_pred -----------------HHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHH
Q 014350 92 -----------------YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGR 154 (426)
Q Consensus 92 -----------------~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~ 154 (426)
..+++++.+-..+...|+. ........ .+.+.. .........+|.+|+..|++.+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~----~~~~~~--~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKK----RMDYLR--NRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHH----HHHHHH--HHHHHHHHHHHHHHHHcCChHH
Confidence 1111111111111111220 00000000 000000 0000123478999999999999
Q ss_pred HHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 155 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 155 A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
|...++++.....+. ....+.+....+.+...|++.+|..+++..
T Consensus 185 A~~~~~~al~~~p~~---------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 185 AINRFETVVENYPDT---------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998886431 223456666678899999999999877655
No 35
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.85 E-value=0.0015 Score=71.87 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=49.9
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+..|+.. .++++++|+..|.+.+...+++ ..+...++.++...|+|+++.+.+......-
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 86 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPND----AEARFLLGKIYLALGDYAAAEKELRKALSLG 86 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555554 4568999999999999887754 4567789999999999999999999987763
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.82 E-value=0.0026 Score=64.68 Aligned_cols=189 Identities=15% Similarity=0.267 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK----CINNIMDF 103 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k----~v~~il~~ 103 (426)
.++++++|++.+.+..+.+|++ ..++..++.+|.+.|+|+++.+.+..+.+.. ..+...... ....++..
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRH----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--VGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777666544 3556667777777788888777777777663 222222221 11111221
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
....++ .+......+.... ..+-...+...+|..+...|+.++|.+.+.+..+... + ..++.
T Consensus 239 ~~~~~~--~~~l~~~w~~lp~------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~------~----~~l~~ 300 (398)
T PRK10747 239 AMADQG--SEGLKRWWKNQSR------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY------D----ERLVL 300 (398)
T ss_pred HHHhcC--HHHHHHHHHhCCH------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------C----HHHHH
Confidence 111111 1122222111111 1111224456788899999999999999988877421 1 11221
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
++ ..+..++..++...+++-.+..+ .+| .+..+-|.+++..++|.+|.++|..+...
T Consensus 301 l~-----~~l~~~~~~~al~~~e~~lk~~P--~~~----~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 301 LI-----PRLKTNNPEQLEKVLRQQIKQHG--DTP----LLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HH-----hhccCCChHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11 12234677777666555433211 123 24566777778888888888888887543
No 37
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.82 E-value=0.0032 Score=57.83 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=100.7
Q ss_pred hHHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014350 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (426)
Q Consensus 18 ~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (426)
-..|..|... .++|+++|++.|+.++...|. +.+...+.-.++..+++.|+|+++...+..++... |.-+...-+--
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHH
Confidence 4567777765 456899999999999887763 45678999999999999999999999999998887 76433222211
Q ss_pred HHHHHHHhcCCC-----CCChhHHHHHHHHHHHHHHhhh--------hhhh------HHHHhHHHHHHHHHhccHHHHHH
Q 014350 97 INNIMDFVSGSA-----SQNFSLLREFYQTTLKALEEAK--------NERL------WFKTNLKLCKIWFDMGEYGRMSK 157 (426)
Q Consensus 97 v~~il~~~~~~~-----~~~~~~~~~~~~~~l~~l~~~~--------~~kl------~~r~~~~La~~~~~~g~~~~A~~ 157 (426)
+..+. .+...+ +.+.....+-+....+.++.-. ..++ ..+-.+..|++|+..|.|..|..
T Consensus 84 ~~g~~-~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 84 MLGLS-YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHH-HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHH-HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 11111 110000 1111222223333333333211 1111 11335688999999999999999
Q ss_pred HHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHH
Q 014350 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 201 (426)
Q Consensus 158 ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~ka 201 (426)
-.+.+...-.++ ...-+.....++.+.++|....+
T Consensus 163 r~~~v~~~yp~t---------~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 163 RFQYVIENYPDT---------PAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHCCCC---------chHHHHHHHHHHHHHHhCChHHH
Confidence 999988876532 22233444445677777776643
No 38
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.047 Score=57.16 Aligned_cols=220 Identities=17% Similarity=0.170 Sum_probs=123.5
Q ss_pred hhHhHHHHhhcccC-CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHH
Q 014350 15 VSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (426)
Q Consensus 15 ~~~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~ 93 (426)
-|+..+| .+.-+. .+++++|++.+.+..+.-.+ ....++.-++++.+.|++++|...|..|+... |. +..+.
T Consensus 3 ~SE~lLY-~~~il~e~g~~~~AL~~L~~~~~~I~D----k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pd-n~~Yy 75 (517)
T PF12569_consen 3 HSELLLY-KNSILEEAGDYEEALEHLEKNEKQILD----KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PD-NYDYY 75 (517)
T ss_pred HHHHHHH-HHHHHHHCCCHHHHHHHHHhhhhhCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-cHHHH
Confidence 3444444 333333 45799999999886443333 35668889999999999999999999999886 64 23333
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh----------hhhh-------HH---------HHhHHHHHHHH
Q 014350 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK----------NERL-------WF---------KTNLKLCKIWF 147 (426)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----------~~kl-------~~---------r~~~~La~~~~ 147 (426)
......+.-.. ..++.+.+.+..+|+...+..-.+. .|-- |+ .+-.+|-.+|-
T Consensus 76 ~~L~~~~g~~~-~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 76 RGLEEALGLQL-QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHHHHhhhc-ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 33332221111 1111112333333332222110000 0000 11 12224444555
Q ss_pred HhccHHHHHHHHHHHHhhcccCCC---Cc--chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHH
Q 014350 148 DMGEYGRMSKILKELHKSCQREDG---TD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (426)
Q Consensus 148 ~~g~~~~A~~ll~el~~~~~~~~~---~~--d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~ 222 (426)
+..+..-..+++.++......... .+ +......++=++...++.|-..|++.+|..++++|.... |.+ .
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-----Pt~-~ 228 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-----PTL-V 228 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCc-H
Confidence 555544445555555443221100 00 000012233344555688889999999999999885433 222 2
Q ss_pred HHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 223 IIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
.++..-|.++-|.|++.+|+...-++
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 47778889999999999999887777
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0039 Score=62.26 Aligned_cols=201 Identities=15% Similarity=0.171 Sum_probs=130.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
++.+|+++|.+.|++.++-+. +...+|-+|+-.+-.+|+.+++++++-+|..++ .+.++-.|+ +...++.
T Consensus 501 f~ngd~dka~~~ykeal~nda----sc~ealfniglt~e~~~~ldeald~f~klh~il-----~nn~evl~q-ianiye~ 570 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA----SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-----LNNAEVLVQ-IANIYEL 570 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch----HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-----HhhHHHHHH-HHHHHHH
Confidence 467899999999999987653 467899999999999999999999998887665 333333332 2222322
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
..+ ..+..+++-.+-.++ .++- .+..+||.+|-+.|+-..|.....+...+..- +-+.+|-+.
T Consensus 571 led--~aqaie~~~q~~sli---p~dp---~ilskl~dlydqegdksqafq~~ydsyryfp~---------nie~iewl~ 633 (840)
T KOG2003|consen 571 LED--PAQAIELLMQANSLI---PNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYFPC---------NIETIEWLA 633 (840)
T ss_pred hhC--HHHHHHHHHHhcccC---CCCH---HHHHHHHHHhhcccchhhhhhhhhhcccccCc---------chHHHHHHH
Confidence 222 334555443322211 1111 34679999999999999999988888777542 133444433
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHH
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky 266 (426)
-+|+...-+.|+-.+++++--+.+... +-.++-+-.+-..|||..|...|.+.-+.| |+-.++|++
T Consensus 634 ---ayyidtqf~ekai~y~ekaaliqp~~~------kwqlmiasc~rrsgnyqka~d~yk~~hrkf-----pedldclkf 699 (840)
T KOG2003|consen 634 ---AYYIDTQFSEKAINYFEKAALIQPNQS------KWQLMIASCFRRSGNYQKAFDLYKDIHRKF-----PEDLDCLKF 699 (840)
T ss_pred ---HHHHhhHHHHHHHHHHHHHHhcCccHH------HHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----ccchHHHHH
Confidence 367777778899999888744332211 111122223345789999998888876655 344567777
Q ss_pred HH
Q 014350 267 LV 268 (426)
Q Consensus 267 ~~ 268 (426)
++
T Consensus 700 lv 701 (840)
T KOG2003|consen 700 LV 701 (840)
T ss_pred HH
Confidence 65
No 40
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0014 Score=56.67 Aligned_cols=122 Identities=21% Similarity=0.278 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++..+.+.+..+++..++ ......+.-.++++++..|+++++.+.|..+....
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----------------------- 78 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----------------------- 78 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----------------------
Confidence 456788888889999887654 34456777788999999999999999998775542
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
|+ .. ... -..++||.++.+.|+|++|...|+.+... ...-.+...
T Consensus 79 ~d--~~-l~~-------------------~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-------------~~~~~~~~~ 123 (145)
T PF09976_consen 79 PD--PE-LKP-------------------LARLRLARILLQQGQYDEALATLQQIPDE-------------AFKALAAEL 123 (145)
T ss_pred CC--HH-HHH-------------------HHHHHHHHHHHHcCCHHHHHHHHHhccCc-------------chHHHHHHH
Confidence 22 10 000 12568999999999999999999663221 112234455
Q ss_pred HHHHHHhhcCHHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a 208 (426)
...++.+.|++.+|+..|+++
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 667899999999999998875
No 41
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.0021 Score=55.58 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.+.+|+.+.+.|++++|.+.++.+..... ++ ...--..+...++++..|++.+|...++. +.++
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-----d~----~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~ 114 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAP-----DP----ELKPLARLRLARILLQQGQYDEALATLQQ-------IPDE 114 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCc
Confidence 56899999999999999999999988752 12 22222334445888999999999998754 2233
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
...+......|.++...|++.+|...|..+
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 345567788999999999999999998775
No 42
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.72 E-value=0.014 Score=64.17 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.+++++|++.|.+.++.++++ ..++..++.++...|+++++.+.+..+...
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDF----FPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456888888888887766543 345666777777778887777777777654
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.0041 Score=59.87 Aligned_cols=71 Identities=13% Similarity=0.277 Sum_probs=52.3
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
..+--+|.++.||+++...|+|+.|.+.++.+... +. .++-|+.-.-..-|..+|+.......+..+..
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--------n~---~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--------NP---EYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--------Ch---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445588899999999999999999999988776 21 33444444444567888999888888887754
Q ss_pred hh
Q 014350 211 IK 212 (426)
Q Consensus 211 i~ 212 (426)
..
T Consensus 278 ~~ 279 (389)
T COG2956 278 TN 279 (389)
T ss_pred cc
Confidence 43
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.61 E-value=0.007 Score=61.73 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH----HHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE----KCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~----k~v~~il~~~ 104 (426)
++++++|++.++...+..|++ ..++..++.++.+.|+|+.+.+.+..+.+.- ..+..... ......++.-
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRH----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888877755 3567788888999999999998888887662 11121111 1111112111
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhhh-hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 105 SGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~~~-~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
...++ .+.+.... +... ..+--.++...+|..+...|++++|.+.+.+..+...+ +. ...+.
T Consensus 240 ~~~~~--~~~L~~~~-------~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-----~~---~~~~~ 302 (409)
T TIGR00540 240 MADEG--IDGLLNWW-------KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-----DR---AISLP 302 (409)
T ss_pred HHhcC--HHHHHHHH-------HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-----cc---cchhH
Confidence 11111 11111111 1111 11122345668899999999999999999999998542 21 11111
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHH
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (426)
+...-..+..+|..++...++++.+..+. +|. ..+....|.++...++|.+|.++|..
T Consensus 303 --~l~~~~~l~~~~~~~~~~~~e~~lk~~p~--~~~--~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 303 --LCLPIPRLKPEDNEKLEKLIEKQAKNVDD--KPK--CCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred --HHHHhhhcCCCChHHHHHHHHHHHHhCCC--Chh--HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 11111233457778888877777654321 242 34556778888999999999998883
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.58 E-value=0.0083 Score=69.31 Aligned_cols=198 Identities=10% Similarity=-0.013 Sum_probs=126.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH--------HH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI--------NN 99 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v--------~~ 99 (426)
..+++++|++.|++.++.+|++ ..+...++.+|.+.|+++++...+..++... +..+.......+ ..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGS----VWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence 3578999999999999998864 2356789999999999999999999988765 433222111110 11
Q ss_pred HHHHhcCCCCCC-hhHHHH---------H------------HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHH
Q 014350 100 IMDFVSGSASQN-FSLLRE---------F------------YQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSK 157 (426)
Q Consensus 100 il~~~~~~~~~~-~~~~~~---------~------------~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ 157 (426)
.+..+..+|... .+...+ + ++.+.++++...+ -......||.++.+.|++++|.+
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~---~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP---STRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC---CchHHHHHHHHHHHcCCHHHHHH
Confidence 112222221100 000000 0 1112222221111 11345689999999999999999
Q ss_pred HHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhc
Q 014350 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ 237 (426)
Q Consensus 158 ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~ 237 (426)
.++++...... -.+.....++++...|++.+|...++.+....+. ++. .....|.++...++
T Consensus 625 ~y~~al~~~P~------------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~--~~~----~~~~la~~~~~~g~ 686 (1157)
T PRK11447 625 AYQRVLTREPG------------NADARLGLIEVDIAQGDLAAARAQLAKLPATAND--SLN----TQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC--ChH----HHHHHHHHHHhCCC
Confidence 99999887321 1245566678899999999999999977543221 222 22334567778899
Q ss_pred HHHHHHHHHHHHhh
Q 014350 238 WADAATDFFEAFKN 251 (426)
Q Consensus 238 y~~A~~~f~ea~~~ 251 (426)
+.+|...|..+...
T Consensus 687 ~~eA~~~~~~al~~ 700 (1157)
T PRK11447 687 TAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998764
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.55 E-value=0.018 Score=52.06 Aligned_cols=173 Identities=10% Similarity=-0.005 Sum_probs=114.2
Q ss_pred chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 014350 49 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (426)
Q Consensus 49 ~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~ 128 (426)
+.......+.+++..+...|+++++.+.+...+... +... .....+...+....+ .+...+.++.+++.-
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~-----~~~~~la~~~~~~~~--~~~A~~~~~~al~~~-- 95 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDY-----LAYLALALYYQQLGE--LEKAEDSFRRALTLN-- 95 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH-----HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhC--
Confidence 344567889999999999999999999999987765 4322 111222222222122 445555555555421
Q ss_pred hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 129 ~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
.. .......++.++...|++++|.+.+.+....... ......+......+...|++.+|...++++
T Consensus 96 -~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 96 -PN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY----------PQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred -CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1134567899999999999999999998764211 111223333456788999999999999988
Q ss_pred HhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 209 ~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
....+. ++ ..+...|.++...++|.+|...|.++...
T Consensus 162 ~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 162 LQIDPQ--RP----ESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHhCcC--Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 655322 12 23445677888899999999988887654
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.51 E-value=0.014 Score=67.40 Aligned_cols=199 Identities=12% Similarity=0.081 Sum_probs=127.0
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh-hHHHHHHH--------
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCIN-------- 98 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k-~~~~k~v~-------- 98 (426)
..+++++|+..|+++++.++++ ..++..++.++.+.|+++++.+++.+.+... +.... ......+.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKD----SEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHH
Confidence 4578999999999999988765 4678899999999999999999999998875 43221 11111111
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
...+...... +.+.....++.+++. .. . .......||.++...|++++|.+.++++...-.... +. .
T Consensus 356 ~~g~~~~~~g--~~~eA~~~~~~Al~~---~P-~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~---~a--~ 422 (1157)
T PRK11447 356 QQGDAALKAN--NLAQAERLYQQARQV---DN-T--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT---NA--V 422 (1157)
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHh---CC-C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HH--H
Confidence 0111111111 234445555544442 11 1 112355789999999999999999988887643210 10 0
Q ss_pred hhH-----------------------------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHH
Q 014350 179 SQL-----------------------------------LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGI 223 (426)
Q Consensus 179 ~~l-----------------------------------~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~ 223 (426)
..+ .+.+..+...+...|++.+|...++++....+. +|.
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~---- 496 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVW---- 496 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH----
Confidence 001 122233455677788999999999888765432 122
Q ss_pred HHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 224 IRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 224 i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+....|.++...+++.+|...|..+..
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334556777888999999988888765
No 48
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=97.47 E-value=0.003 Score=63.53 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=109.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCC--hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh------hcch
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE------AGNQ 258 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~--p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~------~~~~ 258 (426)
-..|++.-+|||..|...++-..-...+++. |..+-.+..+-|..|+-.|+|.+|.+.|..+...... ..+.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 3458999999999888876654211112222 4445566788899999999999999999998532211 1111
Q ss_pred -------hHHHHHHHHHHHHHhhCCCCC-CCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcC----
Q 014350 259 -------RRIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMD---- 326 (426)
Q Consensus 259 -------~~~~~lky~~L~~lL~~~~~~-~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~---- 326 (426)
...++..-+++|..|++..++ ++.+..-.+| .+=......+|+..|.+......+.|-.
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky---------~ek~~kmq~gd~~~f~elF~~acPKFIsp~~p 277 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKY---------GEKMEKMQRGDEEAFEELFSFACPKFISPVSP 277 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---------HHHHHHHHccCHHHHHHHHHhhCCCccCCCCC
Confidence 222333334445555543221 1111100011 1112234567888888877665443321
Q ss_pred ------------ChhHHHHHHHHHHHHHHH----HHHHhccccccccchhHHhHhCCChHHHHHHHH
Q 014350 327 ------------DPFIRNYIEDLLKNVRTQ----VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (426)
Q Consensus 327 ------------D~~l~~~~~~L~~~l~~~----~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~ 377 (426)
|| ...|++-+.+.|..+ .|+.+++-|++|+++.+|..++++++++...|.
T Consensus 278 p~~~~~~~~~~~e~-~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll 343 (404)
T PF10255_consen 278 PDYDGPSQNKNKEP-YRRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLL 343 (404)
T ss_pred CCcccccchhhhhH-HHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHH
Confidence 23 234555566655554 788899999999999999999999997765554
No 49
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.47 E-value=0.016 Score=60.13 Aligned_cols=186 Identities=15% Similarity=0.199 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
++..+-||+.|++.++.++.- ..++.+++..+.+.|+.+++..+|.+-+.+- +. -+.+++++...+.+-.
T Consensus 299 qG~ldlAI~~Ykral~~~P~F----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~-----hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPNF----PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN-----HADAMNNLGNIYREQG 368 (966)
T ss_pred cccHHHHHHHHHHHHhcCCCc----hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHHHhc
Confidence 455666677776666666532 3456666666666677777777666666553 22 2334455554444311
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
..+....+|..++++.-. +..-..+||.+|-++|++++|...+++....-.+ -.+-+...
T Consensus 369 --~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------------fAda~~Nm 428 (966)
T KOG4626|consen 369 --KIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------------FADALSNM 428 (966)
T ss_pred --cchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------------HHHHHHhc
Confidence 133455566665553211 1122457888888888888888888887766321 23344444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
...+-.+||...|-..+++|..++++..+. .---|.+|-..|+..+|...|.++++
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeA------hsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEA------HSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHH------HhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 456667777777777777776665443221 11123344455666666666666654
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.056 Score=54.28 Aligned_cols=191 Identities=15% Similarity=0.159 Sum_probs=123.0
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG--KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~--~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
++++|+++|++.++...+++. ....-+-.+++-+++-+| ++..+.++-..-+..- +-.+- ..+++-=..+
T Consensus 430 lk~~d~~~aieilkv~~~kdn---k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~----a~~nkgn~~f 501 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDN---KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAA----ALTNKGNIAF 501 (840)
T ss_pred HhccCHHHHHHHHHHHHhccc---hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHH----HhhcCCceee
Confidence 567889999999887754442 223556677888887755 6666666555443331 11100 0010000001
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHH
Q 014350 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~ 184 (426)
. +.+.+...++|..++.. +---.....+++-.+...|+.++|+++..+++.... ..+++
T Consensus 502 ~---ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~------------nn~ev 560 (840)
T KOG2003|consen 502 A---NGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------------NNAEV 560 (840)
T ss_pred e---cCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------------hhHHH
Confidence 1 11244555555544431 111123356788889999999999999999998853 24567
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 185 ~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~-~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
+.....+|-.+.|...|-+.+-.+..+ ++ +|.+..++ |.+|-.+|+-..|++++|++|+-|.
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl---ip~dp~ilskl----~dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL---IPNDPAILSKL----ADLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc---CCCCHHHHHHH----HHHhhcccchhhhhhhhhhcccccC
Confidence 667778999999999999998877543 44 57766544 4456688999999999999998775
No 51
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=97.44 E-value=0.00024 Score=61.54 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=65.9
Q ss_pred CcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHH
Q 014350 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (426)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~e 371 (426)
+|++..+..|.++..++++..|-..++.+. -.+.+...+..|.+.+|+.....+...|++|+++.+|+.||++.++
T Consensus 38 ~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~e 113 (143)
T PF10075_consen 38 DPEIKAIWSLGQALWEGDYSKFWQALRSNP----WSPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEE 113 (143)
T ss_dssp -TTHHHHHHHHHHHHTT-HHHHHHHS-TT--------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHH
Confidence 588999999999999999999987665431 1245667788899999999999999999999999999999999888
Q ss_pred HHHHHHHh
Q 014350 372 VEQLLVSL 379 (426)
Q Consensus 372 vE~~l~~l 379 (426)
+++++.+.
T Consensus 114 l~~~~~~~ 121 (143)
T PF10075_consen 114 LEKFIKSR 121 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888774
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.31 E-value=0.027 Score=62.19 Aligned_cols=198 Identities=8% Similarity=0.069 Sum_probs=126.9
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|+++++..+..... +...++.+|...|+++++.++|..++..- +.......... ..+.-.+..
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~-~~L~~a~~~- 322 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEEL-ADLFYSLLE- 322 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHH-HHHHHHHHh-
Confidence 3457899999999998765322221 22335889999999999999999987653 22111001111 111111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhh------------hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcch
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~------------~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~ 175 (426)
.+ +.+.....++.+.+. ... +--+......+|.++...|++++|.+.++++...... +
T Consensus 323 ~g-~~~eA~~~l~~~~~~---~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n- 392 (765)
T PRK10049 323 SE-NYPGALTVTAHTINN---SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----N- 392 (765)
T ss_pred cc-cHHHHHHHHHHHhhc---CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-
Confidence 11 123333333332221 110 0124455678999999999999999999999877431 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 176 ~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
.++....+.++...|++.+|...++++....+. ++ .+....|..++..++|.+|...+-+....+.
T Consensus 393 ------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd--~~----~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 393 ------QGLRIDYASVLQARGWPRAAENELKKAEVLEPR--NI----NLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 356777778999999999999999998765421 11 1555667788889999999999988876543
No 53
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.11 Score=47.55 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh
Q 014350 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (426)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 130 (426)
+|+.+.+-+.+.-+++.|+|+++.+.++.+.... |+.+ ....
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----------------------P~s~--~a~~------------- 43 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----------------------PNSP--YAPQ------------- 43 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------------------TTST--THHH-------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------CCCh--HHHH-------------
Confidence 4677889999999999999999999999998886 3211 1111
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHH---h---hcCHHHHHHH
Q 014350 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT---E---TKNNKKLKQL 204 (426)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~---~---~~d~~kak~~ 204 (426)
..+.+|..++..|+|++|...++++...-.+.+..++ +.+....+.+.. . ..|...++..
T Consensus 44 -------A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~-------A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 44 -------AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY-------ALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp -------HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH-------HHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh-------HHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 2568899999999999999999999887654321111 111111111111 1 3455555555
Q ss_pred HHHHHhhhccCCC----hhHH---HHH-------HHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 014350 205 YQKALAIKSAIPH----PRIM---GII-------RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (426)
Q Consensus 205 l~~a~~i~~~~~~----p~~~---~~i-------~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~ 270 (426)
+..-..+....|+ +... ..+ -..-|.++...++|..|...|-.+++.|... +....++.+++-+
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t--~~~~~al~~l~~~ 187 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT--PAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC--chHHHHHHHHHHH
Confidence 5554444444442 2111 111 2466889999999999999999999988543 3444556666554
Q ss_pred HH
Q 014350 271 NM 272 (426)
Q Consensus 271 ~l 272 (426)
-.
T Consensus 188 y~ 189 (203)
T PF13525_consen 188 YY 189 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.11 E-value=0.12 Score=56.08 Aligned_cols=98 Identities=7% Similarity=0.009 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
+....+|.++...|++++|...+++....... + .+.......++...|++..|...++++....+.
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-----~-------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-- 350 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPD-----L-------PYVRAMYARALRQVGQYTAASDEFVQLAREKGV-- 350 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--
Confidence 55678899999999999999999998876321 1 123334457788899999999998877543221
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
++ ......|..+...+++.+|...|..+....
T Consensus 351 ~~----~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TS----KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ch----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11 123334667778899999999999887643
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.10 E-value=0.018 Score=55.35 Aligned_cols=199 Identities=14% Similarity=0.164 Sum_probs=56.9
Q ss_pred hccc-CCCCHHHHHHHHHHHhcCC--ccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHH-------
Q 014350 24 EKGL-VETDPEGALAGFAEVVAME--PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS------- 93 (426)
Q Consensus 24 ak~~-~~~~~~~Ai~~~~~ii~~~--~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~------- 93 (426)
|+-+ ..+++++|++.+.+.+... +++ ......++.++...|+++.+.+.|.++...- +. .....
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~----~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~-~~~~~~~l~~l~ 88 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDD----PEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KA-NPQDYERLIQLL 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc-cc-cccccccccccc
Confidence 4444 3457889998886655443 222 2344557888888888888888888886653 21 11111
Q ss_pred -----HHHHHHHHHHhcCCCC--------------CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHH
Q 014350 94 -----EKCINNIMDFVSGSAS--------------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGR 154 (426)
Q Consensus 94 -----~k~v~~il~~~~~~~~--------------~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~ 154 (426)
.++++.+...+...++ .+.+....+++.+.. ...-.--......+|.++.+.|+.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 1111111111111111 001111111111110 00000111233466777777777777
Q ss_pred HHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH
Q 014350 155 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA 234 (426)
Q Consensus 155 A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~ 234 (426)
|.+.+++....-++ + . ++...-+.++...|+..+++.+++...+..+ .+|. ++..-|..+..
T Consensus 165 A~~~~~~al~~~P~-----~----~---~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~~----~~~~la~~~~~ 226 (280)
T PF13429_consen 165 ALRDYRKALELDPD-----D----P---DARNALAWLLIDMGDYDEAREALKRLLKAAP--DDPD----LWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHH-TT----------H---HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSCC----HCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-----C----H---HHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHHH----HHHHHHHHhcc
Confidence 77777777766431 1 1 1222223455566777777777666544321 1222 22334666667
Q ss_pred hhcHHHHHHHHHHHHh
Q 014350 235 ERQWADAATDFFEAFK 250 (426)
Q Consensus 235 ~~~y~~A~~~f~ea~~ 250 (426)
.+++.+|...|..+..
T Consensus 227 lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 227 LGRYEEALEYLEKALK 242 (280)
T ss_dssp HT-HHHHHHHHHHHHH
T ss_pred cccccccccccccccc
Confidence 7888888888888754
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.091 Score=57.31 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHhhhhh-hhhHHHHH-----------H
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQT--VKLYYRLGKYKEMMDAYREMLTYIKSAV-TRNYSEKC-----------I 97 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l--~~l~~~~~~~~~l~e~~~~l~~~~~~~~-~k~~~~k~-----------v 97 (426)
.+.|...|..|+++.+++ ++--| +.+.+..|+|-.++.+|+..+... |.. +-..+... .
T Consensus 146 ~~~A~a~F~~Vl~~sp~N------il~LlGkA~i~ynkkdY~~al~yyk~al~in-p~~~aD~rIgig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN------ILALLGKARIAYNKKDYRGALKYYKKALRIN-PACKADVRIGIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc------hHHHHHHHHHHhccccHHHHHHHHHHHHhcC-cccCCCccchhhhHHHhccchhhH
Confidence 578888888888877654 22233 356677888889999888876664 321 11111100 0
Q ss_pred HHHHHHhcC-CCCCChhHHHHHHHHHHHHHHhhhhhhhHH-------------HHhHHHHHHHHHhccHHHHHHHHHHHH
Q 014350 98 NNIMDFVSG-SASQNFSLLREFYQTTLKALEEAKNERLWF-------------KTNLKLCKIWFDMGEYGRMSKILKELH 163 (426)
Q Consensus 98 ~~il~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-------------r~~~~La~~~~~~g~~~~A~~ll~el~ 163 (426)
........+ .|. +.....-+..+-+..-+.-+.++..- -+...||..|+..|+|..+..+....-
T Consensus 219 ~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 219 LLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 000111111 111 11122222222111111111111110 345689999999999999999998888
Q ss_pred hhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHHhhHHHhHHhhcHHHHH
Q 014350 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAA 242 (426)
Q Consensus 164 ~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p~~~~~i~~~~g~~~~~~~~y~~A~ 242 (426)
..+.. ...+-+-+....|.|+++||+.+|..+|-.+.+.++.-+. |.+ =-|.++++++++..|.
T Consensus 298 ~~t~~---------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~------GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 298 KNTEN---------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV------GLGQMYIKRGDLEESK 362 (1018)
T ss_pred Hhhhh---------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc------chhHHHHHhchHHHHH
Confidence 77632 2456677777789999999999999999999877655321 221 1367888999999999
Q ss_pred HHHHHHHhhh
Q 014350 243 TDFFEAFKNY 252 (426)
Q Consensus 243 ~~f~ea~~~~ 252 (426)
.+|...++.+
T Consensus 363 ~~fEkv~k~~ 372 (1018)
T KOG2002|consen 363 FCFEKVLKQL 372 (1018)
T ss_pred HHHHHHHHhC
Confidence 9999887654
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.08 E-value=0.15 Score=47.27 Aligned_cols=190 Identities=11% Similarity=-0.002 Sum_probs=111.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhh
Q 014350 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (426)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 129 (426)
.++....+.+.+..+.+.|+++++.+.+..+.+.. |.-+ .....--.+...+....+ .+.....++..++ ..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~--~~~~a~~~la~~~~~~~~--~~~A~~~~~~~l~---~~ 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSP--YAEQAQLDLAYAYYKSGD--YAEAIAAADRFIR---LH 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCch--hHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH---HC
Confidence 35568889999999999999999999999998876 4321 122222223333333222 4455555554443 22
Q ss_pred hhhhhHHHHhHHHHHHHHHh--------ccHHHHHHHHHHHHhhcccCCCCcchhhh-----hhHHHHHHHHHHHHHhhc
Q 014350 130 KNERLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKKG-----SQLLEVYAIEIQMYTETK 196 (426)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~--------g~~~~A~~ll~el~~~~~~~~~~~d~~~~-----~~l~e~~l~e~rl~~~~~ 196 (426)
.+....-.....+|..+... |++++|.+.++++.....+.......... ............++...|
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222222345666666654 89999999999998775432111000000 000011124456788889
Q ss_pred CHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 197 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 197 d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
++.+|...++.+....+. .|. ....+...|..+...++|.+|..+|...-.
T Consensus 181 ~~~~A~~~~~~al~~~p~--~~~-~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 181 AYVAAINRFETVVENYPD--TPA-TEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ChHHHHHHHHHHHHHCCC--Ccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999888877543221 121 123445667888888999999887665433
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.08 E-value=0.12 Score=56.24 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHhccHHH----HHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 138 TNLKLCKIWFDMGEYGR----MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~----A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
....||..+...|++++ |...+++......+ -...+.....++...|++.+|...++++....+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34567777788888775 56677766665321 123445556778888889988888888765432
Q ss_pred cCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 214 ~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
. ++. .....|.++...++|.+|...|..+..
T Consensus 316 ~--~~~----a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 316 D--LPY----VRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred C--CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 122 233457778888999999998887754
No 59
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.05 E-value=0.0037 Score=48.52 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
+++++.|+..|.++++.++.+. ....+..++.+|++.|+|+++.+.++. .+.. |
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----------------------~ 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----------------------P 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----------------------H
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----------------------C
Confidence 4689999999999999876422 345677799999999999999999987 3332 1
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~e 161 (426)
. . ..+..-+|+.+++.|+|++|.+.+++
T Consensus 56 ~--~-----------------------~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 56 S--N-----------------------PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp C--H-----------------------HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred C--C-----------------------HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 1 0 01134568999999999999998876
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=97.01 E-value=0.035 Score=59.00 Aligned_cols=150 Identities=8% Similarity=-0.097 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
+++++|++.+++.++.++++ ..++..++.++...|+++++.+.+.+.+... |+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----------------------P~ 370 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNN----PQALGLLGLINTIHSEYIVGSLLFKQANLLS-----------------------PI 370 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------CC
Confidence 45789999999999998865 4566778899999999999999998887774 43
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
. . .....+|.++...|++++|...+++....... +. .......
T Consensus 371 ~-~------------------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-----~~-------~~~~~~~ 413 (553)
T PRK12370 371 S-A------------------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPT-----RA-------AAGITKL 413 (553)
T ss_pred C-H------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----Ch-------hhHHHHH
Confidence 0 0 01356788888889999998888888777432 10 0111112
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
.+++..|++.+|...+.++....+. .+|. .....|.++...|++.+|...|...
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p-~~~~----~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQ-DNPI----LLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccc-cCHH----HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 2355577888888877766433210 1122 2344566677788888888887664
No 61
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=97.00 E-value=0.18 Score=48.09 Aligned_cols=216 Identities=13% Similarity=0.151 Sum_probs=101.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh---hhhhHH
Q 014350 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK---NERLWF 136 (426)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~kl~~ 136 (426)
=+..+.+.|++..+.++...++... ..-.....+..+.++++.+...|.. ...+..++.. .++|+. ...-.-
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~-~~~~~~~~~~~~~rl~~l~~~~~~~-~p~r~~fi~~---ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVY-EKSEDPVDEESIARLIELISLFPPE-EPERKKFIKA---AIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHH-HHTT---SHHHHHHHHHHHHHS-TT--TTHHHHHHH---HHHHHHTSS-TT--H
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCC-cchHHHHHHH---HHHHHccCCCCCCCH
Confidence 3456667777777777776666665 3322333344455555555554431 2235666555 444542 223444
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.+...+|..+.+.|+|.+|...+--. +++ .....+.+. -.....++....-.+
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~---------~~~----~~~~~~~ll--~~~~~~~~~~e~dlf------------ 143 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLG---------TDP----SAFAYVMLL--EEWSTKGYPSEADLF------------ 143 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS----------HH----HHHHHHHHH--HHHHHHTSS--HHHH------------
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhc---------CCh----hHHHHHHHH--HHHHHhcCCcchhHH------------
Confidence 77789999999999998886543211 111 111111011 111111221111111
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccH
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEIL 296 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~ 296 (426)
-....+-++..+|.+.|...|..-.+.+... .|. +.+.....+...|.+.
T Consensus 144 --------i~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~-~p~---------------------~~~~~~~~~~~~Plln 193 (260)
T PF04190_consen 144 --------IARAVLQYLCLGNLRDANELFDTFTSKLIES-HPK---------------------LENSDIEYPPSYPLLN 193 (260)
T ss_dssp --------HHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH-------------------------EEEEEEEEESS-HHHH
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc-Ccc---------------------hhccccCCCCCCchHH
Confidence 1111123334455555543332221111111 010 1000111122346677
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHH
Q 014350 297 AMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDL 337 (426)
Q Consensus 297 ~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L 337 (426)
.+.-|+.+...++...|..+.++|++.+..||.+...++.+
T Consensus 194 F~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~I 234 (260)
T PF04190_consen 194 FLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKI 234 (260)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 78889999999999999999999999999998876655444
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.98 E-value=0.28 Score=51.46 Aligned_cols=213 Identities=13% Similarity=0.235 Sum_probs=127.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhhhhh-----------hhhHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY--RLGKYKEMMDAYREMLTYIKSAV-----------TRNYSE 94 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~--~~~~~~~l~e~~~~l~~~~~~~~-----------~k~~~~ 94 (426)
+-++.++|.+.|..+|+.+|++... .+.|....-+-. ...+.+...+.|..+.... |.- +-....
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Y-y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~ 127 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDY-YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFK 127 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHH
Confidence 3567899999999999999976443 333333221111 2235677788888775554 310 101111
Q ss_pred HHHHHHHHH-hcC-CCC---------CC---hhHHHHHHHHHHHHHHhhh-----------hhhhHHHHhHHHHHHHHHh
Q 014350 95 KCINNIMDF-VSG-SAS---------QN---FSLLREFYQTTLKALEEAK-----------NERLWFKTNLKLCKIWFDM 149 (426)
Q Consensus 95 k~v~~il~~-~~~-~~~---------~~---~~~~~~~~~~~l~~l~~~~-----------~~kl~~r~~~~La~~~~~~ 149 (426)
..+...+.. +.+ +|. .+ ......+++.....++..+ .....+-+.+-||.+|-..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 111111111 111 232 01 1122222222222222210 0112223567899999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh-------cc--------
Q 014350 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK-------SA-------- 214 (426)
Q Consensus 150 g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~-------~~-------- 214 (426)
|++++|++++.+.-..+++ ++|++...+|++-+.||+.+|-..++.|+... +.
T Consensus 208 g~~~~Al~~Id~aI~htPt------------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPT------------LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred CCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 9999999999998888532 68999999999999999999999999885432 10
Q ss_pred ------------CC----Ch----hHHHHHH--HhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 215 ------------IP----HP----RIMGIIR--ECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 215 ------------~~----~p----~~~~~i~--~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
++ +| .-|.-+| .-.|..|...|+|-.|.+.|..+.+.|.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 00 01 1122222 35678888999999999999999777654
No 63
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.97 E-value=0.15 Score=48.02 Aligned_cols=178 Identities=11% Similarity=0.098 Sum_probs=119.6
Q ss_pred hhHhHHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHH
Q 014350 15 VSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (426)
Q Consensus 15 ~~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~ 93 (426)
..+...|.+|... ..+|+++|++.|+++....+ .++|..++...++..+++.++++++.-.+.....+. |.-+...-
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY 109 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADY 109 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhH
Confidence 3677888888764 55689999999999965544 467889999999999999999999999999999987 76544444
Q ss_pred HHHHHHHHHHhcCCCC--CChhHHHHHHHHHHHHHHhhh--------hhhhHH------HHhHHHHHHHHHhccHHHHHH
Q 014350 94 EKCINNIMDFVSGSAS--QNFSLLREFYQTTLKALEEAK--------NERLWF------KTNLKLCKIWFDMGEYGRMSK 157 (426)
Q Consensus 94 ~k~v~~il~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~--------~~kl~~------r~~~~La~~~~~~g~~~~A~~ 157 (426)
+-=++.+.. +..+++ .+......-+....+.++.-. ..|+.. .-.+..|++|+..|.|-.|..
T Consensus 110 ~~YlkgLs~-~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 110 AYYLKGLSY-FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHHH-hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 444444443 222332 223333444444444444311 122211 446788999999999999999
Q ss_pred HHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHH
Q 014350 158 ILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (426)
Q Consensus 158 ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~ 204 (426)
-.+++...-.++ ...-+-+......|.++|-...|+..
T Consensus 189 R~~~v~e~y~~t---------~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 189 RFEEVLENYPDT---------SAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHhccccc---------cchHHHHHHHHHHHHHhCChHHHHHH
Confidence 888888874432 22334444444567777776666553
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.91 E-value=0.41 Score=46.51 Aligned_cols=193 Identities=14% Similarity=0.105 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (426)
..+.+|..+.+++...+-+.+.....+.+.+.+|...|+++++...|++.+... |.... ....+...+....+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~-----a~~~lg~~~~~~g~- 113 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMAD-----AYNYLGIYLTQAGN- 113 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHH-----HHHHHHHHHHHCCC-
Confidence 468899999999976542233356788899999999999999999999988876 54332 22333333333222
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r 190 (426)
.+.....++.+++. +. . +.....++|.++...|++++|.+.+........+ +. ....+ ..
