Query 014351
Match_columns 426
No_of_seqs 233 out of 346
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 3E-129 6E-134 965.3 28.8 354 1-426 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 7.1E-85 1.5E-89 630.1 17.7 246 118-420 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.7 5E-19 1.1E-23 183.2 4.4 78 323-421 485-562 (565)
4 PF12937 F-box-like: F-box-lik 97.6 2.4E-05 5.3E-10 57.0 1.1 36 54-97 1-36 (47)
5 PF00646 F-box: F-box domain; 97.5 1.9E-05 4.2E-10 57.2 -0.7 39 53-99 2-40 (48)
6 PLN03215 ascorbic acid mannose 96.6 0.0012 2.7E-08 68.5 2.9 40 52-98 2-41 (373)
7 smart00256 FBOX A Receptor for 96.6 0.0005 1.1E-08 47.5 -0.3 33 57-97 1-33 (41)
8 PF12043 DUF3527: Domain of un 96.5 0.0036 7.7E-08 64.5 4.9 58 347-421 287-344 (346)
9 KOG2997 F-box protein FBX9 [Ge 94.9 0.034 7.4E-07 57.0 4.7 96 51-157 101-236 (366)
10 KOG2120 SCF ubiquitin ligase, 45.7 6 0.00013 41.2 -0.4 66 54-127 98-166 (419)
11 COG1660 Predicted P-loop-conta 38.7 17 0.00037 37.0 1.6 49 26-79 6-54 (286)
12 PF12043 DUF3527: Domain of un 35.8 2.1E+02 0.0045 30.2 8.9 73 122-204 6-108 (346)
13 PF04525 Tub_2: Tubby C 2; In 35.2 1.2E+02 0.0027 28.0 6.6 79 122-204 61-144 (187)
14 PF11922 DUF3440: Domain of un 23.9 78 0.0017 30.4 3.1 22 90-111 150-171 (181)
15 PF11038 DGF-1_5: Dispersed ge 23.9 1.1E+02 0.0024 30.1 4.2 49 80-136 20-74 (278)
16 PF03668 ATP_bind_2: P-loop AT 20.9 47 0.001 33.9 1.1 44 26-74 6-49 (284)
17 PF10504 DUF2452: Protein of u 20.5 1.4E+02 0.003 28.2 4.0 18 124-142 83-100 (159)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=2.7e-129 Score=965.28 Aligned_cols=354 Identities=57% Similarity=0.915 Sum_probs=307.1
Q ss_pred CcchhhhhhhcccCCccccccceeccCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCCCCCCcc
Q 014351 1 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARK 80 (426)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~ell~~~~~r~e~se~~wp~r~ 80 (426)
|+++++++++++.. +|+.+....+ ++. +..+++.. .+.....+.|++||||||+|+|+|+|++|+.||+|+
T Consensus 1 ~~~~~~~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~ 71 (355)
T KOG2502|consen 1 MGEDGPVRDPEDKS------SFRAPQGSGT-KGP-EDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRR 71 (355)
T ss_pred CCccCccCCCCccc------chhccccccc-ccC-CCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccc
Confidence 88999999998877 4554443222 111 22233321 111112289999999999999999999999999999
Q ss_pred ceeeecccchhHHHHHHHHhcCCcccccccccccccCCCCCCceEEEEEEEecCCceEEEEecccccccc-cCCeEEEEE
Q 014351 81 HVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLV-ENGKFLLSA 159 (426)
Q Consensus 81 ~vvaca~vc~~wr~~~~eiv~~pe~~g~~tfpisLkqPgPrd~~iQCfIkRdK~~~tY~LYL~l~~~~~~-e~gKFLLaA 159 (426)
+||+||+||+.||++++|||+.||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.++.+. |++||||||
T Consensus 72 ~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaa 151 (355)
T KOG2502|consen 72 NVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAA 151 (355)
T ss_pred ccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999886553 679999999
Q ss_pred EeeccCCceeEEEEecCCCcccCCCceeeEeeccceecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeE
Q 014351 160 KRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIA 239 (426)
Q Consensus 160 RK~rr~t~S~YiISld~~dlSr~S~~yVGKLRSNflGTkFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela 239 (426)
||+||+||+|||||+|++||||++++||||||||||||||||||+|... +|+++ ++|+++|+||
T Consensus 152 rk~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la 215 (355)
T KOG2502|consen 152 RKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELA 215 (355)
T ss_pred eeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCc----------ccccc------cCCcccceee
Confidence 9999999999999999999999999999999999999999999997422 23333 6899999999
Q ss_pred EEEEEeeccccCCCceeEEeecCCCccccCCCCCCCCCcccCCCCcccccccCCcccccccccccCccccccCCCCCccc
Q 014351 240 QVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDE 319 (426)
Q Consensus 240 ~V~Ye~NVLg~rGPRrM~~im~~IP~s~~~~gg~~P~~~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~ 319 (426)
+|+||+||||+||||||+|+|+.||.++ +||++|.|++..... ..|+.. ..
