Query 014350
Match_columns 426
No_of_seqs 225 out of 999
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 1.5E-60 5E-65 475.2 34.4 341 50-402 15-363 (394)
2 4b4t_P 26S proteasome regulato 100.0 1.9E-55 6.5E-60 449.4 27.7 374 17-404 17-408 (445)
3 4b4t_Q 26S proteasome regulato 100.0 2E-43 6.7E-48 355.5 38.7 374 21-402 8-403 (434)
4 4b4t_R RPN7, 26S proteasome re 100.0 1.9E-42 6.5E-47 352.2 17.5 387 14-416 6-411 (429)
5 4b4t_O 26S proteasome regulato 99.9 1E-24 3.5E-29 218.8 20.2 253 145-401 85-353 (393)
6 4b4t_S RPN3, 26S proteasome re 99.9 1.2E-21 4E-26 198.8 17.3 217 182-405 231-452 (523)
7 3t5x_A PCI domain-containing p 99.8 2E-20 6.7E-25 170.5 13.3 169 221-401 13-193 (203)
8 3t5v_B Nuclear mRNA export pro 99.8 2.1E-17 7.2E-22 167.0 27.9 245 152-401 142-429 (455)
9 1ufm_A COP9 complex subunit 4; 99.7 5.1E-18 1.7E-22 131.5 4.0 72 332-403 7-78 (84)
10 3sf4_A G-protein-signaling mod 99.3 3.2E-09 1.1E-13 103.7 28.9 239 11-257 3-262 (406)
11 3ro2_A PINS homolog, G-protein 99.3 4.9E-09 1.7E-13 98.9 28.5 230 20-257 8-258 (338)
12 4a1s_A PINS, partner of inscut 99.2 8.4E-09 2.9E-13 101.6 28.2 230 20-257 51-298 (411)
13 3ulq_A Response regulator aspa 99.2 1.7E-08 5.9E-13 99.2 26.7 211 28-248 115-332 (383)
14 3ro2_A PINS homolog, G-protein 99.1 7.8E-09 2.7E-13 97.5 23.3 110 137-252 224-333 (338)
15 3sf4_A G-protein-signaling mod 99.1 1.9E-08 6.5E-13 98.2 26.6 222 29-258 100-343 (406)
16 4a1s_A PINS, partner of inscut 99.1 2E-08 6.7E-13 99.0 23.8 221 30-258 140-379 (411)
17 3q15_A PSP28, response regulat 99.1 6.5E-08 2.2E-12 95.1 26.5 183 28-220 113-299 (378)
18 2ifu_A Gamma-SNAP; membrane fu 99.1 8.4E-08 2.9E-12 91.9 26.4 212 29-249 4-222 (307)
19 3chm_A COP9 signalosome comple 99.0 8.5E-10 2.9E-14 96.6 10.6 126 263-400 25-156 (169)
20 3edt_B KLC 2, kinesin light ch 99.0 5.4E-08 1.9E-12 89.6 22.8 218 28-251 13-281 (283)
21 3nf1_A KLC 1, kinesin light ch 99.0 2E-07 6.8E-12 87.3 24.8 218 28-251 39-307 (311)
22 1qqe_A Vesicular transport pro 98.9 7.4E-07 2.5E-11 84.6 26.8 235 56-332 39-275 (292)
23 1qqe_A Vesicular transport pro 98.9 4.9E-07 1.7E-11 85.8 23.4 194 14-215 33-232 (292)
24 3q15_A PSP28, response regulat 98.8 8.7E-07 3E-11 86.9 24.1 208 54-272 101-309 (378)
25 3ulq_A Response regulator aspa 98.8 1.9E-06 6.5E-11 84.4 25.2 204 59-273 108-313 (383)
26 3gw4_A Uncharacterized protein 98.8 3.7E-06 1.3E-10 73.8 23.5 182 27-259 3-184 (203)
27 3uq3_A Heat shock protein STI1 98.8 9.5E-06 3.2E-10 73.5 27.0 200 28-253 17-238 (258)
28 3nf1_A KLC 1, kinesin light ch 98.7 7.6E-06 2.6E-10 76.4 26.8 196 51-252 24-225 (311)
29 3u3w_A Transcriptional activat 98.7 3.9E-06 1.3E-10 79.4 22.6 198 53-258 74-273 (293)
30 2ifu_A Gamma-SNAP; membrane fu 98.7 4.2E-06 1.4E-10 79.9 23.0 190 16-215 34-227 (307)
31 3ro3_A PINS homolog, G-protein 98.6 5.2E-06 1.8E-10 69.1 20.2 157 50-254 5-161 (164)
32 3u3w_A Transcriptional activat 98.6 1.4E-06 4.7E-11 82.5 18.4 185 27-219 86-274 (293)
33 3vtx_A MAMA; tetratricopeptide 98.6 2.2E-06 7.5E-11 74.5 18.3 152 29-250 18-169 (184)
34 4eqf_A PEX5-related protein; a 98.6 2.7E-06 9.2E-11 82.3 20.1 197 29-252 78-311 (365)
35 2qfc_A PLCR protein; TPR, HTH, 98.6 5.5E-06 1.9E-10 78.3 21.8 199 54-260 75-275 (293)
36 2pl2_A Hypothetical conserved 98.6 5.3E-06 1.8E-10 74.9 20.4 194 28-248 17-211 (217)
37 3qky_A Outer membrane assembly 98.6 1E-05 3.4E-10 74.8 22.6 187 18-253 16-226 (261)
38 3hym_B Cell division cycle pro 98.6 1.3E-05 4.6E-10 75.3 23.7 193 31-250 106-298 (330)
39 2qfc_A PLCR protein; TPR, HTH, 98.6 3.6E-06 1.2E-10 79.6 19.4 185 28-220 87-275 (293)
40 1fch_A Peroxisomal targeting s 98.5 2.6E-05 9E-10 74.9 24.8 52 29-84 77-128 (368)
41 4b0z_A RPN12, 26S proteasome r 98.5 2.3E-06 7.8E-11 78.9 15.5 180 191-378 16-214 (229)
42 1hz4_A MALT regulatory protein 98.5 8.4E-05 2.9E-09 72.0 27.7 213 28-250 26-243 (373)
43 2ho1_A Type 4 fimbrial biogene 98.5 1.5E-05 5.3E-10 72.4 21.1 191 28-252 49-239 (252)
44 2vq2_A PILW, putative fimbrial 98.5 6E-05 2E-09 66.6 24.2 188 29-249 21-209 (225)
45 3ieg_A DNAJ homolog subfamily 98.5 2E-05 6.7E-10 74.9 22.3 196 28-251 132-335 (359)
46 1fch_A Peroxisomal targeting s 98.5 1E-05 3.4E-10 77.9 20.4 194 29-255 111-318 (368)
47 2q7f_A YRRB protein; TPR, prot 98.5 9.8E-06 3.3E-10 72.9 19.0 196 20-251 26-222 (243)
48 3u4t_A TPR repeat-containing p 98.5 1.2E-05 4E-10 74.0 19.7 123 28-165 15-137 (272)
49 3ieg_A DNAJ homolog subfamily 98.5 5.6E-05 1.9E-09 71.7 24.4 204 29-251 84-301 (359)
50 4eqf_A PEX5-related protein; a 98.5 1.4E-05 4.8E-10 77.2 20.1 200 33-251 44-276 (365)
51 2y4t_A DNAJ homolog subfamily 98.4 7.9E-05 2.7E-09 73.7 26.0 107 137-251 212-324 (450)
52 4i17_A Hypothetical protein; T 98.4 3.1E-05 1.1E-09 69.6 20.8 127 28-211 19-146 (228)
53 3u4t_A TPR repeat-containing p 98.4 2E-05 6.8E-10 72.4 19.3 170 55-253 4-173 (272)
54 3cv0_A Peroxisome targeting si 98.4 0.00012 4E-09 68.7 24.8 209 20-251 24-269 (327)
55 3cv0_A Peroxisome targeting si 98.4 5E-05 1.7E-09 71.3 22.0 208 28-253 67-317 (327)
56 2yhc_A BAMD, UPF0169 lipoprote 98.4 5.7E-05 1.9E-09 68.3 21.2 172 20-211 7-213 (225)
57 3hym_B Cell division cycle pro 98.4 2.6E-05 9E-10 73.3 19.6 189 29-252 35-223 (330)
58 2y4t_A DNAJ homolog subfamily 98.4 5.6E-05 1.9E-09 74.8 22.6 194 29-251 156-358 (450)
59 3fp2_A TPR repeat-containing p 98.3 6.6E-05 2.2E-09 76.0 22.4 193 30-252 290-492 (537)
60 1xnf_A Lipoprotein NLPI; TPR, 98.3 0.00014 4.7E-09 66.5 22.6 188 29-250 18-205 (275)
61 3as5_A MAMA; tetratricopeptide 98.3 5.7E-05 2E-09 64.3 18.7 154 29-252 21-174 (186)
62 2xpi_A Anaphase-promoting comp 98.3 6.1E-05 2.1E-09 77.6 21.2 104 137-251 476-579 (597)
63 2xpi_A Anaphase-promoting comp 98.3 8.4E-05 2.9E-09 76.5 21.9 190 28-253 317-506 (597)
64 1w3b_A UDP-N-acetylglucosamine 98.3 0.00013 4.4E-09 71.0 21.9 188 28-251 113-300 (388)
65 3ro3_A PINS homolog, G-protein 98.3 5.4E-05 1.8E-09 62.7 16.6 138 28-167 21-160 (164)
66 4gyw_A UDP-N-acetylglucosamine 98.2 2E-05 6.9E-10 84.6 17.0 152 29-250 22-173 (723)
67 3edt_B KLC 2, kinesin light ch 98.2 7.2E-05 2.4E-09 68.3 18.4 183 65-253 12-200 (283)
68 1w3b_A UDP-N-acetylglucosamine 98.2 0.00011 3.6E-09 71.6 20.6 192 29-250 46-265 (388)
69 1hz4_A MALT regulatory protein 98.2 0.00053 1.8E-08 66.3 25.4 198 49-254 9-206 (373)
70 2gw1_A Mitochondrial precursor 98.2 8.3E-05 2.8E-09 74.6 20.1 119 137-269 373-494 (514)
71 4b4t_Q 26S proteasome regulato 98.2 0.00019 6.4E-09 70.8 22.0 190 60-258 10-211 (434)
72 3fp2_A TPR repeat-containing p 98.2 8.6E-05 2.9E-09 75.2 19.4 192 29-251 256-457 (537)
73 4abn_A Tetratricopeptide repea 98.2 0.00015 5.2E-09 73.6 21.2 191 28-244 114-314 (474)
74 3gw4_A Uncharacterized protein 98.1 0.00017 5.7E-09 62.9 17.3 151 28-225 38-190 (203)
75 3uq3_A Heat shock protein STI1 98.1 0.0016 5.6E-08 58.4 24.0 105 53-166 4-109 (258)
76 3urz_A Uncharacterized protein 98.1 0.00017 5.7E-09 64.5 17.0 158 28-252 16-187 (208)
77 2gw1_A Mitochondrial precursor 98.1 0.00019 6.3E-09 72.0 18.9 191 29-252 202-402 (514)
78 3vtx_A MAMA; tetratricopeptide 98.0 0.00053 1.8E-08 59.1 18.2 132 53-250 4-135 (184)
79 2q7f_A YRRB protein; TPR, prot 98.0 0.00034 1.2E-08 62.5 17.5 155 28-212 69-223 (243)
80 3n71_A Histone lysine methyltr 98.0 6.7E-05 2.3E-09 76.8 14.1 139 28-210 321-463 (490)
81 2vq2_A PILW, putative fimbrial 98.0 0.0021 7.2E-08 56.3 21.8 169 53-251 7-176 (225)
82 4ga2_A E3 SUMO-protein ligase 97.9 3.9E-05 1.3E-09 65.1 9.6 121 29-213 10-131 (150)
83 3qky_A Outer membrane assembly 97.9 0.0007 2.4E-08 62.1 18.9 144 28-212 64-225 (261)
84 2vsy_A XCC0866; transferase, g 97.9 0.00019 6.5E-09 74.3 15.9 153 29-251 2-157 (568)
85 4g1t_A Interferon-induced prot 97.9 0.00029 9.9E-09 70.3 16.7 208 30-251 227-459 (472)
86 1ouv_A Conserved hypothetical 97.9 0.0031 1.1E-07 58.0 22.6 176 29-250 19-214 (273)
87 2ho1_A Type 4 fimbrial biogene 97.9 0.0017 5.6E-08 58.6 20.1 168 53-250 36-203 (252)
88 1ouv_A Conserved hypothetical 97.8 0.0021 7.1E-08 59.1 20.5 176 29-250 55-250 (273)
89 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.0036 1.2E-07 56.2 21.5 188 52-250 2-212 (225)
90 4i17_A Hypothetical protein; T 97.8 0.002 6.8E-08 57.5 19.4 138 55-251 8-146 (228)
91 4gcn_A Protein STI-1; structur 97.8 0.00049 1.7E-08 56.4 13.7 101 139-251 11-112 (127)
92 1xnf_A Lipoprotein NLPI; TPR, 97.8 0.00091 3.1E-08 60.9 17.1 53 28-84 55-107 (275)
93 2pl2_A Hypothetical conserved 97.8 0.0019 6.4E-08 57.9 18.6 165 54-251 5-180 (217)
94 4abn_A Tetratricopeptide repea 97.8 0.0009 3.1E-08 67.9 18.0 186 32-251 84-287 (474)
95 3mkr_A Coatomer subunit epsilo 97.8 0.01 3.4E-07 55.9 24.0 150 27-211 10-159 (291)
96 3mkr_A Coatomer subunit epsilo 97.7 0.0026 8.8E-08 60.0 19.7 193 21-254 38-232 (291)
97 1a17_A Serine/threonine protei 97.7 0.0011 3.7E-08 55.5 15.0 30 54-83 13-42 (166)
98 2h6f_A Protein farnesyltransfe 97.7 0.0015 5.2E-08 64.5 17.9 238 30-344 111-366 (382)
99 4gcn_A Protein STI-1; structur 97.7 0.0017 6E-08 53.0 15.5 116 53-224 7-122 (127)
100 2fo7_A Synthetic consensus TPR 97.7 0.0016 5.6E-08 51.6 14.9 117 30-210 15-131 (136)
101 2pzi_A Probable serine/threoni 97.7 0.00077 2.6E-08 71.7 16.2 153 27-250 402-562 (681)
102 4gyw_A UDP-N-acetylglucosamine 97.6 0.0015 5.2E-08 70.0 18.4 132 53-250 8-139 (723)
103 1p5q_A FKBP52, FK506-binding p 97.6 0.00051 1.8E-08 66.4 13.5 149 53-252 146-295 (336)
104 3as5_A MAMA; tetratricopeptide 97.6 0.0019 6.5E-08 54.5 15.7 122 28-213 54-175 (186)
105 2e2e_A Formate-dependent nitri 97.6 0.0015 5E-08 56.0 14.3 121 28-212 22-145 (177)
106 4g1t_A Interferon-induced prot 97.6 0.0023 7.8E-08 63.6 17.2 203 28-251 63-276 (472)
107 4gco_A Protein STI-1; structur 97.6 0.00055 1.9E-08 56.1 10.5 87 28-166 25-111 (126)
108 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.0022 7.4E-08 56.4 15.2 140 18-212 7-151 (213)
109 2fo7_A Synthetic consensus TPR 97.5 0.0066 2.2E-07 47.9 16.8 130 55-250 2-131 (136)
110 2r5s_A Uncharacterized protein 97.5 0.00051 1.8E-08 59.3 9.8 154 28-209 18-171 (176)
111 1a17_A Serine/threonine protei 97.5 0.012 4.2E-07 48.8 18.2 94 139-248 50-143 (166)
112 1hh8_A P67PHOX, NCF-2, neutrop 97.5 0.0039 1.3E-07 54.7 15.5 135 55-252 7-151 (213)
113 3n71_A Histone lysine methyltr 97.4 0.0031 1.1E-07 64.5 16.4 108 138-250 353-463 (490)
114 3qww_A SET and MYND domain-con 97.4 0.00077 2.6E-08 67.8 11.6 103 29-171 311-417 (433)
115 4gco_A Protein STI-1; structur 97.4 0.0038 1.3E-07 50.9 13.9 94 139-250 16-109 (126)
116 3qou_A Protein YBBN; thioredox 97.3 0.0021 7.1E-08 60.4 12.7 154 28-209 129-282 (287)
117 2ond_A Cleavage stimulation fa 97.3 0.022 7.5E-07 53.6 19.5 191 32-253 80-272 (308)
118 1elr_A TPR2A-domain of HOP; HO 97.2 0.011 3.8E-07 46.6 14.4 101 139-251 7-108 (131)
119 3qwp_A SET and MYND domain-con 97.2 0.0041 1.4E-07 62.4 14.3 104 29-172 300-407 (429)
120 2vsy_A XCC0866; transferase, g 97.2 0.0066 2.3E-07 62.5 16.4 124 29-216 36-162 (568)
121 2xev_A YBGF; tetratricopeptide 97.2 0.0046 1.6E-07 49.4 12.1 94 28-167 14-107 (129)
122 2xev_A YBGF; tetratricopeptide 97.2 0.014 4.7E-07 46.5 15.0 102 139-252 5-106 (129)
123 3upv_A Heat shock protein STI1 97.2 0.0033 1.1E-07 50.5 11.0 87 28-166 16-102 (126)
124 2pzi_A Probable serine/threoni 97.1 0.0031 1.1E-07 67.0 13.1 118 29-211 446-563 (681)
125 2vgx_A Chaperone SYCD; alterna 97.1 0.014 4.8E-07 48.8 14.8 113 38-214 9-121 (148)
126 2xcb_A PCRH, regulatory protei 97.1 0.0098 3.3E-07 49.1 13.6 113 38-214 6-118 (142)
127 3gyz_A Chaperone protein IPGC; 97.1 0.012 4E-07 50.0 14.2 100 53-212 35-134 (151)
128 2lni_A Stress-induced-phosphop 97.0 0.0098 3.3E-07 47.3 12.3 86 29-166 29-114 (133)
129 3upv_A Heat shock protein STI1 97.0 0.033 1.1E-06 44.4 15.3 96 139-252 7-102 (126)
130 3k9i_A BH0479 protein; putativ 97.0 0.0039 1.3E-07 49.7 9.6 90 29-167 3-92 (117)
131 3rkv_A Putative peptidylprolyl 97.0 0.035 1.2E-06 46.5 16.0 118 53-212 10-127 (162)
132 3sz7_A HSC70 cochaperone (SGT) 97.0 0.019 6.6E-07 48.3 14.3 97 138-252 13-109 (164)
133 3gyz_A Chaperone protein IPGC; 97.0 0.027 9.1E-07 47.7 14.9 98 137-252 37-134 (151)
134 1p5q_A FKBP52, FK506-binding p 97.0 0.012 3.9E-07 56.7 14.2 114 28-201 159-283 (336)
135 3sz7_A HSC70 cochaperone (SGT) 97.0 0.04 1.4E-06 46.3 16.1 103 53-215 10-112 (164)
136 1hxi_A PEX5, peroxisome target 97.0 0.0039 1.3E-07 50.4 9.1 86 28-165 29-114 (121)
137 2vyi_A SGTA protein; chaperone 96.9 0.016 5.3E-07 45.6 12.6 86 29-166 25-110 (131)
138 3rjv_A Putative SEL1 repeat pr 96.9 0.18 6.1E-06 44.5 20.7 178 33-250 3-196 (212)
139 1wao_1 Serine/threonine protei 96.9 0.0023 7.9E-08 65.0 9.0 118 28-207 18-135 (477)
140 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.054 1.9E-06 54.4 19.0 145 53-248 267-411 (457)
141 4ga2_A E3 SUMO-protein ligase 96.9 0.0091 3.1E-07 50.1 11.2 94 139-250 34-128 (150)
142 2ond_A Cleavage stimulation fa 96.9 0.07 2.4E-06 50.0 18.7 161 29-213 112-272 (308)
143 3q49_B STIP1 homology and U bo 96.9 0.023 7.9E-07 45.7 13.4 98 138-253 11-108 (137)
144 2xcb_A PCRH, regulatory protei 96.9 0.055 1.9E-06 44.4 15.8 96 139-252 21-116 (142)
145 3q49_B STIP1 homology and U bo 96.8 0.011 3.7E-07 47.7 11.0 89 28-168 21-109 (137)
146 2dba_A Smooth muscle cell asso 96.8 0.015 5.2E-07 47.1 11.8 97 21-166 32-129 (148)
147 2xm6_A Protein corresponding t 96.8 0.25 8.4E-06 49.5 23.1 177 29-249 56-250 (490)
148 2ooe_A Cleavage stimulation fa 96.8 0.072 2.5E-06 54.1 19.0 189 34-253 304-494 (530)
149 2dba_A Smooth muscle cell asso 96.8 0.027 9.4E-07 45.5 13.0 100 137-251 29-128 (148)
150 1elw_A TPR1-domain of HOP; HOP 96.8 0.016 5.3E-07 44.7 11.0 87 28-166 16-102 (118)
151 1elr_A TPR2A-domain of HOP; HO 96.8 0.04 1.4E-06 43.2 13.7 107 53-212 3-109 (131)
152 2vgx_A Chaperone SYCD; alterna 96.7 0.054 1.9E-06 45.1 14.9 97 138-252 23-119 (148)
153 3mv2_B Coatomer subunit epsilo 96.7 0.23 8E-06 47.3 20.8 179 35-276 85-270 (310)
154 2kck_A TPR repeat; tetratricop 96.7 0.013 4.4E-07 44.9 10.2 90 28-167 18-108 (112)
155 2c2l_A CHIP, carboxy terminus 96.7 0.02 7E-07 53.3 13.1 88 28-167 16-103 (281)
156 2fbn_A 70 kDa peptidylprolyl i 96.6 0.056 1.9E-06 46.9 14.8 116 53-212 37-152 (198)
157 2lni_A Stress-induced-phosphop 96.6 0.038 1.3E-06 43.6 12.7 97 137-251 17-113 (133)
158 2xm6_A Protein corresponding t 96.6 0.33 1.1E-05 48.6 22.3 48 29-82 200-251 (490)
159 2vyi_A SGTA protein; chaperone 96.6 0.089 3E-06 41.0 14.6 97 137-251 13-109 (131)
160 3rkv_A Putative peptidylprolyl 96.6 0.032 1.1E-06 46.8 12.5 108 138-251 13-126 (162)
161 1elw_A TPR1-domain of HOP; HOP 96.6 0.037 1.3E-06 42.5 11.9 95 139-251 7-101 (118)
162 1xi4_A Clathrin heavy chain; a 96.6 0.26 9E-06 55.9 22.5 176 29-248 998-1221(1630)
163 1ihg_A Cyclophilin 40; ppiase 96.6 0.093 3.2E-06 51.2 17.4 142 53-244 222-363 (370)
164 4b4t_T 26S proteasome regulato 96.5 0.025 8.4E-07 53.1 12.5 152 223-378 60-223 (274)
165 3ma5_A Tetratricopeptide repea 96.5 0.016 5.3E-07 44.9 9.4 72 29-105 20-91 (100)
166 1wi9_A Protein C20ORF116 homol 96.5 0.0053 1.8E-07 44.8 5.7 57 345-401 11-67 (72)
167 1hxi_A PEX5, peroxisome target 96.5 0.036 1.2E-06 44.5 11.6 94 139-250 20-113 (121)
168 2kck_A TPR repeat; tetratricop 96.4 0.017 5.8E-07 44.1 9.0 97 139-251 9-106 (112)
169 1na0_A Designed protein CTPR3; 96.3 0.12 4.1E-06 39.8 13.6 100 53-212 8-107 (125)
170 2kat_A Uncharacterized protein 96.3 0.033 1.1E-06 43.7 10.3 83 33-167 2-84 (115)
171 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.027 9.2E-07 56.6 11.9 91 28-166 280-381 (457)
172 1na0_A Designed protein CTPR3; 96.2 0.099 3.4E-06 40.3 12.9 96 138-251 11-106 (125)
173 2l6j_A TPR repeat-containing p 96.2 0.011 3.7E-07 45.6 6.8 90 139-240 7-96 (111)
174 2fbn_A 70 kDa peptidylprolyl i 96.2 0.054 1.9E-06 47.0 12.1 108 138-251 40-151 (198)
175 2kc7_A BFR218_protein; tetratr 96.2 0.032 1.1E-06 42.3 9.2 73 29-106 13-86 (99)
176 2h6f_A Protein farnesyltransfe 96.1 0.052 1.8E-06 53.4 12.7 132 53-250 96-228 (382)
177 3mv2_B Coatomer subunit epsilo 96.1 1 3.5E-05 42.8 21.3 174 29-220 113-289 (310)
178 2l6j_A TPR repeat-containing p 96.0 0.013 4.5E-07 45.2 6.2 53 28-84 16-68 (111)
179 3urz_A Uncharacterized protein 95.8 0.16 5.6E-06 44.5 13.5 95 139-251 7-117 (208)
180 2kat_A Uncharacterized protein 95.7 0.065 2.2E-06 41.9 9.5 56 28-88 31-86 (115)
181 2hr2_A Hypothetical protein; a 95.7 0.39 1.3E-05 41.0 14.9 112 54-168 11-134 (159)
182 3qww_A SET and MYND domain-con 95.7 0.19 6.6E-06 50.2 14.9 103 147-254 309-414 (433)
183 3qwp_A SET and MYND domain-con 95.6 0.35 1.2E-05 48.2 16.5 109 141-254 292-403 (429)
184 1ihg_A Cyclophilin 40; ppiase 95.6 0.12 4.1E-06 50.4 12.6 107 139-251 226-336 (370)
185 2e2e_A Formate-dependent nitri 95.5 0.13 4.4E-06 43.4 11.2 97 138-252 46-145 (177)
186 2c2l_A CHIP, carboxy terminus 95.5 0.11 3.7E-06 48.3 11.5 96 139-252 7-102 (281)
187 4f3v_A ESX-1 secretion system 95.4 0.33 1.1E-05 45.5 14.5 215 13-250 3-236 (282)
188 1xi4_A Clathrin heavy chain; a 95.3 5.5 0.00019 45.5 26.0 164 23-211 1111-1309(1630)
189 2hr2_A Hypothetical protein; a 95.3 0.48 1.6E-05 40.4 13.8 110 139-251 14-131 (159)
190 3lpz_A GET4 (YOR164C homolog); 95.2 2.4 8.1E-05 40.6 24.8 253 27-334 23-285 (336)
191 3rjv_A Putative SEL1 repeat pr 95.2 0.75 2.6E-05 40.4 15.6 151 29-211 31-197 (212)
192 2if4_A ATFKBP42; FKBP-like, al 95.1 0.072 2.5E-06 51.1 9.3 151 53-251 178-328 (338)
193 4g26_A Pentatricopeptide repea 94.9 0.64 2.2E-05 47.2 16.1 172 55-248 27-201 (501)
194 2ooe_A Cleavage stimulation fa 94.8 1.1 3.6E-05 45.3 17.4 159 29-211 334-492 (530)
195 3ma5_A Tetratricopeptide repea 94.7 0.21 7.2E-06 38.2 9.4 65 138-214 9-73 (100)
196 3k9i_A BH0479 protein; putativ 94.5 0.19 6.4E-06 39.5 8.9 52 29-84 40-91 (117)
197 1na3_A Designed protein CTPR2; 94.2 0.16 5.4E-06 37.2 7.3 52 29-84 22-73 (91)
198 1rz4_A Eukaryotic translation 94.1 0.11 3.8E-06 47.2 7.4 94 291-398 95-189 (226)
199 2r5s_A Uncharacterized protein 94.1 1.4 4.8E-05 37.0 14.3 29 56-84 8-36 (176)
200 3qou_A Protein YBBN; thioredox 94.1 2 7E-05 39.5 16.4 31 54-84 117-147 (287)
201 3txn_A 26S proteasome regulato 93.8 5.5 0.00019 39.0 22.7 132 30-163 73-208 (394)
202 3bee_A Putative YFRE protein; 93.6 0.23 8E-06 38.1 7.5 49 32-84 25-73 (93)
203 2wpv_A GET4, UPF0363 protein Y 93.6 5 0.00017 38.0 21.9 129 27-160 24-158 (312)
204 2kc7_A BFR218_protein; tetratr 93.0 0.87 3E-05 33.9 9.9 61 140-212 4-65 (99)
205 2v5f_A Prolyl 4-hydroxylase su 92.7 0.69 2.4E-05 35.8 9.1 69 139-212 8-76 (104)
206 2if4_A ATFKBP42; FKBP-like, al 92.7 0.33 1.1E-05 46.4 8.6 107 138-250 181-292 (338)
207 1wao_1 Serine/threonine protei 92.3 0.25 8.7E-06 49.8 7.5 95 139-251 9-103 (477)
208 1na3_A Designed protein CTPR2; 92.1 1 3.5E-05 32.6 9.0 63 138-212 11-73 (91)
209 4b4t_R RPN7, 26S proteasome re 91.9 6.4 0.00022 38.9 17.2 107 54-165 131-237 (429)
210 4g26_A Pentatricopeptide repea 91.8 4.4 0.00015 40.9 16.1 157 28-210 38-203 (501)
211 2v5f_A Prolyl 4-hydroxylase su 91.6 0.23 7.8E-06 38.6 4.9 69 16-84 4-76 (104)
212 4f3v_A ESX-1 secretion system 91.4 0.66 2.3E-05 43.5 8.7 97 137-250 103-199 (282)
213 1pc2_A Mitochondria fission pr 91.3 0.37 1.2E-05 40.9 6.2 51 31-84 50-101 (152)
214 1xn7_A Hypothetical protein YH 91.2 0.25 8.6E-06 36.8 4.5 42 345-386 6-47 (78)
215 1qgp_A Protein (double strande 90.9 0.53 1.8E-05 34.9 6.1 49 344-392 17-68 (77)
216 2k02_A Ferrous iron transport 90.5 0.37 1.3E-05 36.7 4.9 44 345-388 6-49 (87)
217 3e4b_A ALGK; tetratricopeptide 90.0 6.5 0.00022 38.8 15.2 92 138-250 178-279 (452)
218 1qbj_A Protein (double-strande 89.5 1.1 3.7E-05 33.6 6.8 58 344-402 13-73 (81)
219 3e4b_A ALGK; tetratricopeptide 89.3 17 0.0006 35.6 20.9 174 31-250 160-350 (452)
220 1zu2_A Mitochondrial import re 89.1 1.4 4.7E-05 37.5 8.0 36 32-71 18-53 (158)
221 1b89_A Protein (clathrin heavy 88.8 1.2 4E-05 44.6 8.4 170 56-248 124-308 (449)
222 1klx_A Cysteine rich protein B 88.7 4.2 0.00014 32.9 10.7 112 30-165 9-126 (138)
223 2jt1_A PEFI protein; solution 88.3 0.61 2.1E-05 34.6 4.6 43 344-386 7-55 (77)
224 3ffl_A Anaphase-promoting comp 88.2 1.7 5.8E-05 37.2 7.9 123 21-166 24-152 (167)
225 1nzn_A CGI-135 protein, fissio 87.7 2.6 9E-05 34.3 8.5 64 19-84 37-104 (126)
226 1b89_A Protein (clathrin heavy 87.6 1.5 5.1E-05 43.8 8.4 118 28-162 44-174 (449)
227 1zu2_A Mitochondrial import re 87.4 0.74 2.5E-05 39.2 5.2 49 32-84 62-121 (158)
228 4b4t_P 26S proteasome regulato 87.4 19 0.00063 35.7 16.4 109 53-208 136-244 (445)
229 2heo_A Z-DNA binding protein 1 87.1 0.9 3.1E-05 32.5 4.8 41 347-387 16-57 (67)
230 3o48_A Mitochondria fission 1 84.8 1.9 6.4E-05 35.5 6.1 51 31-84 58-108 (134)
231 4e6h_A MRNA 3'-END-processing 84.3 44 0.0015 35.1 19.7 194 30-250 357-569 (679)
232 3t5v_A Nuclear mRNA export pro 83.7 2.7 9.2E-05 39.9 7.7 82 292-378 146-248 (316)
233 1y8m_A FIS1; mitochondria, unk 83.2 2.2 7.4E-05 35.6 5.9 66 16-84 38-107 (144)
234 2htj_A P fimbrial regulatory p 82.7 2.2 7.7E-05 31.4 5.4 35 353-387 12-46 (81)
235 3ffl_A Anaphase-promoting comp 78.5 11 0.00037 32.2 8.8 69 184-252 22-93 (167)
236 2cg4_A Regulatory protein ASNC 76.6 4.1 0.00014 33.8 5.7 48 346-393 13-63 (152)
237 3cuo_A Uncharacterized HTH-typ 75.1 7.7 0.00026 29.1 6.6 52 349-400 32-83 (99)
238 2cfx_A HTH-type transcriptiona 74.8 5.2 0.00018 32.9 5.8 48 345-392 9-59 (144)
239 2ia0_A Putative HTH-type trans 74.4 9.5 0.00033 32.4 7.6 47 346-392 22-71 (171)
240 2p5v_A Transcriptional regulat 73.8 5.3 0.00018 33.5 5.8 47 346-392 15-64 (162)
241 2b0l_A GTP-sensing transcripti 72.8 13 0.00044 28.7 7.4 55 348-402 35-90 (102)
242 2dbb_A Putative HTH-type trans 72.6 5.6 0.00019 32.9 5.6 47 346-392 14-63 (151)
243 1ub9_A Hypothetical protein PH 71.4 7 0.00024 29.3 5.5 48 353-400 28-78 (100)
244 3jth_A Transcription activator 71.2 12 0.00041 28.2 6.8 44 354-397 35-78 (98)
245 1oyi_A Double-stranded RNA-bin 71.1 4.6 0.00016 30.2 4.1 39 348-387 24-62 (82)
246 3i4p_A Transcriptional regulat 70.8 4.8 0.00016 33.9 4.8 50 344-393 6-58 (162)
247 3by6_A Predicted transcription 70.5 10 0.00034 30.6 6.5 63 335-399 14-77 (126)
248 1sfx_A Conserved hypothetical 70.3 8.9 0.0003 29.0 6.0 49 353-401 32-82 (109)
249 2w25_A Probable transcriptiona 70.2 7.6 0.00026 32.0 5.9 47 346-392 12-61 (150)
250 2y75_A HTH-type transcriptiona 70.1 7.5 0.00026 31.2 5.6 47 354-401 25-71 (129)
251 3tqn_A Transcriptional regulat 70.0 9.6 0.00033 29.9 6.1 64 335-400 12-76 (113)
252 1klx_A Cysteine rich protein B 69.6 18 0.0006 29.0 7.9 49 29-83 74-126 (138)
253 1zbp_A Hypothetical protein VP 68.0 31 0.0011 31.8 9.8 56 27-87 8-63 (273)
254 2v79_A DNA replication protein 67.9 9.7 0.00033 31.2 5.9 49 353-401 49-99 (135)
255 1pc2_A Mitochondria fission pr 67.8 26 0.00089 29.3 8.6 66 137-212 33-101 (152)
256 2e1c_A Putative HTH-type trans 67.4 5.4 0.00018 34.1 4.4 47 346-392 32-81 (171)
257 1q1h_A TFE, transcription fact 67.4 3.5 0.00012 32.1 3.0 43 346-388 24-66 (110)
258 1ylf_A RRF2 family protein; st 67.2 9.5 0.00032 31.6 5.8 46 354-401 29-74 (149)
259 2kko_A Possible transcriptiona 66.8 8.8 0.0003 29.8 5.2 38 354-391 37-74 (108)
260 1xd7_A YWNA; structural genomi 66.6 6.2 0.00021 32.6 4.5 55 344-401 13-67 (145)
261 3pqk_A Biofilm growth-associat 66.2 22 0.00075 26.9 7.4 48 354-401 35-82 (102)
262 2cyy_A Putative HTH-type trans 65.8 5.8 0.0002 32.8 4.2 47 346-392 12-61 (151)
263 3neu_A LIN1836 protein; struct 65.5 12 0.00041 30.0 6.0 63 335-399 16-79 (125)
264 2qlz_A Transcription factor PF 65.4 28 0.00095 31.3 8.9 46 352-400 175-220 (232)
265 1r1u_A CZRA, repressor protein 65.3 21 0.00071 27.4 7.2 38 354-391 38-75 (106)
266 2pn6_A ST1022, 150AA long hypo 65.2 6 0.00021 32.6 4.2 47 346-392 8-57 (150)
267 1y0u_A Arsenical resistance op 65.1 19 0.00063 27.0 6.7 44 354-401 42-85 (96)
268 2d1h_A ST1889, 109AA long hypo 64.4 11 0.00039 28.4 5.5 47 347-393 28-74 (109)
269 2ek5_A Predicted transcription 64.1 17 0.00057 29.4 6.6 63 335-399 7-70 (129)
270 2vkj_A TM1634; membrane protei 63.8 18 0.00063 27.3 6.0 48 137-191 54-101 (106)
271 3bdd_A Regulatory protein MARR 63.4 14 0.00046 29.5 6.0 43 352-394 42-84 (142)
272 3tgn_A ADC operon repressor AD 63.0 9.1 0.00031 30.8 4.9 54 347-401 44-100 (146)
273 2gxg_A 146AA long hypothetical 62.8 17 0.00057 29.1 6.5 49 353-401 48-99 (146)
274 3bpv_A Transcriptional regulat 62.6 17 0.00059 28.7 6.5 44 352-395 40-83 (138)
275 3lwf_A LIN1550 protein, putati 62.5 19 0.00064 30.3 6.8 47 354-401 43-89 (159)
276 2nnn_A Probable transcriptiona 62.5 23 0.00077 28.0 7.2 43 353-395 50-92 (140)
277 4b4t_O 26S proteasome regulato 62.4 24 0.00084 34.2 8.6 133 62-203 47-190 (393)
278 4ham_A LMO2241 protein; struct 62.3 16 0.00053 29.6 6.1 63 335-399 17-80 (134)
279 1jgs_A Multiple antibiotic res 62.3 14 0.00048 29.3 5.9 49 353-401 46-97 (138)
280 1i1g_A Transcriptional regulat 62.0 8.2 0.00028 31.3 4.4 42 346-387 9-50 (141)
281 2fbi_A Probable transcriptiona 61.5 23 0.00079 28.0 7.1 43 353-395 48-90 (142)
282 2fbh_A Transcriptional regulat 61.2 14 0.00048 29.6 5.7 51 351-401 48-101 (146)
283 1v4r_A Transcriptional repress 60.5 4.6 0.00016 31.1 2.4 62 336-399 15-77 (102)
284 3t8r_A Staphylococcus aureus C 60.2 20 0.00068 29.4 6.5 57 345-402 16-74 (143)
285 2hzt_A Putative HTH-type trans 60.2 22 0.00074 27.4 6.4 49 353-401 25-77 (107)
286 4h7y_A Dual specificity protei 60.1 48 0.0016 27.8 8.6 66 133-211 58-123 (161)
287 2a61_A Transcriptional regulat 60.0 26 0.00089 27.9 7.2 43 353-395 45-87 (145)
288 1sfu_A 34L protein; protein/Z- 59.7 20 0.00067 26.2 5.4 40 349-388 23-62 (75)
289 1s3j_A YUSO protein; structura 58.4 16 0.00056 29.6 5.7 53 349-401 45-100 (155)
290 1lj9_A Transcriptional regulat 58.3 17 0.00058 29.1 5.7 49 353-401 41-92 (144)
291 2oqg_A Possible transcriptiona 57.9 28 0.00095 26.7 6.8 37 354-390 33-69 (114)
292 1tbx_A ORF F-93, hypothetical 57.5 24 0.00082 26.4 6.2 49 353-401 20-72 (99)
293 3f6o_A Probable transcriptiona 57.3 21 0.00071 28.0 5.9 38 354-391 30-67 (118)
294 3bja_A Transcriptional regulat 57.2 14 0.00048 29.2 5.0 42 353-394 45-86 (139)
295 3b73_A PHIH1 repressor-like pr 57.1 16 0.00054 28.8 5.1 54 345-401 17-72 (111)
296 3bee_A Putative YFRE protein; 57.0 39 0.0013 25.2 7.2 48 198-251 25-72 (93)
297 3k0l_A Repressor protein; heli 56.8 18 0.00062 29.8 5.8 50 352-401 57-109 (162)
298 3oop_A LIN2960 protein; protei 56.3 14 0.00047 29.7 4.8 49 353-401 49-100 (143)
299 3bj6_A Transcriptional regulat 56.2 16 0.00054 29.6 5.3 53 349-401 48-103 (152)
300 2qvo_A Uncharacterized protein 55.5 19 0.00063 27.0 5.1 47 355-401 30-76 (95)
301 2qww_A Transcriptional regulat 55.2 16 0.00053 29.7 5.0 49 353-401 53-106 (154)
302 1xmk_A Double-stranded RNA-spe 54.8 15 0.0005 27.2 4.2 40 347-386 17-57 (79)
303 2rdp_A Putative transcriptiona 54.7 30 0.001 27.7 6.8 49 353-401 54-105 (150)
304 3bro_A Transcriptional regulat 54.7 24 0.00081 28.0 6.0 47 355-401 50-99 (141)
305 1on2_A Transcriptional regulat 54.3 24 0.00083 28.3 6.1 48 351-401 18-65 (142)
306 3ech_A MEXR, multidrug resista 54.2 11 0.00038 30.3 3.9 42 353-394 49-90 (142)
307 3eco_A MEPR; mutlidrug efflux 54.0 20 0.00069 28.4 5.5 48 354-401 46-96 (139)
308 1r1t_A Transcriptional repress 54.0 77 0.0026 24.9 8.9 37 354-390 58-94 (122)
309 3mkq_A Coatomer beta'-subunit; 53.8 76 0.0026 32.9 11.4 26 140-165 685-710 (814)
310 3hsr_A HTH-type transcriptiona 53.6 18 0.00061 29.0 5.1 55 347-401 42-99 (140)
311 2hr3_A Probable transcriptiona 53.6 22 0.00075 28.5 5.7 49 353-401 48-99 (147)
312 3nrv_A Putative transcriptiona 53.5 15 0.00053 29.5 4.7 50 352-401 51-103 (148)
313 1u2w_A CADC repressor, cadmium 53.3 41 0.0014 26.5 7.1 38 353-390 54-91 (122)
314 3g3z_A NMB1585, transcriptiona 53.2 17 0.00058 29.2 4.9 49 353-401 43-94 (145)
315 2eth_A Transcriptional regulat 53.0 25 0.00086 28.6 6.0 49 353-401 56-107 (154)
316 2xvc_A ESCRT-III, SSO0910; cel 52.9 15 0.00052 25.2 3.6 33 354-386 24-56 (59)
317 1uly_A Hypothetical protein PH 52.7 22 0.00074 30.9 5.7 35 354-388 32-66 (192)
318 2k9l_A RNA polymerase sigma fa 52.3 11 0.00037 27.5 3.1 26 353-378 46-71 (76)
319 2nyx_A Probable transcriptiona 52.2 22 0.00075 29.5 5.6 49 353-401 57-108 (168)
320 4fhn_B Nucleoporin NUP120; pro 51.9 2.8E+02 0.0097 30.7 20.6 204 58-274 846-1077(1139)
321 2bv6_A MGRA, HTH-type transcri 51.2 21 0.00071 28.5 5.1 49 353-401 49-100 (142)
322 3cjn_A Transcriptional regulat 50.9 24 0.00081 28.9 5.6 49 353-401 64-115 (162)
323 3cdh_A Transcriptional regulat 50.9 20 0.00069 29.1 5.1 55 347-401 49-106 (155)
324 2ff4_A Probable regulatory pro 50.7 39 0.0013 32.6 7.8 54 27-84 182-235 (388)
325 3f8m_A GNTR-family protein tra 50.2 42 0.0014 30.2 7.5 62 334-400 16-78 (248)
326 3s2w_A Transcriptional regulat 50.1 19 0.00066 29.4 4.9 49 353-401 62-113 (159)
327 2p5k_A Arginine repressor; DNA 50.0 48 0.0017 22.3 6.3 51 342-397 6-61 (64)
328 1u5t_A Appears to BE functiona 49.8 1.3E+02 0.0044 27.0 10.4 70 355-426 113-192 (233)
329 2pg4_A Uncharacterized protein 49.6 18 0.0006 27.1 4.1 47 355-401 30-78 (95)
330 3nqo_A MARR-family transcripti 49.4 29 0.00099 29.6 6.0 50 352-401 54-106 (189)
331 1z7u_A Hypothetical protein EF 49.4 34 0.0012 26.5 5.9 42 354-395 34-76 (112)
332 2pex_A Transcriptional regulat 49.1 21 0.00072 28.9 4.9 49 353-401 59-110 (153)
333 3ic7_A Putative transcriptiona 49.1 15 0.0005 29.5 3.7 63 335-399 14-77 (126)
334 2ff4_A Probable regulatory pro 48.6 1.9E+02 0.0064 27.6 13.7 67 134-212 169-235 (388)
335 4hbl_A Transcriptional regulat 48.6 17 0.00058 29.5 4.2 50 352-401 52-104 (149)
336 1yyv_A Putative transcriptiona 48.4 80 0.0027 25.2 8.2 42 353-394 46-88 (131)
337 2fa5_A Transcriptional regulat 48.2 20 0.00069 29.3 4.7 49 353-401 61-112 (162)
338 2jsc_A Transcriptional regulat 48.1 37 0.0013 26.5 6.0 56 354-410 33-88 (118)
339 2lnb_A Z-DNA-binding protein 1 47.3 36 0.0012 24.9 5.1 40 346-385 25-64 (80)
340 3r0a_A Putative transcriptiona 46.9 59 0.002 25.6 7.1 37 356-392 43-79 (123)
341 3k69_A Putative transcription 46.5 35 0.0012 28.6 5.9 49 353-402 26-74 (162)
342 2fsw_A PG_0823 protein; alpha- 46.1 46 0.0016 25.4 6.2 42 353-394 36-78 (107)
343 2x4h_A Hypothetical protein SS 45.8 31 0.0011 27.5 5.4 51 347-401 23-73 (139)
344 2pi2_A Replication protein A 3 45.5 4.4 0.00015 37.5 0.0 38 354-391 223-261 (270)
345 2wv0_A YVOA, HTH-type transcri 45.1 50 0.0017 29.5 7.2 64 335-400 13-77 (243)
346 3dra_A Protein farnesyltransfe 44.9 1.9E+02 0.0065 26.7 14.4 129 29-164 123-286 (306)
347 3kp7_A Transcriptional regulat 44.5 22 0.00076 28.7 4.3 54 347-401 44-102 (151)
348 1z6r_A MLC protein; transcript 44.4 28 0.00096 33.7 5.7 43 345-387 20-62 (406)
349 1ku9_A Hypothetical protein MJ 44.4 32 0.0011 27.3 5.3 41 354-394 40-80 (152)
350 3u64_A Protein TP_0956; tetrat 44.2 88 0.003 29.2 8.6 88 32-168 179-272 (301)
351 3e6m_A MARR family transcripti 44.0 25 0.00085 28.9 4.6 49 353-401 65-116 (161)
352 2jpc_A SSRB; DNA binding prote 44.0 34 0.0012 22.8 4.6 29 353-381 11-39 (61)
353 3sxy_A Transcriptional regulat 43.8 51 0.0017 28.7 6.9 63 335-399 15-77 (218)
354 4h7y_A Dual specificity protei 43.4 1.5E+02 0.005 24.9 11.0 61 112-187 76-136 (161)
355 1z91_A Organic hydroperoxide r 43.4 19 0.00066 28.8 3.7 49 353-401 52-103 (147)
356 3f3x_A Transcriptional regulat 42.8 65 0.0022 25.5 6.9 39 357-395 52-90 (144)
357 3c7j_A Transcriptional regulat 42.8 35 0.0012 30.5 5.6 64 333-398 27-90 (237)
358 3iuo_A ATP-dependent DNA helic 42.6 20 0.00068 28.7 3.5 33 354-386 31-64 (122)
359 1z05_A Transcriptional regulat 42.2 32 0.0011 33.6 5.8 43 345-387 43-85 (429)
360 2hoe_A N-acetylglucosamine kin 41.9 9.1 0.00031 37.0 1.6 51 336-387 12-65 (380)
361 2qx5_A Nucleoporin NIC96; mRNA 41.8 1.3E+02 0.0044 31.4 10.5 125 33-165 423-567 (661)
362 2f2e_A PA1607; transcription f 41.7 46 0.0016 27.2 5.8 42 353-394 35-76 (146)
363 1j5y_A Transcriptional regulat 41.4 48 0.0016 28.3 6.1 47 341-387 21-69 (187)
364 2pjp_A Selenocysteine-specific 41.2 67 0.0023 25.2 6.6 69 355-426 20-91 (121)
365 2wte_A CSA3; antiviral protein 40.7 53 0.0018 29.6 6.5 47 353-401 164-210 (244)
366 2frh_A SARA, staphylococcal ac 40.6 19 0.00064 28.6 3.1 48 354-401 52-102 (127)
367 2bgc_A PRFA; bacterial infecti 40.2 21 0.0007 31.4 3.7 61 355-420 169-232 (238)
368 4a0z_A Transcription factor FA 39.8 35 0.0012 29.5 5.0 46 338-383 9-54 (190)
369 3c57_A Two component transcrip 39.1 38 0.0013 25.4 4.5 37 344-382 33-69 (95)
370 3fm5_A Transcriptional regulat 39.0 33 0.0011 27.6 4.5 48 354-401 53-103 (150)
371 2fu4_A Ferric uptake regulatio 38.8 85 0.0029 22.4 6.4 43 345-387 21-70 (83)
372 3bwg_A Uncharacterized HTH-typ 38.8 59 0.002 28.9 6.6 62 336-399 9-71 (239)
373 3df8_A Possible HXLR family tr 38.6 69 0.0024 24.7 6.2 56 345-401 32-88 (111)
374 3f6v_A Possible transcriptiona 38.5 61 0.0021 26.7 6.1 52 340-393 58-109 (151)
375 3deu_A Transcriptional regulat 38.0 51 0.0018 27.2 5.7 49 353-401 66-117 (166)
376 2lkp_A Transcriptional regulat 37.7 92 0.0032 23.9 6.9 35 354-388 44-78 (119)
377 3edp_A LIN2111 protein; APC883 37.4 50 0.0017 29.4 5.8 65 335-401 12-77 (236)
378 2rnj_A Response regulator prot 37.0 45 0.0015 24.6 4.6 30 353-382 42-71 (91)
379 3ihu_A Transcriptional regulat 36.9 98 0.0033 26.9 7.6 64 334-399 18-81 (222)
380 3boq_A Transcriptional regulat 36.8 24 0.00081 28.8 3.3 50 352-401 59-111 (160)
381 2vn2_A DNAD, chromosome replic 36.1 23 0.00079 28.4 3.0 35 356-390 52-86 (128)
382 2ijq_A Hypothetical protein; s 36.0 1.1E+02 0.0039 25.6 7.4 65 188-252 38-105 (161)
383 1je8_A Nitrate/nitrite respons 35.8 50 0.0017 23.9 4.6 30 353-382 34-63 (82)
384 2p7v_B Sigma-70, RNA polymeras 35.8 33 0.0011 23.7 3.4 29 353-381 23-51 (68)
385 3t72_q RNA polymerase sigma fa 35.5 49 0.0017 25.3 4.7 28 354-381 38-65 (99)
386 1fse_A GERE; helix-turn-helix 35.5 53 0.0018 22.7 4.6 29 353-381 24-52 (74)
387 3mkq_A Coatomer beta'-subunit; 35.3 1.6E+02 0.0054 30.4 10.2 28 56-83 683-710 (814)
388 4aik_A Transcriptional regulat 35.2 98 0.0034 25.1 6.9 48 354-401 45-95 (151)
389 4ady_A RPN2, 26S proteasome re 34.4 4.9E+02 0.017 28.4 14.8 98 61-165 77-174 (963)
390 2oz6_A Virulence factor regula 34.0 60 0.0021 27.3 5.6 42 355-400 164-205 (207)
391 3dv8_A Transcriptional regulat 33.9 44 0.0015 28.5 4.8 45 355-403 169-213 (220)
392 1ucr_A Protein DSVD; dissimila 33.8 39 0.0013 24.7 3.4 35 352-386 18-53 (78)
393 2fxa_A Protease production reg 33.6 41 0.0014 29.2 4.5 49 353-401 60-111 (207)
394 2zcw_A TTHA1359, transcription 33.5 46 0.0016 28.1 4.7 45 355-403 146-190 (202)
395 1r7j_A Conserved hypothetical 33.4 82 0.0028 23.7 5.6 42 356-401 21-62 (95)
396 3ly7_A Transcriptional activat 33.4 75 0.0026 30.6 6.6 50 29-83 290-339 (372)
397 3dkw_A DNR protein; CRP-FNR, H 33.0 50 0.0017 28.3 5.0 45 354-402 177-221 (227)
398 4b8x_A SCO5413, possible MARR- 32.8 72 0.0024 25.7 5.6 51 351-401 47-100 (147)
399 1x3u_A Transcriptional regulat 32.7 82 0.0028 22.0 5.4 30 353-382 29-58 (79)
400 3eet_A Putative GNTR-family tr 32.6 70 0.0024 29.2 6.0 64 335-400 32-96 (272)
401 2l0k_A Stage III sporulation p 32.1 39 0.0013 25.7 3.5 33 344-377 10-42 (93)
402 2k9m_A RNA polymerase sigma fa 32.1 32 0.0011 27.9 3.2 26 353-378 37-62 (130)
403 3u2r_A Regulatory protein MARR 32.1 56 0.0019 26.8 5.0 48 354-401 61-111 (168)
404 4ev0_A Transcription regulator 31.9 49 0.0017 28.1 4.7 46 354-403 162-207 (216)
405 2gqq_A Leucine-responsive regu 31.7 18 0.0006 30.3 1.6 40 348-387 20-59 (163)
406 3la7_A Global nitrogen regulat 31.6 67 0.0023 28.1 5.7 45 355-403 193-237 (243)
407 3b02_A Transcriptional regulat 31.5 47 0.0016 27.9 4.5 46 355-404 139-184 (195)
408 2gau_A Transcriptional regulat 31.2 75 0.0026 27.3 5.9 46 354-403 179-224 (232)
409 3kae_A CDC27, possible protein 31.0 1.6E+02 0.0053 25.4 7.3 56 29-84 75-144 (242)
410 2cru_A Programmed cell death p 30.9 17 0.00059 29.0 1.3 51 341-391 38-88 (118)
411 3jw4_A Transcriptional regulat 30.7 25 0.00084 28.3 2.3 41 354-394 56-96 (148)
412 3i71_A Ethanolamine utilizatio 30.5 79 0.0027 21.7 4.3 41 347-387 9-50 (68)
413 3hrs_A Metalloregulator SCAR; 30.3 63 0.0021 28.3 5.1 53 346-401 11-63 (214)
414 3dss_A Geranylgeranyl transfer 30.3 1.4E+02 0.0047 28.2 7.8 64 32-98 254-317 (331)
415 2hs5_A Putative transcriptiona 30.2 86 0.003 27.7 6.1 63 335-399 31-93 (239)
416 1hw1_A FADR, fatty acid metabo 30.1 81 0.0028 27.6 5.9 62 335-398 10-72 (239)
417 2vxz_A Pyrsv_GP04; viral prote 30.1 72 0.0025 26.5 4.9 42 344-386 14-55 (165)
418 1zyb_A Transcription regulator 29.7 68 0.0023 27.8 5.3 44 354-401 185-228 (232)
419 3hug_A RNA polymerase sigma fa 29.6 62 0.0021 23.8 4.3 30 352-381 50-79 (92)
420 1nzn_A CGI-135 protein, fissio 29.3 2.2E+02 0.0074 22.7 8.1 66 137-212 36-104 (126)
421 3ulq_B Transcriptional regulat 29.0 72 0.0024 23.7 4.5 28 354-381 43-70 (90)
422 3kp1_E D-ornithine aminomutase 28.9 1.1E+02 0.0037 24.4 5.5 59 326-385 18-77 (121)
423 1wy6_A Hypothetical protein ST 28.7 1.7E+02 0.0057 24.3 6.8 130 18-165 8-154 (172)
424 1tc3_C Protein (TC3 transposas 28.4 33 0.0011 21.3 2.2 27 354-380 20-46 (51)
425 2w48_A Sorbitol operon regulat 28.2 1E+02 0.0034 28.6 6.5 42 352-393 18-59 (315)
426 3cuq_B Vacuolar protein-sortin 27.9 2.6E+02 0.009 24.5 8.8 59 367-426 114-179 (218)
427 1ku3_A Sigma factor SIGA; heli 27.8 47 0.0016 23.3 3.2 28 354-381 29-56 (73)
428 2pft_A Exocytosis protein; hel 27.6 1.4E+02 0.0048 30.4 7.9 81 296-380 486-567 (571)
429 2z99_A Putative uncharacterize 26.8 2.6E+02 0.0089 24.7 8.4 65 341-409 19-87 (219)
430 2e9h_A EIF-5, eukaryotic trans 26.7 90 0.0031 26.1 5.1 60 357-419 45-107 (157)
431 3e6c_C CPRK, cyclic nucleotide 26.7 74 0.0025 27.9 5.0 57 355-416 177-233 (250)
432 3dss_A Geranylgeranyl transfer 26.7 3.9E+02 0.013 24.9 13.5 18 148-165 287-304 (331)
433 3mkq_B Coatomer subunit alpha; 26.6 2.9E+02 0.01 23.4 9.4 48 27-83 16-63 (177)
434 1tty_A Sigma-A, RNA polymerase 26.4 53 0.0018 24.0 3.4 28 354-381 37-64 (87)
435 3pvv_A Chromosomal replication 26.3 1.4E+02 0.0049 22.8 5.9 45 299-344 54-98 (101)
436 2qc0_A Uncharacterized protein 26.1 4.1E+02 0.014 25.2 10.5 56 356-414 312-367 (373)
437 2di3_A Bacterial regulatory pr 26.0 85 0.0029 27.6 5.3 67 335-401 7-76 (239)
438 3e97_A Transcriptional regulat 25.9 54 0.0019 28.2 3.9 44 355-402 175-218 (231)
439 2p4w_A Transcriptional regulat 25.8 2.7E+02 0.0093 23.9 8.4 39 353-391 26-64 (202)
440 1t6s_A Conserved hypothetical 25.7 1.6E+02 0.0054 24.7 6.6 56 355-410 22-82 (162)
441 2xzm_8 RPS25E,; ribosome, tran 25.7 1.3E+02 0.0045 24.6 5.7 52 350-401 57-109 (143)
442 4gns_B Protein CSD3, chitin bi 25.6 77 0.0026 33.7 5.5 48 29-80 350-397 (754)
443 2d74_B Translation initiation 25.6 75 0.0026 26.4 4.3 59 356-419 47-108 (148)
444 2o8x_A Probable RNA polymerase 25.6 57 0.0019 22.2 3.3 29 353-381 29-57 (70)
445 4a5n_A Uncharacterized HTH-typ 25.6 1.6E+02 0.0056 23.5 6.4 42 353-394 37-79 (131)
446 3ryp_A Catabolite gene activat 25.6 53 0.0018 27.7 3.7 32 355-386 167-198 (210)
447 3d0s_A Transcriptional regulat 25.5 55 0.0019 28.1 3.9 45 355-403 177-221 (227)
448 3k2z_A LEXA repressor; winged 25.4 80 0.0027 27.0 4.8 34 355-388 24-57 (196)
449 1bia_A BIRA bifunctional prote 24.6 80 0.0027 29.5 5.0 43 344-386 8-50 (321)
450 2fmy_A COOA, carbon monoxide o 24.6 59 0.002 27.8 3.9 45 354-402 166-211 (220)
451 1ft9_A Carbon monoxide oxidati 24.4 56 0.0019 28.0 3.7 32 355-386 163-194 (222)
452 4b0z_A RPN12, 26S proteasome r 24.3 16 0.00055 32.7 -0.0 110 301-411 104-215 (229)
453 1ldd_A APC2WHB, anaphase promo 24.3 93 0.0032 22.5 4.1 37 350-386 17-64 (74)
454 4b4t_S RPN3, 26S proteasome re 24.2 3.3E+02 0.011 27.4 9.6 66 137-209 232-297 (523)
455 3iwz_A CAP-like, catabolite ac 24.2 58 0.002 27.9 3.7 42 355-400 187-228 (230)
456 2h09_A Transcriptional regulat 23.5 1.2E+02 0.0039 24.5 5.3 45 354-401 53-97 (155)
457 3fx3_A Cyclic nucleotide-bindi 23.3 81 0.0028 27.2 4.6 46 355-405 178-223 (237)
458 2zkz_A Transcriptional repress 23.3 2.3E+02 0.0078 20.9 7.0 36 354-390 40-75 (99)
459 3cuq_B Vacuolar protein-sortin 23.3 1.9E+02 0.0064 25.5 6.9 44 354-399 167-210 (218)
460 1eij_A Hypothetical protein MT 23.0 34 0.0012 25.2 1.6 22 370-391 37-58 (80)
461 3eqx_A FIC domain containing t 22.9 3.5E+02 0.012 25.7 9.3 52 355-409 311-362 (373)
462 2cwy_A Hypothetical protein TT 22.6 1.2E+02 0.0041 22.9 4.7 59 191-251 10-68 (94)
463 3u64_A Protein TP_0956; tetrat 22.5 3.3E+02 0.011 25.2 8.6 66 138-214 201-272 (301)
464 3mzy_A RNA polymerase sigma-H 22.1 1E+02 0.0035 24.6 4.7 29 352-380 121-149 (164)
465 3ax2_A Mitochondrial import re 21.2 2.3E+02 0.008 20.3 6.8 36 134-169 15-50 (73)
466 1p4w_A RCSB; solution structur 21.1 1.1E+02 0.0036 23.2 4.2 29 353-381 47-75 (99)
467 2b1e_A Exocyst complex compone 21.1 1.8E+02 0.0062 29.5 7.2 67 313-380 497-563 (564)
468 2fh0_A Hypothetical 16.0 kDa p 21.0 38 0.0013 25.1 1.4 22 370-391 35-56 (81)
469 2dk5_A DNA-directed RNA polyme 20.2 1.4E+02 0.0047 22.3 4.6 37 354-390 35-71 (91)
470 1k8b_A EIF-2-beta, probable tr 20.2 1.8E+02 0.006 19.4 4.6 38 357-399 13-50 (52)
471 3mkq_B Coatomer subunit alpha; 20.0 4E+02 0.014 22.5 10.6 26 140-165 38-63 (177)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.5e-60 Score=475.18 Aligned_cols=341 Identities=24% Similarity=0.404 Sum_probs=316.2
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhh
Q 014350 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (426)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 129 (426)
.+....++.+++++|.++|+++++.++++.+++++ +.++|++++|+||+++|.++.+|+ ....++++|+++++|+
T Consensus 15 ~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~----~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 15 IRIKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDA----GTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999 999999999999999999999887 3578899999999999