T Consensus 114 -~~~A~~~~~~Al~l-~P-~----~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-----~~--~~~~~------~~ 173 (296)
T PRK11189 114 -FDAAYEAFDSVLEL-DP-T----YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-----DP--YRALW------LY 173 (296)
T ss_pred -HHHHHHHHHHHHHh-CC-C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CH--HHHHH------HH
Confidence 44455555555542 11 1 1223467899999999999999999998876431 21 01111 12
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhc-cC--------------------------C-ChhH---HHHHHHhhHHHhHHhhcHH
Q 014350 191 MYTETKNNKKLKQLYQKALAIKS-AI--------------------------P-HPRI---MGIIRECGGKMHMAERQWA 239 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~~i~~-~~--------------------------~-~p~~---~~~i~~~~g~~~~~~~~y~ 239 (426)
+....+++.+|...+.++....+ .. . .+.+ ....+.+-|.++...|++.
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 23345667777766644321110 00 0 0000 1123455677777778888
Q ss_pred HHHHHHHHHHh
Q 014350 240 DAATDFFEAFK 250 (426)
Q Consensus 240 ~A~~~f~ea~~ 250 (426)
+|..+|..+..
T Consensus 254 ~A~~~~~~Al~ 264 (296)
T PRK11189 254 EAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHH
Confidence 88877777754
No 65
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.86 E-value=0.84 Score=52.15 Aligned_cols=195 Identities=11% Similarity=0.081 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
+.+++++|.+.|.+..+....- ....+..++..|.+.|+++++.+.+..+... ...+ + ....+.++..+.+.
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~P---dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~P-D--~vTYnsLI~a~~k~ 555 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVEA---NVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKP-D--RVVFNALISACGQS 555 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCC-C--HHHHHHHHHHHHHC
Confidence 3456788888888876543211 1345566777788888888888777776443 1000 0 11222222222221
Q ss_pred CCCChhHHHHHHHHH------------------------------HHHHHhhhhhh--hHHHHhHHHHHHHHHhccHHHH
Q 014350 108 ASQNFSLLREFYQTT------------------------------LKALEEAKNER--LWFKTNLKLCKIWFDMGEYGRM 155 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~------------------------------l~~l~~~~~~k--l~~r~~~~La~~~~~~g~~~~A 155 (426)
.. .+...++++.. .+.++...... -...+..-+...|...|++++|
T Consensus 556 G~--~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 556 GA--VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CC--HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 11 11111111111 11111110000 0112334566667777777777
Q ss_pred HHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHh
Q 014350 156 SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE 235 (426)
Q Consensus 156 ~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~ 235 (426)
.+++.++...-..+ | ...+...+..|.+.|++.+|..+++...+.. + .|.. ..+..-...++..
T Consensus 634 l~lf~eM~~~Gv~P----D-------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G--~-~pd~--~tynsLI~ay~k~ 697 (1060)
T PLN03218 634 LSIYDDMKKKGVKP----D-------EVFFSALVDVAGHAGDLDKAFEILQDARKQG--I-KLGT--VSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHHcCCCC----C-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-CCCH--HHHHHHHHHHHhC
Confidence 77777776653222 1 1123334456777777777777777664321 1 1111 1222233445567
Q ss_pred hcHHHHHHHHHHH
Q 014350 236 RQWADAATDFFEA 248 (426)
Q Consensus 236 ~~y~~A~~~f~ea 248 (426)
+++.+|.+.|.+.
T Consensus 698 G~~eeA~~lf~eM 710 (1060)
T PLN03218 698 KNWKKALELYEDI 710 (1060)
T ss_pred CCHHHHHHHHHHH
Confidence 7888887777665
No 66
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.82 E-value=0.015 Score=55.67 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=82.9
Q ss_pred HhHHHHhhccc--CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014350 17 RVLCSILEKGL--VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (426)
Q Consensus 17 ~~~~~~~ak~~--~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (426)
+-..|..|-++ +++++++|+..|+.+++..|+. .....+...++.+|+..|+++++.+.|..+.+.. |.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PK------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-------
Confidence 45567777775 4678999999999999988753 3356788999999999999999999998888776 32
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
+|. ... ..+++|.++.+.|++++|.+.++++.+...+
T Consensus 213 ------------s~~-----~~d--------------------Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 213 ------------SPK-----AAD--------------------AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ------------Ccc-----hhH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 111 000 1457888999999999999999999887653
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.82 E-value=0.23 Score=48.99 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=54.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhc-chhHHH
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG-NQRRIQ 262 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i~~~---~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~-~~~~~~ 262 (426)
...+.+...++...|...++..+..... .........+..+.++.+...|+|.+|...+.++.......| +....+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~ 348 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRD 348 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3456677888899999888877655443 111222345677888999999999999999999987665554 333344
Q ss_pred HH
Q 014350 263 CL 264 (426)
Q Consensus 263 ~l 264 (426)
++
T Consensus 349 ~~ 350 (355)
T cd05804 349 VF 350 (355)
T ss_pred HH
Confidence 44
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.092 Score=55.01 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh---------------hhhhhHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS---------------AVTRNYS 93 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~---------------~~~k~~~ 93 (426)
+-+-.+|+..|+++-....+ +.| ++.|+|+.||..++|+++...+..++..- + .+..-+.
T Consensus 332 ~y~~~~A~~~~~klp~h~~n-t~w---vl~q~GrayFEl~~Y~~a~~~F~~~r~~~-p~rv~~meiyST~LWHLq~~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN-TGW---VLSQLGRAYFELIEYDQAERIFSLVRRIE-PYRVKGMEIYSTTLWHLQDEVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccchhHHHHHHHHHHhhHHH
Confidence 34568999999996444333 346 78999999999999999999999887652 2 1123333
Q ss_pred HHHHHHHHHHhcCCCC-----CChhHHHHHHHHHHHHHHhhh--hhh----------------------hHH--------
Q 014350 94 EKCINNIMDFVSGSAS-----QNFSLLREFYQTTLKALEEAK--NER----------------------LWF-------- 136 (426)
Q Consensus 94 ~k~v~~il~~~~~~~~-----~~~~~~~~~~~~~l~~l~~~~--~~k----------------------l~~-------- 136 (426)
.-.-+.+++.-...|+ .|-=-+++-+++++++++.+. +.+ -.+
T Consensus 407 s~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 407 SYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 4444455554444443 011113455566666655321 110 011
Q ss_pred ---HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 137 ---KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 137 ---r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
+.-+-||.+|..+|+++.|.-.+++....... +.. ++...++++.++|..++|..++++|-....
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~----------nsv--i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS----------NSV--ILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc----------chh--HHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 34457888999999999999888888776321 112 334445788899999999999999876654
Q ss_pred cCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 214 ~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
+-+.++. ..|.+....++|.+|...+-+.
T Consensus 555 kn~l~~~------~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 555 KNPLCKY------HRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred CCchhHH------HHHHHHHhhcchHHHHHHHHHH
Confidence 4333332 2345556677888888877665
No 69
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.79 E-value=0.033 Score=45.31 Aligned_cols=104 Identities=9% Similarity=0.025 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
+.+.+|..+...|++++|.+.+.++.....+ + ....+......+++...+++..|...++.+....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-- 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK-----S----TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-- 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c----cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC--
Confidence 4578899999999999999999999876431 1 1223455666788999999999999999876543221
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
| .........|.++...+++.+|...|.++...+.
T Consensus 73 ~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 73 P-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred C-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 1 1123455667777889999999999999887653
No 70
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.75 E-value=0.23 Score=56.21 Aligned_cols=97 Identities=6% Similarity=-0.065 Sum_probs=71.2
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
....++|.++...|++++|...+++......+ + .+.+..-..++...|++..|...++++....+.
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-----~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-- 675 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN-----N-------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD-- 675 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Confidence 34568899999999999999999998887431 1 134444455677789999999998888665432
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
+| .+....|.++...+++.+|..+|..++..
T Consensus 676 ~~----~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 676 DP----ALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12 34456677788889999999999998753
No 71
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.70 E-value=0.12 Score=56.55 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|.+.|.+..+. ...++..++..|.+.|+++++.+.+..+... +..+ . ......++..+....
T Consensus 272 ~g~~~~A~~vf~~m~~~-------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~p-d--~~t~~~ll~a~~~~g 339 (697)
T PLN03081 272 CGDIEDARCVFDGMPEK-------TTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSI-D--QFTFSIMIRIFSRLA 339 (697)
T ss_pred CCCHHHHHHHHHhCCCC-------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC-C--HHHHHHHHHHHHhcc
Confidence 46788898888877322 1346778899999999999999999888543 1111 1 123455555554422
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
. .+...++++...+. . -..-..+..-|...|...|++++|.+++.++... | .. .+-..
T Consensus 340 ~--~~~a~~i~~~m~~~----g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d----~~---t~n~l 397 (697)
T PLN03081 340 L--LEHAKQAHAGLIRT----G-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------N----LI---SWNAL 397 (697)
T ss_pred c--hHHHHHHHHHHHHh----C-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------C----ee---eHHHH
Confidence 2 22233333322210 0 0111123345666677777777777666655321 1 00 12222
Q ss_pred HHHHHhhcCHHHHHHHHHHH
Q 014350 189 IQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a 208 (426)
+.-|...|+..+|..++++-
T Consensus 398 I~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 34555666666666666654
No 72
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.67 E-value=0.24 Score=56.50 Aligned_cols=97 Identities=7% Similarity=-0.002 Sum_probs=51.9
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
+..-|...|...|++++|.+++.++...-..+ + +..+-..+..|.+.|++.+|..+++..... ++.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P----d-------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~--Gi~- 751 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRP----T-------VSTMNALITALCEGNQLPKALEVLSEMKRL--GLC- 751 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC-
Confidence 34566677777777777777777776542111 1 122333445667777777777777654321 111
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
|... .+......+...+++..|...|.+..+
T Consensus 752 Pd~~--Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 752 PNTI--TYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred CCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 111111234456677777777776643
No 73
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.65 E-value=0.17 Score=52.89 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+++...||..|++.++.++.- ..++.+|+.+|...+.+|.++..|..-+...
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f----~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNF----LDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcc----hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 667889999999999888753 4578888888888888888888887665553
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.53 E-value=0.096 Score=46.46 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=73.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|..+...|++++|...+++......++ ......+...+.++...|++.+|...+.++....+....
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 35789999999999999999999988764321 112345666678899999999999999988765432211
Q ss_pred h-hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 218 P-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 218 p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
+ ...+.++...|......+++..|...|.++...+..
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 1 112344444455555566777777777777655543
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.49 E-value=0.37 Score=43.98 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHH-HHhhcC--HHHHHHHHHHHHhhhccC
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKN--NKKLKQLYQKALAIKSAI 215 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl-~~~~~d--~~kak~~l~~a~~i~~~~ 215 (426)
-..||.+|...|++++|...+.+......+ + .+++.....+ +...|+ ..+|...++++.+....
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-----~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~- 142 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLRGE-----N-------AELYAALATVLYYQAGQHMTPQTREMIDKALALDAN- 142 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-
Confidence 357899999999999999999999888431 2 2444444553 456666 59999999998765432
Q ss_pred CChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhh
Q 014350 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (426)
Q Consensus 216 ~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~ 274 (426)
++ ......|..++..++|.+|..+|..+.+.-.. ++ .+..++.-+--+.+|.
T Consensus 143 -~~----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~-~r~~~i~~i~~a~~~~ 194 (198)
T PRK10370 143 -EV----TALMLLASDAFMQADYAQAIELWQKVLDLNSP-RV-NRTQLVESINMAKLLQ 194 (198)
T ss_pred -Ch----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc-cHHHHHHHHHHHHHHh
Confidence 12 23455678888999999999999998764322 22 3333444444444443
No 76
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.46 E-value=0.0064 Score=44.79 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++++++|++.|++++..+|++ ..+...++.+|.+.|+++++.+.+..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN----PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4678999999999999998865 4566789999999999999999999988776
No 77
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.46 E-value=0.87 Score=51.16 Aligned_cols=215 Identities=10% Similarity=-0.051 Sum_probs=130.2
Q ss_pred CCCCHHHHHHHHHHHhcCCc-----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP-----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~-----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (426)
..+++++|...+....+.-. ++..........++.++...|+++++..++...+... +.............+..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHH
Confidence 34678888888877654321 1222233444456788999999999999999887654 32111111111222222
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHH
Q 014350 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (426)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~ 182 (426)
.... .+ +.+.....++.++...+..............+|.++...|++++|...+.+.........+. +. ....
T Consensus 500 ~~~~-~G-~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~---~~~~ 573 (903)
T PRK04841 500 VHHC-KG-ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QL---PMHE 573 (903)
T ss_pred HHHH-cC-CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cc---cHHH
Confidence 2211 12 24455566666665544332222333456789999999999999999999988775542111 10 1111
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 183 e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
........++...|++..|...+..+........ +..........|.++...+++..|...+.++..
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233445678888999999999988866544332 222233344567788899999999988877754
No 78
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.37 Score=45.06 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHhcCCccch-hh-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 31 DPEGALAGFAEVVAMEPEKA-EW-GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~-~~-~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
+|++|-..+.+.++-.+.+. -| ..|++++++-+..+...|.++.++|.+-....-...+....+..+.+..+.+.+
T Consensus 46 ~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-- 123 (308)
T KOG1585|consen 46 KFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-- 123 (308)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--
Confidence 36666666666654332222 22 579999999999999999999999998877652334455566667777777764
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
.+.+....+|+.++.+++.....+.=+...-+.++++.....|.+|...+.+........... ..-...++..
T Consensus 124 -v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y------~~~~k~~va~ 196 (308)
T KOG1585|consen 124 -VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY------NSQCKAYVAA 196 (308)
T ss_pred -CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc------ccHHHHHHHH
Confidence 224578999999999987633334444666788889998999999887776665542211110 1123445666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~ 210 (426)
+-+++...||..|+..++.+-.
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhc
Confidence 7788888999999887766533
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.39 E-value=0.5 Score=46.63 Aligned_cols=193 Identities=8% Similarity=-0.069 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC-CC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG-SA 108 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~-~~ 108 (426)
++++.|.+.+..+....+.+... ......-+.+++..|+++++.+.+...+... |.-. ..-.+ ....+.. ..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~---~a~~~--~~~~~~~~~~ 92 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATE-RERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDL---LALKL--HLGAFGLGDF 92 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcH---HHHHH--hHHHHHhccc
Confidence 46777788888887665533221 2223334678899999999999999998876 5422 11111 1111110 01
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
........+.+ +. .........-....+|.++...|++++|...+++......+ + ...+...
T Consensus 93 ~~~~~~~~~~l----~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-----~-------~~~~~~l 154 (355)
T cd05804 93 SGMRDHVARVL----PL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-----D-------AWAVHAV 154 (355)
T ss_pred ccCchhHHHHH----hc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------cHHHHHH
Confidence 10111111211 11 11111122233457888999999999999999999887431 1 1234444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
..++...|++.+|...++++...... +|......+...|.++...|++.+|...|-++.
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 67888999999999999887654322 233334455667888999999999999988874
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.39 E-value=0.59 Score=44.16 Aligned_cols=169 Identities=7% Similarity=0.078 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhh
Q 014350 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (426)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 131 (426)
|....+...+.-+++.|+|+++.+.+..+.... |+.+ ...
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----------------------P~s~--~a~--------------- 69 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----------------------PFGP--YSQ--------------- 69 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------CCCh--HHH---------------
Confidence 456667778888899999999999999887775 3311 111
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHH-----------HhhcCHHH
Q 014350 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY-----------TETKNNKK 200 (426)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~-----------~~~~d~~k 200 (426)
...+.||..|+..|+|++|...++++.+.-.+.+..++. ..+..+ ....+. ...+|...
T Consensus 70 -----~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a---~Y~~g~--~~~~~~~~~~~~~~~~~~~~rD~~~ 139 (243)
T PRK10866 70 -----QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV---LYMRGL--TNMALDDSALQGFFGVDRSDRDPQH 139 (243)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH---HHHHHH--hhhhcchhhhhhccCCCccccCHHH
Confidence 125689999999999999999999998886543322111 111111 100110 12246666
Q ss_pred HHHHHHHHHhhhccCCC----hhHHH----------HHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHH
Q 014350 201 LKQLYQKALAIKSAIPH----PRIMG----------IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (426)
Q Consensus 201 ak~~l~~a~~i~~~~~~----p~~~~----------~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky 266 (426)
++.++..-..+....|+ |..+. .--..-|.+|...++|..|..-|-...+.|... +...++|.+
T Consensus 140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t--~~~~eal~~ 217 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT--QATRDALPL 217 (243)
T ss_pred HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC--chHHHHHHH
Confidence 77766666555555543 22221 112466788889999999999999998888543 345566666
Q ss_pred HHHHHH
Q 014350 267 LVLANM 272 (426)
Q Consensus 267 ~~L~~l 272 (426)
++-+-.
T Consensus 218 l~~ay~ 223 (243)
T PRK10866 218 MENAYR 223 (243)
T ss_pred HHHHHH
Confidence 666554
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.39 E-value=0.013 Score=42.78 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+++++|++.|+.+++..+++ ..+...++.++..+|+++++.++|...++..
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDN----PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTH----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467999999999999998753 6788999999999999999999999998775
No 82
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=96.38 E-value=0.0051 Score=55.36 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=41.8
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC--chhhHHHHHhcCceeehhhhh
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR--SAYLTFLLLKKNAYLTCSYLV 422 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 422 (426)
.++.+++.-..|.|.+||..||++.+++-.-|-.|..+|.|.|.||.....|++++. ..+..||-.+ |+ |+.+-|+
T Consensus 103 ~Fi~yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~eE~~~va~fi~~r-GR-vsi~el~ 180 (188)
T PF09756_consen 103 EFINYIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEEEMEAVAKFIKQR-GR-VSISELA 180 (188)
T ss_dssp HHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE---------------------------
T ss_pred HHHHHHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHHHHHHHHHHHHHc-CC-ccHHHHH
Confidence 446788888999999999999999999999999999999999999998888888876 5556666444 44 4777776
Q ss_pred hh
Q 014350 423 SE 424 (426)
Q Consensus 423 ~~ 424 (426)
+.
T Consensus 181 ~~ 182 (188)
T PF09756_consen 181 QE 182 (188)
T ss_dssp --
T ss_pred HH
Confidence 54
No 83
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.37 E-value=0.53 Score=46.76 Aligned_cols=186 Identities=12% Similarity=0.181 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM----DFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il----~~~ 104 (426)
++|+..|.....+..+..+-. .+++.-..++|.+.|+|+.+..+...+.+- +..+....+..=+... +-.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~----~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRH----PEVLRLALRAYIRLGAWQALLAILPKLRKA--GLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cCCChHHHHHHHHHHHHHHHHHH
Confidence 345666666666665554432 355666677788888888887777777665 3333333333332222 222
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHh-hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 105 SGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~-~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
..-.+ .+- ...+-+. ...-|.-..+..-+|.-+.++|++++|.+++.+..+...+ + . +.-
T Consensus 240 ~~~~~--~~g-------L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-----~----~-L~~ 300 (400)
T COG3071 240 RDDNG--SEG-------LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-----P----R-LCR 300 (400)
T ss_pred hcccc--chH-------HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----h----h-HHH
Confidence 21111 111 1111111 1122333456678888999999999999999999998542 2 2 111
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
. -=+...+|..+....+++..+-.. .+| -+...-|..++.++.|-+|..+|-.+..
T Consensus 301 ~-----~~~l~~~d~~~l~k~~e~~l~~h~--~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 301 L-----IPRLRPGDPEPLIKAAEKWLKQHP--EDP----LLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred H-----HhhcCCCCchHHHHHHHHHHHhCC--CCh----hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1 114566788777777766644321 134 4677788999999999999999999854
No 84
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=96.36 E-value=0.025 Score=51.72 Aligned_cols=105 Identities=18% Similarity=0.354 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCCCcc-c-cc-ccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHH
Q 014350 257 NQRRIQCLKYLVLANMLMESEVNPFDGQ-E-AK-PYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY 333 (426)
Q Consensus 257 ~~~~~~~lky~~L~~lL~~~~~~~~~s~-~-~~-~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~ 333 (426)
.+....+..|.+|..+..+. ...|... . .. ....+|.+.....+..++.++++..|.+..++ ...|.+..+
T Consensus 95 ~~~~~ef~~y~lL~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~-----~~~~~l~~~ 168 (204)
T PF03399_consen 95 SPNEAEFIAYYLLYLLCQNN-IPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRS-----KSAPYLFAC 168 (204)
T ss_dssp -TTHHHHHHHHHHHTT-T----THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT------TTS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHccc-chHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-----cCCChHHHH
Confidence 34666777788887654432 1111111 0 00 02245777777889999999999999987722 244555444
Q ss_pred H-HHHHHHHHHHHHHHhcccccc-ccchhHHhHhCC
Q 014350 334 I-EDLLKNVRTQVLLKLIKPYTR-IRIPFISKELNV 367 (426)
Q Consensus 334 ~-~~L~~~l~~~~l~~i~~pYs~-I~l~~iA~~l~l 367 (426)
+ ..+...+|.+++..+...|.+ |+++.+++.|++
T Consensus 169 l~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 169 LMERFFNRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp HHGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 4 448899999999999999999 999999999874
No 85
>PRK12370 invasion protein regulator; Provisional
Probab=96.34 E-value=0.31 Score=51.80 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.+|++ ..++..++.++...|+++++.+++...+...
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----------------------- 402 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPIS----ADIKYYYGWNLFMAGQLEEALQTINECLKLD----------------------- 402 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------
Confidence 3567899999999999998865 3467888999999999999999999987775
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
|+. .. ....++..++..|++++|...++++..... + ++ ...+..
T Consensus 403 P~~-~~------------------------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p---~~-------~~~~~~ 446 (553)
T PRK12370 403 PTR-AA------------------------AGITKLWITYYHTGIDDAIRLGDELRSQHL-Q---DN-------PILLSM 446 (553)
T ss_pred CCC-hh------------------------hHHHHHHHHHhccCHHHHHHHHHHHHHhcc-c---cC-------HHHHHH
Confidence 330 00 011122344557888888888888765531 0 11 122333
Q ss_pred HHHHHHhhcCHHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a 208 (426)
...++...|++.+|...+.+.
T Consensus 447 la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 345666788888888887654
No 86
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.33 E-value=0.096 Score=50.25 Aligned_cols=188 Identities=19% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..++|++|++.+.+..+..++ ...+...+.++...|+|+++.+.+..+.... ... ...............
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~a~~~~~- 158 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-----PRYLLSALQLYYRLGDYDEAEELLEKLEELP--AAP--DSARFWLALAEIYEQ- 158 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHH-
T ss_pred ccccccccccccccccccccc-----cchhhHHHHHHHHHhHHHHHHHHHHHHHhcc--CCC--CCHHHHHHHHHHHHH-
Confidence 455677777776665544321 2445566677888888888888877765432 111 112222222222222
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ +.+...+.++.+++. ..+.. .+...++.++.+.|+++++.+++..+.+...+ + ...+..+
T Consensus 159 ~G-~~~~A~~~~~~al~~---~P~~~---~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-----~----~~~~~~l-- 220 (280)
T PF13429_consen 159 LG-DPDKALRDYRKALEL---DPDDP---DARNALAWLLIDMGDYDEAREALKRLLKAAPD-----D----PDLWDAL-- 220 (280)
T ss_dssp CC-HHHHHHHHHHHHHHH----TT-H---HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----S----CCHCHHH--
T ss_pred cC-CHHHHHHHHHHHHHc---CCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-----H----HHHHHHH--
Confidence 12 234455555555442 11111 23446788899999999999999999888632 2 1133322
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
...+..+|++.+|...++++.+..+ .+|.++ ..-|.++...|++.+|......++.
T Consensus 221 -a~~~~~lg~~~~Al~~~~~~~~~~p--~d~~~~----~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 221 -AAAYLQLGRYEEALEYLEKALKLNP--DDPLWL----LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHT-HHHHHHHHHHHHHHST--T-HHHH----HHHHHHHT-----------------
T ss_pred -HHHhccccccccccccccccccccc--cccccc----ccccccccccccccccccccccccc
Confidence 4578899999999999999866432 245443 2334555667788888877777654
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.32 E-value=0.51 Score=53.46 Aligned_cols=191 Identities=10% Similarity=0.031 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh------------hHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR------------NYSEK 95 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k------------~~~~k 95 (426)
..+++++|++.|++++...+... ....++.++.+.|+++++.+++...+..- +.... ...+.
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~-----a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNE-----DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 45678888888888765543321 23456677777777777777777665542 21110 11222
Q ss_pred HHHHHHHHhcCCCCC--------------ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHH
Q 014350 96 CINNIMDFVSGSASQ--------------NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (426)
Q Consensus 96 ~v~~il~~~~~~~~~--------------~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~e 161 (426)
+++.+-..+...|+. +.+.....++.+++. ..+ ......++|.++.+.|++++|.+.+++
T Consensus 595 Al~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd---~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPN---NSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 222222222222320 011112222221110 001 114557899999999999999999999
Q ss_pred HHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHH
Q 014350 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA 241 (426)
Q Consensus 162 l~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A 241 (426)
....-.. + .+++.....++...|++..|...++++....+. .+.+....|.+...+.++..|
T Consensus 669 AL~l~P~-----~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~------~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 669 AHKGLPD-----D-------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN------QALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHhCCC-----C-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CchhhhhhhHHHHHHHHHHHH
Confidence 9887431 2 245555567889999999999999998665432 223444455555555566666
Q ss_pred HHHHHHH
Q 014350 242 ATDFFEA 248 (426)
Q Consensus 242 ~~~f~ea 248 (426)
.+.+...
T Consensus 731 ~~~~~r~ 737 (987)
T PRK09782 731 HEEVGRR 737 (987)
T ss_pred HHHHHHH
Confidence 6655554
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.27 E-value=0.4 Score=52.08 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.+.+|.++|++.+.+||.+++.. +.++..|+.+|-++|+.++++..-..-..+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRN----PIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccc----hhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 35788999999999999998743 678899999999999988887665444433
No 89
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.27 E-value=0.19 Score=55.65 Aligned_cols=163 Identities=9% Similarity=-0.004 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh----------hhhHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV----------TRNYSEKCIN 98 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~----------~k~~~~k~v~ 98 (426)
.+++++|++.|+++++.++....-.......++..+.++|+++++.+++..+.... |.- +.........
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCCCCCCCchHHHHHH
Confidence 56799999999999877653311113455667778899999999999999887764 310 0101111111
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.....+....+ .+...+.++.++.. .... ..+...+|.++...|++++|.+.+++....-. ++
T Consensus 364 ~~a~~l~~~g~--~~eA~~~l~~al~~---~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-----d~---- 426 (765)
T PRK10049 364 LLSQVAKYSND--LPQAEMRARELAYN---APGN---QGLRIDYASVLQARGWPRAAENELKKAEVLEP-----RN---- 426 (765)
T ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CC----
Confidence 12222222111 33344444433331 1111 24567999999999999999999999988743 12
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.++....+..+...+++.+|...++.+.+..
T Consensus 427 ---~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 427 ---INLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2355555668889999999999998886543
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.27 E-value=0.15 Score=46.58 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..++++++..++..++.++++ ......++.+|...|+++++.+.|.+.....
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----SEQWALLGEYYLWRNDYDNALLAYRQALQLR 103 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456899999999999998866 4467889999999999999999999998886
No 91
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.26 E-value=0.025 Score=42.87 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=54.4
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
.+...+|.+|...|+|++|.+.+++....... .|. + .......+.....++...|++.+|..+++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~-~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQ-LGD-D---HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTT-H---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HCC-C---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45679999999999999999999999887332 232 2 2446777777788899999999999998888654
No 92
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.25 E-value=0.088 Score=39.34 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|++++|...+.+....... + . ..+.....++...+++.+|...++.+....... +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-----N----A---DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--A 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----c----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h
Confidence 567899999999999999999998776421 1 1 445556677888899999999988876543221 2
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
......|.++...+++..|...|..+..
T Consensus 69 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 ----KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred ----hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 3445566777888999999988887754
No 93
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.15 E-value=0.06 Score=43.71 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
.++++++|++.|..++...+++. ....+...++.++.+.|+++.+.+++..++... +. .
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~-------------------~ 72 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKST-YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PK-------------------S 72 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CC-------------------C
Confidence 45689999999999988766432 235678889999999999999999998887764 21 0
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
+. .. .....+|.++.+.|++++|...+.++.....
T Consensus 73 ~~-----~~--------------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 73 PK-----AP--------------------DALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred Cc-----cc--------------------HHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 11 00 1245778888999999999999999988854
No 94
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.39 Score=49.73 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=121.9
Q ss_pred HhHHHHhhcccCCCCHHHHHHHHHHHhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh-------
Q 014350 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV------- 88 (426)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~------- 88 (426)
+|-+||-. -+++++|-+.|.+....++. ...| ...|..+.-.|.-|+++..|..-.+++ ++-
T Consensus 317 aVg~YYl~----i~k~seARry~SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYl 386 (611)
T KOG1173|consen 317 AVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYL 386 (611)
T ss_pred hHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHH
Confidence 46677755 36788999999998877764 2345 345566667777777777666555554 321
Q ss_pred --------hhhHHHHHHHHHHHHhcCCCC------------CChhHHHHHHHHHHHHHHhhhhhhh-HHHHhHHHHHHHH
Q 014350 89 --------TRNYSEKCINNIMDFVSGSAS------------QNFSLLREFYQTTLKALEEAKNERL-WFKTNLKLCKIWF 147 (426)
Q Consensus 89 --------~k~~~~k~v~~il~~~~~~~~------------~~~~~~~~~~~~~l~~l~~~~~~kl-~~r~~~~La~~~~ 147 (426)
+-.-+.+-..+.+...+.-|- ........++..+++.++.+.++++ |-.+..+||+.+.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 222333334444443332221 1234567777888887877777775 8899999999999
Q ss_pred HhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 148 ~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
..+.|++|...++.....++. -++.+....-+|+.+||+.+|-..+.+|..+.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k------------~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPK------------DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCC------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999888642 34677777788999999999999999986654
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.46 Score=47.52 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
+.+|....++.|+..+.-..+|...-.-++-|++..|+-.++|++++++-+.=+..-+....+-.-+|+--++.+.+.-.
T Consensus 29 k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 45689999999999998777766666778899999999999999999977655554312222333333333332222110
Q ss_pred C--CCChhHHHHHHHHHHHHHHhhhhhh-hHHHHhHHHHHHHHHhccH
Q 014350 108 A--SQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEY 152 (426)
Q Consensus 108 ~--~~~~~~~~~~~~~~l~~l~~~~~~k-l~~r~~~~La~~~~~~g~~ 152 (426)
- +.-.-.+.+.++.+++. .+| .--|..++||++|.+.|+.
T Consensus 109 G~fdeA~~cc~rhLd~areL-----gDrv~e~RAlYNlgnvYhakGk~ 151 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFAREL-----GDRVLESRALYNLGNVYHAKGKC 151 (639)
T ss_pred cccchHHHHHHHHhHHHHHH-----hHHHhhhHHHhhhhhhhhhcccc
Confidence 0 00112334444444442 223 2237788999999998764
No 96
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.00 E-value=0.25 Score=41.36 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHH
Q 014350 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (426)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (426)
.|+.++..++++ ..++..++..+...|+++++.+.++.+.... |+ +.
T Consensus 5 ~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------p~-~~----- 51 (135)
T TIGR02552 5 TLKDLLGLDSEQ----LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----------------------PY-NS----- 51 (135)
T ss_pred hHHHHHcCChhh----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----------------------CC-cH-----
Confidence 456666666543 3456778888888888888888887766653 22 00
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcC
Q 014350 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (426)
Q Consensus 118 ~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d 197 (426)
.....+|..+...|++++|.+.++.......+ ..+.+.....++...|+
T Consensus 52 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 52 -------------------RYWLGLAACCQMLKEYEEAIDAYALAAALDPD------------DPRPYFHAAECLLALGE 100 (135)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHcCC
Confidence 01346677777778888888777776665321 12344444556677777
Q ss_pred HHHHHHHHHHHHhhh
Q 014350 198 NKKLKQLYQKALAIK 212 (426)
Q Consensus 198 ~~kak~~l~~a~~i~ 212 (426)
+.+|...++.+....
T Consensus 101 ~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 101 PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHhc
Confidence 877777777665543
No 97
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.99 E-value=0.27 Score=47.78 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++.++|+..|.+.++.++++ ..++..++.++...|+++++.+.+...+...
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456788888888888877654 4567778888888888888888888777764
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.92 E-value=0.19 Score=44.25 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=80.0
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|..+...|++++|...+.+......++ ......+.....++...|++..|...++++..+.+....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 35688999999999999999999998774321 112345566667899999999999999999776443322
Q ss_pred -hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 218 -p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
....+.+....|..+...++|..|..+|-+++..|..
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2334566666677777889999998888888776643
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.91 E-value=2.9 Score=44.25 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~ 220 (426)
.+|.-+.-.|+|..|.+++++..+.+.++.... .....+.++.+.++....|.+.+|...+..-. |.+
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~----~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--------~~i 215 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE----DYEHSELLLYQNQILIEAGSLQKALEHLLDNE--------KQI 215 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH----HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--------hHH
Confidence 556667778999999999999999875332221 25567888999899888888777776654431 122
Q ss_pred HH--HHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 221 MG--IIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 221 ~~--~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.. .+.+..|.+++..+++++|...|.--..
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 22 2345677888888999999877766543
No 100
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.91 E-value=0.35 Score=52.90 Aligned_cols=89 Identities=9% Similarity=-0.072 Sum_probs=44.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~ 219 (426)
.-+...+...|++++|.+++++.... + + .. ++-..+..|...|++..++.+.++.....+.. +
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~---p----~----~~---~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~--~- 528 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFK---P----T----VN---MWAALLTACRIHKNLELGRLAAEKLYGMGPEK--L- 528 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCC---C----C----HH---HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC--C-
Confidence 34566677777777777766543111 1 1 11 22333345666677777766655543221110 0
Q ss_pred HHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 220 IMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
..+...+.+|...|+|.+|.+.+.+.
T Consensus 529 ---~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 529 ---NNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred ---cchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 01222334555666676666655543
No 101
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=1.1 Score=45.70 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh----hhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT----RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~----k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 130 (426)
..|++++-+-.-.|++.++++-+..+.... ...+ -.+.+-.+..++..++-+-+. .+.....+ .+..+...
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGlys~sv~~-~enAe~hf---~~a~k~t~ 398 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLYSHSVNC-YENAEFHF---IEATKLTE 398 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhHhhhcch-HHHHHHHH---HHHHHhhh
Confidence 456777888888999999999999887775 3222 356667777777777653331 12222222 22222233
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
...+|.-++.+||-.|+..|+-+..-+++..+-..-+.+.+ .. .+.-.++....-+.+..+++.+||..+.+..+
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~s--sq---~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLS--SQ---RLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcch--HH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 44588889999999999998866555555555444222111 11 44556667777778889999999999998888
Q ss_pred hhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHH
Q 014350 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (426)
Q Consensus 211 i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~ 244 (426)
.+|+-.-.++.+-.-..-|.+....+|-.++.+-
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhc
Confidence 7766544566554445555555556655554433
No 102
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.38 Score=48.74 Aligned_cols=156 Identities=8% Similarity=0.151 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (426)
|...|++.|...|+.+|-| .|+-.-||+.|.-.+...=++-+|++-.... |. -..+-..+.+-+++...
T Consensus 379 Nt~AAi~sYRrAvdi~p~D----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-Pn-----DsRlw~aLG~CY~kl~~- 447 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRD----YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PN-----DSRLWVALGECYEKLNR- 447 (559)
T ss_pred ccHHHHHHHHHHHhcCchh----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CC-----chHHHHHHHHHHHHhcc-
Confidence 4456666666666666533 4555667777777777777777777766664 33 23345555555554322
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r 190 (426)
.+-.++-|..+...=+ +++ ....+||++|++.+++++|+..+.+..+.... .|.-+ ...++..+--.+
T Consensus 448 -~~eAiKCykrai~~~d--te~----~~l~~LakLye~l~d~~eAa~~yek~v~~~~~-eg~~~----~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 448 -LEEAIKCYKRAILLGD--TEG----SALVRLAKLYEELKDLNEAAQYYEKYVEVSEL-EGEID----DETIKARLFLAE 515 (559)
T ss_pred -HHHHHHHHHHHHhccc--cch----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hcccc----hHHHHHHHHHHH
Confidence 2223332222222100 111 23568999999999999999888777663211 12111 223444444557
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 014350 191 MYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~ 209 (426)
.+.+.+|+.+|-.+.+.+.
T Consensus 516 ~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhhcchHHHHHHHHHHh
Confidence 8889999999998866553
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.79 E-value=1.9 Score=47.59 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=68.2
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
+-+.+.++||.+.+..+++..|.+.+.++.++... -++.++--..+....++...|...+..+..+++
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~------------YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG------------YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch------------hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 44567789999999999999999999999999641 122222211122334678888888888876665
Q ss_pred cCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 214 ~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..+ . .+.+.|-.|+...+|.-|-..|.-++.
T Consensus 562 ~np--~----arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 562 SNP--N----ARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred CCc--H----HHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 433 2 344567777777788877777766654
No 104
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=0.15 Score=53.45 Aligned_cols=149 Identities=13% Similarity=0.199 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
++++.|.+.|++.+..++.+ .++..-+|.+|.++++++.|.-++++-+... |.. .+ ++..++..+.....
T Consensus 469 ee~d~a~~~fr~Al~~~~rh----YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~n---sv--i~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRH----YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSN---SV--ILCHIGRIQHQLKR 538 (638)
T ss_pred HHHHhHHHHHHhhhcCCchh----hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccc---hh--HHhhhhHHHHHhhh
Confidence 34566666666666665433 5677778899999999999999988887776 432 11 12222222211111
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
.+....+++.+.. .+.+--+ ..++-|.+++..|+|++|+..|++++.... ++. -++....
T Consensus 539 --~d~AL~~~~~A~~-----ld~kn~l-~~~~~~~il~~~~~~~eal~~LEeLk~~vP-----~es-------~v~~llg 598 (638)
T KOG1126|consen 539 --KDKALQLYEKAIH-----LDPKNPL-CKYHRASILFSLGRYVEALQELEELKELVP-----QES-------SVFALLG 598 (638)
T ss_pred --hhHHHHHHHHHHh-----cCCCCch-hHHHHHHHHHhhcchHHHHHHHHHHHHhCc-----chH-------HHHHHHH
Confidence 2233333333322 1222222 124677888888888888888888888864 221 3556666
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q 014350 190 QMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a 208 (426)
++|-..|+...|.--..-|
T Consensus 599 ki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHccchHHHHhhHHH
Confidence 7888888777766554444
No 105
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.76 E-value=0.075 Score=53.18 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=73.3
Q ss_pred ccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 014350 26 GLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 26 ~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (426)
.+.++++++|++.|.+.++.++++ ..++..++.+|...|++++++..+...+...
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------------------- 66 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELD--------------------- 66 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 356678999999999999988765 4678899999999999999999998887764
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
|+ +. ....++|.+++..|+|++|...+++....-.
T Consensus 67 --P~-~~------------------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 67 --PS-LA------------------------KAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred --cC-CH------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 32 00 0246889999999999999999999988743
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.66 E-value=0.025 Score=41.71 Aligned_cols=53 Identities=23% Similarity=0.425 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~~ 84 (426)
..+++++|++.|.+.++.++++ ..++..++.+|...| +++++++.+.+.++..
