BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014353
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
+ I IV VY + +A M K +PVV G NK VG I+ DI +
Sbjct: 6 MKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS 65
Query: 322 IYHDYRSITAKNFLTA----VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKI 377
Y+ R +NFL A VR+ MEE+ ++T N I E I +K +
Sbjct: 66 KYNLIREKHERNFLAAINEPVREIMEEN----------VITLKENADIDEAIETFLTKNV 115
Query: 378 HRIYVVDFNGNLEGVITLRDIISRLVHE 405
+V+ L +IT RD+I L+ +
Sbjct: 116 GGAPIVNDENQLISLITERDVIRALLDK 143
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 26/189 (13%)
Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWF-ESWGKKKLSEIGLPI--MSANHIVKV 273
+PVV+ G + IIT ++ + + E + L+ I P+ + +++ +
Sbjct: 38 LPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITL 97
Query: 274 YEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKN 333
E+ + +A + K +GG P+V N ISL IT ++
Sbjct: 98 KENADIDEAIETFLTKNVGGAPIV----NDENQLISL------------------ITERD 135
Query: 334 FLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVI 393
+ A+ ++E+ D + ++ + +K++ + R+ VV G L G+I
Sbjct: 136 VIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRLVGII 194
Query: 394 TLRDIISRL 402
T D I L
Sbjct: 195 TSTDFIKLL 203
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 284 KLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYME 343
+ M R +PVV +G + VG I+ D LL + ++ ++ + +T VR ME
Sbjct: 172 RTMVRNGFRRLPVVSEG--RLVGIITSTDFIKLLGSDWAFNHMQTGNVRE-ITNVR--ME 226
Query: 344 EHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400
E D ++T +K++ ++ + I + VVD N ++G+IT +D++
Sbjct: 227 EIMKRD------VITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLK 277
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 217 IPVVDLGEGT----IDNIITQSSVIHMLA-ECAGLEWFESWGKKKLSEIGLPIMSANHIV 271
IP++D E T + +++TQ ++ +A C + K+ L I++ +++
Sbjct: 148 IPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFL------KIPIGDLNIITQDNMK 201
Query: 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331
PV+ +++ + ++ +P++++ G +L+ E Y D +
Sbjct: 202 SCQMTTPVIDVIQMLTQGRVSSVPIIDENG-------------YLINVYEAY-DVLGLIK 247
Query: 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEG 391
+ + E S G+ TC++N + ++ + ++HR +VVD G L G
Sbjct: 248 GGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG 307
Query: 392 VITLRDII 399
V+TL DI+
Sbjct: 308 VLTLSDIL 315
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
+PV+D G I+T ++ L + K L E L I + +I V
Sbjct: 152 LPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEE--LQIGTYANIAMVRTT 209
Query: 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLT 336
PV A + + ++ +PVV++ G + V S D+ L A + Y+ N
Sbjct: 210 TPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDV-INLAAEKTYN--------NLDV 259
Query: 337 AVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLR 396
+V K ++ H G++ C + T++ +I+ L ++HR+ VVD + ++G+++L
Sbjct: 260 SVTKALQHRSH----YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS 315
Query: 397 DIISRLV 403
DI+ LV
Sbjct: 316 DILQALV 322
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 217 IPVVDLGEGT----IDNIITQSSVIHMLA-ECAGLEWFESWGKKKLSEIGLPIMSANHIV 271
IP++D E T + +++TQ ++ +A C + K+ L I++ +++
Sbjct: 141 IPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFL------KIPIGDLNIITQDNMK 194
Query: 272 KVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITA 331
PV+ +++ + ++ +P++++ G +L+ E Y D +
Sbjct: 195 SCQMTTPVIDVIQMLTQGRVSSVPIIDENG-------------YLINVYEAY-DVLGLIK 240
Query: 332 KNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEG 391
+ + E S G+ TC++N + ++ + ++HR +VVD G L G
Sbjct: 241 GGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG 300
Query: 392 VITLRDII 399
V+TL DI+
Sbjct: 301 VLTLSDIL 308
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLR 311
+ K L E L I + +I V PV A + + ++ +PVV++ G + V S
Sbjct: 15 FMSKSLEE--LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKF 71
Query: 312 DIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHL 371