Q ss_pred hhh-hhHHH--HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014350 130 KNE-RLWFK--TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (426)
Q Consensus 130 ~~~-kl~~r--~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~ 206 (426)
.++ |.|+| ++.+||++|++.|+|.+|.+++.+++.+|.+. || +..++|+++.|+++|+..+|+++++.+++
T Consensus 90 ~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd---~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 90 KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DD---KNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SC---THHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---cc---chhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 876 57777 55599999999999999999999999999875 35 38999999999999999999999999999
Q ss_pred HHHhhhccC-CChhHHHHHHHhhHHHhH-HhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCC--CCCCC
Q 014350 207 KALAIKSAI-PHPRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE--VNPFD 282 (426)
Q Consensus 207 ~a~~i~~~~-~~p~~~~~i~~~~g~~~~-~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~--~~~~~ 282 (426)
+|+++.+++ ++|.+++.+++|+|++|+ .+++|++|+++|+++|++|++.+++.+.++++|++||+||++++ ++++.
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l 243 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLV 243 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 999999998 679999999999999999 99999999999999999999999999999999999999999774 33333
Q ss_pred c-ccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhH
Q 014350 283 G-QEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFI 361 (426)
Q Consensus 283 s-~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~i 361 (426)
+ +...+| .+|+++|+..|+.+|+++|+..|..+++.+++.+..||++.+|+..|+++|+++|++++++||++|+|++|
T Consensus 244 ~~~~~~~~-~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 244 SGKLAITY-SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp HSHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred cccccccc-CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 3 334556 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 362 SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 362 A~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
|+.||+|++++|++|++||.+|+|+|+|||++|+|++.+++
T Consensus 323 A~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 323 AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 99999999999999999999999999999999999998873
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-55 Score=449.44 Aligned_cols=374 Identities=13% Similarity=0.160 Sum_probs=315.5
Q ss_pred HhHHHHhhcccCCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014350 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (426)
Q Consensus 17 ~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (426)
--..+++|+.++++|+++|++.+..+.+... +|..|++|++.+++++|++.|+|+.+++++..|.+. +++.|++++
T Consensus 17 ~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk--r~qlk~ai~ 94 (445)
T 4b4t_P 17 LKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK--HGQLKLSIQ 94 (445)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT--TTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--hhhhHHHHH
Confidence 4467899999999999999999998876543 689999999999999999999999999999988886 577999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH-----HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccC
Q 014350 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (426)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-----r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~ 169 (426)
++|+.++++++..|+.+.+....+ .+++.+++++|+|+ |++.+||++|++.|+|.+|+++|++++++|+..
T Consensus 95 ~~V~~~~~~l~~~~~~d~~~~~~~----i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDLNTRISV----IETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHH----HHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhcCCchhHHHHHHH----HHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 999999999998776333344443 34566688999987 788999999999999999999999999999854
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh-ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 170 DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK-SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 170 ~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~-~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
||+ .+++|+++.|+|+|+..+|+.+|+.+++++++.. +...+|.+++.++.|+|++|+++++|.+|+++|+++
T Consensus 171 ---~~~---~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 171 ---MEM---SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp ---SCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ---ccH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 564 8999999999999999999999999999986533 445579999999999999999999999999999999
Q ss_pred Hhhhhhhcch-hHHHHHHHHHHHHHhhCCCCCCCCcccccc-cC--CCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHh
Q 014350 249 FKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQEAKP-YK--NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTI 324 (426)
Q Consensus 249 ~~~~~~~~~~-~~~~~lky~~L~~lL~~~~~~~~~s~~~~~-~~--~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l 324 (426)
|++|+..+++ .+..+++++++|.+|++. ++..+...++ +. ..+++|++..|+++|.++++..|..+++.|+..+
T Consensus 245 ~~~~~~~~d~~~~~~~L~~~v~~~iLa~~--~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 245 YQTDAIKSDEAKWKPVLSHIVYFLVLSPY--GNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSSC--SSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 9999988876 667889999999999843 3333332222 21 2467899999999999999999999999999999
Q ss_pred cCChhH------HHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 325 MDDPFI------RNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 325 ~~D~~l------~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
..|+++ ..||..|++++++||++++++||++|++++||++||+|++++|.++++||.+|+|+|+|||++|+|+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F 402 (445)
T 4b4t_P 323 NEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNF 402 (445)
T ss_dssp TTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC
T ss_pred cccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEE
Confidence 888876 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchh
Q 014350 399 GDRSAY 404 (426)
Q Consensus 399 ~~~~~~ 404 (426)
.++++.
T Consensus 403 ~~~~~~ 408 (445)
T 4b4t_P 403 EKPKNS 408 (445)
T ss_dssp ------
T ss_pred CCCCCh
Confidence 877543
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-43 Score=355.47 Aligned_cols=374 Identities=19% Similarity=0.304 Sum_probs=327.5
Q ss_pred HHhhccc-CCCCHHHHHHHHHHHhcCCcc-------------chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh
Q 014350 21 SILEKGL-VETDPEGALAGFAEVVAMEPE-------------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS 86 (426)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~-------------~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~ 86 (426)
+.+|+.+ .++++++|++.|+++++..+. ...+..+++.+|+.+|.+.|+|+++.++|+.++++. +
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~ 86 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-M 86 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-H
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-H
Confidence 4456654 456899999999999987652 135678899999999999999999999999999999 8
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 87 ~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
..+++.++++++.+++.+...++ +.+...+++..+++......+..++.++..+||.+|.+.|+|++|.++++++.+.+
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPD-SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCS-CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 88999999999999999988776 45566777777666655555566788999999999999999999999999999998
Q ss_pred ccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHHhhHHHhHHhhcHHHHHHHH
Q 014350 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDF 245 (426)
Q Consensus 167 ~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~f 245 (426)
... +|+ ..++++++.++++|...||+.+|+.++++++++.+.+++ |..++.++.++|.++.++++|.+|+++|
T Consensus 166 ~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 166 KKL---DDK---PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp TTS---SCS---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred Hhc---ccc---hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 865 453 778999999999999999999999999999999888876 5788999999999999999999999999
Q ss_pred HHHHhhhhhhcc----hhHHHHHHHHHHHHHhhCCC---CCCCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHH
Q 014350 246 FEAFKNYDEAGN----QRRIQCLKYLVLANMLMESE---VNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILK 318 (426)
Q Consensus 246 ~ea~~~~~~~~~----~~~~~~lky~~L~~lL~~~~---~~~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~ 318 (426)
.++|++++..+. +.+..+++|++++.++.+.. .+++.++...++..+++++++..++.+|.++++..|+..+.
T Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 319 (434)
T 4b4t_Q 240 FESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALK 319 (434)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999986554 36677889999999987542 12455565666666788999999999999999999999999
Q ss_pred HhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 319 SNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 319 ~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
.+...+..|+++..|+..+.++++++++.++++||++|++++||+.||+|++++|.+|++||.+|+|+|+||+++|+|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~ 399 (434)
T 4b4t_Q 320 QYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYV 399 (434)
T ss_dssp HTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCc
Q 014350 399 GDRS 402 (426)
Q Consensus 399 ~~~~ 402 (426)
.+++
T Consensus 400 ~~~~ 403 (434)
T 4b4t_Q 400 YETP 403 (434)
T ss_dssp C---
T ss_pred CCCc
Confidence 8763
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-42 Score=352.19 Aligned_cols=387 Identities=11% Similarity=0.123 Sum_probs=267.8
Q ss_pred hhhHhHHHHhhcccCCCCHHHHHHHHHHHhcCC-ccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh-----hh
Q 014350 14 TVSRVLCSILEKGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIK-----SA 87 (426)
Q Consensus 14 ~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~-~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~-----~~ 87 (426)
+-+..+.|+++...+-.|++-|...|.-..... +++.+|..+.+..++ .+.++.+ +|..+.+.+. ..
T Consensus 6 e~~~e~~y~d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~i---k~~~ma~----~y~~l~~~l~~~~~~~~ 78 (429)
T 4b4t_R 6 EKSQEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKI---KEEEMAP----YYKYLCEEYLVNNGQSD 78 (429)
T ss_dssp ------------------------------------CHHHHHHHHHHHH---HHTCCHH----HHHHHHHHSCCCCSCCS
T ss_pred hhhhhccccCcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHHH---HHhCCHH----HHHHHHHHHhhcccchh
Confidence 345668899988788888888888885442222 234555555555544 4444444 3444443320 12
Q ss_pred hhhhHHHHHHHHHHHHhcC----CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHH
Q 014350 88 VTRNYSEKCINNIMDFVSG----SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (426)
Q Consensus 88 ~~k~~~~k~v~~il~~~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~ 163 (426)
..+.+....++....+... .+..|.....++.+...+..+....+..|.+.+.+||++|++.|++++|.+.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~ 158 (429)
T 4b4t_R 79 LEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSL 158 (429)
T ss_dssp SCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2444455555444332221 222233334444333332222222334577899999999999999999999999999
Q ss_pred hhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHH
Q 014350 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (426)
Q Consensus 164 ~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~ 243 (426)
..|+.+ ..++++++.++|+++..+|+..++..+++++.......+|..+++++.|+|+++++.++|.+|++
T Consensus 159 ~~~~~~---------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~ 229 (429)
T 4b4t_R 159 SKAIST---------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK 229 (429)
T ss_dssp HHHTCC---------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH
T ss_pred HhcCCh---------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 999743 45899999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCC----CCCCcccccccC-CCcccHHHHHHHHHHhhCCHHHHHH-HH
Q 014350 244 DFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEV----NPFDGQEAKPYK-NDPEILAMTNLIAAYQRNEIIEFEK-IL 317 (426)
Q Consensus 244 ~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~----~~~~s~~~~~~~-~~~~~~~l~~L~~af~~~dl~~f~~-~l 317 (426)
+|+++|.+|+..+...+.+++.|++||++++.++. +++++++...+. ..|.++++..++.+|.++++..|.+ .+
T Consensus 230 ~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l 309 (429)
T 4b4t_R 230 LLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLL 309 (429)
T ss_dssp HHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998888889999999999999886543 367777766664 3577889999999999999999865 45
Q ss_pred HHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEE
Q 014350 318 KSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (426)
Q Consensus 318 ~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~ 397 (426)
..+...+..|+++++|++.|++++|+||+.++++||++|+|++||+.||+|++++|++|++||.+|+|+|+||+++|+|+
T Consensus 310 ~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~ 389 (429)
T 4b4t_R 310 ETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVE 389 (429)
T ss_dssp HHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEE
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEE
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCch---hhHHHHHhcCcee
Q 014350 398 RGDRSA---YLTFLLLKKNAYL 416 (426)
Q Consensus 398 ~~~~~~---~~~~~~~~~~~~~ 416 (426)
++++.. .++.++++-+..+
T Consensus 390 ~~~~d~~~~~y~~~i~~gd~Ll 411 (429)
T 4b4t_R 390 TNRPDNKNAQYHLLVKQGDGLL 411 (429)
T ss_dssp ECC-------------------
T ss_pred ECCCCchhHHHHHHHHHHHHHH
Confidence 988622 3555555544433
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-24 Score=218.79 Aligned_cols=253 Identities=18% Similarity=0.202 Sum_probs=198.9
Q ss_pred HHHHhccHHHHHHHHHHHHhhcccCCCCcc-----hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC--C
Q 014350 145 IWFDMGEYGRMSKILKELHKSCQREDGTDD-----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--H 217 (426)
Q Consensus 145 ~~~~~g~~~~A~~ll~el~~~~~~~~~~~d-----~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~--~ 217 (426)
...+..+.++|.++|.++...+...++... +......+.+.+..+++|+..+|...|+.+++++++..+... +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 345567889999999998776532211000 000123456667778999999999999999999987766554 5
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhh--cchhHHHHHHH-HHHHHHhhCCCCCCCCcccccc----cC
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKY-LVLANMLMESEVNPFDGQEAKP----YK 290 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~--~~~~~~~~lky-~~L~~lL~~~~~~~~~s~~~~~----~~ 290 (426)
|.+++.++.+.|.++...++|..++.+++..+.+++.. .++.....+.| +++|++++ +.+.+|+....++ ..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~-~~i~~f~eLL~~p~i~~L~ 243 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLG-DKIYNFGELLHHPIMETIV 243 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHC-CSSCSTHHHHHSCCTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcC-CCCCChHHHhCChHHHHhh
Confidence 89999999999999999999999999999999887743 33444444555 55566654 4566676544444 34
Q ss_pred CCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhc--cccccccchhHHhHhCCC
Q 014350 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLI--KPYTRIRIPFISKELNVP 368 (426)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~--~pYs~I~l~~iA~~l~l~ 368 (426)
++|+..|+.+|+++|..|++..|...+..+.+ ..|.+..|...+.+++|..++..++ .+|++|+++.||+.+++|
T Consensus 244 ~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~---~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~ 320 (393)
T 4b4t_O 244 NDSNYDWLFQLLNALTVGDFDKFDSLIKVQIS---KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLP 320 (393)
T ss_dssp SSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHH---HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC
T ss_pred cCCchHHHHHHHHHHhcCCHHHHHHHHHHhhh---hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC
Confidence 56889999999999999999999988776544 4589999999999999999998877 568999999999999999
Q ss_pred hHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 369 EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 369 ~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+++||.++++||.+|+|.|+|||++|+|+++..
T Consensus 321 ~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~ 353 (393)
T 4b4t_O 321 KDNVEHLVMRAISLGLLKGSIDQVNELVTISWV 353 (393)
T ss_dssp HHHHHHHHHHHHHHSCSSSCEETTTTEECC---
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEec
Confidence 999999999999999999999999999999763
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.2e-21 Score=198.81 Aligned_cols=217 Identities=14% Similarity=0.138 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh--hcchh
Q 014350 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQR 259 (426)
Q Consensus 182 ~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~--~~~~~ 259 (426)
.-++-+..|.|+..+++..|..++.++....+. .....++.+..|.|++++.+++|.+|..+|..|+..... .....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~-~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD-VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc-CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 345556779999999999999998876321111 123345789999999999999999999999999986432 23346
Q ss_pred HHHHHHHHHHHHHhhCCCCC--CCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHH
Q 014350 260 RIQCLKYLVLANMLMESEVN--PFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDL 337 (426)
Q Consensus 260 ~~~~lky~~L~~lL~~~~~~--~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L 337 (426)
...++||+++|.||.|.-.. .|.+ +.-...+.++..|++||..||+..|...+++++..|..|..+ ..+..|
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r~lf~q-----~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~rL 383 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPELSFFHQ-----SNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVRL 383 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHTT-----TSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHHH
T ss_pred HHHHHHHHHhHHhhcCCCCChHHhhc-----hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHHH
Confidence 78899999999999865211 1222 111134677889999999999999999999999999999876 368899
Q ss_pred HHHHHHHHHHHhccccccccchhHHhHhCCC-hHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhh
Q 014350 338 LKNVRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYL 405 (426)
Q Consensus 338 ~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~-~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~ 405 (426)
+..++.++++++..+|++|++++||..++++ ++++|..+++||.+|.|+|+|||.+|+|++.+.++..
T Consensus 384 r~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~y 452 (523)
T 4b4t_S 384 RSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIY 452 (523)
T ss_dssp HHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC-
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcccccc
Confidence 9999999999999999999999999999995 7899999999999999999999999999998766543
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=170.46 Aligned_cols=169 Identities=15% Similarity=0.231 Sum_probs=141.1
Q ss_pred HHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccHHHHH
Q 014350 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTN 300 (426)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~~l~~ 300 (426)
+..+..+.|++++.+++|.+|..+|.+||..++..+...+..+++|++.+.||.++ +++++.. .+|. ...+..
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~ll--~~~~----~~~y~~ 85 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH-MPTVELL--KKYH----LMQFAE 85 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC-EECHHHH--HHTT----CGGGHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC-CCCHHHh--hhCc----hhHHHH
Confidence 45788999999999999999999999999998877767889999999999999875 4332221 2332 235779
Q ss_pred HHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhcc------ccccccchhHHhHhC------CC
Q 014350 301 LIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIK------PYTRIRIPFISKELN------VP 368 (426)
Q Consensus 301 L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~------pYs~I~l~~iA~~l~------l~ 368 (426)
|++|+.+||+..|.+.++++++.|..|.. -.+.++++..+++.+++ +|++|+++.++..++ ++
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~-----~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGI-----FLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTC-----HHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHCCh-----HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999876655554 35667777777777765 799999999999995 48
Q ss_pred hHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 369 EKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 369 ~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.+|+|.++++||.+|.|+|+||+.+|++++.+.
T Consensus 161 ~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 161 IDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence 999999999999999999999999999988754
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.1e-17 Score=167.03 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHhhcccCCCCc--c--hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC----hh-HHH
Q 014350 152 YGRMSKILKELHKSCQREDGTD--D--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH----PR-IMG 222 (426)
Q Consensus 152 ~~~A~~ll~el~~~~~~~~~~~--d--~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~----p~-~~~ 222 (426)
.++|+.++.+.=..|-..-+.+ + ..++...+-+.....++|++.++..-++.+++...... .+++ |. -+.
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~-~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKS-MLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHC-CCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC-CCcChhhCCccceE
Confidence 4678888888888776421111 1 11345556666666799999999999999887654432 1211 33 345
Q ss_pred HHHHhhHHHhHHhhcHHHHHHHHHHHHhh-hhhh-----cchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccH
Q 014350 223 IIRECGGKMHMAERQWADAATDFFEAFKN-YDEA-----GNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEIL 296 (426)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~-~~~~-----~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~ 296 (426)
.+..|.|++++.+++|.+|..+|.+||.. +... .......+++|++.+.||.+.- |-.+...+++ +|.+.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~--P~~~ll~k~~--~~~L~ 296 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM--VKWGPLRPFL--SQETI 296 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC--BCHHHHGGGS--CHHHH
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC--CCHHHHcccc--hHHHH
Confidence 78899999999999999999999999998 5432 2346678999999999998653 2111112223 26666
Q ss_pred H-HHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHH----HHHHHHhcccc--ccccchhHHhHhC---
Q 014350 297 A-MTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVR----TQVLLKLIKPY--TRIRIPFISKELN--- 366 (426)
Q Consensus 297 ~-l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~----~~~l~~i~~pY--s~I~l~~iA~~l~--- 366 (426)
+ +..|++|+.+||+..|.+.+++++..|..+..+---+..++..+. .+.+..++.+| ++|+++.++..++
T Consensus 297 ~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~ 376 (455)
T 3t5v_B 297 DNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSI 376 (455)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhcc
Confidence 6 889999999999999999999999988888763323333333333 33333346778 8999999999987
Q ss_pred ------------------CChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 367 ------------------VPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 367 ------------------l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
++.+|+|.++++||.+|.|+|+||+.+|+|++.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 377 GPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred CccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 57899999999999999999999999999999776
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.70 E-value=5.1e-18 Score=131.48 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 332 NYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 332 ~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.||..|.+++.+||++.+++||++|++++||++|++|++++|++|++||.+|+|+|+|||++|+|+|.++..
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 367889999999999999999999999999999999999999999999999999999999999999977543
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.28 E-value=3.2e-09 Score=103.72 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=181.4
Q ss_pred ccchhhHhHHHHhhcccC-CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh
Q 014350 11 DEFTVSRVLCSILEKGLV-ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (426)
Q Consensus 11 ~~~~~~~~~~~~~ak~~~-~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~ 89 (426)
|.+.......+..|..+. .+++++|++.|++.++..+++......++..++.++...|+++++.+++.+.+...+....
T Consensus 3 ~~~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 3 GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 344555566666666544 4689999999999999887666666789999999999999999999999999888633223
Q ss_pred hhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhcc------------------
Q 014350 90 RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE------------------ 151 (426)
Q Consensus 90 k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~------------------ 151 (426)
..........+...+....+ .+.....++.+++......+......+...+|.++...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 34445555555555544333 5667777777777665554555556788899999999999
Q ss_pred --HHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhH
Q 014350 152 --YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGG 229 (426)
Q Consensus 152 --~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g 229 (426)
+++|.+.+.+......... + .......+.....++...|++.+|...++++..+.....++...+..+...|
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---C---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9999999998887755431 2 1445667777788999999999999999999887776666666677788889
Q ss_pred HHhHHhhcHHHHHHHHHHHHhhhhhhcc
Q 014350 230 KMHMAERQWADAATDFFEAFKNYDEAGN 257 (426)
Q Consensus 230 ~~~~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (426)
.++...++|.+|..+|.++.......++
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999876655444
No 11
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=4.9e-09 Score=98.92 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=174.2
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
.+..|... ..+++++|++.|++.++..+++..+...++..++.++...|+++++.+++.+.+...+..........+..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33344443 45689999999999999887666666889999999999999999999999999888633323444455555
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhcc--------------------HHHHHHH
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE--------------------YGRMSKI 158 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~--------------------~~~A~~l 158 (426)
.+...+....+ .+.....++.+++......+......+...+|.++...|+ +++|.+.
T Consensus 88 ~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 88 NLGNTLKVLGN--FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC--HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55555544333 5667777777777666554555556778899999999999 9999999
Q ss_pred HHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcH
Q 014350 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (426)
Q Consensus 159 l~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y 238 (426)
+.+......... + .......+.....++...|++.+|...++++........++...+......|.++...++|
T Consensus 166 ~~~a~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 166 YEENLSLVTALG---D---RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHHHHHHHT---C---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhcC---C---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 988877654321 2 1445667777788999999999999999999777665556666677778888999999999
Q ss_pred HHHHHHHHHHHhhhhhhcc
Q 014350 239 ADAATDFFEAFKNYDEAGN 257 (426)
Q Consensus 239 ~~A~~~f~ea~~~~~~~~~ 257 (426)
.+|..+|.++.......++
T Consensus 240 ~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 9999999999876655444
No 12
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.22 E-value=8.4e-09 Score=101.63 Aligned_cols=230 Identities=17% Similarity=0.090 Sum_probs=175.1
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
.+..|..+ ..+++++|++.|++.++..+++......++..++.+|...|+++++.+++...+...+..........+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444443 45689999999999999887666666789999999999999999999999999888633333444555555
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhcc-----------------HHHHHHHHHH
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE-----------------YGRMSKILKE 161 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~-----------------~~~A~~ll~e 161 (426)
.+...+....+ .+.....++.+++......+......+...+|.++...|+ +++|.+.+++
T Consensus 131 ~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 131 NLGNTLKVMGR--FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66555554333 5667777777777666555555666788899999999999 9999999998
Q ss_pred HHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHH
Q 014350 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADA 241 (426)
Q Consensus 162 l~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A 241 (426)
......... + .......+.....++...|++.+|...++++..+.....++...+..+...|.++...++|.+|
T Consensus 209 al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 209 NLKLMRDLG---D---RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp HHHHHHHHT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcC---C---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHH
Confidence 877654321 1 1345567777788999999999999999999777665556666666777888999999999999
Q ss_pred HHHHHHHHhhhhhhcc
Q 014350 242 ATDFFEAFKNYDEAGN 257 (426)
Q Consensus 242 ~~~f~ea~~~~~~~~~ 257 (426)
..+|.++.......++
T Consensus 283 ~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 283 AEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999876655443
No 13
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=1.7e-08 Score=99.21 Aligned_cols=211 Identities=10% Similarity=-0.009 Sum_probs=158.9
Q ss_pred CCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~ 103 (426)
..+++++|++.|++.++.-+ ++......++..++.+|...|+++++.+++.+.+... +..+ ....+.+...+...
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-KEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCSTTHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHH
Confidence 45789999999999988643 2344468899999999999999999999999999998 4432 45566666667666
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
+....+ .+...+.++.+++......+......+..++|.+|...|++++|.+.+++......... +. .....
T Consensus 194 ~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~---~~---~~~~~ 265 (383)
T 3ulq_A 194 FLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN---IL---PSLPQ 265 (383)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CG---GGHHH
T ss_pred HHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc---cc---hhHHH
Confidence 665343 67788888888887666656666668888999999999999999999999988754321 10 22467
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhc---HHHHHHHHHHH
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ---WADAATDFFEA 248 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~---y~~A~~~f~ea 248 (426)
.+.....++...|++.+|...++++..+.....+|.....+.. .|.++...++ +.+|...|...
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 7777888999999999999999999887766666665555333 5556666666 55555554443
No 14
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.15 E-value=7.8e-09 Score=97.51 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=56.8
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.+...+|.++...|++++|.+.+++......... + .......+.....++...|++.+|...++++........
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc---c---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 4445566666666666666666655555433211 1 122344444445555666666666666665544443333
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
++..........|.++...+++.+|..+|.++...+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 333344444455555556666666666666555433
No 15
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.15 E-value=1.9e-08 Score=98.19 Aligned_cols=222 Identities=16% Similarity=0.066 Sum_probs=149.9
Q ss_pred CCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhhh
Q 014350 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKS 86 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~--------------------~~~l~e~~~~l~~~~~~ 86 (426)
.+++++|++.|++.++..+ .+......++..++.+|...|+ ++++.+++...+...+.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666665443 1223345566666667777776 66666666666665422
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 87 ~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
.............+...+.... +.+.....++.+++......+......+...+|.++...|++++|...+++.....
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT--BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2222333334444443333222 24556666666666554443444445677899999999999999999999988776
Q ss_pred ccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHH
Q 014350 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (426)
Q Consensus 167 ~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ 246 (426)
.... + .......+.....++...|++.+|...++++..+.....++..........|.++...++|.+|..+|.
T Consensus 258 ~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 258 RQLK---D---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhCc---C---chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5431 2 144566777778899999999999999999988777666666666777788899999999999999999
Q ss_pred HHHhhhhhhcch
Q 014350 247 EAFKNYDEAGNQ 258 (426)
Q Consensus 247 ea~~~~~~~~~~ 258 (426)
++.......+++
T Consensus 332 ~al~~~~~~~~~ 343 (406)
T 3sf4_A 332 KHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhcCC
Confidence 998877665543
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.09 E-value=2e-08 Score=98.98 Aligned_cols=221 Identities=13% Similarity=0.022 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHhhhhhhh
Q 014350 30 TDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGK-----------------YKEMMDAYREMLTYIKSAVTR 90 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~-----------------~~~l~e~~~~l~~~~~~~~~k 90 (426)
+++++|++.|++.++..+ .+......++..++.+|...|+ ++++.+++...+...+.....
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555554322 1222344555556666666666 566666555555544111112
Q ss_pred hHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCC
Q 014350 91 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 170 (426)
Q Consensus 91 ~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~ 170 (426)
.........+...+....+ .+.....++.+++......+......+...+|.++...|++++|...+++.........
T Consensus 220 ~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGD--FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 2222333333333332222 44556666666655444333334445677889999999999999988888877754321
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 171 ~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+ .......+.....++...|++.+|...++++..+.....++..........|.++...++|.+|..+|.++..
T Consensus 298 ---~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 298 ---E---REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp ---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---C---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 1344666677778888999999999999888776655555555566667778888889999999999999887
Q ss_pred hhhhhcch
Q 014350 251 NYDEAGNQ 258 (426)
Q Consensus 251 ~~~~~~~~ 258 (426)
.+...+++
T Consensus 372 ~~~~~~~~ 379 (411)
T 4a1s_A 372 LAXXXXXX 379 (411)
T ss_dssp HCCHHHHH
T ss_pred HHhhcccc
Confidence 76655544
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=6.5e-08 Score=95.06 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=142.4
Q ss_pred CCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDF 103 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~ 103 (426)
..+++++|++.|++.++..+ .+......++..++.+|...|+++++.+++.+.+... +... ....+.+...+...
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHH
Confidence 46789999999999988654 3345578899999999999999999999999999987 4322 34566677777776
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
+....+ .+...+.++.+++..+..++......+..+||.+|...|++++|.+.+++........ .+ .....
T Consensus 192 y~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~----~~~~~ 262 (378)
T 3q15_A 192 YDDFKH--YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP----DLLPK 262 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG----GGHHH
T ss_pred HHHhCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC----hhHHH
Confidence 665444 6778888888888776655556666788899999999999999999999998865432 12 22267
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~ 220 (426)
.+.....++...|++.+|...++++..+.....+|..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 7777889999999999999999999877655444433
No 18
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=8.4e-08 Score=91.85 Aligned_cols=212 Identities=7% Similarity=-0.019 Sum_probs=148.9
Q ss_pred CCCHHHHHHHHHHHhcCCc-------cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEP-------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~-------~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il 101 (426)
.+++++|.+++++..+..+ .+.+.....+.+++.+|...|+|+++.+++.+.+............+....++.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777777776654221 122334567778889999999999999999999888723333445566777777
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhH
Q 014350 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l 181 (426)
..+....+ .+.....++.+++......+.........++|.+|.. |++++|.+.+++......... + ....
T Consensus 84 ~~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~---~---~~~~ 154 (307)
T 2ifu_A 84 MMLKDLQR--MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE---R---LRQA 154 (307)
T ss_dssp HHHHHTTC--GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT---C---HHHH
T ss_pred HHHHhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC---C---hhHH
Confidence 66654333 5566777777777654433333445677899999998 999999999998887754321 1 1344
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 182 ~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
...+.....++...|++.+|...++++..+......+...+......|.++...++|.+|..+|..+.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56777777889999999999999999877665444433444556667778888889998888887765
No 19
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.05 E-value=8.5e-10 Score=96.63 Aligned_cols=126 Identities=15% Similarity=0.257 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCc----ccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHH
Q 014350 263 CLKYLVLANMLMESEVNPFDG----QEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLL 338 (426)
Q Consensus 263 ~lky~~L~~lL~~~~~~~~~s----~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~ 338 (426)
.+.-+++.++.+++ +..|+. +.+.... +++..|+.+|++.|..|++..|...-.. + |-+. +.+.
T Consensus 25 ~a~~li~~Al~~p~-vf~F~eLL~~p~v~~L~-~~~~~~~~~LL~iF~~G~~~~y~~~~~~----~---p~L~---~~~~ 92 (169)
T 3chm_A 25 ALGPLIIEATSHPS-LFAFSEILALPNVAQLE-GTTDSVYLDLLRLFAHGTWGDYKCNATR----L---PHLS---PDQI 92 (169)
T ss_dssp GHHHHHHHHHHCTT-CCCCHHHHTCHHHHTTT-TSTTHHHHHHHHHHHHCCHHHHHHHGGG----S---CCCC---HHHH
T ss_pred HHHHHHHHHhcCCC-eeehHHHhCChHHHHhc-CCChhHHHHHHHHHhcCCHHHHHHhHHh----C---cchH---HHHH
Confidence 45567777776644 333432 2222222 3557899999999999999999874221 1 3333 6788
Q ss_pred HHHHHHHHHHhccccccccchhHHhHhCCC-hHHHHHHHH-HhHHcCceeEEEecCCCEEEEec
Q 014350 339 KNVRTQVLLKLIKPYTRIRIPFISKELNVP-EKDVEQLLV-SLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 339 ~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~-~~evE~~l~-~lI~~g~i~akID~~~g~v~~~~ 400 (426)
+++|...++.++.-.+.|+++.|++.++++ +++||.+++ ++|..|.|.|+|||.+++|+++.
T Consensus 93 ~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 93 LKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 999999999999889999999999999999 999999999 99999999999999999999986
No 20
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=5.4e-08 Score=89.63 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=153.7
Q ss_pred CCCCHHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIM 101 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il 101 (426)
..+++++|++.|++.++.-. .+......++..++.+|...|+++++.+++...+...+.. ........+...+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34567788888887776422 1224468899999999999999999999999998886222 12345556666666
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHhhh--hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 014350 102 DFVSGSASQNFSLLREFYQTTLKALEEAK--NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~ 179 (426)
..+....+ .+.....++.+++..+... +..........+|.++...|++++|.+.+++....+....+.++ .