T Consensus 15 ~~~~~~~A~~~~~~ai~~~p~~----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKAIELDPNN----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTH----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 3567999999999999998764 568999999999999 7999999999887763
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.64 E-value=3.6 Score=43.54 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=85.5
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-- 214 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~-- 214 (426)
-++.-|++.|-..|+++.|..++...-..|+ -++|.++.-+|++.+.|+++.|-..++.++...+.
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTP------------TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTP------------TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCc------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 3556788999999999999999998877653 28899999999999999999999988887543221
Q ss_pred -C--------------CC-h------------------hHHH-HHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcch-
Q 014350 215 -I--------------PH-P------------------RIMG-IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ- 258 (426)
Q Consensus 215 -~--------------~~-p------------------~~~~-~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~- 258 (426)
+ .. . .++. =+..-+|..+...++|-.|.+-|.+++..|....+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dq 519 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQ 519 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 0 00 0 0011 011346778888899999999999997766543221
Q ss_pred --hHHHHHHHHHHHHH
Q 014350 259 --RRIQCLKYLVLANM 272 (426)
Q Consensus 259 --~~~~~lky~~L~~l 272 (426)
.-..|++.+.+++-
T Consensus 520 fDfhtyc~rk~tlrsY 535 (700)
T KOG1156|consen 520 FDFHTYCMRKGTLRSY 535 (700)
T ss_pred hhHHHHHHhcCcHHHH
Confidence 22444555555444
No 108
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.59 E-value=0.4 Score=44.43 Aligned_cols=154 Identities=13% Similarity=0.126 Sum_probs=105.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
+.++|+..|.+.+++.++.+++. ..+---++.+|-+.|..+.+-+.|.+-++.. |. -....++-..++..
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~----~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~-----~GdVLNNYG~FLC~ 115 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSY----YLAHLVRAHYYQKLGENDLADESYRKALSLA-PN-----NGDVLNNYGAFLCA 115 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CC-----ccchhhhhhHHHHh
Confidence 45778999999999999998854 3344456778899999999999999888775 43 24566777776664
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
.+ ..+....+++.+++ .. .-----+...+++-.....|+.+.|.+.++......... -...+
T Consensus 116 -qg-~~~eA~q~F~~Al~---~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------------~~~~l 177 (250)
T COG3063 116 -QG-RPEEAMQQFERALA---DP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------------PPALL 177 (250)
T ss_pred -CC-ChHHHHHHHHHHHh---CC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------------ChHHH
Confidence 22 23344444444333 11 111111445677888888899999999888888774321 13445
Q ss_pred HHHHHHHhhcCHHHHHHHHHHH
Q 014350 187 IEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a 208 (426)
...+.+...||+..|+.+++.-
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHH
Confidence 5668888889999999888764
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.52 E-value=0.15 Score=43.95 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
..++|..+...|++++|.+.++.......
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56889999999999999999999988764
No 110
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.50 E-value=0.021 Score=42.78 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=38.6
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~ 393 (426)
.|+.+++--.+++++.||..|++|++.+|.+|..+|..|+|.-.-+...
T Consensus 4 ~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 4 EIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 4567777788999999999999999999999999999999985544443
No 111
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=1.4 Score=45.09 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCC-cchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~-~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~ 215 (426)
.+..-.|.++.+++++++|.+.+...-..-....+. +. ..-++.--+...|+ .+|+.+|..++++|..+
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~---~~plV~Ka~l~~qw---k~d~~~a~~Ll~KA~e~---- 532 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN---AAPLVHKALLVLQW---KEDINQAENLLRKAIEL---- 532 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc---chhhhhhhHhhhch---hhhHHHHHHHHHHHHcc----
Confidence 445577899999999999998888777664332111 01 12233333443443 38999999999988654
Q ss_pred CChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 216 ~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+|+.- .-+...|.+...+++-.+|...|-++..
T Consensus 533 -Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 533 -DPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -CchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34321 2345667777888899999999998853
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.37 E-value=2.6 Score=46.13 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh----------------
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN---------------- 91 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~---------------- 91 (426)
.++++++|+=+|.++|..+|++ | +.+..=+.+|-+.|+...+++.+.++..+. |...--
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n--~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSN--W--ELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcc--h--HHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999988755 3 555666789999999999999999998887 522222
Q ss_pred -HHHHHHHHHHHHhcCCCC----CChhH------HHHHHHHHHHHHHhhhh------hhhH-------------------
Q 014350 92 -YSEKCINNIMDFVSGSAS----QNFSL------LREFYQTTLKALEEAKN------ERLW------------------- 135 (426)
Q Consensus 92 -~~~k~v~~il~~~~~~~~----~~~~~------~~~~~~~~l~~l~~~~~------~kl~------------------- 135 (426)
+.+.+++.+.+.++...+ .+... +.+.++.++..+...++ ..-|
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 224455555555542111 00111 12222233332222111 0001
Q ss_pred ----HHH-hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 136 ----FKT-NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 136 ----~r~-~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
+++ ...++-+.++.++..++.......+... -..-+++++...+.+...+.+..|-.++.....
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-----------~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW-----------VSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC-----------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 144 4566677777776666654443333322 134678888888888888999888888776532
Q ss_pred hhccCCChhH-HHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 211 IKSAIPHPRI-MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 211 i~~~~~~p~~-~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.|.. .+.+|.-.|..++..+.|++|..+|..+...
T Consensus 443 ------~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 443 ------REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred ------CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 1111 1567888899999999999999999888653
No 113
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=3.8 Score=41.84 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHHhcCCc---cchhhhHHHH---------HHH------------------HHHHHHhCCHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP---EKAEWGFKAL---------KQT------------------VKLYYRLGKYKEMMDAY 77 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~---~~~~~~~k~l---------~~l------------------~~l~~~~~~~~~l~e~~ 77 (426)
.+-|+++|+..|++|.+.+| ++++.-..+| ..| +.-|.-.++-+++..++
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 35589999999999999887 4433222222 122 22345566788999999
Q ss_pred HHHHHHhhhhh---------------hhhHHHHHHHHHHHHhcCCCC--------C------ChhHHHHHHHHHHHHHHh
Q 014350 78 REMLTYIKSAV---------------TRNYSEKCINNIMDFVSGSAS--------Q------NFSLLREFYQTTLKALEE 128 (426)
Q Consensus 78 ~~l~~~~~~~~---------------~k~~~~k~v~~il~~~~~~~~--------~------~~~~~~~~~~~~l~~l~~ 128 (426)
+.-+++. |.- +..++-.+.|..++.-+. | + ......-.++.+.++ .
T Consensus 354 kRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~--DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--k 428 (559)
T KOG1155|consen 354 KRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR--DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--K 428 (559)
T ss_pred HHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch--hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--C
Confidence 9888875 431 233444445555544321 1 0 001122222222221 0
Q ss_pred hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 129 ~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
.++.|+| .-||+.|...++.++|.+.+...-..... + + ..+....++|-.++|..+|..++.+.
T Consensus 429 PnDsRlw----~aLG~CY~kl~~~~eAiKCykrai~~~dt-----e---~----~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 429 PNDSRLW----VALGECYEKLNRLEEAIKCYKRAILLGDT-----E---G----SALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred CCchHHH----HHHHHHHHHhccHHHHHHHHHHHHhcccc-----c---h----HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1244455 46799999999999999999988777432 1 1 23344468899999999999999987
Q ss_pred Hhhhc--cCCCh-hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 209 LAIKS--AIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 209 ~~i~~--~~~~p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..... +.-+| .+.+.+. -+.++...+||++|..|-..+..
T Consensus 493 v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhc
Confidence 55432 22234 4444444 45677788899998877666643
No 114
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.31 E-value=0.12 Score=37.50 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
+.+|..+++.|+|++|.+.++++..... .-.+.+....+++...|++.+|...++++....
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3689999999999999999999988742 134666777788999999999999998876543
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.31 E-value=1.4 Score=45.79 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhh
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIK 212 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~-d~~kak~~l~~a~~i~ 212 (426)
+--.+..-||-+|.-.|+|+.|.+.++.....-.. | ..+|.-+-. .++-+ ....|-.+|.+|..+.
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-----d----~~lWNRLGA----tLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-----D----YLLWNRLGA----TLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-----h----HHHHHHhhH----HhcCCcccHHHHHHHHHHHhcC
Confidence 44466678899999999999999999988776331 2 234443322 22333 3688999999998765
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+.. +. .+.=.|+-++..|.|++|.++|++++.
T Consensus 495 P~y----VR--~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGY----VR--VRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred CCe----ee--eehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 442 22 233458889999999999999999975
No 116
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.23 E-value=0.26 Score=37.19 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh-hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 181 l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
...++.....++...|++.+|...++++..+.....+. ...+......|.++...++|.+|..+|.++++-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34566667788999999999999999998875445442 2346677788899999999999999999997643
No 117
>PLN03077 Protein ECB2; Provisional
Probab=95.19 E-value=1.7 Score=48.64 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=54.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~ 220 (426)
-+..-|...|+.++|.++++++...-..|+ . . .+..-+..|.+.|++.++..+++.......- .|.+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd---~------~--T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi--~P~~ 625 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPD---E------V--TFISLLCACSRSGMVTQGLEYFHSMEEKYSI--TPNL 625 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---c------c--cHHHHHHHHhhcChHHHHHHHHHHHHHHhCC--CCch
Confidence 456667777888888888888776533331 1 1 1122234577778888888877765432211 2222
Q ss_pred HHHHHHhhHHHhHHhhcHHHHHHHHHH
Q 014350 221 MGIIRECGGKMHMAERQWADAATDFFE 247 (426)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~e 247 (426)
..+.+....+...|++.+|.+.|.+
T Consensus 626 --~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 626 --KHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2345555666677888888766554
No 118
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.17 E-value=0.1 Score=44.87 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=59.3
Q ss_pred hHhHHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 014350 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (426)
Q Consensus 16 ~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (426)
++...|.+|+.. .++++++|++.|+.+...-+ -+++..++--.|+..|++.|+|+++...+..+++++ |.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~ 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PT 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 456778888764 55689999999999976665 356778999999999999999999999999999997 65
No 119
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.16 E-value=3.2 Score=46.23 Aligned_cols=161 Identities=7% Similarity=-0.001 Sum_probs=91.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHH
Q 014350 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 137 (426)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r 137 (426)
..-+.+.+++|+++.+++.+.+.++.. |..+ +.+. .++..+..... .+.....++.+. ...-.+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~-~av~----dll~l~~~~G~--~~~A~~~~eka~------~p~n~~~~ 103 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQS-GQVD----DWLQIAGWAGR--DQEVIDVYERYQ------SSMNISSR 103 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccch-hhHH----HHHHHHHHcCC--cHHHHHHHHHhc------cCCCCCHH
Confidence 334556677788888888877777665 3321 1122 22222211111 222333322222 11234445
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
...-+|.++...|+|++|.++++++...-.+ + .+++...+.++...++..+|...+.++.+....
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--- 168 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPT-----N-------PDLISGMIMTQADAGRGGVVLKQATELAERDPT--- 168 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---
Confidence 5566789999999999999999999888432 1 123334467788889999999988777544322
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.. .....+-++...+++.+|...|.+.++.
T Consensus 169 --~~--~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 169 --VQ--NYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred --hH--HHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 11 1111122222245665688888887664
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.15 E-value=0.35 Score=40.47 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|++++|...++.+..... .+ .+++......+...+++..|...++.+....+. ++
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-----YN-------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD--DP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Ch
Confidence 56889999999999999999999877632 11 234445556788899999999999988665322 12
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..+...|.++...+++..|...|..+.+.
T Consensus 86 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 86 ----RPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23455678888899999999999888764
No 121
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.13 E-value=0.29 Score=37.66 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=58.2
Q ss_pred HhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHh
Q 014350 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (426)
Q Consensus 148 ~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~ 227 (426)
+.|+|++|..++.++.....+ + . .-.+....++.++..|++.+|-.++++ .+... . .......
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~----~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~-~~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----N----P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----S-NPDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----T----H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----C-HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----C----h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----C-CHHHHHH
Confidence 478999999999999998542 1 1 223455567889999999999999877 33221 1 1223334
Q ss_pred hHHHhHHhhcHHHHHHHHHHH
Q 014350 228 GGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 228 ~g~~~~~~~~y~~A~~~f~ea 248 (426)
.|..+...++|.+|...|.++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 489999999999999988653
No 122
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=95.10 E-value=0.12 Score=52.21 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=95.6
Q ss_pred HHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCC--CCcccccccCCCcccHHHHH
Q 014350 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNP--FDGQEAKPYKNDPEILAMTN 300 (426)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~--~~s~~~~~~~~~~~~~~l~~ 300 (426)
..|+..+++.+..||..+=-++--+.+.-|.+........+.-|-+|+.|++.+..+. +-.......+.++.+..-.+
T Consensus 349 eVYEtHARIALEkGD~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~hAL~ 428 (540)
T KOG1861|consen 349 EVYETHARIALEKGDLEEFNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVAHALE 428 (540)
T ss_pred eeehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHHHHHH
Confidence 4566777777777776665555555555564444445778888999999988553321 10111111233555666668
Q ss_pred HHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHH-HHHHHHHHHHHHHHHhccccc-cccchhHHhHhCCC
Q 014350 301 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNY-IEDLLKNVRTQVLLKLIKPYT-RIRIPFISKELNVP 368 (426)
Q Consensus 301 L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~-~~~L~~~l~~~~l~~i~~pYs-~I~l~~iA~~l~l~ 368 (426)
+-.|...|+|..|...- ..-|-+..| ++.+.++-|..++..+++.|. +|+++.|++.|.+.
T Consensus 429 vR~A~~~GNY~kFFrLY-------~~AP~M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~ 491 (540)
T KOG1861|consen 429 VRSAVTLGNYHKFFRLY-------LTAPNMSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFD 491 (540)
T ss_pred HHHHHHhccHHHHHHHH-------hhcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhc
Confidence 88999999999998743 233444444 456789999999999999999 99999999988875
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.10 E-value=0.22 Score=37.03 Aligned_cols=85 Identities=21% Similarity=0.417 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|..+++..++. ..+...++.++...|+++++.+++....... |
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~ 65 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELD-----------------------P 65 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------------C
Confidence 457888999998888776543 2567778888888888888888877665543 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
. .. .....+|.++...|++++|.+.+.++...
T Consensus 66 ~--~~-----------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 D--NA-----------------------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred c--ch-----------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 1 00 12457788888899999998888877654
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.96 E-value=1.1 Score=39.22 Aligned_cols=130 Identities=8% Similarity=-0.006 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
.+.++..+-+.+.++++....+. ...++..++.++...|+++++...+...+...
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----------------------- 65 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE----------------------- 65 (168)
T ss_pred cccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----------------------
Confidence 34457788888888876554322 47788999999999999999999988776663
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
|+. . .. ..+..++|.++...|++++|...+......-... .+. ...+..++..
T Consensus 66 ~~~-~-~~--------------------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~---~~~--~~~la~i~~~ 118 (168)
T CHL00033 66 IDP-Y-DR--------------------SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL---PQA--LNNMAVICHY 118 (168)
T ss_pred ccc-h-hh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHH--HHHHHHHHHH
Confidence 110 0 00 0024688999999999999999999888763221 111 1223334444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~ 209 (426)
..+.+...|++..|...++++.
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHH
Confidence 4555667778777776666653
No 125
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.91 E-value=8.3 Score=43.33 Aligned_cols=219 Identities=10% Similarity=-0.000 Sum_probs=132.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchh-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHhc
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAE-WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVS 105 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~-~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k-~~~~k~v~~il~~~~ 105 (426)
..+++++|...+...++..+.... ...-++..++.++...|+++.+...+...+... ..... .........+.....
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~-~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA-RQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhhcchHHHHHHHHHHHHHHH
Confidence 467899999999998875432222 134566778899999999999999999988775 32211 111112222222221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhhhH--HHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNERLW--FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~--~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
. .+ +.+.....++.+++..+.......+ ..+...+|.++...|++++|...+.+......... + .....
T Consensus 543 ~-~G-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~----~~~~~ 613 (903)
T PRK04841 543 A-QG-FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---P----QQQLQ 613 (903)
T ss_pred H-CC-CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---c----hHHHH
Confidence 1 12 2445566666666654432211111 12334678999999999999999988876543211 1 12334
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-Ch--------------------------------------hHHHHH
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HP--------------------------------------RIMGII 224 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~-~p--------------------------------------~~~~~i 224 (426)
.+....+++...|++..|...+..+..+..... .. ......
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 455566788899999999888887754422111 00 000011
Q ss_pred HHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhc
Q 014350 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (426)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (426)
....|.++...+++.+|...|.++.......+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 22455667778899999999988876544434
No 126
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=3.3 Score=38.65 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=60.6
Q ss_pred hHHhhcHHHHHHHHHHHHhhhhhhcch----hHHHHHHHHHHHHHhhCCCCCC---CC-ccccc-ccCCCcccHHHHHHH
Q 014350 232 HMAERQWADAATDFFEAFKNYDEAGNQ----RRIQCLKYLVLANMLMESEVNP---FD-GQEAK-PYKNDPEILAMTNLI 302 (426)
Q Consensus 232 ~~~~~~y~~A~~~f~ea~~~~~~~~~~----~~~~~lky~~L~~lL~~~~~~~---~~-s~~~~-~~~~~~~~~~l~~L~ 302 (426)
....++|..|..-|-+.-. ...+++ .....+.-..||-+-..+.++. +. -++.- .|...++...++.|+
T Consensus 164 aa~leqY~~Ai~iyeqva~--~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVAR--SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 3345677777776666532 223332 1223333455555532233321 00 01111 244456788999999
Q ss_pred HHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHH
Q 014350 303 AAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLK 339 (426)
Q Consensus 303 ~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 339 (426)
.+....|...|.+....|...-+.|.+.-.++-.+.+
T Consensus 242 ~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~ 278 (288)
T KOG1586|consen 242 DAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKK 278 (288)
T ss_pred HHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 9999999999999999887766666655444433333
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.82 E-value=0.12 Score=38.41 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++++++|++.++.++..+|++ ...+...+.++++.|+++++.+.+...+..-
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4678999999999999998864 4567778999999999999999999998875
No 128
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.81 E-value=1.6 Score=44.35 Aligned_cols=17 Identities=0% Similarity=-0.228 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHhcC
Q 014350 29 ETDPEGALAGFAEVVAM 45 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~ 45 (426)
.+|+++|++.+....+.
T Consensus 200 ~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKA 216 (409)
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 44566666666666544
No 129
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.72 E-value=4.5 Score=40.12 Aligned_cols=224 Identities=14% Similarity=0.149 Sum_probs=143.3
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh-------hhhhHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSEKCINNIM 101 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------~~k~~~~k~v~~il 101 (426)
+.+++.||....+++++-.+ ....|+.|..+++...++|.|++++.+-..-.....+. ..+-..++.-+.+.
T Consensus 19 s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999998876533 33468999999999999999998886533222221011 12333444444444
Q ss_pred HHhc---------CCCCC--------------ChhHHHHHHHHHHHHHHhh------hhhh-hHHHHhHHHHHHHHHhcc
Q 014350 102 DFVS---------GSASQ--------------NFSLLREFYQTTLKALEEA------KNER-LWFKTNLKLCKIWFDMGE 151 (426)
Q Consensus 102 ~~~~---------~~~~~--------------~~~~~~~~~~~~l~~l~~~------~~~k-l~~r~~~~La~~~~~~g~ 151 (426)
++-. ..|+. +...-.-.++.+++.++.+ +.++ +=+++..-|+.+|-...|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 3322 13431 1122244556666666642 1222 444888899999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCcchhhhhhH-HHHHHHHHHHH-HhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhH
Q 014350 152 YGRMSKILKELHKSCQREDGTDDQKKGSQL-LEVYAIEIQMY-TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGG 229 (426)
Q Consensus 152 ~~~A~~ll~el~~~~~~~~~~~d~~~~~~l-~e~~l~e~rl~-~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g 229 (426)
|++|+-+..+....+..- +.+|- +.+ --+.+.-|-+. ..+|.+.-|++..+.+.++.-...+..+++.--.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~-~l~d~---~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSY-GLKDW---SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred hhHHhhhhHhHHHHHHhc-CcCch---hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999988887776665432 22231 222 12233333333 3457788899999888877654455666777778889
Q ss_pred HHhHHhhcHHHHHHHHHHHHhhhhhhcc
Q 014350 230 KMHMAERQWADAATDFFEAFKNYDEAGN 257 (426)
Q Consensus 230 ~~~~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (426)
.+|-..++-+.|..-|-+++.+-...++
T Consensus 254 DIyR~~gd~e~af~rYe~Am~~m~~~gd 281 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMGTMASLGD 281 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999887666665
No 130
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.71 E-value=4.4 Score=41.12 Aligned_cols=190 Identities=8% Similarity=0.047 Sum_probs=94.1
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
...++++.|.+.|.+..+.+++. .+ ...+ ..+.++...|+++++.+.+..+.+.. |..+ ...+-+...+..
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~-~~-~~~l-~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~-----~al~ll~~~~~~ 199 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADND-QL-PVEI-TRVRIQLARNENHAARHGVDKLLEVA-PRHP-----EVLRLAEQAYIR 199 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcc-hH-HHHH-HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH-----HHHHHHHHHHHH
Confidence 55677888888888887665532 11 1111 23788888888888888888887775 4322 112222222222
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhh--hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKN--ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~--~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~ 184 (426)
..+ .+...++++...+...-..+ .++-.+....+........+-+...+.++++-+... ...+.
T Consensus 200 ~gd--w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~------------~~~~~ 265 (398)
T PRK10747 200 TGA--WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR------------HQVAL 265 (398)
T ss_pred HHh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh------------CCHHH
Confidence 112 33334433433321100001 001111111222222222233334444444433221 12456
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 185 ~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
...-++.....|+..+|...++++.+. -.+|.+...+ |. +..+++.++......-
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~~l~----~~--l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLVLLI----PR--LKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHH----hh--ccCCChHHHHHHHHHH
Confidence 666778899999999999999887652 2345332111 11 1236777765554443
No 131
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.68 E-value=0.5 Score=43.81 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=84.6
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.+.+.||-=|++.|++..|.+-+++....- .. -...++...-+|...|..+.|...+++|.++.+.-.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps-----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-------PS-----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cc-----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 346788999999999999999999998872 21 234556666789999999999999999977653311
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~ 274 (426)
. .+.-++ -..+.++.|.+|...|..+...+.-. .....+..+++|++=.
T Consensus 104 --d---VLNNYG-~FLC~qg~~~eA~q~F~~Al~~P~Y~---~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 104 --D---VLNNYG-AFLCAQGRPEEAMQQFERALADPAYG---EPSDTLENLGLCALKA 152 (250)
T ss_pred --c---hhhhhh-HHHHhCCChHHHHHHHHHHHhCCCCC---CcchhhhhhHHHHhhc
Confidence 1 233344 34457889999999999997654321 2234567899999843
No 132
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.56 E-value=0.29 Score=35.87 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIK 212 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~-d~~kak~~l~~a~~i~ 212 (426)
...+|..++..|+|++|...+.+...... .-.+++......+...| ++.+|...++++.+++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDP------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHST------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46788999999999999999998888732 12456677777888888 6888888888876553
No 133
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.38 E-value=4.1 Score=43.34 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+|..+|...+..+++..+.. ...--..+++.+....++.+..++.+-+..- + +.--.-|.+ -++++..
T Consensus 597 agdv~~ar~il~~af~~~pns----eeiwlaavKle~en~e~eraR~llakar~~s-g--TeRv~mKs~--~~er~ld-- 665 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNS----EEIWLAAVKLEFENDELERARDLLAKARSIS-G--TERVWMKSA--NLERYLD-- 665 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCc----HHHHHHHHHHhhccccHHHHHHHHHHHhccC-C--cchhhHHHh--HHHHHhh--
Confidence 357778888888877776632 1222334678888888888888776665431 1 011111111 2222221
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+.+...++++.+++. --.|.++.+.+|+++++.++.+.|-+-+..-.+.|... +-+.+.-
T Consensus 666 --~~eeA~rllEe~lk~------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------------ipLWllL 725 (913)
T KOG0495|consen 666 --NVEEALRLLEEALKS------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------------IPLWLLL 725 (913)
T ss_pred --hHHHHHHHHHHHHHh------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC------------chHHHHH
Confidence 123344444444442 12466788899999999999999988777777777532 1234455
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
+++--..|+..||+.++++++.-+++. ..++.-+..+....|+-..|......++..+..
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKN------ALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCc------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 677778889999999999997554331 124455555556667777777777777654433
No 134
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=3.4 Score=43.30 Aligned_cols=153 Identities=16% Similarity=0.255 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
+.+++|++.+... +.+ + -+.+.-=++++++.|+|++++..|+.|.+-..+. .-+...-+++......+.
T Consensus 93 nk~Dealk~~~~~-~~~--~----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd----~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKGL-DRL--D----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD----QDEERRANLLAVAAALQV 161 (652)
T ss_pred ccHHHHHHHHhcc-ccc--c----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHhhhH
Confidence 3456666666522 211 1 2334444788999999999999999986654111 122222222222221111
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
. +.+ .+..+.+ --..+.++.|-++.+.|+|.+|.++|+.....|.+.-..+|. +.+-.+--+.-+
T Consensus 162 ---~----~~q----~v~~v~e--~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~--~eEeie~el~~I 226 (652)
T KOG2376|consen 162 ---Q----LLQ----SVPEVPE--DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDT--NEEEIEEELNPI 226 (652)
T ss_pred ---H----HHH----hccCCCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccc--chhhHHHHHHHH
Confidence 0 000 0000000 011345788899999999999999999995555432111111 112222223333
Q ss_pred H-----HHHhhcCHHHHHHHHHHH
Q 014350 190 Q-----MYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 190 r-----l~~~~~d~~kak~~l~~a 208 (426)
| ++...|+..+|..+|...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHH
Confidence 3 345669999999987765
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=4.8 Score=38.02 Aligned_cols=195 Identities=13% Similarity=0.086 Sum_probs=125.9
Q ss_pred cccCCCCHHHHHHHHHHHhcCCcc--chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014350 25 KGLVETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (426)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (426)
+.....++++-++.+.++++..+. -++...-.++++.-.....|+.+.|..++..|+..+ |. ..++.++---.++
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~--S~RV~~lkam~lE 97 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PG--SKRVGKLKAMLLE 97 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CC--ChhHHHHHHHHHH
Confidence 456677899999999999876542 233356789999999999999999999999999988 54 3344444433444
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHH
Q 014350 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (426)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~ 182 (426)
.... .+-..+.|+..++ ++-.-.-+..|..-+....|+--+|.+-+.+..+.... |.
T Consensus 98 a~~~-----~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-----D~------- 154 (289)
T KOG3060|consen 98 ATGN-----YKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-----DQ------- 154 (289)
T ss_pred Hhhc-----hhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-----cH-------
Confidence 3332 3345666665444 11111112224445556678777888888877777642 32
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHH---HHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII---RECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 183 e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i---~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
|...+-+.+|+..++|.+|-=-++...-+++ ..|...+++ +...|- ..|+..|.++|-.+.+.
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P--~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQP--FNPLYFQRLAEVLYTQGG----AENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHh
Confidence 3444455689999999999888887644332 135444332 333332 45888889888888763
No 136
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.26 E-value=1 Score=43.96 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH
Q 014350 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (426)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~ 136 (426)
-.|++++|...|.+..+-..+++.++.+ +.+ .+=-.+.++-..+++ | .....+|...++..- --+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~-~~~---dTfllLskvY~ridQ-P----~~AL~~~~~gld~fP------~~V 290 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHP---DTFLLLSKVYQRIDQ-P----ERALLVIGEGLDSFP------FDV 290 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC-Cch---hHHHHHHHHHHHhcc-H----HHHHHHHhhhhhcCC------chh
Confidence 3689999999999999999999998876 432 111122223333332 2 244444444444211 011
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
....-.|+++++.|++++|.+++..+.+.- ..-+|-+++..--|+--++.+.|-.+|++.... ++.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--G~~ 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLH------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQM--GAQ 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC------------CccceeeeeeeeccccCCChHHHHHHHHHHHHh--cCC
Confidence 223477899999999999999999998872 224566666555677778888888888877543 345
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
.|.+..-| |+-++....|.-+...|.-+..+.+
T Consensus 357 speLf~Ni----gLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 357 SPELFCNI----GLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred ChHHHhhH----HHHHHhhcchhhhHHHHHHHHhhcc
Confidence 56543333 3444556677777778877766544
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.22 E-value=2 Score=37.59 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.+.+|..+.+.|++++|..+.+-+-..- ..-.+.+..-.-.+-.+|++.+|-..|..+-.+... +|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--dp 103 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--AP 103 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 5789999999999999999998887772 123345555556688899999999999998766543 33
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
+ .....|..++..|+...|.+.|..+....
T Consensus 104 ~----~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 Q----APWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3 23466788888999999999999997654
No 138
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.21 E-value=2.9 Score=45.00 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHhhh-hhhhH----HHHhHHHHHHHH-HhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHH
Q 014350 112 FSLLREFYQTTLKALEEAK-NERLW----FKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~-~~kl~----~r~~~~La~~~~-~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~ 185 (426)
.+.--+++.+++.|++.+. +.++. +++.++||.+++ +..+++.|...|++-...+... +- + ..+....
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~-~----d~k~~~~ 103 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RL-T----DLKFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ch-H----HHHHHHH
Confidence 4555667777777777654 33333 378899999987 6789999999999998888752 21 2 3345555
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchh
Q 014350 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (426)
Q Consensus 186 l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (426)
...++++...+-.. |...+++.........+....-.++.....+++..+|+..|.+.+..........+++.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 55578888887766 88888876544443332222222333333344334899999999988876555556553
No 139
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.11 E-value=0.89 Score=39.08 Aligned_cols=93 Identities=15% Similarity=0.024 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~ 219 (426)
..+|..+...|++++|...++.+...... ..+.+.....++...|++..|...++++....+..+
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~--- 92 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPW------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP--- 92 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---
Confidence 35789999999999999999998766321 235666677889999999999999999977654322
Q ss_pred HHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 220 IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
......|..+...|++.+|...|..+..
T Consensus 93 ---~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 93 ---EPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344567778889999999999999865
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.07 E-value=0.63 Score=46.57 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=72.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~ 219 (426)
...|.-.+..|+|++|.+++.+....... + .+.+...+..+...|++..|...++++..+...
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-----~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----- 68 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPN-----N-------AELYADRAQANIKLGNFTEAVADANKAIELDPS----- 68 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----
Confidence 45678888999999999999999887321 1 245566677889999999999999988765432
Q ss_pred HHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 220 IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
....+...|.++...++|.+|...|..+..
T Consensus 69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 69 -LAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 122455668889999999999999999875
No 141
>PLN03077 Protein ECB2; Provisional
Probab=94.04 E-value=2.4 Score=47.49 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
++.++|.+.|... . ++ ..++..++..|.+.|+.+++.+++.++... +. ... ......++..+.....
T Consensus 538 G~~~~A~~~f~~~-~--~d-----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~-~Pd--~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 538 GRMNYAWNQFNSH-E--KD-----VVSWNILLTGYVAHGKGSMAVELFNRMVES--GV-NPD--EVTFISLLCACSRSGM 604 (857)
T ss_pred CCHHHHHHHHHhc-C--CC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCC--cccHHHHHHHHhhcCh
Confidence 4556666666554 1 11 234455666666666666666666665532 11 111 1123334444433111
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKEL 162 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el 162 (426)
.+...++++...+ .. .-.--.....-+...+...|++++|.++++++
T Consensus 605 --v~ea~~~f~~M~~---~~-gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 605 --VTQGLEYFHSMEE---KY-SITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred --HHHHHHHHHHHHH---Hh-CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 1222222221110 00 00011123345666777777777777777665
No 142
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.03 E-value=0.14 Score=32.79 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
++.+|+.+|.+.|+|+++.++|++.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999987664
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.89 E-value=1.4 Score=42.07 Aligned_cols=103 Identities=10% Similarity=0.168 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~k 133 (426)
...+.....+..+.|+|+++.+.|..+++.. |+.. ....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----------------------P~s~--~a~~---------------- 181 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----------------------PDST--YQPN---------------- 181 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------------------cCCc--chHH----------------
Confidence 3456666667777899999999988887775 3311 0000
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
..+.||..|+..|+|++|...++.+...-.+. ...-+.++....++...|++.+|+..++...+
T Consensus 182 ----A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ----ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24689999999999999999999998765432 11334444455667788999999998887643
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=1.9 Score=40.89 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH-Hh-hhcc----
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA-LA-IKSA---- 214 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a-~~-i~~~---- 214 (426)
.=|.++...|++++|.+.+...-. ++. ....+.+++-.-|+-.+.+-+.++...-+.+ .+ .+.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~--------lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~l 182 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGEN--------LEA--AALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKL 182 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccch--------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 456789999999999887765211 221 1333444444444444444444443332221 00 1110
Q ss_pred -CCChhHHHHHH--------------HhhH--HHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCC
Q 014350 215 -IPHPRIMGIIR--------------ECGG--KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE 277 (426)
Q Consensus 215 -~~~p~~~~~i~--------------~~~g--~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~ 277 (426)
.....++..++ ...| ..|+..++|.+|-....++.... +.....|-.+++|+.+.+.+
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-----~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-----AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHhCCC
Confidence 00112222221 1223 46778999999999999997643 23346788999999887654
Q ss_pred CCC---CCcccccccCCCcccHHHHHH
Q 014350 278 VNP---FDGQEAKPYKNDPEILAMTNL 301 (426)
Q Consensus 278 ~~~---~~s~~~~~~~~~~~~~~l~~L 301 (426)
... +-++.. ..+|+.++.+++
T Consensus 258 ~~~~~r~l~QLk---~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 258 AEVTERNLSQLK---LSHPEHPFVKHL 281 (299)
T ss_pred hHHHHHHHHHHH---hcCCcchHHHHH
Confidence 221 222221 235677766654
No 145
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=0.37 Score=45.66 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
.|-.|-++ +.+|+.+|...|++-++..|+. ..+..+..=|++.++.+|+++.+.+.|-...+-+ +.-+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~--------- 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSP--------- 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCC---------
Confidence 56667665 4557999999999999988743 3467889999999999999999999998887766 4311
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
+.|+ ..++||....+.|+-++|...|+++-+.-.+
T Consensus 213 -------KApd----------------------------allKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 213 -------KAPD----------------------------ALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred -------CChH----------------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 1233 1679999999999999999999999998754
No 146
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=6 Score=36.99 Aligned_cols=99 Identities=13% Similarity=0.169 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHH--HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 112 FSLLREFYQTTLKALEEAKNERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~~~kl~~--r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
.+....-|+.+-+..+. ++-.-. ++.++-|.+--..|+|.+|.++++++-...- +..-...-+.=|+...
T Consensus 130 ~ekaI~~YE~Aae~yk~--ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~------~n~LLKys~KdyflkA 201 (288)
T KOG1586|consen 130 FEKAIAHYEQAAEYYKG--EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL------DNNLLKYSAKDYFLKA 201 (288)
T ss_pred HHHHHHHHHHHHHHHcc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cchHHHhHHHHHHHHH
Confidence 44555566655554332 222111 6788999999999999999999999988753 3211122244456666
Q ss_pred HHHHhh-cCHHHHHHHHHHHHhhhccCCCh
Q 014350 190 QMYTET-KNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 190 rl~~~~-~d~~kak~~l~~a~~i~~~~~~p 218 (426)
-+|+-- .|..-++..+++-....+++.+.
T Consensus 202 gLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 202 GLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 676555 78888888877776666665543
No 147
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=93.71 E-value=7.8 Score=38.24 Aligned_cols=182 Identities=13% Similarity=0.053 Sum_probs=100.7
Q ss_pred cccchhhHhHHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhH-HHHHHH---------------------------
Q 014350 10 SDEFTVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGF-KALKQT--------------------------- 60 (426)
Q Consensus 10 ~~~~~~~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~-k~l~~l--------------------------- 60 (426)
|+--.++....+.-++.+ ..+-+..|+..|+..|+.++++-...| |+...|
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 333334445556666665 455689999999999998874311111 111111
Q ss_pred --HHHHHHhCCHHHHHHHHHHHHHHhhhhh-------hh----hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 014350 61 --VKLYYRLGKYKEMMDAYREMLTYIKSAV-------TR----NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 127 (426)
Q Consensus 61 --~~l~~~~~~~~~l~e~~~~l~~~~~~~~-------~k----~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~ 127 (426)
+.++.++|.++.+..-+..++.-- +.. ++ ..--..++++..++.. .| -...++++..++++.-
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~-~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD--~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE-PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GD--CQNAIEMITHLLEIQP 186 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC-CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-Cc--hhhHHHHHHHHHhcCc
Confidence 345566677777766666665543 211 11 1111122333333321 12 2344555555555433
Q ss_pred hhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014350 128 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (426)
Q Consensus 128 ~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~ 207 (426)
|. ..+..--|+-|...|+...|..-+..+.+.+++ ..|.+...++++...||...+...++.
T Consensus 187 Wd------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D------------nTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 187 WD------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD------------NTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred ch------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc------------chHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 31 123345577788888888888888887777542 234555556777777877777666666
Q ss_pred HHhhhc
Q 014350 208 ALAIKS 213 (426)
Q Consensus 208 a~~i~~ 213 (426)
+.+.++
T Consensus 249 CLKldp 254 (504)
T KOG0624|consen 249 CLKLDP 254 (504)
T ss_pred HHccCc
Confidence 666543
No 148
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.67 E-value=2.3 Score=38.10 Aligned_cols=111 Identities=13% Similarity=0.168 Sum_probs=76.1
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhh
Q 014350 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (426)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 129 (426)
.+....++..++..|.+.|+.+.+++.|...+.+- ..++..+.-.++.+--.+.. .+ .......++.+...++..
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~-~d--~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFF-GD--WSHVEKYIEKAESLIEKG 106 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHh-CC--HHHHHHHHHHHHHHHhcc
Confidence 34578999999999999999999999999998884 33455555555444333332 23 667778888777776653
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
.+-..--|+..--|-.++..|+|.+|++++-+....
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 332222244444455667789999999887777543
No 149
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=10 Score=39.31 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh--h--hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--V--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~ 128 (426)
..+++..++..|.+.++++.++++|.+.++-+ +. . ..+..++.+..-...-.-.|+ .
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe----~-------------- 357 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEH-RTPDLLSKLKEAEKALKEAERKAYINPE----K-------------- 357 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChh----H--------------
Confidence 45566667778888888888888887765554 22 0 111111111111111100011 0
Q ss_pred hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 129 ~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
..-...-|.-++..|+|.+|...+.+.-+.-. +|. -.|..-.--|+++++++.|..-.+++
T Consensus 358 -------A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-----~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 358 -------AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-----EDA-------RLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred -------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-----chh-------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 01122338889999999999999999666532 232 23344334467888888887765555
Q ss_pred HhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 209 ~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
... .++.+.+-++ .|.++...++|.+|...|.++.+
T Consensus 419 ieL----~p~~~kgy~R--Kg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 419 IEL----DPNFIKAYLR--KGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred Hhc----CchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 2233444443 48888899999999999999865
No 150
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.39 E-value=7.9 Score=42.33 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (426)
+.+|+...+..+...+.+ ..++..|+.+..+.|+++++..++..++.+. |....+.....- ++-....
T Consensus 68 ~~~~~~~~~~~~~~~~~~----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~--~L~~~~~----- 135 (694)
T PRK15179 68 PAAALPELLDYVRRYPHT----ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLR--GVKRQQG----- 135 (694)
T ss_pred hHhhHHHHHHHHHhcccc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHH--HHHHhcc-----
Confidence 455555555554443322 6788899999999999999999999999987 653322222111 1111110
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHH
Q 014350 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl 191 (426)
.+.....++..+ +...+. ......+|..+-+.|+|++|.++++++...- + ++. +.++.-...