T Consensus 216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~--~l~r~~-------------------------~k 266 (355)
T KOG2502|consen 216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS--LLFRSQ-------------------------NK 266 (355)
T ss_pred EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc--hhhhcc-------------------------cc
Confidence 9999999999999999999999999987 899999998732111 112211 11
Q ss_pred CCCCceEeecCCCcccccccceEeecCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeE
Q 014351 320 GKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFT 399 (426)
Q Consensus 320 ~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~Ft 399 (426)
.++++++|+||.|+|||++||||||||||||+||||||||||+ .++++|||||||||||+||
T Consensus 267 ~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~------------------~~p~~iiLQFGrV~kD~FT 328 (355)
T KOG2502|consen 267 DKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA------------------LDPEYIILQFGRVGKDVFT 328 (355)
T ss_pred CcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc------------------CCCCEEEEEeeeeccceee
Confidence 3689999999999999999999999999999999999999994 3559999999999999999
Q ss_pred EEccCCCCHHHHHHHHHHcCccccccC
Q 014351 400 MDYRYPLSAFQAFAICLSSFDTKLACE 426 (426)
Q Consensus 400 mD~ryPLS~~QAFaIcLssfdtKlACe 426 (426)
|||||||||||||||||||||||||||
T Consensus 329 mDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 329 MDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred ecccCccHHHHHHHHHHHhccccccCC
Confidence 999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=7.1e-85 Score=630.09 Aligned_cols=246 Identities=57% Similarity=0.942 Sum_probs=183.5
Q ss_pred CCCCCceEEEEEEEecCCceEEEEecccccccccCCeEEEEEEeeccCCceeEEEEecCCCcccCCCceeeEeeccceec
Q 014351 118 PGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGT 197 (426)
Q Consensus 118 PgPrd~~iQCfIkRdK~~~tY~LYL~l~~~~~~e~gKFLLaARK~rr~t~S~YiISld~~dlSr~S~~yVGKLRSNflGT 197 (426)
|||+|++|||+|+|||+|++|+||+.+....+.|+|||||||||++++++|||||||+++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 89999999999999999986655555444334588999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEEEeeccccCCCceeEEeecCCCccccCCCCCCCCC
Q 014351 198 KFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQ 277 (426)
Q Consensus 198 kFtIYD~gpp~~~~~~~~~~rsrr~~sk~vsp~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~~~~gg~~P~~ 277 (426)
+|+|||+|++++.+.. .+|..+..++|||+|.||+||||+||||||+|+|++|+....++++.+|.+
T Consensus 81 ~F~iyD~g~~~~~~~~-------------~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSKS-------------ISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCSTC-------------CTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCccccc-------------cCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 9999999987765432 246677789999999999999999999999999999998877777777665
Q ss_pred cccCCCCcccccccCCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCCeeecccccee
Q 014351 278 AELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNF 357 (426)
Q Consensus 278 ~~~~~~~~~e~frs~s~~~d~~~~f~s~r~s~~~~~~~~~~~~~~~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNF 357 (426)
+... ..++. ...+ .....+++++|+||.|+||++++||||||+||||+||||||
T Consensus 148 p~~~---~~~~~---------~~~~--------------~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNF 201 (246)
T PF01167_consen 148 PLNQ---EKDSL---------LSRF--------------QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNF 201 (246)
T ss_dssp -SS----CCCSH---------HHHH--------------HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEE
T ss_pred cccc---ccccc---------cccc--------------cccCCcceEEEecCCCcEeccCCeEEeccCCeEecccccee
Confidence 4200 00000 0001 01246789999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCc
Q 014351 358 QLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFD 420 (426)
Q Consensus 358 QLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfd 420 (426)
|||++ ++++++|||||||++|+|+|||+|||||||||||||||||
T Consensus 202 ql~~~------------------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 202 QLVHP------------------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp EEEBT------------------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred EEEcc------------------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 99983 5678999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.75 E-value=5e-19 Score=183.23 Aligned_cols=78 Identities=42% Similarity=0.758 Sum_probs=71.2
Q ss_pred CceEeecCCCcccccccceEeecCCeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEc
Q 014351 323 RPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDY 402 (426)
Q Consensus 323 ~~lvL~nK~P~w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ 402 (426)
+..++.||+|-|||+.|-|+|||.||||+.|.||||+-. ..+-|||||+|..+.||+||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel---------------------~gkQvmqFgRidg~aytldf 543 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIEL---------------------FGKQVMQFGRIDGPAYTLDF 543 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEee---------------------cchhhheeccccCCcccCCC
Confidence 345999999999999999999999999999999999975 23458999999999999999
Q ss_pred cCCCCHHHHHHHHHHcCcc
Q 014351 403 RYPLSAFQAFAICLSSFDT 421 (426)
Q Consensus 403 ryPLS~~QAFaIcLssfdt 421 (426)
+||+|+.||||+||++.--
T Consensus 544 qypfSa~QaFavalanvtq 562 (565)
T KOG2503|consen 544 QYPFSAGQAFAVALANVTQ 562 (565)
T ss_pred CCchHHHHHHHHHHhhhhh
Confidence 9999999999999998643
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.58 E-value=2.4e-05 Score=57.04 Aligned_cols=36 Identities=28% Similarity=0.695 Sum_probs=30.5
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014351 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 54 w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
|..||+|+|..|+..++.. ++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~--------dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPR--------DLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HH--------HHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHC
Confidence 7899999999999887653 68999999999999884
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.47 E-value=1.9e-05 Score=57.21 Aligned_cols=39 Identities=21% Similarity=0.569 Sum_probs=32.2
Q ss_pred ccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHHH
Q 014351 53 RWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEI 99 (426)
Q Consensus 53 ~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ei 99 (426)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999999864 999999999999998754
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.62 E-value=0.0012 Score=68.50 Aligned_cols=40 Identities=33% Similarity=0.659 Sum_probs=34.4
Q ss_pred CccCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH
Q 014351 52 SRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE 98 (426)
Q Consensus 52 ~~w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e 98 (426)
..|+.||+|||+.|..|+. .+-+++-=++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~-------~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLF-------SNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCC-------cHHHHHHHHhhhhhHHHhccc