T Consensus 93 ~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~ 166 (283)
T 3edt_B 93 VLYGKRGK--YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD----P 166 (283)
T ss_dssp HHHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC----H
T ss_pred HHHHHhcc--HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----H
Confidence 66655333 6667777777777654432 22345577789999999999999999999999887443222112 3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--C-----------------------------------------C
Q 014350 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--I-----------------------------------------P 216 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~--~-----------------------------------------~ 216 (426)
.....+....+++...|++.+|...++++...... . .
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 35667777788999999999999999988654211 0 0
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+......+...|.++...++|.+|...|..+.+.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122344566788888999999999998887653
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.98 E-value=2e-07 Score=87.34 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=154.7
Q ss_pred CCCCHHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIM 101 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~--~~k~~~~k~v~~il 101 (426)
..+++++|++.|++.++... .+......++..++.+|...|+++++.+++...+...+.. ............+.
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 35689999999999987522 1234467889999999999999999999999998886222 12344455566666
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHhh--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 014350 102 DFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~ 179 (426)
..+....+ .+...+.++.+++..+.. .+..........+|.++...|++++|.+++++.........+.++ .
T Consensus 119 ~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~ 192 (311)
T 3nf1_A 119 VLYGKRGK--YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD----P 192 (311)
T ss_dssp HHHHTTTC--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC----H
T ss_pred HHHHHcCc--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC----H
Confidence 66554333 566677777776654433 223345567789999999999999999999999887544322212 3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-------------------------------------------C
Q 014350 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-------------------------------------------P 216 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~-------------------------------------------~ 216 (426)
.....+...++++...|++.+|...++++....... .
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 272 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC
Confidence 456677777889999999999999999886542110 0
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
........+...|.++...++|.+|..+|..++..
T Consensus 273 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 273 DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11123345566788888999999999999888653
No 22
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=7.4e-07 Score=84.55 Aligned_cols=235 Identities=10% Similarity=0.027 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhH
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~ 135 (426)
.+.+.+.+|...|+|+++.+.|.+.+............+....++...+....+ .+.....++.+++.....++...-
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--SVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344445556666666666666666655541111222334444445444443222 344444555544433222222222
Q ss_pred HHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 136 FKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 136 ~r~~~~La~~~~~~-g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
.....++|.+|... |++++|.+.+++......... + .....+++.....++...|++.+|...++++..+...
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~---~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ---S---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC---C---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 34567999999996 999999999999988754321 1 1233566777778999999999999999999776544
Q ss_pred CCChh-HHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCc
Q 014350 215 IPHPR-IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDP 293 (426)
Q Consensus 215 ~~~p~-~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~ 293 (426)
..... .....+...|.++...++|.+|..+|..+....+..... .
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~----------------------------------~ 236 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS----------------------------------R 236 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc----------------------------------H
Confidence 33221 233455667888889999999998887764321110000 0
Q ss_pred ccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHH
Q 014350 294 EILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRN 332 (426)
Q Consensus 294 ~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~ 332 (426)
+...+..|..++..++...|...+..|...+..||....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 112334455555556666677777777666667775533
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=4.9e-07 Score=85.84 Aligned_cols=194 Identities=9% Similarity=0.033 Sum_probs=137.8
Q ss_pred hhhHhHHHHhhccc--CCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh-
Q 014350 14 TVSRVLCSILEKGL--VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV- 88 (426)
Q Consensus 14 ~~~~~~~~~~ak~~--~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~- 88 (426)
--+++..|..|=.+ ..+++++|++.|.+.++..+ .+......++.+++.+|...|+++++.++|.+.+... +..
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g 111 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRG 111 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcC
Confidence 44555666555332 35789999999999988654 2333457899999999999999999999999999987 443
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 89 TRNYSEKCINNIMDFVSGS-ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 89 ~k~~~~k~v~~il~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
.....+....++...+... .+ .+.....++.+++......+......+..++|.++...|+|++|.+.+++......
T Consensus 112 ~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 112 QFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 3334566677777777652 33 66778888888876443222223346678999999999999999999999988754
Q ss_pred cCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014350 168 REDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (426)
Q Consensus 168 ~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~ 215 (426)
... .. .....+.+.....++...|++..|...++++..+.+..
T Consensus 190 ~~~---~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 190 GNR---LS--QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp SCT---TT--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred cCC---cc--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 321 10 01233455666678889999999999999987665543
No 24
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.82 E-value=8.7e-07 Score=86.91 Aligned_cols=208 Identities=9% Similarity=-0.005 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhh-h
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-E 132 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~ 132 (426)
...+-..|..++..|+++++.+++.+.+...+........+.+...+...+....+ .+.....++.+++......+ .
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~--~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ--THVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHhCCCch
Confidence 33455578899999999999999999998873323345566666677666655343 66777888888876655433 3
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+...+|.++...|+|++|.+.+.+......... +. .....++.....++...|++.+|...++++..+.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~---~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ---ND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34557788999999999999999999999888765431 21 4456677777889999999999999999997766
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~l 272 (426)
....+|.. .......|.++...++|.+|..+|.++.......+++..... +..+..+
T Consensus 253 ~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~l 309 (378)
T 3q15_A 253 REKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAV 309 (378)
T ss_dssp HHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHH
T ss_pred HhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Confidence 55455655 666677889999999999999999999887666566554432 3444444
No 25
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.79 E-value=1.9e-06 Score=84.44 Aligned_cols=204 Identities=7% Similarity=0.024 Sum_probs=153.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhh-hhhHHH
Q 014350 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERLWFK 137 (426)
Q Consensus 59 ~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~kl~~r 137 (426)
..|.++...|+++++.+++.+.+...+........+.+...+...+....+ .+.....++.+++......+ ......
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ--TYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 378999999999999999999998862222334456666666666655333 66778888888887665544 344557
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
+...+|.+|...|+|++|.+.+.+......... +. ......+.....++...|++.+|...++++..+.....+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---QP---QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---Ch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 788999999999999999999999988765431 21 445667777788999999999999999999887666555
Q ss_pred -hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHh
Q 014350 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (426)
Q Consensus 218 -p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L~~lL 273 (426)
|.. +......|.++...++|.+|..+|.++.......+++..... +..++.+.
T Consensus 260 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~ 313 (383)
T 3ulq_A 260 LPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLY 313 (383)
T ss_dssp GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH
T ss_pred chhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 443 556677788999999999999999999887666666544333 34455554
No 26
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=3.7e-06 Score=73.77 Aligned_cols=182 Identities=10% Similarity=0.041 Sum_probs=136.7
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
+..+++++|++.++.+.. ++ .....++..++.++...|+++++.+++...+... ...
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~------------------ 59 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKS------------------ 59 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTT------------------
T ss_pred cccccHHHHHHHHHHhcC-Ch---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHc------------------
Confidence 456789999996555533 22 2347889999999999999999999999988876 221
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
.+ . .....+...+|.++...|++++|.+.+.+........+ ++. ......+.
T Consensus 60 -~~--~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~---~~~~~~~~ 111 (203)
T 3gw4_A 60 -GD--H--------------------TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP--EDP---LAASANAY 111 (203)
T ss_dssp -CC--H--------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCH---HHHHHHHH
T ss_pred -CC--c--------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ccH---HHHHHHHH
Confidence 11 0 00112356899999999999999999999888765331 121 24566677
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchh
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~ 259 (426)
....++...|++.+|...++++........++...+......|.++...++|.+|..+|.++...+...+++.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 7788999999999999999999877666667776677777889999999999999999999998877767653
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=9.5e-06 Score=73.50 Aligned_cols=200 Identities=13% Similarity=0.101 Sum_probs=137.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHhc
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVS 105 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~--k~~~~k~v~~il~~~~ 105 (426)
..+++++|++.|.+.++.+ .+ ..++..++.++...|+++++.+++...+... +... ..........+...+.
T Consensus 17 ~~~~~~~A~~~~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHHHHHHHHHH
Confidence 3568999999999999876 33 5688999999999999999999999998876 4431 1111334444444443
Q ss_pred CCCCCChhHHHHHHHHHHH-------------------HHHhhh-hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 106 GSASQNFSLLREFYQTTLK-------------------ALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~-------------------~l~~~~-~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
...+ .+...+.++.+++ .++... ...........+|.++...|++++|.+.+++....
T Consensus 91 ~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 91 KLGD--LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HTTC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hccc--HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3222 3344444444433 111110 11122255678999999999999999999999887
Q ss_pred cccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHH
Q 014350 166 CQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 245 (426)
Q Consensus 166 ~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f 245 (426)
... + ...+.....++...|++.+|...++++....+. + ...+...|.++...+++.+|..+|
T Consensus 169 ~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 169 APE-----D-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--F----VRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Ccc-----c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--H----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 421 1 245556667888999999999999988665322 1 234556678888999999999999
Q ss_pred HHHHhhhh
Q 014350 246 FEAFKNYD 253 (426)
Q Consensus 246 ~ea~~~~~ 253 (426)
..+.....
T Consensus 231 ~~a~~~~~ 238 (258)
T 3uq3_A 231 DAARTKDA 238 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCh
Confidence 99876543
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.74 E-value=7.6e-06 Score=76.36 Aligned_cols=196 Identities=13% Similarity=0.138 Sum_probs=141.9
Q ss_pred hhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 014350 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (426)
Q Consensus 51 ~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~ 128 (426)
.....++..++.++...|+++++.+++...+...+... .......+...+...+....+ .+.....++.+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKDAANLLNDALAIREK 101 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999998862222 234445555555555544333 56667777777765544
Q ss_pred h--hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 014350 129 A--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (426)
Q Consensus 129 ~--~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~ 206 (426)
. .+..........+|.++...|++++|.+.+++.........+.++ ......+.....++...|++.+|...++
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH----PDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 233445567789999999999999999999998887532111111 3356677777889999999999999999
Q ss_pred HHHhhhccCC--ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 207 KALAIKSAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 207 ~a~~i~~~~~--~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
++........ ++......+...|.++...++|.+|...|.++....
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9876644332 222334566677888999999999999999998654
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=3.9e-06 Score=79.36 Aligned_cols=198 Identities=11% Similarity=0.042 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~-~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 131 (426)
....+.+.+..+...|+++++.+.+....... +..+... .......+...+.... +.+.....++.+++......+
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSC
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhccccc
Confidence 35566667888999999999999999987754 3222211 1223333444444322 255666666666552111122
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
......+...+|.+|...|+|++|.+++++........++ + ......++.....++...|++.+|..+++++..+
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--c---hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2233467789999999999999999999999876543321 2 2556778888889999999999999999999877
Q ss_pred hccCCChhHHHHHHHhhHHHhHHhh-cHHHHHHHHHHHHhhhhhhcch
Q 014350 212 KSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFKNYDEAGNQ 258 (426)
Q Consensus 212 ~~~~~~p~~~~~i~~~~g~~~~~~~-~y~~A~~~f~ea~~~~~~~~~~ 258 (426)
.....+....+..+...|.++...+ +|.+|..+|..+..-+...++.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7655555556778888899999988 5799999999998777665554
No 30
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=4.2e-06 Score=79.86 Aligned_cols=190 Identities=8% Similarity=0.034 Sum_probs=138.0
Q ss_pred hHhHHHHhhcc-c-CCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh
Q 014350 16 SRVLCSILEKG-L-VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (426)
Q Consensus 16 ~~~~~~~~ak~-~-~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~ 91 (426)
.++..|..|=. . ..+++++|++.|.+.++..+ .+......++.+++.+|...|+++++.++|.+.+..........
T Consensus 34 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34444444322 2 24678999999998887654 23334578999999999999999999999999998872222334
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCC
Q 014350 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (426)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~ 171 (426)
..+....++...+.. . +.+...+.++.+++......+......+..++|.++...|+|++|.+.+++.........
T Consensus 114 ~~a~~~~~lg~~~~~-g--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~- 189 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-L--DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME- 189 (307)
T ss_dssp HHHHHHHHHHHHHTT-T--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHc-C--CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-
Confidence 456777778777765 3 377788888888886554333334457788999999999999999999999988754321
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 014350 172 TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (426)
Q Consensus 172 ~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~ 215 (426)
+ .......++....++...|++.+|...++++. ..+..
T Consensus 190 --~---~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 190 --N---YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp --C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred --C---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 1 12334566666778888999999999999987 55443
No 31
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.64 E-value=5.2e-06 Score=69.10 Aligned_cols=157 Identities=15% Similarity=0.026 Sum_probs=121.4
Q ss_pred hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhh
Q 014350 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (426)
Q Consensus 50 ~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 129 (426)
......++..++.++...|+++++.+++...+... +.. ++ .
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~~--~----------------- 45 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEF-------------------GD--K----------------- 45 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHH-------------------TC--H-----------------
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHh-------------------CC--c-----------------
Confidence 34567889999999999999999999999988775 221 11 0
Q ss_pred hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014350 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 130 ~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~ 209 (426)
.....+...+|.++...|++++|.+.+.+......... +. .....++.....++...|++.+|...++++.
T Consensus 46 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 46 ---AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK---DR---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC---Cc---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01112356899999999999999999999888765431 21 3446667777889999999999999999997
Q ss_pred hhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 210 ~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
.......++...+......|.++...+++.+|..+|.++...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 117 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 776666666666677778889999999999999999998765543
No 32
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=1.4e-06 Score=82.47 Aligned_cols=185 Identities=11% Similarity=0.064 Sum_probs=137.5
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhh--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEW--GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~--~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
+.++++++|++.++++++..+..... ....+..++.++...|+++++.+++.+.+..............+...+...+
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 45678999999999998866532221 2345566899999999999999999999986412222233445566776666
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhh-hhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 105 SGSASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~~-~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
....+ .+.....++.+++.++.. .+......+..++|.+|...|+|++|.+.+++......... + ......
T Consensus 166 ~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~---~---~~~~~~ 237 (293)
T 3u3w_A 166 AENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN---S---MALIGQ 237 (293)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---B---CTTHHH
T ss_pred HHcCC--HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC---c---HHHHHH
Confidence 55333 678888889888877765 34556678889999999999999999999999988765431 2 144577
Q ss_pred HHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccCCChh
Q 014350 184 VYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPR 219 (426)
Q Consensus 184 ~~l~e~rl~~~~~-d~~kak~~l~~a~~i~~~~~~p~ 219 (426)
++.....++...| ++.+|...+++|..+.....++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~ 274 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTG
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 8888888999999 57999999999977765554443
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.64 E-value=2.2e-06 Score=74.54 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
++++++|++.|+++++.+|++ ..++..++.+|.+.|+++++.+.+....... |
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-----------------------~ 70 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNN----VETLLKLGKTYMDIGLPNDAIESLKKFVVLD-----------------------T 70 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------C
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------c
Confidence 467888888888888777654 4567777888888888888877776665543 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ . ......+|.++...|++++|.+.+.+....... -.+.+...
T Consensus 71 ~--~-----------------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------------~~~~~~~l 113 (184)
T 3vtx_A 71 T--S-----------------------AEAYYILGSANFMIDEKQAAIDALQRAIALNTV------------YADAYYKL 113 (184)
T ss_dssp C--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred h--h-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHH
Confidence 2 0 011345677777888888888888887766321 12344455
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..++...|++.+|...++++..+.+. + ...+...|.++...++|.+|..+|..+.+
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIKPG--F----IRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhcch--h----hhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66788888888888888887665422 1 22445567778888888888888888865
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.62 E-value=2.7e-06 Score=82.29 Aligned_cols=197 Identities=12% Similarity=0.080 Sum_probs=114.1
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh------------h---hHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT------------R---NYS 93 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~------------k---~~~ 93 (426)
.+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++.+.+... +... . ...
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHH
Confidence 456778888888777766543 4556677777777777777777777766653 3211 1 111
Q ss_pred HHHHHHHHHHhcCCCC----------------------CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhcc
Q 014350 94 EKCINNIMDFVSGSAS----------------------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE 151 (426)
Q Consensus 94 ~k~v~~il~~~~~~~~----------------------~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~ 151 (426)
.+..+.++..-+..+. .+.+.....++.+++ ...+ .....+...+|.++...|+
T Consensus 153 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~-~~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH---QNGD-MIDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH---HSCS-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH---hCcC-ccCHHHHHHHHHHHHHCCC
Confidence 1122222221111000 001122222222222 1111 0123445678888888888
Q ss_pred HHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHH
Q 014350 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (426)
Q Consensus 152 ~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~ 231 (426)
+++|.+.+++....... + ...+.....++...|++.+|...++++....+.. ...+...|.+
T Consensus 229 ~~~A~~~~~~al~~~p~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~ 290 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPE-----D-------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHH
Confidence 88888888888776421 1 2344555667888888888888888876653211 2344556777
Q ss_pred hHHhhcHHHHHHHHHHHHhhh
Q 014350 232 HMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 232 ~~~~~~y~~A~~~f~ea~~~~ 252 (426)
+...++|.+|..+|..+....
T Consensus 291 ~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC
Confidence 778888888888888887644
No 35
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=5.5e-06 Score=78.29 Aligned_cols=199 Identities=11% Similarity=0.028 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~-k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...+...+..+...|+++++.+.+...++.. +... ..........+...+....+ .+...+.++.+++......+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVD--YEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhcCCch
Confidence 4455667888999999999999999887764 2211 11112222233333333222 445555555544422111122
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+...+|.+|...|+|++|.+.+++........++ +. .....++.....++...|++.+|..+++++..+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--cc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 223567789999999999999999999999865433221 21 2234677788889999999999999999997776
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHH-HHHHHHHHhhhhhhcchhH
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAGNQRR 260 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A-~~~f~ea~~~~~~~~~~~~ 260 (426)
....++...+..+...|.++...++|.+| ..+|..+..-+...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 54444555677788889999999999999 7778888776665565543
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.60 E-value=5.3e-06 Score=74.95 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|+..|++.++.+|++ ..++..++.++.+.|+++++.+.+.+.+... |........... .........
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~-~~~~~~~~~ 90 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKENPQD----PEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE-AYVALYRQA 90 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-HHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH-HHHHhhhhh
Confidence 3568999999999999998865 5678899999999999999999999999886 543222211111 000000000
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhh-hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~-~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
.. ......-++.+++.++.+.. .--.......+|.++...|++++|.+.+++..... . + .+.+.
T Consensus 91 ~~--~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-----~-------~~~~~ 155 (217)
T 2pl2_A 91 ED--RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-----T-------PEIRS 155 (217)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-----C-------HHHHH
T ss_pred hh--hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-----c-------hHHHH
Confidence 00 00111222333333332110 11122445688999999999999999999988773 1 1 23445
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
....++...|++..|...++++....+. ++ ..+...|.++...+++.+|...|..+
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK--DL----DLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5567888999999999999888665422 12 23344567777888998888877665
No 37
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.60 E-value=1e-05 Score=74.76 Aligned_cols=187 Identities=10% Similarity=0.111 Sum_probs=126.7
Q ss_pred hHHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014350 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (426)
Q Consensus 18 ~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (426)
...|..|..+ ..+++++|++.|+++++..+++ .+...++..++.+|+..|+|+++.+.+..++... |.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~--------- 84 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QI--------- 84 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CC---------
Confidence 3455566554 3568999999999999988743 3457899999999999999999999999988875 32
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH--------hccHHHHHHHHHHHHhhccc
Q 014350 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD--------MGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~--------~g~~~~A~~ll~el~~~~~~ 168 (426)
.|. . . .....+|..+.. .|++++|...++++.....+
T Consensus 85 ----------~~~--~---~--------------------~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 85 ----------DPR--V---P--------------------QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp ----------CTT--H---H--------------------HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred ----------Cch--h---H--------------------HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 111 0 0 124577888888 99999999999999887543
Q ss_pred CCCCcchh-----hhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHh--------
Q 014350 169 EDGTDDQK-----KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE-------- 235 (426)
Q Consensus 169 ~~~~~d~~-----~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~-------- 235 (426)
.....+.. ......+......+++...|++.+|...++++....+... .........|..+...
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~ 206 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRAR 206 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhc
Confidence 21000000 0000011115556789999999999999998866533211 1122333444555433
Q ss_pred --hcHHHHHHHHHHHHhhhh
Q 014350 236 --RQWADAATDFFEAFKNYD 253 (426)
Q Consensus 236 --~~y~~A~~~f~ea~~~~~ 253 (426)
++|.+|...|..+...+.
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHHCC
Confidence 999999999999987664
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.59 E-value=1.3e-05 Score=75.33 Aligned_cols=193 Identities=12% Similarity=0.025 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (426)
++++|++.|++.++.++++ ..++..++.++...|+++++.+.+...+... +........ +...+....+
T Consensus 106 ~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~-----l~~~~~~~~~- 174 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLY-----IGLEYGLTNN- 174 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHH-----HHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHH-----HHHHHHHHhh-
Confidence 5667777777776665543 2345667777777777777777777776665 332111111 2222221111
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r 190 (426)
.+...+.++.+++. . .-.......+|.++...|++++|...+++.........+... .....+.+.....
T Consensus 175 -~~~A~~~~~~al~~---~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~la~ 244 (330)
T 3hym_B 175 -SKLAERFFSQALSI---A---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---VDKWEPLLNNLGH 244 (330)
T ss_dssp -HHHHHHHHHHHHTT---C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---TTTCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh---C---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---ccHHHHHHHHHHH
Confidence 33344444433321 1 111245668999999999999999999999887643221111 0122356666778
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
++...|++.+|...++++....+. ++ ..+...|.++...++|.+|..+|..+..
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQ--NA----STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CS----HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcc--ch----HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 899999999999999998766432 12 2445567888899999999999998865
No 39
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=3.6e-06 Score=79.61 Aligned_cols=185 Identities=9% Similarity=0.025 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccc--hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 014350 28 VETDPEGALAGFAEVVAMEPEK--AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~--~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (426)
.++++++|++.+.+.++..+.. ..........++.++...|+++++.+++...+..............+...+...+.
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5678999999999998876531 22234456678899999999999999999988764122222234556666666665
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhh-hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHH
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~k-l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~ 184 (426)
...+ .+.....++.+++..+...+.. ....+..++|.+|...|+|++|.+.+++........ .+ ......+
T Consensus 167 ~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~---~~~~~~~ 238 (293)
T 2qfc_A 167 ENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQL 238 (293)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CSSHHHH
T ss_pred HcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---Cc---HHHHHHH
Confidence 5333 6778888888887666543332 344778899999999999999999999988876432 12 1445677
Q ss_pred HHHHHHHHHhhcCHHHH-HHHHHHHHhhhccCCChhH
Q 014350 185 YAIEIQMYTETKNNKKL-KQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 185 ~l~e~rl~~~~~d~~ka-k~~l~~a~~i~~~~~~p~~ 220 (426)
+.....++...|++.+| ..++++|..+.....++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 88888899999999999 8889999877665555443
No 40
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.55 E-value=2.6e-05 Score=74.88 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+++++|++.|.++++.++++ ..++..++.++...|+++++.+++...+...
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 128 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELK 128 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 567999999999999887754 4678889999999999999999999988775
No 41
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.52 E-value=2.3e-06 Score=78.88 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=121.8
Q ss_pred HHHhhcCHHHHHHHHHHHHhh---hccCCC---h-h--HHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh-hhhh--hcch
Q 014350 191 MYTETKNNKKLKQLYQKALAI---KSAIPH---P-R--IMGIIRECGGKMHMAERQWADAATDFFEAFK-NYDE--AGNQ 258 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~~i---~~~~~~---p-~--~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~-~~~~--~~~~ 258 (426)
-.+..+|+.++...+.+.+.- .+..++ + . +.-.+++.++++.+..+|..+ +..+..... -|.. .+++
T Consensus 16 ~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~-F~~~~~qLk~~Y~~~~~~s~ 94 (229)
T 4b0z_A 16 DLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIES-FARYASQVIPFYHDSLVPSS 94 (229)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHSSCCCCCT
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHccCCCCc
Confidence 345678999999998876421 122221 1 2 123677888888777666544 333333333 3332 2445
Q ss_pred hHHHHHHHHHHHHHhhCCCCC--C----CCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHH
Q 014350 259 RRIQCLKYLVLANMLMESEVN--P----FDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRN 332 (426)
Q Consensus 259 ~~~~~lky~~L~~lL~~~~~~--~----~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~ 332 (426)
....++.|-+|+.++.++..+ . +..... ..++|.+.....|.+++..|++.+|.+...+.. .+...-
T Consensus 95 ~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~--~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~~ 167 (229)
T 4b0z_A 95 RMGLVTGLNLLYLLSENRIAEFHTALESVPDKSL--FERDPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFSY 167 (229)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTH--HHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGHH
T ss_pred cHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHH--hhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHHH
Confidence 667788888888776654211 1 111100 123566777778999999999999998876532 233445
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhHHhHhCC-ChHHHHHHHHH
Q 014350 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEKDVEQLLVS 378 (426)
Q Consensus 333 ~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l-~~~evE~~l~~ 378 (426)
.++.|..++|..++..+.+.|++|+++++++.|++ ++++++..+.+
T Consensus 168 ~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 168 FMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 67889999999999999999999999999999999 58899998887
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.52 E-value=8.4e-05 Score=72.04 Aligned_cols=213 Identities=8% Similarity=-0.053 Sum_probs=145.9
Q ss_pred CCCCHHHHHHHHHHHhcCCcc-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHhc
Q 014350 28 VETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIMDFVS 105 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~-~~~k~v~~il~~~~ 105 (426)
..+++++|++.+++.++..+. +......++..++.++...|+++++.+++...+... +..... ....+...+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHH
Confidence 467899999999999887653 333356788899999999999999999999998886 432222 22222333333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhh--hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~--kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
... +.+.....++.+++........ .........+|.++...|++++|...+.+......... + .....
T Consensus 105 ~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~----~~~~~ 175 (373)
T 1hz4_A 105 AQG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---P----QQQLQ 175 (373)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---G----GGGHH
T ss_pred HCC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---c----HHHHH
Confidence 222 2556667777766654432222 22335567899999999999999999999988765431 2 11345
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh-hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p-~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+....+++...|++.+|...++.+..+......+ ..........+.++...+++.+|...+.++..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 66677789999999999999999987765433322 22222223344557788999999999888754
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.51 E-value=1.5e-05 Score=72.38 Aligned_cols=191 Identities=11% Similarity=0.035 Sum_probs=130.5
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++...+... +... .....+...+...
T Consensus 49 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~la~~~~~~ 118 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEIDPSS----ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNA-----RVLNNYGGFLYEQ 118 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcH-----HHHHHHHHHHHHH
Confidence 3567999999999999877644 4678889999999999999999999998875 4321 2222333333322
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+...+.++.+++ .............+|.++...|++++|.+.+.+....... + .+.+..
T Consensus 119 g~--~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~ 180 (252)
T 2ho1_A 119 KR--YEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-----Q-------PSVALE 180 (252)
T ss_dssp TC--HHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----C-------HHHHHH
T ss_pred hH--HHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-----c-------HHHHHH
Confidence 22 3334444443322 1112223355678999999999999999999998877421 1 244556
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.+.++...|++.+|...++++....+. .+ ......+.++...+++.+|...|..+...+
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGGQ--NA----RSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC--cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 667889999999999999887654321 12 233455667778899999999988886643
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.50 E-value=6e-05 Score=66.55 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC-
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS- 107 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~- 107 (426)
.+++++|++.|+++++..+++ ..++..++.+|...|+++++.+++...+... +... .....+...+...
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~-----~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA-----EINNNYGWFLCGRL 90 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh-----HHHHHHHHHHHHhc
Confidence 568999999999999887654 4578889999999999999999999998875 4321 1223333444332
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+.....++.+++ .............+|.++...|++++|.+.+.+....... ..+.+..
T Consensus 91 ~~--~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~ 152 (225)
T 2vq2_A 91 NR--PAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------------FPPAFKE 152 (225)
T ss_dssp CC--HHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHH
T ss_pred Cc--HHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CchHHHH
Confidence 22 4444454444333 1111122344568888899999999999888888776321 1234555
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~ 249 (426)
.+.++...|++.+|...++++....+. .++. .....+.++...+++..|..++....
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEV-LQAD----DLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHH----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHH----HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567788889999999888887665430 1121 22345566667778877776666554
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.50 E-value=2e-05 Score=74.91 Aligned_cols=196 Identities=9% Similarity=0.077 Sum_probs=137.3
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.++++..+.+ ..++..++.++...|+++++.+.+...+... +... .....+...+...
T Consensus 132 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~la~~~~~~ 201 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNT-----EAFYKISTLYYQL 201 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCH-----HHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHc
Confidence 3568999999999999887654 4678889999999999999999999988775 4322 1222233322221
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHH--------HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~--------r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~ 179 (426)
.+ .+.....++.+++.- ..+...|. .....+|..+...|++++|.+.+++....... +. .
T Consensus 202 ~~--~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~---~ 269 (359)
T 3ieg_A 202 GD--HELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----VA---E 269 (359)
T ss_dssp TC--HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----SH---H
T ss_pred CC--HHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ch---H
Confidence 22 344455555444321 11111111 22457799999999999999999999887532 21 3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.....+.....++...|++.+|...++++....+. ++ ..+...|.++...++|.+|...|..+.+.
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NV----NALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677778999999999999999988665321 12 25566788888999999999999999764
No 46
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.50 E-value=1e-05 Score=77.88 Aligned_cols=194 Identities=12% Similarity=0.154 Sum_probs=134.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHH-------------
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK------------- 95 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k------------- 95 (426)
.+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++...+... +.........
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDN----QTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------
T ss_pred CcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHH
Confidence 568999999999999887654 5678899999999999999999999998876 4432221100
Q ss_pred -HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcc
Q 014350 96 -CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD 174 (426)
Q Consensus 96 -~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d 174 (426)
.+..+. .. . +.+.....++.+++ ...+. ....+...+|.++...|++++|.+.+++....... +
T Consensus 186 ~~~~~~~-~~---~--~~~~A~~~~~~a~~---~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~ 250 (368)
T 1fch_A 186 RILGSLL-SD---S--LFLEVKELFLAAVR---LDPTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-----D 250 (368)
T ss_dssp CTTHHHH-HH---H--HHHHHHHHHHHHHH---HSTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C
T ss_pred HHHHHHh-hc---c--cHHHHHHHHHHHHH---hCcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----C
Confidence 011111 00 0 01222333333222 11110 13345678999999999999999999998887321 1
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 175 ~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
.+.+.....++...|++.+|...++++....+. ++ ..+...|.++...++|.+|..+|..+......
T Consensus 251 -------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 251 -------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YI----RSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 245566677899999999999999998765421 12 34566788888999999999999999876654
Q ss_pred h
Q 014350 255 A 255 (426)
Q Consensus 255 ~ 255 (426)
.
T Consensus 318 ~ 318 (368)
T 1fch_A 318 S 318 (368)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.49 E-value=9.8e-06 Score=72.93 Aligned_cols=196 Identities=10% Similarity=-0.019 Sum_probs=128.6
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
.+..|... ..+++++|++.|+++++.++++ ..++..++.++...|+++++.+++...+... +... ....
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~ 95 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALELD-SSAA-----TAYY 95 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Ccch-----HHHH
Confidence 33444444 3457999999999999877654 5678889999999999999999999998875 4321 2222
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.+...+....+ .+...+.++.+++. .. -.......+|.++...|++++|.+.+++....... +
T Consensus 96 ~la~~~~~~~~--~~~A~~~~~~~~~~---~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~---- 158 (243)
T 2q7f_A 96 GAGNVYVVKEM--YKEAKDMFEKALRA---GM---ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-----D---- 158 (243)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHH---TC---CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-----C----
T ss_pred HHHHHHHHhcc--HHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----c----
Confidence 33333332222 44455555554442 11 11234568899999999999999999998877431 1
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+.+.....++...|++.+|...++++....+. ++ ..+...|.++...+++.+|...|..+...
T Consensus 159 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 159 ---TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HA----DAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp ---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 234556667889999999999999988665321 12 24556678888999999999999998763
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.49 E-value=1.2e-05 Score=73.97 Aligned_cols=123 Identities=11% Similarity=0.146 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|+++++.++++. .++..++.+|...|+++++.+++...+.. +. ...........+...+...
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~-~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSK--VN-ATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SC-TTTCCHHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cC-chhHHHHHHHHHHHHHHHc
Confidence 34567777777777777666432 24566777777777777777777777662 32 1111222223333333322
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
.+ .+...+.++.+++. ..+ ...+...+|.++...|++++|.+.+++....
T Consensus 88 ~~--~~~A~~~~~~a~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 88 GQ--DSLAIQQYQAAVDR---DTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp TC--HHHHHHHHHHHHHH---STT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred cc--HHHHHHHHHHHHhc---Ccc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 22 34444444444441 100 1123345666666666666666655555444
No 49
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.46 E-value=5.6e-05 Score=71.67 Aligned_cols=204 Identities=10% Similarity=0.028 Sum_probs=134.2
Q ss_pred CCCHHHHHHHHHHHhcCCc---cchhhh--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEP---EKAEWG--------FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~---~~~~~~--------~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v 97 (426)
.+++++|++.|++.++.++ ++.... .+....++.++...|+++++.+++...+... +... ...
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~ 157 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA-----ELR 157 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch-----HHH
Confidence 4678999999999998877 332110 1122344899999999999999999998876 4322 223
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchh-
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK- 176 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~- 176 (426)
..+...+....+ .+.....++.+++. . .-.......+|.++...|++++|.+.+++......+. .+..
T Consensus 158 ~~~~~~~~~~~~--~~~A~~~~~~~~~~---~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 226 (359)
T 3ieg_A 158 ELRAECFIKEGE--PRKAISDLKAASKL---K---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFA 226 (359)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHTT---C---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHH
T ss_pred HHHHHHHHHCCC--HHHHHHHHHHHHHh---C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHH
Confidence 333333333222 33444444433331 1 1122456789999999999999999999998874321 0100
Q ss_pred --hhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 177 --KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 177 --~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.....++..+.....+...|++.+|...++++....+. ++......+...|.++...++|.+|...|..+...
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 00001122344467789999999999999988765432 45555566677788999999999999999998764
No 50
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.45 E-value=1.4e-05 Score=77.18 Aligned_cols=200 Identities=8% Similarity=-0.031 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh------------hhHHHHHHHHH
Q 014350 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT------------RNYSEKCINNI 100 (426)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~------------k~~~~k~v~~i 100 (426)
..++..+.......+++.......+..++..+.+.|+++++.+++...+... |... ....++++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (365)
T 4eqf_A 44 QVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVAL 122 (365)
T ss_dssp ---------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455556666555543332234567888999999999999999999998775 4321 11122222222
Q ss_pred HHHhcCCCCC---------------ChhHHHHHHHHHHHHHHhhhhhhhHH------HHhHHHHHHHHHhccHHHHHHHH
Q 014350 101 MDFVSGSASQ---------------NFSLLREFYQTTLKALEEAKNERLWF------KTNLKLCKIWFDMGEYGRMSKIL 159 (426)
Q Consensus 101 l~~~~~~~~~---------------~~~~~~~~~~~~l~~l~~~~~~kl~~------r~~~~La~~~~~~g~~~~A~~ll 159 (426)
-..+...|+. +.+.....++.+++.- ..+...+. .+...++.++...|++++|.+.+
T Consensus 123 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2222222320 1111222222222110 00111111 22345689999999999999999
Q ss_pred HHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHH
Q 014350 160 KELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWA 239 (426)
Q Consensus 160 ~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~ 239 (426)
++........ ...+.+.....++...|++.+|...++++....+. + ...+...|.++...++|.
T Consensus 201 ~~al~~~p~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 201 LEAAHQNGDM----------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--D----YSLWNRLGATLANGDRSE 264 (365)
T ss_dssp HHHHHHSCSS----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcCc----------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHH
Confidence 9998884321 01234556667889999999999999998765422 1 234566788888999999
Q ss_pred HHHHHHHHHHhh
Q 014350 240 DAATDFFEAFKN 251 (426)
Q Consensus 240 ~A~~~f~ea~~~ 251 (426)
+|...|..+...
T Consensus 265 ~A~~~~~~al~~ 276 (365)
T 4eqf_A 265 EAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 51
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.45 E-value=7.9e-05 Score=73.71 Aligned_cols=107 Identities=9% Similarity=0.048 Sum_probs=78.3
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhh------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ------LLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~------l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
.....+|.++...|++++|.+.+++........ .. ... .++........+...|++.+|...++++..
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDH----KR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh----HH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445688999999999999999999998764321 10 000 111223446788999999999999999876
Q ss_pred hhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 211 i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..+. +|......+.+.|.++...++|.+|...|..+...
T Consensus 286 ~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 286 TEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 45555667778889999999999999999988653
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.43 E-value=3.1e-05 Score=69.65 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHhcCCc-cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 28 VETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~-~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
..+++++|++.|.++++.++ .+ ..++..++.++...|+++++.+++...+...
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------------------- 72 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIKKYKEAADYFDIAIKKN---------------------- 72 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------------
T ss_pred HccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----------------------
Confidence 34678889999988888775 33 2455668888888899888888887776543
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
|+ . ......+|.++...|++++|.+.+++....... +..-...+.+.+.
T Consensus 73 -p~--~-----------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~ 121 (228)
T 4i17_A 73 -YN--L-----------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----NATIEKLYAIYYL 121 (228)
T ss_dssp -CS--H-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHH
T ss_pred -cc--h-----------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHH
Confidence 32 0 112568999999999999999999999887542 1111233457778
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
....++...|++.+|...++++...
T Consensus 122 ~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 122 KEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHhHHHHHhccHHHHHHHHHHHHhc
Confidence 8888999999999999999998654
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.41 E-value=2e-05 Score=72.38 Aligned_cols=170 Identities=11% Similarity=0.092 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl 134 (426)
..+...+.+++..|+++++.+++...+... |...... ..+...+....+ .+...+.++.+++ ...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~-----~~l~~~~~~~~~--~~~A~~~~~~a~~---~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIY-----NRRAVCYYELAK--YDLAQKDIETYFS---KVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTH-----HHHHHHHHHTTC--HHHHHHHHHHHHT---TSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHH-----HHHHHHHHHHhh--HHHHHHHHHHHHh---ccCchhH
Confidence 456778999999999999999999998876 5432222 222222222222 5556666666555 2233445
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
.......+|.++...|++++|.+.+.+....... ..+.+.....++...|++.+|...++++....+.
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 4566789999999999999999999999887431 1245566677899999999999999887654211
Q ss_pred CCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 215 ~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
++ ..+...|......++|.+|...|..+.+...
T Consensus 141 --~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 141 --DP----KVFYELGQAYYYNKEYVKADSSFVKVLELKP 173 (272)
T ss_dssp --CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred --cH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 12 2333445222234599999999999987543
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.40 E-value=0.00012 Score=68.66 Aligned_cols=209 Identities=11% Similarity=0.001 Sum_probs=116.1
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh--------
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-------- 90 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k-------- 90 (426)
.+..|..+ ..+++++|++.|+++++.++++ ..++..++.++...|+++++.+++...+... +....
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34444443 3568999999999999877653 4567788999999999999999999888775 43211
Q ss_pred ----hHHHHHHHHHHHHhcCCCCCC-h----------------------hHHHHHHHHHHHHHHhhh-hhhhHHHHhHHH
Q 014350 91 ----NYSEKCINNIMDFVSGSASQN-F----------------------SLLREFYQTTLKALEEAK-NERLWFKTNLKL 142 (426)
Q Consensus 91 ----~~~~k~v~~il~~~~~~~~~~-~----------------------~~~~~~~~~~l~~l~~~~-~~kl~~r~~~~L 142 (426)
...++++..+-..+...|+.. . -....-++.+.+.++... ...-.......+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 111122211111111111100 0 000111122222222110 000112344567
Q ss_pred HHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHH
Q 014350 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMG 222 (426)
Q Consensus 143 a~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~ 222 (426)
|.++...|++++|.+.+++....... + .+.+...+.++...|++.+|...++++....+. ++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~---- 240 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPD-----D-------AQLWNKLGATLANGNRPQEALDAYNRALDINPG--YV---- 240 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-----c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH----
Confidence 77777777777777777777665321 1 133444556677777777777777776544321 11
Q ss_pred HHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 223 IIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..+...|.++...++|.+|...|..+...
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 13334566666777777777777777553
No 55
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.40 E-value=5e-05 Score=71.26 Aligned_cols=208 Identities=8% Similarity=-0.010 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh-------------------
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV------------------- 88 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~------------------- 88 (426)
..+++++|++.|.++++.++++ ..++..++.++...|+++++.+++...+... +..
T Consensus 67 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 67 ENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC----------------
T ss_pred HcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHH
Confidence 3568999999999999887654 4678889999999999999999999987653 211
Q ss_pred --------hhhHHHHHHHHHHHHhcCCCCCChhHHHHH---------HHHHHHHHHhhh-hhhhHHHHhHHHHHHHHHhc
Q 014350 89 --------TRNYSEKCINNIMDFVSGSASQNFSLLREF---------YQTTLKALEEAK-NERLWFKTNLKLCKIWFDMG 150 (426)
Q Consensus 89 --------~k~~~~k~v~~il~~~~~~~~~~~~~~~~~---------~~~~l~~l~~~~-~~kl~~r~~~~La~~~~~~g 150 (426)
.....++++..+-..+...|+ +......+ ++.+.+.++... ...-.......+|.++...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 122223333333333332333 11111110 111122221110 00111245578999999999
Q ss_pred cHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChh------HHHHH
Q 014350 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR------IMGII 224 (426)
Q Consensus 151 ~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~------~~~~i 224 (426)
++++|.+.+++....... ..+.+...+.++...|++.+|...++++....+....+. .....
T Consensus 221 ~~~~A~~~~~~a~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPG------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp CHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 999999999998877421 123455667889999999999999999877665422211 13456
Q ss_pred HHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 225 RECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 225 ~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
+...|.++...+++.+|...|..+...+.
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 67778888899999999988877765543
No 56
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.38 E-value=5.7e-05 Score=68.34 Aligned_cols=172 Identities=7% Similarity=0.069 Sum_probs=111.1
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh-------
Q 014350 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN------- 91 (426)
Q Consensus 20 ~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~------- 91 (426)
.|..|..+ ..+++++|++.|+++++..+.. .+...++..++.+|.+.|+|+++.+.|..+++.. |.....
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 44444443 3568999999999999877642 3456889999999999999999999999999876 543221
Q ss_pred --------------------------HHHHHHHHHHHHhcCCCCCCh-hHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q 014350 92 --------------------------YSEKCINNIMDFVSGSASQNF-SLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (426)
Q Consensus 92 --------------------------~~~k~v~~il~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~ 144 (426)
...+++..+-..+..-|+... ......+..+.. ........+|.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~---------~~~~~~~~~a~ 155 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD---------RLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 112222222222222222110 000000000000 00122357899
Q ss_pred HHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 145 ~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
+|+..|+|++|...++++.....++ ...-+.+......+..+|++.+|...++.+...
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDT---------QATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTS---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCC---------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 9999999999999999998875421 223456666778899999999999998876543
No 57
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.38 E-value=2.6e-05 Score=73.29 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|+++++.++.+ ..++..++.++...|+++++.+++...+... +..... ...+...+....
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----~~~l~~~~~~~~ 104 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFH----ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS-----WFAVGCYYLMVG 104 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH-----HHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH-----HHHHHHHHHHhh
Confidence 468999999999999887754 3445667788899999999999999988875 432221 122222222212
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
.+.+.....++.+++. .. -.......+|.++...|++++|.+.+++....... + ...+...
T Consensus 105 -~~~~~A~~~~~~a~~~---~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~l 165 (330)
T 3hym_B 105 -HKNEHARRYLSKATTL---EK---TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-----C-------HLPMLYI 165 (330)
T ss_dssp -SCHHHHHHHHHHHHTT---CT---TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-----C-------SHHHHHH
T ss_pred -hhHHHHHHHHHHHHHh---CC---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-----c-------HHHHHHH
Confidence 0134455555544331 11 11123456777777778888877777777766421 1 1122334
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
..++...|++.+|...++++....+. ++ ..+...|.++...++|.+|...|..+....
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPE--DP----FVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55677777777777777777554321 11 234455666777777777777777776654
No 58
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.37 E-value=5.6e-05 Score=74.79 Aligned_cols=194 Identities=9% Similarity=0.087 Sum_probs=137.1
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++..+.+ ..++..++.+|...|+++++.+.+...+... +... .....+...+....
T Consensus 156 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCVWD----AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT-----EAFYKISTLYYQLG 225 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH-----HHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcC
Confidence 568999999999999877644 4668889999999999999999999998875 4321 22333333333322
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhh-hhHH--------HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNE-RLWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~-kl~~--------r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~ 179 (426)
+ .+.....++.+++. ..+. ..+. .....+|..+...|++++|.+.+++....... +. .
T Consensus 226 ~--~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~---~ 292 (450)
T 2y4t_A 226 D--HELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-----IA---E 292 (450)
T ss_dssp C--HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----SH---H
T ss_pred C--HHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----ch---H
Confidence 2 44555555554432 1111 1111 11246699999999999999999999886432 21 3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
...+.+...+.++...|++.+|...++++....+. ++ ..+...|.++...++|.+|...|..+.+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--NV----NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34667777788999999999999999988665321 12 34556678888999999999999999763
No 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.32 E-value=6.6e-05 Score=76.03 Aligned_cols=193 Identities=10% Similarity=0.098 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
+++++|++.|.++++..+++ ..++..++.++...|+++++.+.+...+... +.... ....+...+....+
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-----~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY-----PYIQLACLLYKQGK 359 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH-----HHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHcCC
Confidence 34566666666665554432 3445666677777777777777776666654 33221 12222222222112
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
.+.....++.+++. ..+ ...+...+|.++...|++++|.+.+++........... ...+..+....
T Consensus 360 --~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~a 425 (537)
T 3fp2_A 360 --FTESEAFFNETKLK---FPT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI------HVGIGPLIGKA 425 (537)
T ss_dssp --HHHHHHHHHHHHHH---CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC------SSTTHHHHHHH
T ss_pred --HHHHHHHHHHHHHh---CCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh------HHHHHHHHHHH
Confidence 33344444443332 111 11344678999999999999999999988876432111 22333445555
Q ss_pred HHHHhh----------cCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 190 QMYTET----------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 190 rl~~~~----------~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.++... |++.+|...++++....+. ++ ..+...|.++...|+|.+|...|..+....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 677777 9999999999998765321 12 345667888889999999999999997643
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.32 E-value=0.00014 Score=66.53 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
++++++|++.|.++++..+.+......++..++.++...|+++++.+++...+... +.... ....+...+....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~la~~~~~~~ 91 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPE-----VFNYLGIYLTQAG 91 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH-----HHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHH-----HHHHHHHHHHHcc
Confidence 45799999999999987543334468899999999999999999999999998886 44222 2233333333322
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ .+...+.++.+++. ..+ .......+|.++...|++++|.+.+++....... + . .... .
T Consensus 92 ~--~~~A~~~~~~al~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~----~-~~~~---~ 150 (275)
T 1xnf_A 92 N--FDAAYEAFDSVLEL---DPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----D----P-FRSL---W 150 (275)
T ss_dssp C--HHHHHHHHHHHHHH---CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C----H-HHHH---H
T ss_pred C--HHHHHHHHHHHHhc---Ccc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C----h-HHHH---H
Confidence 2 44555655555542 111 1245578999999999999999999999887432 1 1 1111 1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..++...|++.+|...++++....+.. +.. ...+.++...+++.+|...|..++.