T Consensus 136 ~eeA~~~~~~~l---~~~p~~---~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p---~~~-------~~~~~~a~~ 197 (694)
T PRK15179 136 IEAGRAEIELYF---SGGSSS---AREILLEAKSWDEIGQSEQADACFERLSRQH--P---EFE-------NGYVGWAQS 197 (694)
T ss_pred HHHHHHHHHHHh---hcCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--C---CcH-------HHHHHHHHH
Confidence 111111112111 111111 1234678888888888888888888887731 1 221 344444556
Q ss_pred HHhhcCHHHHHHHHHHHHhh
Q 014350 192 YTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 192 ~~~~~d~~kak~~l~~a~~i 211 (426)
....|+...|...++++...
T Consensus 198 l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66778888888888877543
No 151
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=5.9 Score=41.58 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhcCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-TRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~-~k~~~~k~v~~il~~~~~~~~~ 110 (426)
+..|++.+...-+..+++ .+-++--++++.+.+|+|+.|++.+..++..+.+.+ .-...-.+|..+...+..+.+
T Consensus 357 ~~ka~e~L~~~~~~~p~~---s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~- 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEK---SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD- 432 (652)
T ss_pred HhhhHHHHHHHhccCCch---hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC-
Confidence 566777777775555443 245666788999999999999999997665543333 233444566666666665555
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHh-HHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTN-LKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~-~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
......+..-+..+.+...-++.-+++. ..+|.+.+..|+-++|..+|+++.+...
T Consensus 433 -~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 433 -NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred -CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 3345566555555555444445555554 5888999999999999999999999754
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=92.67 E-value=3.3 Score=42.00 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
..-||+++...++-.+|..++.+...... .+ .+++..|++.++..+++..|....+++-...+.-
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-----~d-------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~--- 267 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENP-----QD-------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE--- 267 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---
Confidence 34578888888888889888888886632 11 5677788889999999988888877775443221
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHH
Q 014350 219 RIMGIIRECGGKMHMAERQWADAA 242 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~ 242 (426)
-.-|..-+.+|...++|+.|.
T Consensus 268 ---f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 268 ---FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred ---HHHHHHHHHHHHhcCCHHHHH
Confidence 124555677888889999887
No 153
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.59 E-value=21 Score=39.98 Aligned_cols=201 Identities=9% Similarity=0.031 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHhc---CCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 32 PEGALAGFAEVVA---MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 32 ~~~Ai~~~~~ii~---~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+.|+..+..++. ..|+......++..--+-.+...|++.++.+.|+.|..-- .-..+++...| .+.+-...
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~--~~~P~y~~~a~---adayl~~~ 341 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG--YKMPDYARRWA---ASAYIDRR 341 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC--CCCCHHHHHHH---HHHHHhcC
Confidence 4778999999887 4343322335566666777888999999999999997442 11234444444 23222211
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhh-hhHHHH--hHHHHHHHHHhccHHHHHHHHHHHHhhccc-C--CCCcchhhhhhHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNE-RLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQR-E--DGTDDQKKGSQLL 182 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~-kl~~r~--~~~La~~~~~~g~~~~A~~ll~el~~~~~~-~--~~~~d~~~~~~l~ 182 (426)
..+....+|..+.. ...+. .....+ ...|.--|.+.|+|++|..++.++.....- - .|...+..+..-.
T Consensus 342 --~P~kA~~l~~~~~~---~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 342 --LPEKAAPILSSLYY---SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred --CcHHHHHHHHHHhh---ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 12345555554322 11110 111122 357788899999999999999999884330 0 0100111123345
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 183 e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
+.....+..+...||+.+|...+++.....++ ++. +....+.++...+++.+|...+-.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~----l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA--NQN----LRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77788888899999999999999987655432 233 3445667777888999999888554
No 154
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.43 E-value=3.1 Score=45.42 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+.+++|+..+..+++..|+. ..+....+.++.+.++++++++.+.+.+..- +.-......+. .++..+..
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a--~~l~~~g~-- 169 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDS----SEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA--KSWDEIGQ-- 169 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH--HHHHHhcc--
Confidence 457899999999999998865 5677888999999999999999999998886 43222221111 12333322
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
.+.....|+.++. +...+. .....+|..+...|+.++|...+++.-...
T Consensus 170 ---~~~A~~~y~~~~~--~~p~~~----~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 170 ---SEQADACFERLSR--QHPEFE----NGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred ---hHHHHHHHHHHHh--cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4567777776665 111111 235688999999999999999999988774
No 155
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=92.15 E-value=0.3 Score=37.21 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEE
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLL 396 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v 396 (426)
.++.++.-+.+++...||..|+.|++-||.+|.+++.-|++.-.-....|+.
T Consensus 6 qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~ 57 (78)
T PRK15431 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCL 57 (78)
T ss_pred HHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCC
Confidence 3566777789999999999999999999999999999999975543544554
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=7 Score=39.40 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCCh
Q 014350 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (426)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (426)
..|+..+..++..... ....+++--.=++++.-.|+++.+...-...++. .+.++-+--||..+-++.. +.
T Consensus 149 anal~~~~~~~~s~s~-~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~~----~~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSR-EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYND----NA 219 (486)
T ss_pred hhhhhhhhcccccccC-CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhccccccccc----ch
Confidence 3455555555443321 1334555555578899999999998766666555 3667777777777766643 13
Q ss_pred hHHHHHHHHHHHHHHhhhhh-hhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 113 SLLREFYQTTLKALEEAKNE-RLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 113 ~~~~~~~~~~l~~l~~~~~~-kl~~-----r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
+.....++..+..=...+.- ..+. .....-|+-.+..|+|.+|.+.+.+-.....+ ...-...+|.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------n~~~naklY~ 291 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------NKKTNAKLYG 291 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------ccchhHHHHH
Confidence 34444444444321111111 1222 23346678889999999999999999887432 1233566778
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
....+.+++|+...|-.-.+.+.++.+. -+. -....|..|+..++|.+|.++|-.++.+-
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~s----yik--all~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSS----YIK--ALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888999988888877777665422 111 23455677888899999999999998753
No 157
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.67 E-value=14 Score=39.55 Aligned_cols=201 Identities=19% Similarity=0.224 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+.++.|-.+|.+.-...+ +.|+...-+.+.+-+++.++++.++...++.+ +...|-.. |.-++.+
T Consensus 631 n~e~eraR~llakar~~sg-----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~l--mlGQi~e------ 696 (913)
T KOG0495|consen 631 NDELERARDLLAKARSISG-----TERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWL--MLGQIEE------ 696 (913)
T ss_pred cccHHHHHHHHHHHhccCC-----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHH--HHhHHHH------
Confidence 3457888888877643321 45677777778888888888888888777776 65443221 1111211
Q ss_pred CCChhHHHHHHHHHHHHH----Hhhhhh-hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 109 SQNFSLLREFYQTTLKAL----EEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l----~~~~~~-kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
..+.++.+++.- +.|.+. -+| +-|+++-+..|+...|-.+|..-+..-.+ -..
T Consensus 697 ------~~~~ie~aR~aY~~G~k~cP~~ipLW----llLakleEk~~~~~rAR~ildrarlkNPk------------~~~ 754 (913)
T KOG0495|consen 697 ------QMENIEMAREAYLQGTKKCPNSIPLW----LLLAKLEEKDGQLVRARSILDRARLKNPK------------NAL 754 (913)
T ss_pred ------HHHHHHHHHHHHHhccccCCCCchHH----HHHHHHHHHhcchhhHHHHHHHHHhcCCC------------cch
Confidence 122233333321 111111 133 35677777788888888888877776421 124
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhh--ccC---------CCh----hHHHHHH---------HhhHHHhHHhhcHH
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIK--SAI---------PHP----RIMGIIR---------ECGGKMHMAERQWA 239 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~--~~~---------~~p----~~~~~i~---------~~~g~~~~~~~~y~ 239 (426)
++++-+|+-++.||...|..++.+|..-- +++ ++| .-+..++ ..-|.++..+++|.
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 66777788888888888888777763211 111 011 1112233 23457788899999
Q ss_pred HHHHHHHHHHhhhhhhcchhHHHHHHH
Q 014350 240 DAATDFFEAFKNYDEAGNQRRIQCLKY 266 (426)
Q Consensus 240 ~A~~~f~ea~~~~~~~~~~~~~~~lky 266 (426)
+|..-|.-+...-...|+ .|..+++|
T Consensus 835 kar~Wf~Ravk~d~d~GD-~wa~fykf 860 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNGD-AWAWFYKF 860 (913)
T ss_pred HHHHHHHHHHccCCccch-HHHHHHHH
Confidence 999999998664333343 34444443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=91.61 E-value=2.3 Score=37.48 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+++++|++.|+++++..++. .+...++..++.++...|+++++.+++.+.+...
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 456778888887777654421 1234567777777788888877777776665553
No 159
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=91.57 E-value=0.16 Score=41.12 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=35.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
.=|+++.|++.|++++++|+..|-.|+.+|.|+-.||.
T Consensus 64 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 64 EGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 46999999999999999999999999999999999985
No 160
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.51 E-value=7.9 Score=32.85 Aligned_cols=122 Identities=15% Similarity=0.255 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
.|..+..-+......|+.+...+.+...+...++. ++...++ ..+... .++. -.
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~---------------~l~~~~~--~~W~~~----~r~~-----l~ 58 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGD---------------FLPDLDD--EEWVEP----ERER-----LR 58 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SS---------------TTGGGTT--STTHHH----HHHH-----HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCC---------------CCCCCCc--cHHHHH----HHHH-----HH
Confidence 46666666666677777777777777776665222 1211111 011111 1111 12
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
..++.+..+++..+.+.|++++|..+++.+...-+- ++ +.+..-|+.+...|+...|...+.+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E--------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----DE--------EAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----H--------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CH--------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 346677789999999999999999999999888321 12 466667789999999999999999875443
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=13 Score=35.26 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh-hhhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKNER 133 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~k 133 (426)
|+.+-=+.++-..|+|++|.++|..++.-- |.....+. |++.-.- ..+.+.+...++.+ .++. .++--
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K----RKlAilk--a~GK~l~aIk~ln~----YL~~F~~D~E 155 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK----RKLAILK--AQGKNLEAIKELNE----YLDKFMNDQE 155 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHH----HHHHHHH--HcCCcHHHHHHHHH----HHHHhcCcHH
Confidence 444444667888999999999999998774 43222222 3332222 23433333333322 2221 12222
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhhh
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~-~~d~~kak~~l~~a~~i~ 212 (426)
.| ..||.+|+..|+|++|.=.++++.-..+. ..+.---+.+.++... ..|+.-++.++.++.+++
T Consensus 156 AW----~eLaeiY~~~~~f~kA~fClEE~ll~~P~----------n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 156 AW----HELAEIYLSEGDFEKAAFCLEELLLIQPF----------NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HH----HHHHHHHHhHhHHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 33 57899999999999999999999766432 2243444444444332 357888999999887765
Q ss_pred c
Q 014350 213 S 213 (426)
Q Consensus 213 ~ 213 (426)
+
T Consensus 222 ~ 222 (289)
T KOG3060|consen 222 P 222 (289)
T ss_pred h
Confidence 3
No 162
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.50 E-value=7.9 Score=35.14 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
..|||++.++.|++++|++.|..++.... .....++ ...++...||-..|+..|+++....
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w----------~~~~~el---rGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW----------AAIVAEL---RGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH----------HHHHHHH---hhhHHHHcCchHHHHHHHHHHHHcc
Confidence 57999999999999999999988765522 1222222 2237889999999999999996653
No 163
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.47 E-value=1.4 Score=37.51 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..+++++|++.++..+..+|-+ ..+...++.+|...|+...+++.|..+...+
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYD----EEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4578999999999999998743 5778899999999999999999999998887
No 164
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.39 E-value=10 Score=39.01 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHH
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~ 204 (426)
+.+|+.+...|++++|..+|......-.+ | ..-|.. -.+.|...||..++...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~-----d----p~~w~~---LAqay~~~g~~~~a~~A 430 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPE-----D----PNGWDL---LAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC-----C----chHHHH---HHHHHHHhCchHHHHHH
Confidence 47888888889998888888877766331 2 222333 23567777777766664
No 165
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.37 E-value=13 Score=35.13 Aligned_cols=151 Identities=12% Similarity=0.170 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~k 133 (426)
..-+.+=+.--.+.|+|++|..++..+...+ |..+. ..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----------------------p~s~~--~~----------------- 71 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----------------------PFSPY--SE----------------- 71 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------CCCcc--cH-----------------
Confidence 4445555555667899999999988887665 33111 11
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH---HHHhhcCHHHHHHHHHHHHh
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ---MYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r---l~~~~~d~~kak~~l~~a~~ 210 (426)
+..+.++..++..|+|++|...+.+....-.+.+.. ... -.+...+. +-...+|...++.++..-.+
T Consensus 72 ---qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~------dY~-~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~ 141 (254)
T COG4105 72 ---QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA------DYA-YYLKGLSYFFQIDDVTRDQSAARAAFAAFKE 141 (254)
T ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh------hHH-HHHHHHHHhccCCccccCHHHHHHHHHHHHH
Confidence 135788899999999999999999999987654322 111 12122122 12234677888888887777
Q ss_pred hhccCCC----hhHHHHH----------HHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhc
Q 014350 211 IKSAIPH----PRIMGII----------RECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (426)
Q Consensus 211 i~~~~~~----p~~~~~i----------~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~ 256 (426)
+....|+ |..+.++ -..-|.+|...+.|..|...|.+..++|....
T Consensus 142 ~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 142 LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 6665553 3333222 25677899999999999999999999886543
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.28 E-value=24 Score=39.57 Aligned_cols=136 Identities=16% Similarity=0.197 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH-------------HHHHHHhcCCCCCChhHHH
Q 014350 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI-------------NNIMDFVSGSASQNFSLLR 116 (426)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v-------------~~il~~~~~~~~~~~~~~~ 116 (426)
....+.+..+|+.++...|+++++.+.+...+... |.-...+.-..+ -.+++.+...+. .....
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~--~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLK--WAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccc--hhHHH
Confidence 34568999999999999999999999998877776 433322222222 022222222111 11222
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 014350 117 EFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 196 (426)
Q Consensus 117 ~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~ 196 (426)
.++. ++....+.+ .....||..|-..|++++|...++++.+...+ + ...+.-++. .+...
T Consensus 104 ~~~~----~i~~~~~~k---~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-----n----~~aLNn~AY---~~ae~- 163 (906)
T PRK14720 104 HICD----KILLYGENK---LALRTLAEAYAKLNENKKLKGVWERLVKADRD-----N----PEIVKKLAT---SYEEE- 163 (906)
T ss_pred HHHH----HHHhhhhhh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-----c----HHHHHHHHH---HHHHh-
Confidence 2222 221112222 24568999999999999999999999999532 2 233344433 22233
Q ss_pred CHHHHHHHHHHH
Q 014350 197 NNKKLKQLYQKA 208 (426)
Q Consensus 197 d~~kak~~l~~a 208 (426)
|+.+|..++.+|
T Consensus 164 dL~KA~~m~~KA 175 (906)
T PRK14720 164 DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHH
Confidence 899999999887
No 167
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.15 E-value=6 Score=38.75 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-HhcCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD-FVSGSASQ 110 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~-~~~~~~~~ 110 (426)
|..|+..|.+.++.-|.+ ..-+-.++.++-..+++++++++|+..++.. +.. -.+++ ..... ++++
T Consensus 272 P~~AL~~~~~gld~fP~~----VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~n-vEaiA---cia~~yfY~~---- 338 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFD----VTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PIN-VEAIA---CIAVGYFYDN---- 338 (478)
T ss_pred HHHHHHHHhhhhhcCCch----hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Ccc-ceeee---eeeeccccCC----
Confidence 555555555555554432 2234445677888888888888888888875 321 11111 00011 1222
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r 190 (426)
+.+....+|-.++.. .+.+..+|. ++|---+-.++|+-++..++..+...+.+ ....++.-....
T Consensus 339 ~PE~AlryYRRiLqm--G~~speLf~----NigLCC~yaqQ~D~~L~sf~RAlstat~~---------~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 339 NPEMALRYYRRILQM--GAQSPELFC----NIGLCCLYAQQIDLVLPSFQRALSTATQP---------GQAADVWYNLGF 403 (478)
T ss_pred ChHHHHHHHHHHHHh--cCCChHHHh----hHHHHHHhhcchhhhHHHHHHHHhhccCc---------chhhhhhhccce
Confidence 233455555544432 122333332 22222223455565555555555443321 223445444445
Q ss_pred HHHhhcCHHHHHHHHHHHH
Q 014350 191 MYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~ 209 (426)
+..-.||+.-|+..+.-+.
T Consensus 404 vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred eEEeccchHHHHHHHHHHh
Confidence 5556666666666555554
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.12 E-value=16 Score=35.52 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHH
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMD 75 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e 75 (426)
+-.|+|..+|.... +-..++ +-......-+.+.+..+|+++..+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~---~~~~e~~~~~~Rs~iAlg~~~~vl~ 56 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSP---ENKLERDFYQYRSYIALGQYDSVLS 56 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTC---HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCc---hhHHHHHHHHHHHHHHcCChhHHHH
Confidence 34577888887766 322222 1134455566777888888776543
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.06 E-value=4.9 Score=33.54 Aligned_cols=63 Identities=21% Similarity=0.132 Sum_probs=49.1
Q ss_pred HHhhcccC-CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 21 SILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 21 ~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
|..|-.+. .+++++|+..|++.++...+ +.-..+++.+++..+...|+++++...++....-+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44444443 35799999999999886533 23357899999999999999999999998876654
No 170
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=90.70 E-value=0.72 Score=32.99 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 343 ~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
...|+.+++.-..++++++|+.||+|+..+...|..|-..|. |.+.-|-+.+.
T Consensus 2 ~~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~----i~r~~GG~~~~ 54 (57)
T PF08220_consen 2 QQQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGL----IKRTHGGAVLN 54 (57)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC----EEEEcCEEEeC
Confidence 345677777789999999999999999999999999999886 44455544443
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.55 E-value=0.83 Score=33.20 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=41.1
Q ss_pred HHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 147 ~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
.+.|+|++|.++++++.....+ -.++.+.-+++++..|++.+|+..+.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5789999999999999888432 2345556678899999999999998876543
No 172
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=0.45 Score=43.93 Aligned_cols=62 Identities=15% Similarity=0.277 Sum_probs=54.1
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC--chhhHHH
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR--SAYLTFL 408 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~--~~~~~~~ 408 (426)
+.|++.-+.|.|.++|..|||-.+++-.-+-.++.+|.|.|.||--.+.|.+..+ .++.-||
T Consensus 206 v~YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~eEl~AVAkfI 269 (299)
T KOG3054|consen 206 VEYIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISMEELAAVAKFI 269 (299)
T ss_pred HHHHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecHHHHHHHHHHH
Confidence 4577777899999999999999999999999999999999999999999999876 4445555
No 173
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.26 E-value=21 Score=35.60 Aligned_cols=193 Identities=11% Similarity=0.111 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHH---H
Q 014350 31 DPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV----TRNYSEKCINNI---M 101 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~----~k~~~~k~v~~i---l 101 (426)
.++.|++.|++.++... +|.-.-.+++..++.++...+|+++++-+..+-..+.++-. .-.+-..+.=.+ +
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 36889999999887543 33323478899999999999999999877666655542211 111111111111 1
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhH
Q 014350 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l 181 (426)
-.....-| -.+...+-.+.+++ .++.-++.|+..-+|+||...|+.+.|-.-+++.-...... .|+ .--
T Consensus 217 R~~G~Lgd-A~e~C~Ea~klal~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~---gdr---mgq 285 (518)
T KOG1941|consen 217 RLLGRLGD-AMECCEEAMKLALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL---GDR---MGQ 285 (518)
T ss_pred HHhccccc-HHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh---hhh---HHH
Confidence 11111111 12334444444333 34555888999999999999999766654444433322211 122 112
Q ss_pred HHHH------HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHh
Q 014350 182 LEVY------AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE 235 (426)
Q Consensus 182 ~e~~------l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~ 235 (426)
++.. +...|+..+..| =++.++.++...+.+.+....++-++..-.+.+|-..
T Consensus 286 v~al~g~Akc~~~~r~~~k~~~-Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~ 344 (518)
T KOG1941|consen 286 VEALDGAAKCLETLRLQNKICN-CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSK 344 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 2222 333344333333 4566666677667666666555555665555666443
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.89 E-value=0.4 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=27.6
Q ss_pred HHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHH
Q 014350 39 FAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (426)
Q Consensus 39 ~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~ 74 (426)
|++.|+.+|++ ..++.+++.+|...|+++++.
T Consensus 2 y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN----AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhc
Confidence 67778888765 688999999999999999985
No 175
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=89.61 E-value=1.5 Score=32.25 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=44.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 142 La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
|..+|...++|++|.+.++.+....++ -...+.....++...|++..|...++.+.+..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888899999999999888887431 22455556677888888988888888876544
No 176
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=28 Score=36.06 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHhhh---hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 113 SLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 113 ~~~~~~~~~~l~~l~~~~---~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
.++...|+.+..-.+.+. .+.++ -...|+-..+..++++++....++..+.... ..|++..-.
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~--~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------------~~Evy~~fA 469 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAY--AYIQLCCALYRQHKIAESMKTFEEAKKKFPN------------CPEVYNLFA 469 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CchHHHHHH
Confidence 444555555444444321 11122 2346777777888999999999999888753 235555556
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhcc---CC---ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHH
Q 014350 190 QMYTETKNNKKLKQLYQKALAIKSA---IP---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~i~~~---~~---~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~ 263 (426)
++....+++.+|...|+.|...-+. +. .|.+...+-... -.+|+..|.+....+.+ -+|+...+
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-----wk~d~~~a~~Ll~KA~e-----~Dpkce~A 539 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-----WKEDINQAENLLRKAIE-----LDPKCEQA 539 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-----hhhhHHHHHHHHHHHHc-----cCchHHHH
Confidence 6777888999999999988655443 11 254443333222 22677777777666643 33443333
Q ss_pred HHHHHHHHHh
Q 014350 264 LKYLVLANML 273 (426)
Q Consensus 264 lky~~L~~lL 273 (426)
|..++.+.
T Consensus 540 --~~tlaq~~ 547 (606)
T KOG0547|consen 540 --YETLAQFE 547 (606)
T ss_pred --HHHHHHHH
Confidence 66666663
No 177
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.22 E-value=0.71 Score=28.18 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
++-+++.++.+.|+++++.+.++.++...
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 57789999999999999999999998876
No 178
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=24 Score=34.79 Aligned_cols=124 Identities=12% Similarity=0.198 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHH
Q 014350 68 GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 147 (426)
Q Consensus 68 ~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~ 147 (426)
..-+.+.+.|..+..-++..++.-...++.-.+.+.+. | .+...++.+.+.+.++...+.--..++....|++++
T Consensus 52 ~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~---D--~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L 126 (380)
T KOG2908|consen 52 QAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQIS---D--KDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL 126 (380)
T ss_pred ccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhc---c--HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 34567788888887776566665555555545555444 3 334555555555555554444345566678889999
Q ss_pred HhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHH
Q 014350 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (426)
Q Consensus 148 ~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~k 200 (426)
..||..++.+.+.+.+......++. +. +.---++..-+++|-..||++-
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v-~~---~Vh~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGV-TS---NVHSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCC-Ch---hhhhhHHHHHHHHHHHHHhHHH
Confidence 9999999999999999987766554 31 4456677777888888888763
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.07 E-value=3.2 Score=41.77 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 31 DPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
..+.|.+.|++-++.-. .|....-|++-+++..|+-.|+|++++++-+.=+.+-+.--.+++--.+-.++.+..-=.
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl- 248 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL- 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-
Confidence 34677788887776543 345556899999999999999999999887766666422223444333333333321111
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
.+.+...+.|..++.......+.-.=....+-||+.|.-..+|++|.++-+.=...
T Consensus 249 -g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 249 -GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred -cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 13567788888888765554444455566788999999899999998776655544
No 180
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.87 E-value=0.73 Score=29.41 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
..+||.+|.+.|+|++|.+++++......
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 35899999999999999999999776554
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.84 E-value=10 Score=38.49 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
..++.|++.|+++.+.+++ +..-+++++...++-.++.+.+.+.++.. +.- ..++..-.+++-...+
T Consensus 183 ~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d-----~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQD-----SELLNLQAEFLLSKKK 249 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCC-----HHHHHHHHHHHHhcCC
Confidence 4588999999998777653 23347888888888888888888877654 221 3333333333322111
Q ss_pred CChhHHHHHHHHHHHHHHhhhhh-hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 110 QNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~-kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
++.++++.+.+.+- ---++.-..||+.|...|+|++|+-.|....-.+
T Consensus 250 ---------~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 ---------YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred ---------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 24444444432211 1222334578999999999999998887766553
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=88.75 E-value=6 Score=34.62 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.+++++|.+.|+-+...++ |.+.-...++-+|-..|+|+++++.|......
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp----~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDA----WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred CCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4579999999999988876 34777899999999999999999999988655
No 183
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=88.56 E-value=21 Score=40.03 Aligned_cols=125 Identities=8% Similarity=0.097 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
++.++|+..|+++++.++++ .-++++++-.|... +.++|.+++.+....+ +.+....++..---.++...|+
T Consensus 130 g~~~ka~~~yer~L~~D~~n----~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~ 201 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDN----PEIVKKLATSYEEE-DKEKAITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSD 201 (906)
T ss_pred CChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcc
Confidence 45778888888888877654 55778888888777 8888888777765553 1122222222222223333333
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
+.++...+.+..+. .......+-+...|-..|.+.++|+++..+|..+...-+
T Consensus 202 -d~d~f~~i~~ki~~----~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 202 -DFDFFLRIERKVLG----HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred -cchHHHHHHHHHHh----hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 12232222222222 111222334445666788888999999999999999844
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.46 E-value=14 Score=31.79 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~ 219 (426)
.+-|.-.++.|+|.+|.+.++.|....... ...-...+..+-.|+..+++..|...+++=.+..+. ||.
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--hp~ 82 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFG---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--HPN 82 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CCC
Confidence 455666778999999999999998875432 112234455557799999999999998876665433 333
Q ss_pred HHHHHHHhhHHHhHHhhc
Q 014350 220 IMGIIRECGGKMHMAERQ 237 (426)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~ 237 (426)
+-- .....|+.++....
T Consensus 83 vdY-a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 83 VDY-AYYMRGLSYYEQDE 99 (142)
T ss_pred ccH-HHHHHHHHHHHHhh
Confidence 221 22344555554443
No 185
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=88.43 E-value=1.2 Score=30.38 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=33.6
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.|+.++.--..++..+||+.+|+|...+-..+-+|...|.|.
T Consensus 7 ~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 7 KILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 444555556679999999999999999999999999999873
No 186
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.42 E-value=1.3 Score=27.17 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+++..++.+++..|+++++.+++.+.+...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 567889999999999999999999988774
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=88.16 E-value=18 Score=31.97 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.+..|.=++..|+|++|..+.+=+-..-. -+ .++.+--.-.+..+++|.+|-..+..|-.+...-|.|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-----~n-------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDF-----YN-------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 56788889999999999999888876521 11 2344444556788899999999998875554333334
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
. .++|.-++..++-..|..+|..+...
T Consensus 108 ~------f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 108 V------FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred c------chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 3 45678888899999999999999774
No 188
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=87.87 E-value=16 Score=34.57 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=63.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHh
Q 014350 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 139 (426)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~ 139 (426)
.++..+..|++..+...+.+....- +.-.+......+ +++.... .+....-|..+++.. .++. .+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga--aldq~Gr-----~~~Ar~ay~qAl~L~---~~~p---~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA--ALDQLGR-----FDEARRAYRQALELA---PNEP---SIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH--HHHHccC-----hhHHHHHHHHHHHhc---cCCc---hhh
Confidence 5566666666666666666555543 332222222222 2222221 222333333333321 1111 235
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l 205 (426)
.+|+-.+.-.|+++.|..++.+.+-.-. .|. -+.-.-.++....||+..|+.+.
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~-----ad~-------~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPA-----ADS-------RVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCC-----Cch-------HHHHHHHHHHhhcCChHHHHhhc
Confidence 6899999999999999999988876632 121 12222334566788888888753
No 189
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.82 E-value=30 Score=34.27 Aligned_cols=203 Identities=16% Similarity=0.134 Sum_probs=114.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchh---h--------hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh--hhhhhHH
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAE---W--------GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS--AVTRNYS 93 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~---~--------~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~--~~~k~~~ 93 (426)
++++.+++|+.-|..+++.+++.+. - .-..+.+.++-++-.|+...+.+.++.++..- + .-...+-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 5678899999999999998873211 0 11234444566777888888888888887762 2 1112222
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH---HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCC
Q 014350 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF---KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (426)
Q Consensus 94 ~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~---r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~ 170 (426)
+++. +.. + +.+..+-+ .+. ..|+-- ...++.+++++..|+..+++..+++-.+.-.+
T Consensus 196 akc~------i~~--~---e~k~AI~D-lk~------askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd-- 255 (504)
T KOG0624|consen 196 AKCY------IAE--G---EPKKAIHD-LKQ------ASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD-- 255 (504)
T ss_pred HHHH------Hhc--C---cHHHHHHH-HHH------HHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc--
Confidence 2222 110 1 01111111 000 001111 12468889999999999999999998887321
Q ss_pred CCc--chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC----------------hhHHHHH--------
Q 014350 171 GTD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH----------------PRIMGII-------- 224 (426)
Q Consensus 171 ~~~--d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~----------------p~~~~~i-------- 224 (426)
+.. .--+..-++.-.+.-+.-....++|..+.+..++..+..+..+. ...-..|
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 100 00112234555566666677778888888887777655543210 0001111
Q ss_pred --------HHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 225 --------RECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 225 --------~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..--+..|+.+..|..|...|..+.+
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 12234566677788888888877754
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.38 E-value=16 Score=30.49 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=73.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
+.+.+|..+-..|+.++|..++++....- . ++ ....+..+.-...+..+|++.+|...++.+..- .++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L---~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--L---SG----ADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---Cc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCC
Confidence 45678889999999999999999997752 1 12 223445555566788999999999999877432 233
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+.....+....+......+++++|.+.+..++-
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445555566677788999999999988753
No 191
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.17 E-value=23 Score=38.50 Aligned_cols=101 Identities=12% Similarity=0.156 Sum_probs=58.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhh----hhhhhH
Q 014350 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA----KNERLW 135 (426)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~kl~ 135 (426)
-+..+.+.|++|.+..+|..-.-.. ..+.-+--++--.+.+..++++++ .......|....+.-... ..+++|
T Consensus 712 wg~hl~~~~q~daainhfiea~~~~-kaieaai~akew~kai~ildniqd--qk~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCLI-KAIEAAIGAKEWKKAISILDNIQD--QKTASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhHH-HHHHHHhhhhhhhhhHhHHHHhhh--hccccccchHHHHHhccchhHHHHHHHH
Confidence 3566778899999998887765554 334333344444445555555455 234445555433321111 134555
Q ss_pred H--HHhHHHHHHHHHhccHHHHHHHHHHHH
Q 014350 136 F--KTNLKLCKIWFDMGEYGRMSKILKELH 163 (426)
Q Consensus 136 ~--r~~~~La~~~~~~g~~~~A~~ll~el~ 163 (426)
. .+...-..+|-+.|+|..|.++-.+.+
T Consensus 789 ~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 789 TEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 5 233466677888899999887766554
No 192
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=16 Score=35.34 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=85.9
Q ss_pred hHhHHHHhhcccCCC-CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014350 16 SRVLCSILEKGLVET-DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (426)
Q Consensus 16 ~~~~~~~~ak~~~~~-~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (426)
++...+++|+.+.+. |..+|...|.......+++ ..+.-.++.++...|+.+.+...+..+-.-. ..+.+..
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~ 205 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHG 205 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHH
Confidence 456677888877665 6999999999998877654 4567789999999999999998887763221 1222222
Q ss_pred HHHHHHHHHh---cCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 95 KCINNIMDFV---SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 95 k~v~~il~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
++.-++.+ ...|+ ......-+. .. ---...-+.||..+...|++++|++.|-.+.+....
T Consensus 206 --l~a~i~ll~qaa~~~~--~~~l~~~~a-------ad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 206 --LQAQIELLEQAAATPE--IQDLQRRLA-------AD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred --HHHHHHHHHHHhcCCC--HHHHHHHHH-------hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 33333333 33343 111111111 00 001123569999999999999999988888877543
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.84 E-value=1.9 Score=26.67 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+++..+|.+|...|+++++.+.+++.+++-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999988874
No 194
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.75 E-value=32 Score=33.44 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHhcC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVSG 106 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~~~~ 106 (426)
+..+..||+.+..-.+..+. +.-.|.-++-+|+...++..+.++|.+|...+ |... +-+-+.++=+..-.-+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY~A~i~AD- 96 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLYKACIYAD- 96 (459)
T ss_pred HhhHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHhcccHH-
Confidence 44589999999887666542 35568889999999999999999999998877 6432 2222222211111000
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhh-hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~-~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~ 185 (426)
... ++.-..+ +.+.-++..--+.+.++.||+..+..++.++..+- ++ +.+
T Consensus 97 --------ALr-------V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------~A-------d~~ 147 (459)
T KOG4340|consen 97 --------ALR-------VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------EA-------DGQ 147 (459)
T ss_pred --------HHH-------HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------cc-------chh
Confidence 000 1111111 12222333334667788888888877777765442 11 222
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 186 l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
....-+.+..|++..|..-...+..+. -+.|.+- .--+..|...++|..|.++-.|+.+
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvs--GyqpllA----YniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVS--GYQPLLA----YNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhc--CCCchhH----HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333344556677776666555554432 1233221 1223556678888888888888754
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.52 E-value=6.8 Score=37.79 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
....|+.=+-=..+.++|.+|++.|+.-+.+. |. +++==+-|... +.+.. ....-++-|.. ...-+
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~---nAVyycNRAAA--y~~Lg-----~~~~AVkDce~---Al~iD 145 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PT---NAVYYCNRAAA--YSKLG-----EYEDAVKDCES---ALSID 145 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cchHHHHHHHH--HHHhc-----chHHHHHHHHH---HHhcC
Confidence 35556666666677777777777777777665 32 11111110000 00000 00011111111 11233
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
-.|.|...||+..|+..|+|.+|.+.+++....
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 456677889999999999999999988877766
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=8.9 Score=38.49 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcc---hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d---~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
..-|+.|+..|+|..|..-+...........+.++ +.-...++-+++..+-.++++++|..|....+++....
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---- 287 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD---- 287 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC----
Confidence 45677888888888888777775554432222211 22224456677777777889999998888777765432
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+.+.|-++ .|..++..++|..|...|..+..
T Consensus 288 ~~N~KALyR--rG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 288 PNNVKALYR--RGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred CCchhHHHH--HHHHHHhhccHHHHHHHHHHHHH
Confidence 234455444 37888889999999999999965
No 197
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.98 E-value=2.3 Score=26.16 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+++..++.+|.+.|+++++.+++.+.+..-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999999998874
No 198
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.86 E-value=2.1 Score=27.50 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..++.+++.+|...|+++++.+++.+.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5688999999999999999999999998886
No 199
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.71 E-value=15 Score=33.46 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.+.+|+-+.+.|++++|..-|+.....+. |+. -..++.. -..|+.+..|.+..|...++. +-++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~--lk~l~~l--RLArvq~q~~k~D~AL~~L~t-------~~~~ 155 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTK-----DEN--LKALAAL--RLARVQLQQKKADAALKTLDT-------IKEE 155 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccch-----hHH--HHHHHHH--HHHHHHHHhhhHHHHHHHHhc-------cccc
Confidence 47999999999999999999988877754 231 1222232 234667777777766665443 3344
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
...+.+-...|.+++..|+=.+|...|-.+....
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5556677888999999999999999999987754
No 200
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=85.53 E-value=1.8 Score=32.14 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=36.1
Q ss_pred HHHHHhcccccc--ccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 344 QVLLKLIKPYTR--IRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 344 ~~l~~i~~pYs~--I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
..|+.++..-.. ++..+||+.+|++...|.+.|.+|...|.+.-
T Consensus 9 ~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 9 EKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 344555554444 99999999999999999999999999999854
No 201
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.03 E-value=1.9 Score=27.64 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=25.7
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~ 169 (426)
.+..+||..|...|++++|..++++........
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 346799999999999999999999998876543
No 202
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.78 E-value=2.1 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.482 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
.+++|.++...|++++|.+.++++....+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 56899999999999999999999988753
No 203
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=53 Score=34.10 Aligned_cols=221 Identities=14% Similarity=0.148 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHH--------------HHHHhhh------hhhh
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE--------------MLTYIKS------AVTR 90 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~--------------l~~~~~~------~~~k 90 (426)
+...|-..+.+.|+...+..-|.-|.+-|++++..-.+++..+.+.+.. +...... .-.-
T Consensus 104 s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~ 183 (629)
T KOG2300|consen 104 SFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDD 183 (629)
T ss_pred CCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccH
Confidence 3445555666666666555679999999999999999999988876431 1111100 0034
Q ss_pred hHHHHHHHHHHHHhcCCC-CC-------------------------ChhHHHHHHHHHHHHHHhh---hhhhh-------
Q 014350 91 NYSEKCINNIMDFVSGSA-SQ-------------------------NFSLLREFYQTTLKALEEA---KNERL------- 134 (426)
Q Consensus 91 ~~~~k~v~~il~~~~~~~-~~-------------------------~~~~~~~~~~~~l~~l~~~---~~~kl------- 134 (426)
..++++++.+-....++. |. ......++++.....+... -++++
T Consensus 184 ~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~ 263 (629)
T KOG2300|consen 184 YDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPI 263 (629)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChH
Confidence 556666666655555432 21 1111222333222222221 02222
Q ss_pred ---HH-H-HhHHHHHHH-----HHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhh--cCHHHHH
Q 014350 135 ---WF-K-TNLKLCKIW-----FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--KNNKKLK 202 (426)
Q Consensus 135 ---~~-r-~~~~La~~~-----~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~--~d~~kak 202 (426)
|+ + ...-|..+- .-.|-|++|.++-.++-..+.+....+-.++.-..+.+++.|.+++.+. +|+.+|.
T Consensus 264 l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al 343 (629)
T KOG2300|consen 264 LFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEAL 343 (629)
T ss_pred HHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 22 1 001111111 1123344444444444443332211121344566788999999887654 8999998
Q ss_pred HHHHHHHhhhccCCChhHH----HHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 203 QLYQKALAIKSAIPHPRIM----GIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 203 ~~l~~a~~i~~~~~~p~~~----~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..+...+..-+..+.|.+. +.+-..-|.+.+.-+-|..|...|.++.+.
T Consensus 344 ~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~ 396 (629)
T KOG2300|consen 344 EEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL 396 (629)
T ss_pred HHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh
Confidence 8887777766666666442 467788899999999999999999999764
No 204
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=48 Score=33.45 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH
Q 014350 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (426)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~ 136 (426)
.+.=+..|++.|+|..|...|.....++ .. -.. -+ .+..... ..+-+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~----------------~~~-~~--~ee~~~~-------------~~~k~ 257 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFL-EY----------------RRS-FD--EEEQKKA-------------EALKL 257 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHh-hc----------------ccc-CC--HHHHHHH-------------HHHHH
Confidence 3444678999999999999999887776 21 111 11 1111111 11222
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+.++||-.+...++|.+|...-.++...-. . +. .-+.-..+.++.++++..|+..+.++.++.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-------~---N~--KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-------N---NV--KALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-------C---ch--hHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3578999999999999999988888776621 1 22 234455678899999999999999987764
No 205
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.56 E-value=15 Score=35.56 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=70.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~ 220 (426)
.-|+=..+.++|++|...+.+.-..+.+ ++ =+|...+..|.++|.+..|-.-.++|..+. |.