Confidence 3699999999999999993 456788889999999997664
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.57 E-value=0.0005 Score=47.48 Aligned_cols=33 Identities=30% Similarity=0.710 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHH
Q 014351 57 LPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCK 97 (426)
Q Consensus 57 ~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~ 97 (426)
||+|++.+|+.+++. +++.+|+.||+.|+.+++
T Consensus 1 lP~~ll~~I~~~l~~--------~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPP--------KDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHhc
Confidence 799999999998863 688899999999999885
No 8
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=96.46 E-value=0.0036 Score=64.48 Aligned_cols=58 Identities=21% Similarity=0.470 Sum_probs=46.5
Q ss_pred CeeeccccceeEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeccCCCeeEEEccCCCCHHHHHHHHHHcCcc
Q 014351 347 GRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDT 421 (426)
Q Consensus 347 GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~iiLQFGKv~kd~FtmD~ryPLS~~QAFaIcLssfdt 421 (426)
.+.+.+.-+=|.|... +..++..+|-|--|.++.|.+||+-.||++|||+||++-.++
T Consensus 287 ~~~~~~~~~~feLf~Q-----------------G~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQ-----------------GSKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeec-----------------ccccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 4556667778999751 123334899999999999999999999999999999987654
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.87 E-value=0.034 Score=57.04 Aligned_cols=96 Identities=19% Similarity=0.380 Sum_probs=60.5
Q ss_pred cCccCC---CChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH--H-----hcCCcc-cccccc--------
Q 014351 51 NSRWAG---LPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE--I-----VRNPEF-SGKITF-------- 111 (426)
Q Consensus 51 ~~~w~~---~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e--i-----v~~pe~-~g~~tf-------- 111 (426)
|++|-+ ||+|+|..|+++|=.+-- +-++.+.||.||+.|+-.+.+ + +|.=+. |++|..
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~---d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLL---DLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhc---chhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 778866 999999999999975432 124668899999987765531 0 011011 111111
Q ss_pred ----cccccCCCCC-CceEEEEEEEe---cCCc-------------eEEEEecccccccccCCeEEE
Q 014351 112 ----PVSLKQPGPR-DGTIQCFIKRD---KSNL-------------TYHLFLCLSPALLVENGKFLL 157 (426)
Q Consensus 112 ----pisLkqPgPr-d~~iQCfIkRd---K~~~-------------tY~LYL~l~~~~~~e~gKFLL 157 (426)
-..|++|--| || |+|-+. |-|. +||=|+-. -.+|++|+
T Consensus 178 ~SWR~Mfl~RpRvrFdG---~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRF-----yP~G~~l~ 236 (366)
T KOG2997|consen 178 TSWREMFLERPRVRFDG---VYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRF-----YPDGHVLM 236 (366)
T ss_pred hHHHHHHhhCcceeecc---eEEEEEeEeecCchhhhhhcCcceeeEEEEEEEe-----cCCCcEEE
Confidence 1236776665 56 888777 2221 99999964 45888874
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=45.71 E-value=6 Score=41.25 Aligned_cols=66 Identities=18% Similarity=0.445 Sum_probs=50.0
Q ss_pred cCCCChHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHHHH--HhcCCcccccccccccccCCCCCCc-eEEE
Q 014351 54 WAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKE--IVRNPEFSGKITFPVSLKQPGPRDG-TIQC 127 (426)
Q Consensus 54 w~~~p~ell~~~~~r~e~se~~wp~r~~vvaca~vc~~wr~~~~e--iv~~pe~~g~~tfpisLkqPgPrd~-~iQC 127 (426)
|.+||.|+|.+|.. |=.-|....-++||++|-.+..+ +-...+.-|+---|.+|-|=.-|+. .++|