T Consensus 151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 151 LYLAEQKLDEKQAKEVLKQHFEKSDKE--QWG-----WNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSCCC--STH-----HHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcc--hHH-----HHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 123466789999999887765433221 111 1122233344555566666555543
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.32 E-value=5.7e-05 Score=64.27 Aligned_cols=154 Identities=10% Similarity=0.029 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|+++++..+++ ..++..++.++...|+++++.+++...+... |
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~ 73 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD----VDVALHLGIAYVKTGAVDRGTELLERSLADA-----------------------P 73 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred hcCHHHHHHHHHHHHHhCccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------C
Confidence 467999999999998876643 4678889999999999999999888776553 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ +. .+...+|.++...|++++|.+.+++....... + ...+...
T Consensus 74 ~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~ 116 (186)
T 3as5_A 74 D-NV------------------------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-----N-------FNVRFRL 116 (186)
T ss_dssp T-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-----h-------HHHHHHH
Confidence 2 00 12456788899999999999999988877421 1 2345556
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
+.++...|++.+|...++++....+. ++ ..+...|.++...++|.+|...|..+....
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRPN--EG----KVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCcc--ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 67888999999999999888655321 12 244566777888899999999998886543
No 62
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.28 E-value=6.1e-05 Score=77.57 Aligned_cols=104 Identities=9% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.....++.++...|++++|.+++++......+.. .+. ....+.+...+.++...|++.+|...++++....+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~p---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 548 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ--SNE---KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-- 548 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCS---GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc--cch---hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--
Confidence 3456899999999999999999999887743211 111 223567777788999999999999999988665321
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
++ ..+...|.++...|+|.+|...|..+.+.
T Consensus 549 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 549 DA----NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 22 34556677888999999999999998764
No 63
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.26 E-value=8.4e-05 Score=76.52 Aligned_cols=190 Identities=10% Similarity=0.045 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|+++++.++++ ..++..++.+|.+.|+++++.+.+..+.+.. +.. ......+...+...
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYN----LDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK-----AVTWLAVGIYYLCV 386 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS-----HHHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc-----HHHHHHHHHHHHHh
Confidence 3578999999999999877643 3446778888899999999999998887654 321 12333344444442
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+...+.++.+++. .. -.......++..|...|++++|.+++++....... + ...+..
T Consensus 387 g~--~~~A~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~ 446 (597)
T 2xpi_A 387 NK--ISEARRYFSKSSTM---DP---QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----T-------HLPYLF 446 (597)
T ss_dssp TC--HHHHHHHHHHHHHH---CT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----C-------SHHHHH
T ss_pred cc--HHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------hHHHHH
Confidence 33 45556666655442 11 11223457788888888888888888888765321 1 123344
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
.+..|...|++.+|...++++....+. ++ ..+...|.++...+++.+|...|.++.+...
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQY--DP----LLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 456778888888888888887654321 23 2455667777788888888888888877643
No 64
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=0.00013 Score=70.99 Aligned_cols=188 Identities=12% Similarity=0.141 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.+.++.+|+. ..+...++.++...|+++++.+.+...+... |.... ....+...+...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~-----~~~~l~~~~~~~ 182 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDL----YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV-----AWSNLGCVFNAQ 182 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTC----THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHc
Confidence 3457788888888888776643 3455677888888888888888888777664 33211 222223333321
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+.....++.+++. . .-.......+|.++...|++++|...+.+....... + ...+..
T Consensus 183 g~--~~~A~~~~~~al~~-~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~ 242 (388)
T 1w3b_A 183 GE--IWLAIHHFEKAVTL-D-----PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-----H-------AVVHGN 242 (388)
T ss_dssp TC--HHHHHHHHHHHHHH-C-----TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-----C-------HHHHHH
T ss_pred CC--HHHHHHHHHHHHhc-C-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----C-------HHHHHH
Confidence 22 33444444444431 1 111223445666666666666666666665554210 1 123333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
...++...|++.+|...++++....+. +|. .+...|..+...+++.+|...|..+...
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPH--FPD----AYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSS--CHH----HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666666666666665443211 111 2333445555566666666666666543
No 65
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=5.4e-05 Score=62.75 Aligned_cols=138 Identities=9% Similarity=0.079 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 014350 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (426)
..+++++|++.|.+.++..+ .+......++..++.++...|+++++.+++...+...+..........+...+...+.
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35689999999999988654 2344456789999999999999999999999998887232223333444444444444
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
...+ .+...+.++.+++..+...+......+...+|.++...|++++|.+.+++......
T Consensus 101 ~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 101 LLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 3333 56677777777776655444444557778999999999999999999999887654
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.24 E-value=2e-05 Score=84.61 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
++++++|++.|++.++.+++. ..++.+++.+|.+.|+++++.++|.+.+.+. |
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~----~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----------------------P 74 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----------------------P 74 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 567889999999988887754 5678888899999999999988888777664 3
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ . .....+||.++.+.|++++|.+.+++....-.+ ..+.+...
T Consensus 75 ~--~-----------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------------~~~a~~~L 117 (723)
T 4gyw_A 75 T--F-----------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------------FADAHSNL 117 (723)
T ss_dssp T--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C--C-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHH
Confidence 3 0 012457888888899999998888888776321 23455666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..++...|++.+|...++++..+.... + ..+...|.++...++|.+|...|..+..
T Consensus 118 g~~~~~~g~~~eAi~~~~~Al~l~P~~--~----~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 118 ASIHKDSGNIPEAIASYRTALKLKPDF--P----DAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCC--H----HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--h----HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 677888889999988888887664321 1 1233445666677788888777777644
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.23 E-value=7.2e-05 Score=68.33 Aligned_cols=183 Identities=11% Similarity=0.106 Sum_probs=127.3
Q ss_pred HHhCCHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhh--hhhhhHHHHhH
Q 014350 65 YRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA--KNERLWFKTNL 140 (426)
Q Consensus 65 ~~~~~~~~l~e~~~~l~~~~~~~~--~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~kl~~r~~~ 140 (426)
...|+++++.+++.+.+...+... .......+...+...+....+ .+.....++.+++..+.. .+......+..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 345788888888888888763222 223455556666655544333 566777777777665443 33345557788
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC--CCh
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--PHP 218 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~--~~p 218 (426)
.+|.++...|++++|.+.+.+.........+.++ ......+.....++...|++.+|...++++..+.... .++
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH----PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998877533211111 3456777777889999999999999999987664332 122
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
..........|.++...++|.+|...|.++.....
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 23345666778899999999999999999987543
No 68
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=0.00011 Score=71.62 Aligned_cols=192 Identities=13% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|+..+...++.++.+ ..++..++.+|.+.|+++++.+.|.+.+... |...... ..+...+....
T Consensus 46 ~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-----~~l~~~~~~~g 115 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGY-----INLAAALVAAG 115 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH-----HHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHH-----HHHHHHHHHcC
Confidence 567888888888888776643 4577888888888888888888888887764 4322111 11111111101
Q ss_pred CCChhHHHHHHHHHHH---------------------------HHHhhh-hhhhHHHHhHHHHHHHHHhccHHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLK---------------------------ALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILK 160 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~---------------------------~l~~~~-~~kl~~r~~~~La~~~~~~g~~~~A~~ll~ 160 (426)
+ .+.....++.+++ .++... ...-.......+|.++...|++++|.+.++
T Consensus 116 ~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 116 D--MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp C--SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1122222222221 110000 000111233455666666666666666666
Q ss_pred HHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHH
Q 014350 161 ELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAD 240 (426)
Q Consensus 161 el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~ 240 (426)
+....... ..+.+.....++...+++.+|...++++....+. ++ ..+...|.++...+++.+
T Consensus 194 ~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 194 KAVTLDPN------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN--HA----VVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHHCTT------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--CH----HHHHHHHHHHHHcCCHHH
Confidence 65554210 1233444445566666666666666655443211 11 233445667777788888
Q ss_pred HHHHHHHHHh
Q 014350 241 AATDFFEAFK 250 (426)
Q Consensus 241 A~~~f~ea~~ 250 (426)
|...|..+..
T Consensus 256 A~~~~~~al~ 265 (388)
T 1w3b_A 256 AIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777765
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.22 E-value=0.00053 Score=66.28 Aligned_cols=198 Identities=7% Similarity=-0.082 Sum_probs=133.6
Q ss_pred chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh
Q 014350 49 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (426)
Q Consensus 49 ~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~ 128 (426)
+..+...+....+.++...|+++++.+++...+... +.........+...+...+....+ .+.....++.+++....
T Consensus 9 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~ 85 (373)
T 1hz4_A 9 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGE--LTRSLALMQQTEQMARQ 85 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHh
Confidence 345556777888899999999999999999988876 432222222233333333322122 45566666766665444
Q ss_pred hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 129 ~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
..+..........+|.++...|++++|...+++.........+... ......+.....++...|++.+|...++++
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL----PMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS----THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333455679999999999999999999999887643321100 123344555667889999999999999999
Q ss_pred HhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 209 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 209 ~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
........++. ....+...|.++...+++.+|...+.++......
T Consensus 162 l~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 162 IEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 77765544443 3345566788899999999999999998765433
No 70
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.3e-05 Score=74.61 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=83.1
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHhhhc
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---TKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~---~~d~~kak~~l~~a~~i~~ 213 (426)
.....+|.++...|++++|...+++......... +. ......+.....++.. .|++.+|...++++....+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLD---GI---YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS---SC---SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc---hH---HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 3456889999999999999999999887754321 10 1123456666778889 9999999999998866532
Q ss_pred cCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 014350 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269 (426)
Q Consensus 214 ~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~~~~~~lky~~L 269 (426)
. ++ ..+...|.++...++|.+|...|..+.... ..++.....+.+.-.
T Consensus 447 ~--~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 447 R--SE----QAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQAITFAEA 494 (514)
T ss_dssp T--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHH
T ss_pred c--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 1 12 244566788889999999999999997643 223344444444433
No 71
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.00019 Score=70.78 Aligned_cols=190 Identities=13% Similarity=0.007 Sum_probs=139.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhh------------hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHH
Q 014350 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAV------------TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 127 (426)
Q Consensus 60 l~~l~~~~~~~~~l~e~~~~l~~~~~~~~------------~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~ 127 (426)
-++-+.+.|+|++|.+.|..+++.. +.. .....++++.++...+....+ .+...+.+..+++...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 3566788999999999999998875 321 234456677788887766444 6677777777777655
Q ss_pred hhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 014350 128 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (426)
Q Consensus 128 ~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~ 207 (426)
..+..+.-..+...++.++...|++++|.+++++....+..... + .....+....++++...|++.+|...+..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~----~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--V----FLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--C----SSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--c----HHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 44333333344567888888899999999999998887654321 1 33456666777899999999999999999
Q ss_pred HHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcch
Q 014350 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (426)
Q Consensus 208 a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~~ 258 (426)
+........+......+....|.++...+||.+|...+..+.........+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 876665555545566778888999999999999999999987655444444
No 72
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.18 E-value=8.6e-05 Score=75.16 Aligned_cols=192 Identities=8% Similarity=0.021 Sum_probs=127.7
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++.+++ ..++..++.++...|+++++.+++...+... +.... ....+...+....
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-----PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP-----TYYHRGQMYFILQ 324 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCC-----chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH-----HHHHHHHHHHhcC
Confidence 45788999999999887654 4677889999999999999999999988875 43222 2233333333222
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ .+.....++.+++. ..+ .......+|.++...|++++|.+.+++....... + .+.+...
T Consensus 325 ~--~~~A~~~~~~a~~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l 384 (537)
T 3fp2_A 325 D--YKNAKEDFQKAQSL---NPE---NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----L-------PEVPTFF 384 (537)
T ss_dssp C--HHHHHHHHHHHHHH---CTT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHH
T ss_pred C--HHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHH
Confidence 2 44555555554442 111 1134567899999999999999999998887431 1 1234444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHh----------hcHHHHHHHHHHHHhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE----------RQWADAATDFFEAFKN 251 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~----------~~y~~A~~~f~ea~~~ 251 (426)
..++...|++.+|...++++....+...............|.++... ++|.+|...|..+...
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 67888999999999999988666543332111111123334555566 9999999999988764
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.17 E-value=0.00015 Score=73.64 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCCCH-HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 28 VETDP-EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 28 ~~~~~-~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
..+++ ++|++.|++.++.++++ ..++..++.+|...|+++++.++|...+... +. ......+...+..
T Consensus 114 ~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~------~~~~~~lg~~~~~ 182 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN------KVSLQNLSMVLRQ 182 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC------HHHHHHHHHHHTT
T ss_pred hccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------HHHHHHHHHHHHH
Confidence 35578 99999999999988754 4678899999999999999999999998875 33 2445555555544
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhh-hhhhHHHHhHHHHHHHHHh--------ccHHHHHHHHHHHHhhcccCCCCcchhh
Q 014350 107 SASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKK 177 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~-~~kl~~r~~~~La~~~~~~--------g~~~~A~~ll~el~~~~~~~~~~~d~~~ 177 (426)
...........-++.+.+.++.+- -..-.......||.++... |++++|.+.+++.......
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------- 253 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK--------- 253 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---------
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---------
Confidence 211112122222333333333211 0011123456888999888 9999999999999887321
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHH
Q 014350 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (426)
Q Consensus 178 ~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~ 244 (426)
.....+.+.....++...|++.+|...++++....+.. + ..+...|.++...+++.+|...
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~----~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW--P----EPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 01234566677788999999999999999997764321 2 2233445555566777766643
No 74
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.10 E-value=0.00017 Score=62.95 Aligned_cols=151 Identities=12% Similarity=0.086 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 014350 28 VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (426)
..+++++|++.|.+.++... .+..+...++..++.++...|+++++.+++.+.+... ..
T Consensus 38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~------------------ 98 (203)
T 3gw4_A 38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL-AS------------------ 98 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH------------------
T ss_pred HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HH------------------
Confidence 35789999999999987433 2445578899999999999999999999999888775 22
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHH
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~ 185 (426)
.++ +. .........+|.++...|++++|...+++......... +. ......+
T Consensus 99 -~~~-~~--------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~---~~~~~~~ 150 (203)
T 3gw4_A 99 -LPE-DP--------------------LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD---DQ---VAIACAF 150 (203)
T ss_dssp -SCC-CH--------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CH---HHHHHHH
T ss_pred -cCc-cH--------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc---ch---HHHHHHH
Confidence 121 00 00112356899999999999999999999887654321 21 3345556
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHH
Q 014350 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (426)
Q Consensus 186 l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~ 225 (426)
.....++...|++.+|...++++..+.....++...+...
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELM 190 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777889999999999999999987776666665444433
No 75
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.08 E-value=0.0016 Score=58.39 Aligned_cols=105 Identities=9% Similarity=0.136 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh-h
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-N 131 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~ 131 (426)
...++..++..++..|+++++.+++...+... .. ......+...+....+ .+...+.++.+++.-.... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~------~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~ 74 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD------ITYLNNRAAAEYEKGE--YETAISTLNDAVEQGREMRAD 74 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccccc
Confidence 46788999999999999999999999998873 11 1223333333333222 5556666666555322211 1
Q ss_pred hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 132 ~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
......+...+|.++...|++++|.+.+++.....
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 109 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 11224677899999999999999999999998863
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.08 E-value=0.00017 Score=64.48 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchh-hh-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAE-WG-----------FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~-~~-----------~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k 95 (426)
..+++++|++.|.+.++.+|++.. |. .+...+++.+|...|+++++.+.|...+...
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 84 (208)
T 3urz_A 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA----------- 84 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------
Confidence 457899999999999998875321 11 1122339999999999999999998887774
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcch
Q 014350 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (426)
Q Consensus 96 ~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~ 175 (426)
|+ +. .....+|.++...|++++|...++++...-++ +
T Consensus 85 ------------p~-~~------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-----~- 121 (208)
T 3urz_A 85 ------------PN-NV------------------------DCLEACAEMQVCRGQEKDALRMYEKILQLEAD-----N- 121 (208)
T ss_dssp ------------TT-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-
T ss_pred ------------CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-
Confidence 33 00 12568899999999999999999999887431 1
Q ss_pred hhhhhHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 176 KKGSQLLEVYAIEIQMYTETKN--NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 176 ~~~~~l~e~~l~e~rl~~~~~d--~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.+.+.....++...++ ...+...++++. .++|... .+...|..+...++|.+|..+|..+...+
T Consensus 122 ------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 122 ------LAANIFLGNYYYLTAEQEKKKLETDYKKLS-----SPTKMQY--ARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred ------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----CCCchhH--HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1223333334443333 233333322221 1233222 23345788888999999999999998754
No 77
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00019 Score=72.02 Aligned_cols=191 Identities=9% Similarity=0.062 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHHHHhc-----C--Cccc---hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVA-----M--EPEK---AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~-----~--~~~~---~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
.+++++|++.|.++++ . .+++ ......++..++.++...|+++++.+++...+... +. .....
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~------~~~~~ 274 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR------VNSYI 274 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC------HHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc------HHHHH
Confidence 6789999999999988 5 3332 24457889999999999999999999999998875 33 33444
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.+...+....+ .+.....++.+++. ..+ .......+|.++...|++++|...+.+....... +
T Consensus 275 ~l~~~~~~~~~--~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~---- 337 (514)
T 2gw1_A 275 YMALIMADRND--STEYYNYFDKALKL---DSN---NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-----N---- 337 (514)
T ss_dssp HHHHHHHTSSC--CTTGGGHHHHHHTT---CTT---CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-----C----
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHhhc---CcC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-----h----
Confidence 44444443222 22334444443331 111 1234568899999999999999999999887432 1
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.+.+...+.++...|++.+|...++++....+. ++ ..+...|.++...++|.+|...|..+....
T Consensus 338 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 338 ---IFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--AP----EVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp ---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 134555567889999999999999988665332 12 234556788889999999999999987644
No 78
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.99 E-value=0.00053 Score=59.08 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
+..++.++|.+|.+.|+++++.+.|.+.++.. |+ +.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 39 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-----------------------PN-NV-------------------- 39 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46788999999999999999999999887764 43 10
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+|.++...|++++|.+.+......... + ..........+...+++..+...+.++....
T Consensus 40 ----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 40 ----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-----S-------AEAYYILGSANFMIDEKQAAIDALQRAIALN 103 (184)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 02467899999999999999999998877432 1 2344445567888999999999998886653
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+. ++ ......|.++...++|.+|...|..+.+
T Consensus 104 ~~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 104 TV--YA----DAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp TT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cc--ch----HHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 22 12 2345568888899999999999998865
No 79
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.99 E-value=0.00034 Score=62.54 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|+++++.++++ ..++..++.++...|+++++.+++...+... +.... ....+...+...
T Consensus 69 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~a~~~~~~ 138 (243)
T 2q7f_A 69 SVNELERALAFYDKALELDSSA----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGD-----LFYMLGTVLVKL 138 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHH-----HHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHHh
Confidence 3568999999999999887643 5678889999999999999999999998876 43221 222233333322
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+ .+.....++.+++. .. -.......+|.++...|++++|.+.+++....... + .+.+..
T Consensus 139 ~~--~~~A~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~ 198 (243)
T 2q7f_A 139 EQ--PKLALPYLQRAVEL---NE---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-----H-------ADAFYN 198 (243)
T ss_dssp SC--HHHHHHHHHHHHHH---CT---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-----C-------HHHHHH
T ss_pred cc--HHHHHHHHHHHHHh---CC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------HHHHHH
Confidence 22 44455555544442 11 11234578999999999999999999999877421 1 235566
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+.++...|++.+|...++++....
T Consensus 199 la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 199 AGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHccCHHHHHHHHHHHHccC
Confidence 6788999999999999999987654
No 80
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=6.7e-05 Score=76.85 Aligned_cols=139 Identities=11% Similarity=0.045 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF 103 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~ 103 (426)
.++++++|+..|+++++... ++-.++.+++.+|+.+|..+|+|++|.+++.+.+...+..
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~---------------- 384 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL---------------- 384 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------------
Confidence 57789999999999998654 2345689999999999999999999999999998886221
Q ss_pred hcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
+. |+.+ + +. ....+||.+|...|+|++|..++++........-|.+. ....+
T Consensus 385 lG--~~Hp-~-----------~a----------~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H----p~~~~ 436 (490)
T 3n71_A 385 YH--HNNA-Q-----------LG----------MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH----PITKD 436 (490)
T ss_dssp SC--TTCH-H-----------HH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS----HHHHH
T ss_pred cC--CCCH-H-----------HH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC----hHHHH
Confidence 22 2210 0 11 12579999999999999999999988776544444332 22334
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
......+.+..++.+..|...+.+++.
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443434455666777777777776654
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.95 E-value=0.0021 Score=56.31 Aligned_cols=169 Identities=9% Similarity=-0.056 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++.++...|+++++.+++...+... +... .....+...+....+ .+...+.++.+++. ..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~---~~~- 74 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNE-----LAWLVRAEIYQYLKV--NDKAQESFRQALSI---KPD- 74 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHH---CTT-
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccch-----HHHHHHHHHHHHcCC--hHHHHHHHHHHHHh---CCC-
Confidence 46788899999999999999999999998876 4322 222333333332222 44555555555442 111
Q ss_pred hhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 133 RLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~-g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
.......+|.++... |++++|.+.+++... ... + ......+.....++...|++.+|...++++...
T Consensus 75 --~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~-----~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 75 --SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT-----Y----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp --CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT-----C----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC-----C----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123456899999999 999999999999887 111 1 113455666678899999999999999988665
Q ss_pred hccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 212 ~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+. ++ ..+...|.++...++|.+|...|..+...
T Consensus 143 ~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 143 QPQ--FP----PAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp STT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCC--Cc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 12 23455677888899999999999988764
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.94 E-value=3.9e-05 Score=65.06 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
++++++|++.|++.+..+++. ......++.+|++.|+|+++.+++.+.+... |
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~----~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-----------------------p 62 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQK----SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-----------------------E 62 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHH----HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cChHHHHHHHHHHhcccCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 457899999999998776532 3345689999999999999999999888774 3
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ +. .....+|.+|...|++++|...+++......+ -.+.+...
T Consensus 63 ~-~~------------------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l 105 (150)
T 4ga2_A 63 R-DP------------------------KAHRFLGLLYELEENTDKAVECYRRSVELNPT------------QKDLVLKI 105 (150)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC------------CHHHHHHH
Confidence 3 00 02468899999999999999999998887321 23455666
Q ss_pred HHHHHhhcCHHH-HHHHHHHHHhhhc
Q 014350 189 IQMYTETKNNKK-LKQLYQKALAIKS 213 (426)
Q Consensus 189 ~rl~~~~~d~~k-ak~~l~~a~~i~~ 213 (426)
..++...+++.. ++..++++.++.+
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 678888998865 5556788876653
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.94 E-value=0.0007 Score=62.11 Aligned_cols=144 Identities=8% Similarity=0.084 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR--------LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~--------~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (426)
..+++++|++.|+++++..|++. ....++..++.++.. .|+++++.+.+..++... |.....
T Consensus 64 ~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~-------- 133 (261)
T 3qky_A 64 QNKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELV-------- 133 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTH--------
T ss_pred HhCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhH--------
Confidence 35689999999999999877432 246889999999999 999999999999998886 431110
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhh
Q 014350 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (426)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~ 179 (426)
......+..+... +......+|.+|...|+|++|...++++.....++ .
T Consensus 134 -------------~~a~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~ 182 (261)
T 3qky_A 134 -------------DDATQKIRELRAK---------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT---------P 182 (261)
T ss_dssp -------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------T
T ss_pred -------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC---------c
Confidence 0000111111111 11225789999999999999999999998875421 2
Q ss_pred hHHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHhhh
Q 014350 180 QLLEVYAIEIQMYTET----------KNNKKLKQLYQKALAIK 212 (426)
Q Consensus 180 ~l~e~~l~e~rl~~~~----------~d~~kak~~l~~a~~i~ 212 (426)
...+.+....+.+... |++.+|...++++....
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 2344555556667655 88899999998876543
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.90 E-value=0.00019 Score=74.28 Aligned_cols=153 Identities=11% Similarity=0.068 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++.++++ ..++..++.++...|+++++.+++.+.+... |
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALH-----------------------P 54 (568)
T ss_dssp -------------------CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-----------------------T
T ss_pred CccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 467899999999999887754 4678899999999999999999998887653 3
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ +. .....+|.++...|++++|.+.+++......+ + .+.+...
T Consensus 55 ~-~~------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~l 97 (568)
T 2vsy_A 55 G-HP------------------------EAVARLGRVRWTQQRHAEAAVLLQQASDAAPE-----H-------PGIALWL 97 (568)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----C-------HHHHHHH
Confidence 2 00 02457888888999999999998888877321 1 2445555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHh---hcHHHHHHHHHHHHhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE---RQWADAATDFFEAFKN 251 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~---~~y~~A~~~f~ea~~~ 251 (426)
..++...|++.+|...++++....+. ++ ..+...|.++... +++.+|...|.++.+.
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLPE--EP----YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 67788889999999998888665422 12 2334455666677 8889999888888653
No 85
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.90 E-value=0.00029 Score=70.25 Aligned_cols=208 Identities=11% Similarity=0.069 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHhcCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE--KCINNIMDFVSGS 107 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~--k~v~~il~~~~~~ 107 (426)
+++++|++.|++.+..+++. ..++..++.+|...|+++++.+.+.+.+... |........ .+.+.........
T Consensus 227 ~~~~~a~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGV----TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhCccH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhH
Confidence 45778888888887776643 4567889999999999999999999998876 543222111 1111111111110
Q ss_pred C---CCChhHHHHHHHHHHHHHHhhhhh-hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH
Q 014350 108 A---SQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (426)
Q Consensus 108 ~---~~~~~~~~~~~~~~l~~l~~~~~~-kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e 183 (426)
. ..........++.+.+.++.+... .........+|.++...|++++|.+.+++....... + ...-.
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~-----~----~~~~~ 372 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT-----P----VAKQL 372 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC-----H----HHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC-----C----hHHHH
Confidence 0 011223344445555544432211 122244568999999999999999999998765321 1 11222
Q ss_pred HHHHHHHH-HHhhcCHHHHHHHHHHHHhhhccCCCh-h----HH-------------HHHHHhhHHHhHHhhcHHHHHHH
Q 014350 184 VYAIEIQM-YTETKNNKKLKQLYQKALAIKSAIPHP-R----IM-------------GIIRECGGKMHMAERQWADAATD 244 (426)
Q Consensus 184 ~~l~e~rl-~~~~~d~~kak~~l~~a~~i~~~~~~p-~----~~-------------~~i~~~~g~~~~~~~~y~~A~~~ 244 (426)
++..-..+ ....|++.+|...+.++.++.+..... . +. +..+..-|.++...|+|.+|..+
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~ 452 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADED 452 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33332233 346789999999999887664332110 0 00 11234567788888899999988
Q ss_pred HHHHHhh
Q 014350 245 FFEAFKN 251 (426)
Q Consensus 245 f~ea~~~ 251 (426)
|..+.+.
T Consensus 453 y~kALe~ 459 (472)
T 4g1t_A 453 SERGLES 459 (472)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 8888763
No 86
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.0031 Score=57.96 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
.+++++|++.|++.++.. + ..++..++.+|.. .|+++++.+++.+....- .......+...+
T Consensus 19 ~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 84 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLK--E----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLY 84 (273)
T ss_dssp TTCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 358999999999998732 2 3578889999999 999999999999887662 112233333333
Q ss_pred cC----CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhcccCCCCcchh
Q 014350 105 SG----SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQK 176 (426)
Q Consensus 105 ~~----~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~ll~el~~~~~~~~~~~d~~ 176 (426)
.. ..+ .+...+.++.+.+. . .......||.+|.. .|++++|.+.+++....- +.
T Consensus 85 ~~g~~~~~~--~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~- 146 (273)
T 1ouv_A 85 YSGQGVSQN--TNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------DG- 146 (273)
T ss_dssp HHTSSSCCC--HHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CH-
T ss_pred hCCCCcccC--HHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-------cH-
Confidence 32 222 45556666655441 1 33456799999999 999999999999987752 11
Q ss_pred hhhhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH----hhcHHHHHHHHHHH
Q 014350 177 KGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEA 248 (426)
Q Consensus 177 ~~~~l~e~~l~e~rl~~~----~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea 248 (426)
+.+.....++.. .+|+.+|...++++.... ++. .....|.++.. .++|.+|..+|..+
T Consensus 147 ------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 147 ------DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSP----GCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp ------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH----HHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 223333456666 899999999999886542 222 23445677777 89999999999988
Q ss_pred Hh
Q 014350 249 FK 250 (426)
Q Consensus 249 ~~ 250 (426)
.+
T Consensus 213 ~~ 214 (273)
T 1ouv_A 213 CE 214 (273)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 87
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.88 E-value=0.0017 Score=58.62 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++.++...|+++++.+++...+... +... .....+...+....+ .+...+.++.+++. ..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~-----~~~~~la~~~~~~~~--~~~A~~~~~~a~~~---~~-- 102 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSA-----DAHAALAVVFQTEME--PKLADEEYRKALAS---DS-- 102 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTC--HHHHHHHHHHHHHH---CT--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChH-----HHHHHHHHHHHHcCC--HHHHHHHHHHHHHH---Cc--
Confidence 47889999999999999999999999998875 4321 222333333332222 44555555554442 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
-...+...+|.++...|++++|.+.+.+... ... + ......+.....++...|++.+|...++++....
T Consensus 103 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~-----~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 103 -RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTL-----Y----PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTT-----C----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc-----C----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1134557889999999999999999999877 100 1 1134556666778899999999999999886653
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+. ++ ..+...|.++...++|.+|...|..+..
T Consensus 172 ~~--~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 172 RN--QP----SVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp SC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 12 2445667788889999999999888765
No 88
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.0021 Score=59.15 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=125.1
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
.+++++|++.|++.++.+ ...++..++.+|.. .|+++++.+++.+....- .......+...+
T Consensus 55 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGIY 120 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHHH
Confidence 678999999999998764 25678899999999 999999999999887652 122333444444
Q ss_pred cC----CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhcccCCCCcchh
Q 014350 105 SG----SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQK 176 (426)
Q Consensus 105 ~~----~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~ll~el~~~~~~~~~~~d~~ 176 (426)
.. ..+ .+...+.++.+.+. . .......+|.+|.. .|++++|.+.+++..... +
T Consensus 121 ~~~~~~~~~--~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~-- 181 (273)
T 1ouv_A 121 HDGKVVTRD--FKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------D-- 181 (273)
T ss_dssp HHCSSSCCC--HHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------C--
T ss_pred HcCCCcccC--HHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------C--
Confidence 33 223 55556666655541 1 23446789999999 999999999999887651 1
Q ss_pred hhhhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH----hhcHHHHHHHHHHH
Q 014350 177 KGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEA 248 (426)
Q Consensus 177 ~~~~l~e~~l~e~rl~~~----~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea 248 (426)
.+.+.....++.. .+|+.+|...++++.... ++. .....|.++.. .+++.+|..+|..+
T Consensus 182 -----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~----a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 182 -----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGG----GCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp -----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHH----HHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHH----HHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 1233444567778 899999999999886542 221 23344666666 88999999999988
Q ss_pred Hh
Q 014350 249 FK 250 (426)
Q Consensus 249 ~~ 250 (426)
.+
T Consensus 249 ~~ 250 (273)
T 1ouv_A 249 CK 250 (273)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.83 E-value=0.0036 Score=56.20 Aligned_cols=188 Identities=10% Similarity=-0.055 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhh
Q 014350 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (426)
Q Consensus 52 ~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 131 (426)
|+..++.+.+..+.+.|+|+++.+.+..++... |.- .....+.-.+...+....+ .+.....++.+++ ...+
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~--~~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~---~~P~ 73 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFG--PYSQQVQLDLIYAYYKNAD--LPLAQAAIDRFIR---LNPT 73 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS--TTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH---HCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC--hHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH---HCcC
Confidence 456788899999999999999999999998875 431 1122233333333332222 3344444444333 1111
Q ss_pred hhhHHHHhHHHH------------------HHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh-----hhHHHHHHHH
Q 014350 132 ERLWFKTNLKLC------------------KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG-----SQLLEVYAIE 188 (426)
Q Consensus 132 ~kl~~r~~~~La------------------~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~-----~~l~e~~l~e 188 (426)
....-.....+| ..+.+.|++++|...++++.....+.....+.... ..+.+.....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111223333 44445789999999999998875432111010000 0001111344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+++...|++..|...++++.... ++...........|..+...|++.+|...|..+..
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 567788888888888888775543 22112223455667777888888888877766544
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.82 E-value=0.002 Score=57.52 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl 134 (426)
.++...+.+++..|+++++.+.+...+... +. ++ .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~--------------------~~--~---------------------- 42 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NN--------------------QD--S---------------------- 42 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT--------------------CC--H----------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CC--------------------CC--c----------------------
Confidence 678889999999999999999999988775 20 12 1
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
.....+|..+...|++++|.+.+++...... ...+.+.....++...|++.+|...++++....+.
T Consensus 43 --~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 43 --VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 0134589999999999999999999987632 13456667778899999999999999998776432
Q ss_pred CCC-hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 215 IPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 215 ~~~-p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+. ....+..+...|.++...++|.+|...|..+...
T Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 211 1223456778899999999999999999999763
No 91
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00049 Score=56.39 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-C
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-H 217 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~-~ 217 (426)
..+||..++..|+|++|.+.+++.....++ -...+.....++..+|++.+|...++++..+.+... .
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS------------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 458999999999999999999999887321 134566667789999999999999999987765543 3
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
+...+..+...|.++...++|.+|..+|..+...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556777788899999999999999999998753
No 92
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.80 E-value=0.00091 Score=60.93 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++...+...
T Consensus 55 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 55 SLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3567999999999998887654 4567888999999999999999999888765
No 93
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.78 E-value=0.0019 Score=57.88 Aligned_cols=165 Identities=13% Similarity=0.156 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~k 133 (426)
..++..++.++.+.|+++++...+...+..- |..... ...+...+....+ .+.....++.+++. . -
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a-----~~~lg~~~~~~g~--~~~A~~~~~~al~~---~---P 70 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEA-----LYWLARTQLKLGL--VNPALENGKTLVAR---T---P 70 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHH-----HHHHHHHHHHTTC--HHHHHHHHHHHHHH---C---T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH-----HHHHHHHHHHcCC--HHHHHHHHHHHHHh---C---C
Confidence 4567889999999999999999999998875 543222 2222222222122 34445555544442 1 1
Q ss_pred hHHHHhHHHHHHHHHh-----------ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHH
Q 014350 134 LWFKTNLKLCKIWFDM-----------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (426)
Q Consensus 134 l~~r~~~~La~~~~~~-----------g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak 202 (426)
-+......+|.++... |++++|...+++......+ -.+.+.....++...|++.+|.
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------------~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------------YAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCChHHHH
Confidence 1233456889999999 9999999999999887321 1245556677899999999999
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 203 QLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 203 ~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..++++..+. .+|. .+...|.++...++|.+|...|..+...
T Consensus 139 ~~~~~al~~~---~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 139 ASLKQALALE---DTPE----IRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHC---CCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---cchH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999997765 3333 3456678888999999999999998763
No 94
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.76 E-value=0.0009 Score=67.87 Aligned_cols=186 Identities=14% Similarity=0.058 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKY-KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~-~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (426)
.++|++.+.+.....+. ...++..++.++...|++ +++.++|.+.++.. +... .....+...+....+
T Consensus 84 ~~~al~~l~~~~~~~~~----~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~-----~a~~~lg~~~~~~g~- 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV----EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELV-----EAWNQLGEVYWKKGD- 152 (474)
T ss_dssp HHHHHHHHHHHHTTCCC----CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhccCch----hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCH-----HHHHHHHHHHHHcCC-
Confidence 56777777776655443 367889999999999999 99999999999886 5432 223333333332222
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHh---------ccHHHHHHHHHHHHhhcccCCCCcchhhhhhH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM---------GEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~---------g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l 181 (426)
.+.....++.+++. ..+ ......+|.++... |++++|.+.+++......+ +
T Consensus 153 -~~~A~~~~~~al~~---~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~------- 212 (474)
T 4abn_A 153 -VTSAHTCFSGALTH---CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----D------- 212 (474)
T ss_dssp -HHHHHHHHHHHHTT---CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----C-------
T ss_pred -HHHHHHHHHHHHhh---CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----C-------
Confidence 44555555554442 112 25667899999999 9999999999999887431 1
Q ss_pred HHHHHHHHHHHHhh--------cCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 182 LEVYAIEIQMYTET--------KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 182 ~e~~l~e~rl~~~~--------~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+.+.....++... +++.+|...++++....+.. .-....+...|.++...++|.+|...|..+...
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 13344445566666 88999999999997764310 012345667788888999999999999998763
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.75 E-value=0.01 Score=55.91 Aligned_cols=150 Identities=11% Similarity=0.120 Sum_probs=83.0
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
+-.+++++|++.++++...++++ ...+..-+++.|...|+++.++..++.. .......+..+...+..
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~---~~e~~~~l~r~yi~~g~~~~al~~~~~~---------~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPER---DVERDVFLYRAYLAQRKYGVVLDEIKPS---------SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHHHTTCHHHHHHHSCTT---------SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCCchh---hHHHHHHHHHHHHHCCCHHHHHHHhccc---------CChhHHHHHHHHHHHcC
Confidence 34678999999998876555432 2344556688999999999998765331 11233455555555554
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
..+ .+...+.++ +.+....+ .-.......+|.++...|++++|.+.+.+ + ++ .+.+.
T Consensus 78 ~~~--~~~A~~~l~---~ll~~~~~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~---~~-------~~~~~ 134 (291)
T 3mkr_A 78 HSR--RDAIVAELD---REMSRSVD-VTNTTFLLMAASIYFYDQNPDAALRTLHQ-------G---DS-------LECMA 134 (291)
T ss_dssp STT--HHHHHHHHH---HHHHSCCC-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------C---CS-------HHHHH
T ss_pred CCc--HHHHHHHHH---HHHhcccC-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------C---CC-------HHHHH
Confidence 222 222222222 12211000 00112345667777777777777766655 1 01 13444
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 187 IEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 187 ~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
..++++...|++.+|...++++...
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 4556666777777777777666554
No 96
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.74 E-value=0.0026 Score=60.05 Aligned_cols=193 Identities=11% Similarity=0.111 Sum_probs=123.2
Q ss_pred HHhhcc-cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-hhhhhhhHHHHHHH
Q 014350 21 SILEKG-LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI-KSAVTRNYSEKCIN 98 (426)
Q Consensus 21 ~~~ak~-~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~-~~~~~k~~~~k~v~ 98 (426)
++.++. +..++++.|+..++.. +.. ...++..++..+...|+++++++.+..++..- .|. +...-..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~-----~~~--~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~---~~~~~~~- 106 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS-----SAP--ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT---NTTFLLM- 106 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT-----SCH--HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS---CHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHhccc-----CCh--hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC---CHHHHHH-
Confidence 344554 4466899999876542 111 36788889999999999999999999887541 122 2111111
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
+...+....+ .+. +++.++. .-.......+|.++...|++++|.+.++++..... ++
T Consensus 107 -la~~~~~~g~--~~~-------Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~---- 163 (291)
T 3mkr_A 107 -AASIYFYDQN--PDA-------ALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE-----DA---- 163 (291)
T ss_dssp -HHHHHHHTTC--HHH-------HHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC----
T ss_pred -HHHHHHHCCC--HHH-------HHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----Cc----
Confidence 1122221111 222 2333332 12234567889999999999999999999988732 11
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
....+...-..++...|++.+|...++++....+. ++ .++...|.+++..|+|.+|...|.++......
T Consensus 164 -~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 164 -TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--TL----LLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp -HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 12222222234555668899999999988654221 22 34556778888999999999999999876554
No 97
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.72 E-value=0.0011 Score=55.48 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
...+..++..++..|+++++.+++...+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444555555555555555555555555444
No 98
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.70 E-value=0.0015 Score=64.52 Aligned_cols=238 Identities=10% Similarity=0.052 Sum_probs=134.7
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK-YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~-~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
+++++|++.|.++++.++++ ..++..++.++...|+ ++++++.+.+.+... |
T Consensus 111 g~~~~Al~~~~~al~l~P~~----~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-----------------------P 163 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNAAN----YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-----------------------P 163 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-----------------------T
T ss_pred CChHHHHHHHHHHHHhCccC----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-----------------------C
Confidence 44666777777766666543 3455666666666665 776666666665553 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ ...+..++|.++...|++++|...+++....-.+ -...+...
T Consensus 164 ~-------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------------~~~a~~~l 206 (382)
T 2h6f_A 164 K-------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------------NYHAWQHR 206 (382)
T ss_dssp T-------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------------CHHHHHHH
T ss_pred C-------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------------CHHHHHHH
Confidence 2 0112457788888899999999999999887321 22445555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH-hhcHHHH-----HHHHHHHHhhhhhhcchhHHH
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA-ERQWADA-----ATDFFEAFKNYDEAGNQRRIQ 262 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~-~~~y~~A-----~~~f~ea~~~~~~~~~~~~~~ 262 (426)
..++...|++.+|...++++..+.... + ..+..-|.++.. .+.+.+| ..+|..+...- |....
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P~~--~----~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-----P~~~~ 275 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDVRN--N----SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-----PHNES 275 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-----TTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-----CCCHH
Confidence 567788899999999999887654321 1 233444555555 3333566 35666665421 21112
Q ss_pred HHHHHHHHHHhhCCCCCCCCc--ccccccCCCcccH-HHHHHHHHHhhC------CHHH-HHHHHHHhHHH-hcCChhHH
Q 014350 263 CLKYLVLANMLMESEVNPFDG--QEAKPYKNDPEIL-AMTNLIAAYQRN------EIIE-FEKILKSNRKT-IMDDPFIR 331 (426)
Q Consensus 263 ~lky~~L~~lL~~~~~~~~~s--~~~~~~~~~~~~~-~l~~L~~af~~~------dl~~-f~~~l~~~~~~-l~~D~~l~ 331 (426)
+..+ +..++.......+.. ........+|... .+..|..++... +... +.+.+.-+... ...||.-.
T Consensus 276 a~~~--l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 276 AWNY--LKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp HHHH--HHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHH--HHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhH
Confidence 2222 233333211100000 0000011234433 455667766542 2232 46666667666 78899988
Q ss_pred HHHHHHHHHHHHH
Q 014350 332 NYIEDLLKNVRTQ 344 (426)
Q Consensus 332 ~~~~~L~~~l~~~ 344 (426)
..|..+...+...
T Consensus 354 ~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 354 EYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766543
No 99
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.69 E-value=0.0017 Score=53.00 Aligned_cols=116 Identities=9% Similarity=0.143 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...+.+++|..++++|+|++++++|++.+... |+ +.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----------------------p~-~~-------------------- 42 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----------------------PS-NI-------------------- 42 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46778899999999999999999998887663 33 10
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
....++|.+|...|+|++|.+.+++.......... + -......+......+...+++.+|...++++....
T Consensus 43 ----~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 43 ----TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA--D---YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch--h---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 12458899999999999999999998876543211 1 13345667777788999999999999999886543
Q ss_pred ccCCChhHHHHH
Q 014350 213 SAIPHPRIMGII 224 (426)
Q Consensus 213 ~~~~~p~~~~~i 224 (426)
++|.+...+
T Consensus 114 ---~~~~~~~~l 122 (127)
T 4gcn_A 114 ---RDPELVKKV 122 (127)
T ss_dssp ---CCHHHHHHH
T ss_pred ---cCHHHHHHH
Confidence 356554433
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.68 E-value=0.0016 Score=51.60 Aligned_cols=117 Identities=19% Similarity=0.324 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~ 109 (426)
+++++|++.|++.++..+++ ..++..++.++...|+++++.+++....... |+
T Consensus 15 ~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~ 67 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PR 67 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TT
T ss_pred CcHHHHHHHHHHHHHcCCcc----hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------------CC
Confidence 45666666666666554432 3345556666666666666666665544331 11
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 110 ~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
+. .....+|.++...|++++|.+.+.+....... + .+.+...+
T Consensus 68 -~~------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la 110 (136)
T 2fo7_A 68 -SA------------------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----S-------AEAWYNLG 110 (136)
T ss_dssp -CH------------------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHH
T ss_pred -ch------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----C-------hHHHHHHH
Confidence 00 01235566666677777777777666654211 1 12333344
Q ss_pred HHHHhhcCHHHHHHHHHHHHh
Q 014350 190 QMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~ 210 (426)
+++...|++.+|...++.+..
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHc
Confidence 556666667666666665543
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.66 E-value=0.00077 Score=71.71 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=112.6
Q ss_pred cCCCCHHHHHHHHHHHh--------cCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 27 LVETDPEGALAGFAEVV--------AMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii--------~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
+..+++++|++.|.+.+ +.++++ ..++..++.++.+.|+++++.+.+.+.+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES----VELPLMEVRALLDLGDVAKATRKLDDLAERV-------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc----hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------------
Confidence 67889999999999999 554433 5678889999999999999999999887764
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
|+ +. .....+|.++...|++++|.+.+++......+ +
T Consensus 464 ---------p~-~~------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~---- 500 (681)
T 2pzi_A 464 ---------GW-RW------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-----E---- 500 (681)
T ss_dssp ---------CC-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----C----
T ss_pred ---------cc-hH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C----
Confidence 33 10 12457888888899999999999888877431 1
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+.+.....++...|++.+ ...++++....+.. + ..+...|.++...++|.+|...|..+..
T Consensus 501 ---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~----~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 501 ---LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--I----SAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp ---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred ---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--H----HHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 2344455567888888888 88888876654221 1 2445567788888999998888877653
No 102
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.65 E-value=0.0015 Score=69.98 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++.+++.+|.++|++++|.++|++.+... |+ +.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-----------------------P~-~~-------------------- 43 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------------PE-FA-------------------- 43 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------SC-CH--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 36789999999999999999999999887774 44 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
....+||.++.+.|++++|.+.+++....-.+ ..+.+.....++...|++.+|...++++..+.
T Consensus 44 ----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 44 ----AAHSNLASVLQQQGKLQEALMHYKEAIRISPT------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 02568999999999999999999999887321 23566677788999999999999999997764
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
... +..+...|.++...++|.+|..+|..+.+
T Consensus 108 P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 108 PAF------ADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 321 22445567888899999999999999975
No 103
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.65 E-value=0.00051 Score=66.39 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++.+|++.|+|+++.+.|.+.+... +... +...+...+ ..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~-------------------~~~~~~~~~-------------~~ 192 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYES-------------------SFSNEEAQK-------------AQ 192 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCC-------------------CCCSHHHHH-------------HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccc-------------------cCChHHHHH-------------HH
Confidence 46788999999999999999999999998886 4321 100111111 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+..++|.++...|+|++|...+++....... ....+.....++...|++.+|...++++..+.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 122345679999999999999999999999887321 23455666788999999999999999997764
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHH-HHHHHHhhh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAAT-DFFEAFKNY 252 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~-~f~ea~~~~ 252 (426)
+.. + ..+...|.++...+++.+|.+ .|...|..+
T Consensus 261 P~~--~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 261 PNN--K----AAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SSC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 2 233445666777888888844 444445443
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.65 E-value=0.0019 Score=54.52 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++..+++ ..++..++.++...|+++++.+++.......
T Consensus 54 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------- 106 (186)
T 3as5_A 54 KTGAVDRGTELLERSLADAPDN----VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN----------------------- 106 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------
Confidence 3568999999999999887643 4567889999999999999999998876653
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
|+ +. .....+|.++...|++++|.+.+.+....... + .+.+..