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~-----nA-------VyycNRAAAy~~Lg~~~~AVkDce~Al~iD-----p~- 147 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPT-----NA-------VYYCNRAAAYSKLGEYEDAVKDCESALSID-----PH- 147 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-----cc-------hHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----hH-
Confidence 4455567789999999999999888642 22 144555668999999999988877776543 32
Q ss_pred HHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 221 MGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..+.|.-.|+.+...++|.+|...|..+++
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 245667789999999999999999888866
No 206
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=41 Score=35.11 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (426)
.+++++....---.+++. ...-+.-+.-+++.|+|..++.+|++.++.- |.-.+.+.-.+. +...+.+.|
T Consensus 340 ~Ek~~k~~e~~a~~~pe~----A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa--c~~kL~~~~--- 409 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEK----AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA--CYLKLGEYP--- 409 (539)
T ss_pred HHHHHHHHHHHHhhChhH----HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH--HHHHHhhHH---
Confidence 566666655543344432 2222333889999999999999999988886 554444443333 111121111
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
....=.+.|++. .--|.+-..|-|..+....+|++|.+.+++-+..
T Consensus 410 --~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 410 --EALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred --HHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111112222221 2246666777799999999999999999999887
No 207
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.19 E-value=3.1 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
+...+|.+|.+.|++++|.+.+++....
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998776
No 208
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=83.06 E-value=3.9 Score=29.17 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=37.8
Q ss_pred HHhcccccc--ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 347 LKLIKPYTR--IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 347 ~~i~~pYs~--I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
+.++..+.. ++..+||+.++++...+-..|.+|+..|.|.-.-|..++
T Consensus 11 L~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 11 LMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp HHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred HHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 334444444 999999999999999999999999999999877776654
No 209
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.96 E-value=3.3 Score=25.28 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
....+|.++...|+|++|.+.+++.....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 35789999999999999999999988774
No 210
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.82 E-value=13 Score=34.02 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCc-cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC---CC
Q 014350 36 LAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS---QN 111 (426)
Q Consensus 36 i~~~~~ii~~~~-~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~---~~ 111 (426)
+...++++.... ++.......++.=+-=+|..|+|+++...|+.-+..- +..+. -+|.++ +++ .. ..
T Consensus 76 mae~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~-----e~rsIl--y~N-raaa~iK 146 (271)
T KOG4234|consen 76 MAEIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTST-----EERSIL--YSN-RAAALIK 146 (271)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccH-----HHHHHH--Hhh-hHHHHHH
Confidence 334555555422 2323346677777888889999999999998887776 43222 111121 111 00 00
Q ss_pred hhHHHHHHHHHHHHHH-hhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 112 FSLLREFYQTTLKALE-EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~-~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
...+..-++-|-+.|+ |.++. +...|-|..|....+|++|.+-+.+++..
T Consensus 147 l~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 147 LRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 1122233333333333 22233 34457899999999999999888888776
No 211
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.48 E-value=51 Score=33.58 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (426)
+++|+=.|.......|. ..+++.-++..|-..|+..+++-.-....+.+ ++ .+++=+.+-. +..-..|. .
T Consensus 350 ~~~A~IaFR~Aq~Lap~----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~--sA~~LtL~g~--~V~~~dp~-~ 419 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPY----RLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QN--SARSLTLFGT--LVLFPDPR-M 419 (564)
T ss_pred hHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hc--chhhhhhhcc--eeeccCch-h
Confidence 34444444444333322 24556666666666666666655444444443 22 1111111110 11111121 2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHH
Q 014350 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl 191 (426)
.+...++++..+. -+-.|...-..+|.+..-+|.+..+..+|+....... |+ .+..++. .+
T Consensus 420 rEKAKkf~ek~L~------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~------~LH~~Lg--d~ 480 (564)
T KOG1174|consen 420 REKAKKFAEKSLK------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV------NLHNHLG--DI 480 (564)
T ss_pred HHHHHHHHHhhhc------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc------HHHHHHH--HH
Confidence 3455666665444 2346777778999999999999999999999888743 22 2233333 34
Q ss_pred HHhhcCHHHHHHHHHHHHhh
Q 014350 192 YTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 192 ~~~~~d~~kak~~l~~a~~i 211 (426)
..+.+.+.++-..+..|..+
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 55566666666666666544
No 212
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.02 E-value=2 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
.++||+.|.+.|+++.|-++|+++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 468999999999999999999999854
No 213
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.49 E-value=41 Score=39.24 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhH
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~ 135 (426)
+...|..+|.+.+.++++-|++..+++.+ + +.+ ++-....+.+-...+ .+....+++.+++++-. +-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~-q~~----~vW~~y~~fLl~~ne--~~aa~~lL~rAL~~lPk----~eH 1599 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-G-QTR----KVWIMYADFLLRQNE--AEAARELLKRALKSLPK----QEH 1599 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-c-chh----hHHHHHHHHHhcccH--HHHHHHHHHHHHhhcch----hhh
Confidence 44455677777778888888888887777 4 222 222233333332122 34556666666665432 445
Q ss_pred HHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014350 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 136 ~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~ 209 (426)
+.+..+.|.+-+..||=+.+-.++..+...- ++ +..+|-+|+. .-.+.++...++.+++++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-------PK--RtDlW~VYid---~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-------PK--RTDLWSVYID---MEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-------cc--chhHHHHHHH---HHHccCCHHHHHHHHHHHH
Confidence 5556678888888888877777777776552 22 3556666655 4556778888888887763
No 214
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=81.25 E-value=3.6 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=32.4
Q ss_pred ccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 350 IKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 350 ~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
..|=.++ +...||+.+|+|...+.+.+.+|..+|.|.
T Consensus 14 ~~~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 14 LRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred CCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3454567 899999999999999999999999999875
No 215
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=80.82 E-value=36 Score=32.26 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=78.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHH
Q 014350 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (426)
Q Consensus 142 La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~ 221 (426)
+++.....|+|.+|...+++....-.+ | ++.+....-.|...|++..|+..+.++.++.. .+|.+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~-----d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~--~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT-----D-------WEAWNLLGAALDQLGRFDEARRAYRQALELAP--NEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC-----C-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc--CCchhh
Confidence 788899999999999999999887432 2 34555555578889999999999999977642 234433
Q ss_pred HHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCC
Q 014350 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES 276 (426)
Q Consensus 222 ~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~ 276 (426)
. =.|..++-.+|+.+|..++..++... ..+ ..+...+.++..+.++
T Consensus 172 n----Nlgms~~L~gd~~~A~~lll~a~l~~--~ad---~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 172 N----NLGMSLLLRGDLEDAETLLLPAYLSP--AAD---SRVRQNLALVVGLQGD 217 (257)
T ss_pred h----hHHHHHHHcCCHHHHHHHHHHHHhCC--CCc---hHHHHHHHHHHhhcCC
Confidence 2 23556667899999999999987532 112 2344566666555543
No 216
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=55 Score=31.05 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHhhCCHHHHHHHHH
Q 014350 294 EILAMTNLIAAYQRNEIIEFEKILK 318 (426)
Q Consensus 294 ~~~~l~~L~~af~~~dl~~f~~~l~ 318 (426)
+...+..|+.+|..+|...+.+++.
T Consensus 227 d~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 227 DSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHc
Confidence 3455677777777777777776654
No 217
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.53 E-value=5.1 Score=30.73 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE 79 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~ 79 (426)
.+.++|+....+++++.++.. -.|+++-.++..|...|+|.+++++-..
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred chHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999876533 3799999999999999999999886543
No 218
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=79.24 E-value=11 Score=27.28 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=38.4
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
++..+|++.+|++...+-..+..|...|.|...-+...+...+.+
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 999999999999999999999999999999887666555555544
No 219
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=78.64 E-value=5.9 Score=27.62 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.8
Q ss_pred HHHHHhc-cccccccchhHHhHhCCChHHHHHHHHHhHHcC
Q 014350 344 QVLLKLI-KPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383 (426)
Q Consensus 344 ~~l~~i~-~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g 383 (426)
..|+.++ +.=..|+.+.||+.||+|...|.+.|..+-..|
T Consensus 3 ~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 3 KQILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3444444 333349999999999999999999999998888
No 220
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=78.09 E-value=6.1 Score=27.91 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=40.9
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
++.++..+-.++..+||+.++++..-+=..+-+|...|-|.-..|..|+
T Consensus 8 iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 8 ILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 3445555677999999999999999999999999999999888887664
No 221
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.02 E-value=18 Score=28.44 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=47.3
Q ss_pred cccCCCCHHHHHHHHHHHhcCCcc--c-h--hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 25 KGLVETDPEGALAGFAEVVAMEPE--K-A--EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~~--~-~--~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..+..+|+.+|++.+....+.... . . .-..-++-.++.++...|+++++.+.+...+...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456788999999999999875431 1 1 1124567788999999999999999999998886
No 222
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=77.76 E-value=7.1 Score=27.86 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcccccccc-chhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 336 DLLKNVRTQVLLKLIKPYTRIR-IPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 336 ~L~~~l~~~~l~~i~~pYs~I~-l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.+.+.++..-+.....+-..+. ..+||+.+|+|...+.+.+.+|...|-|.
T Consensus 5 ~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 5 QIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444444333332234444454 99999999999999999999999999875
No 223
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=77.58 E-value=10 Score=29.07 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=36.7
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.++.+.||+.+++|+..+++.+.+|...|.|...=-+ +|-....++++
T Consensus 25 ~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~-~GGy~L~~~~~ 72 (83)
T PF02082_consen 25 PVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGR-GGGYRLARPPE 72 (83)
T ss_dssp -BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETST-TSEEEESS-CC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCC-CCceeecCCHH
Confidence 3999999999999999999999999999998665433 45555555443
No 224
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=77.26 E-value=6.6 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=30.9
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
..++..+||+.++++...+...+..|...|.|.-
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999988753
No 225
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=77.02 E-value=74 Score=30.80 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=33.0
Q ss_pred hhHhHHHHhhcccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014350 15 VSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE 79 (426)
Q Consensus 15 ~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~ 79 (426)
..+|..+.+.-.. .++-+.+++.+.+.+.......... ...-.+.++...|+++++++++..
T Consensus 66 l~av~~la~y~~~-~~~~e~~l~~l~~~~~~~~~~~~~~--~~~~~A~i~~~~~~~~~AL~~l~~ 127 (290)
T PF04733_consen 66 LQAVRLLAEYLSS-PSDKESALEELKELLADQAGESNEI--VQLLAATILFHEGDYEEALKLLHK 127 (290)
T ss_dssp CHHHHHHHHHHCT-STTHHCHHHHHHHCCCTS---CHHH--HHHHHHHHHCCCCHHHHHHCCCTT
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHhccccccHH--HHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444444433322 2356778888877765543211111 223334667778888888876654
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=76.95 E-value=7.3 Score=39.92 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
..+++++|+..|++.++.++++.+ .--++.+++-+|..+|+.+++.+.+...+..
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356899999999999999986532 1246899999999999999999999998876
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.82 E-value=75 Score=30.75 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=91.1
Q ss_pred hcccCCCCHHHHHHHHHHHhcCCccc-hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 014350 24 EKGLVETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (426)
Q Consensus 24 ak~~~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~ 102 (426)
++...+.+++..+..++.-+..+++| ..| -.|+.+|..+|+++.+..-|..-..+. +.. +.+--..-.++-
T Consensus 130 a~~~~~~~~~~l~a~Le~~L~~nP~d~egW-----~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n--~~~~~g~aeaL~ 201 (287)
T COG4235 130 AQPPAEQEMEALIARLETHLQQNPGDAEGW-----DLLGRAYMALGRASDALLAYRNALRLA-GDN--PEILLGLAEALY 201 (287)
T ss_pred ccCCCcccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhcchhHHHHHHHHHHHhC-CCC--HHHHHHHHHHHH
Confidence 33344556889999999999999865 345 568999999999999999999888875 432 222222222222
Q ss_pred HhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHH
Q 014350 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (426)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~ 182 (426)
++..+.. ......+++.++. . +.--+|...-||.-++++|+|.+|....+.+....... ++ ...++
T Consensus 202 -~~a~~~~-ta~a~~ll~~al~---~---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~---~~---rr~~i 267 (287)
T COG4235 202 -YQAGQQM-TAKARALLRQALA---L---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD---DP---RRSLI 267 (287)
T ss_pred -HhcCCcc-cHHHHHHHHHHHh---c---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC---Cc---hHHHH
Confidence 2221221 1223333333332 1 11123456678999999999999999999999987542 23 36666
Q ss_pred HHHHHH
Q 014350 183 EVYAIE 188 (426)
Q Consensus 183 e~~l~e 188 (426)
+-....
T Consensus 268 e~~ia~ 273 (287)
T COG4235 268 ERSIAR 273 (287)
T ss_pred HHHHHH
Confidence 665554
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=76.73 E-value=60 Score=29.58 Aligned_cols=186 Identities=14% Similarity=0.187 Sum_probs=99.5
Q ss_pred eEEeeeeecccchhhHhHHHHhhcccCCCCHHHHHHHHHHHhcCCcc--------chhhhHHHHHHHHHHHHHhCCHHHH
Q 014350 2 WIYIFFLFSDEFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPE--------KAEWGFKALKQTVKLYYRLGKYKEM 73 (426)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~--------~~~~~~k~l~~l~~l~~~~~~~~~l 73 (426)
|+||.|+|.----|+-.+-.+-.+-..+..-..+....+.-++-+.. +..-+..-=..++.-....|++.++
T Consensus 29 WlfIif~Fp~iG~VaYfvav~LPEl~~~R~a~~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA 108 (251)
T COG4700 29 WLFIIFCFPVIGCVAYFVAVMLPELGADRHAHTLLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEA 108 (251)
T ss_pred HHHHHHHhcccchhhHHHHHhhhHhcccchhHHHHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhh
Confidence 89999998766566655555554433322223333333332221110 0011223334566777778888888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHH
Q 014350 74 MDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG 153 (426)
Q Consensus 74 ~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~ 153 (426)
..+|.+.+.-. +. .| . .+.+-+|+-.+..++..
T Consensus 109 ~~hy~qalsG~-------------------fA--~d--~------------------------a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 109 VPHYQQALSGI-------------------FA--HD--A------------------------AMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHHhccc-------------------cC--CC--H------------------------HHHHHHHHHHHhhccHH
Confidence 88887664432 11 11 0 02456677777888888
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhH
Q 014350 154 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHM 233 (426)
Q Consensus 154 ~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~ 233 (426)
+|...|+++-..-+. +-. -+-.+.-.|.+...|.+..|...++.+..-. |--++.++ -|.+..
T Consensus 142 ~a~~tLe~l~e~~pa--~r~--------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg~~ar~~--Y~e~La 204 (251)
T COG4700 142 AAQQTLEDLMEYNPA--FRS--------PDGHLLFARTLAAQGKYADAESAFEVAISYY-----PGPQARIY--YAEMLA 204 (251)
T ss_pred HHHHHHHHHhhcCCc--cCC--------CCchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CCHHHHHH--HHHHHH
Confidence 888888877665321 111 1223444577788888888887777654321 22233332 233444
Q ss_pred HhhcHHHHHHHHHHHHhh
Q 014350 234 AERQWADAATDFFEAFKN 251 (426)
Q Consensus 234 ~~~~y~~A~~~f~ea~~~ 251 (426)
.+++-.+|..-+.+.+++
T Consensus 205 ~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 205 KQGRLREANAQYVAVVDT 222 (251)
T ss_pred HhcchhHHHHHHHHHHHH
Confidence 555555565555555543
No 229
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=76.70 E-value=3.8 Score=29.93 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=30.1
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
..-++-.+||+.+|++.-.+..+|..|-.+|+|.
T Consensus 13 ~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 13 NGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp TS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6678889999999999999999999999999985
No 230
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.23 E-value=73 Score=31.81 Aligned_cols=123 Identities=17% Similarity=0.308 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHhhhh--h----------hhhHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSA--V----------TRNYSE 94 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~-l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~----------~k~~~~ 94 (426)
.+.|+.+|+.+++=-.+.+.+. ...+.. |+-+++..|+|+++++.|+-+...-... + .+.+.+
T Consensus 34 s~rDytGAislLefk~~~~~EE----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREE----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred hcccchhHHHHHHHhhccchhh----hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 4568999999987765544311 122333 7889999999999999998875431000 0 011110
Q ss_pred HHHHHHHHHhcCCCCCChhHHH-HHHHHHHHHHHhhhhhhhHH----------HHhHHHHHHHHHhccHHHHHHHHHHHH
Q 014350 95 KCINNIMDFVSGSASQNFSLLR-EFYQTTLKALEEAKNERLWF----------KTNLKLCKIWFDMGEYGRMSKILKELH 163 (426)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~kl~~----------r~~~~La~~~~~~g~~~~A~~ll~el~ 163 (426)
-+.++... |. ...+. -++..+.. -++++.|. .-.+-||.+++-.-.|++|.+++..+.
T Consensus 110 --A~~~~~ka---~k--~pL~~RLlfhlahk----lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 110 --AKSIAEKA---PK--TPLCIRLLFHLAHK----LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred --HHHHHhhC---CC--ChHHHHHHHHHHHH----hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222 22 11222 23333333 34555554 123578888888899999999999887
Q ss_pred hh
Q 014350 164 KS 165 (426)
Q Consensus 164 ~~ 165 (426)
.-
T Consensus 179 ~d 180 (557)
T KOG3785|consen 179 QD 180 (557)
T ss_pred hc
Confidence 65
No 231
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.19 E-value=7.5 Score=33.32 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHH
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
+..+.+.-|.+...-++..|++|...++|-.+|+|++++-+.+.+
T Consensus 111 maAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~ddAtk~ilE 155 (197)
T KOG4414|consen 111 MAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDDATKGILE 155 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566667777888888999999999999999999998776654
No 232
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=76.01 E-value=6.3 Score=31.73 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=38.9
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEec
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~ 391 (426)
.|+..+....+++.+.||+.+|+|+..+-+.+.+|..+|-|. +.+|+
T Consensus 7 ~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~~~ 56 (108)
T smart00344 7 KILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVINP 56 (108)
T ss_pred HHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEEEeCH
Confidence 444555556789999999999999999999999999999886 45564
No 233
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.53 E-value=7.8 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
+..++|..|...|++++|.+.+++....
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4578999999999999999999998876
No 234
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=75.46 E-value=4.7 Score=25.27 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.9
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
++-++||..+|++.+-|-+.+.++-.+|.|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 566899999999999999999999998875
No 235
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=75.33 E-value=36 Score=30.93 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.++||.-..+.|++.||...+++...-.+. +|. .+++--.+..++.++...|...+++....+++.-.|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA----~d~-------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFA----HDA-------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccC----CCH-------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 469999999999999999999988775543 343 234445577789999999999998875554443222
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.-+ +.-|..+...+.|.+|...|..+...|
T Consensus 161 d~~----Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGH----LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred Cch----HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 211 234566667889999999999887765
No 236
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=75.17 E-value=7.9 Score=28.06 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 336 ~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
.+++.|+..-...-..|=+.+ +...||+.+|+|...+.+-+..|..+|.|.-
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEE
Confidence 344555544444455677899 9999999999999999999999999998753
No 237
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.44 E-value=40 Score=31.70 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 114 ~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
...++++.+.+.....+..|+...+...+|+.|+..|+|++|.++++.+...
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4466666666666665667777788999999999999999999999999443
No 238
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=74.33 E-value=6.7 Score=34.52 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=42.7
Q ss_pred HHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 343 TQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 343 ~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
.+.|+..+.--.|++...||+.+|+|+..+-.-+-+|..+|.|. +.+|..
T Consensus 16 D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p~ 68 (164)
T PRK11169 16 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPH 68 (164)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34556777788999999999999999999999999999999985 566643
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=74.21 E-value=81 Score=32.90 Aligned_cols=157 Identities=14% Similarity=0.192 Sum_probs=86.1
Q ss_pred ecccchhhHhHHHHhhcccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh
Q 014350 9 FSDEFTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~ 88 (426)
=.|....+..+++ ++-.+.||+.-++.=++.++.+++- ..++.-++.= ......++.+++++-++--+...
T Consensus 164 d~D~~r~Aq~IMq---~AWRERnp~aRIkaA~eALei~pdC----AdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l 234 (539)
T PF04184_consen 164 DTDALRPAQEIMQ---KAWRERNPQARIKAAKEALEINPDC----ADAYILLAEE--EASTIVEAEELLRQAVKAGEASL 234 (539)
T ss_pred CCCccCHHHHHHH---HHHhcCCHHHHHHHHHHHHHhhhhh----hHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh
Confidence 3456666667776 5667788998888888888877531 2222222210 12234455555554443321110
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 89 TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 89 ~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
.+.. ..++.+ ...+ .+. ..+-+.+..+..+||....+.|+.+||.+.++++.++...
T Consensus 235 g~s~-----------~~~~~g-------~~~e----~~~-~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 235 GKSQ-----------FLQHHG-------HFWE----AWH-RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred chhh-----------hhhccc-------chhh----hhh-ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 0000 000011 1111 100 1233445566689999999999999999999999988642
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014350 169 EDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (426)
Q Consensus 169 ~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~ 207 (426)
+| ...++-.-+..++..+.|..++.++.+
T Consensus 292 ----~~------~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 292 ----LD------NLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ----cc------hhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 12 223333333456677777777776654
No 240
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.93 E-value=5.5 Score=26.56 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=25.0
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHh
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSL 379 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~l 379 (426)
.|+..+..-.+.++..||+.+|+|+..|-.-+.+|
T Consensus 7 ~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 7 KILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 34445555599999999999999999988776654
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.90 E-value=7.7 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
...||..|.+.|++++|.+.++++.....
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 56899999999999999999999999854
No 242
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=73.51 E-value=5.6 Score=26.53 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=29.8
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.++..+||+.+|++...+-+.+.+|...|.+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 243
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=73.21 E-value=6.8 Score=34.00 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEec
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~ 391 (426)
.|+..+.--.|++.+.||+.+|+|+..|-.-+-+|..+|.|. +.+|.
T Consensus 13 ~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~ 62 (153)
T PRK11179 13 GILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNP 62 (153)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 334444445899999999999999999999999999999995 56674
No 244
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=73.14 E-value=11 Score=26.39 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=37.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
-..+++.+|++.+|++...+-+.|.+|...|.+...-+...+.+.+
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~~ 53 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYSL 53 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEEE
Confidence 4568999999999999999999999999999997554444444333
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.74 E-value=91 Score=29.81 Aligned_cols=174 Identities=13% Similarity=0.117 Sum_probs=107.3
Q ss_pred cCCCCHHHHHHHHHHHhcCC----ccchhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 014350 27 LVETDPEGALAGFAEVVAME----PEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~----~~~~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il 101 (426)
.+++|.+.|.-+|.++-... ++..+...+.+.++|+-..+.+ +++.+..++++...++ +...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l-~~~~~----------- 71 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL-EKPGK----------- 71 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-Hhhhh-----------
Confidence 46788999999998885433 2345556788888888888888 9999998888887776 22100
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHH---HHHHHHHHHHhhcccCCCCcchhhh
Q 014350 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG---RMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~---~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.-...|+ ...+.+++..-|++.|.+.+.++ +|..++..+..+..
T Consensus 72 -~~~~~~~---------------------~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----------- 118 (278)
T PF08631_consen 72 -MDKLSPD---------------------GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG----------- 118 (278)
T ss_pred -ccccCCc---------------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-----------
Confidence 0011111 11244456778899999988764 46677777766642
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHH-hHHhhcHHHHHHHHHHHHhh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM-HMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~-~~~~~~y~~A~~~f~ea~~~ 251 (426)
...++++..+++....+|...+...+...-...+ .++.. +..+...+ .+.+.+...|+..+...+.+
T Consensus 119 -~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~----~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 119 -NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESN----FDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred -CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccch----HHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 2446666667777777888877777665522211 11111 12111111 23455667788888777653
No 246
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.63 E-value=18 Score=33.47 Aligned_cols=52 Identities=21% Similarity=0.131 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCcc--chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 32 PEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
...|++.|.+.++.+.. .+....+.+.-+|.|+++.|++++|..++..+..-
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 36899999999887642 22234778888999999999999999999888766
No 247
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=72.04 E-value=12 Score=25.38 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
...+..+||+.+|++...+-+.|..|...|.|.
T Consensus 14 ~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 14 GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 778899999999999999999999999999774
No 248
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=71.88 E-value=5.3 Score=30.20 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=32.0
Q ss_pred hccccccccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
+...+...|.+.||+.+|+|+..|...+.++...|.+
T Consensus 26 L~R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 26 LAREEAGKTASEIAEELGRTEQTVRNHLKGETKAGGL 62 (73)
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccchH
Confidence 3355689999999999999999999999988877765
No 249
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.65 E-value=23 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++..++.-+++.|+|+++.+++..++..-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 357788999999999999999999999885
No 250
>PRK09954 putative kinase; Provisional
Probab=71.33 E-value=11 Score=37.67 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=45.3
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecCCCEEEEe
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQVNRLLERG 399 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~~g~v~~~ 399 (426)
|+.+++-..+++.+.||+.|+++...|.+.|.+|..+|.|. ..+|+..+++.+-
T Consensus 8 il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~viG 64 (362)
T PRK09954 8 ILAILRRNPLIQQNEIADILQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVVG 64 (362)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEEE
Confidence 45555556799999999999999999999999999999984 4778888776654
No 251
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=70.84 E-value=65 Score=34.01 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.9
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 142 La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
+|-.+...|++++|...+++....- + -+..+....+++...|+..+|...+.+|...++.
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~-------p------s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLE-------M------SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-------C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4445555688888888887776662 1 1346666677788888888888888877655443
No 252
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=70.58 E-value=8.2 Score=33.15 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=39.9
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEec
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQ 391 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~ 391 (426)
|+.+++--.++++..||+.+|+|+..+-.-+-+|..+|.|. +.+|.
T Consensus 13 IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 13 ILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred HHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 45566666779999999999999999999999999999884 67886
No 253
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.23 E-value=11 Score=39.47 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=91.2
Q ss_pred cccCCCC-HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 014350 25 KGLVETD-PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (426)
Q Consensus 25 k~~~~~~-~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (426)
+++.+.+ ...-.+.|.......+.... ..+---|+.||.-.|.++++.++|+..+... |. -..+=+++...
T Consensus 402 ~s~~~~~~l~~i~~~fLeaa~~~~~~~D--pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pn-----d~~lWNRLGAt 473 (579)
T KOG1125|consen 402 KSFLDSSHLAHIQELFLEAARQLPTKID--PDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PN-----DYLLWNRLGAT 473 (579)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCCC--hhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-Cc-----hHHHHHHhhHH
Confidence 5666665 67777888888766553211 4566778999999999999999999988775 43 34466666666
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
+.+..- .+....-|..+++. + --|+|+.++||--+...|.|.+|.+.+-+....-.
T Consensus 474 LAN~~~--s~EAIsAY~rALqL-q-----P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 474 LANGNR--SEEAISAYNRALQL-Q-----PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred hcCCcc--cHHHHHHHHHHHhc-C-----CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 665322 44566667777663 2 25778889999999999999999988877665543
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=69.83 E-value=96 Score=33.76 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=38.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
.++..+|||.++-.+++..- +-.+...+..-+.-.|..+.....|.+|.++|..+
T Consensus 768 elr~klgDwfrV~qL~r~g~----~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGG----SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35668899999999876531 11223334445556778888889999999888766
No 255
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=60 Score=30.37 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHH
Q 014350 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKD 371 (426)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~e 371 (426)
|-+.+.-.|-+.+..|.+.+.....+.. .++.+.-.++-|...||...=-.+=++|.-|+++..+++|.++.++
T Consensus 135 ~~I~~~v~LEq~~MEGaYnKv~~a~~s~-----p~~~y~~FmdIl~~tiRdEIA~c~EKsYd~l~~s~a~~~L~f~~~~ 208 (260)
T KOG3151|consen 135 PYISHPVSLEQSLMEGAYNKVLSAKQSI-----PSEEYTYFMDILLDTIRDEIAGCIEKSYDKLSASDATQMLLFNNDK 208 (260)
T ss_pred chhhhHHHHHHHHHhhHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcCChH
Confidence 5667777888888888887766654432 3677778888888888877666677899999999999999997443
No 256
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.70 E-value=7 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHhccHHHHHHHHH
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILK 160 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~ 160 (426)
....||..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35689999999999999998775
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.24 E-value=15 Score=34.92 Aligned_cols=67 Identities=22% Similarity=0.145 Sum_probs=54.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (426)
+.++|++.|...|..+++..++ ..|...++-.|+.+....|+-+++..++.++.+.. |.-..+..++
T Consensus 189 y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~aA~~Ak 255 (262)
T COG1729 189 YAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTDAAKLAK 255 (262)
T ss_pred HhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 3578999999999999886653 45567899999999999999999999999999988 6544444333
No 258
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.23 E-value=5.5 Score=36.47 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=63.8
Q ss_pred cccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCC-ChHH
Q 014350 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKD 371 (426)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l-~~~e 371 (426)
|...++..++..|..|++..+..-.... +.+..+- ..+++...+..+...-+.+.-.-+-..+.+ ++-+
T Consensus 57 ~~dsa~lrlL~lFa~Gt~~Dy~aea~rl-p~Ls~~q---------~~kLk~ltV~slas~~k~lpy~~Ll~~l~~~nvre 126 (258)
T KOG3250|consen 57 PIDSAYLRLLELFAYGTYRDYSAEALRL-PKLSLAQ---------LNKLKHLTVVSLASFEKCLPYLVLLRLLPSRNVRE 126 (258)
T ss_pred cccHHHHHHHHHHhcCchhhhhhhhhcC-CCCCHHH---------HHhhhcceehhhhhhchhhhHHHHHhhccCCchhH
Confidence 4455677888999999988775422111 1111111 112222233334444455555566667777 5889
Q ss_pred HHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 372 VEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 372 vE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+|.+|.+++-.+-+.|+|||.+.++++.
T Consensus 127 lEd~iieamya~IlrGkldqr~q~leV~ 154 (258)
T KOG3250|consen 127 LEDLIIEAMYADILRGKLDQRNQTLEVD 154 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHhhcceEeec
Confidence 9999999999999999999999999885
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=68.92 E-value=15 Score=24.16 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
++..++..|...|+++++.+.|...++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45677888888888888888888887775
No 260
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=68.84 E-value=14 Score=31.59 Aligned_cols=51 Identities=6% Similarity=-0.011 Sum_probs=43.3
Q ss_pred cccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.|=..++.+.||+.+|+|...+++.+.+|-..|.|..+=-...|+....++
T Consensus 21 ~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~~ 71 (141)
T PRK11014 21 PEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPA 71 (141)
T ss_pred CCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCCH
Confidence 444578999999999999999999999999999998887777777665544
No 261
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=68.71 E-value=7.8 Score=27.94 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=31.3
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
..++...||+.+|++...+.+.+.+|...|.|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3689999999999999999999999999998864
No 262
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=1.4e+02 Score=30.43 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|+..=..|++.++.+ ..++.-=+.+++-.++.+.++.++++-++.- |.-.+++.+-+.-..++.-.+.-
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHFQQALRLD-PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred cccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHHhhhhccC-hhhhhHHhHhhhHHHHHHHHhhh
Confidence 346778888877887776532 3344444678888999999999999998886 66556666555544444433311
Q ss_pred C-----CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 109 S-----QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 109 ~-----~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
+ -+....-+.|..++. +. ..+.+.-..+..+.|......|...+|..--.+..+. | ...+.
T Consensus 257 N~~fk~G~y~~A~E~Yteal~-id-P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D----~syik 322 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN-ID-PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------D----SSYIK 322 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc-CC-ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------C----HHHHH
Confidence 1 122333333433333 11 1355566677778888888888888887766666665 3 33567
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
-++...+-++.+++|..|.+.++++.+...
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777778889999999999999998866543
No 263
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=68.68 E-value=14 Score=31.27 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=38.7
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++.+.||+.+++|...+++.+.+|...|.+...=....|+.-..++
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCH
Confidence 369999999999999999999999999999998754555555443333
No 264
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.54 E-value=7.9 Score=22.83 Aligned_cols=26 Identities=19% Similarity=0.572 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014350 57 LKQTVKLYYRLGKYKEMMDAYREMLT 82 (426)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (426)
+..++..|.+.|+++++.+.+..+.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 56788999999999999999988764
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=68.22 E-value=67 Score=33.44 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=69.6
Q ss_pred hccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhh
Q 014350 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (426)
Q Consensus 149 ~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~ 228 (426)
.++.+.|.++|.+.+..-++ +.+ +.+.+.|++...||.++|...++++....+. -|.++.....=.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~----------s~l--fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN----------SAL--FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC----------cHH--HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHH
Confidence 34567899999999887542 223 4667789999999999999999977532221 244444333334
Q ss_pred HHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHH-HHHHHHHHHh
Q 014350 229 GKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC-LKYLVLANML 273 (426)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~-lky~~L~~lL 273 (426)
|..|+...+|.+|..+|....+ ...|..+ ..|+.-|.++
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~------~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLK------ESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHH
Confidence 5668889999999999888743 2244343 3455444443
No 266
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=67.95 E-value=20 Score=33.63 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=33.2
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akI 389 (426)
.+++-..||+.+|+|...+-.-+.+|-..|.|.++=
T Consensus 197 grlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 197 GLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred ccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 499999999999999999999999999999998754
No 267
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=67.26 E-value=2.7e+02 Score=33.05 Aligned_cols=187 Identities=13% Similarity=0.150 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhcCCc-cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhcCCC
Q 014350 32 PEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS--AVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~-~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~--~~~k~~~~k~v~~il~~~~~~~ 108 (426)
|+.|.+.-.-+ -..| +...| +..++ ...+.++.+++.+.....++-++. ..-|-.+=-+.=++...+.
T Consensus 1441 pesaeDferlv-rssPNSSi~W----I~YMa-f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--- 1511 (1710)
T KOG1070|consen 1441 PESAEDFERLV-RSSPNSSILW----IRYMA-FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--- 1511 (1710)
T ss_pred CcCHHHHHHHH-hcCCCcchHH----HHHHH-HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---
Confidence 44555554444 4444 55667 33333 345667888888888888777511 1112112222222333332
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
..+.+.+.++.+....+. .++..+|+.+|...+++++|.++++...+.+.. ...+...-
T Consensus 1512 --~eesl~kVFeRAcqycd~-------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------------~~~vW~~y 1570 (1710)
T KOG1070|consen 1512 --TEESLKKVFERACQYCDA-------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------------TRKVWIMY 1570 (1710)
T ss_pred --cHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------------hhhHHHHH
Confidence 246788888887776554 235678899999999999999999999888641 12233333
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
+...++.++-..|+.++.+|.+..+.--|-.+. ...+++.+..||-..+...|-.-..+|
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I----skfAqLEFk~GDaeRGRtlfEgll~ay 1630 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPKQEHVEFI----SKFAQLEFKYGDAERGRTLFEGLLSAY 1630 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH----HHHHHHHhhcCCchhhHHHHHHHHhhC
Confidence 335556666788899999887765542232221 222334444556566555665555554
No 268
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.75 E-value=15 Score=22.18 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.+..++..|.+.|+++.+.+.+..+...
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4677899999999999999999888653
No 269
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=66.26 E-value=1.2e+02 Score=33.23 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=45.0
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
++..+-..--....+|.+|..++..++..-+. ...+-+....|...+|+..|..+++++-.+.+
T Consensus 733 ~~~~kaieaai~akew~kai~ildniqdqk~~-------------s~yy~~iadhyan~~dfe~ae~lf~e~~~~~d 796 (1636)
T KOG3616|consen 733 NCLIKAIEAAIGAKEWKKAISILDNIQDQKTA-------------SGYYGEIADHYANKGDFEIAEELFTEADLFKD 796 (1636)
T ss_pred hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc-------------cccchHHHHHhccchhHHHHHHHHHhcchhHH
Confidence 55566666666778889999988888765321 13445556778889999999999887744433
No 270
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=66.02 E-value=15 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=32.8
Q ss_pred HhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 348 ~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.+.+.=..|+..+||+.||+++.-|-..+-+|-..|.+.
T Consensus 15 ~l~~~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 15 ELSEEGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHHCTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 333455789999999999999999999999999999875
No 271
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.87 E-value=15 Score=24.82 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 59 QTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.+++.|.+.|+.+.+.+.+..++.-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 5788999999999999999988754
No 272
>PHA02943 hypothetical protein; Provisional
Probab=65.70 E-value=52 Score=28.61 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhh
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYL 405 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~ 405 (426)
-++.++ -.-.-+.++||+.+|+|..+++..|--+=.+|.|.- +-++.-.+..-.+.++.
T Consensus 15 eILE~L-k~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~Vkr-V~~G~~tyw~l~~day~ 73 (165)
T PHA02943 15 KTLRLL-ADGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLK-VEIGRAAIWCLDEDAYT 73 (165)
T ss_pred HHHHHH-hcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEE-EeecceEEEEEChHHHH
Confidence 344455 466778999999999999999999999999999964 55666666666554443
No 273
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=65.57 E-value=15 Score=32.01 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=40.3
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
-..++.+.||+..++|...+++.+..|...|.|...=-...|+.-..++
T Consensus 22 ~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p 70 (153)
T PRK11920 22 GKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPA 70 (153)
T ss_pred CCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCH
Confidence 3468999999999999999999999999999998777665565444444
No 274
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=65.38 E-value=12 Score=27.82 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=36.7
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
.++-+.||..+|++.+.+-+.+.+|..+|.|. ...|.+.+.++.
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~----~~~~~i~I~d~~ 71 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIE----VKRGKIIILDPE 71 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESSHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 57899999999999999999999999999776 455566666543
No 275
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=65.29 E-value=15 Score=25.40 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=29.4
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
=..+++.+||+.+|+|...+-.++..|...|-+.
T Consensus 16 ~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 16 GGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp BSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 3458999999999999999999999999998763
No 276
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.18 E-value=1.6e+02 Score=29.73 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHh
Q 014350 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 139 (426)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~ 139 (426)
.+.-+.+.|+.+++.+.+...++.. -. .. +...++.+. |+ +.+..++.++ ..+.+..++- -+.
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~-~D------~~-L~~~~~~l~--~~-d~~~l~k~~e---~~l~~h~~~p---~L~ 331 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQ-WD------PR-LCRLIPRLR--PG-DPEPLIKAAE---KWLKQHPEDP---LLL 331 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhc-cC------hh-HHHHHhhcC--CC-CchHHHHHHH---HHHHhCCCCh---hHH
Confidence 3445566666666666666555543 11 01 333333332 11 2333333333 3444444333 234
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~ 209 (426)
+-||.+++..+.|.+|.+.++...+.-.. .+-+..-...+-..|+..+|.+....+.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s-------------~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPS-------------ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCC-------------hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56777777788888877777755444211 1112233345666777777776665553
No 277
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=65.16 E-value=2.4e+02 Score=31.66 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 014350 58 KQTVKLYYRLGKYKEMMDAYREM 80 (426)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l 80 (426)
.++++.|.+.++.|-+.-.+-.+
T Consensus 761 ~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 761 DNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred HHHHHHhhhhccccHHHHhhhhh
Confidence 56789999999999887665433
No 278
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=65.11 E-value=12 Score=32.46 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=46.5
Q ss_pred HHHHHhccc--cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 344 QVLLKLIKP--YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 344 ~~l~~i~~p--Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
|.+..+..- ...++.+.||+..|+|+..+++.+.+|-..|.+..+=-...|+.-..++
T Consensus 12 ~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~ 71 (150)
T COG1959 12 RALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPP 71 (150)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCCCh
Confidence 445555533 3479999999999999999999999999999999887777777655544
No 279
>PF12728 HTH_17: Helix-turn-helix domain
Probab=65.02 E-value=12 Score=25.56 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=34.7
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHHHHhc
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFLLLKK 412 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~~~ 412 (426)
++.+++|+.||++...+. +++..|.|.+. . .|-.....+.+.+.++..+|
T Consensus 2 lt~~e~a~~l~is~~tv~----~~~~~g~i~~~--~-~g~~~~~~~~~l~~~~~~~~ 51 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVY----RWIRQGKIPPF--K-IGRKWRIPKSDLDRWLERRR 51 (51)
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCeE--E-eCCEEEEeHHHHHHHHHhCc
Confidence 477899999999988765 55578999776 2 33335556666677766543
No 280
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.87 E-value=25 Score=33.98 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=49.1
Q ss_pred hHHHHhhcccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 18 ~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
...||.|. +.+..+|.+.|.+.+..|+.+ .+++-.++.-++++|+|.++....+.++...