D+ L A + Y+ N +V K ++ H G++ C + T++ +I+
Sbjct: 72 DV-INLAAEKTYN--------NLDVSVTKALQHRSH----YFEGVLKCYLHETLETIINR 118
Query: 372 LDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
L ++HR+ VVD N ++G+++L DI+ LV
Sbjct: 119 LVEAEVHRLVVVDENDVVKGIVSLSDILQALV 150
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
L I++ +++ PV+ +++ + ++ +P++++ G +L+ E
Sbjct: 13 LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-------------YLINVYE 59
Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
Y D + + + E S G+ TC++N + ++ + ++HR +
Sbjct: 60 AY-DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFF 118
Query: 382 VVDFNGNLEGVITLRDII 399
VVD G L GV+TL DI+
Sbjct: 119 VVDDVGRLVGVLTLSDIL 136
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLR 311
+ K L E L I + +I V PV A + + ++ +PVV++ G + V S
Sbjct: 15 FMSKSLEE--LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKF 71
Query: 312 DIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHL 371
D+ L A + Y+ N +V K ++ H G++ C + T++ +I+
Sbjct: 72 DV-INLAAEKTYN--------NLDVSVTKALQHRSH----YFEGVLKCYLHETLETIINR 118
Query: 372 LDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
L ++H++ VVD N ++G+++L DI+ LV
Sbjct: 119 LVEAEVHQLVVVDENDVVKGIVSLSDILQALV 150
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 262 LPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPE 321
L I++ ++ PV+ + + + ++ +P++++ G +L+ E
Sbjct: 13 LNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENG-------------YLINVYE 59
Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIY 381
Y D + + + E S G+ TC++N + + + ++HR +
Sbjct: 60 AY-DVLGLIKGGIYNDLSLSVGEALXRRSDDFEGVYTCTKNDKLSTIXDNIRKARVHRFF 118
Query: 382 VVDFNGNLEGVITLRDII 399
VVD G L GV+TL DI+
Sbjct: 119 VVDDVGRLVGVLTLSDIL 136
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 252 WGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLR 311
+ K L E L I + +I V PV A + + ++ +PVV++ G + V S
Sbjct: 15 FMSKSLEE--LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKF 71
Query: 312 DIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHL 371
D+ L A + Y+ N +V K ++ H G++ C + T++ +I+
Sbjct: 72 DV-INLAAEKTYN--------NLDVSVTKALQHRSH----YFEGVLKCYLHETLETIINR 118
Query: 372 LDSKKIHRIYVVDFNGNLEGVITLRDIISRLV 403
L ++H + VVD N ++G+++L DI+ LV
Sbjct: 119 LVEAEVHGLVVVDENDVVKGIVSLSDILQALV 150
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 25/121 (20%)
Query: 279 VLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTA 337
V A LM + +I G+PVV K VG I+ RD++F+ DY SI + +T
Sbjct: 132 VYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI-------QDY-SIKISDVMTK 183
Query: 338 VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRD 397
+ ++T T+ E +L KI ++ +VD NG L+G+IT++D
Sbjct: 184 EQ----------------LITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKD 227
Query: 398 I 398
I
Sbjct: 228 I 228
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 24/134 (17%)
Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
+ V D V +A LM KIGG+PVV++ G + VG ++ RD++F
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDEEG-RLVGLLTNRDVRF--------------- 149
Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
KN ++ M ++ + ++++ +L +I ++ +V + L
Sbjct: 150 EKNLSKKIKDLMTPREK--------LIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLV 201
Query: 391 GVITLRDIISRLVH 404
G+IT++DI+S + H
Sbjct: 202 GLITIKDIMSVIEH 215
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 62 PPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWIL 121
P ++I D SL +A EIL QHRI P+V D ++ +G++ I I
Sbjct: 163 PREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKD--------NKLVGLITIKDIMSVIE 214
Query: 122 H 122
H
Sbjct: 215 H 215
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 23/130 (17%)
Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
++ V +D + K+ K IG + VV+ GNK VG I+ RDI + +
Sbjct: 13 QVISVTKDAKLNDIAKVXTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSLE---- 66
Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGN 388
A+ F TA + EDSP+ +G + R I+ L VVD GN