T Consensus 107 ~~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~ 149 (186)
T 3as5_A 107 PI-NF------------------------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-----E-------GKVHRA 149 (186)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHH
T ss_pred cH-hH------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-----c-------hHHHHH
Confidence 22 00 12457788899999999999999998877421 1 245556
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
.+.++...|++.+|...++++....+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 66788899999999999998866554
No 105
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.59 E-value=0.0015 Score=56.01 Aligned_cols=121 Identities=12% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++...+... +....
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~----------------- 79 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAE----------------- 79 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHH-----------------
T ss_pred hccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH-----------------
Confidence 4567999999999999888754 4678899999999999999999999888775 22100
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH-HHHhccH--HHHHHHHHHHHhhcccCCCCcchhhhhhHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEY--GRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~-~~~~g~~--~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~ 184 (426)
....+|.+ +...|++ ++|...+.+....... + .+.
T Consensus 80 ------------------------------~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~ 117 (177)
T 2e2e_A 80 ------------------------------LYAALATVLYYQASQHMTAQTRAMIDKALALDSN-----E-------ITA 117 (177)
T ss_dssp ------------------------------HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-----C-------HHH
T ss_pred ------------------------------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-----c-------HHH
Confidence 12345555 5566666 6666666666655221 1 123
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 185 YAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 185 ~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
+.....++...|++.+|...++++....
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 3344456666677777766666665443
No 106
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.0023 Score=63.64 Aligned_cols=203 Identities=9% Similarity=0.003 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHhcCCc----c-chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEP----E-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN---YSEKCINN 99 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~----~-~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~---~~~k~v~~ 99 (426)
.++++++|++.|++.++..+ + .......++.+++.+|...|+++++.+++.+.+... +..... ....+...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~-~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC-EKFSSPYRIESPELDCE 141 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCSSCCCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-HhcccccchhhHHHHHH
Confidence 36789999999999887532 1 122346778899999999999999999999998875 332111 11122211
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHH---HHhccHHHHHHHHHHHHhhcccCCCCcchh
Q 014350 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIW---FDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (426)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~---~~~g~~~~A~~ll~el~~~~~~~~~~~d~~ 176 (426)
....+......+.+...+.++.+++. + .+. ......++.++ ...|++++|.+.+++....... +.
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~-~--p~~---~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-----~~- 209 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEK-K--PKN---PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-----NQ- 209 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHH-S--TTC---HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-----CH-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHh-C--CCC---HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-----ch-
Confidence 11111100001133444444444431 1 111 11223344443 3446667788888777666321 21
Q ss_pred hhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 177 KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 177 ~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.....+.....+++...+++.+|...++++....+. .+ ......|.++...++|.+|...|..+.+.
T Consensus 210 --~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~--~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 210 --YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG--VT----DVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp --HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc--HH----HHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 222222223334555667888899988888655322 12 23345678888899999999999998764
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.56 E-value=0.00055 Score=56.09 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
.++++++|++.|.+.++.+|.+ ..++..++.+|...|+++++.+.+...+..-
T Consensus 25 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------- 77 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLD----------------------- 77 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-----------------------
Confidence 3456777777777777766543 4556677777777777777777776665542
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
|+ +.....++|.++...|++++|.+.+++.....
T Consensus 78 p~-------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 78 SK-------------------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TT-------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hh-------------------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 22 11235689999999999999999999998874
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.55 E-value=0.0022 Score=56.36 Aligned_cols=140 Identities=17% Similarity=0.061 Sum_probs=97.6
Q ss_pred hHHHHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014350 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (426)
Q Consensus 18 ~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (426)
+..|..|... ..+++++|++.|+++++. ...++..++.+|...|+++++.+++...+...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------ 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 3445555544 356899999999998622 24688999999999999999999998876653
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcch-
Q 014350 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ- 175 (426)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~- 175 (426)
|+ +. .....+|.++...|++++|.+.+++............-.
T Consensus 68 -----------~~-~~------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 111 (213)
T 1hh8_A 68 -----------KH-LA------------------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111 (213)
T ss_dssp -----------TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred -----------cc-ch------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 22 00 124688999999999999999999998875432100000
Q ss_pred ---hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 176 ---KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 176 ---~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.......+.+.....++...|++.+|...++++....
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 0001234666666777888888888888888776553
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.55 E-value=0.0066 Score=47.91 Aligned_cols=130 Identities=17% Similarity=0.257 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl 134 (426)
.++..++.++...|+++++.+++....... |+ +.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~---------------------- 35 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PR-SA---------------------- 35 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------TT-CH----------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----------------------Cc-ch----------------------
Confidence 356778999999999999999888775542 22 00
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
.....+|.++...|++++|...+.+....... + ...+...+.++...|++.+|...++.+....+.
T Consensus 36 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 36 --EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-----S-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred --hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-----c-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 01346788899999999999999998876321 1 234445567889999999999999988654321
Q ss_pred CCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 215 ~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
++ ......|.++...+++.+|...|.++..
T Consensus 102 --~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 102 --SA----EAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp --CH----HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --Ch----HHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 12 2334457778889999999999988765
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.48 E-value=0.00051 Score=59.28 Aligned_cols=154 Identities=9% Similarity=0.026 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|+..|+++++.+|++ ..++..++.++...|+++++.+.+...+... + .+ ..... ...+......
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~--~~~~~-~~~~~~~~~~ 88 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSR----GDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DN--SYKSL-IAKLELHQQA 88 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTS----HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CH--HHHHH-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-Ch--HHHHH-HHHHHHHhhc
Confidence 4568999999999999887654 5778899999999999999999998876654 3 11 11111 1111111110
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.. . .....++.+++ ... -.......+|.++...|++++|...++++....... .+ .+.+..
T Consensus 89 ~~--~-~a~~~~~~al~---~~P---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-------~~a~~~ 149 (176)
T 2r5s_A 89 AE--S-PELKRLEQELA---ANP---DNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QD-------GEVKKT 149 (176)
T ss_dssp TS--C-HHHHHHHHHHH---HST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TT-------THHHHH
T ss_pred cc--c-hHHHHHHHHHH---hCC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---Ch-------HHHHHH
Confidence 11 1 12233333332 111 122445789999999999999999999988774321 01 122333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~ 209 (426)
-..++...|+...|...++++.
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 3467778888888888877663
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.47 E-value=0.012 Score=48.78 Aligned_cols=94 Identities=6% Similarity=-0.016 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|.++...|++++|.+.+.+....... ....+.....++...|++.+|...++++....+. ++
T Consensus 50 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~ 115 (166)
T 1a17_A 50 YGNRSLAYLRTECYGYALGDATRAIELDKK------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DK 115 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CH
Confidence 445666666666666666666666655211 1123344445566666666666666666544221 11
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
.. ......+..+...++|.+|...+-.+
T Consensus 116 ~~--~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 116 DA--KMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHcccch
Confidence 11 11122223344455666665555444
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.45 E-value=0.0039 Score=54.69 Aligned_cols=135 Identities=12% Similarity=0.044 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl 134 (426)
..+..++..+...|+|+++.+++...+ + |+ .
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----------------------~--~~--~---------------------- 37 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----------------------D--PH--S---------------------- 37 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----------------------S--CC--H----------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----------------------C--CC--h----------------------
Confidence 345678889999999999998885441 0 11 0
Q ss_pred HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 135 ~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
.....+|.++...|++++|.+.+.+....... ..+.+.....++...|++.+|...++++....+.
T Consensus 38 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 38 --RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 12568899999999999999999998887321 2345566678899999999999999998765433
Q ss_pred CC----------ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 215 IP----------HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 215 ~~----------~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.. ........+...|.++...++|.+|..+|..+....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 22 111123456677888999999999999999997654
No 113
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.43 E-value=0.0031 Score=64.46 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=81.8
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP- 216 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~- 216 (426)
+..+||.+|...|+|++|..++++.........|.+. ......+.....+|...|++.+|..++++|..+.....
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H----p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN----AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4679999999999999999999987765444334322 33555666677889999999999999999987776533
Q ss_pred --ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 217 --HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 217 --~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
||.+.. +....+..+...+.|++|-..|..+-+
T Consensus 429 ~~Hp~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 429 PSHPITKD-LEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 576554 445666777788889998888887743
No 114
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.42 E-value=0.00077 Score=67.83 Aligned_cols=103 Identities=10% Similarity=0.107 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
.+++++|+..|++.++... ++-..+.+++.+|+.+|..+|+|++|.+++++.+...+.. +
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~----------------l 374 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH----------------Y 374 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------S
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----------------c
Confidence 4689999999999998643 2345689999999999999999999999999998886221 2
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCC
Q 014350 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~ 171 (426)
. |+. .+ +. ....+||.+|...|+|++|.+++++........-|
T Consensus 375 G--~~H-p~-----------~a----------~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 375 P--VYS-LN-----------VA----------SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp C--SSC-HH-----------HH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred C--CCC-hH-----------HH----------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 2 221 10 11 12569999999999999999999988776544334
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.42 E-value=0.0038 Score=50.93 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
..++|..++..|+|++|.+.+++....... -.+.+......+..+|++.+|...++++..+.+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 568899999999999999999998877321 23466666788999999999999999987764321
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
...+...|.++...++|.+|...|..+.+
T Consensus 81 ---~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 81 ---IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23456678889999999999999999976
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.32 E-value=0.0021 Score=60.44 Aligned_cols=154 Identities=8% Similarity=-0.003 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.+|++ ..++..++.++...|+++++.+.+..+.... +. .........+......
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~----~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQN----GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QD----TRYQGLVAQIELLXQA 199 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CS----HHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cc----hHHHHHHHHHHHHhhc
Confidence 4678999999999999998865 5678999999999999999999999886654 32 1122222222222211
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.. +.....++.+++ .. --.......||.++...|++++|...+.++...-.+. + -.+....
T Consensus 200 ~~---~~a~~~l~~al~---~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~------~~~a~~~ 260 (287)
T 3qou_A 200 AD---TPEIQQLQQQVA---EN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----A------DGQTRXT 260 (287)
T ss_dssp TS---CHHHHHHHHHHH---HC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----G------GGHHHHH
T ss_pred cc---CccHHHHHHHHh---cC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----c------cchHHHH
Confidence 11 112222332222 11 1122446799999999999999999999998874321 0 1123334
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~ 209 (426)
...++...|+...|...++++.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 4456777888887777776653
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.29 E-value=0.022 Score=53.59 Aligned_cols=191 Identities=10% Similarity=0.067 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhc-CCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCC
Q 014350 32 PEGALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ 110 (426)
Q Consensus 32 ~~~Ai~~~~~ii~-~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~ 110 (426)
+++|++.|++.++ .+++. ..+....+.++...|+++++.+.|...+... +.... .+............+
T Consensus 80 ~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~~~~~~~~~~~~- 149 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPT----LVYIQYMKFARRAEG- 149 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTH----HHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCcc----HHHHHHHHHHHHhcC-
Confidence 3899999999999 56644 3466788999999999999999999998864 43211 122222222221111
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH-hccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD-MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~-~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~ 189 (426)
.+.....++.+++. . .....+| ...+.+... .|++++|.+++++......+ + .+++..-+
T Consensus 150 -~~~A~~~~~~a~~~-~-p~~~~~~----~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~~ 210 (308)
T 2ond_A 150 -IKSGRMIFKKARED-A-RTRHHVY----VTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYI 210 (308)
T ss_dssp -HHHHHHHHHHHHTS-T-TCCTHHH----HHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHH
T ss_pred -HHHHHHHHHHHHhc-C-CCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c-------HHHHHHHH
Confidence 33344444443331 0 0111223 233444332 69999999999998887531 1 24455556
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 190 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 190 rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
.++...|++.+|+.+++++.... ..+|.-...++..-+.+....|++.+|...+..+...+.
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 77888999999999999886531 012322234555555666678999999988888876554
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.23 E-value=0.011 Score=46.59 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-CC
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PH 217 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~-~~ 217 (426)
...+|..+...|++++|...+.+....... ....+.....++...|++.+|...++++....+.. .+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT------------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 568999999999999999999999887421 12455556678889999999999999987765432 23
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
+......+...|.++...++|.+|..+|..+...
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3333556677788999999999999999998764
No 119
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.23 E-value=0.0041 Score=62.42 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHhcCCc----cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~----~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
++++++|++.+++.++... ++-..+.+++.+|+.+|..+|+|++|.+++.+.+... .. .+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~-~~---------------~l 363 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY-RI---------------FF 363 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH---------------HS
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH-HH---------------Hc
Confidence 5689999999999998754 3345689999999999999999999999999998886 22 12
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCC
Q 014350 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~ 172 (426)
. |+. .. + .....+||.+|...|+|++|.+++++........-|.
T Consensus 364 g--~~H-p~-----------~----------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 364 P--GSH-PV-----------R----------GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp C--SSC-HH-----------H----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred C--CCC-hH-----------H----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 1 221 10 1 1125799999999999999999999887765544443
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.23 E-value=0.0066 Score=62.54 Aligned_cols=124 Identities=11% Similarity=0.033 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++.++++ ..++..++.+|...|+++++.+++.+.+... |
T Consensus 36 ~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p 88 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAAVLLQQASDAA-----------------------P 88 (568)
T ss_dssp HTCHHHHHHHHHHHHTTSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------------------C
Confidence 468999999999999988754 5678899999999999999999998887764 3
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ +. .....+|.++...|++++|.+.+++......+ + .+.+...
T Consensus 89 ~-~~------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~l 131 (568)
T 2vsy_A 89 E-HP------------------------GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-----E-------PYITAQL 131 (568)
T ss_dssp T-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHH
T ss_pred C-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHH
Confidence 2 00 02458899999999999999999999887421 1 2344555
Q ss_pred HHHHHhh---cCHHHHHHHHHHHHhhhccCC
Q 014350 189 IQMYTET---KNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 189 ~rl~~~~---~d~~kak~~l~~a~~i~~~~~ 216 (426)
..++... |++.+|...++++....+...
T Consensus 132 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 132 LNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 6678888 999999999999877665443
No 121
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.22 E-value=0.0046 Score=49.41 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.++++..+++ .+...++..++.++...|+++++.+++...+...
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----------------------- 69 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY----------------------- 69 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----------------------
Confidence 3568999999999999887743 3346788999999999999999999999887764
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
|+.. .. ......+|.++...|++++|.+.++++.....
T Consensus 70 p~~~--~~--------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 70 PTHD--KA--------------------AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp TTST--TH--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCCc--cc--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 2210 00 01256889999999999999999999988753
No 122
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.22 E-value=0.014 Score=46.50 Aligned_cols=102 Identities=10% Similarity=0.011 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|+|++|.+.+.++.....+ + ....+.+......+...|++.+|...++++....+.. +
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--~ 73 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-----G----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH--D 73 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----S----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-----C----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC--c
Confidence 467899999999999999999999887432 1 2233556666778999999999999999886653221 1
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.........|.++...++|.+|...|..+...+
T Consensus 74 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 -KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 122345566888889999999999999988765
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0033 Score=50.49 Aligned_cols=87 Identities=13% Similarity=0.232 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.+.++.++++ ..++..++.++...|+++++.+.+...+...
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------- 68 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKD----------------------- 68 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------
Confidence 4568999999999999887754 4678889999999999999999998877664
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
|+ . ......+|.++...|++++|.+.+++.....
T Consensus 69 p~--~-----------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 69 PN--F-----------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp TT--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CC--c-----------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 33 0 0125688999999999999999999998875
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.15 E-value=0.0031 Score=67.04 Aligned_cols=118 Identities=8% Similarity=0.036 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|.+.++.++++ ..++..++.++...|+++++.+.|.+.+... |
T Consensus 446 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------------P 498 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAERVGWR----WRLVWYRAVAELLTGDYDSATKHFTEVLDTF-----------------------P 498 (681)
T ss_dssp HTCHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----------------------T
T ss_pred cCCHHHHHHHHHHHhccCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 467999999999999887754 5688899999999999999999999988875 3
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+.. .....+|.++...|+|++ .+.+++......+ -.+.+...
T Consensus 499 ~~~-------------------------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------------~~~a~~~l 540 (681)
T 2pzi_A 499 GEL-------------------------APKLALAATAELAGNTDE-HKFYQTVWSTNDG------------VISAAFGL 540 (681)
T ss_dssp TCS-------------------------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------------CHHHHHHH
T ss_pred CCh-------------------------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------------hHHHHHHH
Confidence 300 014578888999999998 8888888776321 12355666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i 211 (426)
.+++...|++.+|...++++...
T Consensus 541 g~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 541 ARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHHHcCCHHHHHHHHHhhccc
Confidence 67888999999999988877543
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.15 E-value=0.014 Score=48.85 Aligned_cols=113 Identities=10% Similarity=0.007 Sum_probs=80.9
Q ss_pred HHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHH
Q 014350 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (426)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (426)
.|+++++.++++ ..++..++..+...|+++++.+.+...+..- |+ +.
T Consensus 9 ~~~~al~~~p~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~----- 55 (148)
T 2vgx_A 9 TIAMLNEISSDT----LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-----------------------HY-DS----- 55 (148)
T ss_dssp SHHHHTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH-----
T ss_pred hHHHHHcCCHhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------------------cc-cH-----
Confidence 455666665433 5667888999999999999999988776653 33 00
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcC
Q 014350 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (426)
Q Consensus 118 ~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d 197 (426)
.....+|.++...|+|++|.+.+++......+ + .+.+.....++...|+
T Consensus 56 -------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~-------~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 56 -------------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-----E-------PRFPFHAAECLLQXGE 104 (148)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------chHHHHHHHHHHHcCC
Confidence 01357888889999999999999988877421 1 1344455677888999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 014350 198 NKKLKQLYQKALAIKSA 214 (426)
Q Consensus 198 ~~kak~~l~~a~~i~~~ 214 (426)
+.+|...++++....+.
T Consensus 105 ~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 105 LAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 99999999888776543
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.14 E-value=0.0098 Score=49.06 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=77.8
Q ss_pred HHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHH
Q 014350 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (426)
Q Consensus 38 ~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~ 117 (426)
.|+++++.++++ ..++..++..+...|+++++.+++...+... |+ +.
T Consensus 6 ~l~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~----- 52 (142)
T 2xcb_A 6 TLAMLRGLSEDT----LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-----------------------HY-DA----- 52 (142)
T ss_dssp ---CCTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH-----
T ss_pred hHHHHHcCCHHH----HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-----------------------Cc-cH-----
Confidence 344455554432 5567788899999999999999988776653 33 00
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcC
Q 014350 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (426)
Q Consensus 118 ~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d 197 (426)
.....+|.++...|+|++|...+++....... + .+.+.....++...|+
T Consensus 53 -------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 53 -------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDIN-----E-------PRFPFHAAECHLQLGD 101 (142)
T ss_dssp -------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHHHHHHHHTTC
T ss_pred -------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------cHHHHHHHHHHHHcCC
Confidence 01357788888899999999999888877421 1 1344455667888899
Q ss_pred HHHHHHHHHHHHhhhcc
Q 014350 198 NKKLKQLYQKALAIKSA 214 (426)
Q Consensus 198 ~~kak~~l~~a~~i~~~ 214 (426)
+.+|...++++....+.
T Consensus 102 ~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 102 LDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999998888776543
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.13 E-value=0.012 Score=49.97 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++..+++.|+++++.+.|...+... |+ +.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----------------------P~-~~-------------------- 70 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-----------------------FY-NV-------------------- 70 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------
Confidence 46788999999999999999999999887774 33 10
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....||..+...|+|++|.+.+++.....++ + .+.+......+...|++.+|...++++....
T Consensus 71 ----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-----~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 71 ----DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-----D-------YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----C-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----C-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 01457889999999999999999999887432 1 1345555678889999999999999887654
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.03 E-value=0.0098 Score=47.25 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++.++++ ..++..++.++...|+++++.+++...+... |
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----------------------~ 81 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLE-----------------------P 81 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred cCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------C
Confidence 345666666666666555432 3455566666666666666666665554432 1
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
+ .......+|.++...|++++|.+.+.+.....
T Consensus 82 ~-------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 82 T-------------------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp T-------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-------------------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 1 11235688999999999999999999998874
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.033 Score=44.37 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..++..|+|++|.+.+.+....... -.+.+......+...|++.+|...++++..+.+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 71 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--- 71 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---
Confidence 468899999999999999999999887421 12566666778999999999999999987764321
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
...+...|.++...++|.+|...|..+....
T Consensus 72 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 ---VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2345567888899999999999999997643
No 130
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.01 E-value=0.0039 Score=49.66 Aligned_cols=90 Identities=9% Similarity=0.106 Sum_probs=69.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++...++. ....++..++.+|...|+++++.+++.+.+... |
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------p 58 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----------------------P 58 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred CCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------C
Confidence 4678999999999998843221 246889999999999999999999999887774 4
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
+ +. .....+|..+...|++++|.+.+++......
T Consensus 59 ~-~~------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 59 N-HQ------------------------ALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp T-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred C-ch------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3 00 1246789999999999999999999988753
No 131
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.99 E-value=0.035 Score=46.55 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
....+...|..+++.|+|+++.++|...+... +.... ...|+ .+.... ..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~-~~~~~--------------~~~~~--~~~~~~-------------~~ 59 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRL-DTLIL--------------REKPG--EPEWVE-------------LD 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHH--------------TSCTT--SHHHHH-------------HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcc--------------cCCCC--HHHHHH-------------HH
Confidence 47789999999999999999999999998886 33110 11232 111100 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+..++|..|...|+|++|...+.+....... ....+......+...|++..|...++++..+.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 223345679999999999999999999999887321 23456666788999999999999999987764
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.99 E-value=0.019 Score=48.30 Aligned_cols=97 Identities=7% Similarity=0.002 Sum_probs=77.7
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|..++..|+|++|.+.+++....... ...++.....++...|++.+|...++++..+.+..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 78 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA------------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-- 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Confidence 4578999999999999999999999887421 23456666788999999999999999987764321
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
...+...|.++...++|.+|..+|..+....
T Consensus 79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2345567888899999999999999997644
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.97 E-value=0.027 Score=47.69 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=78.1
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.....+|..+...|+|++|...++++...-+. -.+.+.....++...|++.+|...++++..+.+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~- 103 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND- 103 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-
Confidence 44679999999999999999999999887321 12455566678999999999999999998776442
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
|. .+...|..+...++|.+|...|..+....
T Consensus 104 -~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 -YT----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -CH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -cH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 34566888889999999999999997643
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.96 E-value=0.012 Score=56.73 Aligned_cols=114 Identities=7% Similarity=0.031 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccc-----------hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEK-----------AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~-----------~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (426)
..+++++|++.|++.++..++. ......++.+++.+|.+.|+|+++.+++...+...
T Consensus 159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------------ 226 (336)
T 1p5q_A 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD------------ 226 (336)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 4578999999999999987643 12235788999999999999999999998887764
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchh
Q 014350 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (426)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~ 176 (426)
|+ +. ....++|..+...|++++|...+++....... +
T Consensus 227 -----------p~-~~------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~-- 263 (336)
T 1p5q_A 227 -----------SN-NE------------------------KGLSRRGEAHLAVNDFELARADFQKVLQLYPN-----N-- 263 (336)
T ss_dssp -----------TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----C--
T ss_pred -----------CC-cH------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----C--
Confidence 33 00 12568899999999999999999999888431 1
Q ss_pred hhhhHHHHHHHHHHHHHhhcCHHHH
Q 014350 177 KGSQLLEVYAIEIQMYTETKNNKKL 201 (426)
Q Consensus 177 ~~~~l~e~~l~e~rl~~~~~d~~ka 201 (426)
.+.+.....++...+++.++
T Consensus 264 -----~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 264 -----KAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 12344445566777777766
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.95 E-value=0.04 Score=46.26 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
....+..++.+++..|+|+++.++|...+... |+ +.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~-------------------- 45 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------------------PA-NP-------------------- 45 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------------TT-CH--------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------Cc-CH--------------------
Confidence 57788999999999999999999998887764 32 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+|.++...|+|++|...+++....... ....+.....++...|++.+|...++++..+.
T Consensus 46 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 46 ----IYLSNRAAAYSASGQHEKAAEDAELATVVDPK------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12457889999999999999999998887321 13455666678889999999999999887766
Q ss_pred ccC
Q 014350 213 SAI 215 (426)
Q Consensus 213 ~~~ 215 (426)
+..
T Consensus 110 p~~ 112 (164)
T 3sz7_A 110 GNG 112 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.95 E-value=0.0039 Score=50.43 Aligned_cols=86 Identities=14% Similarity=-0.012 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|+..|+++++.++++ ..++..++.++...|+++++.+.+.+.+...
T Consensus 29 ~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------- 81 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLD----------------------- 81 (121)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 4568999999999999988765 5677889999999999999999998887774
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
|+ +. .....||.++...|++++|...+++....
T Consensus 82 P~-~~------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 82 PK-DI------------------------AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 00 01457899999999999999999988765
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.94 E-value=0.016 Score=45.60 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|.++++..+++ ..++..++.++...|+++++.+++...+... |
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------------~ 77 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICID-----------------------P 77 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred ccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----------------------c
Confidence 346777777777776665433 3456667777777777777777666655442 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
+ . ......+|.++...|++++|...+++.....
T Consensus 78 ~--~-----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 78 A--Y-----------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp T--C-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred c--C-----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 2 0 1124688999999999999999999998874
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.91 E-value=0.18 Score=44.55 Aligned_cols=178 Identities=7% Similarity=0.079 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCC--C
Q 014350 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS--Q 110 (426)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~--~ 110 (426)
.+|++.|++..+.. ...++..++.+|...++++++.++|++....- -..+...+...+.. .+ .
T Consensus 3 ~eA~~~~~~aa~~g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCC
Confidence 56888888886552 26788999999999999999999999886542 12334445555544 21 1
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHH
Q 014350 111 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (426)
Q Consensus 111 ~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l 186 (426)
+.+...++++.+.+ .-......+||.+|.. .+++++|.+++++....-. . ....+.+.
T Consensus 68 ~~~~A~~~~~~A~~--------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-----~-----~~~~~a~~ 129 (212)
T 3rjv_A 68 DYPQARQLAEKAVE--------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-----S-----DAAVDAQM 129 (212)
T ss_dssp CHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-----S-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-----C-----cchHHHHH
Confidence 34555565555433 1223456799999998 8999999999998866521 0 01234444
Q ss_pred HHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH------hhcHHHHHHHHHHHHh
Q 014350 187 IEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA------ERQWADAATDFFEAFK 250 (426)
Q Consensus 187 ~e~rl~~~----~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~------~~~y~~A~~~f~ea~~ 250 (426)
....+|.. .+|+.+|...++++.... .+|.- ....|.++.. .+|+.+|..+|..+.+
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~a----~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSLS---RTGYA----EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHTS---CTTHH----HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcC---CCHHH----HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 44566777 789999999999885441 12221 2233444443 3389999999999855
No 139
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.90 E-value=0.0023 Score=65.01 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
.++++++|++.|++.++.++++ ..++..++.+|.+.|+++++.+++.+.+...
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------------- 70 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELD----------------------- 70 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------------
T ss_pred HhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------
Confidence 4568999999999999987754 6788999999999999999999998876653
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
|+ +. ....++|.+|...|++++|.+.+++......+ +. ..-..+.
T Consensus 71 p~-~~------------------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~~-----~~~~~l~ 115 (477)
T 1wao_1 71 KK-YI------------------------KGYYRRAASNMALGKFRAALRDYETVVKVKPH-----DK-----DAKMKYQ 115 (477)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----CT-----THHHHHH
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CH-----HHHHHHH
Confidence 33 00 12468899999999999999999999887432 11 1122233
Q ss_pred HHHHHHhhcCHHHHHHHHHH
Q 014350 188 EIQMYTETKNNKKLKQLYQK 207 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~ 207 (426)
.+..+...+++.+|...+++
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 33446777889999888873
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.89 E-value=0.054 Score=54.38 Aligned_cols=145 Identities=10% Similarity=0.116 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++...+..+++.|+|++|...|.+.+... +... +...+...+ ..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~-------------------~~~~~~~~~-------------~~ 313 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEY-------------------GLSEKESKA-------------SE 313 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCC-------------------SCCHHHHHH-------------HH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccc-------------------cCChHHHHH-------------HH
Confidence 46688899999999999999999999998876 4321 100111110 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+..++|..|...|+|++|...+.+....... ....+......+..++++.+|...++++..+.
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 223345789999999999999999999999887321 23456666788999999999999999997764
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
+... ..+...|.++...+++.+|.+..+..
T Consensus 382 P~~~------~a~~~l~~~~~~~~~~~~a~~~~~~~ 411 (457)
T 1kt0_A 382 PQNK------AARLQISMCQKKAKEHNERDRRIYAN 411 (457)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 13334456666777887777655443
No 141
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.88 E-value=0.0091 Score=50.06 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
.+.||.+|.+.|+|++|.+.+++......+ -.+.+.....++...|++.+|...++++..+.+. ++
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~ 99 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQER------------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT--QK 99 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--CH
Confidence 468999999999999999999999887421 2345666677899999999999999999776432 12
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHH-HHh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFE-AFK 250 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~e-a~~ 250 (426)
..+...|.++...+++.+|...|++ +.+
T Consensus 100 ----~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 100 ----DLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp ----HHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2344557778888999998888764 543
No 142
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.88 E-value=0.07 Score=50.03 Aligned_cols=161 Identities=11% Similarity=0.086 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|++.|++.++.++.+.. .+....+.++.+.|+++++.+.|...+... +......... ..++.. ...
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~---a~~~~~-~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA---ALMEYY-CSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH---HHHHHH-TSC
T ss_pred cCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH---HHHHHH-HcC
Confidence 45789999999999998775421 267788999999999999999999988764 3222222111 111111 112
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+.+.....++.+++.. ..+. .+...++.++...|++++|..++++....+.-+ . ....+++..-
T Consensus 184 --~~~~A~~~~~~al~~~--p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~----p----~~~~~l~~~~ 247 (308)
T 2ond_A 184 --DKSVAFKIFELGLKKY--GDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP----P----EKSGEIWARF 247 (308)
T ss_dssp --CHHHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC----G----GGCHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhC--CCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC----H----HHHHHHHHHH
Confidence 2556667777666631 1122 334688999999999999999999998863211 0 1123444555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 189 IQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
+++....|++..|..+++++....+
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 5677788999999999998876544
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.87 E-value=0.023 Score=45.68 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|..+...|+|++|...+++....... ..+++.....++...|++.+|...++++....+. +
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~ 76 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--S 76 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--h
Confidence 3568999999999999999999998887421 1345666677889999999999999988765432 1
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
...+...|.++...++|.+|...|..+.....
T Consensus 77 ----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 77 ----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 23455678888899999999999999976543
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.85 E-value=0.055 Score=44.38 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..++..|+|++|...++++...... + .+.+.....++...|++.+|...++++....+. +|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~ 86 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-----D-------ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EP 86 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-----c-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 568899999999999999999998877321 1 234555567889999999999999998776532 22
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
. .+...|.++...++|.+|...|..+....
T Consensus 87 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 87 R----FPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 34556888889999999999999987644
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.83 E-value=0.011 Score=47.69 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.+.++.++++ ..++..++.++...|+++++.+.+...+...
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------- 73 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELD----------------------- 73 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------
Confidence 3557888888888888777643 4567778888888888888888777766653
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
|+ + ......+|.++...|++++|...+++......+
T Consensus 74 p~-~------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 GQ-S------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TT-C------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ch-h------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 22 0 112568899999999999999999999887543
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.015 Score=47.13 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=72.9
Q ss_pred HHhhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 014350 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 99 (426)
Q Consensus 21 ~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~ 99 (426)
+..|... ..+++++|++.|++.++..+++. ....++..++.+|...|+++++.+++...+...
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 95 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------------- 95 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---------------
Confidence 3344433 45689999999999988876431 236788889999999999999998888776653
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 100 IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 100 il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
|+ +. .....+|.++...|++++|...+++.....
T Consensus 96 --------~~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 96 --------GG-DV------------------------KALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp --------SC-CH------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --------cc-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 32 00 124578899999999999999999998874
No 147
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.79 E-value=0.25 Score=49.52 Aligned_cols=177 Identities=10% Similarity=0.026 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
.+|+++|++.|++..+.. + ..+...++.+|.. .++++++.++|.+....- . ......+...+
T Consensus 56 ~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~------~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG--Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L------PQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C------HHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C------HHHHHHHHHHH
Confidence 578999999999997652 1 5688899999999 999999999999886542 1 11222233333
Q ss_pred cCCC--CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 105 SGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.... ..+.+...++++.+.+. -.......||.+|.. .+++++|.+.+++....- +.
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-------~~--- 183 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQ--------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-------NV--- 183 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CH---
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CH---
Confidence 3211 11244555555544331 123445678888887 778888888888775541 11
Q ss_pred hhHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH----hhcHHHHHHHHHHHH
Q 014350 179 SQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAF 249 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~----~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~ 249 (426)
+.+.....++.. .+|+.+|...++++.... +|.. ....|.++.. .+++.+|...|..+.
T Consensus 184 ----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a----~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 184 ----WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELG----QLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp ----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 122222344554 677888888777764321 2211 1122333333 556666666666654
No 148
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.76 E-value=0.072 Score=54.08 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=116.9
Q ss_pred HHHHHHHHHhc-CCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCCh
Q 014350 34 GALAGFAEVVA-MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (426)
Q Consensus 34 ~Ai~~~~~ii~-~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (426)
+|++.|++.++ ..++. .......+.++.+.|+++++.+.|...+... +... +......+.......+ .
T Consensus 304 ~A~~~~~~Al~~~~p~~----~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~~~~~~~~~~~~--~ 372 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN----MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDP----TLVYIQYMKFARRAEG--I 372 (530)
T ss_dssp HHHHHHHHHTTTTCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCH----HHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHhCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCc----hHHHHHHHHHHHHhcC--H
Confidence 89999999997 55543 4566778899999999999999999998864 3211 1122222222211001 2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH-HHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHH
Q 014350 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (426)
Q Consensus 113 ~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~-~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl 191 (426)
+.....++.+++. .. ....+....+.+ +...|++++|.+++++..+...+ + .+++..-+.+
T Consensus 373 ~~A~~~~~~Al~~---~~---~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-----~-------~~~~~~~~~~ 434 (530)
T 2ooe_A 373 KSGRMIFKKARED---AR---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHTC---TT---CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---cC---CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-----C-------HHHHHHHHHH
Confidence 2223333332221 11 111122233333 33589999999999999887531 1 2344555567
Q ss_pred HHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhh
Q 014350 192 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (426)
Q Consensus 192 ~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~ 253 (426)
....|+..+|+.+++++....+ .+|.-...++..-+.+....|+..++...+..+...+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHhCCCHhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 7889999999999999865422 13443344555445555667888888888888877664
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.027 Score=45.55 Aligned_cols=100 Identities=10% Similarity=-0.035 Sum_probs=77.7
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.....+|..+...|+|++|.+.+++...... ++ ......+......+...+++.+|...++++....+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 97 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-- 97 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--
Confidence 3456889999999999999999999987642 11 234566777778899999999999999988765322
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
+ ...+...|.++...++|.+|...|..+...
T Consensus 98 ~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 D----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 234456678888999999999999998763
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.016 Score=44.75 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|++.++.++.+ ..++..++.++...|+++++.+.+...+...
T Consensus 16 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------- 68 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----------------------- 68 (118)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----------------------
Confidence 3567899999999988877643 4577888889999999999988887776553
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
|+ +. .....+|.++...|++++|.+.+++.....
T Consensus 69 ~~-~~------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 69 PD-WG------------------------KGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cc-cH------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 22 00 124578899999999999999999988764
No 151
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.75 E-value=0.04 Score=43.19 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++.++...|+++++.+++...+... |+ +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~-~~-------------------- 38 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-----------------------PT-NM-------------------- 38 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------------Cc-cH--------------------
Confidence 35678889999999999999999998887653 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+...+|.++...|++++|...+.+......... .+ .......+.....++...|++.+|...++++....
T Consensus 39 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 39 ----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--ED---YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc--hh---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1245789999999999999999999988754321 11 12336677777888999999999999999887653
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.72 E-value=0.054 Score=45.15 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=75.3
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|..+...|+|++|...++++...... + .+.+.....++...|++.+|...++++....+..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 88 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-----D-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-- 88 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-----c-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--
Confidence 3568899999999999999999998877321 1 2344555678899999999999999997765322
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
|. .+...|.++...+++.+|...|..+....
T Consensus 89 ~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 89 PR----FPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ch----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 22 34556888899999999999999987643
No 153
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.72 E-value=0.23 Score=47.27 Aligned_cols=179 Identities=11% Similarity=0.048 Sum_probs=108.9
Q ss_pred HHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhH
Q 014350 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSL 114 (426)
Q Consensus 35 Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~ 114 (426)
|++.|++.++..+.. .-++.-++.++...|+++++++++...+..- |.
T Consensus 85 a~~~l~~l~~~~~~~----~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-----------------------~~----- 132 (310)
T 3mv2_B 85 NIEELENLLKDKQNS----PYELYLLATAQAILGDLDKSLETCVEGIDND-----------------------EA----- 132 (310)
T ss_dssp CCHHHHHTTTTSCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-----------------------CS-----
T ss_pred HHHHHHHHHhcCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----------------------CC-----
Confidence 455555555443211 2234578888888999999988887653321 10
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHh
Q 014350 115 LREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE 194 (426)
Q Consensus 115 ~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~ 194 (426)
...+.+...++.+++..|+.+.|.+.+++++..-. |..+...-+-+.+.++-+.+.
T Consensus 133 ------------------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~------d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 133 ------------------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE------DTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp ------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------cccccchHHHHHHHHHHHHHH
Confidence 00111256788999999999999999999987731 100112244466677766666
Q ss_pred hc--CHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhh-----cchhHHHHHHHH
Q 014350 195 TK--NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-----GNQRRIQCLKYL 267 (426)
Q Consensus 195 ~~--d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~-----~~~~~~~~lky~ 267 (426)
.| ++..|-.+++.... ..+++.....+ +. .++..|+|.+|...+......+.+. .++.-.+++..+
T Consensus 189 ~g~~~~q~A~~~f~El~~---~~p~~~~~~lL--ln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQ---TFPTWKTQLGL--LN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HTCSTTTHHHHHHHHHHT---TSCSHHHHHHH--HH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHH---hCCCcccHHHH--HH--HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 66 89999888887532 22221111111 11 6888999999999987654443221 134456678777
Q ss_pred HHHHHhhCC
Q 014350 268 VLANMLMES 276 (426)
Q Consensus 268 ~L~~lL~~~ 276 (426)
+.+..+.++
T Consensus 262 i~l~~~lgk 270 (310)
T 3mv2_B 262 ITLALMQGL 270 (310)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCh
Confidence 777776554
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.72 E-value=0.013 Score=44.86 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.++++.++.+ ..++..++.++...|+++++.+++...+...
T Consensus 18 ~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------- 70 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVI----------------------- 70 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----------------------
T ss_pred HhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------------
Confidence 4568999999999999887654 4567889999999999999999988776653
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHh-ccHHHHHHHHHHHHhhcc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~-g~~~~A~~ll~el~~~~~ 167 (426)
|+... ......+|.++... |++++|.+.+.++.....
T Consensus 71 ~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 71 EDEYN-----------------------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp CCTTC-----------------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred cccch-----------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 21000 01246889999999 999999999999987754
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.67 E-value=0.02 Score=53.35 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
..+++++|++.|.+.++.++++ ..++..++.+|...|+++++.+.+...+...
T Consensus 16 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------- 68 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELD----------------------- 68 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------------
Confidence 3567999999999999887754 4677889999999999999998887765543
Q ss_pred CCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
|+ +. .....+|..+...|++++|...+++......
T Consensus 69 p~-~~------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 69 GQ-SV------------------------KAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CC-CH------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 32 00 1246788889999999999998888877654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.62 E-value=0.056 Score=46.95 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
....+..++..++..|+|+++.++|.+.+... +.. |+........ ...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------~~~~~~~~~~------------~~~ 84 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHT-------------------EEWDDQILLD------------KKK 84 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTC-------------------TTCCCHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcc-------------------cccchhhHHH------------HHH
Confidence 46778889999999999999999999988875 321 1100000000 011
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+...+..++|..+...|+|++|...+.+....... ....+.....++...|++.+|...++++..+.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------------NVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 122345679999999999999999999999887321 12455666788999999999999999987664
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.62 E-value=0.038 Score=43.64 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=75.3
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.....+|..+...|++++|.+.+++....... ..+.+.....++...+++.+|...++++....+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--
Confidence 34578999999999999999999998776321 1345566677889999999999999988765322
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
++ ..+...|.++...++|.+|...|..+...
T Consensus 83 ~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 83 FI----KGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ch----HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 12 34556678888999999999999998764
No 158
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.59 E-value=0.33 Score=48.59 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLT 82 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~ 82 (426)
..|+++|++.|++..+... ..+...++.+|.. .++++++.+++.+...
T Consensus 200 ~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4567777777777665421 2345556666665 5666666666665544
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.58 E-value=0.089 Score=41.01 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=75.1
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.....+|..+...|++++|.+.+.+....... + ...+.....++...|++.+|...+.++....+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 78 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----N-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-- 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--
Confidence 34578999999999999999999999877421 1 245556667888999999999999988665321
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
++ ..+...|.++...++|.+|...|..+...
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 79 YS----KAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 12 34566778888999999999999998764
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.58 E-value=0.032 Score=46.78 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCC----CCcch--hhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQRED----GTDDQ--KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~----~~~d~--~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
....+|..++..|+|++|...+.+....+.... ..++. ........++...+..+...|++.+|...++++..+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 357899999999999999999998887632100 00000 001334567777788899999999999999998776
Q ss_pred hccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 212 ~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+. + ...+...|.++...++|.+|..+|..+...
T Consensus 93 ~p~--~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET--N----EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc--c----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 422 1 234556788899999999999999998763
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.55 E-value=0.037 Score=42.50 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|++++|...+++....... + ...+.....++...|++.+|...++++....+. ++
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 72 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-----N-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WG 72 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----c-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cH
Confidence 568899999999999999999999887421 1 245556667888999999999999988665321 12
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..+...|.++...++|.+|...|..+...
T Consensus 73 ----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 ----KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 24455677888899999999999988653
No 162
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.55 E-value=0.26 Score=55.91 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHhcCCc---cc--hh-------------hhHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEP---EK--AE-------------WGFKA--------LKQTVKLYYRLGKYKEMMDAYREMLT 82 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~---~~--~~-------------~~~k~--------l~~l~~l~~~~~~~~~l~e~~~~l~~ 82 (426)
.++|.+|++.|++++-..+ ++ .. -.... ...++.++.+.|++++|.+.|++...
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~ 1077 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV 1077 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 4569999999999994333 11 00 00011 12247888999999999999988632
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHH
Q 014350 83 YIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKEL 162 (426)
Q Consensus 83 ~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el 162 (426)
.. +.++.+++.+. -++.+.+..+.+....+| .++|+.+++.|++++|.+.+.+.
T Consensus 1078 ~~----------~A~~VLie~i~------------nldrAiE~Aervn~p~vW----sqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1078 NT----------SAVQVLIEHIG------------NLDRAYEFAERCNEPAVW----SQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HH----------HHHHHHHHHHh------------hHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCHHHHHHHHHhc
Confidence 21 11222222221 122222233333344444 37788888888888888777442
Q ss_pred HhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC--C-----------Ch-hH--------
Q 014350 163 HKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI--P-----------HP-RI-------- 220 (426)
Q Consensus 163 ~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~--~-----------~p-~~-------- 220 (426)
+|. . .+..-+..+...|++..|-.++..|++..... . .+ .+
T Consensus 1132 ----------dD~---s----ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n 1194 (1630)
T 1xi4_A 1132 ----------DDP---S----SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPN 1194 (1630)
T ss_pred ----------CCh---H----HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCC
Confidence 121 1 22233566777788888888887776544210 0 00 00
Q ss_pred HHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 221 MGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 221 ~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
.+.+ ..-|..+..+++|.+|..+|..+
T Consensus 1195 ~ad~-~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1195 NAHI-QQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHH-HHHHHHHHhcCCHHHHHHHHHhh
Confidence 0111 23566777788888887777766
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.55 E-value=0.093 Score=51.19 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
....+..++..+++.|+|++|.+.|.+.+... +... .. .+ .+.. ....
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-~~~~---------------~~-~~--~~~~-------------~~~~ 269 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSR---------------AA-AE--DADG-------------AKLQ 269 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH---------------HH-SC--HHHH-------------GGGH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCc---------------cc-cC--hHHH-------------HHHH
Confidence 45678889999999999999999999999886 3321 00 01 0000 0011
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+..++|..+...|+|++|.+.+++...... + ....+.....++...+++.+|...++++....
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------S------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 12234567999999999999999999999988632 1 23455666678999999999999999997764
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHH
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~ 244 (426)
+. ++.+ +...+.++...+++.++.+.
T Consensus 338 P~--~~~~----~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 PE--DKAI----QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT--CHHH----HHHHHHHHHHHHHHHHHHHC
T ss_pred CC--CHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 32 2222 22233344445555555443
No 164
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.025 Score=53.13 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=101.9
Q ss_pred HHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh-----hcchhHHHHHHHHHHHHHhhCCCCC------CCCcccccccCC
Q 014350 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDE-----AGNQRRIQCLKYLVLANMLMESEVN------PFDGQEAKPYKN 291 (426)
Q Consensus 223 ~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~-----~~~~~~~~~lky~~L~~lL~~~~~~------~~~s~~~~~~~~ 291 (426)
.+++.++++.+..+|..+=-+++.+-..-|.. ..++....++-|-+|+.+..++..+ .+... .....+
T Consensus 60 ~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~-~~~~~~ 138 (274)
T 4b4t_T 60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKH-IKNLED 138 (274)
T ss_dssp -CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCS-SSTTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh-hHhHhc
Confidence 56788888888888877655555554333322 1234556677777777665443211 11110 111234
Q ss_pred CcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCC-ChH
Q 014350 292 DPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNV-PEK 370 (426)
Q Consensus 292 ~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l-~~~ 370 (426)
+|.+..--.|-+++..|+|.+|.++...... -.+.+.-.++.+..++|...+..+.+.|.+|+++.+++.|++ +++
T Consensus 139 d~~Ik~al~le~al~eGnY~kff~l~~~~~~---p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~ 215 (274)
T 4b4t_T 139 DSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQ---NISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEK 215 (274)
T ss_dssp CHHHHHHHHHHHHHHHTCSHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHH
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHH
Confidence 6767766789999999999999887654211 012234456788999999999999999999999999999999 577
Q ss_pred HHHHHHHH
Q 014350 371 DVEQLLVS 378 (426)
Q Consensus 371 evE~~l~~ 378 (426)
++...+.+
T Consensus 216 e~~~F~~~ 223 (274)
T 4b4t_T 216 ETEKFALE 223 (274)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777665
No 165
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.52 E-value=0.016 Score=44.88 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~ 105 (426)
.+++++|++.|+++++.++++ ..++..++.+|...|+++++.+.+.+.+... +..+......-+..++....
T Consensus 20 ~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 20 HDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA-REEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHHcc
Confidence 568999999999999998764 3478899999999999999999999999886 54444444445555554443
No 166
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.49 E-value=0.0053 Score=44.80 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=52.1
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.+..+++.-+.+.|+++|..||++.+++-.-|-.|..+|+|.|.||-..+.|.+.+.