T Consensus 98 ~~slpDEill~IFs--------~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rl 166 (419)
T KOG2120|consen 98 WDSLPDEILLGIFS--------CLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRL 166 (419)
T ss_pred cccCCHHHHHHHHH--------hccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEc
Confidence 99999999999985 55667888889999999888743 3445566777666777766666653 4566
No 11
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=38.68 E-value=17 Score=36.95 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=33.2
Q ss_pred cCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCCCCCCc
Q 014351 26 LPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPAR 79 (426)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~ell~~~~~r~e~se~~wp~r 79 (426)
++|.+|-|||. +...++| ..=-|=.||||+||-+.++.++.+++.-+.-
T Consensus 6 VTGlSGAGKsv-Al~~lED----lGyycvDNLPp~Llp~~~~~~~~~~~~~~kv 54 (286)
T COG1660 6 VTGLSGAGKSV-ALRVLED----LGYYCVDNLPPQLLPKLADLMLTLESRITKV 54 (286)
T ss_pred EecCCCCcHHH-HHHHHHh----cCeeeecCCCHHHHHHHHHHHhhcccCCceE
Confidence 45666777876 3333333 3345678999999999999888666554433
No 12
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=35.82 E-value=2.1e+02 Score=30.19 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=40.3
Q ss_pred CceEEEEEEEecCCceEEEEecccccccccCCeEEEEEEeeccC----Ccee--EEEEe-cC------CCcc-----cCC
Q 014351 122 DGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRT----TCTE--YVISM-DA------DNIS-----RSS 183 (426)
Q Consensus 122 d~~iQCfIkRdK~~~tY~LYL~l~~~~~~e~gKFLLaARK~rr~----t~S~--YiISl-d~------~dlS-----r~S 183 (426)
-+++||.+| .+...|.+=+ |+-+=.|||+-.+-. ...+ |.+-. +. .-++ +..
T Consensus 6 qalLq~t~K--NG~P~F~Fsv--------d~~~~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~k~~ 75 (346)
T PF12043_consen 6 QALLQCTWK--NGLPLFEFSV--------DNPEEVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKNKSS 75 (346)
T ss_pred eEEEEEEEe--CCeEEEEEEe--------CCcccEEEEEEeecccccccccceEEEEEeeccccccccccccccccccCC
Confidence 467888887 2222444433 333457888755533 2233 44432 21 1111 223
Q ss_pred CceeeEee-----------ccc-eecEEEEecC
Q 014351 184 STYIGKLR-----------SNF-LGTKFIIYDT 204 (426)
Q Consensus 184 ~~yVGKLR-----------SNf-lGTkFtIYD~ 204 (426)
.+-||+|+ .+. +-|+|++||.
T Consensus 76 ~~iVGQMkVSss~~~~~~~~~~s~~~EFVLf~~ 108 (346)
T PF12043_consen 76 SNIVGQMKVSSSLSSEPSKQGSSMVTEFVLFGV 108 (346)
T ss_pred cceEEEEEeeeeeeecccCCcceeEEEEEEEec
Confidence 47999998 233 7889999995
No 13
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=35.20 E-value=1.2e+02 Score=27.99 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=32.1
Q ss_pred CceEEEEEEEecCCc--eEEEEecccccccccCCeEEEEEEee-ccCCceeEEEEecCC-Cc-ccCCCceeeEeecccee
Q 014351 122 DGTIQCFIKRDKSNL--TYHLFLCLSPALLVENGKFLLSAKRT-RRTTCTEYVISMDAD-NI-SRSSSTYIGKLRSNFLG 196 (426)
Q Consensus 122 d~~iQCfIkRdK~~~--tY~LYL~l~~~~~~e~gKFLLaARK~-rr~t~S~YiISld~~-dl-Sr~S~~yVGKLRSNflG 196 (426)
.|..-..|+|..-.. +|..|.+-+ .+..+.|...||. .-...++..+.+.+. .. .-++...-=+|+.||++
T Consensus 61 ~G~~L~~i~~k~~~l~~~w~i~~~~~----~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~ 136 (187)
T PF04525_consen 61 SGNPLFTIRRKLFSLRPTWEIYRGGG----SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWD 136 (187)
T ss_dssp TS-EEEEEE--------EEEEEETT-------GGGEEEEEE----------EEEEET--T----------SEEEES-TTT
T ss_pred CCCEEEEEEeeecccceEEEEEECCC----CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecC
Confidence 355567888854333 999998632 1223467777765 222233344444322 11 01122233478999999
Q ss_pred cEEEEecC
Q 014351 197 TKFIIYDT 204 (426)
Q Consensus 197 TkFtIYD~ 204 (426)
-+|+|||.