T Consensus 198 eaL~~~a~---~~~ta~a~~ll~~al~~D~~~----iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 198 EALYYQAG---QQMTAKARALLRQALALDPAN----IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcC---CcccHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 34444443 223478999999999998865 6889999999999999999999999999887
No 281
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=64.71 E-value=10 Score=36.03 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
|...|+.+++...+|++.++|+.|++|+.-+.+-|..|-..|.|
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l 49 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTV 49 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 66788889999999999999999999999999999999999976
No 282
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.47 E-value=2.1e+02 Score=30.82 Aligned_cols=217 Identities=8% Similarity=0.078 Sum_probs=117.3
Q ss_pred CCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHhcC
Q 014350 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSG 106 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~ 106 (426)
.|++.|...+.+.+..-. +-.+..+.+---+++++.+.+.-. ++..+...+... ....-....-..+=+ +.....
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~-~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS-ETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHHh
Confidence 367888888877765443 223445666666677777777666 776666666665 332233333333333 222211
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccC--CCCcchhhhhhHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE--DGTDDQKKGSQLLEV 184 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~--~~~~d~~~~~~l~e~ 184 (426)
..| .....+.++.....-+..++..+++-..+--+.+++..|..+++.+.+++........ +++. ......+=+
T Consensus 152 ~~d--~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--~~~qL~~~~ 227 (608)
T PF10345_consen 152 HKD--YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--HIPQLKALF 227 (608)
T ss_pred ccc--HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--CcHHHHHHH
Confidence 122 3334444444444332223344555444555666677787777777777774433321 1111 111223333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------Hhhh------cc--C--------------C---C----hhHHHHHHHhh
Q 014350 185 YAIEIQMYTETKNNKKLKQLYQKA-------LAIK------SA--I--------------P---H----PRIMGIIRECG 228 (426)
Q Consensus 185 ~l~e~rl~~~~~d~~kak~~l~~a-------~~i~------~~--~--------------~---~----p~~~~~i~~~~ 228 (426)
.+.++-.++..|++..++..++.- .+.. +. + + + ..+.+-.+..+
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS 307 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS 307 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence 344444456677766655555433 2211 00 0 1 0 23445667899
Q ss_pred HHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 229 GKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
|+..++.+....|.++|-++...-
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i 331 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQI 331 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHH
Confidence 999999999889999999997654
No 283
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=64.28 E-value=86 Score=35.49 Aligned_cols=50 Identities=14% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (426)
..+..+|+..|+..+..+|.| +++-..++..|-..|++..++..+++-.-
T Consensus 575 a~n~h~aV~~fQsALR~dPkD----~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKD----YNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchh----HHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 345566666666666666543 44556666667666666666666554433
No 284
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=63.83 E-value=18 Score=25.82 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=34.4
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
+..+......++..||+.+|++...+-..|..|...|.|..
T Consensus 16 l~~L~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 16 LRLLASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHHHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEE
Confidence 33345568899999999999999999999999999998865
No 285
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=63.73 E-value=27 Score=25.36 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=31.1
Q ss_pred HhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 348 ~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
..+-.+-+.++.+|.+..++|.+.+.+-|+-||.-|-+.
T Consensus 20 ~~Ll~~G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~ 58 (62)
T PF08221_consen 20 EVLLSRGRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQ 58 (62)
T ss_dssp HHHHHC-SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCee
Confidence 344457899999999999999999999999999988764
No 286
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=63.29 E-value=12 Score=35.31 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=40.2
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
|...|+.+++....++.++||+.||+|+.-+.+.|..|-..|.+.
T Consensus 5 R~~~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~ 49 (240)
T PRK10411 5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKIL 49 (240)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 556678888888999999999999999999999999999988774
No 287
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.14 E-value=15 Score=21.93 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
++..++..|.+.|+++++.+.+..+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3567889999999999999999988643
No 288
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=62.55 E-value=36 Score=32.69 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC
Q 014350 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (426)
Q Consensus 332 ~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~ 392 (426)
.+++.+.+.+.+ .+.--..|++.++|+.+++|.+.+...+......+.|+|++|..
T Consensus 112 ~Yld~l~~Eine-----~Lqe~G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~ 167 (272)
T PF09743_consen 112 SYLDSLAEEINE-----KLQESGQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD 167 (272)
T ss_pred HHHHHHHHHHHH-----HHHHcCeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC
Confidence 455555555532 22334899999999999999999997777778888999999998
No 289
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=61.83 E-value=34 Score=24.57 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=33.0
Q ss_pred cccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC
Q 014350 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~ 393 (426)
.....++..+||+.++++...+-..|-+|+..|.|.=.-|..+
T Consensus 14 ~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d 56 (68)
T PF13463_consen 14 HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHD 56 (68)
T ss_dssp --TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSC
T ss_pred ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCc
Confidence 4778999999999999999999999999999999965544433
No 290
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.97 E-value=72 Score=34.45 Aligned_cols=125 Identities=16% Similarity=0.254 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-HhcCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD-FVSGSASQ 110 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~-~~~~~~~~ 110 (426)
..+.|+...+++....+. +...+++.+.+.-+-..|+++++..+|...-.+- .+-.+++..+. .+.. ++.
T Consensus 393 ~~G~i~~~~~Li~~~~~~-~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d-------~vl~lln~~Ls~~l~~-~~~ 463 (613)
T PF04097_consen 393 TPGLIERRLSLIKFDDDE-DFLREIIEQAAREAEERGRFEDAILLYHLAEEYD-------KVLSLLNRLLSQVLSQ-PSS 463 (613)
T ss_dssp EE-HHHHTGGGGT-SSSS-HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HH-------HHHHHHHHHHHHHHHC-SST
T ss_pred ccceeeccccccCCCCcH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHcC-ccc
Confidence 345566655555543322 2357788889999999999999999997664442 12233333333 2332 221
Q ss_pred ---ChhHHHHHHHHHHHHHHhhhh-----------hhhHHHHhHHHHHH--HHHhccHHHHHHHHHHHHhh
Q 014350 111 ---NFSLLREFYQTTLKALEEAKN-----------ERLWFKTNLKLCKI--WFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 111 ---~~~~~~~~~~~~l~~l~~~~~-----------~kl~~r~~~~La~~--~~~~g~~~~A~~ll~el~~~ 165 (426)
.......++..+.+.++..+. .+--+.+.++++.+ ++..|+|++|.+.++++.-.
T Consensus 464 ~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~li 534 (613)
T PF04097_consen 464 SSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLI 534 (613)
T ss_dssp SSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S
T ss_pred cccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 111223333333333332211 12233666677776 56779999999999999755
No 291
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=60.51 E-value=53 Score=30.42 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=46.3
Q ss_pred hccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
...-...||.++||+.++++...+-+.|.+|-..|.|.-..|..+..|.++++
T Consensus 15 ~l~~~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTek 67 (217)
T PRK14165 15 AVNNTVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITEK 67 (217)
T ss_pred ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHH
Confidence 33445589999999999999999999999999999999999887778888776
No 292
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=60.46 E-value=29 Score=31.11 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=45.0
Q ss_pred cCChhHHHHHHHHH--HHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEE
Q 014350 325 MDDPFIRNYIEDLL--KNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (426)
Q Consensus 325 ~~D~~l~~~~~~L~--~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akI 389 (426)
..||.+...+..+. ..-.. .++..+.....++-++||+.+|++..+|-+.|.+|-.+|.+..+-
T Consensus 5 ~~~~~v~~~l~~~~~~~~~~~-~Vl~~L~~~g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 5 LNNPLVQKVLFEIMEGDEEGF-EVLKALIKKGEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hcCHHHHHHHHHHhcCCccHh-HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEee
Confidence 35666655444443 11111 233334455789999999999999999999999999999997543
No 293
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=60.24 E-value=2.9e+02 Score=31.02 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.-++.+|+..|-..|+..++...|+.-..+-
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999887774
No 294
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.01 E-value=23 Score=29.67 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=37.2
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
|+.+++-.-++|+.+++..+|++-..++..+.+|+..|.|.
T Consensus 17 IvElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~ 57 (127)
T PF06163_consen 17 IVELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLY 57 (127)
T ss_pred HHHHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeE
Confidence 35566778899999999999999999999999999999985
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=60.00 E-value=33 Score=30.77 Aligned_cols=52 Identities=25% Similarity=0.364 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHhhhh
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSA 87 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~----~~~~l~e~~~~l~~~~~~~ 87 (426)
+++|+..|++.+..+|+. -.++-.++..|...+ +-.++.++|.+-..++...
T Consensus 51 iedAisK~eeAL~I~P~~----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 578999999999988854 356666666665544 4556667777766666333
No 296
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=59.74 E-value=21 Score=31.48 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=40.3
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++.+.||+.+++|...+++.+..|-..|.+...=....|+.-..++
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCH
Confidence 479999999999999999999999999999998855666665544444
No 297
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.03 E-value=35 Score=33.20 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
+.+++++|++.|+..++-. +...-.-.+++-.+++.|+++.++.++..+...
T Consensus 156 kegqyEaAvqkFqaAlqvs----GyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVS----GYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccccHHHHHHHHHHHHhhc----CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4567888888888876542 222333456777888888888888888777554
No 298
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.83 E-value=34 Score=30.66 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCC-ChHH
Q 014350 293 PEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKD 371 (426)
Q Consensus 293 ~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l-~~~e 371 (426)
..+..+..|.....++++..|=+..+.+.+.+ +++.-+.+.||.-+-..+.-.|..|.=.-+|+++|- +-.+
T Consensus 96 e~~r~ii~L~~~LEt~~Fq~FW~~~~~N~~ml-------e~itGFedsvr~yachvv~iTyQkI~k~lLaellG~~sDs~ 168 (217)
T KOG3252|consen 96 EPFRSIIDLGDYLETCRFQQFWQEADENRDML-------EGITGFEDSVRKYACHVVGITYQKIDKWLLAELLGGLSDSQ 168 (217)
T ss_pred cchhHHHhHHHHHhhchHHHHhhhhccchHHh-------cCCCcHHHHHHHHHHHheechHhhchHHHHHHhhCcccHHH
Confidence 44566677888889999998876666554433 455556666665555556667999999999999984 6779
Q ss_pred HHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 372 VEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 372 vE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+|.++.+ +|-+...+|.+.+-
T Consensus 169 le~~~~~-------~GW~a~e~G~ifv~ 189 (217)
T KOG3252|consen 169 LEVWMTK-------YGWIADESGQIFVA 189 (217)
T ss_pred HHHHHHH-------ccceecCCceEEEe
Confidence 9999888 78899999955543
No 299
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=58.81 E-value=32 Score=27.18 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=39.9
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.-..++-.+||+.+|++.+-|-+.|.+|...|.|. .+...|.+-++.+
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~--r~~~~~~~~~n~~ 91 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIF--RQGMMGIVGVNTP 91 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCee--eecCCceeecCCC
Confidence 35688899999999999999999999999999996 3455677766643
No 300
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=58.76 E-value=16 Score=34.51 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=40.2
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
|...|+.+++....++..++|+.||+|+.-+.+.|..|-..|.|.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 555678888889999999999999999999999999998888874
No 301
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=58.60 E-value=10 Score=34.14 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
|.+.|+.++.-...+++.++|+.||+|..-+-+-|..|-.+|.+
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~ 51 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELR 51 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHH
Confidence 66778888888999999999999999999999999999888876
No 302
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=58.55 E-value=54 Score=28.08 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
++.++|++.|.+.+..-++. ..+|++=++.++-+|+.+++++-+..-+.+- ...++.+-..-|+
T Consensus 57 g~Ld~AlE~F~qal~l~P~r----aSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~vQ 120 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPER----ASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFVQ 120 (175)
T ss_pred cchHHHHHHHHHHHHhcccc----hHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHHH
Confidence 46788888888888766532 4567777888888888888888888777775 4444444444443
No 303
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=58.37 E-value=16 Score=34.69 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 341 l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
-|...|+.+++-...+++.+||+.|++|+..+-+.|..|-..|.+.
T Consensus 5 ~R~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~ 50 (252)
T PRK10906 5 QRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKIL 50 (252)
T ss_pred HHHHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3666778888889999999999999999999999999999999873
No 304
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=58.20 E-value=31 Score=28.70 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=37.0
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.++.+.||+.+++|...+.+.+..|...|.|...-....|+ ...++
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy-~l~~~ 70 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGY-RLARP 70 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCc-cCCCC
Confidence 79999999999999999999999999999987643444454 34443
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.13 E-value=20 Score=19.95 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.++..++.++...|+++++...++..++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678899999999999999999887665
No 306
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=57.90 E-value=13 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=35.6
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
..++..+||+.+|+|...+.+.+..|...|.|.+.-....|.
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~ggy 65 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGGY 65 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCCh
Confidence 579999999999999999999999999999997754333343
No 307
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.21 E-value=1.9e+02 Score=27.91 Aligned_cols=104 Identities=12% Similarity=0.112 Sum_probs=73.5
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
++.+-++.++...|+|.-....+.++.+.-.. +.--.+..-+|+....||..-|+.+.+...+.++...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-----------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~ 246 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-----------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD 246 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 45677888999999999999999999986321 1223444556888889999999999997766554433
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.-.-..-.-.-++.+|...+||..|...|-++..+
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 21111112234567888899999999999888653
No 308
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.13 E-value=92 Score=24.32 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=45.4
Q ss_pred HHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 147 ~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
...|||.+|.+.|...-..+........ ....-.-.+....++...|++.+|...++.+..+.....+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~---~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSS---NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchh---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 4579999999999998887654321110 0122233455667888889999998888888666554444
No 309
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.97 E-value=2.3e+02 Score=28.88 Aligned_cols=183 Identities=11% Similarity=0.083 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHhcCCCCC---ChhHHHHHHHHHHHH
Q 014350 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---RNYSEKCINNIMDFVSGSASQ---NFSLLREFYQTTLKA 125 (426)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~---k~~~~k~v~~il~~~~~~~~~---~~~~~~~~~~~~l~~ 125 (426)
+..-.+..++++++-.|+|+.+..+|..+.+-++.... =+.+.+|+--.+ .+...+-. ..+.....++.+...
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl-~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSL-LMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHH-HhcCCCCccccccccHHHHHHHHHHH
Confidence 44567778999999999999999999999988833322 122222221111 11111100 112334444444443
Q ss_pred HHhh-----hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHH
Q 014350 126 LEEA-----KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (426)
Q Consensus 126 l~~~-----~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~k 200 (426)
-..+ +....-+|+.+-.+.++...|.|.+|...+-+...++-. .+- +..-.-++++++-.|..
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l--~~~~~alllE~~a~~~~------ 352 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDL--RPFGSALLLEQAAYCYA------ 352 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhh--hhHhhHHHHHHHHHhhc------
Confidence 3321 111233488889999999999998887766666554210 010 00002344444444440
Q ss_pred HHHHHHHHHhhhccCCC---hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 201 LKQLYQKALAIKSAIPH---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 201 ak~~l~~a~~i~~~~~~---p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
........+. -+-.+--....|.-+...+....|.++|..+...|..
T Consensus 353 -------~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 353 -------SLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred -------ccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 0000000000 1112233457788888899999999999999887753
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.85 E-value=19 Score=32.92 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEM 73 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l 73 (426)
+.|+++|+..|..+++...++..-....+..|+.++.++|+++.+
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 567888999999888876533233466788888999998888865
No 311
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=56.45 E-value=27 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=24.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+...|++.||+.+|+|...|-....+++.
T Consensus 18 ~~~~t~~eIa~~lg~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRSTVRRILKRALK 46 (50)
T ss_dssp TST-SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 78899999999999999999988877764
No 312
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=56.01 E-value=31 Score=31.42 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEE-----ecCCCEEEEecC
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI-----DQVNRLLERGDR 401 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akI-----D~~~g~v~~~~~ 401 (426)
.|+.++.....++...||+.+|++...|-..|.+|...|.|.-+- +++...+.++++
T Consensus 5 ~IL~~L~~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~ 66 (203)
T TIGR02702 5 DILSYLLKQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQ 66 (203)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcc
Confidence 344444445679999999999999999999999999999997552 344444455543
No 313
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=55.93 E-value=26 Score=26.89 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHhcccc-ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 346 LLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 346 l~~i~~pY-s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
++.++... ..+++..||+.+|+|...+-+.+..|...|-|... ..+|...+.
T Consensus 10 Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~--~~~~~y~l~ 62 (91)
T smart00346 10 VLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQD--GQNGRYRLG 62 (91)
T ss_pred HHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeec--CCCCceeec
Confidence 34444334 47999999999999999999999999999998652 234544443
No 314
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.82 E-value=1.7e+02 Score=27.35 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 32 PEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
....|+++.+.++.-+ ...........+++.-|+..|+|+++..++..+....
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~y 208 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSY 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566777777765433 1233445666788999999999999999999886554
No 315
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=55.55 E-value=33 Score=30.05 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=37.0
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE-E-EecCCCEEEE
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG-H-IDQVNRLLER 398 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a-k-ID~~~g~v~~ 398 (426)
..+-++-++||+.+|++..+|-+.|-+|-.+|.+.- + =|..+|....
T Consensus 25 ~~~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y 73 (158)
T TIGR00373 25 IKGEFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEY 73 (158)
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEE
Confidence 356799999999999999999999999999999942 2 1344454443
No 316
>PF13041 PPR_2: PPR repeat family
Probab=55.44 E-value=25 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
-++..++..|.+.|+++++.+++.++.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35677899999999999999999999765
No 317
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=55.32 E-value=18 Score=34.37 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
|.+.|+++++.-..|+++++|+.||+|+..+.+-|..|=..|.+.
T Consensus 6 R~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~ 50 (253)
T COG1349 6 RHQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLL 50 (253)
T ss_pred HHHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEE
Confidence 777889999999999999999999999999999999999998874
No 318
>PF12854 PPR_1: PPR repeat
Probab=54.62 E-value=21 Score=22.24 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREM 80 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (426)
.-.+..|+..|.+.|+.++|.+.+..+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356778999999999999999988764
No 319
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=53.64 E-value=3e+02 Score=29.24 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~ 219 (426)
+-+|+.|--+|+-++|...+...-+...+ +--+ .-++.. =|.+++|+..|...+..|..+.+. +|.
T Consensus 350 l~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP------~LYlgm---ey~~t~n~kLAe~Ff~~A~ai~P~--Dpl 415 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLP------SLYLGM---EYMRTNNLKLAEKFFKQALAIAPS--DPL 415 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHHHHHhccC---Ccch------HHHHHH---HHHHhccHHHHHHHHHHHHhcCCC--cch
Confidence 45667777777777777777776666432 1111 111111 255677788888877777665432 344
Q ss_pred HHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 220 IMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 220 ~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
+. ...|.+...-+.|.+|..+|..+.
T Consensus 416 v~----~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 416 VL----HELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred hh----hhhhheeehHhhhHHHHHHHHHHH
Confidence 32 223455556677788888877775
No 320
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=53.27 E-value=40 Score=24.50 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=35.2
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
.....+..+||+.+|+|...|-+.|.+|...|.+.-.-..
T Consensus 19 ~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 19 KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 5678999999999999999999999999999999654433
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.93 E-value=56 Score=25.59 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 014350 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 35 Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (426)
.++.++.-++.+|++ ..+..+++..+...|+++++++.+-.+...- +.-.....-+.+=.+++.+.
T Consensus 7 ~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcC
Confidence 455666667777765 4678889999999999999999888887765 44445555555555555554
No 322
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=52.79 E-value=29 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.9
Q ss_pred cccchhHHhHhCCC-hHHHHHHHHHhHHcCcee
Q 014350 355 RIRIPFISKELNVP-EKDVEQLLVSLILDNRID 386 (426)
Q Consensus 355 ~I~l~~iA~~l~l~-~~evE~~l~~lI~~g~i~ 386 (426)
.-|+.+||+.||++ ..-|-..|..|...|.|.
T Consensus 25 ~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 25 PPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 45999999999995 999999999999998874
No 323
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=52.75 E-value=3.6e+02 Score=29.79 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+..-.|..+...|+-++|...|.|..+.+.. ..-++-.-.+.+...|.+..|++.+..|..++
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPL------------SASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 33445566666666667777777777666421 22233333455666677777777777665554
No 324
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=52.51 E-value=20 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.2
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
..+++.++|+.||++...+...|.+...
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae~ 49 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAER 49 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5999999999999999988888877543
No 325
>PF13730 HTH_36: Helix-turn-helix domain
Probab=51.98 E-value=19 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=27.2
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
-|.+.||+.+|++...|.+.+-+|...|-|
T Consensus 26 pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 389999999999999999999999988854
No 326
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=51.72 E-value=44 Score=27.28 Aligned_cols=50 Identities=6% Similarity=0.089 Sum_probs=41.8
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
....++..+||+.++++...+-..|-+|...|.|...-|..++ .|..+++
T Consensus 39 ~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~ 91 (118)
T TIGR02337 39 EQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPK 91 (118)
T ss_pred HcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHh
Confidence 3557899999999999999999999999999999988866665 5555554
No 327
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=51.67 E-value=32 Score=26.58 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=36.7
Q ss_pred HhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC
Q 014350 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (426)
Q Consensus 348 ~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~ 392 (426)
.++..-..++.++||+.++++...+-..|.+|...|.|...-|..
T Consensus 17 ~~l~~~~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~ 61 (101)
T smart00347 17 RILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPE 61 (101)
T ss_pred HHHHHcCCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCC
Confidence 333333468999999999999999999999999999997665543
No 328
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.17 E-value=1.4e+02 Score=24.82 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHhh---hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 113 SLLREFYQTTLKALEEA---KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 113 ~~~~~~~~~~l~~l~~~---~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
+.+..+++.|...+... .|+..++++-++.|++.- ++.+++..+...-- | .....++..=+
T Consensus 43 ~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~I---G-------~~~A~fY~~wA 106 (126)
T PF08311_consen 43 SGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGI---G-------TKLALFYEEWA 106 (126)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTT---S-------TTBHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCc---c-------HHHHHHHHHHH
Confidence 45566666666665442 244556666666555332 77788888877632 2 33456666667
Q ss_pred HHHHhhcCHHHHHHHHHHH
Q 014350 190 QMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a 208 (426)
.++...|++.+|..++..+
T Consensus 107 ~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhh
Confidence 7888899999999988764
No 329
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=50.86 E-value=22 Score=27.37 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=28.6
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHH
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 376 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l 376 (426)
|..-|..++.- .++++.++|+.+|+|..-|-..|
T Consensus 7 R~~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L 40 (80)
T TIGR02844 7 RVLEIGKYIVE-TKATVRETAKVFGVSKSTVHKDV 40 (80)
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHh
Confidence 55566777777 99999999999999999887755
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.46 E-value=1.2e+02 Score=33.69 Aligned_cols=58 Identities=14% Similarity=0.331 Sum_probs=37.9
Q ss_pred chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHhcC
Q 014350 49 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 49 ~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il~~~~~ 106 (426)
+.+.....-..-|.-++..|++++|.++|.+-.++.++. +.|=--+..|+++..++..
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~ 422 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEA 422 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHH
Confidence 344455666677899999999999999999887776443 1122223455555555543
No 331
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=50.28 E-value=24 Score=33.82 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=40.2
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
|...|+.+++...+++..+||+.||+|+.-+.+-|..|-..|.+.
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 566778888888889999999999999999999999998988885
No 332
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.21 E-value=4.2e+02 Score=30.61 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=35.4
Q ss_pred hhcccCCCC-HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 23 LEKGLVETD-PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 23 ~ak~~~~~~-~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
+-|+++..| |.+-|+++++|+-.++.-.+ -+.|.++.-+-.-.-+.....+|+.+|-.+
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse--~~nLQnLLiLtAikad~trVm~YI~rLdny 1049 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSE--NRNLQNLLILTAIKADRTRVMEYINRLDNY 1049 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCccccc--chhhhhhHHHHHhhcChHHHHHHHHHhccC
Confidence 446777777 89999999999876652111 234455544444444555555555555333
No 333
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=49.92 E-value=4.5e+02 Score=30.15 Aligned_cols=195 Identities=11% Similarity=0.130 Sum_probs=118.2
Q ss_pred hHHHHhhcccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014350 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (426)
Q Consensus 18 ~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (426)
-..|+.|......+...|+..|-+.+..++.- ..+.-.+|.+|+.--+...+...|..-..+- +.. ...++
T Consensus 460 ~~~~w~a~~~~rK~~~~al~ali~alrld~~~----apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atd--aeaaa-- 530 (1238)
T KOG1127|consen 460 NSEFWVALGCMRKNSALALHALIRALRLDVSL----APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATD--AEAAA-- 530 (1238)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chh--hhhHH--
Confidence 35678888899999999999999999887642 5667778999988888888888888776663 221 11111
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh---hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcc
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d 174 (426)
.+.+.+.+.|+ .+.. ...++..-+... -+-.|++ +|-.|.+.|+...|..-++.-... ++
T Consensus 531 -a~adtyae~~~--we~a---~~I~l~~~qka~a~~~k~nW~~----rG~yyLea~n~h~aV~~fQsALR~-------dP 593 (1238)
T KOG1127|consen 531 -ASADTYAEEST--WEEA---FEICLRAAQKAPAFACKENWVQ----RGPYYLEAHNLHGAVCEFQSALRT-------DP 593 (1238)
T ss_pred -HHHHHhhcccc--HHHH---HHHHHHHhhhchHHHHHhhhhh----ccccccCccchhhHHHHHHHHhcC-------Cc
Confidence 12344444454 2222 222333222211 1113433 778888999988887666665544 22
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh-HHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 175 ~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+ -++...--+..|.+.|.+..|-...++|.-. +|. .-++++. +.+.+..|+|++|..-+-....
T Consensus 594 k-----D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~--A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 594 K-----DYNLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKE--AVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred h-----hHHHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHH--HHHHHHhhhHHHHHHHHHHHHH
Confidence 2 2344455567888888888887776666332 232 2233333 3445566777777766666543
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.73 E-value=58 Score=27.90 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
|..+-|.+|+++++.++ .+.....+..|+--|++.|+|++++.++..++..-
T Consensus 50 dv~~GI~iLe~l~~~~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAH--PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHhHHHHHHHhhhcC--cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 57899999999997332 22246788889999999999999999999887763
No 335
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=49.70 E-value=39 Score=22.19 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=29.7
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHH
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTF 407 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~ 407 (426)
++++++|+.+|++...+.. ++.+|.|.+... .+... .++.+.+.+
T Consensus 2 lt~~e~a~~lgis~~ti~~----~~~~g~i~~~~~--g~~~~-~~~~~l~~~ 46 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYR----LIHEGELPAYRV--GRHYR-IPREDVDEY 46 (49)
T ss_pred CCHHHHHHHHCCCHHHHHH----HHHcCCCCeEEe--CCeEE-EeHHHHHHH
Confidence 5788999999999876664 567899987543 24333 344444433
No 336
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=49.58 E-value=21 Score=33.71 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 341 l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
=|...|+.++..+.+|+..+||+.||+|++-+.+-|..|=
T Consensus 7 eR~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le 46 (252)
T PRK10681 7 ERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHS 46 (252)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhh
Confidence 3777889999999999999999999999999999998754
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.34 E-value=93 Score=32.15 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH
Q 014350 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (426)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~ 136 (426)
...++..+.++|.++.|++..+.-...++=.+ ..--++.+++..+...+.-.|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl--------------------------~lg~L~~A~~~a~~~~~~~~W- 350 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELAL--------------------------QLGNLDIALEIAKELDDPEKW- 350 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHH--------------------------HCT-HHHHHHHCCCCSTHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHH--------------------------hcCCHHHHHHHHHhcCcHHHH-
Confidence 34566667777777777777666555551111 011122233332222222222
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~ 209 (426)
.+||+..+..|+++-|.+.+++.+.. + .+ .-+|...||..+.+.+.+.|.
T Consensus 351 ---~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~----~L--------~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 351 ---KQLGDEALRQGNIELAEECYQKAKDF--------S----GL--------LLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp ---HHHHHHHHHTTBHHHHHHHHHHCT-H--------H----HH--------HHHHHHCT-HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHhhcCc--------c----cc--------HHHHHHhCCHHHHHHHHHHHH
Confidence 57889999999999998888877555 1 11 125777888888888766654
No 338
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.11 E-value=3.2e+02 Score=27.98 Aligned_cols=202 Identities=15% Similarity=0.186 Sum_probs=104.9
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHH-HhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh------------h
Q 014350 186 AIEIQMYTETKNNKKLKQLYQKA-LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN------------Y 252 (426)
Q Consensus 186 l~e~rl~~~~~d~~kak~~l~~a-~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~------------~ 252 (426)
+--.|++..+||+.-.-+.++.- +.+-+.+ |..+- -.+-|..|+-.|+|.+|.+-|..+... |
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~--p~c~V--TY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y 314 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTE--PMCRV--TYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTY 314 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcc--cceeE--eeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 33458888899954433333321 1111111 32221 156688899999999999999998532 1
Q ss_pred hh-hcchhHHHHHHHHHHHHHhhCCCCC-CCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHH-------
Q 014350 253 DE-AGNQRRIQCLKYLVLANMLMESEVN-PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKT------- 323 (426)
Q Consensus 253 ~~-~~~~~~~~~lky~~L~~lL~~~~~~-~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~------- 323 (426)
.. ..+.++.+....+.+|..+-+..++ .+.++..-+|- ++-+ . -++++...|.+...--.+.
T Consensus 315 ~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~-d~ml----~----mqng~~q~~ks~f~y~cpkflsp~~~ 385 (525)
T KOG3677|consen 315 QYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYG-DKML----P----MQNGDPQVFKSLFSYLCPKFLSPVVP 385 (525)
T ss_pred hHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhc-chhh----h----hhcCChHHHHHHHHHcCccccCCCCc
Confidence 10 1111233332223333333222122 12222111111 1110 0 1335555555443221111
Q ss_pred --------hcCChhHHHHHHHHHHHHHHH----HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHH----------
Q 014350 324 --------IMDDPFIRNYIEDLLKNVRTQ----VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLIL---------- 381 (426)
Q Consensus 324 --------l~~D~~l~~~~~~L~~~l~~~----~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~---------- 381 (426)
...+|++++ +..+.+.+... .++.+.+-|++...+-+|..++++.++=.+.+.+++.
T Consensus 386 ~~dgv~~~y~kePl~~q-lq~fld~v~qq~dl~~~rsylklyTt~P~kkla~F~D~~d~~~dk~li~Ll~~khkm~nlv~ 464 (525)
T KOG3677|consen 386 NYDGVLPNYHKEPLLQQ-LQVFLDEVSQQADLPTIRSYLKLYTTLPVKKLASFLDLTDQERDKFLIQLLVFKHKMKNLVW 464 (525)
T ss_pred ccccccccccccHHHHH-HHHHhHHHhhhccchHHHHHHHHHHhccHHHhhhccCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 225565543 34445555544 6788888899999999999999998887777777764
Q ss_pred -cCceeEEEe-cCCCEEEEecC
Q 014350 382 -DNRIDGHID-QVNRLLERGDR 401 (426)
Q Consensus 382 -~g~i~akID-~~~g~v~~~~~ 401 (426)
.|.....++ ++...|-|.-+
T Consensus 465 ~sg~s~~d~~f~~~s~idfyid 486 (525)
T KOG3677|consen 465 TSGPSDLDDAFFSRSEIDFYID 486 (525)
T ss_pred hcCCccccccccCcceeeEEec
Confidence 444555555 33334555433
No 339
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.93 E-value=3.1e+02 Score=27.66 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=53.1
Q ss_pred ecccchhhHhHHHHhhcccCC-CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHh
Q 014350 9 FSDEFTVSRVLCSILEKGLVE-TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY--YRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 9 ~~~~~~~~~~~~~~~ak~~~~-~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~--~~~~~~~~l~e~~~~l~~~~ 84 (426)
..|..++-.++..-.|+.+.+ .++..|.+.|..+...-++..+ ++.+..++..| ++.-++.+|.+++..+.+..
T Consensus 123 ~~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 123 LENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 344555556667777776654 4899999999999875222222 67788887654 78889999999998887764
No 340
>PRK15331 chaperone protein SicA; Provisional
Probab=47.58 E-value=45 Score=29.46 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREML 81 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~ 81 (426)
++++++|...|+-+.-.+. |..+-...|+-+|-..|+|++|.+.|..-.
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~----~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDF----YNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred CCCHHHHHHHHHHHHHhCc----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999998877654 335556778888888888888888887653
No 341
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=47.55 E-value=23 Score=28.47 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=27.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
...++-++||+.+|++..++-+.|.+|-.+|.+..+
T Consensus 25 ~~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 25 KGELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp H--B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEE
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEE
Confidence 467888999999999999999999999999999654
No 342
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=46.64 E-value=62 Score=29.40 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=34.2
Q ss_pred ccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEE
Q 014350 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (426)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akI 389 (426)
+.....++...||+.+|++...+-+.|.+|...|.|.-.-
T Consensus 152 l~~~g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 152 LKAEGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKG 191 (203)
T ss_pred HHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 3334579999999999999999999999999999997553
No 343
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=46.50 E-value=44 Score=25.25 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=35.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
....+..+|+...|++...+.+.|-.|+..|.| ...++...++++
T Consensus 17 ~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI----~~~~~~Y~lTek 61 (77)
T PF14947_consen 17 KGGAKKTEIMYKANLNYSTLKKYLKELEEKGLI----KKKDGKYRLTEK 61 (77)
T ss_dssp TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSE----EEETTEEEE-HH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCe----eCCCCEEEECcc
Confidence 578889999999999999999999999999999 346777777765
No 344
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=46.30 E-value=1.1e+02 Score=31.70 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=49.3
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
....++|..|...|+|++|...+++....-.+ + ...-..+....-.|..+|++.+|...++++...
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-----~----aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPN-----P----DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----c----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34578999999999999999999998887432 1 101012344456788899999999999998665
No 345
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=46.14 E-value=40 Score=27.86 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=37.1
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEE
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI 389 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akI 389 (426)
.|..++.. ..|..+||..+++|..-+.-+++.|+..|.+..+-
T Consensus 47 ~Il~lC~~--~~SVAEiAA~L~lPlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 47 AILELCRR--PLSVAEIAARLGLPLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred HHHHHHCC--CccHHHHHHhhCCCchhhhhhHHHHHhCCCEEEeC
Confidence 44566665 88999999999999999999999999999987643
No 346
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=46.12 E-value=32 Score=24.94 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=26.2
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHHH
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
++..-+.+.=-.|++.+||+.||++...|..+=++
T Consensus 11 kA~e~y~~~~g~i~lkdIA~~Lgvs~~tIr~WK~~ 45 (60)
T PF10668_consen 11 KAFEIYKESNGKIKLKDIAEKLGVSESTIRKWKSR 45 (60)
T ss_pred HHHHHHHHhCCCccHHHHHHHHCCCHHHHHHHhhh
Confidence 34444444445899999999999999988876554
No 347
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=46.02 E-value=51 Score=30.52 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
.|+.+++--..+|..+||+.||++..-|-..+-.|..+|.+...
T Consensus 15 ~il~lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~ 58 (218)
T COG2345 15 RILELLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVE 58 (218)
T ss_pred HHHHHHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeee
Confidence 34556666789999999999999999999999999999999877
No 348
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.22 E-value=3.2e+02 Score=26.74 Aligned_cols=126 Identities=10% Similarity=0.136 Sum_probs=77.1
Q ss_pred HHHHHH-HHHhcCCccch-hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHhcCCCCC
Q 014350 34 GALAGF-AEVVAMEPEKA-EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVSGSASQ 110 (426)
Q Consensus 34 ~Ai~~~-~~ii~~~~~~~-~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i-l~~~~~~~~~ 110 (426)
+-|+.| ++|-+.+.+++ ..+..+-.+++..|++.++-+...++...+...- ..+..+++-++..+ +.++- .|
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--~stg~KiDv~l~kiRlg~~y--~d- 167 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--MSTGLKIDVFLCKIRLGLIY--GD- 167 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhcccchhhHHHHHHHHHhh--cc-
Confidence 445555 33433333443 3478899999999999999999999998876663 23445555555443 23332 12
Q ss_pred ChhHHHHHHHHHHHHHHhhh--hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 111 NFSLLREFYQTTLKALEEAK--NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~--~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
.....+.++.+-..++.-+ +.|...++ -.|-+.....++.+|+.++.+...-..
T Consensus 168 -~~vV~e~lE~~~~~iEkGgDWeRrNRyK~--Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 -RKVVEESLEVADDIIEKGGDWERRNRYKV--YKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred -HHHHHHHHHHHHHHHHhCCCHHhhhhHHH--HHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4455666665555554311 22222222 345566677899999999999877653
No 349
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=43.80 E-value=50 Score=23.50 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=29.1
Q ss_pred HHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
|+..|+.++---..++++++|+.+|+|.-.+...|..+=
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555337799999999999999999988888753
No 350
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.63 E-value=3.2e+02 Score=26.68 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~ 111 (426)
.+.-+..|++.++.+++. .+.+....+++.+..+.+++.+-...++... +. .-.-..+-+.-....+. .-+
T Consensus 47 ~E~klsilerAL~~np~~----~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~-~~~LW~~yL~~~q~~~~---~f~ 117 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS----ERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PG-SPELWREYLDFRQSNFA---SFT 117 (321)
T ss_pred HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CC-ChHHHHHHHHHHHHHhc---cCc
Confidence 356677777777776533 4556666677777778888888887777775 43 11112222222222221 123
Q ss_pred hhHHHHHHHHHHHHHHhhhhh------------hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 112 FSLLREFYQTTLKALEEAKNE------------RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~~~------------kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
.+.+...|..|+..+.....+ ...+.+-++++.+..+.|-.+.|..++|-+...+.
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 567788888888887764433 35668888999999999999999999999988765
No 351
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=43.29 E-value=72 Score=24.34 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
|+.+...-..++|++|.+.+|++...+-..|..|...|-|..+-...++
T Consensus 5 Il~~L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~ 53 (80)
T PF13601_consen 5 ILALLYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGR 53 (80)
T ss_dssp HHHHHHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS
T ss_pred HHHHHhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 4444445678999999999999999999999999999999877666555
No 352
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=43.05 E-value=4.8e+02 Score=28.46 Aligned_cols=122 Identities=11% Similarity=0.177 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhcCCcc-------------chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014350 31 DPEGALAGFAEVVAMEPE-------------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~-------------~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (426)
+.+-...-|+++++..+- -.+|.. .+-...|++.+-...|+...+...|....+...+.-
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k-------RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK-------RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLW 390 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh-------hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHH
Confidence 456666777777765441 023422 234556777788888887777665666566666666
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhh--HHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL--WFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl--~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
-...+++..+.+ .+....+.+.+.. ++.+.+ ...+-..-|..-+...+++.|.++++.....