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 346778888999999999999999999999999999999999999999889888765
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.47 E-value=0.036 Score=44.54 Aligned_cols=94 Identities=6% Similarity=-0.044 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|++++|...+++....-.+ -.+.+.....++...|++.+|...++++....+.. +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~ 85 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--I 85 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H
Confidence 357899999999999999999999887321 23455566678899999999999999987764321 2
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
..+...|.++...+++.+|...|..+..
T Consensus 86 ----~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 86 ----AVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2445667888899999999999988865
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.41 E-value=0.017 Score=44.15 Aligned_cols=97 Identities=6% Similarity=-0.007 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|++++|...+.+....... + .+.+.....++...|++.+|...++++....+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 75 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-----E-------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN- 75 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-
Confidence 468899999999999999999999887421 1 234556667889999999999999998765432101
Q ss_pred hHHHHHHHhhHHHhHHh-hcHHHHHHHHHHHHhh
Q 014350 219 RIMGIIRECGGKMHMAE-RQWADAATDFFEAFKN 251 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~-~~y~~A~~~f~ea~~~ 251 (426)
...+...|.++... ++|.+|..+|..+...
T Consensus 76 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 ---KDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ---HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 23455667888889 9999999999988654
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.30 E-value=0.12 Score=39.85 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++.++...|+++++.+++...+... |+ +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----------------------~~-~~-------------------- 43 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----------------------PN-NA-------------------- 43 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------cC-cH--------------------
Confidence 35778889999999999999999888776553 22 00
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.....+|.++...|++++|...+.+....... + ...+.....++...|++.+|...++++....
T Consensus 44 ----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 44 ----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 01346788888899999999888888776321 1 1334455567888889999988888876553
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.29 E-value=0.033 Score=43.67 Aligned_cols=83 Identities=11% Similarity=0.050 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCCh
Q 014350 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (426)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~ 112 (426)
++|++.|++.++.++++ ..++..++.+|...|+++++.+++...+... |+ ..
T Consensus 2 ~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------------p~-~~ 53 (115)
T 2kat_A 2 QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----------------------PT-YS 53 (115)
T ss_dssp CCHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH
T ss_pred hHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----------------------CC-cH
Confidence 46899999999988754 4678899999999999999999998887663 32 00
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcc
Q 014350 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (426)
Q Consensus 113 ~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~ 167 (426)
.....+|.++...|++++|...+++......
T Consensus 54 ------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 54 ------------------------VAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp ------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 0145789999999999999999999887643
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.28 E-value=0.027 Score=56.65 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHhcCCccc-----------hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEK-----------AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~-----------~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~ 96 (426)
..+++++|++.|.+.++..+.+ ......++.+++.+|.+.|+|+++++++...+...
T Consensus 280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------------ 347 (457)
T 1kt0_A 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD------------ 347 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------
T ss_pred hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------
Confidence 4678999999999999876532 11235788899999999999999999999887764
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 97 v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
|+ +. ...+++|..|...|+|++|...+++.....
T Consensus 348 -----------p~-~~------------------------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 -----------SA-NE------------------------KGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp -----------TT-CH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -----------Cc-cH------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 32 00 125688999999999999999999998874
No 172
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.24 E-value=0.099 Score=40.34 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~ 217 (426)
....+|..+...|++++|.+.+.+....... + ...+.....++...|++.+|...++++....+. +
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~ 76 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N 76 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--c
Confidence 3568899999999999999999999877321 1 234455567888999999999999988654321 1
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
+ ..+...|.++...++|.+|...|..+...
T Consensus 77 ~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 A----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 23445677788899999999999988653
No 173
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.011 Score=45.64 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|+|++|.+.+++....... + ...+......+...|++.+|...++++....+...++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ-----N-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence 467899999999999999999998877321 1 2445566678888999999999998887665443333
Q ss_pred hHHHHHHHhhHHHhHHhhcHHH
Q 014350 219 RIMGIIRECGGKMHMAERQWAD 240 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~ 240 (426)
..........|..+...+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHhh
Confidence 3334444444555544444433
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.19 E-value=0.054 Score=47.01 Aligned_cols=108 Identities=16% Similarity=0.024 Sum_probs=78.9
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCc----chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD----DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~----d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~ 213 (426)
....+|..++..|+|++|.+.+.+............ +.........++......+...|++.+|...++++....+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 456899999999999999999999988754321000 0000112246777777889999999999999999876632
Q ss_pred cCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 214 ~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
. + ...+...|.++...++|.+|..+|..+...
T Consensus 120 ~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 N--N----VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp T--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c--c----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 1 234556788889999999999999998764
No 175
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.15 E-value=0.032 Score=42.30 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFK-ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k-~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
.+++++|++.|+++++.++++ .. ++..++.+|...|+++++.+++...+... +.......-..+..++..+.+
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQARKMVMDILNFYNK 86 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988754 34 88899999999999999999999999886 654444433555555555554
No 176
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.11 E-value=0.052 Score=53.35 Aligned_cols=132 Identities=6% Similarity=-0.026 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
...++..++.++...|+++++++.+.+.+... |+ +.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-----------------------P~-~~-------------------- 131 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-----------------------AA-NY-------------------- 131 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-----------------------TT-CH--------------------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----------------------cc-CH--------------------
Confidence 36778889999999999999999999888774 43 10
Q ss_pred hhHHHHhHHHHHHHHHhcc-HHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 133 RLWFKTNLKLCKIWFDMGE-YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~-~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
.....+|.++...|+ +++|...+++......+ -.+.+.....++...|++.+|...++++..+
T Consensus 132 ----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 132 ----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp ----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 014577888999996 99999999999888421 2345556667888999999999999999776
Q ss_pred hccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 212 ~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
.+.. ...+...|.++...++|.+|..+|..+..
T Consensus 196 dP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 196 DAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp CTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4321 12345567778888999999999999876
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.09 E-value=1 Score=42.81 Aligned_cols=174 Identities=10% Similarity=0.054 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh---hhhhHHHHHHHHHHHHhc
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVS 105 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~---~~k~~~~k~v~~il~~~~ 105 (426)
.+++++|++.+.+.++.++. .-...+.-.++.++.+.|+.+.|.+.+..+.... +. -.-+-..-+...-+....
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEA--EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-EDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-ccccccchHHHHHHHHHHHHHHh
Confidence 57899999999999887652 1247788889999999999999999999987664 30 001111222222223232
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHH
Q 014350 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (426)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~ 185 (426)
.... ......+|+...+ ...+ |-....-+. .+...|+|++|.+.|+.+.+.-++... .+- ....-.+++
T Consensus 190 g~~~--~q~A~~~f~El~~---~~p~---~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~-k~~-~~p~~~~~L 258 (310)
T 3mv2_B 190 NKET--ATSNFYYYEELSQ---TFPT---WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQ-KEN-AVLYKPTFL 258 (310)
T ss_dssp TCST--TTHHHHHHHHHHT---TSCS---HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTT-CHH-HHSSHHHHH
T ss_pred CCcc--HHHHHHHHHHHHH---hCCC---cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccc-ccc-CCCCCHHHH
Confidence 2111 2233444443222 2111 222222222 799999999999999976654211000 000 001134666
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 014350 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (426)
Q Consensus 186 l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~ 220 (426)
...+.++...|+ .+..++.+++...+ .+|.+
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~~~P--~hp~i 289 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVKLDH--EHAFI 289 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHHTTC--CCHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHHhCC--CChHH
Confidence 677777777887 78888888776542 24554
No 178
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.013 Score=45.15 Aligned_cols=53 Identities=13% Similarity=0.284 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..+++++|++.|.+.++.++++ ..++..++.++...|+++++.+.+...+...
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4578999999999999988754 4678899999999999999999998887664
No 179
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.81 E-value=0.16 Score=44.55 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH----------------HHHHHHhhcCHHHHH
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI----------------EIQMYTETKNNKKLK 202 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~----------------e~rl~~~~~d~~kak 202 (426)
.+..|..+.+.|+|++|...+++......+ -.+.+.. ...++...|++.+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 457788899999999999999998887321 1223333 567889999999999
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 203 QLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 203 ~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..++++....+.. + ..+...|.++...++|.+|...|..+...
T Consensus 75 ~~~~~al~~~p~~--~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 75 LFYKELLQKAPNN--V----DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHCTTC--H----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999987664321 2 24455688888999999999999999763
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.72 E-value=0.065 Score=41.94 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~ 88 (426)
..+++++|++.|+++++.+++. ..++..++.+|...|+++++.+.+...+... +..
T Consensus 31 ~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~ 86 (115)
T 2kat_A 31 EHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAA-QSR 86 (115)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHH
T ss_pred HccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ccc
Confidence 3568999999999999988754 4577899999999999999999999998886 543
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.72 E-value=0.39 Score=40.99 Aligned_cols=112 Identities=12% Similarity=0.168 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh-------hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHH
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-------TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 126 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~-------~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l 126 (426)
.-.+.+.+..+++.|+|+++++.|.+.+.+. |.. ..+.-+.+..+....+..... .+.....++.+++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--FDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhh
Confidence 4567788999999999999999999999997 552 111112233344333433333 556677777777743
Q ss_pred Hh-----hhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhccc
Q 014350 127 EE-----AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 127 ~~-----~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~ 168 (426)
+. ..+.+.|++...++|..+...|++++|.+.+++......+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 21 2345567677799999999999999999999999998654
No 182
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.68 E-value=0.19 Score=50.21 Aligned_cols=103 Identities=9% Similarity=-0.033 Sum_probs=78.9
Q ss_pred HHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---ChhHHHH
Q 014350 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGI 223 (426)
Q Consensus 147 ~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~---~p~~~~~ 223 (426)
...|+|++|.+++++........-|.+. ......+-..+.+|..+|+|.+|..+++++..+....+ ||.+-.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~H----p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~- 383 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSN----VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS- 383 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhc----hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH-
Confidence 3468999999999998886555444322 44667777778899999999999999999987776543 576543
Q ss_pred HHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 224 IRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 224 i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
...-.|.+|..+|+|.+|...|..++..+..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3344577888999999999999999876643
No 183
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.60 E-value=0.35 Score=48.16 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=82.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---C
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---H 217 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~---~ 217 (426)
+...-+...|+|++|.+++++........-|... ...+..+-..+.+|..+|+|.+|..++.++..+....+ |
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h----~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDIN----IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccc----hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 3334455789999999999999876555444322 45677777778899999999999999999977766543 5
Q ss_pred hhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhh
Q 014350 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (426)
Q Consensus 218 p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~ 254 (426)
|.+- ....-.|.+|...|+|.+|...|..+++.+..
T Consensus 368 p~~a-~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 368 PVRG-VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7653 34445577888999999999999999876654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.55 E-value=0.12 Score=50.41 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCC--CCcc--hhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQRED--GTDD--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~--~~~d--~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
...+|..++..|+|++|.+.+++......... ...+ ..........+......+...+++.+|...++++....+
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 56899999999999999999998887432100 0000 000133567777888889999999999999999876532
Q ss_pred CCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 215 ~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
. ....+...|.++...++|.+|..+|..+.+.
T Consensus 305 ----~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 ----S-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ----T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1 1234556678888999999999999998764
No 185
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.48 E-value=0.13 Score=43.43 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=73.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHH-HHhhcCH--HHHHHHHHHHHhhhcc
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNN--KKLKQLYQKALAIKSA 214 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl-~~~~~d~--~kak~~l~~a~~i~~~ 214 (426)
....+|.++...|++++|...+.+....... + .+.+.....+ +...|++ .+|...++++....+.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~ 113 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGE-----N-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN 113 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----C-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC
Confidence 3568999999999999999999999887431 1 2344444556 7788998 9999999988765321
Q ss_pred CCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 215 ~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
++ ..+...|.++...++|.+|...|..++...
T Consensus 114 --~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 114 --EI----TALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp --CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred --cH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 12 244566788889999999999999997654
No 186
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.46 E-value=0.11 Score=48.30 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|+|++|.+.+++....... ....+.....++...|++.+|...++++....+. ++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~ 72 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SV 72 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH
Confidence 468899999999999999999999887321 1245666677899999999999999988654321 11
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
......|.++...++|.+|...|..+....
T Consensus 73 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 73 ----KAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 244556888889999999999999997643
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.39 E-value=0.33 Score=45.53 Aligned_cols=215 Identities=8% Similarity=-0.070 Sum_probs=105.6
Q ss_pred chhhHhHHHHhhcccCCCCHHHHHHHHHHHhcCCccc-hhhhHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh
Q 014350 13 FTVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEK-AEWGFKALK--QTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (426)
Q Consensus 13 ~~~~~~~~~~~ak~~~~~~~~~Ai~~~~~ii~~~~~~-~~~~~k~l~--~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~ 89 (426)
|+---...+-.|-+....|+++|++.|.++++.+++. ..|.-++-- .-+.++...++..+.+..++.-+.+- +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~-p~~l 81 (282)
T 4f3v_A 3 MTDRLASLFESAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-MSTL 81 (282)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC-GGGG
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC-hhhh
Confidence 3333344555555666779999999999999999854 456433100 00233333333444444444333321 1110
Q ss_pred hhHHH---------------HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh-hhhhHHHHhHHHHHHHHHhccHH
Q 014350 90 RNYSE---------------KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYG 153 (426)
Q Consensus 90 k~~~~---------------k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~kl~~r~~~~La~~~~~~g~~~ 153 (426)
.+.+. .-++-..-..- ....-|+.+.+.++... .+--++ ..+.+|.++++.|+|+
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L--------~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACE--------AAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHH--------HHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHH--------HHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHH
Confidence 00000 00000000000 00111222333333221 111222 4456667777777777
Q ss_pred HHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhH
Q 014350 154 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHM 233 (426)
Q Consensus 154 ~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~ 233 (426)
+|...+++..... +. ...-+++..-...+..+|++.+|...++++.. .-.+|..........|..+.
T Consensus 153 dA~~~l~~a~~~~-------d~---~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 153 DVIDQVKSAGKWP-------DK---FLAGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp HHHHHHTTGGGCS-------CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccC-------Cc---ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHH
Confidence 7777776332221 11 11234555555667777778877777776642 11114333334456677777
Q ss_pred HhhcHHHHHHHHHHHHh
Q 014350 234 AERQWADAATDFFEAFK 250 (426)
Q Consensus 234 ~~~~y~~A~~~f~ea~~ 250 (426)
..|+..+|...|..++.
T Consensus 220 ~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 77777777777777765
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.27 E-value=5.5 Score=45.48 Aligned_cols=164 Identities=13% Similarity=0.188 Sum_probs=91.3
Q ss_pred hhccc-CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh-------hhhhHHH
Q 014350 23 LEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSE 94 (426)
Q Consensus 23 ~ak~~-~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-------~~k~~~~ 94 (426)
-||.. ..+++++|++.|.+. ++ ...+.+++..+.+.|+|+++.+++..-++..+.. ..-++..
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA-----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc
Confidence 34433 345688888888663 11 4567779999999999999999998877654111 1111111
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHh--h-hhhhhHHHH--hHHHHHHHHHhccHHHHHHHHHHHHhhcccC
Q 014350 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEE--A-KNERLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (426)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~--~-~~~kl~~r~--~~~La~~~~~~g~~~~A~~ll~el~~~~~~~ 169 (426)
.+..+-+++.. ++ .. .+..++..+.+. . .....|-+. ..++|..+...|+|++|.+..++....
T Consensus 1182 -rleele~fI~~-~n--~a---d~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~---- 1250 (1630)
T 1xi4_A 1182 -RLAELEEFING-PN--NA---HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST---- 1250 (1630)
T ss_pred -CHHHHHHHHhC-CC--HH---HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCH----
Confidence 12233333322 22 21 222211111111 0 112223333 458999999999999999888766322
Q ss_pred CCCcchhhhh--------------h--------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 170 DGTDDQKKGS--------------Q--------LLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 170 ~~~~d~~~~~--------------~--------l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
+.|.. . --+.+-..++.|.+.|.+..|-.+++.+...
T Consensus 1251 -----~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1251 -----RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred -----HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 11110 0 0112224456788889999999998887544
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.25 E-value=0.48 Score=40.44 Aligned_cols=110 Identities=12% Similarity=-0.022 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCc--chhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc-cC
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AI 215 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~--d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~-~~ 215 (426)
...+|..++..|+|++|.+.+++......+.+... +. ...-...+......+..+|++..|...++++..+-| ..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~--~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH--AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhh--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 46889999999999999999999998865421110 10 011233777777889999999999999999977611 11
Q ss_pred -CChhHHHHHH----HhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 216 -PHPRIMGIIR----ECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 216 -~~p~~~~~i~----~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.+|. .+..+ .-.|..+...++|.+|..+|..+.+-
T Consensus 92 e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1232 12233 56788888999999999999999764
No 190
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.16 E-value=2.4 Score=40.64 Aligned_cols=253 Identities=11% Similarity=0.069 Sum_probs=134.5
Q ss_pred cCCCCH---HHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 014350 27 LVETDP---EGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (426)
Q Consensus 27 ~~~~~~---~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il 101 (426)
+..+++ =+|-+.|+.+..... .+-......|.+=+..+.+.|++..+.++...++... ..-.....+..+.+++
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy-~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTF-RQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHH
Confidence 344566 566666666655331 1222234555666777788888888888887777766 3222233456777788
Q ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHhhhh----hhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhh
Q 014350 102 DFVSGSASQNFSLLREFYQTTLKALEEAKN----ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (426)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~ 177 (426)
+.+...|... ..+..+++. ++.|+.. ..-.-.+...+|..|.+.|+|.+|...+- .. ++|.
T Consensus 102 ~L~~~~~~~~-p~r~~fi~~---ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg-----~~~s-- 166 (336)
T 3lpz_A 102 GCLRLFQPGE-PVRKRFVKE---MIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LG-----TKES-- 166 (336)
T ss_dssp HHHTTSCTTC-HHHHHHHHH---HHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TS-----CTTH--
T ss_pred HHHHhCCCCC-cHHHHHHHH---HHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hc-----CCch--
Confidence 8887766422 245555555 4555432 22334667789999999999999876552 21 1221
Q ss_pred hhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhhcc
Q 014350 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (426)
Q Consensus 178 ~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~~~ 257 (426)
.....+++.. ++.. ++-.. .+.+-....+-++..+|-+.|...| +.|.+......
T Consensus 167 ~~~~a~mL~e---w~~~-~~~~e--------------------~dlfiaRaVL~yL~l~n~~~A~~~~-~~f~~~l~~~~ 221 (336)
T 3lpz_A 167 PEVLARMEYE---WYKQ-DESHT--------------------APLYCARAVLPYLLVANVRAANTAY-RIFTSALVEDN 221 (336)
T ss_dssp HHHHHHHHHH---HHHT-SCGGG--------------------HHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHH---HHHh-cCCcc--------------------HHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHhhcC
Confidence 0122233222 2211 11110 1111111122334455665555332 22221110000
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCCcccccccCCCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCCh-hHHHHH
Q 014350 258 QRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDP-FIRNYI 334 (426)
Q Consensus 258 ~~~~~~lky~~L~~lL~~~~~~~~~s~~~~~~~~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~-~l~~~~ 334 (426)
+. |..+.+.. ++.....|...|.+..+.-|+.+...++...|..+.++|++.+..|| .+...+
T Consensus 222 p~-------------L~~q~~~~-~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L 285 (336)
T 3lpz_A 222 KG-------------LTVQNIGS-QSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTAL 285 (336)
T ss_dssp TT-------------SCCEESCC---CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHH
T ss_pred CC-------------cccccccc-CCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 00 00000000 11112223334677788889999999999999999999999999997 654433
No 191
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.16 E-value=0.75 Score=40.36 Aligned_cols=151 Identities=12% Similarity=0.012 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~----~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
.+|+++|++.|++..+.. ...++..++.+|.. + +++++.++|.+....- ...+...+...+
T Consensus 31 ~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--------~~~a~~~Lg~~y 95 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--------SKSGEIVLARVL 95 (212)
T ss_dssp HTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 468999999999997653 25788899999998 7 9999999999885431 123344455555
Q ss_pred cCCC--CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 105 SGSA--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 105 ~~~~--~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.... ..+.+...++++.+.+. ....-......+||.+|.. .+++++|...+++..... +..+
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~---- 163 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS----RTGY---- 163 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS----CTTH----
T ss_pred HcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC----CCHH----
Confidence 4310 11244445544443331 1111235667899999999 889999999999987661 1111
Q ss_pred hhHHHHHHHHHHHHHh------hcCHHHHHHHHHHHHhh
Q 014350 179 SQLLEVYAIEIQMYTE------TKNNKKLKQLYQKALAI 211 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~------~~d~~kak~~l~~a~~i 211 (426)
.......+|.. .+|+.+|...++++...
T Consensus 164 -----a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 164 -----AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -----HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 12222334443 23899999999987543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.12 E-value=0.072 Score=51.13 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
....+..++..+++.|+|+++..+|...+... +... .+.. .+ ...+.. ..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~-------------~~~~-~~----~~~~~~----~~------- 227 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDF-------------MFQL-YG----KYQDMA----LA------- 227 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHH-------------HHTC-CH----HHHHHH----HH-------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccch-------------hhhh-cc----cHHHHH----HH-------
Confidence 45678889999999999999999999988875 3311 0110 00 011111 11
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
+...+..++|..+...|+|++|...+++....... ....+......+...+++.+|...++++..+.
T Consensus 228 -l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 228 -VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp -HHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 11135679999999999999999999999887321 13455666778999999999999999886654
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
+. ++.... ....+.....+.+..+...|..+|..
T Consensus 295 p~--~~~a~~---~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 295 PD--DKAIRR---ELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------------------
T ss_pred CC--CHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 32 121111 11111122344556666666666543
No 193
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.90 E-value=0.64 Score=47.23 Aligned_cols=172 Identities=11% Similarity=0.060 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhh
Q 014350 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (426)
Q Consensus 55 k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl 134 (426)
..+..++..|.+.|++++|++.+..+... +. . ...-..+.++..+..............++.+.+.++......+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv-~--pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~ 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN--GV-Q--LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TC-C--CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC-C--CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 35677889999999999999999998654 21 1 1223456667766542210000001112222333332211111
Q ss_pred --HHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 135 --WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 135 --~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
-..+..-|...+...|++++|.+++.++...-..| + +..+-..+..|.+.|++.+|..+++.-...
T Consensus 102 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~- 169 (501)
T 4g26_A 102 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP----R-------LRSYGPALFGFCRKGDADKAYEVDAHMVES- 169 (501)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----c-------cceehHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 11334577888999999999999999998874332 1 123444556788999999999998865432
Q ss_pred ccC-CChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 213 SAI-PHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 213 ~~~-~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
++ ++.. .+......+...|++.+|.+.|.+-
T Consensus 170 -G~~Pd~~----ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 170 -EVVPEEP----ELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp -TCCCCHH----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCCCCHH----HHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 22 2222 1222223445678899988887765
No 194
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.76 E-value=1.1 Score=45.27 Aligned_cols=159 Identities=11% Similarity=0.090 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~ 108 (426)
.+++++|.+.|++.++.++.+. ..+....+.++.+.|+++++.+.|...+... +......... ..+++... .
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~---a~~~~~~~-~ 405 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA---ALMEYYCS-K 405 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHH---HHHHHHHT-C
T ss_pred cCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHH---HHHHHHHc-C
Confidence 4678999999999999876542 2467788888999999999999999887764 3211212211 12222221 2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHH
Q 014350 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (426)
Q Consensus 109 ~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e 188 (426)
+ .+.....++.+++.- ..+..+ ...++.++...|++++|..+++.....+..+ . .....+...-
T Consensus 406 ~--~~~A~~~~e~al~~~--p~~~~~----~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~-----~---~~~~~lw~~~ 469 (530)
T 2ooe_A 406 D--KSVAFKIFELGLKKY--GDIPEY----VLAYIDYLSHLNEDNNTRVLFERVLTSGSLP-----P---EKSGEIWARF 469 (530)
T ss_dssp C--HHHHHHHHHHHHHHH--TTCHHH----HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC-----G---GGCHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHC--CCCHHH----HHHHHHHHHhCCCHhhHHHHHHHHHhccCCC-----H---HHHHHHHHHH
Confidence 2 556677777666631 112233 3678889999999999999999988775321 1 1122333333
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhh
Q 014350 189 IQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 189 ~rl~~~~~d~~kak~~l~~a~~i 211 (426)
+++....||...+..+..++...
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666789999999988877554
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.73 E-value=0.21 Score=38.20 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~ 214 (426)
....+|.++...|+|++|.+.+++....... + ...+.....++...|++.+|...++++..+...
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD-----Y-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3568899999999999999999999887421 1 235556667888999999999999988766543
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.53 E-value=0.19 Score=39.48 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+++++|++.|+++++.++++ ..++..++.++...|+++++.+.+...+...
T Consensus 40 ~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 40 LGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 568999999999999998765 5678889999999999999999999998875
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.19 E-value=0.16 Score=37.22 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+++++|++.|.+.++.++++ ..++..++.++...|+++++.+++...+...
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 568999999999999887654 4678899999999999999999999988875
No 198
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=94.13 E-value=0.11 Score=47.18 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=71.2
Q ss_pred CCcccHHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhC-CCh
Q 014350 291 NDPEILAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELN-VPE 369 (426)
Q Consensus 291 ~~~~~~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~-l~~ 369 (426)
.+|.+..+..|.+...++++..|-+.++. ++-+...+..|.+.+|......+...|++|+++.+++.|| ++.
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~ 167 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSD 167 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCH
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCH
Confidence 46788888899999999999988765543 3334444556778888888888889999999999999995 899
Q ss_pred HHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 370 KDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
+++++++.+- | =++| .+|.|.+
T Consensus 168 ~el~~fi~~~---G---W~vd-~~g~I~~ 189 (226)
T 1rz4_A 168 SQLKVWMSKY---G---WSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHH---T---CEEC-C--CEEC
T ss_pred HHHHHHHHHC---C---CEEC-CCccEEe
Confidence 9999998872 3 2455 5566644
No 199
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=94.10 E-value=1.4 Score=36.98 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.+...+..+...|+++++...+...+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 36 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL 36 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35667889999999999999998887765
No 200
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.07 E-value=2 Score=39.49 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
...+..++..+...|+++++.+.|...+...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 147 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS 147 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 4567788999999999999999999988875
No 201
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.80 E-value=5.5 Score=39.04 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHhcCCc-cchhhhHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 30 TDPEGALAGFAEVVAMEP-EKAEWGFKAL-KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~-~~~~~~~k~l-~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
+..+.-++...+.++-.. ++.-|-...+ .+++++|.+.|+|.++.+.+..+++..+..-.+...-.+.-.-+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 445555666666665333 2344422233 37999999999999999999999998733222333333333333333333
Q ss_pred CCCChhHHHHHHHHHHHHHHhh-hhhhhHHHHhHHHHHHHH-HhccHHHHHHHHHHHH
Q 014350 108 ASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELH 163 (426)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~l~~~-~~~kl~~r~~~~La~~~~-~~g~~~~A~~ll~el~ 163 (426)
. |.......+..++...... +..++-.++..--|.++. ..|+|.+|...+-+.-
T Consensus 153 ~--n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 153 S--NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp T--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3 3667888888888776554 456666677778888999 8999999987777764
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.64 E-value=0.23 Score=38.11 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
.++|...|++.++.++++ .+++..++.++++.|+|+++.++++.++...
T Consensus 25 ~~~A~~~l~~AL~~dp~~----~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN----EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 689999999999998865 7889999999999999999999999998775
No 203
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.60 E-value=5 Score=37.98 Aligned_cols=129 Identities=5% Similarity=-0.064 Sum_probs=82.9
Q ss_pred cCCCCHHHHHHHHHHHhcCCc--cchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 014350 27 LVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~--~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~ 104 (426)
+..+++=+|-+.|+.+..... .+-......|.+-+..+.+.|++..+.++...++... ..-.....+..+.++++.+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Confidence 445677777777777766432 1222345566666778888888888888877777766 3333334566777777777
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhhh---h-hhhHHHHhHHHHHHHHHhccHHHHHHHHH
Q 014350 105 SGSASQNFSLLREFYQTTLKALEEAK---N-ERLWFKTNLKLCKIWFDMGEYGRMSKILK 160 (426)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~l~~~~---~-~kl~~r~~~~La~~~~~~g~~~~A~~ll~ 160 (426)
...|.. ...+.++++. .+.|+. . ..-.-.+..-+|..|...|++.+|...+-
T Consensus 103 ~~~p~~-~~~r~~fi~~---ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPS-EPNLKDVITG---MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTT-CTTHHHHHHH---HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCC-CchHHHHHHH---HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 765531 2245566555 445542 2 23455777889999999999998876543
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.03 E-value=0.87 Score=33.91 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=48.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE-VYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e-~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
+++|..+...|+|++|.+.+++....... + .. .+.....++...|++.+|...++++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV-----G-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----T-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----c-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 57889999999999999999999887321 1 23 55566678889999999999999987664
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.73 E-value=0.69 Score=35.79 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
...||.++++.|+|..|...+++........... .....+++..-...+.+.|++.+|...++++.+..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-----~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-----SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-----cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 5789999999999999999999988765432110 12345666666788999999999999999987654
No 206
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.65 E-value=0.33 Score=46.37 Aligned_cols=107 Identities=11% Similarity=-0.087 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCC-----CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQRED-----GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~-----~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
....+|..++..|+|++|...+.+......... +..+..........+......+...+++.+|...++++....
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 356899999999999999999999877643100 000000001112366777788999999999999999987653
Q ss_pred ccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 213 ~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+. + ...+...|..+...++|.+|..+|..+..
T Consensus 261 p~--~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 EK--N----PKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TT--C----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 1 23455668888999999999999999865
No 207
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=92.28 E-value=0.25 Score=49.78 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 014350 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (426)
Q Consensus 139 ~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p 218 (426)
...+|..+...|+|++|.+.+++....... ....+......+...|++.+|...++++....+. +
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~- 73 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--Y- 73 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--C-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C-
Confidence 356788889999999999999999887321 1345566677899999999999999998765321 1
Q ss_pred hHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 219 ~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
...+...|.++...++|.+|...|..+.+.
T Consensus 74 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 74 ---IKGYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224455678888999999999999999764
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.12 E-value=1 Score=32.57 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 138 ~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
....+|..+...|++++|.+.+++....... + .+.+.....++...+++.+|...++++....
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-----N-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----C-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4568899999999999999999998877321 1 2345556678889999999999999886653
No 209
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.91 E-value=6.4 Score=38.86 Aligned_cols=107 Identities=8% Similarity=-0.018 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhh
Q 014350 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (426)
Q Consensus 54 ~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~k 133 (426)
.++...+++.|.+.|+++.|.+.|..++..- . -++.+++-.+..+=-.+.. .| .......++.+...+...++..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~-~~~~kid~~l~~irl~l~~-~d--~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-I-STGAKIDVMLTIARLGFFY-ND--QLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-T-CCCSHHHHHHHHHHHHHHH-TC--HHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHh-cc--HHHHHHHHHHHHHhhhcCCCHH
Confidence 6788999999999999999999999998885 2 2455555554444322322 33 6677777777777665544444
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
+..++..--|.++...++|.+|...+.++-..
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 44455556677888899999999888887544
No 210
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.76 E-value=4.4 Score=40.93 Aligned_cols=157 Identities=11% Similarity=0.022 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGK---------YKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~---------~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
+.+++++|++.|.+..+..-.- ....+..++..|...+. .+.+.+.+..+... +.. .-....+
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~p---d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~~---Pd~~tyn 109 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQL---SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KVV---PNEATFT 109 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TCC---CCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CCC---CCHHHHH
Confidence 4568999999999987643211 13456667778876654 57777877776543 111 1223455
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhh
Q 014350 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (426)
Q Consensus 99 ~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~ 178 (426)
.++..+....+ .+...++++...+ .+ -.--..+..-|..-|...|+.++|.+++.++...-..| |
T Consensus 110 ~lI~~~~~~g~--~~~A~~l~~~M~~----~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----d---- 174 (501)
T 4g26_A 110 NGARLAVAKDD--PEMAFDMVKQMKA----FG-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----E---- 174 (501)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHH----TT-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----C----
T ss_pred HHHHHHHhcCC--HHHHHHHHHHHHH----cC-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----C----
Confidence 66666655332 3333333332111 00 00112344567788899999999999999998764332 1
Q ss_pred hhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 014350 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (426)
Q Consensus 179 ~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~ 210 (426)
...+..-++.|.+.|+..+|..++++-+.
T Consensus 175 ---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 ---EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 12445556788999999999999887643
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.55 E-value=0.23 Score=38.65 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=53.6
Q ss_pred hHhHHHHhhccc-CCCCHHHHHHHHHHHhcCCcc---chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPE---KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 16 ~~~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~~---~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
++.-||.-|+.. .++++..|+.-|+..++..++ .+.....++.+++..+++.|+++.+++++...+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 345566666654 456899999999999875321 122346889999999999999999999999998875
No 212
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.37 E-value=0.66 Score=43.49 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~ 216 (426)
.+.+-+|..+.+.|+|++|.+++..+...- + . .+ .......+++..+++..|...++.+.+ .+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p----~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~ 165 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG-------S----E-HL-VAWMKAVVYGAAERWTDVIDQVKSAGK----WP 165 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------C----H-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG----CS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------C----c-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc----cC
Confidence 455678899999999999999988776531 1 1 11 444445689999999999999874422 33
Q ss_pred ChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 217 ~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+|.....++.+.|..+...+++.+|..+|..+..
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5665667888889999999999999999999864
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.30 E-value=0.37 Score=40.85 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhcCC-ccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 31 DPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~-~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+.+++|.+|+++++.+ ++ -...++.+++-.|++.|+|+++.+++..++..-
T Consensus 50 ~~~~gI~lLe~ll~~~~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3569999999999876 32 247899999999999999999999999999885
No 214
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.23 E-value=0.25 Score=36.85 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.|+.++....++++++||+.|++|+..|...|..+...|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 456777778999999999999999999999999999999873
No 215
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.92 E-value=0.53 Score=34.87 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=40.3
Q ss_pred HHHHHhccccc---cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC
Q 014350 344 QVLLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (426)
Q Consensus 344 ~~l~~i~~pYs---~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~ 392 (426)
+.|+.++..-. +++...||+.+|+|...|.+.|-+|..+|.|...-+.+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 34455555555 89999999999999999999999999999997764443
No 216
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=90.49 E-value=0.37 Score=36.72 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
.|+.++.-..+|++++||+.|++|+..|...|..+...|.|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45677777899999999999999999999999999999988643
No 217
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=89.97 E-value=6.5 Score=38.79 Aligned_cols=92 Identities=7% Similarity=-0.001 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHhc---cHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHh
Q 014350 138 TNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----KNNKKLKQLYQKALA 210 (426)
Q Consensus 138 ~~~~La~~~~~~g---~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~----~d~~kak~~l~~a~~ 210 (426)
....||.+|...| ++++|.+.+++....-. .+. ..+.....+|... +|+.+|...++++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-----~~a-------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-----VTA-------QRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-----SCH-------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-----HHH-------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 5578999999999 89999999888876632 121 1111222344333 68999999998875
Q ss_pred hhccCCChhHHHHHHHhhHHH-h--HHhhcHHHHHHHHHHHHh
Q 014350 211 IKSAIPHPRIMGIIRECGGKM-H--MAERQWADAATDFFEAFK 250 (426)
Q Consensus 211 i~~~~~~p~~~~~i~~~~g~~-~--~~~~~y~~A~~~f~ea~~ 250 (426)
.. +|..+ ...|.+ + ...+|+.+|..+|..+.+
T Consensus 245 --~g--~~~a~----~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 245 --PG--YPASW----VSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp --GG--STHHH----HHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred --CC--CHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 11 22221 111222 2 347899999999888753
No 218
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.48 E-value=1.1 Score=33.59 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHHHhccccc---cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 344 QVLLKLIKPYT---RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 344 ~~l~~i~~pYs---~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
+.|+.++.... +++...||+.||+|...|.+.|-+|-.+|.|.-. +...|.-.+..+.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC---
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEeCcH
Confidence 33455565555 9999999999999999999999999999999543 3333655555543
No 219
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=89.33 E-value=17 Score=35.61 Aligned_cols=174 Identities=8% Similarity=0.094 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG---KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~---~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~ 107 (426)
+.+.|...++.....++ .+...++.+|...| ++++++++|......- +. .+.....+...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~-------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~-----~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTD-------ICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV-----TAQRVDSVARVLGDA 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCT-------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS-----CHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH-----HHHHHHHHHHHHhCC
Confidence 34455555555533222 27889999999999 8999999988876653 21 111123333444332
Q ss_pred C--CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH-H--HHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHH
Q 014350 108 A--SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKI-W--FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (426)
Q Consensus 108 ~--~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~-~--~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~ 182 (426)
. ..+.+...++++.+. .-......+||.+ + ...|++++|.+.+++.... | +.
T Consensus 227 ~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-----g--~~------- 283 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-----D--QP------- 283 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-----T--CH-------
T ss_pred CCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-----C--CH-------
Confidence 1 112444445444332 2223445688888 4 4689999999999987654 1 11
Q ss_pred HHHHHHHHHHHhhc-----CHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHH----hhcHHHHHHHHHHHHh
Q 014350 183 EVYAIEIQMYTETK-----NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFK 250 (426)
Q Consensus 183 e~~l~e~rl~~~~~-----d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~----~~~y~~A~~~f~ea~~ 250 (426)
+.......+|. .| |+.+|...++++- -.+|.-+ ...|.++.. .+|+.+|...|..+.+
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~----~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAAD----YYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHH----HHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHH----HHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 11222223444 44 9999999988764 1123221 122344433 5599999999998854
No 220
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.11 E-value=1.4 Score=37.52 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHH
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYK 71 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~ 71 (426)
+++|++.|+..++.++++ ..++.+++.++.+.++++
T Consensus 18 feeA~~~~~~Ai~l~P~~----aea~~n~G~~l~~l~~~~ 53 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLD----ADNLTRWGGVLLELSQFH 53 (158)
T ss_dssp HHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHhcccc
Confidence 689999999999998865 456777888887777665
No 221
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=88.76 E-value=1.2 Score=44.58 Aligned_cols=170 Identities=9% Similarity=0.060 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh-
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV----TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK- 130 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~----~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~- 130 (426)
++..+|..|++.|+|+++..+|.+...+. ... .-...+.+| +.+.+..+ ......+...|.+.=++-.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~-~LA~~L~~Lg~yq~AV----ea~~KA~~--~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFG-RLASTLVHLGEYQAAV----DGARKANS--TRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp -------------CTTTHHHHHHHTTCHH-HHHHHHHTTTCHHHHH----HHHHHHTC--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhHH-HHHHHHHHhccHHHHH----HHHHHcCC--chhHHHHHHHHHHcCcHHHH
Confidence 77889999999999999999998774442 110 011122222 22222122 4455666666555311100
Q ss_pred ---hhhhHH--HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHH
Q 014350 131 ---NERLWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 205 (426)
Q Consensus 131 ---~~kl~~--r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l 205 (426)
.-.+.. .-...++.+|...|.+++|..+++.....- ++ .+.++..- -+....=...++.+.+
T Consensus 197 ~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-------~a-----h~~~ftel-~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 197 QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-------RA-----HMGMFTEL-AILYSKFKPQKMREHL 263 (449)
T ss_dssp HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-------TC-----CHHHHHHH-HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-------HH-----HHHHHHHH-HHHHHhcCHHHHHHHH
Confidence 001111 223367889999999999999999887652 21 12222222 2333333456666654
Q ss_pred HHHHhhhccCCChh-HH----HHHHHhhHHHhHHhhcHHHHHHHHHHH
Q 014350 206 QKALAIKSAIPHPR-IM----GIIRECGGKMHMAERQWADAATDFFEA 248 (426)
Q Consensus 206 ~~a~~i~~~~~~p~-~~----~~i~~~~g~~~~~~~~y~~A~~~f~ea 248 (426)
+. ..+.+.-|. +. +.+|.--.-+|.+.++|..|.....+.
T Consensus 264 ~~---~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 264 EL---FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HH---HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HH---HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 42 222333233 22 223333345666789999998877775
No 222
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=88.71 E-value=4.2 Score=32.91 Aligned_cols=112 Identities=8% Similarity=0.022 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCC-
Q 014350 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA- 108 (426)
Q Consensus 30 ~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~- 108 (426)
.|+++|++.|++..+.... .+. ++.+|...+..+++.++|.+....- ...+...+...+....
T Consensus 9 ~d~~~A~~~~~~aa~~g~~------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--------~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM------FGC--LSLVSNSQINKQKLFQYLSKACELN--------SGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT------THH--HHHHTCTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCCH------hhh--HHHHHHcCCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcCCC
Confidence 4789999999999876532 122 9999999999999999988876552 1233444444444311
Q ss_pred -CCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH----hccHHHHHHHHHHHHhh
Q 014350 109 -SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKS 165 (426)
Q Consensus 109 -~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~----~g~~~~A~~ll~el~~~ 165 (426)
..+.+...++++.+.+. -......+|+.+|.. .+++++|.+.+++.-..
T Consensus 73 ~~~d~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 12355556666654441 223456799999999 89999999999988765
No 223
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=88.35 E-value=0.61 Score=34.60 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=36.0
Q ss_pred HHHHHhcccc------ccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 344 QVLLKLIKPY------TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 344 ~~l~~i~~pY------s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
..|+.+++.+ -.++..+||+.||+|...|...|..|-..|.|.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 3445555544 579999999999999999999999999999985
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.19 E-value=1.7 Score=37.19 Aligned_cols=123 Identities=10% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHhhcccCCC-CHHHHHHHHHHHhcCC---cc--chhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH
Q 014350 21 SILEKGLVET-DPEGALAGFAEVVAME---PE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (426)
Q Consensus 21 ~~~ak~~~~~-~~~~Ai~~~~~ii~~~---~~--~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~ 94 (426)
+.+.+.+.+. -++.|+-...-++... ++ ...+.+.++...+..++.+|+|-.+..+|.+.+... ..++|+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~-k~l~k~~s~ 102 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK-KALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HCC------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHhcCCCc
Confidence 3444444444 3777776666655433 22 256789999999999999999999999999998887 666666544
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhc
Q 014350 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (426)
Q Consensus 95 k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~ 166 (426)
+. .+..-+..|+.. .. .-=..+.+++|.-|.+.|++++|...|+.+....
T Consensus 103 ~~---~~~~~ss~p~s~-~~------------------~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 103 RP---STGNSASTPQSQ-CL------------------PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ------------------CC------------------CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cc---cccccCCCcccc-cc------------------cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 21 111111112100 00 0011346789999999999999999998886553
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.74 E-value=2.6 Score=34.29 Aligned_cols=64 Identities=17% Similarity=0.061 Sum_probs=49.2
Q ss_pred HHHHhhcccCCC-CH---HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 19 LCSILEKGLVET-DP---EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 19 ~~~~~ak~~~~~-~~---~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..|--|-.|..+ ++ ..+|.++++++..+. ..-...++..++--|++.|+|+++..++..++..-
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 344444455554 34 459999999988752 12357899999999999999999999999999986
No 226
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=87.64 E-value=1.5 Score=43.82 Aligned_cols=118 Identities=11% Similarity=0.200 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHH----------HHH
Q 014350 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE----------KCI 97 (426)
Q Consensus 28 ~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~----------k~v 97 (426)
..+++++||+.|.+. ++ ...+..++..+...|+|+++..++...++.. +. +.+. .-.
T Consensus 44 ~~g~~~eAIdsfika-----~D----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~-~~---~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 44 QKGMVKEAIDSYIKA-----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKA-RE---SYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HcCCHHHHHHHHHcC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-cc---chhHHHHHHHHHHhCCH
Confidence 445688888888653 11 1245566667778899999988887777653 11 1111 011
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH-HH--hHHHHHHHHHhccHHHHHHHHHHH
Q 014350 98 NNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-KT--NLKLCKIWFDMGEYGRMSKILKEL 162 (426)
Q Consensus 98 ~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~-r~--~~~La~~~~~~g~~~~A~~ll~el 162 (426)
..+.+++.. |+ ......+-+.+-+.=.+ .+-+.++ +. ..+||..+...|+|++|.+...+.
T Consensus 111 ~e~e~f~~~-pn--~~a~~~IGd~~~~~g~y-eeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 111 AELEEFING-PN--NAHIQQVGDRCYDEKMY-DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHTTTTTC-C------------------CT-TTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHcC-Cc--HHHHHHHHHHHHHcCCH-HHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 112222221 32 11111111111110001 1222222 22 358999999999999998888877
No 227
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.40 E-value=0.74 Score=39.20 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHh
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG-----------KYKEMMDAYREMLTYI 84 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~-----------~~~~l~e~~~~l~~~~ 84 (426)
+++|+..|++.++.+++. ..++.+++.+|.+.| +++++.++|++-+.+-
T Consensus 62 ~~eAi~~le~AL~ldP~~----~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKK----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 679999999999999864 567889999999875 7888888888777775
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.36 E-value=19 Score=35.72 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhh
Q 014350 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (426)
Q Consensus 53 ~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 132 (426)
..+....|++++.+.|+|.+|.+.+..+..-. +.. .+ . .+.++
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-------------------~~~-~~--~---~~kve------------ 178 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVET-------------------YGS-ME--M---SEKIQ------------ 178 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------------CSS-SC--H---HHHHH------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-------------------Hhc-cc--H---HHHHH------------
Confidence 46777889999999999999999998885432 111 11 1 11112
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a 208 (426)
+.+...+++...|||..|..++.++......... + ...+..++.+.++++.+.+||..|-..+..+
T Consensus 179 -----~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~--~---~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 179 -----FILEQMELSILKGDYSQATVLSRKILKKTFKNPK--Y---ESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC--C---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC--c---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2345667889999999999999998764433221 2 2667889999999999999999888777766
No 229
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.14 E-value=0.9 Score=32.51 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=34.2
Q ss_pred HHhcccc-ccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 347 LKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 347 ~~i~~pY-s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
+.++..- ..++..+||+.+|+|...|.+.|..|...|.|..