Sbjct: 67 TKAEEFXTASLITI----REDSPI-TGALALXRQFNIRHL------------PVVDDKGN 109
Query: 389 LEGVITLRDI 398
L+G+I++RDI
Sbjct: 110 LKGIISIRDI 119
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 247 EWFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVG 306
+ ++ GK K E ++ + ED P+ A L R+ I +PVV+ GN G
Sbjct: 54 DIVKAIGKGKSLETKAEEFXTASLITIREDSPITGALALXRQFNIRHLPVVDDKGNLK-G 112
Query: 307 NISLRDI 313
IS+RDI
Sbjct: 113 IISIRDI 119
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 25/124 (20%)
Query: 276 DEPVLQAFKLMRRKKIGGIPVVEKGGN-KAVGNISLRDIQFLLTAPEIYHDYRSITAKNF 334
+ V +A +L +R +I G+P+VE N K VG I+ RD +F+ DY + +++
Sbjct: 106 EHKVSEAEELXQRYRISGVPIVETLANRKLVGIITNRDXRFI-------SDYNAPISEHX 158
Query: 335 LTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVIT 394
+ EH +VT + ++ +L +I ++ +VD +G L G+IT
Sbjct: 159 TS-------EH----------LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLIT 201
Query: 395 LRDI 398
++DI
Sbjct: 202 IKDI 205
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 355 GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405
G+ TC + + + ++HR++VVD N LEG+++L DI++ ++++
Sbjct: 266 GVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD 316
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 355 GMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405
G+ TC + + + ++HR++VVD N LEG+++L DI++ ++++
Sbjct: 265 GVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD 315
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 25/121 (20%)
Query: 279 VLQAFKLMRRKKIGGIPVVEK-GGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTA 337
V A L + +I G+PVV K VG I+ RD +F+ DY SI + T
Sbjct: 132 VYDAEHLXGKYRISGVPVVNNLDERKLVGIITNRDXRFI-------QDY-SIKISDVXTK 183
Query: 338 VRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRD 397
+ ++T T+ E +L KI ++ +VD NG L+G+IT++D
Sbjct: 184 EQ----------------LITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKD 227
Query: 398 I 398
I
Sbjct: 228 I 228
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 270 IVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSI 329
++ + DE V A LM + I G+PVVE K VG I+ +DI
Sbjct: 103 VITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDI---------------- 144
Query: 330 TAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNL 389
A V++ M + ++T + ++E + ++ +I R+ VVD G L
Sbjct: 145 -AAREGKLVKELMTKE----------VITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 390 EGVITLRDIISR 401
G+IT+ D+++R
Sbjct: 194 VGLITMSDLVAR 205
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 357 VTCSRNHTIKELIHLL-----DSKKIHRIYVVDFNGNLEGVITLRDII 399
V T++E++ L D++ I+ IYVVD G L+GV++LRD+I
Sbjct: 166 VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 213
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 357 VTCSRNHTIKELIHLL-----DSKKIHRIYVVDFNGNLEGVITLRDII 399
V T++E++ L D++ I+ IYVVD G L+GV++LRD+I
Sbjct: 146 VAVREGXTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 193
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 357 VTCSRNHTIKELIHLL-----DSKKIHRIYVVDFNGNLEGVITLRDII 399
V T++E++ L D++ I+ IYVVD G L+GV++LRD+I
Sbjct: 146 VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLI 193
>pdb|3LV9|A Chain A, Crystal Structure Of Cbs Domain Of A Putative Transporter
From Clostridium Difficile 630
Length = 148
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 27/155 (17%)
Query: 251 SWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISL 310
+ +KK+ EI +P V +YE + + +++ + + PV K + +G + +
Sbjct: 19 EFEEKKIREIXVP---RTDXVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHI 75
Query: 311 RDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIH 370
RD+ Y+ + + E+ E +L ++ S N TI + +
Sbjct: 76 RDL---------YN---------------QKINENKIELEEILRDIIYISENLTIDKALE 111
Query: 371 LLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405
+ +K+ VVD G GV+T+ DI+ +V E
Sbjct: 112 RIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE 146
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 282 AFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKY 341