T Consensus 391 ~~faklYe~~~~--l~~aRvifeka~~----V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 391 VEFAKLYENNGD--LDDARVIFEKATK----VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHhcCc--HHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 666666665443 3344444443333 122211 0122233344445556778888888877654
No 353
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=41.77 E-value=71 Score=30.01 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=40.9
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.-+....-++.-++||..+|++++-|-..+-+|+.+|.|+- +..|.-+++++
T Consensus 17 ~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkk 68 (260)
T COG1497 17 SEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK---EGRGEYEITKK 68 (260)
T ss_pred HHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHHHhccceee---cCCeeEEEehh
Confidence 33334446899999999999999999999999999998865 45555666665
No 354
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=41.65 E-value=65 Score=21.14 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
...+...+|+.+|++...+-..+.+..
T Consensus 25 ~~~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 25 EGLSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 788999999999999999988887654
No 355
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=41.49 E-value=1.1e+02 Score=27.90 Aligned_cols=63 Identities=8% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
.+.+++.|++.-+..-+.|=.+++-..||+.||+|..-|-.-|..|..+|.|.- -+..|+.+.
T Consensus 9 ~~~vy~~i~~~I~~g~l~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~ 71 (224)
T PRK11534 9 ALDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTV--VNQKGYRVA 71 (224)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEE--eCCCceEeC
Confidence 356777777777777778888999999999999999999999999999999964 344565443
No 356
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=41.36 E-value=15 Score=31.84 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=12.5
Q ss_pred HHHHhcCceeehhhhhh
Q 014350 407 FLLLKKNAYLTCSYLVS 423 (426)
Q Consensus 407 ~~~~~~~~~~~~~~~~~ 423 (426)
.++++||+|+|+|+|-+
T Consensus 77 ~le~~rg~Y~TiSeLKT 93 (148)
T PF12486_consen 77 QLEEQRGKYMTISELKT 93 (148)
T ss_pred HHHHhcCCceeHHHHHH
Confidence 45677888888888754
No 357
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=41.29 E-value=35 Score=27.45 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=33.1
Q ss_pred cccccccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
++..+|+.+.+|++.|++.+.|.+.+..||..|.|
T Consensus 50 Kk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 50 KKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVI 84 (100)
T ss_pred CccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 56679999999999999999999999999999998
No 358
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=41.22 E-value=81 Score=23.24 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.5
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
-+++..-...|++.|++..+++.+++---|.=+..+++|. +++.+|.+.+
T Consensus 14 w~~L~~~~~~s~~el~k~~~l~~~~~~~AiGWLarE~KI~--~~~~~~~~~v 63 (65)
T PF10771_consen 14 WQLLNENGEWSVSELKKATGLSDKEVYLAIGWLARENKIE--FEEKNGELYV 63 (65)
T ss_dssp HHHHCCSSSEEHHHHHHHCT-SCHHHHHHHHHHHCTTSEE--EEEETTEEEE
T ss_pred HHHHhhCCCcCHHHHHHHhCcCHHHHHHHHHHHhccCcee--EEeeCCEEEE
Confidence 4455556789999999999999999999999999999984 4566666654
No 359
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=40.58 E-value=1.2e+02 Score=27.31 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+.+++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..|-.+|.|.- -+..|+++..-.
T Consensus 14 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~--~~~~G~~V~~~~ 78 (212)
T TIGR03338 14 TLVQDEIERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRN--EKNRGVFVREIS 78 (212)
T ss_pred HHHHHHHHHHHHcCCCCCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEE--ecCCCeEEecCC
Confidence 45667777666676778888999999999999999999999999999999864 445677665543
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.32 E-value=3.9e+02 Score=26.71 Aligned_cols=126 Identities=15% Similarity=0.165 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh-h
Q 014350 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-A 129 (426)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~-~ 129 (426)
.+-..+|-|++.++..+|+.+.+.+++.+-+-.+++.. . ...+.+.+.... + + . .+.. .
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~-~----~~F~~~~~~~~~--g-~--~----------rL~~~~ 96 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF-H----PSFSPFRSNLTS--G-N--C----------RLDYRR 96 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-H----HHhhhhhccccc--C-c--c----------ccCCcc
Confidence 46678999999999999999999999998877762221 1 111111111111 1 0 0 0111 1
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014350 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (426)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~ 206 (426)
.+.|-++....+........|-+..|.++-.=+....... |..-....++.++. +.+.+.=....++
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~----DP~g~ll~ID~~AL------rs~~y~~Li~~~~ 163 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE----DPLGVLLFIDYYAL------RSRQYQWLIDFSE 163 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC----CcchhHHHHHHHHH------hcCCHHHHHHHHH
Confidence 2567788888899999999999999999888888775431 33223444565554 3444544444444
No 361
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.01 E-value=1.9e+02 Score=28.76 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=61.8
Q ss_pred hccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhh
Q 014350 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 228 (426)
Q Consensus 149 ~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~ 228 (426)
.|++..-..-|+.++-.-++ | +. ....+-+-.+..-|++-++|..|...|+.+.+. ...+|.+.+.+|.--
T Consensus 55 ~gd~~~~~~~LqslK~da~E--~--ep---~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NR 125 (390)
T KOG0551|consen 55 EGDPNPDNVCLQSLKADAEE--G--EP---HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNR 125 (390)
T ss_pred CCCCCccHHHHHHhhhcccc--C--Ch---HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhH
Confidence 35554444445555443222 1 22 557788888888899999999999999988554 356788888777655
Q ss_pred HHHhHHhhcHHHHHHHHHHH
Q 014350 229 GKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 229 g~~~~~~~~y~~A~~~f~ea 248 (426)
+-.+.+-+||..|.+.-..+
T Consensus 126 AAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 126 AAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566678888877776666
No 362
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.36 E-value=5.4e+02 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 58 KQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
...++++.+.|.-..++|.|+.++-+
T Consensus 649 ~EAAklFk~~G~enRAlEmyTDlRMF 674 (1081)
T KOG1538|consen 649 HEAAKLFKRSGHENRALEMYTDLRMF 674 (1081)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 34567777888888888888877655
No 363
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=39.17 E-value=1.3e+02 Score=22.70 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=31.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
.+++++++-+.+|++.+.+--.|++|-..|.|.=
T Consensus 17 ~c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 17 RCCTLEELEEKTGISKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred ccCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeee
Confidence 3999999999999999999999999999999953
No 364
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=39.07 E-value=1.8e+02 Score=28.04 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
++.+...+++.+...|.++.+.+.++++-..-. .++ ..+..-|+.|...|+...|...|+...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp----~~E--------~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDP----YDE--------PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc----cch--------HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 336677999999999999999999999877521 122 35566678899999999999999887653
No 365
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=38.45 E-value=1.6e+02 Score=28.28 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=51.9
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchh----hHHHH--HhcCceeeh
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAY----LTFLL--LKKNAYLTC 418 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~----~~~~~--~~~~~~~~~ 418 (426)
.+..+.+| ++++.+.+..+++..-+-..+-++|..|.+.|+|-- + + +-|..+ ...|. -+-|||+..
T Consensus 185 ~l~a~T~P---t~l~~l~~~~~~~~~l~~~il~~Li~~~~l~G~i~G--~-~--yvP~iy~~~q~~~V~~f~~qNgyIe~ 256 (272)
T PF09743_consen 185 ALSAITRP---TPLSSLLKRYGFEEKLFQSILEELIKSGELPGSIVG--A-S--YVPDIYSQAQQEWVDNFFKQNGYIEY 256 (272)
T ss_pred HHhcCccc---eEHHHHHHHhCCcHHHHHHHHHHHHhcCcceEEEEC--C-E--EechHHHHHHHHHHHHHHHHcCcEeH
Confidence 33444444 889999999999999999999999999999999977 2 2 223222 11111 256899998
Q ss_pred hhhhhhcC
Q 014350 419 SYLVSELG 426 (426)
Q Consensus 419 ~~~~~~~~ 426 (426)
+.| +.||
T Consensus 257 ~~l-~~lg 263 (272)
T PF09743_consen 257 DAL-KRLG 263 (272)
T ss_pred HHH-HhcC
Confidence 887 5454
No 366
>PRK03837 transcriptional regulator NanR; Provisional
Probab=38.23 E-value=1.1e+02 Score=28.24 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+.+++.|++..+..-+.|=.++ +-..||+.||+|..-|-.-|..|-.+|.|.-+ +..|+.+..
T Consensus 16 ~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~--~~~G~~V~~ 79 (241)
T PRK03837 16 EEVEERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQIS--HGERARVSR 79 (241)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCCceeEec
Confidence 4577777777777777888899 89999999999999999999999999998764 556766554
No 367
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.09 E-value=94 Score=34.55 Aligned_cols=56 Identities=13% Similarity=0.288 Sum_probs=42.4
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
++|+..|+|.+|.+... ..|..........+.+++++++|..|++.+-+..+.|.+
T Consensus 366 k~yLd~g~y~kAL~~ar---------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIAR---------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHhcchHHHHHHhcc---------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 45778899999988522 236666666777788899999999999999888665543
No 368
>PF14493 HTH_40: Helix-turn-helix domain
Probab=38.04 E-value=36 Score=26.59 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=30.2
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCc-ee
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 386 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~-i~ 386 (426)
.-.+++.||+.-|+++..|+..|++++..|. ++
T Consensus 12 ~G~si~eIA~~R~L~~sTI~~HL~~~~~~g~~~~ 45 (91)
T PF14493_consen 12 KGLSIEEIAKIRGLKESTIYGHLAELIESGEPLD 45 (91)
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 4689999999999999999999999999998 54
No 369
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.75 E-value=50 Score=21.47 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=22.4
Q ss_pred HHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 224 IRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 224 i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+..-|-+.+...+|..|...|..+.+-
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455678888899999999999998653
No 370
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=37.42 E-value=2.5e+02 Score=23.59 Aligned_cols=69 Identities=12% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
+.||.=|.+.+.+....+ + .......+.+..-.-..+|....|.+.. ..+...+..=++++++.+++.+
T Consensus 2 enNp~IA~~~l~~l~~s~--~-------~~~yld~lv~~~~sl~s~EvVn~L~~~~--~~p~efl~~yI~~cI~~ce~~k 70 (126)
T PF10155_consen 2 ENNPNIAIEILVKLINSP--N-------FKEYLDVLVSMDMSLHSMEVVNRLTTSF--SLPQEFLHMYISNCIKSCESIK 70 (126)
T ss_pred CCcHHHHHHHHHHHcCCc--h-------HHHHHHHHHcCCCchhHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHhhc
Confidence 457888888888886554 1 3333444444455555556665555542 3345555555555555555433
No 371
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=37.21 E-value=3.8e+02 Score=29.96 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=22.2
Q ss_pred HHhHHHHHHH--HHhccHHHHHHHHHHHHhhcc
Q 014350 137 KTNLKLCKIW--FDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 137 r~~~~La~~~--~~~g~~~~A~~ll~el~~~~~ 167 (426)
.+.+++..++ +-.|++++|+.+++.++-.-.
T Consensus 706 ~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~ 738 (835)
T KOG2168|consen 706 SLLLDLVSFFDLYHNGEWEEALSILEHLDLIPL 738 (835)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCC
Confidence 3445666664 445889999999999987643
No 372
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.04 E-value=1.3e+02 Score=21.72 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=39.9
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHH
Q 014350 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f 245 (426)
-.+..++|-.|-+.++..-.....-....+++.|..+.|.+|...+|...|.+.|
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3457789999999999874322111225678999999999999999999887654
No 373
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.87 E-value=3.5e+02 Score=25.20 Aligned_cols=179 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HhHHHHhhcccCCCC-HHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHhhhhhh
Q 014350 17 RVLCSILEKGLVETD-PEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREML--TYIKSAVT 89 (426)
Q Consensus 17 ~~~~~~~ak~~~~~~-~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~--~~~~~~~~ 89 (426)
|..+.|.||-.-+.+ ++++++..+++++.++ +....-..++++++.-.+..=+.=...+.=..-. +.. ....
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~-~~~i 79 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQ-VKLI 79 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH-HHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHH-HHHH
Q ss_pred hhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH-HHhHHHHHHHHHhccH-------HHHHHHHHH
Q 014350 90 RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEY-------GRMSKILKE 161 (426)
Q Consensus 90 k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-r~~~~La~~~~~~g~~-------~~A~~ll~e 161 (426)
+.+..++...+.+.+.. ...+++..+---....+.++|+ +..=..-+...+...= ++|.+.+++
T Consensus 80 ~~yk~kie~EL~~~C~e--------ii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~ 151 (236)
T PF00244_consen 80 KDYKKKIEDELIDICNE--------IIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEE 151 (236)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhh
Q ss_pred HHhhcccCCCCcchhhhhhHHHHHHHHHHHHHh-hcCHHHHHHHHHHH
Q 014350 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKA 208 (426)
Q Consensus 162 l~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~-~~d~~kak~~l~~a 208 (426)
.........+..+ ...+.+.+.-+-++.. .|+..+|..+.+.|
T Consensus 152 A~~~a~~~L~~~~----p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 152 ALEIAKKELPPTH----PLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHhcccCCCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
No 374
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=36.79 E-value=37 Score=23.34 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=22.1
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
.+...+.++||+.+|+|+..|...+.+..
T Consensus 23 ~~~g~s~~eIa~~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 23 YFQGMSYAEIAEILGISESTVKRRLRRAR 51 (54)
T ss_dssp HTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788999999999999999999988764
No 375
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=36.77 E-value=3.4e+02 Score=25.21 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.1
Q ss_pred HHHhcc-ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC
Q 014350 346 LLKLIK-PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (426)
Q Consensus 346 l~~i~~-pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~ 392 (426)
++..++ |=...|-+.+|+.+|+|.-.+.++|--|+..|.+.+.|-.+
T Consensus 163 i~~~~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~~~l~a~i~yG 210 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGISRVTARRYLEYLVSNGILEAEIHYG 210 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhcCeeeEEeecc
Confidence 344443 55678899999999999999999999999999998877654
No 376
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=36.77 E-value=73 Score=25.24 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=31.4
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
|++.+.-+-.=.-..||..+++|.++|+..+-+|...|.|.
T Consensus 12 IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLle 52 (92)
T PF10007_consen 12 ILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLE 52 (92)
T ss_pred HHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 34444444444456789999999999999999999999874
No 377
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=36.39 E-value=78 Score=28.87 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=38.7
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~ 392 (426)
.-+.+.++-.+.+.||+.+++|+..|+.++..+...|.+...++..
T Consensus 169 ~~~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~~ 214 (225)
T PRK10046 169 KLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHG 214 (225)
T ss_pred HHHHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEeecC
Confidence 3334545567899999999999999999999999999998888764
No 378
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.21 E-value=2.6e+02 Score=23.54 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=70.6
Q ss_pred cccCCCCHHHHHHHHHHHhcCCc-----c-chhhhHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014350 25 KGLVETDPEGALAGFAEVVAMEP-----E-KAEWGFKALKQ--TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (426)
Q Consensus 25 k~~~~~~~~~Ai~~~~~ii~~~~-----~-~~~~~~k~l~~--l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (426)
+.+..+-+++|-..+.+.++... + -+...|.++-+ |...+...|+|++.++--..-+.++++.-
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG-------- 89 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG-------- 89 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc--------
Confidence 34555668888888888876321 1 12345777666 56889999999999998888888873320
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHh
Q 014350 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHK 164 (426)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~ 164 (426)
+ |+ ..++|+|......-|.-+...|..++|++.++..-.
T Consensus 90 ------------E----------------L~-qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 90 ------------E----------------LH-QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -----------------------------TT-STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------c----------------cc-cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0 00 137899999999999999999999999876665433
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=36.18 E-value=1.9e+02 Score=27.97 Aligned_cols=53 Identities=13% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..++++.+++.+++.++.++-+ .+.+.++...|.+.|+...+...|.++.+.+
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYD----EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3456889999999999888743 5678899999999999999999999887754
No 380
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=36.12 E-value=5.9e+02 Score=27.50 Aligned_cols=225 Identities=11% Similarity=0.142 Sum_probs=121.4
Q ss_pred HhHHHHhhcccCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHhhh
Q 014350 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK----------YKEMMDAYREMLTYIKS 86 (426)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~----------~~~l~e~~~~l~~~~~~ 86 (426)
.+.++-.+++=+..|..+=|+.++.+......... ..+++..|+...|..+. |.++.+.+..++.++..
T Consensus 220 kL~eIv~sRGKK~TDr~eqI~~L~~L~~ia~~~~~-~i~Il~~lIsa~FD~~~~~~~~M~~~~W~~~~~~i~~Ll~lL~~ 298 (595)
T PF05470_consen 220 KLKEIVESRGKKGTDRQEQIRQLEKLLEIAKTPYQ-KIEILLHLISARFDYNSSISDYMPIEQWKKCLNNINELLDLLEE 298 (595)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHcCccc-chhHHHhhhHHHHccCCccccCcCHHHHHHHHHHHHHHHHHHHh
Confidence 44567778888888888888888888765443222 57888888877766554 88888888888777622
Q ss_pred hhhhhHH-------------------------HHHHHHHHHHhcC-----------CCC------CChhHHHHHHHHHHH
Q 014350 87 AVTRNYS-------------------------EKCINNIMDFVSG-----------SAS------QNFSLLREFYQTTLK 124 (426)
Q Consensus 87 ~~~k~~~-------------------------~k~v~~il~~~~~-----------~~~------~~~~~~~~~~~~~l~ 124 (426)
. +.-.+ -..|-..++.++. ++. .+...+..++..+..
T Consensus 299 n-~~~~l~~~~~e~~e~~e~e~~~~~~~~~~i~Gsl~s~verLddE~~KsLq~~D~hs~eYv~RL~dE~~l~~l~~~~q~ 377 (595)
T PF05470_consen 299 N-PNIVLSEEVAEEDENLEDEPQANKDGPIRIRGSLVSFVERLDDEFTKSLQNIDPHSSEYVERLKDEQRLYNLIDRVQQ 377 (595)
T ss_pred C-CCEEEecCCCccccccccccccCCCCcEEEechHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcHHHHHHHHHHHHH
Confidence 1 10000 0111112222111 000 011222333333333
Q ss_pred HHHhhhhhhhHHHHhH-HHHHHHHHhccHHH--------------------------HHHHHHHHHhhcccCCCCcchhh
Q 014350 125 ALEEAKNERLWFKTNL-KLCKIWFDMGEYGR--------------------------MSKILKELHKSCQREDGTDDQKK 177 (426)
Q Consensus 125 ~l~~~~~~kl~~r~~~-~La~~~~~~g~~~~--------------------------A~~ll~el~~~~~~~~~~~d~~~ 177 (426)
.++..+..+...|+.+ ++=++|+....... ...++..+-...+.. | ++
T Consensus 378 Y~e~~~~~~~~~r~~lrrlehiYyK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~L~~~iy~~-~-~~--- 452 (595)
T PF05470_consen 378 YYERTGDEEALARVALRRLEHIYYKPDQVIKAEEWNAWKSQSSSKESVPSPPADEESPSELIDRLCKYIYKD-G-DE--- 452 (595)
T ss_pred HHHHcCChHHHHHHHHHHHHHhhCCcHHHHhhhhhhccccccccccccCCCCccCCCHHHHHHHHHHHHHHC-C-cH---
Confidence 3333333333344443 44444444432221 345555555555531 2 12
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC--ChhHHHHH---HHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMGII---RECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 178 ~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~--~p~~~~~i---~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.....-.|+.+=.+.-.++|.+||.++-.+. +...+. ++..|.-+ -.+-|+..+..|...+|..++.+.+.
T Consensus 453 -~~r~rA~Lc~IY~~AL~d~~~~ARDllLmSh-lqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~~ 528 (595)
T PF05470_consen 453 -RLRTRAMLCHIYHHALHDRYYEARDLLLMSH-LQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELCS 528 (595)
T ss_pred -HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhH-HHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 4445556665533334466999999887762 122222 34444323 35778888899999999998888753
No 381
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=35.98 E-value=82 Score=33.25 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++++++|...|++.++.+++ .-++..+++++...|+++++.+.|..-...-
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps-----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMS-----WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 467899999999999988752 3588899999999999999999998876664
No 382
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=35.78 E-value=1.4e+02 Score=28.03 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
.+.+++.|+..-+..-+.|=.++ +-..||+.||+|..-|-.-|..|-.+|.|.- .+..|+.+...
T Consensus 11 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~--~~~~G~~V~~~ 76 (257)
T PRK10225 11 YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEV--RRGAGIYVLDS 76 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE--ecCCEEEEeCC
Confidence 45677777777777777888899 6999999999999999999999999999974 44457665543
No 383
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=35.37 E-value=5.2e+02 Score=26.67 Aligned_cols=131 Identities=14% Similarity=0.205 Sum_probs=66.7
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccC-------C-CCcchhhhhhHHHHHHHHHHH-HHhhcCHHHHHHHH
Q 014350 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE-------D-GTDDQKKGSQLLEVYAIEIQM-YTETKNNKKLKQLY 205 (426)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~-------~-~~~d~~~~~~l~e~~l~e~rl-~~~~~d~~kak~~l 205 (426)
|+++-++=|.-.+..|+|.-|+.-.......|.+- . ..+|. .-+-.++-...-+ |++.++..-|..-.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di---~~vaSfIetklv~CYL~~rkpdlALnh~ 251 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDI---SSVASFIETKLVTCYLRMRKPDLALNHS 251 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhH---HHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 55555555666666666655554444444444321 0 11221 2222333332223 45666655555443
Q ss_pred HHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhh-cchhHHHHHHHHHHHHHhh
Q 014350 206 QKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLKYLVLANMLM 274 (426)
Q Consensus 206 ~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~-~~~~~~~~lky~~L~~lL~ 274 (426)
-++...+++.+.+. ++.+.++-...+|.+|++.+.-+---|.-. ++..+...+-.+..++++.
T Consensus 252 hrsI~lnP~~frnH------LrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqamiE 315 (569)
T PF15015_consen 252 HRSINLNPSYFRNH------LRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMIE 315 (569)
T ss_pred hhhhhcCcchhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHHH
Confidence 33333333333232 233445556678999999888774445433 3556656666677777754
No 384
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.30 E-value=4.2e+02 Score=25.57 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHhcCCcc-------chhhhH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014350 30 TDPEGALAGFAEVVAMEPE-------KAEWGF--------KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~-------~~~~~~--------k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (426)
..+-.|+..+....+.+.. -.+|.. -...-.+.+|...|++++++.....+... .. .+
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--E~-----~A 141 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--EA-----AA 141 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--HH-----HH
Confidence 3567888888888765431 022221 12233367899999999999988774333 11 11
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHH----HhccHHHHHHHHHHHHhhcccCC
Q 014350 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF----DMGEYGRMSKILKELHKSCQRED 170 (426)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~----~~g~~~~A~~ll~el~~~~~~~~ 170 (426)
--|+..+.. .+.++.+..++..+...++-+ ...||.-|. ..+++++|.-+++++-..+...
T Consensus 142 l~VqI~lk~----------~r~d~A~~~lk~mq~ided~t----LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T- 206 (299)
T KOG3081|consen 142 LNVQILLKM----------HRFDLAEKELKKMQQIDEDAT----LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPT- 206 (299)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHccchHHH----HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCC-
Confidence 111111110 122222222222221112211 123444333 3367888999999988766421
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 171 ~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
+....-+.-.++.++||..|..+++.+..
T Consensus 207 -----------~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 207 -----------PLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -----------hHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 12233344567888999999999888753
No 385
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=35.12 E-value=1.1e+02 Score=28.21 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+..++.|+..-+..-+.|=.++ +-..||+.||+|-.-|-.-|..|-.+|.|. +.+..|+.+..
T Consensus 9 ~~v~~~l~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~--~~~~~G~~V~~ 72 (235)
T TIGR02812 9 GFAEEYIVESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLT--IQHGKPTKVNN 72 (235)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE--EeCCCccEecC
Confidence 3456666666666667788899 899999999999999999999999999997 44455765543
No 386
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=34.61 E-value=3.2e+02 Score=28.95 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=116.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~ 220 (426)
.=++...++|+.+.|..++.++-+..+ | ....+.-+...++.++.+++..|...+.+... ....+.-
T Consensus 68 lAa~al~~e~k~~qA~~Ll~ql~~~Lt------d----~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~---~~ls~~Q 134 (604)
T COG3107 68 LAARALVEEGKTAQAQALLNQLPQELT------D----AQRAEKSLLAAELALAQKQPAAALQQLAKLLP---ADLSQNQ 134 (604)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccCC------H----HHHHHHHHHHHHHHHhccChHHHHHHHhhcch---hhcCHHH
Confidence 445678899999999999999987543 2 45778888889999999999999998775421 1122333
Q ss_pred HHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhC-CCCCCCCcccccccCCCc-ccHHH
Q 014350 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME-SEVNPFDGQEAKPYKNDP-EILAM 298 (426)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~-~~~~~~~s~~~~~~~~~~-~~~~l 298 (426)
+.+++...+.+.-..++--+|.+.+........... .+..--.+. .+|+. .....+.+. + ..++ .++-.
T Consensus 135 q~Ry~q~~a~a~ea~~~~~~a~rari~~~~lL~~k~----~q~nid~tW-~ll~~~~~~~VIn~s-a---~e~~~~L~GW 205 (604)
T COG3107 135 QARYYQARADALEARGDSIDAARARIAQDPLLSGKA----KQANIDKTW-QLLSEQANTGVINNS-A---DEGNAALQGW 205 (604)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHhhhhccchh----HHHhHHHHH-HHhhhhccccceecc-c---CCcccccchH
Confidence 456666555555555566677777666532221111 111111111 11221 011111100 0 0011 12222
Q ss_pred HHHHHHHhh--CCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHH
Q 014350 299 TNLIAAYQR--NEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLL 376 (426)
Q Consensus 299 ~~L~~af~~--~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l 376 (426)
..|.+.+.+ .+......-+++........|-- .|... .|. =++.|+-.+.+.||=+|=++-+-. ..
T Consensus 206 L~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA-~~~P~--------~l~-~l~~f~~~~~skiALLLPLtG~~a--~~ 273 (604)
T COG3107 206 LDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAA-KMLPT--------ALT-NLKNFSQASPSKIALLLPLTGQAA--VF 273 (604)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchh-hhChH--------HHH-hhhhcccCCchheeEEeccCChhH--HH
Confidence 245554432 23334444455554444444421 11111 111 123467777788887777765543 57
Q ss_pred HHhHHcCceeEEEe
Q 014350 377 VSLILDNRIDGHID 390 (426)
Q Consensus 377 ~~lI~~g~i~akID 390 (426)
.+.|.+|-..|+-+
T Consensus 274 a~~IqdGF~aA~~~ 287 (604)
T COG3107 274 ARTIQDGFLAAKNA 287 (604)
T ss_pred HHHHHHHHHHhccC
Confidence 78888888877773
No 387
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.52 E-value=1.7e+02 Score=31.37 Aligned_cols=61 Identities=18% Similarity=0.464 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 331 RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 331 ~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
..+|+.+.+.|+++ + .--..|+++.+|..+++|-+.+...|..-....-|.|++|- |++..
T Consensus 114 e~Y~d~iaeEinek----L-qE~gqvtiaeLakq~dl~sellqs~l~ek~lg~iikgr~dg--gviyT 174 (776)
T KOG2235|consen 114 EEYVDRIAEEINEK----L-QEQGQVTIAELAKQWDLPSELLQSLLIEKLLGSIIKGRVDG--GVIYT 174 (776)
T ss_pred HHHHHHHHHHHHHH----H-HHhcchHHHHHHHhcCCcHHHHHHHHHHHhhccceeeeecC--CEEee
Confidence 35666776666543 2 22478999999999999999999998887777778999997 66543
No 388
>PLN02789 farnesyltranstransferase
Probab=34.42 E-value=4.6e+02 Score=25.74 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHhcCCccc-hhhhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHhc
Q 014350 29 ETDPEGALAGFAEVVAMEPEK-AEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINN-IMDFVS 105 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~~l~~l~~~~~-~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~-il~~~~ 105 (426)
....+.|++.+.++|..++++ ..|..| +.++...| +++++++.+..++... +|++.+=--+. ++..+.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R-----~~iL~~L~~~l~eeL~~~~~~i~~n----pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFR-----RLCLEALDADLEEELDFAEDVAEDN----PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHH-----HHHHHHcchhHHHHHHHHHHHHHHC----CcchHHhHHHHHHHHHcC
Confidence 445788999999988888753 455544 33444556 6789999998888775 34433322222 222222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
. +. .+....+++.+++. + ..|--.|. ..+-+....|+|++|.+...++...
T Consensus 121 ~-~~--~~~el~~~~kal~~-d-pkNy~AW~----~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 121 P-DA--ANKELEFTRKILSL-D-AKNYHAWS----HRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred c-hh--hHHHHHHHHHHHHh-C-cccHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1 00 11223333332221 1 11222332 3344555568899999999988776
No 389
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=34.12 E-value=1.3e+02 Score=25.41 Aligned_cols=52 Identities=21% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..+...-..++++.||+.++++...|-..|.+|...|.|.-. ..+.+..++.
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~ 65 (142)
T PRK03902 14 YLLIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPK 65 (142)
T ss_pred HHHHhcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEe---cCceEEECHH
Confidence 334444556788999999999999999999999999988632 2355666665
No 390
>PRK10870 transcriptional repressor MprA; Provisional
Probab=33.97 E-value=3.2e+02 Score=24.11 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=37.7
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
..++..+||+.++++...+-..|-+|...|.|.=.-|..++-
T Consensus 70 ~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR 111 (176)
T PRK10870 70 HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRR 111 (176)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 468889999999999999999999999999998887777753
No 391
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.90 E-value=2.3e+02 Score=26.21 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=45.3
Q ss_pred ccCCCCHHHHHHHHHHHhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 014350 26 GLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (426)
Q Consensus 26 ~~~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (426)
-++.+++++|...|...++.=++ ..+...-.+.+-+-...+.+.|+.+++-.++.+.+. +.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pt 166 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PT 166 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-ch
Confidence 37788899999999999987663 233345555666777788888888888888777776 53
No 392
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.74 E-value=3.8e+02 Score=24.61 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhh-hHHHHhHHHHHHHHHhccHHH-------HHHHHHHHHhhcccCCCCcchhhhhhHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGR-------MSKILKELHKSCQREDGTDDQKKGSQLL 182 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~k-l~~r~~~~La~~~~~~g~~~~-------A~~ll~el~~~~~~~~~~~d~~~~~~l~ 182 (426)
+.+...+.|..++-+.+....+. ....+.+++|=+|.+.|+-++ |.+.+.+....-..+...++ -.
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~------~~ 165 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD------EA 165 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch------HH
Confidence 35667778888877755543232 344778899999999999544 55555555444332211122 12
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 183 EVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 183 e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
-+......++.+.|++.+|...+.+.-.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 2344445688888999988888776643
No 393
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=33.71 E-value=14 Score=39.22 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.+.-++.+.+.|++..|..++.++....-. + ....+..+...++....+++..|...+... ......+
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~-----~----~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~---~~~~l~~ 94 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLS-----P----SQQARYQLLRARLALAQGDPEQALSLLNAQ---DLWQLPP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCC-----h----HHHHHHHHHHHHHHHhcCCHHHHHHHhccC---CcccCCH
Confidence 456778899999999999999999854211 1 445677888889999999999999987642 1111234
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
..+..++...+.++...+++.+|.+.+...
T Consensus 95 ~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445566677777787888898888877765
No 394
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.33 E-value=40 Score=26.52 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.7
Q ss_pred ccccchhHHhHhCCChHHHHHHHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLV 377 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~ 377 (426)
+.++++.+|.-||++++++|+.|.
T Consensus 22 ~~ls~~~ia~dL~~s~~~le~vL~ 45 (89)
T PF10078_consen 22 SGLSLEQIAADLGTSPEHLEQVLN 45 (89)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 689999999999999999998764
No 395
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=33.23 E-value=43 Score=30.77 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=24.3
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+++++.+||+.||++...+...|.+...
T Consensus 177 R~~~l~dLA~~lGISkst~~ehLRrAe~ 204 (215)
T COG3413 177 RRVSLKDLAKELGISKSTLSEHLRRAER 204 (215)
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6999999999999999888888877643
No 396
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.15 E-value=2.6e+02 Score=24.57 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
..+.-++.-..+.+..++...+..++...+-..+. ...+..+.|.+|+..++|.+|.+.|.+.-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35555566566778888888888888876654332 23477889999999999999999999973
No 397
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=32.96 E-value=2.1e+02 Score=24.07 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=44.7
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee-EEEe-cCCCEEEEecCch
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID-GHID-QVNRLLERGDRSA 403 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~-akID-~~~g~v~~~~~~~ 403 (426)
..++++-.-.+.+.||+.++.+...|.+-|-+++..|.+. -+.. ...|...++.+.+
T Consensus 34 ~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~ 92 (126)
T COG3355 34 KALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPID 92 (126)
T ss_pred HHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCC
Confidence 3444456778999999999999999999999999999984 3444 5666777776543
No 398
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=32.80 E-value=1.1e+02 Score=30.53 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHH
Q 014350 295 ILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQ 374 (426)
Q Consensus 295 ~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~ 374 (426)
-..+++..+.|++. |+++...+..----||.+...+..=......-.+..+.+-|..+.+ +-.+-+..+++++|.
T Consensus 292 ~~~~ke~f~~Fn~~----fee~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~-~~~Kyikyt~~~le~ 366 (371)
T PF03081_consen 292 RELLKEKFKKFNSA----FEEIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF-NPEKYIKYTPEDLEN 366 (371)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS-SHCCC-SS-HHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCCccCHHHHHH
Confidence 34566766666543 6665555433333688887655544444455566777777888888 667778999999999
Q ss_pred HHHHh
Q 014350 375 LLVSL 379 (426)
Q Consensus 375 ~l~~l 379 (426)
.|.+|
T Consensus 367 ~l~~L 371 (371)
T PF03081_consen 367 MLNEL 371 (371)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 98764
No 399
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=32.66 E-value=62 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.3
Q ss_pred cccccccchhHHhHhCCChHHH
Q 014350 351 KPYTRIRIPFISKELNVPEKDV 372 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~ev 372 (426)
+.|..+++.+||+..|++...+
T Consensus 12 ~G~~~~s~~~Ia~~~gvs~~~~ 33 (47)
T PF00440_consen 12 KGYEAVSIRDIARRAGVSKGSF 33 (47)
T ss_dssp HHTTTSSHHHHHHHHTSCHHHH
T ss_pred hCHHhCCHHHHHHHHccchhhH
Confidence 4699999999999999997654
No 400
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=32.49 E-value=93 Score=26.34 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=38.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
..++..+||+.++++..-+=..|-+|...|.|.=..|..++-
T Consensus 53 ~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR 94 (144)
T PRK11512 53 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 94 (144)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCC
Confidence 469999999999999999999999999999998887777763
No 401
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.27 E-value=1e+02 Score=19.98 Aligned_cols=30 Identities=7% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++..+|.+....++|+++.+-|+..+.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 357789999999999999999999998886
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.17 E-value=60 Score=22.80 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHH
Q 014350 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVK 62 (426)
Q Consensus 19 ~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~ 62 (426)
-.||-|=+. +-+|++.|.+....+++.+|++.+ .+.|+.+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q--a~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ--AQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH--HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH--HHHHHHHHH
Confidence 345555543 456899999999999999987643 566666553
No 403
>PRK04239 hypothetical protein; Provisional
Probab=32.07 E-value=31 Score=28.25 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 340 NVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 340 ~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
..+...|.+++.|=.+=.|++|+-.=-=-...||..|.+|...|.|.++||-
T Consensus 37 ~qk~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e 88 (110)
T PRK04239 37 AQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDD 88 (110)
T ss_pred HHHHHHHHHHCCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 3445567888887655555544321000135899999999999999999874
No 404
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=31.63 E-value=44 Score=23.22 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=19.4
Q ss_pred cccchhHHhHhCCChHHHHHHHHH
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
.+++.++|+.+|++..++=..+.+
T Consensus 3 ~i~V~elAk~l~v~~~~ii~~l~~ 26 (54)
T PF04760_consen 3 KIRVSELAKELGVPSKEIIKKLFK 26 (54)
T ss_dssp EE-TTHHHHHHSSSHHHHHHHH-H
T ss_pred ceEHHHHHHHHCcCHHHHHHHHHH
Confidence 578999999999999998887743
No 405
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=31.34 E-value=4.6e+02 Score=24.88 Aligned_cols=108 Identities=9% Similarity=0.097 Sum_probs=63.0
Q ss_pred HHhHHHHHHHHHhc-cHHHHHHHHHHHHhhcccCCC----CcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 137 KTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDG----TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 137 r~~~~La~~~~~~g-~~~~A~~ll~el~~~~~~~~~----~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
++.++.|.-..+.+ ++++|...|++....+..+.. +.+. ....+.++...++.++..++..-.....+..+-.
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~--~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l 113 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG--SELRLSILRLLANAYLEWDTYESVEKALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH--HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 66788888888999 999999999999988644111 1121 2445667777777788877754333333333333
Q ss_pred hccCCC-hhHH-HHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 212 KSAIPH-PRIM-GIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 212 ~~~~~~-p~~~-~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+..++ |.+. -.++.+.+ ..++..+.+.+.....+
T Consensus 114 ~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHh
Confidence 444454 4443 23444433 34455555555555443
No 406
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=31.26 E-value=2e+02 Score=23.36 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=40.7
Q ss_pred ccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 350 IKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 350 ~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
+.-|+-||...+|+++++...-+...|-.|...|.|.-..-+....|..
T Consensus 54 V~~~K~ITp~~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~k~~~~~IYt 102 (105)
T PF03297_consen 54 VPKMKLITPSVLSERLKINGSLARKALRELESKGLIKPVSKHHRQRIYT 102 (105)
T ss_dssp CTTSSCECHHHHHHHHCCSCHHHHHHHHHHHHCCSSEEEECCTTCEEEE
T ss_pred hccCcEeeHHHHHHhHhhHHHHHHHHHHHHHHCCCEEEEeccCCeEEEe
Confidence 3458999999999999999999999999999999998765554444443
No 407
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=31.18 E-value=4.5e+02 Score=24.73 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=59.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHhH-HHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHH
Q 014350 300 NLIAAYQRNEIIEFEKILKSNR-KTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 300 ~L~~af~~~dl~~f~~~l~~~~-~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
.|+.......+.+|-..|+... ..+..+|++ +|.=.|-+.+.|..+-+++..=+++..+.-.-..++=.+.+.+.|+.
T Consensus 106 nLL~LLsqNRiaeFHteLe~lp~~~l~~~~~I-~~~v~LEq~~MEGaYnKv~~a~~s~p~~~y~~FmdIl~~tiRdEIA~ 184 (260)
T KOG3151|consen 106 NLLYLLSQNRIAEFHTELELLPKKILQHNPYI-SHPVSLEQSLMEGAYNKVLSAKQSIPSEEYTYFMDILLDTIRDEIAG 184 (260)
T ss_pred HHHHHHHhccHHHHHHHHHhccHHHhhccchh-hhHHHHHHHHHhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4556666788888887777654 344555665 46778889999999999888777888777777777767777777777
Q ss_pred hHHc
Q 014350 379 LILD 382 (426)
Q Consensus 379 lI~~ 382 (426)
+|..
T Consensus 185 c~EK 188 (260)
T KOG3151|consen 185 CIEK 188 (260)
T ss_pred HHHH
Confidence 7654
No 408
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=30.97 E-value=5.2e+02 Score=28.43 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
.+|+..|...|+-.+|-..++|..+-.+.+ +.+...-|-+....|+++.|..++.+-..