T Consensus 16 L~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 16 LQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 3444333 4699999999999999999999999999999754
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.77 E-value=1.9 Score=35.53 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 31 DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 31 ~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
|...+|.++++++..+++. ...++..++.-+++.|+|+.+..+...++..-
T Consensus 58 d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4568999999998765432 57889999999999999999999999998875
No 231
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=84.31 E-value=44 Score=35.05 Aligned_cols=194 Identities=10% Similarity=0.051 Sum_probs=100.8
Q ss_pred CCHHHHH-HHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh-h-------hhh---------
Q 014350 30 TDPEGAL-AGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-V-------TRN--------- 91 (426)
Q Consensus 30 ~~~~~Ai-~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~-~-------~k~--------- 91 (426)
++.++|. +.|...+...|.. ...-.+.+.+....|+++.+.+.|...+..+ +. . +.+
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l-~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYELNTKIPEIETTILSCIDRI-HLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHhhhhhhccCcchhhhhhhcc
Confidence 3456776 7777777654422 2334456788889999999999999998764 21 1 100
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhc-cHHHHHHHHHHHHhhcccCC
Q 014350 92 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQRED 170 (426)
Q Consensus 92 ~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g-~~~~A~~ll~el~~~~~~~~ 170 (426)
....+--..+.+.....+ .+....+++.+++... ....++| ...|.+-...| +++.|.+++....+.+.+
T Consensus 432 ~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~-~~~~~ly----i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-- 502 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKK-LVTPDIY----LENAYIEYHISKDTKTACKVLELGLKYFAT-- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGG-GSCTHHH----HHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--
T ss_pred chHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcC-CCChHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--
Confidence 111111112222111111 2333444444433100 0112233 35566655554 488899999888888642
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHh
Q 014350 171 GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (426)
Q Consensus 171 ~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~ 250 (426)
+ ...+ +.-+++....|+..+|+.+++++.+... ++.-...++..-..+....|+...+.+..-.+.+
T Consensus 503 ---~----~~~w---~~y~~fe~~~~~~~~AR~lferal~~~~---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 503 ---D----GEYI---NKYLDFLIYVNEESQVKSLFESSIDKIS---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp ---C----HHHH---HHHHHHHHHHTCHHHHHHHHHHHTTTSS---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred ---c----hHHH---HHHHHHHHhCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 1122 2333455667899999999988754321 1212223333333333444555555544444433
No 232
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=83.69 E-value=2.7 Score=39.94 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=58.8
Q ss_pred CcccHHHHHHHHHHhh---------------CCHHHHHHHHHHhHHHhcCChhHHHHH-HHHHHHHHHHHHHHhccccc-
Q 014350 292 DPEILAMTNLIAAYQR---------------NEIIEFEKILKSNRKTIMDDPFIRNYI-EDLLKNVRTQVLLKLIKPYT- 354 (426)
Q Consensus 292 ~~~~~~l~~L~~af~~---------------~dl~~f~~~l~~~~~~l~~D~~l~~~~-~~L~~~l~~~~l~~i~~pYs- 354 (426)
+|.+..=..+..++.+ +++.+|.++... ...|++..++ +....++|..++..+.+.|.
T Consensus 146 ~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~~ 220 (316)
T 3t5v_A 146 DKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLNK 220 (316)
T ss_dssp SHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5655543456666642 789999886542 1245655443 44578899999999999984
Q ss_pred ---cccchhHHhHhCC-ChHHHHHHHHH
Q 014350 355 ---RIRIPFISKELNV-PEKDVEQLLVS 378 (426)
Q Consensus 355 ---~I~l~~iA~~l~l-~~~evE~~l~~ 378 (426)
+++++++++.|++ ++++++.++..
T Consensus 221 k~~~~pl~~L~~~L~Fds~ee~~~F~~~ 248 (316)
T 3t5v_A 221 KHKPIPFIYLENMLLFNNRQEIIEFCNY 248 (316)
T ss_dssp TCCCEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999 47888777643
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.22 E-value=2.2 Score=35.58 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=50.1
Q ss_pred hHhHHHHhhcccCCC----CHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 16 SRVLCSILEKGLVET----DPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 16 ~~~~~~~~ak~~~~~----~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+.-..|--|-.|..+ |...+|.+++.++..+++. ...++..|+--+++.|+|+.+..+...++..-
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 333344444444333 4578999999998865542 46789999999999999999999999998885
No 234
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.66 E-value=2.2 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=32.3
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
...++..+||+.+|+|...+-..|..|...|.|..
T Consensus 12 ~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 12 HNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp SCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35699999999999999999999999999999974
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.51 E-value=11 Score=32.20 Aligned_cols=69 Identities=7% Similarity=0.086 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 184 ~~l~e~rl~~~~~d~~kak~~l~~a~~i~~~---~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
.+..+++-.+..+-|.-|..+.+.+.+..+. ...|........+-|..++.+++|..|...|.++..-.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3567788888889999998888876555532 33588888888999999999999999999999987543
No 236
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=76.57 E-value=4.1 Score=33.79 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=40.5
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecCC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQVN 393 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~~ 393 (426)
|+..+....++++.+||+.+|+|...+-..+.+|...|.|. +.+|+..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~ 63 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQ 63 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHH
Confidence 44455556799999999999999999999999999999985 4678763
No 237
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=75.14 E-value=7.7 Score=29.07 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=40.1
Q ss_pred hccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
++..-..++..+||+.+|++...+-..|..|...|.|...-|.....+.+++
T Consensus 32 ~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~ 83 (99)
T 3cuo_A 32 MLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKN 83 (99)
T ss_dssp HHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECC
T ss_pred HHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEECh
Confidence 3333457899999999999999999999999999999776554433444433
No 238
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=74.78 E-value=5.2 Score=32.89 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
.|+..+....+++...||+.+|+|...+-..|.+|...|.|. +.+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344555556789999999999999999999999999999996 457765
No 239
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=74.42 E-value=9.5 Score=32.44 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=39.6
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
|+..+..-.+++...||+.+|+|...+-..|.+|...|.|. +.+|+.
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34444455689999999999999999999999999999995 567765
No 240
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.85 E-value=5.3 Score=33.54 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
|+..+....+++..+||+.+|+|...+-+.+.+|...|.|. +.+|+.
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 44455556789999999999999999999999999999985 567755
No 241
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=72.83 E-value=13 Score=28.74 Aligned_cols=55 Identities=7% Similarity=-0.005 Sum_probs=42.7
Q ss_pred Hhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 348 KLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 348 ~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
..+.|=.++ +...||+.||+|..-|.+-+..|..+|.|..+-.-..|+.+.....
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~ 90 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNN 90 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCH
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCH
Confidence 555676777 9999999999999999999999999999866432245765554443
No 242
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.55 E-value=5.6 Score=32.86 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=39.7
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
|+..+....+++..+||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 44555556899999999999999999999999999999985 457765
No 243
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=71.43 E-value=7 Score=29.34 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=38.8
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEE---ecCCCEEEEec
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHI---DQVNRLLERGD 400 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akI---D~~~g~v~~~~ 400 (426)
...+++.+||+.+|++...+-..|.+|...|.|...- |.....+..++
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~ 78 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITD 78 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECH
Confidence 3578999999999999999999999999999998766 43333444444
No 244
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=71.18 E-value=12 Score=28.16 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=36.9
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~ 397 (426)
..++..+||+.+|++...+-+.|..|...|.|..+-+.......
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 68999999999999999999999999999999876544333333
No 245
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=71.12 E-value=4.6 Score=30.21 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=33.7
Q ss_pred HhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 348 ~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
.+++.-. ++...||+.||++...|-+.|-+|-.+|.|..
T Consensus 24 ~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 24 KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4444433 99999999999999999999999999999965
No 246
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=70.84 E-value=4.8 Score=33.94 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=42.6
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecCC
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQVN 393 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~~ 393 (426)
+.|+..++.-.+++...||+.+|+|+..+-..+-+|...|.|. +.+|+..
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 3456666667899999999999999999999999999999985 6788653
No 247
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=70.49 E-value=10 Score=30.55 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..+++.++...+..-..|=.++ +...||+.||+|..-|.+-+..|..+|.|.. .+..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 4555666555445556777899 9999999999999999999999999999854 5667776654
No 248
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=70.29 E-value=8.9 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=39.3
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe--cCCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID--QVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID--~~~g~v~~~~~ 401 (426)
...++...||+.+|++...+-..|.+|...|.|...-+ +..+.+..+.+
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~ 82 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEK 82 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECC
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCc
Confidence 45799999999999999999999999999999976655 33444444443
No 249
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=70.22 E-value=7.6 Score=32.00 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=39.2
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
|+..+....++++.+||+.+|+|...+-..|.+|...|.|. +.+|+.
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 34444445789999999999999999999999999999994 566765
No 250
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=70.09 E-value=7.5 Score=31.20 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=35.9
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++.+.||+.+|+|...+.+.+..|...|.|...=....|+ ...++
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy-~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGY-VLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCE-EESSC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCce-EeCCC
Confidence 568999999999999999999999999999987643333344 44443
No 251
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=69.98 E-value=9.6 Score=29.93 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
..+++.++..-...-..|=.++ +...||+.||+|..-|.+-+..|..+|.|.. .+..|+.+...
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~--~~~~G~~V~~~ 76 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEK--RRGLGMLVKAG 76 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECTT
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEeCC
Confidence 3455566555555556777888 8999999999999999999999999999854 36677765543
No 252
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=69.63 E-value=18 Score=28.98 Aligned_cols=49 Identities=8% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYR----LGKYKEMMDAYREMLTY 83 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~----~~~~~~l~e~~~~l~~~ 83 (426)
..|+++|++.|++..+.. ...+..+++.+|.. .++++++.+++++-...
T Consensus 74 ~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 345666666666665432 13455666666666 66666666666655443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=68.03 E-value=31 Score=31.79 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~ 87 (426)
++.+++++|++....-|+.+|.+ .+.=..+.++++-.|+|+.+...++.+.++. +.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~d----a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDGDFERADEQLMQSIKLF-PE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-ch
Confidence 56778999999999999999865 3344568899999999999999999998886 44
No 254
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=67.86 E-value=9.7 Score=31.19 Aligned_cols=49 Identities=10% Similarity=-0.056 Sum_probs=40.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeE--EEecCCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a--kID~~~g~v~~~~~ 401 (426)
..-.+.+.||+.+|+++.+|.+.|.+|+..|-|.= +.|..++.....+-
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL 99 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL 99 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeH
Confidence 45679999999999999999999999999999864 66776666555554
No 255
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=67.80 E-value=26 Score=29.30 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHhc---cHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 137 KTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 137 r~~~~La~~~~~~g---~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+..++|-.+...+ +++++..+|+++..... + ...-+.+..-.-.|.+.+||.+|+.+.+.+..+.
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~------p----~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS------K----EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC------H----HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC------c----cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45567777777776 77899999999988731 1 1233455555567899999999999999887764
No 256
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=67.44 E-value=5.4 Score=34.06 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
|+..+....++++.+||+.+|+|+..+-..|.+|...|.|. +.+|+.
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 34444455799999999999999999999999999999984 567764
No 257
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=67.40 E-value=3.5 Score=32.10 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
+..+..+=..++...||+.+|+|...|-+.|..|...|.|...
T Consensus 24 l~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 24 LRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3334445446899999999999999999999999999999754
No 258
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=67.21 E-value=9.5 Score=31.61 Aligned_cols=46 Identities=4% Similarity=-0.060 Sum_probs=36.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++.+.||+.+++|+..+++.+.+|...|.|...=. .|-....++
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~ 74 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKD 74 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCC
Confidence 5799999999999999999999999999999976544 454455554
No 259
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=66.76 E-value=8.8 Score=29.82 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=34.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
..+++..||+.+|++...+-..|..|...|.|..+-|.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 56899999999999999999999999999999876553
No 260
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=66.56 E-value=6.2 Score=32.62 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=41.5
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+.+..+...... +.+.||+.+++|+..+++.+.+|...|.|...=. ..|+ ...++
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy-~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGA-SLKKD 67 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSC-EESSC
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCc-eecCC
Confidence 344545544445 9999999999999999999999999999976544 4444 55444
No 261
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=66.16 E-value=22 Score=26.89 Aligned_cols=48 Identities=6% Similarity=0.077 Sum_probs=39.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
...++.+||+.+|++...+-+.|..|...|.|..+-+........+++
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA 82 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence 458999999999999999999999999999998766555444444443
No 262
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.82 E-value=5.8 Score=32.83 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=39.0
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee---EEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID---GHIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~---akID~~ 392 (426)
|+..+....++++..||+.+|+|...+-..+.+|...|.|. +.+|+.
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34444445789999999999999999999999999999984 567753
No 263
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.49 E-value=12 Score=29.97 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..+++.|+...+..-..|=.++ +...||+.||+|...|.+-+..|..+|.|.. .+..|+.+..
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 79 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE--ecCCEEEEec
Confidence 4555666555455555677888 6999999999999999999999999998865 3556776654
No 264
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=65.41 E-value=28 Score=31.28 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=38.6
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
.....+...||+.+|+|+.+|+..|.+|...|-+. -..+|.|.+.+
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 35789999999999999999999999999999987 33566666644
No 265
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=65.28 E-value=21 Score=27.37 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
..+++.+||+.+|++...+-..|..|...|.|..+-+.
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 46899999999999999999999999999999876553
No 266
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.18 E-value=6 Score=32.59 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=39.7
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE---EEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG---HIDQV 392 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a---kID~~ 392 (426)
|+..+..-.+++...||+.+|+|...+-..+.+|...|.|.. .+|+.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 445555566899999999999999999999999999999964 67764
No 267
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=65.13 E-value=19 Score=27.05 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=36.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++..+||+.+|++...+-+.|..|...|.|...- |...+.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 568999999999999999999999999999997532 55555554
No 268
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=64.44 E-value=11 Score=28.41 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~ 393 (426)
..+......++..+||+.+|++...+-..|..|...|.|...-+..+
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 33443356799999999999999999999999999999987655443
No 269
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=64.06 E-value=17 Score=29.36 Aligned_cols=63 Identities=5% Similarity=0.001 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..+++.++..-+..-..|=.++ +...||+.||+|..-|.+-+..|..+|.|.. .+..|+.+..
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~~ 70 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEec
Confidence 3455555544444455677888 8999999999999999999999999999854 4666776543
No 270
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=63.81 E-value=18 Score=27.25 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHH
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl 191 (426)
|..+.-|+-++..|+|.+|.-+++++...+..+ . ....+++++.+.+-
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~----~---i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNLSDNE----E---IKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----H---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHccccCH----H---HHHHHHHHHHHHHH
Confidence 445677788999999999999999999886532 2 35577888888764
No 271
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=63.44 E-value=14 Score=29.49 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=37.6
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
....++..+||+.++++...+-..|.+|...|.|.-.-|..++
T Consensus 42 ~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 42 KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3457999999999999999999999999999999877775544
No 272
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=63.02 E-value=9.1 Score=30.84 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=38.3
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
+..+.... ++...||+.+|++...+-..|.+|...|.|.-.-|..++ .+..+++
T Consensus 44 L~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~ 100 (146)
T 3tgn_A 44 LMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDL 100 (146)
T ss_dssp HHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGG
T ss_pred HHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHh
Confidence 33444455 999999999999999999999999999999877755444 4455544
No 273
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=62.77 E-value=17 Score=29.14 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=40.8
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++..+||+.+|++...+-..|.+|...|.|.-.-|..++ .+..++.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~ 99 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEK 99 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHH
Confidence 678999999999999999999999999999999877765444 4555443
No 274
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.61 E-value=17 Score=28.72 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=39.0
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
....++..+||+.+|++...+-..|.+|...|.|.-.-|..++-
T Consensus 40 ~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 40 REPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 34679999999999999999999999999999998877776654
No 275
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=62.53 E-value=19 Score=30.34 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=38.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++.+.||+.+++|+..+++.+.+|...|.|..+=....|+ ...++
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy-~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGY-VLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEE-EECSC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCce-EecCC
Confidence 469999999999999999999999999999998774444444 44444
No 276
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=62.53 E-value=23 Score=28.02 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=38.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
...++..+||+.+|++...+-..|.+|...|.|.-..|..++-
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 3479999999999999999999999999999998877766553
No 277
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.44 E-value=24 Score=34.22 Aligned_cols=133 Identities=9% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhh-----------
Q 014350 62 KLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK----------- 130 (426)
Q Consensus 62 ~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----------- 130 (426)
+.+..-+..+...+.|..+..-+...++.-+..+++-.+. ...++ .+...++++.....+....
T Consensus 47 ~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~---~~~~d--~~~al~~L~~~~~~~~~~~~~~~~~~~~~~ 121 (393)
T 4b4t_O 47 KFFDDAKSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASL---KDSKD--FDESLKYLDDLKAQFQELDSKKQRNNGSKD 121 (393)
T ss_dssp HHHCCCSSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHH---HHTTC--HHHHHHHHHHHTTTSHHHHSSCCCCCCSSS
T ss_pred HHHhChhcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhcCC--HHHHHHHHHHHHHHHhhhhhhhhcccchhh
Confidence 3333334445556677776666544444444444332222 22233 3333444333222221110
Q ss_pred hhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHH
Q 014350 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (426)
Q Consensus 131 ~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~ 203 (426)
...-.+.+...++++|+..|+.++|.+++.++.......++. +. .....++-.-++++...+++..+..
T Consensus 122 ~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~-~~---~v~~~~y~~~~~~~~~~~~~a~~y~ 190 (393)
T 4b4t_O 122 HGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI-PL---RITNSFYSTNSQYFKFKNDFNSFYY 190 (393)
T ss_dssp SCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS-SS---HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc-cH---HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 011234556688999999999999999999999876654433 21 3345555555667777777765543
No 278
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=62.35 E-value=16 Score=29.61 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..+++.|+...+.--+.|=.++ +...||+.||+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~ 80 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeC
Confidence 4566666665556667788888 88999999999999999999999999998654 666776643
No 279
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=62.29 E-value=14 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=41.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++...||+.+|++...+-..|.+|...|.|.-..|..++ .+..+++
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~ 97 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTG 97 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHH
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChh
Confidence 456899999999999999999999999999999887776665 4555544
No 280
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=62.02 E-value=8.2 Score=31.29 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=35.7
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
|+..+..-.++++.+||+.+|+|...+-+.+.+|...|.|..
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 344444557899999999999999999999999999999853
No 281
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.48 E-value=23 Score=28.04 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=38.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
...++..+||+.++++...+-..|.+|...|.|.-..|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4569999999999999999999999999999998877766553
No 282
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.16 E-value=14 Score=29.59 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=42.1
Q ss_pred cccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
.....++...||+.+|++...+-..|.+|...|.|.-..|..++ .+..++.
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~ 101 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPK 101 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHh
Confidence 45678999999999999999999999999999999876654443 5666655
No 283
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=60.53 E-value=4.6 Score=31.07 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 336 ~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
.+.+.++...+.....|=..+ +...||+.||+|...|.+.+..|...|.|.. -+..|+.+..
T Consensus 15 ~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 455555543333344566788 9999999999999999999999999999864 3445655443
No 284
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=60.23 E-value=20 Score=29.44 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHhccc--cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 345 VLLKLIKP--YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 345 ~l~~i~~p--Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
.+..+... -..++.+.||+.+|+|+..+++.+.+|-..|.|..+=.. +|-....+++
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~-~GGy~Lar~p 74 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGA-KGGYQLRVPA 74 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSS-SSEEEESSCG
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCC-CCCeeecCCc
Confidence 44444432 246999999999999999999999999999998865333 3445555543
No 285
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=60.19 E-value=22 Score=27.36 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=41.2
Q ss_pred cccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...+++.+||+.+ |++...+-..|.+|...|.|..+.|..++ .+..+++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 4678999999999 99999999999999999999988886655 3444444
No 286
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=60.12 E-value=48 Score=27.84 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=51.1
Q ss_pred hhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 014350 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (426)
Q Consensus 133 kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i 211 (426)
+.|.++-++.|.+ ++.+|.++|-++++.....+. .. -.+++.-+++-.+.||+.+|+.++.+|...
T Consensus 58 rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-----------kF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-----------KF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT-----------TB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH-----------HH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5666777788866 677999999999999987632 22 456666667888999999999999988653
No 287
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.02 E-value=26 Score=27.89 Aligned_cols=43 Identities=23% Similarity=0.138 Sum_probs=38.4
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
...++...||+.++++...+-..|.+|...|.|.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999999999999999999999998887766653
No 288
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=59.71 E-value=20 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=34.7
Q ss_pred hccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
-+.+=...+...||..||++..+|-+.|-+|-..|.+...
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 4445566999999999999999999999999999988654
No 289
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=58.36 E-value=16 Score=29.60 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=41.8
Q ss_pred hccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
.+.....++...||+.++++...+-..|.+|...|.|.-.-|..++ .+.+++.
T Consensus 45 ~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~ 100 (155)
T 1s3j_A 45 SLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDE 100 (155)
T ss_dssp HHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHH
Confidence 3333557999999999999999999999999999999877665444 4555443
No 290
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=58.28 E-value=17 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=40.3
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++...||+.++++...+-..|.+|...|.|.-.-|..++ .+..++.
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~ 92 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEK 92 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHH
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChh
Confidence 457899999999999999999999999999999877765544 4455443
No 291
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=57.86 E-value=28 Score=26.66 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=34.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
..++..+||+.+|++...+-..|..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999987666
No 292
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=57.50 E-value=24 Score=26.40 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=41.9
Q ss_pred cccccchhH----HhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 353 YTRIRIPFI----SKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~i----A~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
...++..+| |+.++++...+-..|-+|...|.|.-..|.....+..+++
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~ 72 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEK 72 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHH
Confidence 467899999 9999999999999999999999998888876666666654
No 293
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=57.29 E-value=21 Score=28.01 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=34.9
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
..++..+||+.+|++...+-+.|..|...|.|..+-+.
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 56799999999999999999999999999999887774
No 294
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=57.19 E-value=14 Score=29.25 Aligned_cols=42 Identities=2% Similarity=0.133 Sum_probs=37.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
...++..+||+.+|++...+-..|.+|...|.|.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 457999999999999999999999999999999877665544
No 295
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=57.09 E-value=16 Score=28.83 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHhccccccccchhHHhHh--CCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 345 VLLKLIKPYTRIRIPFISKEL--NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l--~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.|+.++....+++...||+.+ |++...|-+.|.+|...|.|... ..|+..+++.
T Consensus 17 ~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~ 72 (111)
T 3b73_A 17 RILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVITEE 72 (111)
T ss_dssp HHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEECHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEECch
Confidence 334555555699999999999 99999999999999999999874 5665565543
No 296
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.99 E-value=39 Score=25.15 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 198 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 198 ~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
..+|+..++++....+.. + . -....|..++..++|.+|..++....+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~--~--r--A~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYN--E--A--ALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTC--H--H--HHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCC--H--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 689999999997764321 2 1 2234588999999999999999998764
No 297
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=56.83 E-value=18 Score=29.80 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=41.9
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
....++...||+.++++...+-..|-+|...|.|.-.-|..++ .|..+++
T Consensus 57 ~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 109 (162)
T 3k0l_A 57 AKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPS 109 (162)
T ss_dssp HCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHh
Confidence 3457999999999999999999999999999999888776665 4555543
No 298
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.34 E-value=14 Score=29.69 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=40.5
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe---cCCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID---QVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID---~~~g~v~~~~~ 401 (426)
...++..+||+.++++...+-..|-+|...|.|.-.-| +....|..+++
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~ 100 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDK 100 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHH
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHH
Confidence 46799999999999999999999999999999986664 44446666654
No 299
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=56.20 E-value=16 Score=29.56 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=42.0
Q ss_pred hccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 349 LIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 349 i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
.+.....++..+||+.+|++...+-..|.+|...|.|.-.-|..++ .+..++.
T Consensus 48 ~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~ 103 (152)
T 3bj6_A 48 GLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPR 103 (152)
T ss_dssp HHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHH
T ss_pred HHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChh
Confidence 3334457999999999999999999999999999999876654443 5666554
No 300
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=55.47 E-value=19 Score=27.02 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=39.1
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.++..+||+.++++...+-..|.+|...|-|...-|+-...|..+++
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~ 76 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDK 76 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChh
Confidence 39999999999999999999999999999995445555556666654
No 301
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=55.16 E-value=16 Score=29.73 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=39.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeE--EEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a--kID~~~g---~v~~~~~ 401 (426)
...++..+||+.++++...+-..|.+|...|.|.- .-|..++ .+..+++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~ 106 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKK 106 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHH
Confidence 45699999999999999999999999999999987 6666555 5666554
No 302
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=54.83 E-value=15 Score=27.18 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHhccccccccchhHHhHhCCChH-HHHHHHHHhHHcCcee
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEK-DVEQLLVSLILDNRID 386 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~-evE~~l~~lI~~g~i~ 386 (426)
+.+++--...+...||+.||++.. .|-..|..|-.+|.|.
T Consensus 17 L~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 17 CDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 456666677899999999999999 9999999999999997
No 303
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=54.70 E-value=30 Score=27.70 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=39.3
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++..+||+.++++...+-..|.+|...|.|.-.-|..++ .+..+++
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~ 105 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEK 105 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHH
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHh
Confidence 457999999999999999999999999999999877665554 3444443
No 304
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=54.69 E-value=24 Score=27.97 Aligned_cols=47 Identities=9% Similarity=0.139 Sum_probs=39.8
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
.++...||+.++++...+-..|-+|...|.|.-.-|..++ .+..+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~ 99 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKK 99 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHH
Confidence 7999999999999999999999999999999877765554 5555543
No 305
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=54.34 E-value=24 Score=28.31 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=39.5
Q ss_pred cccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.....++...||+.+|++...+-..|.+|...|.|.-. +++.+..+++
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~ 65 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSK 65 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHH
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchh
Confidence 34467999999999999999999999999999998654 3466776654
No 306
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=54.17 E-value=11 Score=30.27 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=29.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
...++...||+.+|++...+-..|.+|...|.|.-.-|..++
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 457999999999999999999999999999999877666555
No 307
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=54.02 E-value=20 Score=28.42 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=39.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
..++..+||+.++++...+-..|.+|...|.|.-.-|..++ .|..+++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~ 96 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTS 96 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHH
Confidence 38999999999999999999999999999999877666554 4555543
No 308
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=54.01 E-value=77 Score=24.91 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=33.3
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
...++..||+.+|++...+-+.|..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4588999999999999999999999999999977554
No 309
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=53.79 E-value=76 Score=32.90 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
.+||+.+++.|+++.|...+..+...
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~ 710 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDL 710 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccCh
Confidence 57899999999999999998887544
No 310
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=53.63 E-value=18 Score=28.99 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=41.4
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
+.++.....++..+||+.++++...+-..|.+|...|.|.-.-|..++ .|..+++
T Consensus 42 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~ 99 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQ 99 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChH
Confidence 344444568999999999999999999999999999999877655554 6666654
No 311
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=53.63 E-value=22 Score=28.48 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=39.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec---CCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ---VNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~---~~g~v~~~~~ 401 (426)
...++...||+.+|++...+-..|.+|...|.|.-..|. ....+..+++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~ 99 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSE 99 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHH
Confidence 567999999999999999999999999999999766554 3445666554
No 312
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=53.50 E-value=15 Score=29.54 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=37.1
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC---CEEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~---g~v~~~~~ 401 (426)
....++..+||+.++++...+-..|.+|...|.|.-.-|..+ ..|..+++
T Consensus 51 ~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~ 103 (148)
T 3nrv_A 51 SASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEM 103 (148)
T ss_dssp HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHH
T ss_pred cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHh
Confidence 345899999999999999999999999999999976655444 44555543
No 313
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=53.25 E-value=41 Score=26.49 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=32.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
...+++.+||+.+|++...+-..|..|...|.|...-+
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 35689999999999999999999999999999976533
No 314
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=53.21 E-value=17 Score=29.17 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=40.4
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++..+||+.++++...+-..|.+|...|.|.-.-|..++ .|..+++
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~ 94 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTET 94 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChh
Confidence 345999999999999999999999999999999865554444 5666654
No 315
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.99 E-value=25 Score=28.56 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=40.1
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++...||+.++++...+-..|.+|...|.|.-.-|..++ .+..++.
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 107 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEK 107 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHH
Confidence 347999999999999999999999999999999877755444 4555443
No 316
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=52.91 E-value=15 Score=25.23 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=30.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
--+.++..|+.+|++.++|-..|-+|=..|.|.
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 357889999999999999999999999999875
No 317
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=52.66 E-value=22 Score=30.89 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=33.3
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
.+++...||+.+|+|...+-..|.+|...|.|...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999999999999999765
No 318
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=52.35 E-value=11 Score=27.55 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
|-+.++..||..+|++.++||..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999988754
No 319
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=52.20 E-value=22 Score=29.54 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=40.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++..+||+.+|++...+-..|.+|...|.|.-..|..++ .|..++.
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~ 108 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKR 108 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHH
Confidence 457999999999999999999999999999999877776554 4444443
No 320
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.90 E-value=2.8e+02 Score=30.67 Aligned_cols=204 Identities=14% Similarity=0.156 Sum_probs=96.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhh------------h-----hhhHHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 014350 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSA------------V-----TRNYSEKCINNIMDFVSGSASQNFSLLREFYQ 120 (426)
Q Consensus 58 ~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~------------~-----~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~ 120 (426)
.-+|.+|...|++++|.+++.+-..-+... + ..+....=...++..+++..- .+...++..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~--~~~vi~fa~ 923 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA--YIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC--CHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 446888899999999999886542111000 0 000001112233333433221 345555555
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHH---HH-H-hh
Q 014350 121 TTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ---MY-T-ET 195 (426)
Q Consensus 121 ~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~r---l~-~-~~ 195 (426)
.+++.... .+..+-..+..++-+.+++.|+|++|-..|........ -+..-+.++....+... ++ + ..
T Consensus 924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~------r~~cLr~LV~~lce~~~~~~L~~lpf~ 996 (1139)
T 4fhn_B 924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL------KKSCLLDFVNQLTKQGKINQLLNYSMP 996 (1139)
T ss_dssp HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS------CHHHHHHHHHHHHHHCCHHHHHHHTTT
T ss_pred HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHhCCChhhhhCCCCc
Confidence 55443211 12222223445667788999999999877765543211 01011222222221111 11 1 12
Q ss_pred cCHHHHHHHH-HHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhhhhhh----cch-hHHHHHHHHHH
Q 014350 196 KNNKKLKQLY-QKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA----GNQ-RRIQCLKYLVL 269 (426)
Q Consensus 196 ~d~~kak~~l-~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~~~~~----~~~-~~~~~lky~~L 269 (426)
|.......++ .+|++.......|.....+| -.|+..+||+.|+...|+-...+... +.. ...++--|+++
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLY----s~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~yL~~ 1072 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILF----SWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEHYLIV 1072 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHH----HHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhH----hhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHH
Confidence 4445554444 34555432222233222222 23456899999999999975544321 111 22233347766
Q ss_pred HHHhh
Q 014350 270 ANMLM 274 (426)
Q Consensus 270 ~~lL~ 274 (426)
...|+
T Consensus 1073 INaLs 1077 (1139)
T 4fhn_B 1073 LNTLE 1077 (1139)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66665
No 321
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=51.23 E-value=21 Score=28.50 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=40.1
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++...||+.++++...+-..|.+|...|.|.-.-|..++ .+..+++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~ 100 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 100 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHH
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChH
Confidence 456999999999999999999999999999999877765444 4444443
No 322
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=50.94 E-value=24 Score=28.91 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=39.4
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec---CCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ---VNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~---~~g~v~~~~~ 401 (426)
...++..+||+.+|++...+-..|.+|...|.|.-.-|. ....+..++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 115 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPA 115 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH
Confidence 457999999999999999999999999999999876644 3345555543
No 323
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=50.86 E-value=20 Score=29.11 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe---cCCCEEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID---QVNRLLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID---~~~g~v~~~~~ 401 (426)
+.++.....++..+||+.+|++...+-..|.+|...|.|.-..| +....+.+++.
T Consensus 49 L~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~ 106 (155)
T 3cdh_A 49 LACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDD 106 (155)
T ss_dssp HHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHH
T ss_pred HHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHH
Confidence 33444456799999999999999999999999999999975544 44445666654
No 324
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=50.69 E-value=39 Score=32.57 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=45.5
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
+..+++.+|+..+...+..++-+ .....++...+...|+..++++.|..+...+
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~----E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYR----EPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45678899999998888877633 5678889999999999999999999998876
No 325
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=50.18 E-value=42 Score=30.15 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
+..+++.|+..-. . ..|=.++ +-..||+.+|+|..-|.+-|..|..+|.|.. +..|+.+...
T Consensus 16 y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 16 HQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 3455666655444 5 7777899 9999999999999999999999999999976 8888776544
No 326
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=50.14 E-value=19 Score=29.44 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=39.5
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++..+||+.++++...+-..|.+|...|.|.-.-|..++ .|..+++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 113 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEK 113 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHH
Confidence 467999999999999999999999999999999877765555 5555544
No 327
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.04 E-value=48 Score=22.28 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHhccccccccchhHHhHh-----CCChHHHHHHHHHhHHcCceeEEEecCCCEEE
Q 014350 342 RTQVLLKLIKPYTRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE 397 (426)
Q Consensus 342 ~~~~l~~i~~pYs~I~l~~iA~~l-----~l~~~evE~~l~~lI~~g~i~akID~~~g~v~ 397 (426)
|...|..++..-..++.++|++.| +++..-|-..|-+ .|.+ ++..++|...
T Consensus 6 R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~ 61 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCcee
Confidence 334455555555689999999999 9999999988884 4666 6666666544
No 328
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=49.85 E-value=1.3e+02 Score=26.95 Aligned_cols=70 Identities=20% Similarity=0.034 Sum_probs=42.8
Q ss_pred cccchhHHhHh----CCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec-C---chhhHHHH--HhcCceeehhhhhhh
Q 014350 355 RIRIPFISKEL----NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD-R---SAYLTFLL--LKKNAYLTCSYLVSE 424 (426)
Q Consensus 355 ~I~l~~iA~~l----~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~-~---~~~~~~~~--~~~~~~~~~~~~~~~ 424 (426)
-|+++++-.++ .++++++.+-+-++=.- .=.-.|+-. |.-.+.. | ...++.++ -.++||+|++-|...
T Consensus 113 li~l~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v~~v~-g~~~vqsvp~el~~D~~~vLe~a~~~g~vt~~~L~~~ 190 (233)
T 1u5t_A 113 VISFQELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEIFQIR-GKKFLRSVPNELTSDQTKILEICSILGYSSISLLKAN 190 (233)
T ss_dssp CEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCEEEET-TEEEECCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHH
T ss_pred eeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEEEEEC-CEEEEEeCCCccchHHHHHHHHHHhcCcCcHHHHHHH
Confidence 67888888877 57999999888776443 112244422 3333322 2 22233332 245899999999988
Q ss_pred cC
Q 014350 425 LG 426 (426)
Q Consensus 425 ~~ 426 (426)
+|
T Consensus 191 lg 192 (233)
T 1u5t_A 191 LG 192 (233)
T ss_dssp HC
T ss_pred hC
Confidence 76
No 329
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=49.63 E-value=18 Score=27.09 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=37.5
Q ss_pred cccchhHHhHhCCChHH-HHHHHHHhHHcCcee-EEEecCCCEEEEecC
Q 014350 355 RIRIPFISKELNVPEKD-VEQLLVSLILDNRID-GHIDQVNRLLERGDR 401 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~e-vE~~l~~lI~~g~i~-akID~~~g~v~~~~~ 401 (426)
.++..+||+.++++... +-..|.+|...|.|. ..-|+....+..+++
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~ 78 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEK 78 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHh
Confidence 69999999999999999 999999999999997 223444445555554
No 330
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=49.43 E-value=29 Score=29.57 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=42.2
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
|...++...||+.++++...+-..|.+|...|.|.-.-|..++ .|..+++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 106 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDL 106 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHH
Confidence 4568999999999999999999999999999999888877665 4444443
No 331
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=49.37 E-value=34 Score=26.45 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=37.8
Q ss_pred ccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 354 s~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
..+++.+||+.+ |++...+-..|.+|...|.|.-..|..++-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 568999999999 999999999999999999999888766553
No 332
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=49.13 E-value=21 Score=28.92 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=37.8
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++..+||+.++++...+-..|.+|...|.|.-..|..++ .+..++.
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~ 110 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTET 110 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHH
Confidence 467999999999999999999999999999999876654444 5555543
No 333
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=49.05 E-value=15 Score=29.54 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..+++.|+..-+..-..|=.++ +...||+.||+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 3455555555455556777899 89999999999999999999999999998654 666766543
No 334
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=48.59 E-value=1.9e+02 Score=27.63 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=52.0
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.++.+...++..++..|++.+|...++.+...-.- ++ +.+...|+.+.+.|+...|...|+..+...
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~----~E--------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY----RE--------PLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CH--------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44556678999999999999999999888665210 12 366777889999999999999999886643
No 335
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=48.56 E-value=17 Score=29.49 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=37.6
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
....++...||+.++++...+-..|-+|...|.|.-.-|..++ .|..+++
T Consensus 52 ~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~ 104 (149)
T 4hbl_A 52 EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDN 104 (149)
T ss_dssp HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHH
Confidence 3467999999999999999999999999999999766554444 5666654
No 336
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=48.44 E-value=80 Score=25.22 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=38.1
Q ss_pred cccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
....++.+|++.+ |++..-+-..|.+|...|.|.-+.|..++
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 4678999999999 79999999999999999999988887665
No 337
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.22 E-value=20 Score=29.32 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=36.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC---CEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~---g~v~~~~~ 401 (426)
...++...||+.+|++...+-..|.+|...|.|.-.-|..+ ..+..++.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~ 112 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPA 112 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHH
Confidence 56899999999999999999999999999999976654444 34455443
No 338
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=48.14 E-value=37 Score=26.53 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=40.6
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHHHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFLLL 410 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~ 410 (426)
...+..+||+.+|++...+-+.|..|...|.|..+-+. .++...-.+......+..
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~~~~~~~~~ 88 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG-RQVRYALADSHLARALGE 88 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS-SSEEEEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC-CEEEEEEChHHHHHHHHH
Confidence 34788999999999999999999999999999876543 333333334344444443
No 339
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=47.29 E-value=36 Score=24.94 Aligned_cols=40 Identities=18% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCce
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
|..+-+.=+-++-..||+.+|++..+|.+.+-+|=-+|+|
T Consensus 25 Le~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 25 LQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 3444444567888999999999999999999999999886
No 340
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=46.89 E-value=59 Score=25.61 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=33.3
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV 392 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~ 392 (426)
++...||+.++++...|-+.|..|...|.|.-.-+..
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~ 79 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNL 79 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCcc
Confidence 9999999999999999999999999999997654433
No 341
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=46.53 E-value=35 Score=28.61 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=38.8
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
=..++.+.||+.+++|+..+++.+.+|-..|.|..+=-. +|-....+++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~-~GGy~Lar~p 74 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGK-NGGYQLDLAL 74 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECST-TCEEECCSCG
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCC-CCCeEecCCh
Confidence 356999999999999999999999999999999765333 3444555443
No 342
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=46.08 E-value=46 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=37.4
Q ss_pred cccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
...+++.+|++.+ |++...+-..|.+|...|.|.-+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4578999999999 59999999999999999999988876654
No 343
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=45.78 E-value=31 Score=27.47 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=40.3
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..+.+.-..+++.+||+.+|++...+-..|.+|...|.|.-. + +.+..++.
T Consensus 23 ~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~~ 73 (139)
T 2x4h_A 23 KRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITNN 73 (139)
T ss_dssp HHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECHH
T ss_pred HHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEChh
Confidence 334445568999999999999999999999999999988642 2 55666654
No 344
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=45.55 E-value=4.4 Score=37.50 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEec
Q 014350 354 TRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 354 s~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
.=|+++.|++.+ ++++++|.+.|-.|+.+|.|+-.||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568888999988 79999999999999999999999985
No 345
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=45.08 E-value=50 Score=29.50 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
..+.+.++..-...-..|=.++ +...||+.+|+|..-|.+-+..|..+|.|.. -+..|+.+...
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~~ 77 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYR--LKGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CTTSCEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--eCCCeEEEeCC
Confidence 3455555544444455677888 8999999999999999999999999999864 36678766543
No 346
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=44.91 E-value=1.9e+02 Score=26.67 Aligned_cols=129 Identities=9% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHhhhhhhhhH--------------
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYK--EMMDAYREMLTYIKSAVTRNY-------------- 92 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~--~l~e~~~~l~~~~~~~~~k~~-------------- 92 (426)
+.+++++++.+.++++.++.+ +.+-.+-+-+....|+|+ +.++++..++... +....+-
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkn----y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKN----HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Q ss_pred ----HHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHH---------------HHhHHHHHHHHHhccHH
Q 014350 93 ----SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF---------------KTNLKLCKIWFDMGEYG 153 (426)
Q Consensus 93 ----~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~---------------r~~~~La~~~~~~g~~~ 153 (426)
..+.+.-+-..+...|+ ....=.....++..+......-.-+ ....-||.++.+.|+++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~--n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ--NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC--CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Q ss_pred HHHHHHHHHHh
Q 014350 154 RMSKILKELHK 164 (426)
Q Consensus 154 ~A~~ll~el~~ 164 (426)
+|.+++..+..
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
No 347
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=44.45 E-value=22 Score=28.74 Aligned_cols=54 Identities=9% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE--EEecCCC---EEEEecC
Q 014350 347 LKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNR---LLERGDR 401 (426)
Q Consensus 347 ~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a--kID~~~g---~v~~~~~ 401 (426)
+..+ ....++...||+.++++...+-..|.+|...|.|.- ..|..++ .|..+++
T Consensus 44 L~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~ 102 (151)
T 3kp7_A 44 LNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNK 102 (151)
T ss_dssp HHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHH
T ss_pred HHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHh
Confidence 3344 567899999999999999999999999999999985 2355444 4555543
No 348
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=44.42 E-value=28 Score=33.68 Aligned_cols=43 Identities=7% Similarity=0.176 Sum_probs=37.6
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
.+++++.....+|-.+||+.+|+|...|-..+.+|+..|.|..
T Consensus 20 ~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3556666678999999999999999999999999999999853
No 349
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=44.38 E-value=32 Score=27.35 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=37.4
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
..++..+||+.+|+|...+-..|.+|...|-|.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 57999999999999999999999999999999888776654
No 350
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=44.17 E-value=88 Score=29.17 Aligned_cols=88 Identities=9% Similarity=0.121 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRL-----GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~-----~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~ 106 (426)
...|...++++++.++.-. .-.+..-++.+|... |+.+++.+++++-+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---------------------- 234 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---------------------- 234 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----------------------
Confidence 4789999999999987521 145777889999984 99999999999988885
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH-hccHHHHHHHHHHHHhhccc
Q 014350 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD-MGEYGRMSKILKELHKSCQR 168 (426)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~-~g~~~~A~~ll~el~~~~~~ 168 (426)
|+.+. . .+.-.|+++.. .|++++|...|++....-..
T Consensus 235 -P~~~i--------------d----------~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 235 -SAHDP--------------D----------HHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp -CTTCS--------------H----------HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred -CCCCc--------------h----------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 43111 0 14567888877 49999999999999887443
No 351
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=44.04 E-value=25 Score=28.86 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=39.7
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec---CCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ---VNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~---~~g~v~~~~~ 401 (426)
...++..+||+.++++...+-..|-+|...|.|.-.-|. ....|..+++
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~ 116 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRK 116 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHH
Confidence 357999999999999999999999999999999766554 4446666654
No 352
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.99 E-value=34 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
..-.+..+||+.+|+|+..|...+.++..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55678999999999999999998887654
No 353
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=43.83 E-value=51 Score=28.71 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+.+++.|+..-+..-..|=.+++-..||+.||+|..-|-.-|..|-.+|.|.-+ +..|+.+..
T Consensus 15 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 15 TKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 455666666666666678889999999999999999999999999999999654 556766554
No 354
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=43.41 E-value=1.5e+02 Score=24.90 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHH
Q 014350 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (426)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~ 187 (426)
.+....+|+.|+.. .|-|.++-+..|++-..+|+...|-++|......|.. + .+++|..+.
T Consensus 76 ~d~aR~vy~~a~~~------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-----~----~~~le~a~~ 136 (161)
T 4h7y_A 76 PDDARDYFQMARAN------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-----P----LEMLEIALR 136 (161)
T ss_dssp GGGCHHHHHHHHHH------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-----C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-----c----HHHHHHHHH
Confidence 45677888888773 4446788889999999999999999999999998753 2 556666554
No 355
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=43.39 E-value=19 Score=28.85 Aligned_cols=49 Identities=8% Similarity=0.136 Sum_probs=39.5
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC---CEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~---g~v~~~~~ 401 (426)
...++...||+.++++...+-..|.+|...|.|.-..|..+ ..+..+++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~ 103 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTED 103 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHH
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHh
Confidence 34789999999999999999999999999999976655433 35555543
No 356
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=42.80 E-value=65 Score=25.47 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=36.1
Q ss_pred cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCE
Q 014350 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRL 395 (426)
Q Consensus 357 ~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~ 395 (426)
+...||+.+|++...+-..|.+|...|.|.-.-|..++-
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 999999999999999999999999999999888777663
No 357
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=42.77 E-value=35 Score=30.45 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 333 YIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 333 ~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
..+.+++.|+..-+...+.|=.+++...||+.||+|..-|-.-|..|-..|.|.- -+..|+++.
T Consensus 27 ~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V~ 90 (237)
T 3c7j_A 27 ARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVVA 90 (237)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred cHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEEe
Confidence 3455777887766666778889999999999999999999999999999999864 345566543
No 358
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=42.57 E-value=20 Score=28.69 Aligned_cols=33 Identities=6% Similarity=0.149 Sum_probs=30.6
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCc-ee
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNR-ID 386 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~-i~ 386 (426)
.-.+++.||+.-|++...++..|.+++..|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6889999999999999999999999999995 54
No 359
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=42.19 E-value=32 Score=33.58 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 345 VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
.+++++.....+|-.+||+.+|+|...+-+.+.+|+..|.|..
T Consensus 43 ~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 43 RVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3455555678999999999999999999999999999999853
No 360
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=41.86 E-value=9.1 Score=36.98 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=37.6
Q ss_pred HHHHHHHHH---HHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 336 DLLKNVRTQ---VLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 336 ~L~~~l~~~---~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
.+-+.++.. .+++++. ...+|-.+||+.+|+|...|-..+.+|+.+|.|..
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp ----------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred cCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 344444444 3566677 88999999999999999999999999999999953
No 361
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.80 E-value=1.3e+02 Score=31.37 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-HhcCCC---
Q 014350 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD-FVSGSA--- 108 (426)
Q Consensus 33 ~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~-~~~~~~--- 108 (426)
.+.|+.|...++.+.+ .+..-..+.+.+.-+-..|+++++..+|...-.+- .+-..++.++. .+...+
T Consensus 423 ~G~i~~~~~li~l~d~-~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d-------~vl~lln~~Ls~~l~~~~~~~ 494 (661)
T 2qx5_A 423 PGVIEERQPLLHVRDE-KEFLHTITEQAARRADEDGRIYDSILLYQLAEEYD-------IVITLVNSLLSDTLSASDLDQ 494 (661)
T ss_dssp CCHHHHTCGGGTCSCH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHSCTTS
T ss_pred cchHHHhhcccccccH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHH-------HHHHHHHHHHHHHhccccccc
Confidence 3455555444443211 11234556777788889999999998887653331 12222222222 222111
Q ss_pred -CCC-----hhHHHHHHHHHHHHHHhh--------hhhhhHHHHhHHHHHHH--HHhccHHHHHHHHHHHHhh
Q 014350 109 -SQN-----FSLLREFYQTTLKALEEA--------KNERLWFKTNLKLCKIW--FDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 109 -~~~-----~~~~~~~~~~~l~~l~~~--------~~~kl~~r~~~~La~~~--~~~g~~~~A~~ll~el~~~ 165 (426)
..+ .+....+.....+..... ...+--+++.+++..++ +..|+|+.|.+.++++.-.