A +L ++ K+ PVV K G K VG IS++ I L P+ + V++
Sbjct: 23 ALELFKKYKVRSFPVVNKEG-KLVGIISVKRI---LVNPD---------EEQLAMLVKR- 68
Query: 342 MEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISR 401
D P+ N T+K+ L+ R+ VVD G G++T+ DII R
Sbjct: 69 -------DVPV------VKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR 115
Query: 402 LVHEPPGYFG 411
+ Y G
Sbjct: 116 YFAKSEKYKG 125
>pdb|2O16|A Chain A, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
pdb|2O16|B Chain B, Crystal Structure Of A Putative Acetoin Utilization
Protein (Acub) From Vibrio Cholerae
Length = 160
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 358 TCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIIS 400
T R HT+ + HL+++ I + +VD N L G+++ RD+++
Sbjct: 17 TLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLA 59
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
V V +++ ++ R G PVVE+G + VG ++ RD++ A + +T
Sbjct: 99 VTVTPSTKIIELLQMAREYGFSGFPVVEQG--ELVGIVTGRDLRVKPNAGDTVAAI--MT 154
Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
K+ L R E +PL +E+ L +I ++ VVD N L
Sbjct: 155 PKDKLVTAR--------EGTPL-------------EEMKAKLYENRIEKMLVVDENFYLR 193
Query: 391 GVITLRDI 398
G++T RDI
Sbjct: 194 GLVTFRDI 201
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 271 VKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSIT 330
V V +++ ++ R G PVVE+G + VG ++ RD++ A + +T
Sbjct: 119 VTVTPSTKIIELLQMAREYGFSGFPVVEQG--ELVGIVTGRDLRVKPNAGDTVAAI--MT 174
Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLE 390
K+ L R E +PL +E+ L +I ++ VVD N L
Sbjct: 175 PKDKLVTAR--------EGTPL-------------EEMKAKLYENRIEKMLVVDENFYLR 213
Query: 391 GVITLRDI 398
G++T RDI
Sbjct: 214 GLVTFRDI 221
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 257 LSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL 316
L I + + +++ E V++AF+ + KI +PV++ NK +G ++ DI +
Sbjct: 5 LKNIKVKDVXTKNVITAKRHEGVVEAFEKXLKYKISSLPVIDD-ENKVIGIVTTTDIGYN 63
Query: 317 LTAPE--IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDS 374
L + + + K+ +T HED+ +L + + +E+I+ L
Sbjct: 64 LIRDKYTLETTIGDVXTKDVITI---------HEDASILEAIKKXDISGKKEEIINQLP- 113
Query: 375 KKIHRIYVVDFNGNLEGVITLRDII 399
VVD N L G+I+ DII
Sbjct: 114 -------VVDKNNKLVGIISDGDII 131
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 59 FPPPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVD 96
P PP + +KSD ++ EA+ ++ +HR+ PVVD D
Sbjct: 391 LPAPP---VILKSDATVGEAIALMKKHRVDQLPVVDQD 425
>pdb|2OUX|A Chain A, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
pdb|2OUX|B Chain B, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
Length = 286
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 346 HHEDSP----LLSGMVTCSRNHTIKELIHLLDSK-----KIHRIYVVDFNGNLEGVITLR 396
H+ED + V+ N T++ ++L ++ I+ +YVVD +L GVI+LR
Sbjct: 133 HYEDETAGAIXTTEFVSIVANQTVRSAXYVLKNQADXAETIYYVYVVDQENHLVGVISLR 192
Query: 397 DII 399
D+I
Sbjct: 193 DLI 195
>pdb|2RIF|A Chain A, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|B Chain B, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|C Chain C, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIF|D Chain D, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Complexed With Amp
pdb|2RIH|A Chain A, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
pdb|2RIH|B Chain B, Cbs Domain Protein Pae2072 From Pyrobaculum Aerophilum
Length = 141
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 261 GLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQF 315
+PI AN + V + +PV A + MRR I + VV K G + VG +S+RD+ F
Sbjct: 73 AMPI--ANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCF 124
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
+P+VD G + IIT + LA+ KK + EI M+ N ++ +ED
Sbjct: 35 LPIVD-EHGKLVGIITSWDIAKALAQ----------NKKTIEEI----MTRN-VITAHED 78
Query: 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317
EPV M + I G+PVV+ + VG ++ DI L
Sbjct: 79 EPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLF 118