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~------------w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQH------------WQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCC------------CeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 477888888888888888888888876432 22333334466677888888887776533
No 409
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=30.40 E-value=1.3e+02 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.5
Q ss_pred ccchhHHhHhCCChHHHHHHHHH
Q 014350 356 IRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
.++..+|+.+|++.+.|...+-+
T Consensus 28 ~s~~~vA~~~~vs~~TV~ri~~~ 50 (52)
T PF13542_consen 28 RSFKDVARELGVSWSTVRRIFDR 50 (52)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHh
Confidence 79999999999999999887654
No 410
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=30.18 E-value=71 Score=28.74 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=33.1
Q ss_pred ccchhHHhHhCCC-hHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 356 IRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 356 I~l~~iA~~l~l~-~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
.+..+||+.+|++ ..-+-..|.+|...|-|...-.+..|
T Consensus 26 ~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~~~~~~ 65 (199)
T TIGR00498 26 PSIREIARAVGLRSPSAAEEHLKALERKGYIERDPGKPRA 65 (199)
T ss_pred CcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCCCCCCe
Confidence 7899999999998 99999999999999998765444433
No 411
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=6.2e+02 Score=28.13 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
-||.+|+..|+|.+|..++..++..
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccCh
Confidence 4999999999999999998888765
No 412
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=30.13 E-value=80 Score=24.13 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=23.7
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
++.+.-=.-|+...||..+|.++++|...|..+=
T Consensus 30 Lr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p 63 (77)
T PF12324_consen 30 LRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMP 63 (77)
T ss_dssp HHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-T
T ss_pred HHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCC
Confidence 4444445789999999999999999999998873
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.79 E-value=2.1e+02 Score=20.53 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=25.2
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
|--+.-.+....-+.+.|++++|.+++.++.....
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33333345666779999999999999999987753
No 414
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=29.69 E-value=2.1e+02 Score=20.37 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHHHHHhccccccccchhHHhHhCCChHHH-HHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDV-EQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 341 l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~ev-E~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+++..+..+-. -.-|+++.+.+.+|.+..+. ...+.+++.+|.+ ...++.+.++++
T Consensus 7 ~~e~i~~~LR~-~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll----~~~~~~l~lT~~ 63 (66)
T PF06969_consen 7 LREYIMLGLRC-NEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLL----EIDGGRLRLTEK 63 (66)
T ss_dssp HHHHHHHHHHH-HSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSE----EE-SSEEEE-TT
T ss_pred HHHHHHHHHHh-HCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCE----EEeCCEEEECcc
Confidence 33333443333 57899999999999985544 8889999999877 334556665543
No 415
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=29.69 E-value=1.2e+02 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.7
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+.-.+...||+.+|+|...+...+.++..
T Consensus 16 ~~g~s~~eia~~l~is~~tv~~~~~~~~~ 44 (58)
T smart00421 16 AEGLTNKEIAERLGISEKTVKTHLSNIMR 44 (58)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999887643
No 416
>PF13518 HTH_28: Helix-turn-helix domain
Probab=29.36 E-value=1e+02 Score=20.66 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=28.6
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
..+...+|..+|++...+..++.+.=..| +.|-.+
T Consensus 12 g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l~~ 46 (52)
T PF13518_consen 12 GESVREIAREFGISRSTVYRWIKRYREGG-IEGLKP 46 (52)
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHhcc
Confidence 44999999999999999999998887766 445444
No 417
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=29.32 E-value=77 Score=29.21 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
.+.+++.|++.-+..-+.|=++++-..||+.||+|.--|-.-|.+|-.+|.|.-. ...|.++.
T Consensus 18 ~~~vy~~Lr~~Il~g~l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~--p~rG~~V~ 80 (230)
T COG1802 18 ADQVYEELREAILSGELAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIE--PNRGAFVA 80 (230)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEec--CCCCCeeC
Confidence 4566777777777777789999999999999999999999999999999998766 44454443
No 418
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=28.99 E-value=2.2e+02 Score=22.81 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=36.7
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
..++..+||+.++++...+-..|.+|...|-|.=.-|..|+
T Consensus 42 ~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~ 82 (109)
T TIGR01889 42 GKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDE 82 (109)
T ss_pred CcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccC
Confidence 57999999999999999999999999999999866666655
No 419
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=28.96 E-value=2.4e+02 Score=27.54 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=39.9
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~ 207 (426)
++.-+-++.|.++|.+.+|..+.+.++..-.- ++ +..-.-|+++...||-..|..-+++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL----~e--------~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPL----SE--------QDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChh----hh--------HHHHHHHHHHHHhccchhhhhHHHH
Confidence 44457788899999999999999999887321 11 2333445777788885555544443
No 420
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=28.85 E-value=1.7e+02 Score=27.05 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 336 ~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
.+++.|++.-+..-..|=.++ +-..||+.||+|-.-|-.-|..|..+|.|.- -+..|+++.
T Consensus 11 ~~~~~l~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T PRK04984 11 FAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_pred HHHHHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEeC
Confidence 445555555455555677889 7899999999999999999999999999974 455676664
No 421
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=28.55 E-value=8.3e+02 Score=26.95 Aligned_cols=122 Identities=7% Similarity=0.083 Sum_probs=58.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC-------ChhHHHHHHHHHHHHHHhhhhh
Q 014350 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ-------NFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
+..++-+.+.|+....+|..+- ...+++.+.++.++ +-|+. +.-.-..+|+.+.+.-+.
T Consensus 417 Al~I~Erlemw~~vi~CY~~lg-------~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~---- 482 (777)
T KOG1128|consen 417 ALVIFERLEMWDPVILCYLLLG-------QHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNY---- 482 (777)
T ss_pred HHHHHHhHHHHHHHHHHHHHhc-------ccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhh----
Confidence 3455666666666666665542 34556666666665 21220 000112233333332111
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
+-.|..+.+|...+..++|+++.+.++.....- ....+.+..-.-.++..+++..+-..+..+
T Consensus 483 -~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n------------plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 483 -ISARAQRSLALLILSNKDFSEADKHLERSLEIN------------PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred -hhHHHHHhhccccccchhHHHHHHHHHHHhhcC------------ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 111334455566666788888877777665542 112233333233445555666555555554
No 422
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=28.54 E-value=2.4e+02 Score=31.33 Aligned_cols=57 Identities=14% Similarity=0.301 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEE
Q 014350 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (426)
Q Consensus 333 ~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~ 397 (426)
+++.+.+.| -..++--..|++.++|+.+++|.+.+-..|..- ..+.|+|++| .|.+.
T Consensus 117 Yld~iaeEI-----ne~LqE~G~isI~eLa~~~~Lpsefl~~~l~~r-lG~iI~g~~~--g~~ly 173 (803)
T PLN03083 117 YWDSIAEEI-----NERLQECSQIALAELARQLQVGSELVTSMLEPR-LGTIVKARLE--GGQLY 173 (803)
T ss_pred HHHHHHHHH-----HHHHHHcCcChHHHHHHhcCChHHHHHHHHHHH-hccceEEEec--CCEEe
Confidence 445555444 333445689999999999999999999999887 5578899994 45553
No 423
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.34 E-value=55 Score=25.56 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.9
Q ss_pred cccccchhHHhHhCCChHHHHHHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLL 376 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l 376 (426)
-+++|.+.||+.|++++..+|+.+
T Consensus 21 l~~LS~~~iA~~Ln~t~~~lekil 44 (97)
T COG4367 21 LCPLSDEEIATALNWTEVKLEKIL 44 (97)
T ss_pred hccccHHHHHHHhCCCHHHHHHHH
Confidence 478999999999999999999877
No 424
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=28.31 E-value=42 Score=31.05 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=34.5
Q ss_pred hccccccccchhHHhHhCCC------hHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 349 LIKPYTRIRIPFISKELNVP------EKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~------~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
|...|.|++.+.++++||+- ..+=|.++..||..| ++|+|=.++-+
T Consensus 116 IlS~YQr~RVEnVC~RL~L~~Ls~LW~rdQ~~LL~eMi~~g-~~AiiiKVAAi 167 (277)
T KOG2316|consen 116 ILSDYQRTRVENVCSRLGLVSLSYLWQRDQEELLQEMILSG-LDAIIIKVAAI 167 (277)
T ss_pred hHhHHHHHHHHHHHhhhCceeehHHHhccHHHHHHHHHHcC-CCeEEEEEeec
Confidence 44567888888888888873 345578999999999 78887766654
No 425
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=28.14 E-value=1.6e+02 Score=27.39 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+.+++.|++.-+..-++|=.++ +-..||+.||+|..-|-.-|..|-..|.|.-+ +..|+.+..
T Consensus 13 ~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 76 (254)
T PRK09464 13 DVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRR--QGGGTFVQS 76 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCceeEEec
Confidence 3456666655555566777888 89999999999999999999999999999854 456765544
No 426
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=27.95 E-value=1.2e+02 Score=27.77 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEE
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~ 397 (426)
+.+++.|++.-+..-++|=.+++-..||+.||+|..-|-.-|..|...|.|.-+ +..|+++
T Consensus 14 e~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~--~~~g~~v 74 (221)
T PRK11414 14 LQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVA--PAQAFTV 74 (221)
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEec--CCCceee
Confidence 557777777777777788888899999999999999999999999999999753 3345543
No 427
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.75 E-value=48 Score=27.53 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 340 NVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 340 ~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
..+...|-+++.+=.+=+|++||-.=-=-..-||.+|.+|+.-|.|.+||+.
T Consensus 40 e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kise 91 (129)
T KOG3431|consen 40 EMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKISE 91 (129)
T ss_pred HHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCccccccH
Confidence 3344445566655555455555421111245789999999999999998863
No 428
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=27.71 E-value=1.3e+02 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.5
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+.-.+...||+.+|+|+..++..+.++..
T Consensus 13 ~~~~s~~eia~~l~~s~~tv~~~~~~~~~ 41 (57)
T cd06170 13 AEGKTNKEIADILGISEKTVKTHLRNIMR 41 (57)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999877643
No 429
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=27.70 E-value=8.4e+02 Score=26.70 Aligned_cols=97 Identities=9% Similarity=0.076 Sum_probs=61.2
Q ss_pred HHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHH
Q 014350 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (426)
Q Consensus 145 ~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i 224 (426)
.-+..|+..+-...+++.-+..... .. -...-.+...-.++|-..|++.-|+.+.++|.+++-. .-.-.+.+
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~-ka-----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~--~v~dLa~v 427 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPK-KA-----VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK--TVEDLAEV 427 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcc-cC-----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc--chHHHHHH
Confidence 3444566666555555554433210 00 0112233344468999999999999999998665311 11224667
Q ss_pred HHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 225 RECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
++.-|.+.+...+++.|.+....+.
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 8777788889999999999888774
No 430
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=27.42 E-value=1.4e+02 Score=24.49 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=42.1
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC---chhhHHHHHhcCceeehhh
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR---SAYLTFLLLKKNAYLTCSY 420 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~---~~~~~~~~~~~~~~~~~~~ 420 (426)
.-|.+||+.|+-+++.+-+++..=.. ..|+||-. |.++++.+ +..+..|.+==..||.|+.
T Consensus 22 ~Nf~~I~~~L~R~p~hv~kyl~~ELg---t~g~id~~-~rlii~G~~~~~~i~~~l~~yI~~yVlC~~ 85 (110)
T smart00653 22 VNFADIAKALNRPPDHVLKFLLAELG---TQGSIDGK-GRLIVNGRFTPKKLQDLLRRYIKEYVLCPE 85 (110)
T ss_pred EcHHHHHHHHCCCHHHHHHHHHHHhC---CceeECCC-CeEEEEEeeCHHHHHHHHHHHHHhcEECCC
Confidence 35889999999999988877766322 25788765 66666543 4445566555667888863
No 431
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=27.02 E-value=1.2e+02 Score=26.85 Aligned_cols=45 Identities=9% Similarity=-0.000 Sum_probs=37.0
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.++-.+||..+|++.+.+-+.+.+|-.+|.|. ...|.+.+.+...
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~----~~~~~i~I~d~~~ 193 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIR----SGYGKIQLLDLKG 193 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE----cCCCEEEEECHHH
Confidence 57889999999999999999999999998875 3456677766544
No 432
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=8.9e+02 Score=27.23 Aligned_cols=45 Identities=7% Similarity=0.231 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHH-HHhHHHHHHHHHhccHHHHHHH
Q 014350 114 LLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKI 158 (426)
Q Consensus 114 ~~~~~~~~~l~~l~~~~~~kl~~-r~~~~La~~~~~~g~~~~A~~l 158 (426)
+...+|+.+....+.-..+--++ .+..+.|...+..|++++|..-
T Consensus 345 ~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~q 390 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQ 390 (933)
T ss_pred HHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34567777777655443333444 6678999999999999998643
No 433
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=26.47 E-value=7.4e+02 Score=25.69 Aligned_cols=104 Identities=9% Similarity=-0.071 Sum_probs=62.4
Q ss_pred hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 129 ~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
-.++-+| ..--|+++.-.|+.++|.+.+++.-.. . .+. +....=++.+.+-.+....||.+|.......
T Consensus 263 yP~s~lf---l~~~gR~~~~~g~~~~Ai~~~~~a~~~-q-----~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 263 YPNSALF---LFFEGRLERLKGNLEEAIESFERAIES-Q-----SEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred CCCcHHH---HHHHHHHHHHhcCHHHHHHHHHHhccc-h-----hhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 3466666 456678888899999999999975421 1 111 2222222333334467889999998887766
Q ss_pred HhhhccCCChhHHHHHHHhhHHHhHHhhcH-------HHHHHHHHHH
Q 014350 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQW-------ADAATDFFEA 248 (426)
Q Consensus 209 ~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y-------~~A~~~f~ea 248 (426)
.+.++ . -++.+....|..+...++- ++|...|.++
T Consensus 332 ~~~s~----W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 332 LKESK----W-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred Hhccc----c-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 44321 1 1444555555555555555 6666666666
No 434
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=26.43 E-value=88 Score=23.24 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHhcccc-ccccchhHHhHhCCChHHHHHHHHH
Q 014350 346 LLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 346 l~~i~~pY-s~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
...+..-+ +.-+...||+.+|++++++...+..
T Consensus 10 ~~~L~~~lgr~Pt~eEiA~~lgis~~~v~~~l~~ 43 (78)
T PF04539_consen 10 RRELEQELGREPTDEEIAEELGISVEEVRELLQA 43 (78)
T ss_dssp HHHHHHHHSS--BHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHcccHHHHHHHHHh
Confidence 34444333 5678999999999999999988764
No 435
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=26.24 E-value=3e+02 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 59 QTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
++.+.|...|.|++++++.....++.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~ 136 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQ 136 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHH
Confidence 45788999999999999888776664
No 436
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=26.12 E-value=1.2e+02 Score=26.50 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=38.4
Q ss_pred HhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 348 ~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.+.+.--.++..+||+.|++++..|-.++-+|-..|.+.=. +.|-+..++.
T Consensus 17 ~l~~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~---~y~gi~LT~~ 67 (154)
T COG1321 17 ELLEEKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYE---PYGGVTLTEK 67 (154)
T ss_pred HHHhccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEe---cCCCeEEChh
Confidence 34444567899999999999999999999999999876421 4455566654
No 437
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=26.10 E-value=4.5e+02 Score=26.34 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH
Q 014350 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (426)
Q Consensus 57 l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~ 136 (426)
++.-|.-|+++|.|+++.++|......- +..+--. .+..+.++.. . .+. ..--+|-....=++.|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~----~NRA~AYlk~-K----~FA----~AE~DC~~AiaLd~~Y~ 165 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYH----INRALAYLKQ-K----SFA----QAEEDCEAAIALDKLYV 165 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC-CCCccch----hhHHHHHHHH-H----HHH----HHHHhHHHHHHhhHHHH
Confidence 4555778999999999999998876554 3221111 1222233321 0 011 00011111123456787
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
+.+.|-+...++.|+..+|.+-.+.+...
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 77878888888888888887777666665
No 438
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=25.94 E-value=1.4e+02 Score=26.58 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=33.9
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
+++-..||+.+|++.+.+-+.+.+|-.+|.|. ++ .+.|.+.+
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~--~~--~~~i~i~~ 209 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLIS--AH--GKTIVVYG 209 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--ec--CCEEEEec
Confidence 67779999999999999999999999999774 22 34455544
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.93 E-value=1.6e+02 Score=21.25 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 59 QTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+++.-+.+.|+++++.+++..+..-.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45677889999999999999998776
No 440
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=5.2e+02 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHhcCCCC
Q 014350 90 RNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 90 k~~~~k~v~~il~~~~~~~~ 109 (426)
.++++|+|..++..+...|-
T Consensus 96 ~~~lek~v~~llg~L~~~pl 115 (321)
T KOG3951|consen 96 VAKIEKIVPIILGSLSSGPL 115 (321)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 45678888888888876553
No 441
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=25.24 E-value=73 Score=21.36 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=18.9
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcC
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDN 383 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g 383 (426)
-.+...||+.+|+|...|-.++-+.-..|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 78899999999999999999988766555
No 442
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.07 E-value=2.9e+02 Score=24.09 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 181 l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+.-++.-....+...+...+..+++..+-..+.. ..++.+-|.+|+..++|.+|.+.|.+.-+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~------~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNL------KELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------cccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 44555555566677888888888888765443322 34677889999999999999999998743
No 443
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=25.06 E-value=1.9e+02 Score=26.13 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcC--ce-eEEEecCCCEEEEecCchhhHHHH
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDN--RI-DGHIDQVNRLLERGDRSAYLTFLL 409 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g--~i-~akID~~~g~v~~~~~~~~~~~~~ 409 (426)
|++.+||+.++++.++++..|-.+..+= .= .-.|=..+|...+..++++...+.
T Consensus 21 ls~~~La~~l~~~~~~v~~~l~~L~~~y~~~~~gi~i~~~~~~y~l~tk~e~~~~v~ 77 (188)
T PRK00135 21 LSLEQLAEILELEPTEVQQLLEELQEKYEGDDRGLKLIEFNDVYKLVTKEENADYLQ 77 (188)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHH
Confidence 9999999999999999999999987751 11 236666777778888877766654
No 444
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=24.98 E-value=2.1e+02 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+.+++.|+..-+..-+.|=.++ +-..||+.||+|..-|-.-|..|-..|.|.-+ +..|+.+..
T Consensus 5 ~~v~~~L~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~Le~~GlV~~~--~~~G~~V~~ 68 (253)
T PRK10421 5 DEVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSR--RGGGTFIRW 68 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--CCCeEEEec
Confidence 3455666655555556787899 68999999999999999999999999999854 456766543
No 445
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=24.58 E-value=1.3e+02 Score=26.43 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcC---ceeEEEecCCCEEEEecCchhhHHHHH
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDN---RIDGHIDQVNRLLERGDRSAYLTFLLL 410 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g---~i~akID~~~g~v~~~~~~~~~~~~~~ 410 (426)
.|+++.||+.++ ++++++..|-++...= .=.-.|-+.+|...+..++++...+.+
T Consensus 13 pvs~~~La~~l~-~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~ 70 (159)
T PF04079_consen 13 PVSIEELAEILG-SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYVEK 70 (159)
T ss_dssp -B-HHHHHHHCT--HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHHHH
T ss_pred CCCHHHHHHHhC-CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHHHH
Confidence 399999999999 9999998888877642 123477788888889888888776654
No 446
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=24.44 E-value=92 Score=26.63 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHhcccc--ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 347 LKLIKPY--TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 347 ~~i~~pY--s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
..++.-+ ..-++..|++.+|+|++.+ .++|.+|+|.-.-+
T Consensus 36 ~~yLr~~p~~~ati~eV~e~tgVs~~~I----~~~IreGRL~~~~~ 77 (137)
T TIGR03826 36 YKFLRKHENRQATVSEIVEETGVSEKLI----LKFIREGRLQLKHF 77 (137)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCcCHHHH----HHHHHcCCeeccCC
Confidence 3444444 4489999999999997655 56778898865443
No 447
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=24.34 E-value=4.7e+02 Score=22.69 Aligned_cols=111 Identities=9% Similarity=0.076 Sum_probs=64.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCC------------------------C----cchhhhhhHHHHHHHHHHH
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDG------------------------T----DDQKKGSQLLEVYAIEIQM 191 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~------------------------~----~d~~~~~~l~e~~l~e~rl 191 (426)
...|+..+..|+.++|.+.|.+.+........ + ++ --.....+-.....+-
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~-~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD-YVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec-cCChHHHHHHHHHHHH
Confidence 47788889999999999999888876542100 0 00 0012233445556666
Q ss_pred HHhhcCHHHHHHHHHHHHhhhcc-CC-ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 192 YTETKNNKKLKQLYQKALAIKSA-IP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 192 ~~~~~d~~kak~~l~~a~~i~~~-~~-~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+..|+...|+..++.+..-... .. -|.-+-.-....+.-++.+++|.+|..-+-.+.++
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 78889999999987765221111 11 14333222344556667889999999888888654
No 448
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=24.12 E-value=4.7e+02 Score=22.54 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=73.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHH
Q 014350 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (426)
Q Consensus 142 La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~ 221 (426)
-|-..-+.|+.+.|++...+..-.+..-. ..|-...+.+.-.|+..+|..-++++......-+...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~ra------------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta-- 114 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERA------------SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA-- 114 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccch------------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH--
Confidence 34456678999999999999888875321 1233334555667888888888887766554332112
Q ss_pred HHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHH-HHH---HHHHHHHHh
Q 014350 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRI-QCL---KYLVLANML 273 (426)
Q Consensus 222 ~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~-~~l---ky~~L~~lL 273 (426)
-.-+..-|.+|-..++-..|...|-.+- ..|++.+. +.. -|..+|.=|
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA----~LGS~FAr~QLV~lNPYAAlCN~M 166 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAA----QLGSKFAREQLVELNPYAALCNQM 166 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHH----HhCCHHHHHHHHhcChHHHHHHHH
Confidence 2345667888888889899998887763 35666332 221 377777543
No 449
>PRK11906 transcriptional regulator; Provisional
Probab=23.96 E-value=5e+02 Score=26.96 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
+++.|+..|...+..+|+. .-+....+-+++-.|+.+++.+++..-+.+- +....+-+++-+++.+-.+|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~----A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs----P~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI----ASLYYYRALVHFHNEKIEEARICIDKSLQLE----PRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred chhhHHHHHHHHhhcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----chhhHHHHHHHHHHHHcCCc
Confidence 3667777777777776643 3445556777888899999999888876664 34445556667776665544
No 450
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.80 E-value=1.2e+02 Score=20.02 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=21.8
Q ss_pred cchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 357 ~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
++..+|+.+|+++..+..+ +..|.+.+
T Consensus 2 ~~~e~a~~~gv~~~tlr~~----~~~g~l~~ 28 (49)
T cd04761 2 TIGELAKLTGVSPSTLRYY----ERIGLLSP 28 (49)
T ss_pred cHHHHHHHHCcCHHHHHHH----HHCCCCCC
Confidence 6788999999999988877 55677764
No 451
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.70 E-value=2.9e+02 Score=25.00 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCc--c-chhhhHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 32 PEGALAGFAEVVAMEP--E-KAEWGFKAL-KQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~--~-~~~~~~k~l-~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.+.|+-.+..|-+..+ + .-+..-+.+ .+.+-+|.+.|.++++.+.++.+..-
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 4688888888844332 1 122233333 34678999999999999999888664
No 452
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=23.44 E-value=52 Score=26.85 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHcCceeEEEec
Q 014350 370 KDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~akID~ 391 (426)
..||..|.+|...|.|.++||-
T Consensus 62 ~~VE~~Liqlaq~G~l~~kI~d 83 (107)
T PF01984_consen 62 RQVENQLIQLAQSGQLRGKIDD 83 (107)
T ss_dssp HHHHHHHHHHHHCTSSSS-B-H
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 4899999999999999999874
No 453
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=23.34 E-value=2.6e+02 Score=21.82 Aligned_cols=37 Identities=5% Similarity=-0.093 Sum_probs=34.6
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
.|+-||..-+|+++++...-+...|..|-..|.|.-.
T Consensus 38 ~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 38 KEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred cCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEE
Confidence 4999999999999999999999999999999999765
No 454
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=23.04 E-value=66 Score=36.15 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=38.3
Q ss_pred hHHhHhCCCh------HHHHHHHHHhHHcCceeE-EEecCCCEEEEecCchhhHHHHHh
Q 014350 360 FISKELNVPE------KDVEQLLVSLILDNRIDG-HIDQVNRLLERGDRSAYLTFLLLK 411 (426)
Q Consensus 360 ~iA~~l~l~~------~evE~~l~~lI~~g~i~a-kID~~~g~v~~~~~~~~~~~~~~~ 411 (426)
+|..+.|+-+ +++-.++.+++.+|.|+| +||+++|. .+|..|.+-|-..
T Consensus 263 dIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL---~DP~~Yl~rLr~~ 318 (879)
T PRK14511 263 DVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGL---ADPRGYLRRLRRR 318 (879)
T ss_pred cchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccc---cCHHHHHHHHHhc
Confidence 4555556542 466789999999999998 99999997 7888888877443
No 455
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.64 E-value=2.4e+02 Score=22.00 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMD 75 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e 75 (426)
..+++++|++.+..++..+++..+ ..+=+.++.++.-.|.-+-+..
T Consensus 34 ~~g~~e~Al~~Ll~~v~~dr~~~~--~~ar~~ll~~f~~lg~~~plv~ 79 (90)
T PF14561_consen 34 AAGDYEEALDQLLELVRRDRDYED--DAARKRLLDIFELLGPGDPLVS 79 (90)
T ss_dssp HTT-HHHHHHHHHHHHCC-TTCCC--CHHHHHHHHHHHHH-TT-HHHH
T ss_pred HCCCHHHHHHHHHHHHHhCccccc--cHHHHHHHHHHHHcCCCChHHH
Confidence 356899999999999998863211 2344556666666666544433
No 456
>PHA00738 putative HTH transcription regulator
Probab=22.58 E-value=3.9e+02 Score=21.84 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=44.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFL 408 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~ 408 (426)
-...+...|++.++++..-|-+.|.-|-..|.|..+-+-..-+..+.+.....+.+
T Consensus 24 ~e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~~~~l~ 79 (108)
T PHA00738 24 NYILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSKEIQIL 79 (108)
T ss_pred cCCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCccHHHHH
Confidence 33578889999999999999999999999999988776666666666654444444
No 457
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=22.44 E-value=1.6e+02 Score=27.69 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
+.++.....+++++||+.+|+|...+-.+|..|...|-+.-
T Consensus 20 L~~l~~~~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~ 60 (257)
T PRK15090 20 LQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQ 60 (257)
T ss_pred HHHhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 33333335699999999999999999999999999998754
No 458
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=22.26 E-value=9.6e+02 Score=25.51 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=24.8
Q ss_pred hhhhHHHHh-HHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 131 NERLWFKTN-LKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 131 ~~kl~~r~~-~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
++.....+. -.+-+.|.+..+|.+|.+++..+.+.
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 333333333 34447788889999999999988887
No 459
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=22.11 E-value=98 Score=22.35 Aligned_cols=25 Identities=8% Similarity=0.368 Sum_probs=18.1
Q ss_pred HhCCChHHHHHHHHHhHHcCceeEE
Q 014350 364 ELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 364 ~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
-.+.+.++++..|.+++.+|++.+.
T Consensus 30 ~~~~s~~eL~~fL~~lv~e~~L~~~ 54 (60)
T PF08672_consen 30 GYDISLEELQEFLDRLVEEGKLECS 54 (60)
T ss_dssp -TT--HHHHHHHHHHHHHTTSEE--
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEec
Confidence 3456788999999999999998764
No 460
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=22.10 E-value=1.1e+02 Score=25.12 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=38.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
-..|++++||+.+..|.-.+-..|-+|...|-|.=.--.+.| .+.+..+
T Consensus 17 ~~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~ 68 (115)
T PF12793_consen 17 PVEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKS 68 (115)
T ss_pred CcceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeC
Confidence 358999999999999999999999999999999644444444 4555544
No 461
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=21.97 E-value=2.2e+02 Score=23.92 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=39.1
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
.++..+||+.++++...+-..+-+|...|-|.-.-|..++ .|..+++
T Consensus 46 ~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 95 (144)
T PRK03573 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEK 95 (144)
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChH
Confidence 4678999999999999999999999999999888776666 4444444
No 462
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=21.91 E-value=6.9e+02 Score=23.73 Aligned_cols=120 Identities=13% Similarity=0.196 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR-LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~-~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (426)
.++|-+.|....+.. ..+...+...+.+-+. .++.+.|...|...++.+ +. ....+..-++++....+
T Consensus 17 ~~~aR~vF~~a~~~~----~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~-----~~~~~~~Y~~~l~~~~d- 85 (280)
T PF05843_consen 17 IEAARKVFKRARKDK----RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PS-----DPDFWLEYLDFLIKLND- 85 (280)
T ss_dssp HHHHHHHHHHHHCCC----CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC-----CHHHHHHHHHHHHHhCc-
Confidence 788888999886332 2345778888999777 567777999999999887 44 23445555666555444
Q ss_pred ChhHHHHHHHHHHHHHHhhh-hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 111 NFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~-~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
.+....+++.++..+-... -+.+| .+..++-...|+.+...++.+.....+.
T Consensus 86 -~~~aR~lfer~i~~l~~~~~~~~iw----~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 86 -INNARALFERAISSLPKEKQSKKIW----KKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHH----HHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhcCchhHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 4455566665444322111 11233 5667777888999999888888887764
No 463
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=21.87 E-value=1e+02 Score=34.45 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHcCceeE-EEecCCCEEEEecCchhhHHHHHhc
Q 014350 370 KDVEQLLVSLILDNRIDG-HIDQVNRLLERGDRSAYLTFLLLKK 412 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~a-kID~~~g~v~~~~~~~~~~~~~~~~ 412 (426)
+.+-.++.+++..|.|+| |||+++|. .+|..|.+-+-+.-
T Consensus 233 ~~~h~~i~~lv~~g~vdGlRIDh~dGL---~dP~~Yl~rLr~~~ 273 (825)
T TIGR02401 233 DATHRLVLELVAEGLVDGLRIDHIDGL---ADPEGYLRRLRELV 273 (825)
T ss_pred HHHHHHHHHHHHcCCCceEEecccccc---CChHHHHHHHHHhc
Confidence 466789999999999998 99999997 67877866664443
No 464
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=21.87 E-value=1.8e+02 Score=24.98 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=36.6
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE--E--EecCCC-EEEE
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--H--IDQVNR-LLER 398 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a--k--ID~~~g-~v~~ 398 (426)
+...++=++||+.+|++..+|-+.|.+|-.++.+.+ + -|..+| ....
T Consensus 12 ~~~~~~dedLa~~l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~ 63 (147)
T smart00531 12 RNGCVTEEDLAELLGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRY 63 (147)
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEE
Confidence 456799999999999999999999999999877632 2 355556 4443
No 465
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=21.82 E-value=76 Score=20.51 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=14.6
Q ss_pred cchhHHhHhCCChHHHHHH
Q 014350 357 RIPFISKELNVPEKDVEQL 375 (426)
Q Consensus 357 ~l~~iA~~l~l~~~evE~~ 375 (426)
++..||+++|++.+++..+
T Consensus 8 tl~~IA~~~~~~~~~l~~~ 26 (44)
T PF01476_consen 8 TLWSIAKRYGISVDELMEL 26 (44)
T ss_dssp -HHHHHHHTTS-HHHHHHH
T ss_pred cHHHHHhhhhhhHhHHHHh
Confidence 5788999999999988764
No 466
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=21.81 E-value=2.4e+02 Score=25.54 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHH
Q 014350 298 MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (426)
Q Consensus 298 l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~ 377 (426)
+..++.++.++++..+...+++.. -+.+..+.+.+.++.+-....+-|+.|-.+-.+++.++==.+.++....
T Consensus 27 ~~e~l~~~~~~~~~~~~~~~~~i~-------~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~ 99 (214)
T PF01865_consen 27 LAELLEAYLEGDYEDVEELLEEIK-------ELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAAK 99 (214)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777666665554432 2445667788888888778888899988888888877766667776666
Q ss_pred HhHHcC
Q 014350 378 SLILDN 383 (426)
Q Consensus 378 ~lI~~g 383 (426)
.+..-+
T Consensus 100 ~l~~~~ 105 (214)
T PF01865_consen 100 RLSLYK 105 (214)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 655443
No 467
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=21.55 E-value=1.5e+02 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
.+..+..-=...+...+|..||++...+-+.+...+
T Consensus 9 lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~ 44 (53)
T PF13613_consen 9 LLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWI 44 (53)
T ss_pred HHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHH
Confidence 334444444678899999999999998888777655
No 468
>PHA02591 hypothetical protein; Provisional
Probab=21.51 E-value=88 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.7
Q ss_pred cccchhHHhHhCCChHHHHHHHH
Q 014350 355 RIRIPFISKELNVPEKDVEQLLV 377 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~ 377 (426)
-.|.+.||+.||++.+.|-+++.
T Consensus 59 GlSqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 59 GFTVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHh
Confidence 45788999999999999988764
No 469
>PRK11523 DNA-binding transcriptional repressor ExuR; Provisional
Probab=21.38 E-value=2.9e+02 Score=25.78 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhcccccccc-chhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRIR-IPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I~-l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+.+++.|+..-+..-+.|=.++. -..||+.||+|..-|-.-|..|-..|.|.-+ +..|+.+..
T Consensus 11 ~~v~~~l~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~L~~eGlV~~~--~~~G~~V~~ 74 (253)
T PRK11523 11 QQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVR--KGSGIHVVS 74 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCeeEEec
Confidence 45566666555566667878994 7899999999999999999999999999744 345665543
No 470
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.79 E-value=1.4e+02 Score=20.77 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=19.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLV 377 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~ 377 (426)
...|+=..||+.+|+++..|-+-++
T Consensus 26 ~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 26 VERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp -SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CeeECHHHHHHHHCCCHHHhcccCC
Confidence 5799999999999999999987664
No 471
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=8.8e+02 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHh
Q 014350 119 YQTTLKALEEAKNERLWFKTNLKLCKIWFDM 149 (426)
Q Consensus 119 ~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~ 149 (426)
|..+......+...++-.|+..+||.-+-++
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 3333333333334444445555555444333
No 472
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.60 E-value=7.5e+02 Score=23.65 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=48.9
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
.+.+++|++....|.++-|...+..+...-.... .....+.++.+++.-..|+-.+|-..++..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--------SLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--------CCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4557899999999999999999999988643211 124467788889999999988877776654
No 473
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=20.59 E-value=7.3e+02 Score=23.45 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCC-cchhhhhhHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhh----
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIK---- 212 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~-~d~~~~~~l~e~~l~e~rl~~~~~-d~~kak~~l~~a~~i~---- 212 (426)
...=|..+++.|++..|.++..-+.. +.+..+. .+ ...++-+.. +..... +-+.....++++.+-+
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~llie-v~~~~~~~~~----~~~~~rl~~---l~~~~~~~~p~r~~fi~~ai~WS~~~~ 84 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIE-VYEKSEDPVD----EESIARLIE---LISLFPPEEPERKKFIKAAIKWSKFGS 84 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH-HHHHTT---S----HHHHHHHHH---HHHHS-TT-TTHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHH-HHHHcCCCCC----HHHHHHHHH---HHHhCCCCcchHHHHHHHHHHHHccCC
Confidence 44567778888888777655433322 1111111 11 111222222 211121 1222444445543333
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
....+|.++ ..-|.+++.+++|..|..+|.-+
T Consensus 85 ~~~Gdp~LH----~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 85 YKFGDPELH----HLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp -TT--HHHH----HHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCCCCHHHH----HHHHHHHHhhccHHHHHHHHHhc
Confidence 122356554 45577778899999999998765
No 474
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=20.38 E-value=1e+02 Score=19.91 Aligned_cols=28 Identities=7% Similarity=0.141 Sum_probs=21.5
Q ss_pred cchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 357 ~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
++..+|+.+|++...+-.++. .|.+.+.
T Consensus 2 s~~e~a~~lgvs~~tl~~~~~----~g~~~~~ 29 (49)
T cd04762 2 TTKEAAELLGVSPSTLRRWVK----EGKLKAI 29 (49)
T ss_pred CHHHHHHHHCcCHHHHHHHHH----cCCCCce
Confidence 678899999999887776654 5777654
No 475
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=20.33 E-value=1.5e+02 Score=29.13 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=37.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~ 393 (426)
.-.+=++||+.||+|...|-++|.++...|-+.-+|+.+.
T Consensus 28 ~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~ 67 (318)
T PRK15418 28 DGLTQSEIGERLGLTRLKVSRLLEKGRQSGIIRVQINSRF 67 (318)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHcCcEEEEEeCCC
Confidence 5888999999999999999999999999999999998764
No 476
>PRK00215 LexA repressor; Validated
Probab=20.31 E-value=1.6e+02 Score=26.63 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=34.7
Q ss_pred cccchhHHhHhCC-ChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 355 RIRIPFISKELNV-PEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 355 ~I~l~~iA~~l~l-~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
..++.+||+.+|+ +..-+-..|.+|...|.|.-.-+. ...+.+
T Consensus 23 ~~s~~ela~~~~~~~~~tv~~~l~~L~~~g~i~~~~~~-~r~~~l 66 (205)
T PRK00215 23 PPSRREIADALGLRSPSAVHEHLKALERKGFIRRDPGR-SRAIEV 66 (205)
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEeCCCC-cceEEe
Confidence 4789999999999 999999999999999999654433 334444
No 477
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=20.24 E-value=3.4e+02 Score=24.86 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=39.4
Q ss_pred ccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 350 IKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 350 ~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..|=+++ +=..||+.+|+|-..|-+-|..|+.+|.|.-+ |+.|+.+..
T Consensus 26 ~~~G~~LPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~--~G~GtfV~~ 74 (238)
T TIGR02325 26 LRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAE--QGRGTFVAA 74 (238)
T ss_pred CCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCEEEECC
Confidence 3444566 77899999999999999999999999999765 777776643
No 478
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.18 E-value=1.1e+03 Score=27.83 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 014350 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI---MDFVSGSASQNFSLLREFYQTTLKALEE 128 (426)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~i---l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 128 (426)
...+++..+++++...|++++++.+-.+-.-.-++..++.--.++.... +-.+... +.......+..++....-
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~---~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVK---NLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhcc---CccchhhhHHHHHHhhcc
Confidence 3678999999999999999999876654322221222211111111111 1111110 111222222222221110
Q ss_pred hhhhh---hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014350 129 AKNER---LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (426)
Q Consensus 129 ~~~~k---l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l 205 (426)
+ .+. --.-+..++..++...++++.|.++++...+...+..|..+ ..-...+..-.|++...+++..|....
T Consensus 1048 s-~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~----l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1048 S-SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE----LETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred c-cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc----hhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 0 000 00022357888888889999999999999887655444211 222334444456666666666665554
Q ss_pred HHH
Q 014350 206 QKA 208 (426)
Q Consensus 206 ~~a 208 (426)
+.+
T Consensus 1123 k~t 1125 (1236)
T KOG1839|consen 1123 KVT 1125 (1236)
T ss_pred hhH
Confidence 443
No 479
>PRK06771 hypothetical protein; Provisional
Probab=20.07 E-value=65 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=24.4
Q ss_pred cccchhHHhHhCCChH--HHHHHHHHhHHcCc
Q 014350 355 RIRIPFISKELNVPEK--DVEQLLVSLILDNR 384 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~--evE~~l~~lI~~g~ 384 (426)
...++.|++.+|++.. ++...+.+++.+|+
T Consensus 36 e~~L~~I~~~~Gi~~~~~~~~~e~~~Li~~Gk 67 (93)
T PRK06771 36 EDRLQLITKEMGIVDREPPVNKELRQLMEEGQ 67 (93)
T ss_pred HHHHHHHHHHcCCCCCcccccHHHHHHHHcCC
Confidence 3467889999999765 67788999999986
Done!