T Consensus 495 ~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ll 567 (661)
T 2qx5_A 495 PLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLL 567 (661)
T ss_dssp CSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCS
T ss_pred ccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 000 011222222222221111 01223457778888887 8899999999999998633
No 362
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=41.66 E-value=46 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=37.8
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
....++.+|++.+|++..-+-..|.+|...|.|.-+.+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 457899999999999999999999999999999988876654
No 363
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=41.42 E-value=48 Score=28.28 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHHHHhcccc-ccccchhHHhHhCCChHHHHHHHHHhHHcCc-eeE
Q 014350 341 VRTQVLLKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNR-IDG 387 (426)
Q Consensus 341 l~~~~l~~i~~pY-s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~-i~a 387 (426)
-|...|+.++..- ..++.+.||+.||+|...+.+.|..|-..|. |.+
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3455666666543 3499999999999999999999999999988 753
No 364
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=41.24 E-value=67 Score=25.21 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=46.3
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC-chhhHHHHH--hcCceeehhhhhhhcC
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR-SAYLTFLLL--KKNAYLTCSYLVSELG 426 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 426 (426)
-.+..++|+.+|++.+++..++..+...|.+...- .|.....+. ......|.+ ++++.+|.+.+-..+|
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~---~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg 91 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV---KDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLG 91 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE---TTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec---CCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHC
Confidence 34778999999999999999999999999886532 233222222 111222221 3468888888877665
No 365
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=40.68 E-value=53 Score=29.55 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=39.7
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
...+++.+||+.+|+|...+-+.|.+|...|.|... ..++.+..+.+
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~ 210 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNEL 210 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHH
Confidence 457999999999999999999999999999999765 44566666644
No 366
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=40.59 E-value=19 Score=28.58 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC---CEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN---RLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~---g~v~~~~~ 401 (426)
..++..+||+.++++...+-..|-+|...|.|.-.-|..+ ..|..+++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~ 102 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQ 102 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHH
Confidence 5799999999999999999999999999999976555544 45555554
No 367
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=40.18 E-value=21 Score=31.44 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=44.6
Q ss_pred cccchhHHhHhCCCh-HHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHHHHh--cCceeehhh
Q 014350 355 RIRIPFISKELNVPE-KDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFLLLK--KNAYLTCSY 420 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~-~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~~--~~~~~~~~~ 420 (426)
.++-.+||..+|++. +.+-+.+.+|-.+|.|.- ..|.|.+.++.... -+... -++|+.|..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~----~~~~i~I~d~~~L~-~~~~~~~~~~~~~~~~ 232 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY----KNSCFYVQNLDYLK-RYAPKLDEWFYLACPA 232 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHHHH-HHCHHHHHHHHHHCHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe----cCCEEEEeCHHHHH-HHhcCCHHHhhhcCch
Confidence 577889999999999 899999999999998743 35667776654432 23332 446777754
No 368
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=39.82 E-value=35 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcC
Q 014350 338 LKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDN 383 (426)
Q Consensus 338 ~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g 383 (426)
...-|.+.|+.++.....++.++||+.|++|++.+..-+..|=..+
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3455777888888888999999999999999998888777664443
No 369
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.07 E-value=38 Score=25.39 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=29.0
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHc
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~ 382 (426)
+.++.+. +.-.+...||+.+|+++..|...+.++...
T Consensus 33 ~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 33 RTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3444443 677899999999999999999998887643
No 370
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=39.02 E-value=33 Score=27.62 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=34.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
..++...||+.++++...+-..|-+|...|.|.-.-|..++ .|..+++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~ 103 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEE 103 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHH
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHH
Confidence 35899999999999999999999999999999876665555 3444443
No 371
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.81 E-value=85 Score=22.38 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=35.4
Q ss_pred HHHHhcccc--ccccchhHHhHh-----CCChHHHHHHHHHhHHcCceeE
Q 014350 345 VLLKLIKPY--TRIRIPFISKEL-----NVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 345 ~l~~i~~pY--s~I~l~~iA~~l-----~l~~~evE~~l~~lI~~g~i~a 387 (426)
.|+.++... ..++..+|++.+ +++...|-..|-.|...|.|.-
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 344444333 579999999999 9999999999999999999974
No 372
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=38.75 E-value=59 Score=28.91 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 336 DLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 336 ~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
.+.+.++..-...-..|=.++ +-..||+.+|+|..-|.+-+..|..+|.|.. -+..|+.+..
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~~ 71 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVRK 71 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEec
Confidence 444555444444456677889 8999999999999999999999999999964 4667776543
No 373
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=38.64 E-value=69 Score=24.67 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHhccccccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 345 VLLKLIKPYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 345 ~l~~i~~pYs~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
.+..+..--.++++.+|++.+ |++...+-..|..|-..|.|.-+.+ ....+..++.
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~ 88 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEK 88 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHH
T ss_pred HHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECcc
Confidence 334343322346699999999 9999999999999999999998888 5445555544
No 374
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=38.50 E-value=61 Score=26.70 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC
Q 014350 340 NVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (426)
Q Consensus 340 ~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~ 393 (426)
..|...+..+. -...+...||+.+|++...|-..|..|...|.|..+-|...
T Consensus 58 p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 58 PTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCE
Confidence 34444444443 35689999999999999999999999999999988755433
No 375
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=37.97 E-value=51 Score=27.20 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=38.2
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec---CCCEEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ---VNRLLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~---~~g~v~~~~~ 401 (426)
...++..+||+.++++...+-..|.+|...|.|.-.-|. ....|..+++
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 117 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEK 117 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGG
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHH
Confidence 346999999999999999999999999999999876644 4446666665
No 376
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=37.72 E-value=92 Score=23.89 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=31.9
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
..+++.++|+.+|++...+-+.|..|...|.+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999998654
No 377
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=37.40 E-value=50 Score=29.40 Aligned_cols=65 Identities=6% Similarity=0.007 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..+++.++..-...-..|=.++ +-..||+.+|+|...|.+-+..|..+|.|..+ +..|+.+...+
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~ 77 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPKL 77 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccCc
Confidence 4455555544444455677899 89999999999999999999999999998654 66777665443
No 378
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.04 E-value=45 Score=24.60 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=26.2
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHc
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~ 382 (426)
+.-.+...||+.+|+++..|...+.++...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567899999999999999999999887643
No 379
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=36.90 E-value=98 Score=26.87 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 334 IEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 334 ~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
.+.+++.|+..-+.--+.|=.+++-..||+.||+|..-|-.-|..|-.+|.|..+ +..|+.+..
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~~ 81 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEec
Confidence 3456677776666667788899999999999999999999999999999998654 556766544
No 380
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=36.83 E-value=24 Score=28.79 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=38.1
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC---CCEEEEecC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV---NRLLERGDR 401 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~---~g~v~~~~~ 401 (426)
....++..+||+.++++...+-..|.+|...|.|.-.-|.. ...+..+++
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~ 111 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDA 111 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHH
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChh
Confidence 44679999999999999999999999999999997655444 445555554
No 381
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=36.14 E-value=23 Score=28.40 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=31.6
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
++.+.||+.+|+++..|...|.+++..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 89999999999999999999999999999865444
No 382
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.05 E-value=1.1e+02 Score=25.58 Aligned_cols=65 Identities=6% Similarity=0.035 Sum_probs=50.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCC--ChhHHHHHH-HhhHHHhHHhhcHHHHHHHHHHHHhhh
Q 014350 188 EIQMYTETKNNKKLKQLYQKALAIKSAIP--HPRIMGIIR-ECGGKMHMAERQWADAATDFFEAFKNY 252 (426)
Q Consensus 188 e~rl~~~~~d~~kak~~l~~a~~i~~~~~--~p~~~~~i~-~~~g~~~~~~~~y~~A~~~f~ea~~~~ 252 (426)
+...++..|+|-.|.+.++..-+....-. ...+|+.|. ...|.+|...+|...|.+.|-.+....
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33445566999999999998855432211 235789999 999999999999999999999996644
No 383
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.80 E-value=50 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHc
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~ 382 (426)
+.-.+...||+.+|+++..|...+.++...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999998876543
No 384
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.76 E-value=33 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.1
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+.-.+.++||+.+|+|+..|...+.+++.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47899999999999999999999988764
No 385
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=35.51 E-value=49 Score=25.26 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.7
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
...|++.||+.+|+|.+.|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999988877654
No 386
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.48 E-value=53 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+.-.+...||+.+|+|+..|...+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45669999999999999999988887653
No 387
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=35.32 E-value=1.6e+02 Score=30.39 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 56 ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 56 ~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
.-+++++.+.+.|+++.|.+.|..+-.+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~ 710 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDL 710 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccCh
Confidence 4467888888888888888888876444
No 388
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=35.23 E-value=98 Score=25.06 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=40.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
..++...||+.++++...+-..|-+|...|.|.=..|..++ .|..+++
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~ 95 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQ 95 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGG
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHH
Confidence 34667899999999999999999999999999988888777 5555654
No 389
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=34.39 E-value=4.9e+02 Score=28.36 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=59.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhH
Q 014350 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNL 140 (426)
Q Consensus 61 ~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~ 140 (426)
.++|+..|+|++++.|=-.--+.+.-.-...+++.+|.++++.+-+. ..+-++..-+.-....-......+-.
T Consensus 77 Skvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~-------~~~~~~~~~~~~~~~~id~rL~~Lv~ 149 (963)
T 4ady_A 77 SKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQE-------ASKQYTKDEQFYTKDIIDPKLTSIFE 149 (963)
T ss_dssp HHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHH-------HHHHHHHCTTGGGSSCSCHHHHHHHH
T ss_pred HHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHH-------HhhccccccccccccccCHHHHHHHH
Confidence 49999999999999876554344423346788999999998876431 11111000000000000011223445
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 141 KLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 141 ~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
++.....+.|.+.+|..++-|++..
T Consensus 150 ~iv~~cl~hnae~~AvdLalE~erL 174 (963)
T 4ady_A 150 RMIEKCLKASELKLALGIALEGYRL 174 (963)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhH
Confidence 7777888899999999888887665
No 390
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=34.04 E-value=60 Score=27.27 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=34.3
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
.++-++||..+|++.+.+-+.+.+|..+|.|.- ..|.+.+.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 205 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV----KGKTMVVFG 205 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEEe
Confidence 578899999999999999999999999998842 235555544
No 391
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.93 E-value=44 Score=28.49 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=37.4
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.++-++||..+|++.+.+-+.+.+|-.+|.|.- ..|.+.+.++..
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~ 213 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDSKR 213 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCHHH
Confidence 678899999999999999999999999998842 356777765543
No 392
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=33.76 E-value=39 Score=24.71 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=31.6
Q ss_pred ccccccchhHHhHh-CCChHHHHHHHHHhHHcCcee
Q 014350 352 PYTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 352 pYs~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~ 386 (426)
+=+..-|.++++.| +..+-+|.+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 44678899999999 999999999999999999984
No 393
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.64 E-value=41 Score=29.17 Aligned_cols=49 Identities=8% Similarity=-0.088 Sum_probs=39.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
...++...||+.++++...+-..|-+|...|.|.-.-|..++ .|..+++
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~ 111 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEE 111 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHH
Confidence 357999999999999999999999999999999877766555 5555554
No 394
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=33.51 E-value=46 Score=28.12 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=37.3
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.++-++||..+|++.+.+-+.+.+|..+|.|.- ..|.+.+.++..
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~ 190 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRS----GYGKIQLLDLKG 190 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCHHH
Confidence 578899999999999999999999999998862 346777766544
No 395
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=33.41 E-value=82 Score=23.65 Aligned_cols=42 Identities=10% Similarity=-0.081 Sum_probs=35.7
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
++...||..+|+++..+...+-.|...|.|.-. .|-..++++
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~----~~~~~LT~k 62 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE----GKQYMLTKK 62 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TTEEEECHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE----CCeeEEChh
Confidence 999999999999999999999999999999765 333555554
No 396
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=33.41 E-value=75 Score=30.64 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
++++++|+..+++.+..+++ .-++..+++++.-.|+++++.+.|.+-..+
T Consensus 290 ~gd~d~A~~~l~rAl~Ln~s-----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLEMS-----WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
No 397
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=32.97 E-value=50 Score=28.32 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=36.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
-.++-++||..+|++.+.+-+.+.+|-.+|.|.- ..|.+.+.++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~ 221 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL----DGREISILDRE 221 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE----SSSCEEESCST
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe----cCCEEEEeCHH
Confidence 3678899999999999999999999999998843 34556666554
No 398
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=32.76 E-value=72 Score=25.72 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=40.8
Q ss_pred cccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 351 KPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 351 ~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
.+-..++...||+.++++...+-..|-+|...|.|.=.-|..++ .|..+++
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 100 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDK 100 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHH
Confidence 34567999999999999999999999999999999888887766 4555544
No 399
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.73 E-value=82 Score=22.05 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.0
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHc
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILD 382 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~ 382 (426)
+.-.+...||+.+|+++..|...+.++...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 678899999999999999999988876643
No 400
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=32.55 E-value=70 Score=29.17 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
..+.+.|+......-..|=.++ +-..||+.+|+|...|.+-|..|..+|.|.. -+..|+.+...
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~~ 96 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRER 96 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECCC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEecC
Confidence 4455555554445556777899 8999999999999999999999999999853 34556655443
No 401
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=32.11 E-value=39 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=24.4
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHH
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLV 377 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~ 377 (426)
..|..++.... +++.++|+.+|+|..-|-..|.
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 34455554433 8999999999999888877664
No 402
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=32.11 E-value=32 Score=27.85 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.9
Q ss_pred cccccchhHHhHhCCChHHHHHHHHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
|-+.+++.||+.+|+++++||..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999987754
No 403
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=32.06 E-value=56 Score=26.81 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=38.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC---EEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR---LLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g---~v~~~~~ 401 (426)
..++...||+.++++...+-..|-+|...|.|.-.-|..++ .|..+++
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~ 111 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDA 111 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHH
Confidence 47999999999999999999999999999999988887776 4444443
No 404
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=31.89 E-value=49 Score=28.08 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=38.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
-.++-++||..+|++.+.+-+.+.+|-.+|.|. + ..|.+.+.++..
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~--~~~~i~i~d~~~ 207 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR--L--GPGTVEVREAAL 207 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--E--ETTEEEESCHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--e--cCCEEEEeCHHH
Confidence 478899999999999999999999999999885 2 356677765543
No 405
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=31.69 E-value=18 Score=30.28 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=36.0
Q ss_pred HhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 348 KLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 348 ~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
..+.|-.+++...||+.+|+|...+-.-+.+|...|.|..
T Consensus 20 ~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 20 NELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3567888999999999999999999999999999999974
No 406
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=31.63 E-value=67 Score=28.11 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=35.9
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.++-++||..+|++.+.+-+.+.+|..+|.|.- ..|.|.+.++..
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~----~~~~i~I~d~~~ 237 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI----HKKKITVHKPVT 237 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEECC---
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE----cCCEEEECCHHH
Confidence 678899999999999999999999999998863 356677766543
No 407
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=31.47 E-value=47 Score=27.87 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=37.3
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchh
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAY 404 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~ 404 (426)
.++-++||+.+|++.+.+-+.+.+|..+|.|.- ..|.+.+.++...
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L 184 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT----AYRRVYLLDLAAL 184 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE----ETTEEEECCHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCHHHH
Confidence 478889999999999999999999999998742 3566777665443
No 408
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=31.22 E-value=75 Score=27.32 Aligned_cols=46 Identities=7% Similarity=0.005 Sum_probs=37.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
-.++-++||..+|++.+.+-+.+.+|..+|.|.- ..|.+.+.++..
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~~ 224 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDCDR 224 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCHHH
Confidence 3678899999999999999999999999998742 346677766544
No 409
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.01 E-value=1.6e+02 Score=25.42 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhcCCc--c---c---------hhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 014350 29 ETDPEGALAGFAEVVAMEP--E---K---------AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~--~---~---------~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~ 84 (426)
..|+..|+..+.++++.+- + | .+-..=-..-++.+|.+.|+-+++..+|...-+.-
T Consensus 75 lKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~ 144 (242)
T 3kae_A 75 KKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS 144 (242)
T ss_dssp TTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence 4579999999999995321 1 1 11123345668999999999999999998876653
No 410
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=30.94 E-value=17 Score=29.00 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 341 l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
.+...|.+++.|=.+=.|.+|+=.=-=-...||..|..|...|.|.++||-
T Consensus 38 ~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIte 88 (118)
T 2cru_A 38 MRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCH
T ss_pred HHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 345556777777655555555421000135899999999999999998873
No 411
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=30.68 E-value=25 Score=28.34 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=27.2
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
..++..+||+.++++...+-..|-+|...|.|.-.-|..++
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~Dr 96 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNA 96 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 67999999999999999999999999999999876665555
No 412
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=30.51 E-value=79 Score=21.69 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHhcccc-ccccchhHHhHhCCChHHHHHHHHHhHHcCceeE
Q 014350 347 LKLIKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDG 387 (426)
Q Consensus 347 ~~i~~pY-s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a 387 (426)
+..+.+. .-++-.++|..||+|.+....-|-++.++|.+.-
T Consensus 9 Lall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 9 LALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 3334343 4688899999999999999999999999999864
No 413
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=30.31 E-value=63 Score=28.25 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 346 LLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 346 l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
|..+.+.-..++..+||+.++++...+-..|.+|...|.|.-.- ++.|..+++
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~ 63 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDL 63 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHH
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHH
Confidence 34455556789999999999999999999999999999986543 367777765
No 414
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=30.29 E-value=1.4e+02 Score=28.16 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 014350 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (426)
Q Consensus 32 ~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~~~~~~~k~~~~k~v~ 98 (426)
++++++.+.++++.+|+. .|..+.+.-+....-..|..+++.+++.+|.+.= | .-+++...+.+
T Consensus 254 l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p-~r~~~y~d~~~ 317 (331)
T 3dss_A 254 LQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-P-MRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-G-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-c-chhhHHHHHHH
Confidence 689999999999998864 7876555544444335678888888888888773 3 24555444443
No 415
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=30.17 E-value=86 Score=27.75 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
+.+++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..|-.+|.|.- -+..|+.+..
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~~ 93 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH--ELNRGVFVRV 93 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEEeC
Confidence 45666666655566667888999999999999999999999999999999864 3556766544
No 416
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=30.12 E-value=81 Score=27.65 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEE
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLER 398 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~ 398 (426)
+.+++.|+..-+..-..|=.++ +-..||+.||+|..-|-.-|..|..+|.|.- -+..|+.+.
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 4455566555555556788899 8999999999999999999999999999864 355676654
No 417
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=30.05 E-value=72 Score=26.52 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
..|+.+.+ .-..+..+||+.+|+|-..+...|-.+=.+|.+.
T Consensus 14 ~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 14 RDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 35677777 8899999999999999999999999999999884
No 418
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.73 E-value=68 Score=27.80 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=36.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
-.++-++||..+|++.+.+-+.+.++..+|.|.- + .|.+.+.++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~--~--~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL--H--RKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE--E--TTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe--c--CCEEEEeCh
Confidence 3678999999999999999999999999998852 2 456666554
No 419
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.57 E-value=62 Score=23.81 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=25.5
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
.+.-.+...||+.+|+++..|...+.++..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 366789999999999999999988887653
No 420
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=29.34 E-value=2.2e+02 Score=22.74 Aligned_cols=66 Identities=11% Similarity=-0.033 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHhccH---HHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 014350 137 KTNLKLCKIWFDMGEY---GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (426)
Q Consensus 137 r~~~~La~~~~~~g~~---~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~~i~ 212 (426)
.+..++|--+....+- .++..+|+++..... + ...-+.+..-+--+.+.|||.+|+.+.+....+.
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~------p----~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS------K----EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC------H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC------c----chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4456666666666554 448888988877621 1 1234455555557889999999999998886653
No 421
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.97 E-value=72 Score=23.68 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=25.0
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
.-.+...||+.+|+++..|+..+.++..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6678999999999999999999988754
No 422
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=28.87 E-value=1.1e+02 Score=24.37 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhccccccccchh-HHhHhCCChHHHHHHHHHhHHcCce
Q 014350 326 DDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPF-ISKELNVPEKDVEQLLVSLILDNRI 385 (426)
Q Consensus 326 ~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~-iA~~l~l~~~evE~~l~~lI~~g~i 385 (426)
.|.-+..+...|-++|.. -+..++++|+++|+++ +.-++|++--+....+-.+...|.+
T Consensus 18 ~d~el~~rar~LA~kIv~-pv~el~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLL 77 (121)
T 3kp1_E 18 SDEELQTRFWEMAEKIVD-PLLDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLM 77 (121)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHHHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCG
T ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcccc
Confidence 566677777777777743 4567889999999986 7888999877777766666666665
No 423
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.69 E-value=1.7e+02 Score=24.33 Aligned_cols=130 Identities=13% Similarity=0.143 Sum_probs=67.3
Q ss_pred hHHHHhhccc-CCCCHHHHHHHHHHHhcCCc-cchhh-------------hHHHHHHHHHHH--HHhCCHHHHHHHHHHH
Q 014350 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEP-EKAEW-------------GFKALKQTVKLY--YRLGKYKEMMDAYREM 80 (426)
Q Consensus 18 ~~~~~~ak~~-~~~~~~~Ai~~~~~ii~~~~-~~~~~-------------~~k~l~~l~~l~--~~~~~~~~l~e~~~~l 80 (426)
+...-+||.+ -++..++.++...+.++..+ +...| .+..|..|++++ ...|+.....+.|..+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh
Confidence 4455666654 46678999999999987654 33344 333344443332 2333333333333322
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHhccHHHHHHHHH
Q 014350 81 LTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILK 160 (426)
Q Consensus 81 ~~~~~~~~~k~~~~k~v~~il~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~kl~~r~~~~La~~~~~~g~~~~A~~ll~ 160 (426)
-+. .+-|.-.++.+-. .+ ..+++.+++.-. ..+..+--.+.+++|.-|...|+..+|.+++.
T Consensus 88 n~~----------se~vd~ALd~lv~-~~-KkDqLdki~~~~------l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 88 NTL----------NEHVNKALDILVI-QG-KRDKLEEIGREI------LKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp TCC----------CHHHHHHHHHHHH-TT-CHHHHHHHHHHH------C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cch----------HHHHHHHHHHHHH-hc-cHhHHHHHHHHH------hccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 111 1122223333322 11 122333322211 11233333556799999999999999999888
Q ss_pred HHHhh
Q 014350 161 ELHKS 165 (426)
Q Consensus 161 el~~~ 165 (426)
+.=+.
T Consensus 150 ~AC~k 154 (172)
T 1wy6_A 150 EACKK 154 (172)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77544
No 424
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.36 E-value=33 Score=21.28 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=22.8
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
.-.+...||+.+|++...|..++.+.-
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 457899999999999999998886543
No 425
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=28.16 E-value=1e+02 Score=28.62 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=37.0
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCC
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVN 393 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~ 393 (426)
+...++.++||+.||+|...|-+.|..+-..|.+.-++..+.
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~~ 59 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDY 59 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCCc
Confidence 346799999999999999999999999999999987775543
No 426
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=27.93 E-value=2.6e+02 Score=24.47 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHhHHcCceeEEEec-CCCEEEEecC--c--hhhHHHHH--hcCceeehhhhhhhcC
Q 014350 367 VPEKDVEQLLVSLILDNRIDGHIDQ-VNRLLERGDR--S--AYLTFLLL--KKNAYLTCSYLVSELG 426 (426)
Q Consensus 367 l~~~evE~~l~~lI~~g~i~akID~-~~g~v~~~~~--~--~~~~~~~~--~~~~~~~~~~~~~~~~ 426 (426)
+|++++.+-+-.+=.-|. .-++-+ .+|...+... . ..++.|++ ..++|+|.+.+...+|
T Consensus 114 VSp~Dl~~A~~~l~~Lg~-~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~~l~ 179 (218)
T 3cuq_B 114 LSPEDLVNACKMLEALKL-PLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVG 179 (218)
T ss_dssp CCHHHHHHHHHTTTTTTC-SEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCC-CEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHHHhC
Confidence 799999988887765553 344444 4466444432 2 23455543 5689999999988776
No 427
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.83 E-value=47 Score=23.29 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=24.5
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
.-.+...||+.+|+|+..|...+.+.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999988877653
No 428
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=27.64 E-value=1.4e+02 Score=30.35 Aligned_cols=81 Identities=12% Similarity=0.189 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccch-hHHhHhCCChHHHHH
Q 014350 296 LAMTNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIP-FISKELNVPEKDVEQ 374 (426)
Q Consensus 296 ~~l~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~-~iA~~l~l~~~evE~ 374 (426)
+.+++-.+.|+. .|+++...+..---.||-+..-+..-......-++..+.+-|..+.+. .-.+-+.-+++++|.
T Consensus 486 ~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~ 561 (571)
T 2pft_A 486 QMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGD 561 (571)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHH
Confidence 356666667666 577666655443346887765444333333344556666666666663 345667899999999
Q ss_pred HHHHhH
Q 014350 375 LLVSLI 380 (426)
Q Consensus 375 ~l~~lI 380 (426)
.|.++-
T Consensus 562 ~L~~LF 567 (571)
T 2pft_A 562 MIDRLF 567 (571)
T ss_dssp HHHTSS
T ss_pred HHHHHh
Confidence 998763
No 429
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=26.81 E-value=2.6e+02 Score=24.66 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHc----CceeEEEecCCCEEEEecCchhhHHHH
Q 014350 341 VRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILD----NRIDGHIDQVNRLLERGDRSAYLTFLL 409 (426)
Q Consensus 341 l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~----g~i~akID~~~g~v~~~~~~~~~~~~~ 409 (426)
++|-.|..--+| |+++.||+.++++.++++..|..|..+ ++ .-.|=+++|...+..++++...|.
T Consensus 19 ~iEAlLf~a~ep---vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~r-Giel~~v~~gy~l~T~~e~~~~v~ 87 (219)
T 2z99_A 19 VLEALLLVIDTP---VTADALAAATEQPVYRVAAKLQLMADELTGRDS-GIDLRHTSEGWRMYTRARFAPYVE 87 (219)
T ss_dssp HHHHHHHHCSSC---BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC-SEEEEEETTEEEEEECGGGHHHHH
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCC-CEEEEEECCEEEEEEcHHHHHHHH
Confidence 334334433355 999999999999999999999888753 21 236777788888888888765553
No 430
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.75 E-value=90 Score=26.12 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=42.3
Q ss_pred cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC---chhhHHHHHhcCceeehh
Q 014350 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR---SAYLTFLLLKKNAYLTCS 419 (426)
Q Consensus 357 ~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~---~~~~~~~~~~~~~~~~~~ 419 (426)
-|.+||+.|+-+++.+-+++..=.- -.|.||..+|.+++..+ ...+..|..==..||.|+
T Consensus 45 Nf~dIak~L~R~p~hv~ky~~~ELG---t~g~id~~~~rlii~G~~~~~~i~~~L~~yI~~YVlC~ 107 (157)
T 2e9h_A 45 NMVDVAKALNRPPTYPTKYFGCELG---AQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCP 107 (157)
T ss_dssp THHHHHHHTTSCTHHHHHHHHHHHT---CCEEEETTTTEEEEEBCCCHHHHHHHHHHHHHHTTSCT
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHhC---CceeecCCCCEEEEEeeeCHHHHHHHHHHHHHHeEECC
Confidence 5889999999999988877764222 26899988888888765 233444544455677775
No 431
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=26.72 E-value=74 Score=27.87 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=41.1
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHHHHhcCcee
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFLLLKKNAYL 416 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~~~~~~~ 416 (426)
.++-.+||..+|++.+.+-+.+.+|..+|.|.- ..|.+.+.++.. +.-+...-..|.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~-L~~~a~~~~~~~ 233 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGE-LKHLSEQTSYYS 233 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHH-HHHHHTSSCCCC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHH-HHHHHccCcccc
Confidence 678999999999999999999999999998742 346666664433 333334333443
No 432
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=26.68 E-value=3.9e+02 Score=24.87 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=14.9
Q ss_pred HhccHHHHHHHHHHHHhh
Q 014350 148 DMGEYGRMSKILKELHKS 165 (426)
Q Consensus 148 ~~g~~~~A~~ll~el~~~ 165 (426)
..|.++++.+.+.++.+.
T Consensus 287 ~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 287 PLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh
Confidence 357788899999999887
No 433
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=26.60 E-value=2.9e+02 Score=23.37 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=35.8
Q ss_pred cCCCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 014350 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (426)
Q Consensus 27 ~~~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l~~~ 83 (426)
+..+|++.|.+..+++ + +...| +++++....+|+.+-+-+.|+.+-.+
T Consensus 16 L~lg~l~~A~e~a~~l---~-~~~~W-----k~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL---N-DSITW-----ERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHTTCHHHHHHHHHHH---C-CHHHH-----HHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HhcCCHHHHHHHHHHh---C-CHHHH-----HHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 4567888898887766 1 12344 78899999999999999998877444
No 434
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.43 E-value=53 Score=24.02 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
.-.|...||+.+|+|+..|...+.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999888764
No 435
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=26.31 E-value=1.4e+02 Score=22.76 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHH
Q 014350 299 TNLIAAYQRNEIIEFEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQ 344 (426)
Q Consensus 299 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~ 344 (426)
.++.+.|. +|-........+.+..+..|+.|...++.|..++...
T Consensus 54 ~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 54 PKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 46677787 8877777778888888889999999999988887643
No 436
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=26.10 E-value=4.1e+02 Score=25.17 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=39.1
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHHHHhcCc
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFLLLKKNA 414 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~~~~~ 414 (426)
++.+.+++.+|+|...+.+.|.+|...|.|.- +....+. .....++...+.+-.+.
T Consensus 312 ~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~-~~~gR~~--~y~~~~~~~~l~~~~~~ 367 (373)
T 2qc0_A 312 CRIQNLVESGLAKRQTASVYLKQLCDIGVLEE-VQSGKEK--LFVHPKFVTLMTKDSNQ 367 (373)
T ss_dssp EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE-C--CCSC--EEECHHHHHHHHSSCCC
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE-ecCCCce--EEehHHHHHHHccCCcc
Confidence 56778999999999999999999999999963 3344443 33345555555443443
No 437
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=26.02 E-value=85 Score=27.65 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhccccccc-cchhHHhHhCCChHHHHHHHHHhHHcCceeE--EEecCCCEEEEecC
Q 014350 335 EDLLKNVRTQVLLKLIKPYTRI-RIPFISKELNVPEKDVEQLLVSLILDNRIDG--HIDQVNRLLERGDR 401 (426)
Q Consensus 335 ~~L~~~l~~~~l~~i~~pYs~I-~l~~iA~~l~l~~~evE~~l~~lI~~g~i~a--kID~~~g~v~~~~~ 401 (426)
+.+++.|+..-+..-..|=.++ +-..||+.||+|..-|-.-|..|-.+|.|.- +-.+..|+.+....
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~ 76 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAP 76 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCc
Confidence 4566666666666666788899 5779999999999999999999999999875 33322677665443
No 438
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=25.94 E-value=54 Score=28.24 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=36.2
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCc
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRS 402 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~ 402 (426)
.++-++||..+|++.+.+-+.+.+|-.+|.|.- ..|.+.+.++.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~ 218 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV----SPRSVTLLDLA 218 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSCEEESCHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe----cCCEEEEeCHH
Confidence 678999999999999999999999999998852 34566665543
No 439
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=25.84 E-value=2.7e+02 Score=23.91 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=35.5
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEec
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~ 391 (426)
....+...||+.+|++...+-..|..|...|.|...-+.
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 356899999999999999999999999999999887763
No 440
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=25.75 E-value=1.6e+02 Score=24.68 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=43.4
Q ss_pred cccchhHHhHhC--CChHHHHHHHHHhHHcCc--e-eEEEecCCCEEEEecCchhhHHHHH
Q 014350 355 RIRIPFISKELN--VPEKDVEQLLVSLILDNR--I-DGHIDQVNRLLERGDRSAYLTFLLL 410 (426)
Q Consensus 355 ~I~l~~iA~~l~--l~~~evE~~l~~lI~~g~--i-~akID~~~g~v~~~~~~~~~~~~~~ 410 (426)
-|+++.||+.++ ++.++++..|..+..+=. = .-.|=+++|...+..++++...|..
T Consensus 22 pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~ 82 (162)
T 1t6s_A 22 PVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQ 82 (162)
T ss_dssp CBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHH
T ss_pred CCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHH
Confidence 499999999999 999999999988875311 1 2367777888888888888766644
No 441
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=25.70 E-value=1.3e+02 Score=24.60 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=44.0
Q ss_pred cccc-ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 350 IKPY-TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 350 ~~pY-s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
+..| +-||..-++++|+++..-+...|-.|-..|.|.-..-+....|.....
T Consensus 57 Vpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~ 109 (143)
T 2xzm_8 57 PSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIG 109 (143)
T ss_dssp CTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETT
T ss_pred hcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCC
Confidence 3458 999999999999999999999999999999998877666666665543
No 442
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=25.65 E-value=77 Score=33.66 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 014350 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREM 80 (426)
Q Consensus 29 ~~~~~~Ai~~~~~ii~~~~~~~~~~~k~l~~l~~l~~~~~~~~~l~e~~~~l 80 (426)
+++++-|++.-++.++..|++ |++=..|+++|...|+|+.|+=.+..+
T Consensus 350 K~~~elAL~~Ak~AV~~aPse----F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDS----FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSC----HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhcCchh----hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 567999999999999887754 777789999999999999999776665
No 443
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=25.63 E-value=75 Score=26.35 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=40.8
Q ss_pred ccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC---chhhHHHHHhcCceeehh
Q 014350 356 IRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR---SAYLTFLLLKKNAYLTCS 419 (426)
Q Consensus 356 I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~---~~~~~~~~~~~~~~~~~~ 419 (426)
+-|.+||+.|+=+++.+-+++..=. --.|.|| +|.++++.+ ...+..|..==..||+|+
T Consensus 47 ~Nf~dIa~~L~R~p~hv~ky~~~EL---Gt~g~id--~~rlii~G~~~~~~i~~~L~~yI~~yVlC~ 108 (148)
T 2d74_B 47 ENFKDIADALNRDPQHLLKFLLREI---ATAGTLE--GRRVVLQGRFTPYLIANKLKKYIKEYVICP 108 (148)
T ss_dssp SCHHHHHHHHTCCSHHHHHHHHHHS---CCCEEEE--TTEEEESSCCCHHHHHHHHHHHHHHHSSCS
T ss_pred EcHHHHHHHHCCCHHHHHHHHHHHh---CCceeec--CCEEEEEeeeCHHHHHHHHHHHHHHEEECC
Confidence 3689999999999998887766421 2368899 788888765 333444444445677775
No 444
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.62 E-value=57 Score=22.21 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=24.6
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+.-.+...||+.+|+|+..|...+.++..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999888877653
No 445
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=25.56 E-value=1.6e+02 Score=23.52 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=37.6
Q ss_pred cccccchhHHhHh-CCChHHHHHHHHHhHHcCceeEEEecCCC
Q 014350 353 YTRIRIPFISKEL-NVPEKDVEQLLVSLILDNRIDGHIDQVNR 394 (426)
Q Consensus 353 Ys~I~l~~iA~~l-~l~~~evE~~l~~lI~~g~i~akID~~~g 394 (426)
....++.+|++.+ |++...+-..|.+|..+|.|.=+.+..++
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 5678999999999 99999999999999999999877776554
No 446
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=25.56 E-value=53 Score=27.69 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=30.0
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.++-++||..+|++.+.+-+.+.+|-.+|.|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 67889999999999999999999999999885
No 447
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=25.51 E-value=55 Score=28.11 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=36.9
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCch
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSA 403 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~ 403 (426)
.++-++||..+|++.+.+-+.+.+|..+|.|.- ..|.+.+.++..
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~~~ 221 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDSER 221 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCHHH
Confidence 578899999999999999999999999998743 346677665433
No 448
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.44 E-value=80 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=30.7
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEE
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGH 388 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ak 388 (426)
..|+.+||+.+|++...+-..|..|-..|.|.-.
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4899999999999988999999999999998543
No 449
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=24.58 E-value=80 Score=29.54 Aligned_cols=43 Identities=9% Similarity=-0.058 Sum_probs=36.3
Q ss_pred HHHHHhccccccccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 344 QVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 344 ~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
..|+.++..-..++.++||+.||+|...+.+.|..|-..|.+-
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 3455666666789999999999999999999999999888764
No 450
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=24.56 E-value=59 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=36.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecC-CCEEEEecCc
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQV-NRLLERGDRS 402 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~-~g~v~~~~~~ 402 (426)
-.++-.+||+.+|++.+.+-+.+.++..+|.|. .. .|.+.+.++.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d~~ 211 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKDLQ 211 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESCHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcCHH
Confidence 367889999999999999999999999998763 33 4566665543
No 451
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=24.40 E-value=56 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.7
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCcee
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~ 386 (426)
.++-.+||..+|++.+.+-+.+.+|..+|.|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999999874
No 452
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=24.28 E-value=16 Score=32.73 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=72.1
Q ss_pred HHHHHhhCCHHHHHHHHHHhH--HHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHH
Q 014350 301 LIAAYQRNEIIEFEKILKSNR--KTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVS 378 (426)
Q Consensus 301 L~~af~~~dl~~f~~~l~~~~--~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~ 378 (426)
|+-....+++.+|...++... ..+..||+++ |.=.+.+.+++.|+.++.+-+.+..-...+-....=.+.+...+.+
T Consensus 104 LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~-~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~ 182 (229)
T 4b0z_A 104 LLYLLSENRIAEFHTALESVPDKSLFERDPYVE-WVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIAT 182 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHhcChHHHhhcCHHHH-HHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Confidence 455567889999988887643 3357888875 6667999999999999988777665444344444445566666677
Q ss_pred hHHcCceeEEEecCCCEEEEecCchhhHHHHHh
Q 014350 379 LILDNRIDGHIDQVNRLLERGDRSAYLTFLLLK 411 (426)
Q Consensus 379 lI~~g~i~akID~~~g~v~~~~~~~~~~~~~~~ 411 (426)
+|...--.-.++.....+.|..+.++..|+.+.
T Consensus 183 ~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~ 215 (229)
T 4b0z_A 183 CAEKVYSEIPLSNATSLLYLENTKETEKLAEER 215 (229)
T ss_dssp HHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc
Confidence 766543333445555555555555666666553
No 453
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=24.28 E-value=93 Score=22.51 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=25.1
Q ss_pred ccccccccchhHHhHhC-----------CChHHHHHHHHHhHHcCcee
Q 014350 350 IKPYTRIRIPFISKELN-----------VPEKDVEQLLVSLILDNRID 386 (426)
Q Consensus 350 ~~pYs~I~l~~iA~~l~-----------l~~~evE~~l~~lI~~g~i~ 386 (426)
+..+.++.+++|...|. ++.++++..|.+++.+|++.
T Consensus 17 LtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 17 LTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp HHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 33445666666654432 23478899999999999886
No 454
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.21 E-value=3.3e+02 Score=27.43 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=52.2
Q ss_pred HHhHHHHHHHHHhccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 014350 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (426)
Q Consensus 137 r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~~~d~~kak~~l~~a~ 209 (426)
.+..-|.+.|+..+.|+.|.+++.+.. ..... .. ..+.+.+.....|++...++|.+|...+..|-
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~s----n~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VS----SSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CC----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455678889999999999999999875 21111 11 36678888899999999999999999999874
No 455
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=24.19 E-value=58 Score=27.94 Aligned_cols=42 Identities=10% Similarity=0.099 Sum_probs=34.1
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEec
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGD 400 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~ 400 (426)
.++-++||..+|++.+.+-+.+.+|-.+|.|.- ..|.+.+.+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHA----RGKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE----CCCEEEEee
Confidence 478899999999999999999999999998852 235555443
No 456
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=23.49 E-value=1.2e+02 Score=24.53 Aligned_cols=45 Identities=18% Similarity=0.036 Sum_probs=36.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecC
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDR 401 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~ 401 (426)
..++...+|+.+|++...+-..|.+|...|.|.-+- ++.+.+++.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~---~~~~~lT~~ 97 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP---WRGVFLTAE 97 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET---TTEEEECHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec---CCceEEChh
Confidence 568899999999999999999999999999876432 344555544
No 457
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=23.34 E-value=81 Score=27.20 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=36.5
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhh
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYL 405 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~ 405 (426)
.++-++||..+|++.+.+-+.+.+|-.+| | .. ..|.+.+.++....
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~--~~~~i~I~d~~~L~ 223 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TV--KRNHAEIEDIALLR 223 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--EC--CTTEEEESCHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Ee--eCCEEEEcCHHHHH
Confidence 35568999999999999999999999999 6 33 45777777665443
No 458
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=23.31 E-value=2.3e+02 Score=20.93 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=32.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
...+..+||+.+|++...+-+.|..|-.. .+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 56899999999999999999999999998 8876654
No 459
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=23.25 E-value=1.9e+02 Score=25.49 Aligned_cols=44 Identities=11% Similarity=-0.037 Sum_probs=36.4
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
..|+...+|+.+|++..-+...|-.++.+|.+.-- |++.| +.+.
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg-~~y~ 210 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEG-LRFY 210 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSC-EEEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCc-eEEe
Confidence 47999999999999999999999999999987533 46677 4443
No 460
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=22.98 E-value=34 Score=25.24 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHHcCceeEEEec
Q 014350 370 KDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~akID~ 391 (426)
+.||..|.+|...|.|.++||-
T Consensus 37 ~~VE~~Li~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLIQLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999998874
No 461
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=22.92 E-value=3.5e+02 Score=25.72 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=36.8
Q ss_pred cccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEecCchhhHHHH
Q 014350 355 RIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERGDRSAYLTFLL 409 (426)
Q Consensus 355 ~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~~~~~~~~~~~ 409 (426)
.++.+.+++.+|++...+.+.|.+|+..|.|.- +....+.+.+ -+.+...+.
T Consensus 311 ~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~-~~~gR~~~y~--~~~~l~il~ 362 (373)
T 3eqx_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE-VQSGKEKLFV--HPKFVTLMT 362 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE-C--CCSCEEE--CHHHHHHHH
T ss_pred CccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEE-eCCCCceEee--hHHHHHHHh
Confidence 478899999999999999999999999999962 3334444433 234444433
No 462
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.65 E-value=1.2e+02 Score=22.86 Aligned_cols=59 Identities=5% Similarity=-0.068 Sum_probs=43.1
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHHhhHHHhHHhhcHHHHHHHHHHHHhh
Q 014350 191 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (426)
Q Consensus 191 l~~~~~d~~kak~~l~~a~~i~~~~~~p~~~~~i~~~~g~~~~~~~~y~~A~~~f~ea~~~ 251 (426)
.++..|+|-.|-+.++..-+..+.-....+++.|...-|.+|...+|. |.+.|..+...
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 345569999999999988544322111357899999999999988888 77777777543
No 463
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.45 E-value=3.3e+02 Score=25.22 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHh-----ccHHHHHHHHHHHHhhcccCCCCcchhhhhhHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhh
Q 014350 138 TNLKLCKIWFDM-----GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALAI 211 (426)
Q Consensus 138 ~~~~La~~~~~~-----g~~~~A~~ll~el~~~~~~~~~~~d~~~~~~l~e~~l~e~rl~~~-~~d~~kak~~l~~a~~i 211 (426)
...-||.+|... |+.++|..++++......+ + .++....-.+.+.. .+|+..++.+++++...
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~--~---------~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA--H---------DPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT--T---------CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC--C---------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 445667777774 7888888888888777531 1 12233333445544 47788888888877665
Q ss_pred hcc
Q 014350 212 KSA 214 (426)
Q Consensus 212 ~~~ 214 (426)
...
T Consensus 270 ~p~ 272 (301)
T 3u64_A 270 DPE 272 (301)
T ss_dssp CGG
T ss_pred CCC
Confidence 443
No 464
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.09 E-value=1e+02 Score=24.58 Aligned_cols=29 Identities=10% Similarity=0.023 Sum_probs=25.6
Q ss_pred ccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 352 PYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 352 pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
.+.-.+...||+.+|+|+..|...+.++.
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788999999999999999998887765
No 465
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=21.20 E-value=2.3e+02 Score=20.28 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=28.9
Q ss_pred hHHHHhHHHHHHHHHhccHHHHHHHHHHHHhhcccC
Q 014350 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (426)
Q Consensus 134 l~~r~~~~La~~~~~~g~~~~A~~ll~el~~~~~~~ 169 (426)
.||--...+|.-+...|++++|...+......|..+
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 455556899999999999999999777777777643
No 466
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.14 E-value=1.1e+02 Score=23.25 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=24.4
Q ss_pred cccccchhHHhHhCCChHHHHHHHHHhHH
Q 014350 353 YTRIRIPFISKELNVPEKDVEQLLVSLIL 381 (426)
Q Consensus 353 Ys~I~l~~iA~~l~l~~~evE~~l~~lI~ 381 (426)
+.-.+..+||+.+|+++..|...+.++..
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35678899999999999999998887654
No 467
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=21.06 E-value=1.8e+02 Score=29.52 Aligned_cols=67 Identities=12% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHhccccccccchhHHhHhCCChHHHHHHHHHhH
Q 014350 313 FEKILKSNRKTIMDDPFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLI 380 (426)
Q Consensus 313 f~~~l~~~~~~l~~D~~l~~~~~~L~~~l~~~~l~~i~~pYs~I~l~~iA~~l~l~~~evE~~l~~lI 380 (426)
|+++...+..---.||-+...+..-......-+++.+.+-|.. .-..-.+-+..+++++|..|.++.
T Consensus 497 Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~-~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 497 FEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD-SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcccCCHHHHHHHHHHhc
Confidence 4444444332233688876544444444444455666666666 234456668889999999999875
No 468
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=20.97 E-value=38 Score=25.10 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHcCceeEEEec
Q 014350 370 KDVEQLLVSLILDNRIDGHIDQ 391 (426)
Q Consensus 370 ~evE~~l~~lI~~g~i~akID~ 391 (426)
+.||..|.+|...|+|.++||-
T Consensus 35 ~~VE~~Li~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLKKLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHHHHHHTCCSCCBCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5899999999999999998874
No 469
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.20 E-value=1.4e+02 Score=22.27 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=33.1
Q ss_pred ccccchhHHhHhCCChHHHHHHHHHhHHcCceeEEEe
Q 014350 354 TRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHID 390 (426)
Q Consensus 354 s~I~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID 390 (426)
.-|+..+||+.++++...+-..|-+|...|.|.-.-+
T Consensus 35 ~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp TCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 4799999999999999999999999999999984333
No 470
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=20.15 E-value=1.8e+02 Score=19.41 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred cchhHHhHhCCChHHHHHHHHHhHHcCceeEEEecCCCEEEEe
Q 014350 357 RIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLERG 399 (426)
Q Consensus 357 ~l~~iA~~l~l~~~evE~~l~~lI~~g~i~akID~~~g~v~~~ 399 (426)
-|.+||+.++=+++.+-+++..=.- -.|.|| +|.+++.
T Consensus 13 Nf~~Ia~~L~R~p~hv~ky~~~ELG---t~g~id--~~rlii~ 50 (52)
T 1k8b_A 13 NFRELAKAVNRDEEFFAKYLLKETG---SAGNLE--GGRLILQ 50 (52)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHS---SEEEEE--TTEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhC---CCeeec--CCEEEEe
Confidence 5789999999999988877664221 268888 6666654
No 471
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.05 E-value=4e+02 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=16.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh
Q 014350 140 LKLCKIWFDMGEYGRMSKILKELHKS 165 (426)
Q Consensus 140 ~~La~~~~~~g~~~~A~~ll~el~~~ 165 (426)
.+||+.-+..|+++-|...++.++..
T Consensus 38 k~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 38 ERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 46677777777777776666665443
Done!