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 217 IPVVDLGEGTIDNIITQSSVIHMLAECAGLEWFESWGKKKLSEIGLPIMSANHIVKVYED 276
+P+VD G + IIT + LA+ KK + EI M+ N ++ +ED
Sbjct: 37 LPIVD-EHGKLVGIITSWDIAKALAQ----------NKKTIEEI----MTRN-VITAHED 80
Query: 277 EPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLL 317
EPV M + I G+PVV+ + VG ++ DI L
Sbjct: 81 EPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLF 120
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 22/137 (16%)
Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRS 328
H+VK V +A +L+ +I G PV+++ K VG +S D+ L D
Sbjct: 18 HVVK--PTTTVDEALELLVENRITGFPVIDEDW-KLVGLVSDYDLLAL--------DSGD 66
Query: 329 ITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKI------HRIYV 382
T K F AV+K + + + + L G + ++E +L D+ KI R+ V
Sbjct: 67 STWKTF-NAVQKLLSKTNGK----LVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPV 121
Query: 383 VDFNGNLEGVITLRDII 399
VD +G L G+IT +++
Sbjct: 122 VDSDGKLVGIITRGNVV 138
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 69 IKSDTSLAEAVEILAQHRILSAPVVDVD 96
+K T++ EA+E+L ++RI PV+D D
Sbjct: 20 VKPTTTVDEALELLVENRITGFPVIDED 47
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 355 GMVTCSRNHTIKELIHLL-DSKKIHRIYV---VDFNGNLEGVITLRDIISRLVHEPPGYF 410
G +C+ N I+E +L+ D H++ VD NG L + + + SR PP +
Sbjct: 74 GNPSCASNINIREWSYLIEDPNAPHKLCFPGEVDNNGELRHLFSGVNSFSRTELIPPSKW 133
Query: 411 GDFFDGVLPLPEN 423
GD +G +N
Sbjct: 134 GDILEGTTASCQN 146
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 355 GMVTCSRNHTIKELIHLL-DSKKIHRIYV---VDFNGNLEGVITLRDIISRLVHEPPGYF 410
G +C+ N I+E +L+ D H++ VD NG L + + + SR PP +
Sbjct: 74 GNPSCASNINIREWSYLIEDPNAPHKLCFPGEVDNNGELRHLFSGVNSFSRTELIPPSKW 133
Query: 411 GDFFDGVLPLPEN 423
GD +G +N
Sbjct: 134 GDILEGTTASCQN 146
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 288 RKKIGGIPVVEKG--GNKAVGNISLRDIQFL 316
R GIP+ E G G+K VG ++ RDI FL
Sbjct: 136 RHGFSGIPITETGTMGSKLVGIVTSRDIDFL 166
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 351 PLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHE 405
+ +V C N T +L+ ++ + + V + NG L G+I++ D++ + E
Sbjct: 98 AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPV-EENGRLAGIISIGDVVKARIGE 151
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 248 WFESWGKKKLSEIGLPIMSANHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGN 307
+F+S + ++ IGL +M N I+ + + V+ AF K+ E G K VG
Sbjct: 19 YFQSMAQADIALIGLAVMGQNLILNMNDHGFVVCAFN-RTVSKVDDFLANEAKGTKVVGA 77
Query: 308 ISLRDIQFLLTAPE 321
SL+++ L P
Sbjct: 78 QSLKEMVSKLKKPR 91
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 22/144 (15%)
Query: 269 HIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFL-------LTAPE 321
H+VK V +A +L+ +I G PV+++ K VG +S D+ L T
Sbjct: 18 HVVK--PTTTVDEALELLVENRITGFPVIDEDW-KLVGLVSDYDLLALDSISGSGRTENS 74
Query: 322 IYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKI---- 377
++ + S T K F AV+K + + + + L G + ++E +L D+ KI
Sbjct: 75 MFPEVDS-TWKTF-NAVQKLLSKTNGK----LVGDLMTPAPLVVEEKTNLEDAAKILLET 128
Query: 378 --HRIYVVDFNGNLEGVITLRDII 399
R+ VVD +G L G+IT +++
Sbjct: 129 KYRRLPVVDSDGKLVGIITRGNVV 152
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 69 IKSDTSLAEAVEILAQHRILSAPVVDVD 96
+K T++ EA+E+L ++RI PV+D D
Sbjct: 20 VKPTTTVDEALELLVENRITGFPVIDED 47
>pdb|3KXR|A Chain A, Structure Of The Cystathionine Beta-Synthase Pair Domain
Of The Putative Mg2+ Transporter So5017 From Shewanella
Oneidensis Mr-1
Length = 205
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 331 AKNFLTAVRKYMEEHHHEDSPLLSGMVTCSR----NHTIKELIHLLDSKKIHRIYVVDFN 386
A +L VR+Y H PL+S + SR N T+ + ++ + + V+D
Sbjct: 97 ADKYLGTVRRYDIFKHEPHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDA 156
Query: 387 GNLEGVITLR 396
G L G +TLR
Sbjct: 157 GELIGRVTLR 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,438,099
Number of Sequences: 62578
Number of extensions: 441307
Number of successful extensions: 1225
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 101
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)