T Consensus 137 ~~~~I~~~ 144 (187)
T PF04525_consen 137 RSFTIYDS 144 (187)
T ss_dssp T--EEEEC
T ss_pred cEEEEEEc
Confidence 99999973
No 14
>PF11922 DUF3440: Domain of unknown function (DUF3440); InterPro: IPR021845 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 53 to 190 amino acids in length. This domain is found associated with PF01507 from PFAM. This domain has a conserved KND sequence motif.
Probab=23.92 E-value=78 Score=30.45 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhcCCcccccccc
Q 014351 90 RSWREMCKEIVRNPEFSGKITF 111 (426)
Q Consensus 90 ~~wr~~~~eiv~~pe~~g~~tf 111 (426)
|+||.||+-|.|+---|-.+.|
T Consensus 150 PswkRic~~ilKND~~cr~lsF 171 (181)
T PF11922_consen 150 PSWKRICKCILKNDYWCRYLSF 171 (181)
T ss_pred chHHHHHHHHHccchhhhhccC
Confidence 8999999999999887877777
No 15
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=23.90 E-value=1.1e+02 Score=30.15 Aligned_cols=49 Identities=33% Similarity=0.531 Sum_probs=37.0
Q ss_pred cceeeecccchhHHHHHHHHhcCCcccccccc-cccccCC----CCCCceEEE-EEEEecCCc
Q 014351 80 KHVVACAAVCRSWREMCKEIVRNPEFSGKITF-PVSLKQP----GPRDGTIQC-FIKRDKSNL 136 (426)
Q Consensus 80 ~~vvaca~vc~~wr~~~~eiv~~pe~~g~~tf-pisLkqP----gPrd~~iQC-fIkRdK~~~ 136 (426)
+-.|+|+..|| |. ++|+..--++| |.++.|| +|++.++.= .-.||+.+.
T Consensus 20 ~~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp 74 (278)
T PF11038_consen 20 KLTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNP 74 (278)
T ss_pred ceEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCC
Confidence 35789999998 76 58999889999 8899999 476665443 566666554
No 16
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.88 E-value=47 Score=33.92 Aligned_cols=44 Identities=36% Similarity=0.552 Sum_probs=31.2
Q ss_pred cCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCC
Q 014351 26 LPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASES 74 (426)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~p~ell~~~~~r~e~se~ 74 (426)
++|-+|-|||. +.+.++| ..=-|=.||||+||.+.+.-++.++.
T Consensus 6 iTGlSGaGKs~-Al~~lED----~Gy~cvDNlP~~Ll~~l~~~~~~~~~ 49 (284)
T PF03668_consen 6 ITGLSGAGKST-ALRALED----LGYYCVDNLPPSLLPQLIELLAQSNS 49 (284)
T ss_pred EeCCCcCCHHH-HHHHHHh----cCeeEEcCCcHHHHHHHHHHHHhcCC
Confidence 34556678887 4444443 33456789999999999999887654
No 17
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=20.50 E-value=1.4e+02 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=13.3
Q ss_pred eEEEEEEEecCCceEEEEe
Q 014351 124 TIQCFIKRDKSNLTYHLFL 142 (426)
Q Consensus 124 ~iQCfIkRdK~~~tY~LYL 142 (426)
-.+|-.++ +-|.+||||.
T Consensus 83 ~A~cnF~p-ipG~iYhLY~ 100 (159)
T PF10504_consen 83 HAKCNFEP-IPGQIYHLYR 100 (159)
T ss_pred hcccCcee-cCCCEEEEEE
Confidence 45676665 6678999996
Done!